Psyllid ID: psy16366
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | 2.2.26 [Sep-21-2011] | |||||||
| Q767L0 | 807 | ATP-binding cassette sub- | yes | N/A | 0.955 | 0.672 | 0.508 | 1e-144 | |
| Q7YR37 | 807 | ATP-binding cassette sub- | yes | N/A | 0.955 | 0.672 | 0.505 | 1e-143 | |
| Q8NE71 | 845 | ATP-binding cassette sub- | no | N/A | 0.961 | 0.646 | 0.514 | 1e-143 | |
| Q6MG08 | 839 | ATP-binding cassette sub- | yes | N/A | 0.961 | 0.650 | 0.514 | 1e-143 | |
| Q6P542 | 837 | ATP-binding cassette sub- | yes | N/A | 0.961 | 0.652 | 0.514 | 1e-139 | |
| Q9M1H3 | 723 | ABC transporter F family | yes | N/A | 0.945 | 0.742 | 0.401 | 1e-118 | |
| Q9FJH6 | 595 | ABC transporter F family | no | N/A | 0.846 | 0.808 | 0.383 | 1e-96 | |
| Q9UG63 | 623 | ATP-binding cassette sub- | no | N/A | 0.894 | 0.815 | 0.378 | 4e-93 | |
| Q99LE6 | 628 | ATP-binding cassette sub- | no | N/A | 0.894 | 0.808 | 0.375 | 5e-92 | |
| Q8K268 | 709 | ATP-binding cassette sub- | no | N/A | 0.934 | 0.748 | 0.371 | 5e-90 |
| >sp|Q767L0|ABCF1_PIG ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 301/592 (50%), Positives = 408/592 (68%), Gaps = 49/592 (8%)
Query: 8 KEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL 67
KEK + +Q +Y++++++L + +F+VSQ+ +S R + +N+ DIK+E FS+
Sbjct: 218 KEKAKKAEQMEYERQVASLKAANAAEN--DFSVSQAEMSS--RQAMLENASDIKLEKFSI 273
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127
SA G ELF NA+L I +GRRYGLVGPNG GKTTLL+HIA RAL+IP +ID+L CEQEV A
Sbjct: 274 SAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVA 333
Query: 128 SDDSAVNIVLSADKNRVKLLKECSKLERD-ESGDNQL--RLTEVYDELKSIEADAAEPRA 184
+ AV VL AD R+KLL+E +L+ E GD+ RL +VY+EL++ A AAE +A
Sbjct: 334 DETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAADRLEKVYEELRATGAAAAEAKA 393
Query: 185 RRILAGLGF------------------------------TTIYIPSSRVH---------- 204
RRILAGLGF T + + H
Sbjct: 394 RRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLN 453
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264
++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K+Y
Sbjct: 454 NYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQY 513
Query: 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVK 322
E QEK+++E+K+ G S ++AE+Q ++Q R++ Q ++ E ELL++P+EY V+
Sbjct: 514 EKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVR 573
Query: 323 FRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
F FP+PP L PPVLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL
Sbjct: 574 FTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLL 633
Query: 383 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442
G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 634 TGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGL 693
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G
Sbjct: 694 ESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGA 753
Query: 503 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
VI+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 754 VIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 805
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Sus scrofa (taxid: 9823) |
| >sp|Q7YR37|ABCF1_PANTR ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 299/592 (50%), Positives = 406/592 (68%), Gaps = 49/592 (8%)
Query: 8 KEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL 67
KEK + +Q +Y++++++L + +F+VSQ+ +S R + +N+ DIK+E FS+
Sbjct: 218 KEKAKKAEQMEYERQVASLKAANAAEN--DFSVSQAEMSS--RQAMLENASDIKLEKFSI 273
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127
SA G ELF NA+L I + RRYGLVGPNG GKTTLL+HIA RAL+IP +ID+L CEQEV A
Sbjct: 274 SAHGKELFVNADLYIVASRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQEVVA 333
Query: 128 SDDSAVNIVLSADKNRVKLLKECSKLERD-ESGDNQL--RLTEVYDELKSIEADAAEPRA 184
+ AV VL AD R+KLL+E +L+ E GD+ RL +VY+EL++ A AAE +A
Sbjct: 334 DETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAEAKA 393
Query: 185 RRILAGLGF------------------------------TTIYIPSSRVH---------- 204
RRILAGLGF T + + H
Sbjct: 394 RRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVIWLN 453
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264
++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K+Y
Sbjct: 454 NYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLKQY 513
Query: 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREYIVK 322
E QEK+++E+K+ G S ++AE+Q ++Q R++ Q ++ E ELL++P+EY V+
Sbjct: 514 EKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYTVR 573
Query: 323 FRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
F FP+PP L PPVLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L LL
Sbjct: 574 FTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLL 633
Query: 383 KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442
G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG FGL
Sbjct: 634 TGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRFGL 693
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+G
Sbjct: 694 ESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYKGA 753
Query: 503 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 754 VIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 805
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Pan troglodytes (taxid: 9598) |
| >sp|Q8NE71|ABCF1_HUMAN ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 306/595 (51%), Positives = 412/595 (69%), Gaps = 49/595 (8%)
Query: 5 LSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVEN 64
LS KEKK+LKKQ +Y++++++L + +F+VSQ+ +S R + +N+ DIK+E
Sbjct: 253 LSKKEKKKLKKQMEYERQVASLKAANAAEN--DFSVSQAEMSS--RQAMLENASDIKLEK 308
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
FS+SA G ELF NA+L I +GRRYGLVGPNG GKTTLL+HIA RAL+IP +ID+L CEQE
Sbjct: 309 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 368
Query: 125 VEASDDSAVNIVLSADKNRVKLLKECSKLERD-ESGDNQL--RLTEVYDELKSIEADAAE 181
V A + AV VL AD R+KLL+E +L+ E GD+ RL +VY+EL++ A AAE
Sbjct: 369 VVADETPAVQAVLRADTKRLKLLEEERRLQGQLEQGDDTAAERLEKVYEELRATGAAAAE 428
Query: 182 PRARRILAGLGF------------------------------TTIYIPSSRVH------- 204
+ARRILAGLGF T + + H
Sbjct: 429 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 488
Query: 205 ---EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL
Sbjct: 489 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELL 548
Query: 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREY 319
K+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q ++ E ELL++P+EY
Sbjct: 549 KQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEY 608
Query: 320 IVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V+F FP+PP L PPVLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 609 TVRFTFPDPPPLSPPVLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLL 668
Query: 380 NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
LL G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG
Sbjct: 669 LLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGR 728
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
FGL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y
Sbjct: 729 FGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEY 788
Query: 500 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
+G VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 789 KGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 843
|
Isoform 2 is required for efficient Cap- and IRES-mediated mRNA translation initiation. Isoform 2 is not involved in the ribosome biogenesis. Homo sapiens (taxid: 9606) |
| >sp|Q6MG08|ABCF1_RAT ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 507 bits (1306), Expect = e-143, Method: Compositional matrix adjust.
Identities = 306/595 (51%), Positives = 411/595 (69%), Gaps = 49/595 (8%)
Query: 5 LSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVEN 64
LS KEKK+LKKQ Y++++ +L + +F+VSQ+ +S R + +N+ DIK+E
Sbjct: 247 LSKKEKKKLKKQMDYERQVESLKAANAAEN--DFSVSQAEVSS--RQAMLENASDIKLEK 302
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
FS+SA G ELF NA+L I +GRRYGLVGPNG GKTTLL+HIA RAL+IP +ID+L CEQE
Sbjct: 303 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 362
Query: 125 VEASDDSAVNIVLSADKNRVKLLKECSKLERD-ESGDNQL--RLTEVYDELKSIEADAAE 181
V A + AV VL AD R++LL+E +L+ E GD+ +L +VY+EL++ A AAE
Sbjct: 363 VVADETPAVQAVLRADTKRLRLLEEEKRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAE 422
Query: 182 PRARRILAGLGF------------------------------TTIYIPSSRVH------- 204
+ARRILAGLGF T + + H
Sbjct: 423 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 482
Query: 205 ---EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL
Sbjct: 483 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELL 542
Query: 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREY 319
K+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q ++ +P ELL++PREY
Sbjct: 543 KQYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREY 602
Query: 320 IVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V+F FP+PP L PPVLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 603 TVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLL 662
Query: 380 NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
LL G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG
Sbjct: 663 LLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGR 722
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
FGL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y
Sbjct: 723 FGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEY 782
Query: 500 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
+G VI+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 783 KGAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Rattus norvegicus (taxid: 10116) |
| >sp|Q6P542|ABCF1_MOUSE ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 306/595 (51%), Positives = 411/595 (69%), Gaps = 49/595 (8%)
Query: 5 LSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVEN 64
LS KEKK+LKKQ Y++++ +L + +F+VSQ+ +S R + +N+ DIK+E
Sbjct: 245 LSKKEKKKLKKQMDYERQVESLKAANAAEN--DFSVSQAEVSS--RQAMLENASDIKLEK 300
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
FS+SA G ELF NA+L I +GRRYGLVGPNG GKTTLL+HIA RAL+IP +ID+L CEQE
Sbjct: 301 FSISAHGKELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNIDVLLCEQE 360
Query: 125 VEASDDSAVNIVLSADKNRVKLLKECSKLERD-ESGDNQL--RLTEVYDELKSIEADAAE 181
V A + AV VL AD R++LL+E +L+ E GD+ +L +VY+EL++ A AAE
Sbjct: 361 VVADETPAVQAVLRADTKRLRLLEEERRLQGQLEQGDDTAAEKLEKVYEELRATGAAAAE 420
Query: 182 PRARRILAGLGF------------------------------TTIYIPSSRVH------- 204
+ARRILAGLGF T + + H
Sbjct: 421 AKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEPTNHLDLNAVI 480
Query: 205 ---EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL
Sbjct: 481 WLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELL 540
Query: 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQKDDDDEPKELLEKPREY 319
K+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q ++ EP ELL++P+EY
Sbjct: 541 KQYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQEPPELLKRPKEY 600
Query: 320 IVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V+F FP+PP L PPVLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 601 TVRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLL 660
Query: 380 NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
LL G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG
Sbjct: 661 LLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSFNLPYQDARKCLGR 720
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
FGL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI +Y
Sbjct: 721 FGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINDY 780
Query: 500 QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
+G VI+VSHD RLI ET+C+LW +E++ + + +GDFDDY+ ++L +LGE MV P
Sbjct: 781 KGAVIVVSHDARLITETNCQLWVVEEQGVSQIDGDFDDYKREVLEALGEVMVNRP 835
|
Required for efficient Cap- and IRES-mediated mRNA translation initiation. Not involved in the ribosome biogenesis. Mus musculus (taxid: 10090) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/612 (40%), Positives = 362/612 (59%), Gaps = 75/612 (12%)
Query: 5 LSHKEKKQLKKQSKYQQELSALSGGQG---TDELENFTVSQSSKAS--SKRSTVDDNSVD 59
+S +K+Q K+++K + L A + D+ + FTV SK S D N D
Sbjct: 103 ISVTDKEQKKREAKERLALQAAESAKREAMKDDHDAFTVVIGSKTSVLEGDDMADANVKD 162
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I +E+FS+SA+G EL NA+++I+ G+RYGL+GPNG GK+TLL+ +A R + +P +ID+L
Sbjct: 163 ITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVL 222
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN------------QLRLTE 167
EQEV + SA+N V+SA++ VKL +E L++ SG + +L E
Sbjct: 223 LVEQEVVGDEKSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKLAE 282
Query: 168 VYDELKSIEADAAEPRARRILAGLGFT-----------------------TIYI------ 198
+YD L+ + +DAAE +A +ILAGLGFT +++
Sbjct: 283 LYDRLQILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTLLL 342
Query: 199 ---PSSRV--------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247
P++ + E + WKKTL+VVSHD+ FLN +CT+IIHL + L +Y+GNF
Sbjct: 343 LDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQNLHFYRGNFD 402
Query: 248 LFKKMYVQKRKELTKEYELQEKQIREMKSQGM--SKEKAERQHSHKALKEQARKRVQKDD 305
F+ Y Q+RKE+ K++++ +KQ++ K G +EK + + A KE ++ + +
Sbjct: 403 GFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTAAKEASKSKSKGKT 462
Query: 306 DDEPKELLEKPR---EYIVKFRFPNPPYLPPPVLGLHDVTFGYPG-GKVLLEKVNFGLDM 361
DE E PR +Y V F FP P L PP+L L +V+F YP L V+ G+DM
Sbjct: 463 VDEEGPAPEAPRKWRDYSVVFHFPEPTELTPPLLQLIEVSFSYPNRPDFRLSNVDVGIDM 522
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+RVA+VGPNG GKST LNLL G+L P +GE+R+S +LRIG++ QH + L +TP +Y
Sbjct: 523 GTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQY 582
Query: 422 LMKL------FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475
L++L F+ E R +LG FGLPS+ H PI LSGGQKARV ++++ P IL
Sbjct: 583 LLRLHPDQEGFS-KQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVVFTSISMSKPHIL 641
Query: 476 ILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI-----RETDCELWALEKKNIRK 530
+LDEPTN+LD++SIDALA+A+ + GGV+LVSHD RLI E ++W +E +
Sbjct: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVVEDGTVNF 701
Query: 531 FNGDFDDYREKL 542
F G F++Y+E L
Sbjct: 702 FPGTFEEYKEDL 713
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/537 (38%), Positives = 307/537 (57%), Gaps = 56/537 (10%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
S DI++E+ S++ G +L ++ L++ GRRYGL+G NG GK+TLL I R + IP +
Sbjct: 66 SRDIRIESLSVTFHGYDLIVDSMLELNYGRRYGLLGLNGCGKSTLLTAIGRREIPIPDQM 125
Query: 117 DLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIE 176
D+ + E+EA+D S++ V+S D+ R++L KE L + + G + RL +Y+ L +++
Sbjct: 126 DIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQQDDGGGE-RLQSIYERLDAMD 184
Query: 177 ADAAEPRARRILAGLGFT-----------------------------TIYI---PSSRV- 203
A+ AE RA IL GLGF TI + P++ +
Sbjct: 185 AETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMRIALARALFIMPTILLLDEPTNHLD 244
Query: 204 -------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQK 256
E ++ + + L+VVSH Q FLN +CT+IIH+ K+L YY GNF Y Q
Sbjct: 245 LEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQLKYYTGNF----DQYCQT 300
Query: 257 RKEL----TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312
R EL K+Y +++QI MK + A H L QA+ + + E L
Sbjct: 301 RSELEENQMKQYRWEQEQISHMK-----EYIARFGHGSAKLARQAQSKEKTLAKMERGGL 355
Query: 313 LEK-PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPN 371
EK R+ ++ FRF + LPPPVL +V+FGY ++ + ++FG+D++SRVALVGPN
Sbjct: 356 TEKVARDSVLVFRFADVGKLPPPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVALVGPN 415
Query: 372 GIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY 430
G GKST L L+ GEL P +G +R+ L+I ++ QH E L + Y+M+ F
Sbjct: 416 GAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFPGTEE 475
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
EK R +G FGL A +P+++LS GQ++RV A L P++L+LDEPTN+LDIE+ID
Sbjct: 476 EKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDIETID 535
Query: 491 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLG 547
+LAEA+ + GG++LVSHD RLI + E+W EK+ I K+NGD D++ L G
Sbjct: 536 SLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCEKQCITKWNGDIMDFKRHLKAKAG 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9UG63|ABCF2_HUMAN ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 212/560 (37%), Positives = 313/560 (55%), Gaps = 52/560 (9%)
Query: 32 TDELENFTVSQSS-KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGL 90
T ELE+F + +++ +A + NS D+ + N SL+ G EL + L++ SGRRYGL
Sbjct: 57 TKELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGL 116
Query: 91 VGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKEC 150
+G NG GK+ LL I R + IP ID+ + +E+ SD + ++ V+ D R L KE
Sbjct: 117 IGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSDKTPLHCVMEVDTERAMLEKEA 176
Query: 151 SKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT---------------- 194
+L +++ +L E+Y+ L+ ++AD AE RA RIL GLGFT
Sbjct: 177 ERLAHEDAECE--KLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWR 234
Query: 195 -------TIYI---------PSSRV--------HEIMRTWKKTLLVVSHDQSFLNNICTD 230
++I P++ + E ++T+K+ L++VSH Q FLN +CT+
Sbjct: 235 MRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTN 294
Query: 231 IIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH 290
IIH+ KKL YY GN+ + K ++ + K + ++ QI MK+ A H
Sbjct: 295 IIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNY-----IARFGHGS 349
Query: 291 KALKEQARKRVQKDDDDEPKELLEKP-REYIVKFRFPNPPYLPPPVLGLHDVTFGYP-GG 348
L QA+ + + L E+ + + F FP +PPPV+ + +V+F Y G
Sbjct: 350 AKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDG 409
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408
+ + FG+D+++RVALVGPNG GKST L LL GEL P G +RK ++IG++ QH
Sbjct: 410 PCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHL 469
Query: 409 GEHLFPDDTPCEYLMKLFNLPYEKS--RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466
E L D +P EY+MK + EK R+ +G +GL PIR+LS GQK RV LA
Sbjct: 470 QEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAW 529
Query: 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKK 526
L NP +L LDEPTN+LDIE+IDALA+AI ++GG++LVSHD RLI++ E+W EK+
Sbjct: 530 LAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQ 589
Query: 527 NIRKFNGDFDDYREKLLTSL 546
I K+ GD Y+E L + L
Sbjct: 590 TITKWPGDILAYKEHLKSKL 609
|
Homo sapiens (taxid: 9606) |
| >sp|Q99LE6|ABCF2_MOUSE ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (868), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 210/560 (37%), Positives = 312/560 (55%), Gaps = 52/560 (9%)
Query: 32 TDELENFTVSQSS-KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGL 90
T ELE+F + +++ +A + NS D+ + N SL+ G EL + L++ SGRRYGL
Sbjct: 62 TKELEDFEMKKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGL 121
Query: 91 VGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKEC 150
+G NG GK+ LL I R + IP ID+ + +E+ S+ + + V+ D R L +E
Sbjct: 122 IGLNGIGKSMLLSAIGKREVPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAMLEREA 181
Query: 151 SKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFT---------------- 194
+L +++ +L E+Y+ L+ ++AD AE RA RIL GLGFT
Sbjct: 182 ERLAHEDAECE--KLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWR 239
Query: 195 -------TIYI---------PSSRV--------HEIMRTWKKTLLVVSHDQSFLNNICTD 230
++I P++ + E ++T+K+ L++VSH Q FLN +CT+
Sbjct: 240 MRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTN 299
Query: 231 IIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSH 290
IIH+ KKL YY GN+ + K ++ + K + ++ QI MK+ A H
Sbjct: 300 IIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNY-----IARFGHGS 354
Query: 291 KALKEQARKRVQKDDDDEPKELLEKP-REYIVKFRFPNPPYLPPPVLGLHDVTFGYP-GG 348
L QA+ + + L E+ + + F FP +PPPV+ + +V+F Y G
Sbjct: 355 AKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDG 414
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408
+ + FG+D+++RVALVGPNG GKST L LL GEL P G +RK ++IG++ QH
Sbjct: 415 PCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHL 474
Query: 409 GEHLFPDDTPCEYLMKLFNLPYEKS--RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466
E L D +P EY+MK + EK R+ +G +GL PIR+LS GQK RV LA
Sbjct: 475 QEQLDLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAW 534
Query: 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKK 526
L NP +L LDEPTN+LDIE+IDALA+AI ++GG++LVSHD RLI++ E+W EK+
Sbjct: 535 LAWQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQ 594
Query: 527 NIRKFNGDFDDYREKLLTSL 546
I K+ GD Y+E L + L
Sbjct: 595 TITKWPGDILAYKEHLKSKL 614
|
Mus musculus (taxid: 10090) |
| >sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 219/590 (37%), Positives = 324/590 (54%), Gaps = 59/590 (10%)
Query: 2 SKKLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIK 61
+KKL E + KQ K ++ + + E + + + S K S S+ + S D++
Sbjct: 120 AKKLEKAEARLKAKQEKRSEKETLKTSNPLVLEEASASQAGSRKESRLESSGKNKSYDVR 179
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
+ENF +S L A++ +A GRRYGLVG NG GKTTLL+ +ATR+L +P+ I LL+
Sbjct: 180 IENFDVSFGDRVLLAGADVNLAWGRRYGLVGRNGLGKTTLLKMLATRSLRVPAHISLLHV 239
Query: 122 EQEVEASDDSAVNIVLSADKNRVKLLKECSKLE------RDESGDNQLRLTEVYDELKSI 175
EQEV D A+ VL +D R LL++ +L R E G +L E+Y +L+ I
Sbjct: 240 EQEVAGDDTPALQSVLESDTVREDLLRQERELSLRIAAGRAE-GSEAAQLAEIYGKLEEI 298
Query: 176 EADAAEPRARRILAGLGFTT---------------IYIPSSR------------------ 202
EAD A RA ILAGLGFT + + +R
Sbjct: 299 EADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARALFARPDLLLLDEPTNML 358
Query: 203 -------VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ 255
+ ++TW T+LVVSHD++FLN I TDIIHL ++L Y+G+F F K +
Sbjct: 359 DVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQE 418
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQAR-KRVQKDDDDEPKELLE 314
+ +EYE Q+ Q R+ + + R ++++A + Q++ K ++K + +P ++
Sbjct: 419 RLLNQQREYEAQQ-QYRQHIQVFIDRF---RYNANRASQVQSKLKMLEKLPELKP---VD 471
Query: 315 KPREYIVKFRFPNP-PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGI 373
K E ++KF P+ PP+L L +V F Y + +++ D+ESR+ +VG NG
Sbjct: 472 KESEVVLKF--PDGFEKFSPPILQLDEVDFYYDPKHSIFSRLSVSADLESRICVVGENGA 529
Query: 374 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEK 432
GKST L LL G+L+P +G L+IG F QH E L + + E L + F LP E+
Sbjct: 530 GKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEE 589
Query: 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
R QLG +G+ P+ LSGGQK+RVA A++T+ P+ ILDEPTN+LD+E+I+AL
Sbjct: 590 YRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEAL 649
Query: 493 AEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542
+A+ N++GGVILVSHDER IR ELW E ++ + G FD YR L
Sbjct: 650 GQALNNFRGGVILVSHDERFIRLVCKELWVCENGSVTRVEGGFDQYRALL 699
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| 427788935 | 693 | Putative transporter abc superfamily [Rh | 0.980 | 0.803 | 0.583 | 0.0 | |
| 442762029 | 706 | Putative atp, partial [Ixodes ricinus] | 0.980 | 0.788 | 0.575 | 0.0 | |
| 91076670 | 807 | PREDICTED: similar to AGAP012249-PA [Tri | 0.947 | 0.666 | 0.590 | 0.0 | |
| 156544038 | 627 | PREDICTED: ATP-binding cassette sub-fami | 0.941 | 0.853 | 0.599 | 0.0 | |
| 383848444 | 632 | PREDICTED: ATP-binding cassette sub-fami | 0.941 | 0.846 | 0.594 | 0.0 | |
| 391330522 | 770 | PREDICTED: ATP-binding cassette sub-fami | 0.975 | 0.719 | 0.563 | 0.0 | |
| 193676397 | 1024 | PREDICTED: ATP-binding cassette sub-fami | 0.977 | 0.541 | 0.553 | 0.0 | |
| 340711562 | 632 | PREDICTED: LOW QUALITY PROTEIN: ATP-bind | 0.952 | 0.856 | 0.582 | 0.0 | |
| 332022454 | 657 | ATP-binding cassette sub-family F member | 0.941 | 0.814 | 0.587 | 0.0 | |
| 322795259 | 647 | hypothetical protein SINV_01158 [Solenop | 0.941 | 0.826 | 0.585 | 0.0 |
| >gi|427788935|gb|JAA59919.1| Putative transporter abc superfamily [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/605 (58%), Positives = 457/605 (75%), Gaps = 48/605 (7%)
Query: 2 SKKLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIK 61
+KK+SHKEKK +KKQS+YQ++L +L+ G+ + E + FTVSQ+ K+++++ +N+VDIK
Sbjct: 88 AKKVSHKEKKLMKKQSEYQKQLESLNKGKTSSEGDQFTVSQADKSAAQQ-IQQENAVDIK 146
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
V+NFS+SA+G +LF NA+L I +GRRYGLVGPNGHGKTTLL+HIA R+L IP +ID+L C
Sbjct: 147 VDNFSISARGKDLFVNASLTITAGRRYGLVGPNGHGKTTLLKHIANRSLNIPPNIDVLLC 206
Query: 122 EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDES-GD--NQLRLTEVYDELKSIEAD 178
EQEV A D AV +VL AD R +LL+E KLE D + G+ NQ RLTEVY+EL+ I AD
Sbjct: 207 EQEVVADDTPAVEVVLKADVKRTELLEEQKKLEDDAARGNLKNQDRLTEVYEELQLIGAD 266
Query: 179 AAEPRARRILAGLGFT-----------------------TIYI---------PSSRVH-- 204
+AE RARRILAGLGFT ++I P++ +
Sbjct: 267 SAEARARRILAGLGFTREMQNRATKQFSGGWRMRVSLARALFIEPTLLLLDEPTNHLDLN 326
Query: 205 ------EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRK 258
++ WKKTLLVVSHDQSFL+N+CTD+IHLD +KLFYY+GNF+ FKKMYVQ+RK
Sbjct: 327 AVIWLDNYLQVWKKTLLVVSHDQSFLDNVCTDVIHLDNQKLFYYRGNFSQFKKMYVQRRK 386
Query: 259 ELTKEYELQEKQIREMKSQGMSKEKAER---QHSHKALKEQARKRVQKDDDDEPKELLEK 315
EL KEYE QEK+I++MK+ GMS + A + Q + ++ +K ++D+ P EL+++
Sbjct: 387 ELIKEYEKQEKKIKQMKASGMSSKTATKTTVQALTRKQQKNKQKLQGTEEDNGPAELIQR 446
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGK 375
P++YIVKF+FPNPP L PP+LGL++VTFGYPG +L + ++FG+DM SRVA+VGPNG+GK
Sbjct: 447 PKDYIVKFKFPNPPPLNPPILGLYNVTFGYPGQPLLFKNLDFGIDMSSRVAVVGPNGVGK 506
Query: 376 STFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
STFL LL G+LTP +GE R++ RLRIG+FDQHSGE L PD++P EYL +LFNL Y+ +R+
Sbjct: 507 STFLKLLCGDLTPLQGEARRNHRLRIGRFDQHSGEQLNPDESPVEYLQRLFNLNYQDARK 566
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
QLG FGL S+AHTI DLSGGQKARVALAEL L PD+LILDEPTNNLDIESIDALAEA
Sbjct: 567 QLGSFGLVSHAHTIKNSDLSGGQKARVALAELCLRAPDVLILDEPTNNLDIESIDALAEA 626
Query: 496 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPS 555
I Y+GGVI+VSHDERLIRET+C+LW +E K I + +GDF+DYR++LL SLGE V NPS
Sbjct: 627 ISEYEGGVIIVSHDERLIRETNCQLWVIEHKGIEEIDGDFEDYRKELLESLGET-VNNPS 685
Query: 556 VAAEQ 560
+AA Q
Sbjct: 686 IAARQ 690
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442762029|gb|JAA73173.1| Putative atp, partial [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/605 (57%), Positives = 453/605 (74%), Gaps = 48/605 (7%)
Query: 2 SKKLSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIK 61
SKK+SHKEKK +KKQS+YQ+++ +L+ G+ + E FTVSQ+ K+++++ ++ N++DIK
Sbjct: 101 SKKMSHKEKKLMKKQSEYQKQIESLNKGKTASDGEQFTVSQADKSAAQQQQLE-NAIDIK 159
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
VENFS+SA+G +LF NA+L I +GRRYGLVGPNGHGKTTLL+HIA R+L IP +ID+L C
Sbjct: 160 VENFSISARGKDLFVNASLTITAGRRYGLVGPNGHGKTTLLKHIANRSLNIPPNIDVLLC 219
Query: 122 EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN---QLRLTEVYDELKSIEAD 178
EQEV A + AV++VL AD R LL E KLE + SG N Q R+TEVY+EL+ I AD
Sbjct: 220 EQEVVADETPAVDVVLKADFKRTALLSELKKLEEESSGGNLKNQERITEVYEELQVIGAD 279
Query: 179 AAEPRARRILAGLGFT-----------------------TIYI---------PSSRVH-- 204
+AE RARRILAGLGFT +++ P++ +
Sbjct: 280 SAESRARRILAGLGFTREMQDRPTNHFSGGWRMRVSLARALFVEPTLLLLDEPTNHLDLN 339
Query: 205 ------EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRK 258
++ WKKTLLVVSHDQSFL+NICTD+IHLD +KLFYY+GNF+ FKKMYVQ+R+
Sbjct: 340 AVIWLDNYLQVWKKTLLVVSHDQSFLDNICTDVIHLDNQKLFYYRGNFSQFKKMYVQRRR 399
Query: 259 ELTKEYELQEKQIREMKSQGMSKEKAER---QHSHKALKEQARKRVQKDDDDEPKELLEK 315
EL KE+E QEK+I++MK G+S + A + Q + ++ +K ++D P +L++K
Sbjct: 400 ELVKEFEKQEKKIKQMKMSGVSGKVATKTTVQALTRKQQKNKQKLQGTEEDSGPPDLIQK 459
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGK 375
PR+YIVKF+FPNPP L PP+LGL++V FGYPG +L + ++FG+DM SRVA+VGPNG+GK
Sbjct: 460 PRDYIVKFKFPNPPPLNPPILGLYNVDFGYPGQPLLFKSLDFGIDMSSRVAVVGPNGVGK 519
Query: 376 STFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
STFL LL G+LTP +GE RK+ RLRIG+FDQHSGEHL +++P EYL +LFNL Y+ +R+
Sbjct: 520 STFLKLLCGDLTPLQGEARKNHRLRIGRFDQHSGEHLNSEESPVEYLQRLFNLNYQDARK 579
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
QLG FGL SYAHTI DLSGGQKARVALAEL L P++LILDEPTNNLDIESIDALAEA
Sbjct: 580 QLGSFGLVSYAHTIKNGDLSGGQKARVALAELCLKAPEVLILDEPTNNLDIESIDALAEA 639
Query: 496 IKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPS 555
I Y+GGVI+VSHDERLIRET+C+LW +E K I + +GDF+DYR++LL SLGE +V NPS
Sbjct: 640 IGCYEGGVIIVSHDERLIRETNCQLWVIEHKGIEEIDGDFEDYRKELLESLGE-IVNNPS 698
Query: 556 VAAEQ 560
+AA Q
Sbjct: 699 IAARQ 703
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076670|ref|XP_971562.1| PREDICTED: similar to AGAP012249-PA [Tribolium castaneum] gi|270002367|gb|EEZ98814.1| hypothetical protein TcasGA2_TC004420 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/589 (59%), Positives = 441/589 (74%), Gaps = 51/589 (8%)
Query: 19 YQQELSAL--SGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELF 75
Y++++ L GGQG +L+ NFTVSQS K + + + ++ N+VDIK+ENFS+SAKG +LF
Sbjct: 215 YEKQMETLLKKGGQGHSDLDSNFTVSQSQKTAGQLAQLE-NAVDIKIENFSISAKGNDLF 273
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI 135
NANL IA+GR YGLVGPNGHGKTTLLRHIA RA AIP +ID+LYCEQEV A D SAV
Sbjct: 274 VNANLLIANGRHYGLVGPNGHGKTTLLRHIAQRAFAIPPNIDILYCEQEVVADDFSAVES 333
Query: 136 VLSADKNRVKLLKECSKLERD-ESGD--NQLRLTEVYDELKSIEADAAEPRARRILAGLG 192
VL +D R +LL+EC KLE +GD Q RL EVY ELK+I AD+AEP+ARRILAGLG
Sbjct: 334 VLKSDVKRTELLEECKKLEDAFNTGDLGVQDRLNEVYAELKAIGADSAEPKARRILAGLG 393
Query: 193 FT-----------------------TIYI---------PSSRVH--------EIMRTWKK 212
FT +YI P++ + ++ WKK
Sbjct: 394 FTKEMQDRATKNFSGGWRMRVSLARALYIEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKK 453
Query: 213 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIR 272
TLL+VSHDQSFL+N+C +IIHLD +KL+YYKGN+++FKKMY QKRKE+ KEYE QEK+++
Sbjct: 454 TLLIVSHDQSFLDNVCNEIIHLDNQKLYYYKGNYSMFKKMYQQKRKEMIKEYEKQEKRLK 513
Query: 273 EMKSQGMSKEKAERQHSHKALKEQARKRVQ---KDDDDEPKELLEKPREYIVKFRFPNPP 329
E+K+ G SK++AE++ ++Q + R + ++D+ P ELL+KP+EY VKF FP PP
Sbjct: 514 ELKAHGSSKKQAEKKQKEALTRKQEKNRTKMQKQEDETAPTELLQKPKEYFVKFSFPEPP 573
Query: 330 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 389
L PP+LGLH+VTF Y G K L +FG+DM SRVA+VGPNG+GKSTFL LL G+L P
Sbjct: 574 PLQPPILGLHNVTFAYSGQKPLFRNTDFGIDMSSRVAIVGPNGVGKSTFLKLLTGDLDPQ 633
Query: 390 KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 449
+GE+RK+ RLRIG+FDQHSGEHL ++TP EYLM+LF+LPYEKSR+QLG FGL S+AHTI
Sbjct: 634 QGEVRKNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKSRKQLGTFGLASHAHTI 693
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
++DLSGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALAEAI ++ GGVI+VSHD
Sbjct: 694 KMKDLSGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALAEAINDFSGGVIIVSHD 753
Query: 510 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
ERLIRETDC L+ +E + I + +GDFDDYR++LL SLGE ++ +PS+AA
Sbjct: 754 ERLIRETDCALYVIEDQTINELDGDFDDYRKELLESLGE-VINSPSIAA 801
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156544038|ref|XP_001604621.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/584 (59%), Positives = 438/584 (75%), Gaps = 49/584 (8%)
Query: 22 ELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANL 80
E+ +GGQG ELE NFTVSQS + ++ +N+VDIKVENFS++AKG ELF NANL
Sbjct: 40 EMLTKAGGQGHSELESNFTVSQS-QTQNRGGQQLENAVDIKVENFSIAAKGKELFTNANL 98
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
IA GRRYGLVGPNGHGKTTLLRHIA RA IP SID+LYCEQEV A D AV +VL AD
Sbjct: 99 LIAQGRRYGLVGPNGHGKTTLLRHIAKRAFNIPPSIDILYCEQEVVADDTPAVEVVLKAD 158
Query: 141 KNRVKLLKECSKLE-RDESGDN--QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-- 195
+L +EC KLE + E+GD Q RL EVY+ELK+I AD+AEPRARRILAGLGF+
Sbjct: 159 VKCNELQEECKKLEEKVEAGDTTVQDRLQEVYEELKAIGADSAEPRARRILAGLGFSKEM 218
Query: 196 -------------IYIPSSR-------------------------VHEIMRTWKKTLLVV 217
+ + +R + ++ WKKTLLVV
Sbjct: 219 QNRATKNFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLVV 278
Query: 218 SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQ 277
SHDQSFL+N+CTDI+HLD +KLFYYKGN+++FKKMY QK KE+ K YE QEK+I+ MKSQ
Sbjct: 279 SHDQSFLDNVCTDIMHLDQQKLFYYKGNYSMFKKMYSQKCKEMLKAYEQQEKRIKNMKSQ 338
Query: 278 GMSKEKAERQHSHKALKEQARKR--VQKDDDDE-PKELLEKPREYIVKFRFPNPPYLPPP 334
G SK++AE++ ++Q + + +QK ++D P ELL+KPREY+VKF FP+PP L PP
Sbjct: 339 GQSKKQAEKKQKEALTRKQEKNKTKIQKQEEDTGPTELLQKPREYLVKFSFPDPPPLQPP 398
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+LGLH+V+F +PG K L V+FG+D+ SRVA+VGPNG+GK+TFL LL GEL+PNKGEL
Sbjct: 399 ILGLHEVSFAFPGQKPLFIDVDFGIDLSSRVAIVGPNGVGKTTFLKLLVGELSPNKGELI 458
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
++ RLRIG+FDQHSGEHL ++TP EYL++LF+LPYEK+R+QLG FGL S+AHTI ++DL
Sbjct: 459 RNHRLRIGRFDQHSGEHLTAEETPTEYLIRLFDLPYEKARKQLGTFGLSSHAHTIKMKDL 518
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514
SGGQKARVALAEL LN PD+LILDEPTNNLDIESIDAL EAI Y+GGV++VSHDERLIR
Sbjct: 519 SGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALGEAITRYKGGVVIVSHDERLIR 578
Query: 515 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
+T+C L+ +E + I + +GDFDDYR++LL SLGE +V NPS+AA
Sbjct: 579 DTECCLYVIENQTINEIDGDFDDYRKELLESLGE-IVNNPSIAA 621
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383848444|ref|XP_003699860.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/584 (59%), Positives = 436/584 (74%), Gaps = 49/584 (8%)
Query: 22 ELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANL 80
E+ +GGQG ELE NFT+SQ+ ++ N+VDIKVENFS++AKG ELF NA+L
Sbjct: 45 EMLTKTGGQGHSELESNFTLSQTQTQQRTNQQLE-NAVDIKVENFSIAAKGKELFTNASL 103
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
IA GRRYGLVGPNGHGKTTLLRHIA RA AIP +ID+LYCEQEV A D AV +VL+AD
Sbjct: 104 LIAQGRRYGLVGPNGHGKTTLLRHIANRAFAIPPNIDVLYCEQEVIADDTPAVEVVLNAD 163
Query: 141 KNRVKLLKECSKLER-DESGDN--QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-- 195
+L EC KLE E GD Q RL EVY+ELK I AD+AEPRARRILAGLGF+
Sbjct: 164 IKCKELQAECKKLEELVEQGDTSVQSRLQEVYEELKIIGADSAEPRARRILAGLGFSRAM 223
Query: 196 -------------IYIPSSR-------------------------VHEIMRTWKKTLLVV 217
+ + +R + ++ WKKTLL+V
Sbjct: 224 QDRATKNFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLIV 283
Query: 218 SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQ 277
SHDQSFL+N+CTDIIHLD +KLFYYKGN+++FKKMYVQKRKE+ K YE QEK+++++K+
Sbjct: 284 SHDQSFLDNVCTDIIHLDQQKLFYYKGNYSMFKKMYVQKRKEMIKAYEKQEKRLKDLKAS 343
Query: 278 GMSKEKAERQHSHKALKEQARKRVQ---KDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 334
G SK++AE++ ++Q + R + ++DD P ELL+KPR+YIVKF FP+PP L PP
Sbjct: 344 GQSKKQAEKKQKEALTRKQEKNRTKMQKQEDDTAPIELLQKPRDYIVKFSFPDPPPLQPP 403
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+LGLH+VTF Y G K L +V+FG+D+ SR+A+VGPNG+GKSTFL LL G+L PN+GE+
Sbjct: 404 ILGLHNVTFAYEGQKPLFIEVDFGMDLNSRIAIVGPNGVGKSTFLKLLTGDLQPNRGEVS 463
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
K+ RLRIGKFDQHSGEHL ++TP EYLM+LFNLPYEK+R+QLG FGL S+AHTI ++DL
Sbjct: 464 KNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFNLPYEKARKQLGTFGLSSHAHTIKMKDL 523
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514
SGGQKARVALAEL LN PD++ILDEPTNNLDIESIDALA+AI +Y+GGVI+VSHDERLIR
Sbjct: 524 SGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGVIIVSHDERLIR 583
Query: 515 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
ET+C L+ +E + I + +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 584 ETECCLYVIENQQINEIDGDFDDYRKELLESLGE-VINNPSIAA 626
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|391330522|ref|XP_003739709.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Metaseiulus occidentalis] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/602 (56%), Positives = 437/602 (72%), Gaps = 48/602 (7%)
Query: 5 LSHKEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVEN 64
LS KE+K LKKQ ++Q+ L AL + + + FTVSQ+ K++++++ ++ ++VD+KVEN
Sbjct: 168 LSRKERKALKKQREFQKALDALGAPKSSTDTTQFTVSQADKSAAQQAQME-HAVDVKVEN 226
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124
FS+SA+G +LF NA+L IA GRRYGLVGPNGHGKTTLL+HIA R+L IPSSID+L CEQE
Sbjct: 227 FSISARGKDLFVNASLLIAKGRRYGLVGPNGHGKTTLLKHIANRSLNIPSSIDVLLCEQE 286
Query: 125 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESG---DNQLRLTEVYDELKSIEADAAE 181
V A + AV V+ AD R++LL E + LE+ + +Q RL EVY+EL++I AD+AE
Sbjct: 287 VVADETPAVQAVIKADTRRLRLLDEQADLEKAVAAGKTKDQERLNEVYEELQAIGADSAE 346
Query: 182 PRARRILAGLGF------------------------------TTIYIPSSRVH------- 204
PRARRILAGLGF T + + H
Sbjct: 347 PRARRILAGLGFDKEMQDRATNQFSGGWRMRVSLARALFMEPTLLLLDEPTNHLDLNAVI 406
Query: 205 ---EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
++ WKKTLLVVSHDQSFL+N+CTDI+HLD +KLFYYKGN+T FKKM+ QK++E+
Sbjct: 407 WLDNYLQGWKKTLLVVSHDQSFLDNVCTDIVHLDNQKLFYYKGNYTQFKKMHEQKKREIL 466
Query: 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR---VQKDDDDEPKELLEKPRE 318
KEYE QE++++ +K G S ++A ++ ++Q + R V+K++D P L+EKPR+
Sbjct: 467 KEYEKQERKLKALKQGGQSNKQATKKTVEALTRKQQKGRSVNVKKEEDAGPASLIEKPRD 526
Query: 319 YIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 378
YIVKF FPNPP L PP+LGL++V F YPG L + ++FG+DM SRVA+VGPNG+GKSTF
Sbjct: 527 YIVKFSFPNPPPLQPPILGLYNVDFAYPGQPYLFKNIDFGIDMTSRVAIVGPNGVGKSTF 586
Query: 379 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 438
L LL G+LTP GE R++ RLRIGKFDQHSGEHL P +TP EYL +LFNL Y+ +R+QLG
Sbjct: 587 LKLLVGDLTPTVGEARRNHRLRIGKFDQHSGEHLNPAETPVEYLQRLFNLNYQDARKQLG 646
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
FGL SYAHTI DLSGGQKARVALAEL L +PD+LILDEPTNNLDIESIDALAEAI
Sbjct: 647 TFGLVSYAHTILNSDLSGGQKARVALAELCLKSPDVLILDEPTNNLDIESIDALAEAISE 706
Query: 499 YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
Y+GGVI+VSHDERLIRET+C+LW +E + I + NGDFDDYR ++L LGE + NPSV A
Sbjct: 707 YEGGVIIVSHDERLIRETNCQLWIIEHRGIDEINGDFDDYRREILEQLGE-QINNPSVVA 765
Query: 559 EQ 560
+Q
Sbjct: 766 KQ 767
|
Source: Metaseiulus occidentalis Species: Metaseiulus occidentalis Genus: Metaseiulus Family: Phytoseiidae Order: Mesostigmata Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193676397|ref|XP_001947037.1| PREDICTED: ATP-binding cassette sub-family F member 1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/612 (55%), Positives = 444/612 (72%), Gaps = 57/612 (9%)
Query: 2 SKKLSHKEKKQLKKQSKYQQELSALS--GGQGTDEL-ENFTVSQSSKASSKRSTVDDNSV 58
S K+SHKEKK++KK+ +YQ+++ ++ GGQG EL NF+VSQ K + + + ++ ++V
Sbjct: 409 SDKISHKEKKKMKKEMEYQKQMDLMTKKGGQGHSELGANFSVSQIQKTAGQLAAME-HAV 467
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
DIK+++FS++AKG +LF NA+L IA GRRYGLVGPNGHGKTTLLRHIA R +P ID+
Sbjct: 468 DIKIDSFSIAAKGQDLFVNASLLIAQGRRYGLVGPNGHGKTTLLRHIAERLFDVPPGIDI 527
Query: 119 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLER-DESG---DNQLRLTEVYDELKS 174
LYCEQEV A + +AV VL AD +LL EC +LE E G D RL EVYDELK
Sbjct: 528 LYCEQEVVADETTAVRAVLRADTRCTELLAECKRLEEAQEKGTGEDVTERLNEVYDELKV 587
Query: 175 IEADAAEPRARRILAGLGFTT---------------IYIPSSR----------------- 202
+ AD+AEPRARRILAGLGF+ + + +R
Sbjct: 588 LGADSAEPRARRILAGLGFSAAMQDRATKDFSGGWRMRVSLARALFLEPTLLLLDEPTNH 647
Query: 203 --------VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYV 254
+ ++ WKKTLLVVSHDQSFL+N+C +IIHLD K+LFYYKGN+T+FKKM+
Sbjct: 648 LDLNAVIWLDNYLQGWKKTLLVVSHDQSFLDNVCNEIIHLDQKRLFYYKGNYTMFKKMHS 707
Query: 255 QKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR--------VQKDDD 306
QK+KE KEYE QEK+++EMK QG SK++AE++ ++Q + + + DD+
Sbjct: 708 QKKKETIKEYEKQEKRLKEMKQQGQSKKQAEKKQKEVLTRKQEKNKGKPGKGAGIDDDDN 767
Query: 307 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVA 366
EP +LL+KPR+Y VKF FP+P L PP+LGLH +F YP K L + V+FG+D+ SRVA
Sbjct: 768 AEPTQLLQKPRDYNVKFSFPDPSPLQPPILGLHSTSFAYPNQKPLFKNVDFGVDLNSRVA 827
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426
+VGPNG+GKSTFL LL G+L P GE+RK+ R+++GKFDQHSGEHL ++TP EYLM+LF
Sbjct: 828 IVGPNGVGKSTFLKLLTGDLQPTIGEMRKNHRMKLGKFDQHSGEHLTAEETPAEYLMRLF 887
Query: 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+LPYEK+R+QLG FGL +AHTI ++DLSGGQKARVALAEL LN PD++ILDEPTNNLDI
Sbjct: 888 DLPYEKARKQLGTFGLAGHAHTIRMKDLSGGQKARVALAELCLNAPDVIILDEPTNNLDI 947
Query: 487 ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 546
ESIDALAEAI +Y+GGVI+VSHDERLIR+T+C LW +E + I + +GDFDDYR++LL L
Sbjct: 948 ESIDALAEAINDYKGGVIIVSHDERLIRDTECTLWVIEDQTINEVDGDFDDYRKELLECL 1007
Query: 547 GEAMVYNPSVAA 558
GE ++ +PS+AA
Sbjct: 1008 GE-VINSPSIAA 1018
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340711562|ref|XP_003394344.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family F member 1-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/592 (58%), Positives = 439/592 (74%), Gaps = 51/592 (8%)
Query: 16 QSKYQQELSALS--GGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGV 72
Q +Y++ + L+ GGQG ELE NFTVSQ+ ++ N+VDIKVENFS++AKG
Sbjct: 37 QQEYEKTMEMLTKTGGQGHSELETNFTVSQTQSQQRGNQQLE-NAVDIKVENFSIAAKGK 95
Query: 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 132
ELF NA+L IA GRRYGLVGPNGHGKTTLLRHIA RA AIP +ID+LYCEQEV A D A
Sbjct: 96 ELFTNASLLIAQGRRYGLVGPNGHGKTTLLRHIAKRAFAIPPNIDVLYCEQEVIADDTPA 155
Query: 133 VNIVLSADKNRVKLLKECSKLER-DESGDN--QLRLTEVYDELKSIEADAAEPRARRILA 189
V +VL+AD +L+ EC KLE E GD Q RL EVY+ELK I AD+AEPRARRILA
Sbjct: 156 VEVVLNADIKCKELMTECKKLEELVEQGDTSVQNRLQEVYEELKIIGADSAEPRARRILA 215
Query: 190 GLGFTT---------------IYIPSSR-------------------------VHEIMRT 209
GLGF+ + + +R + ++
Sbjct: 216 GLGFSRAMQDRATKNFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQA 275
Query: 210 WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK 269
WKKTLL+VSHDQSFL+N+CTDIIHLD +KLFYYKGN+++FKKMY QK+KE+ K YE QEK
Sbjct: 276 WKKTLLIVSHDQSFLDNVCTDIIHLDQQKLFYYKGNYSMFKKMYEQKKKEMIKAYEKQEK 335
Query: 270 QIREMKSQGMSKEKAERQHSHKALKEQARKRVQ---KDDDDEPKELLEKPREYIVKFRFP 326
+++++K+ G SK++AE++ ++Q + R + ++DD+ P ELL+KPR+YIVKF FP
Sbjct: 336 RLKDLKASGQSKKQAEKKQKEALTRKQEKNRTKMQKQEDDNAPAELLQKPRDYIVKFSFP 395
Query: 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
+PP L PP+LGLH+VTF Y G K L V+FG+D+ SR+A+VGPNG+GKSTFL LL +L
Sbjct: 396 DPPPLQPPILGLHNVTFHYEGQKSLFIDVDFGIDLSSRIAIVGPNGVGKSTFLKLLTADL 455
Query: 387 TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 446
P KGEL ++ RLRIGKFDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL S+A
Sbjct: 456 QPVKGELIRNHRLRIGKFDQHSGEHLTAEETPSEYLMRLFDLPYEKARKQLGTFGLSSHA 515
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILV 506
HTI ++DLSGGQKARVALAEL LN PD++ILDEPTNNLDIESIDALA+AI +Y+GGVI+V
Sbjct: 516 HTIKMKDLSGGQKARVALAELCLNAPDVVILDEPTNNLDIESIDALADAINDYKGGVIIV 575
Query: 507 SHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
SHDERLIR+T+C L+ +E + I + +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 576 SHDERLIRDTECCLYVIENQQINEIDGDFDDYRKELLESLGE-VINNPSIAA 626
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332022454|gb|EGI62762.1| ATP-binding cassette sub-family F member 1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/584 (58%), Positives = 430/584 (73%), Gaps = 49/584 (8%)
Query: 22 ELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANL 80
E+ +GGQG ELE NFT+SQS +D N+VDIKVENFS++AKG ELF NA+L
Sbjct: 70 EMLTKAGGQGHSELESNFTISQSQTQQRGNQQLD-NAVDIKVENFSIAAKGKELFTNASL 128
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
IA GRRYGLVGPNGHGKTTLLRHIA RA IP +ID+LYCEQEV A D AV +VL+AD
Sbjct: 129 LIAQGRRYGLVGPNGHGKTTLLRHIAKRAFNIPPTIDVLYCEQEVIADDTPAVEVVLNAD 188
Query: 141 KNRVKLLKECSKLER-DESGDN--QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-- 195
+L EC KLE E GD Q RL EVYDELK+I AD+AEPRARRILAGLGF
Sbjct: 189 VKCKELQAECKKLEELTEQGDTNVQNRLQEVYDELKAIGADSAEPRARRILAGLGFNRAM 248
Query: 196 -------------IYIPSSR-------------------------VHEIMRTWKKTLLVV 217
+ + +R + ++ WKKTLLVV
Sbjct: 249 QNRATKNFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLVV 308
Query: 218 SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQ 277
SHDQSFL+N+CTD+IHLD +KLFYYKGN+++FKKMYVQKRKE+ K YE QEK+++++K+
Sbjct: 309 SHDQSFLDNVCTDVIHLDQQKLFYYKGNYSMFKKMYVQKRKEMVKAYEKQEKRLKDLKAA 368
Query: 278 GMSKEKAERQHSHKALKEQARKRVQ---KDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 334
G SK++AE++ ++Q + R + +++D P ELL++PREYIVKF FP+PP L PP
Sbjct: 369 GQSKKQAEKKQKETLTRKQEKNRTKMQKQEEDTGPTELLQRPREYIVKFSFPDPPPLQPP 428
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+LGL +VTFGY G K L +FG+D+ SRVA++GPNG+GKSTFL LL ++T KGE+
Sbjct: 429 ILGLQNVTFGYEGQKPLFIDADFGIDLNSRVAILGPNGVGKSTFLKLLMSDITSQKGEIT 488
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
K+ RLRIG+FDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL S+AHTI ++DL
Sbjct: 489 KNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLSSHAHTIKMKDL 548
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514
SGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALA+AI +Y+GGVI+VSHDERLIR
Sbjct: 549 SGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALADAINDYKGGVIIVSHDERLIR 608
Query: 515 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
+T+C L+ +E + I +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 609 DTECCLYVIENQQINAIDGDFDDYRKELLESLGE-VINNPSIAA 651
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322795259|gb|EFZ18064.1| hypothetical protein SINV_01158 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/584 (58%), Positives = 430/584 (73%), Gaps = 49/584 (8%)
Query: 22 ELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANL 80
E+ +GGQG ELE NFT+SQS +D N+VDIKVENFS++AKG ELF NA+L
Sbjct: 60 EMLTKAGGQGHSELETNFTISQSQTQQRGNQQLD-NAVDIKVENFSIAAKGKELFTNASL 118
Query: 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSAD 140
IA GRRYGLVGPNGHGKTTLLRHIA RA IP +ID+LYCEQEV A D AV +VL+AD
Sbjct: 119 LIAQGRRYGLVGPNGHGKTTLLRHIAKRAFNIPPTIDVLYCEQEVIADDTPAVEVVLNAD 178
Query: 141 KNRVKLLKECSKLER-DESGDN--QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-- 195
+L EC KLE E GD Q RL EVYDELK+I AD+AEPRARRILAGLGF
Sbjct: 179 VKCKELQAECKKLEELTEQGDTTVQNRLQEVYDELKAIGADSAEPRARRILAGLGFNRAM 238
Query: 196 -------------IYIPSSR-------------------------VHEIMRTWKKTLLVV 217
+ + +R + ++ WKKTLLVV
Sbjct: 239 QNRATKNFSGGWRMRVSLARALFLEPTLLLLDEPTNHLDLNAVIWLDNYLQGWKKTLLVV 298
Query: 218 SHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQ 277
SHDQSFL+N+CTD+IHLD +KL+YYKGN+++FKKMYVQKRKE+ K YE QEK+++++K+
Sbjct: 299 SHDQSFLDNVCTDVIHLDQQKLYYYKGNYSMFKKMYVQKRKEMVKAYEKQEKRLKDLKAA 358
Query: 278 GMSKEKAERQHSHKALKEQARKRVQ---KDDDDEPKELLEKPREYIVKFRFPNPPYLPPP 334
G SK++AE++ ++Q + R + +++D P ELL++PREY+VKF FP+PP L PP
Sbjct: 359 GQSKKQAEKKQKEALTRKQEKNRTKMQKQEEDTGPTELLQRPREYVVKFTFPDPPPLQPP 418
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+LGL +VTFGY G K L +FG+D+ SRVA++GPNG+GKSTFL LL ++TP KGE+
Sbjct: 419 ILGLQNVTFGYEGQKPLFIDADFGIDLSSRVAILGPNGVGKSTFLKLLMSDITPQKGEIT 478
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
K+ RLRIG+FDQHSGEHL ++TP EYLM+LF+LPYEK+R+QLG FGL S+AHTI ++DL
Sbjct: 479 KNHRLRIGRFDQHSGEHLTAEETPAEYLMRLFDLPYEKARKQLGTFGLSSHAHTIKMKDL 538
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514
SGGQKARVALAEL LN PD+LILDEPTNNLDIESIDALA+AI Y+GGVI+VSHDERLIR
Sbjct: 539 SGGQKARVALAELCLNAPDVLILDEPTNNLDIESIDALADAINEYKGGVIIVSHDERLIR 598
Query: 515 ETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
+T+C L+ +E + I +GDFDDYR++LL SLGE ++ NPS+AA
Sbjct: 599 DTECCLYVIENQQINAIDGDFDDYRKELLESLGE-VINNPSIAA 641
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 568 | ||||||
| FB|FBgn0030321 | 901 | CG1703 [Drosophila melanogaste | 0.617 | 0.389 | 0.6 | 2.3e-157 | |
| ZFIN|ZDB-GENE-050517-31 | 877 | abcf1 "ATP-binding cassette, s | 0.619 | 0.401 | 0.528 | 8e-142 | |
| UNIPROTKB|K7GL02 | 842 | ABCF1 "ATP-binding cassette, s | 0.619 | 0.418 | 0.536 | 7.1e-141 | |
| UNIPROTKB|Q767L0 | 807 | ABCF1 "ATP-binding cassette su | 0.619 | 0.436 | 0.536 | 7.1e-141 | |
| WB|WBGene00006512 | 622 | abcf-1 [Caenorhabditis elegans | 0.605 | 0.553 | 0.535 | 1.2e-140 | |
| UNIPROTKB|E1BGH0 | 845 | ABCF1 "Uncharacterized protein | 0.619 | 0.416 | 0.533 | 1.9e-140 | |
| UNIPROTKB|F6Y789 | 841 | ABCF1 "Uncharacterized protein | 0.619 | 0.418 | 0.531 | 1.9e-140 | |
| UNIPROTKB|E2R3F9 | 842 | ABCF1 "Uncharacterized protein | 0.619 | 0.418 | 0.531 | 1.9e-140 | |
| UNIPROTKB|J9NXH0 | 787 | ABCF1 "Uncharacterized protein | 0.619 | 0.447 | 0.531 | 1.9e-140 | |
| RGD|620286 | 839 | Abcf1 "ATP-binding cassette, s | 0.619 | 0.419 | 0.539 | 2.4e-140 |
| FB|FBgn0030321 CG1703 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.3e-157, Sum P(2) = 2.3e-157
Identities = 213/355 (60%), Positives = 273/355 (76%)
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYEL 266
++ WKKTLL+VSHDQSFL+N+C +IIHLD KKL YYKGN+++FKKMYVQKR+E+ KEYE
Sbjct: 542 LQGWKKTLLIVSHDQSFLDNVCNEIIHLDQKKLQYYKGNYSMFKKMYVQKRREMIKEYEK 601
Query: 267 QEKQIREMKSQGMSKEKAERQHSHKALKEQAR---KRVQXXXXXXXXXXXXXXREYIVKF 323
QEK++RE+K+ G SK+ AE++ ++Q + K+ + +EYIVKF
Sbjct: 602 QEKRLRELKAHGQSKKAAEKKQKESLTRKQEKNKSKQQKQDEDEGPQELLARPKEYIVKF 661
Query: 324 RFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 383
RF +LG+H+VTF +P K L KV+FG+D+ SRVA+VGPNG+GKSTFL LL
Sbjct: 662 RFPEPSQLQPPILGVHNVTFAFPSQKPLFIKVDFGIDLTSRVAIVGPNGVGKSTFLKLLL 721
Query: 384 GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
GEL P +GE RK+ RL +G+FDQHSGEHL +++ EYL +LFNLP+EK+R+ LG FGL
Sbjct: 722 GELEPQEGEQRKNHRLHVGRFDQHSGEHLTAEESAAEYLQRLFNLPHEKARKALGSFGLV 781
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 503
S+AHTI ++DLSGGQKARVALAEL L+ PD+LILDEPTNNLDIESIDALAEAI Y+GGV
Sbjct: 782 SHAHTIKMKDLSGGQKARVALAELCLSAPDVLILDEPTNNLDIESIDALAEAINEYEGGV 841
Query: 504 ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNPSVAA 558
I+VSHDERLIRET C L+ +E + I + G+FDDYR+++L SLGE +V NPSV A
Sbjct: 842 IIVSHDERLIRETGCTLYVIEDQTINEIVGEFDDYRKEVLDSLGE-VVNNPSVVA 895
|
|
| ZFIN|ZDB-GENE-050517-31 abcf1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 8.0e-142, Sum P(2) = 8.0e-142
Identities = 187/354 (52%), Positives = 255/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ +++WKKTLL+VSHDQSFL+++CTDIIHLD +KL+YY+GN+ FKKMY+QK+KEL K
Sbjct: 522 LNNYLQSWKKTLLIVSHDQSFLDDVCTDIIHLDNQKLYYYRGNYLTFKKMYIQKQKELQK 581
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+Y+ QEK+++++K+ G S ++AE+Q ++Q +K+ Q +EY
Sbjct: 582 QYDKQEKKLKDLKAGGKSTKQAEKQTKEALTRKQQKGKKKSQEEESHEATELLKRPKEYT 641
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
VKF F +LGLH V FGY G K L + V+FG+DMESR+ +VGPNG+GKST L
Sbjct: 642 VKFTFPNPPPLSPPILGLHSVDFGYEGQKPLFKNVDFGIDMESRICIVGPNGVGKSTLLL 701
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+L P KGE+RK+ RL++G F+Q + L D+ EYL + FNL Y+ SR+ LG F
Sbjct: 702 LLTGKLNPTKGEMRKNHRLKVGFFNQQYADQLNMDEAATEYLQRNFNLQYQDSRKCLGRF 761
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV +EL+ PD+LILDEPTNNLDIESIDAL+EAI Y+
Sbjct: 762 GLESHAHTIQISKLSGGQKARVVFSELSCRQPDVLILDEPTNNLDIESIDALSEAINEYK 821
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET C+LW +E ++I + +GDF+DY+ ++L +LGE +V P
Sbjct: 822 GAVIIVSHDARLITETQCQLWVVEDQSINQIDGDFEDYKREVLEALGETLVNKP 875
|
|
| UNIPROTKB|K7GL02 ABCF1 "ATP-binding cassette, sub-family F (GCN20), member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
Identities = 190/354 (53%), Positives = 256/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 487 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 546
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 547 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYT 606
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 607 VRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 666
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 667 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 726
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 727 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 786
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 787 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 840
|
|
| UNIPROTKB|Q767L0 ABCF1 "ATP-binding cassette sub-family F member 1" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 7.1e-141, Sum P(2) = 7.1e-141
Identities = 190/354 (53%), Positives = 256/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 452 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 511
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 512 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYT 571
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 572 VRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 631
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 632 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 691
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 692 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 751
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 752 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVSRP 805
|
|
| WB|WBGene00006512 abcf-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 188/351 (53%), Positives = 254/351 (72%)
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYEL 266
++TWKKTLL+VSHDQ FL+++CTDIIHLD +KL Y+GN+TLFKK Y Q + K ++
Sbjct: 270 LQTWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHTYRGNYTLFKKQYAQDMQVHEKNFDQ 329
Query: 267 QEKQIREMKSQGMSKEKAE----RQHSHKALKEQARK--RVQXXXXXXXXXXXXXXREYI 320
Q+KQ++ MK +G S ++AE +Q ++KA K + +V +EY
Sbjct: 330 QQKQLKAMKKEGKSAKQAEEQVKQQMANKAKKGGKKNAGKVNDDDDAGAPELLQRRKEYS 389
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
VKF+F VLGLHDV FGY G VL +K+NFG+DM+SR+A+VGPNG+GKST L
Sbjct: 390 VKFQFPETTKLNPPVLGLHDVNFGY-GKDVLFKKLNFGVDMDSRIAIVGPNGVGKSTLLK 448
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G++ PN GELRK LRIG FDQH+ E L + TP E+L FN+ Y+++R+QLG
Sbjct: 449 LLIGKIDPNDGELRKHRTLRIGWFDQHANEALNGEQTPVEFLCTKFNIDYQEARKQLGTT 508
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL ++AHT+ I+DLSGGQK+RVAL L L PDI+ILDEPTNNLDIESIDALAEAI+++
Sbjct: 509 GLAAHAHTVKIKDLSGGQKSRVALCNLALGGPDIIILDEPTNNLDIESIDALAEAIRDFN 568
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 551
GGV++V+HDERL+ TDC LW +E + I + +GDF+DY++++L +LGEA+V
Sbjct: 569 GGVVMVTHDERLVVRTDCNLWVVENQGIDEIDGDFEDYKKEVLDALGEALV 619
|
|
| UNIPROTKB|E1BGH0 ABCF1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 996 (355.7 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 189/354 (53%), Positives = 256/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 490 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 549
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 550 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPKEYT 609
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 610 VRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 669
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 670 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 729
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 730 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 789
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 790 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVSRP 843
|
|
| UNIPROTKB|F6Y789 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 188/354 (53%), Positives = 255/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 486 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 545
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 546 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEDSQEAPELLKRPKEYT 605
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH TFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 606 VRFTFPNPPPLSPPVLGLHGATFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 665
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 666 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 725
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 726 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 785
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 786 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 839
|
|
| UNIPROTKB|E2R3F9 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 188/354 (53%), Positives = 255/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 487 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 546
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 547 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEDSQEAPELLKRPKEYT 606
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH TFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 607 VRFTFPNPPPLSPPVLGLHGATFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 666
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 667 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 726
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 727 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 786
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 787 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 840
|
|
| UNIPROTKB|J9NXH0 ABCF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 1.9e-140, Sum P(2) = 1.9e-140
Identities = 188/354 (53%), Positives = 255/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 432 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKKMYQQKQKELLK 491
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q +EY
Sbjct: 492 QYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEDSQEAPELLKRPKEYT 551
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH TFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 552 VRFTFPNPPPLSPPVLGLHGATFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 611
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP +GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 612 LLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGFNLPYQDARKCLGRF 671
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 672 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 731
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDF+DY+ ++L +LGE MV P
Sbjct: 732 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFEDYKREVLEALGEVMVNRP 785
|
|
| RGD|620286 Abcf1 "ATP-binding cassette, subfamily F (GCN20), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 2.4e-140, Sum P(2) = 2.4e-140
Identities = 191/354 (53%), Positives = 255/354 (72%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTK 262
++ ++ W+KTLL+VSHDQ FL+++CTDIIHLD ++L YY+GN+ FKKMY QK+KEL K
Sbjct: 484 LNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDTQRLHYYRGNYMTFKKMYQQKQKELLK 543
Query: 263 EYELQEKQIREMKSQGMSKEKAERQHSHKALKEQ--ARKRVQXXXXXXXXXXXXXXREYI 320
+YE QEK+++E+K+ G S ++AE+Q ++Q R++ Q REY
Sbjct: 544 QYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQDPPELLKRPREYT 603
Query: 321 VKFRFXXXXXXXXXVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
V+F F VLGLH VTFGY G K L + ++FG+DM+SR+ +VGPNG+GKST L
Sbjct: 604 VRFTFPDPPPLSPPVLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLL 663
Query: 381 LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
LL G+LTP GE+RK+ RL+IG F+Q E L ++TP EYL + FNLPY+ +R+ LG F
Sbjct: 664 LLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGFNLPYQDARKCLGRF 723
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL S+AHTI I LSGGQKARV AEL PD+LILDEPTNNLDIESIDAL EAI Y+
Sbjct: 724 GLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNNLDIESIDALGEAINEYK 783
Query: 501 GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEAMVYNP 554
G VI+VSHD RLI ET+C+LW +E++++ + +GDFDDY+ ++L +LGE MV P
Sbjct: 784 GAVIVVSHDARLITETNCQLWVVEEQSVSQIDGDFDDYKREVLEALGEVMVNRP 837
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q767L0 | ABCF1_PIG | No assigned EC number | 0.5084 | 0.9559 | 0.6728 | yes | N/A |
| Q7YR37 | ABCF1_PANTR | No assigned EC number | 0.5050 | 0.9559 | 0.6728 | yes | N/A |
| Q9M1H3 | AB4F_ARATH | No assigned EC number | 0.4019 | 0.9454 | 0.7427 | yes | N/A |
| Q6P542 | ABCF1_MOUSE | No assigned EC number | 0.5142 | 0.9612 | 0.6523 | yes | N/A |
| Q6MG08 | ABCF1_RAT | No assigned EC number | 0.5142 | 0.9612 | 0.6507 | yes | N/A |
| P43535 | GCN20_YEAST | No assigned EC number | 0.3460 | 0.9348 | 0.7061 | yes | N/A |
| O59672 | YB89_SCHPO | No assigned EC number | 0.3644 | 0.8433 | 0.6508 | yes | N/A |
| Q8SRV5 | ABCF3_ENCCU | No assigned EC number | 0.3409 | 0.7940 | 0.8140 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 568 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-132 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-115 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-63 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-52 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-47 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-45 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-37 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-36 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-32 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-32 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-32 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-31 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-30 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-27 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-26 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-25 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-25 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-24 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-24 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-24 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-24 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 8e-24 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-23 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-23 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-22 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-22 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-22 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 9e-22 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-22 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-21 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-21 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-20 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-20 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-20 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-20 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 9e-20 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-19 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-19 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-19 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-18 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-17 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-17 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-17 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-17 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-17 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-16 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-16 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-16 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-16 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-16 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-16 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-16 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-16 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-16 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-15 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-15 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-15 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-14 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-14 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-14 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-14 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-14 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-14 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-13 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-13 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-13 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-13 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-13 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-13 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-13 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-12 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 4e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-12 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-12 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-12 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-12 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-11 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-11 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-11 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-11 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-11 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-11 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-10 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-10 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-10 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 7e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-09 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-09 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-09 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-08 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-08 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-08 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-08 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-08 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 6e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-08 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 9e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-08 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-07 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-07 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 1e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-07 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-07 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-07 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-07 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 6e-07 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 7e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 9e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-07 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-06 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-06 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-06 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 3e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 5e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 7e-06 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 8e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 9e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-05 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-05 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-05 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-05 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-05 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-05 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-05 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-05 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 8e-05 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 8e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 9e-05 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 9e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-04 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-04 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-04 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-04 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-04 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-04 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-04 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-04 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 4e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 4e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 4e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-04 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 6e-04 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-04 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-04 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 8e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 9e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 9e-04 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.001 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 0.001 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.001 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 0.001 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.001 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.001 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.001 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.001 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.001 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 0.002 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 0.002 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 0.002 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 0.002 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.002 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.002 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.002 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.002 | |
| COG4637 | 373 | COG4637, COG4637, Predicted ATPase [General functi | 0.002 | |
| pfam13558 | 79 | pfam13558, SbcCD_C, Putative exonuclease SbcCD, C | 0.002 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 0.003 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 0.003 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 0.003 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 0.003 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.003 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 0.004 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 0.004 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 0.004 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 0.004 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.004 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 0.004 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.004 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.004 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.004 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 396 bits (1020), Expect = e-132
Identities = 171/531 (32%), Positives = 267/531 (50%), Gaps = 53/531 (9%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I +EN SL+ L N +L + G R GLVG NG GK+TLL+ +A +
Sbjct: 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 119 L------YCEQEVEA-SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE 171
Y QE + + ++ V+ +LL E + + + L E+
Sbjct: 63 PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL 122
Query: 172 LKSIEADAAEPRARRILAGLGFTTIYIPSS--------RVH---------EIM------- 207
L+ ++ E RA L GLGF P S RV +++
Sbjct: 123 LEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTN 182
Query: 208 --------------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 253
+ + T++VVSHD+ FL+N+ T I+ LD KL YKGN++ + +
Sbjct: 183 HLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQK 242
Query: 254 VQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313
++ ++ YE Q+K++ + + + + KA + KA ++R + + + E
Sbjct: 243 AERLRQEAAAYEKQQKELAKEQEW-IRRGKAAASKAKKA---KSRIKRLEKLEARLAEER 298
Query: 314 EKPREYIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNG 372
+ FRFP P L VL +V+ GY GG++LL+ ++F +D R+A+VGPNG
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNG 358
Query: 373 IGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYE 431
GKST L LL GEL P G ++ ++IG FDQH + L PD T E L + F + +
Sbjct: 359 AGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR-DELDPDKTVLEELSEGFPDGDEQ 417
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ R LG FG P+ LSGG+KAR+ LA+L L P++L+LDEPTN+LDIES++A
Sbjct: 418 EVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 492 LAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542
L EA+ +++G V+LVSHD + +W +E K + +F G ++DY E+
Sbjct: 478 LEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDK-VEEFEGGYEDYLEQK 527
|
Length = 530 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 358 bits (921), Expect = e-115
Identities = 206/604 (34%), Positives = 318/604 (52%), Gaps = 90/604 (14%)
Query: 8 KEKKQLKKQSKYQQELSALSGGQGTDELENFTVSQSSKASSKRSTVDDNSVDIKVENFSL 67
K K++ +++ +YQ ++ + + + + + DI +ENFS+
Sbjct: 134 KRKEERQREVQYQAHVAEMEAAKAGMPGVYVNHDGNGGGPAIK--------DIHMENFSI 185
Query: 68 SAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVE 126
S G +L +A++ +A GR YGLVG NG GKTT LR++A A+ IP + +L+ EQEV
Sbjct: 186 SVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245
Query: 127 ASDDSAVNIVLSADKNRVKLLKECSKL--------ERDESGDNQL-------------RL 165
D +A+ VL+ D R +LL+E ++L E+G + RL
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL 305
Query: 166 TEVYDELKSIEADAAEPRARRILAGLGFT-----------------------TIYI---- 198
E+Y L+ I+A AE RA ILAGL FT ++I
Sbjct: 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL 365
Query: 199 -----PSSRV--HEIM------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245
P++ + H ++ W KT +VVSH + FLN + TDI+HL +KL YKG+
Sbjct: 366 LLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425
Query: 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKS-----QGMSKEKAERQHSHKALKEQARKR 300
+ F++ ++ K K +E E+ M++ + +K + Q KAL
Sbjct: 426 YDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVD 485
Query: 301 VQKDDDDEPKELLEKPREYIVKFRFPNPPYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGL 359
+D D KF FP P P PP++ D +FGYPGG +L + +NFG+
Sbjct: 486 AVVNDPD-------------YKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGI 532
Query: 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPC 419
D++SR+A+VGPNGIGKST L L+ GEL P+ G + +S ++R+ F QH + L P
Sbjct: 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPL 592
Query: 420 EYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
Y+M+ F +P +K R LG FG+ P+ LSGGQK+RVA A++T P IL+LD
Sbjct: 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD 652
Query: 479 EPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538
EP+N+LD+++++AL + + +QGGV++VSHDE LI + ELW + + + F+G F DY
Sbjct: 653 EPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712
Query: 539 REKL 542
++ L
Sbjct: 713 KKTL 716
|
Length = 718 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 2e-63
Identities = 165/526 (31%), Positives = 263/526 (50%), Gaps = 77/526 (14%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLL----RHIATRA--LAIPSSIDLLYCEQEVEA 127
L NA I G++ GLVG NG GK+TLL I+ P + L + QE A
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA 75
Query: 128 SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRI 187
A+ V+ D+ +L E + +E D T ++ +L +I+A RA +
Sbjct: 76 LPQPALEYVIDGDREYRQL--EAQLHDANERNDGHAIAT-IHGKLDAIDAWTIRSRAASL 132
Query: 188 LAGLGFTTIYI--PSS--------RVH----EIMRT----------------------WK 211
L GLGF+ + P S R++ I R+ W
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWL 192
Query: 212 K----TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQ 267
K TL+++SHD+ FL+ I IIH++ + LF Y GN++ F+ + + YE Q
Sbjct: 193 KSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQQQAMYESQ 252
Query: 268 EKQIREMKSQGMSKEKAERQHSHKALK-EQARKRVQKDDDDEPKELLEKPREYIV----- 321
++++ ++S + + +A KA K +QA+ R++ +LE+ E I
Sbjct: 253 QERVAHLQSY-IDRFRA------KATKAKQAQSRIK---------MLER-MELIAPAHVD 295
Query: 322 ---KFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF 378
F F P LP P+L + V+ GY G +++L+ + L SR+ L+G NG GKST
Sbjct: 296 NPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTL 354
Query: 379 LNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-L 437
+ LL GEL P GE+ + +++G F QH E L D++P ++L +L E+ R L
Sbjct: 355 IKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYL 414
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
G FG T R SGG+KAR+ LA + P++L+LDEPTN+LD++ AL EA+
Sbjct: 415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474
Query: 498 NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLL 543
+++G +++VSHD L+R T +L+ + + F+GD +DY++ L
Sbjct: 475 DFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLS 520
|
Length = 638 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-52
Identities = 69/189 (36%), Positives = 100/189 (52%), Gaps = 48/189 (25%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L +++ Y GGK+LL+ ++ ++ R+ LVG NG GKST L L+ GEL P++G +
Sbjct: 3 LENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS 61
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 457
++IG F+Q LSGG
Sbjct: 62 TVKIGYFEQ-----------------------------------------------LSGG 74
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETD 517
+K R+ALA+L L NP++L+LDEPTN+LD+ESI+AL EA+K Y G VILVSHD + +
Sbjct: 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVA 134
Query: 518 CELWALEKK 526
++ LE
Sbjct: 135 TKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 8e-47
Identities = 78/244 (31%), Positives = 119/244 (48%), Gaps = 38/244 (15%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ L +++ Y G + LLE V+ L+ R+ LVG NG GKST L +L GEL P+ GE
Sbjct: 1 MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 393 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR----------------- 435
+ + LR+G Q L P+ T +Y+++ F E
Sbjct: 60 VTRPKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 436 -------QLGMFGLPSYAHTI-----------PIRDLSGGQKARVALAELTLNNPDILIL 477
+L + L + A P+ LSGG + RVALA L PD+L+L
Sbjct: 118 ELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537
DEPTN+LD+ESI+ L + +K Y G VI+VSHD + + L++ + + G++
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237
Query: 538 YREK 541
Y E+
Sbjct: 238 YLEQ 241
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-45
Identities = 146/542 (26%), Positives = 243/542 (44%), Gaps = 111/542 (20%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS----SID----LLYCEQEV 125
LF N +++ G RYGL+G NG GK+T ++ I L PS S+D L Q+
Sbjct: 16 LFENISVKFGGGNRYGLIGANGCGKSTFMK-ILGGDLE-PSAGNVSLDPNERLGKLRQDQ 73
Query: 126 EASDD-SAVNIVLSADKNRVKLLKECSKLERDE-------SGDNQLRLTEVYDELKSIEA 177
A ++ + ++ V+ +L + K ERD S ++ +++ ++ E+K E
Sbjct: 74 FAFEEFTVLDTVIMGHT---ELWE--VKQERDRIYALPEMSEEDGMKVADL--EVKFAEM 126
Query: 178 D--AAEPRARRILAGLGFTTI--YIPSSRV------------------------------ 203
D AE RA +L G+G Y S V
Sbjct: 127 DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNL 186
Query: 204 --------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ 255
+++ T++++SHD+ FLN++CT + LD +L Y GN+
Sbjct: 187 DINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY--------- 237
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAE--------RQHSHKALK-EQARKRVQKDDD 306
EY Q RE +K+KA+ + S A K +QA R ++ D
Sbjct: 238 ------DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDK 291
Query: 307 DEPKELLEKPREYIVKF-RFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV 365
+ +E+ KP F RF L L + ++T G+ L + +N L+ R+
Sbjct: 292 IKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERL 348
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
A++G NG+GK+T L L GEL P+ G ++ S IG + Q + F +D + L
Sbjct: 349 AIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDH-AYDFEND------LTL 401
Query: 426 FNLPY----EKSRRQL--GMFG-LPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILI 476
F+ E Q G G L I ++ LSGG+K R+ +L + P++L+
Sbjct: 402 FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461
Query: 477 LDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
+DEPTN++D+ESI++L A++ Y+G +I VSHD + + + + F+G ++
Sbjct: 462 MDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521
Query: 537 DY 538
+Y
Sbjct: 522 EY 523
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 6e-37
Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 82/370 (22%)
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYEL 266
++T++ +++ +SHD+SF+ N+ T I+ LD KL Y GN+ Y+ +++E + EL
Sbjct: 199 LKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ----YLLEKEEALRVEEL 254
Query: 267 Q-----------EKQIREMKSQGMSKEKAERQHSH------KALKEQARKR--------V 301
Q E IR QG+ KA R + KAL+ + +R +
Sbjct: 255 QNAEFDRKLAQEEVWIR----QGI---KARRTRNEGRVRALKALRRERSERREVMGTAKM 307
Query: 302 QKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDM 361
Q ++ ++ V + +V + G K L++ + +
Sbjct: 308 QVEEASRSGKI----------------------VFEMENVNYQIDG-KQLVKDFSAQVQR 344
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
++AL+GPNG GK+T L L+ G+L + G + +L + FDQH E L P+ T +
Sbjct: 345 GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE-LDPEKTVMD- 402
Query: 422 LMKLFNLPYEK--------SRRQLG-----MFGLPSYAHTIPIRDLSGGQKARVALAELT 468
NL K R LG +F P A T P++ LSGG++ R+ LA L
Sbjct: 403 -----NLAEGKQEVMVNGRPRHVLGYLQDFLFH-PKRAMT-PVKALSGGERNRLLLARLF 455
Query: 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKN- 527
L ++LILDEPTN+LD+E+++ L E + +YQG V+LVSHD + + T E W E
Sbjct: 456 LKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGK 515
Query: 528 IRKFNGDFDD 537
I ++ G + D
Sbjct: 516 IGRYVGGYHD 525
|
Length = 635 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-36
Identities = 96/352 (27%), Positives = 178/352 (50%), Gaps = 36/352 (10%)
Query: 213 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF-----KKMYVQKRKELTKEYELQ 267
T++ V+HD+ FL+N+ I+ LD + ++GN++ + K++ ++++E ++ L+
Sbjct: 210 TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALK 269
Query: 268 EKQ--IREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325
+ +R +K KA + L ++ +KR +E E+ YI
Sbjct: 270 RELEWVRSSPKARQAKSKARLARYEELLSQEFQKR------NETAEI------YI----- 312
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P P L V+ +++ G+ G K+L++ ++F L V ++GPNG GKST ++ G+
Sbjct: 313 PPGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ 371
Query: 386 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFNLPYE-KSRRQLG 438
P+ G ++ +++ DQ S + L P+ T E +++L E SR +G
Sbjct: 372 EQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIQLGK--REVPSRAYVG 428
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
F + LSGG++ RV LA+ + ++L+LDEPTN+LD+E++ AL EA+
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLE 488
Query: 499 YQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYREKLLTSLGEA 549
+ G +++SHD + + A E ++ F G++ +Y E LGE
Sbjct: 489 FAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGED 540
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 66/199 (33%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
L +++F YP G + L+ ++ + V +VGPNG GKST L LL G L P GE+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 395 -KSPR-LRIGKFDQHSG------EHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGM 439
K L + + + G + F T E + ++ LP E+ + L +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL LSGGQK RVA+A + +PDIL+LDEPT LD L E +K
Sbjct: 122 VGLEGLRDR-SPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 500 QG---GVILVSHDERLIRE 515
+ +I+V+HD L+ E
Sbjct: 181 KAEGKTIIIVTHDLDLLLE 199
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-32
Identities = 64/194 (32%), Positives = 102/194 (52%), Gaps = 20/194 (10%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
V+ + ++T Y G K L+ V+F ++ L+GPNG GK+T L +L G L P GE+
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 394 R---KSPRLRIGKFDQHSG-----EHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LG 438
K + G L+P+ T E L +L+ L E++ + L
Sbjct: 63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+FGL A+ +R LSGG K R+++A L++P++LILDEPT+ LD ES + E ++
Sbjct: 123 LFGLEDKANK-KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181
Query: 499 Y--QGG--VILVSH 508
+GG ++L +H
Sbjct: 182 LAKEGGVTILLSTH 195
|
Length = 293 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 8e-32
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ D+T Y GG +LE V+F + +A+VGPNG GKST L + G L P G +R
Sbjct: 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 398 ------RLRIGKFDQHSG-EHLFPDD------TPCEYLMKLFNLPYEKSRRQ-----LGM 439
R RIG Q + FP LF K+ + L
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLF-RRLSKADKAKVDEALER 119
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL A I +LSGGQ+ RV LA + +PD+L+LDEP +D ++ + + E ++
Sbjct: 120 VGLSELADR-QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 500 QG---GVILVSHD 509
+ +++V+HD
Sbjct: 179 RREGMTILVVTHD 191
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-31
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 30/202 (14%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P++ + ++T Y G + +LE ++ ++ AL+GPNG GKST L + G L P+ GE
Sbjct: 2 MPMIEVENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 393 LR--------KSPRLRIGKFDQHSG-EHLFP---DDT---PCEYLMKLFNLPYEKSRR-- 435
++ + RLRIG Q S + FP D F +K +
Sbjct: 61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 436 -----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++GM I +LSGGQK RV LA NPD+L+LDEP +D+
Sbjct: 121 DEALERVGMED---LRDR-QIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176
Query: 491 ALAEAIKNY--QG-GVILVSHD 509
+ + +K +G V++V+HD
Sbjct: 177 EIYDLLKELRQEGKTVLMVTHD 198
|
Length = 254 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-30
Identities = 62/191 (32%), Positives = 89/191 (46%), Gaps = 42/191 (21%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+V+F YPG K +L+ V+ + +VA+VGP+G GKST L LL P GE+
Sbjct: 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-- 60
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP------ 450
D L +L E R+ + Y P
Sbjct: 61 -------IDGVD----------------LRDLDLESLRKNIA------YVPQDPFLFSGT 91
Query: 451 IRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILV 506
IR+ LSGGQ+ R+A+A L +P ILILDE T+ LD E+ + EA++ G VI++
Sbjct: 92 IRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVI 151
Query: 507 SHDERLIRETD 517
+H IR+ D
Sbjct: 152 AHRLSTIRDAD 162
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-30
Identities = 63/181 (34%), Positives = 84/181 (46%), Gaps = 40/181 (22%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ +++F Y G L V+ L VALVGPNG GKST L + G L P GE+
Sbjct: 2 IENLSFRYGGRTALDN-VSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL--- 57
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG 457
I D + LP E+ RR++G + LSGG
Sbjct: 58 ---IDGKD-------------------IAKLPLEELRRRIGY-----------VPQLSGG 84
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLIR 514
Q+ RVALA L NPD+L+LDEPT+ LD S + L E ++ VI+V+HD L
Sbjct: 85 QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144
Query: 515 E 515
Sbjct: 145 L 145
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 8e-29
Identities = 104/374 (27%), Positives = 174/374 (46%), Gaps = 80/374 (21%)
Query: 213 TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT--LFKKMYVQKRKELTKEYELQEKQ 270
T++ V+HD+ FL+N+ I+ LD + ++GN++ L QK K L +EKQ
Sbjct: 212 TVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL-----EQKAKRL----AQEEKQ 262
Query: 271 IREMKSQ-GMSKE--------KAERQHSHKA--------LKEQARKRVQKDDDDEPKELL 313
E Q + +E KA RQ KA L E+ +KR +E E+
Sbjct: 263 --EAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLSEEYQKR------NETNEI- 312
Query: 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGI 373
+I P P L V+ +++ + G ++L++ ++F L V ++GPNG
Sbjct: 313 -----FI-----PPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGA 361
Query: 374 GKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY------LMKLFN 427
GKST ++ G+ P+ G ++ +++ DQ S + L P+ T E ++K+ N
Sbjct: 362 GKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQ-SRDALDPNKTVWEEISGGLDIIKVGN 420
Query: 428 LPYE-KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
E SR +G F + LSGG++ R+ LA+ ++L+LDEPTN+LD+
Sbjct: 421 --REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478
Query: 487 ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-----------KNIRKFNGDF 535
E++ AL EA+ + G +++SHD W L++ + F G+F
Sbjct: 479 ETLRALEEALLEFPGCAVVISHDR----------WFLDRIATHILAFEGDSQVEWFEGNF 528
Query: 536 DDYREKLLTSLGEA 549
+Y E LG
Sbjct: 529 QEYEEDKKRRLGAD 542
|
Length = 556 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-28
Identities = 70/214 (32%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+++F YPG K L+ V+ ++ RV L+GPNG GKST L LL G L P GE+
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLD 67
Query: 395 KSPRLRIGKFDQHSG------EHLFPDDTPCEYLM-KLFNLPYEKS------RRQLGMFG 441
S + + Q G + T + + L NL + L + G
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG 127
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 499
L P +LSGGQK RVA+A + P+IL+LDEPT LD + L E +K
Sbjct: 128 LEELLDR-PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE 186
Query: 500 QGG--VILVSHDERLIRETDCELWALEKKNIRKF 531
+GG +I+V+HD L+ E + L+ I
Sbjct: 187 EGGKTIIIVTHDLELVLEYADRVVVLDDGKILAD 220
|
Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-27
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
+ +++F Y G +L+ ++ L +AL G NG GK+T +L G + + G +
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAH 447
K R IG Q LF D E L+ L L E++ L L +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE 121
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVI 504
P LSGGQK R+A+A L+ D+LI DEPT+ LD ++++ + E I+ VI
Sbjct: 122 RHP-LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVI 180
Query: 505 LVSHDERLI 513
+++HD +
Sbjct: 181 VITHDYEFL 189
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-27
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 38/183 (20%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
+ +++ GY GG+ +L+ ++ ++ V ++GPNG GKST L L G L P+ GE+
Sbjct: 2 VENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI---- 56
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-------MFGLPSYAHTIP 450
D L +L ++ R++ + GL A P
Sbjct: 57 -----LLDGKD----------------LASLSPKELARKIAYVPQALELLGLAHLADR-P 94
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILV 506
+LSGG++ RV LA P IL+LDEPT++LDI E ++ L + V++V
Sbjct: 95 FNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV 154
Query: 507 SHD 509
HD
Sbjct: 155 LHD 157
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-26
Identities = 73/219 (33%), Positives = 98/219 (44%), Gaps = 32/219 (14%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
P P L V+ YPG + L V+F + RVALVGP+G GKST LNLL G + P +
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 391 GELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---EKSRRQ 436
G + S R +I QH LF T E + P + R
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHP--FLFAG-TIAENI--RLARPDASDAEIREA 431
Query: 437 LGMFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
L GL + +P LSGGQ R+ALA L + +L+LDEPT +LD
Sbjct: 432 LERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491
Query: 487 ESIDALAEAIKNYQGG--VILVSHDERLIRETDCELWAL 523
E+ + EA++ G V+LV+H L D + L
Sbjct: 492 ETEAEVLEALRALAQGRTVLLVTHRLALAALAD-RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 1e-25
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 46/191 (24%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
+ +++ Y L + ++ ++ L+GPNG GK+T + ++ G L P+ GE++
Sbjct: 3 VRNLSKRYGKKTAL-DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG 61
Query: 395 -------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH 447
+ + RIG + L+ + T E L
Sbjct: 62 KDIKKEPEEVKRRIGYLPEEPS--LYENLTVRENL------------------------- 94
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVI 504
LSGG K R+ALA+ L++P++LILDEPT+ LD ES E ++ ++
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 505 LVSHDERLIRE 515
L SH
Sbjct: 150 LSSHILEEAER 160
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-25
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 50/222 (22%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
PP + L +++F YP GK L +N + ALVG +G GKST LNLL G L P +G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 392 ELR-----------KSPRLRIGKFDQHSGEHLFP---------------DDTPCE----- 420
E+R ++ R +I Q+ +LF D+
Sbjct: 377 EIRVNGIDLRDLSPEAWRKQISWVSQNP--YLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
L++ P + +G G LSGGQ R+ALA L+ +L+LDEP
Sbjct: 435 GLLEFVPKP-DGLDTVIGEGG----------AGLSGGQAQRLALARALLSPASLLLLDEP 483
Query: 481 TNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRETDC 518
T +LD E+ + AL E K Q V++++H + D
Sbjct: 484 TAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAADADR 523
|
Length = 559 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 62/199 (31%), Positives = 97/199 (48%), Gaps = 23/199 (11%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
H+V+ YPGG L V+ + + L GP+G GK+T L LL G LTP++G++R
Sbjct: 4 FHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63
Query: 395 ----KSPRLRIGKFDQHSG-----EHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LG 438
+ ++ + G L PD T E + +++ + +R+ L
Sbjct: 64 EDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEA 495
GL A P + LSGG++ RVA+A +N+P +L+ DEPT NLD E I L +
Sbjct: 124 QVGLEHKADAFPEQ-LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182
Query: 496 IKNYQGGVILVSHDERLIR 514
+ VI+ +HD L+
Sbjct: 183 LNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-25
Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 34/208 (16%)
Query: 340 DVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+++ Y GG L+ V+ ++ VA+VGP+G GKST LN+L G P GE+R
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVD 64
Query: 395 ----------KSPRLR---IGK-FDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKS 433
+ R IG F +L PD T P E++
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSF---NLLPDLTALENVELPLLLAGVPKKERRERA 121
Query: 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----I 489
L GL + P +LSGGQ+ RVA+A N+P I++ DEPT NLD E+ +
Sbjct: 122 EELLERVGLGDRLNHYP-SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 490 DALAEAIKNYQGGVILVSHDERLIRETD 517
+ L E K +++V+HD L D
Sbjct: 181 ELLRELNKEAGTTIVVVTHDPELAEYAD 208
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 60/203 (29%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+L + +++FGY GGK +L+ ++F + ++GPNG GKST L L G L P GE+
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 394 --------RKSPR---LRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLPYEKSR 434
SP+ ++ Q P L + LF P ++
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQ---SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE 116
Query: 435 RQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---- 486
L + GL A P+ +LSGG++ RV +A IL+LDEPT++LDI
Sbjct: 117 EIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 487 ESIDALAEAIKNYQGGVILVSHD 509
E ++ L + + V++V HD
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHD 198
|
Length = 258 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+V+ YPGG+ L V+F + V L GP+G GKST L L+ GE P +G++
Sbjct: 6 NVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHD 65
Query: 395 --KSPRLRIGKFDQHSG-----EHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMF 440
+ I + G L PD T E +++ P + RR+ L +
Sbjct: 66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLV 125
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--- 497
GL A +P LSGG++ RVA+A +N P +L+ DEPT NLD L+ I
Sbjct: 126 GLKHKARALPS-QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLD----PDLSWEIMRLF 180
Query: 498 ---NYQG-GVILVSHDERLIR 514
N G V++ +HD L+
Sbjct: 181 EEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-24
Identities = 68/236 (28%), Positives = 105/236 (44%), Gaps = 40/236 (16%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P+P + +V+F YPG K +L+ ++F ++ +VA+VGP+G GKST + LL
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 386 LTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY---- 430
P GE+ S R RIG Q LF + + N+
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP--LLFSGT-----IRE--NIALGRPD 429
Query: 431 ------EKSRRQLGMFG----LPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILIL 477
E++ + LP TI LSGGQ+ R+A+A L NP ILIL
Sbjct: 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL 489
Query: 478 DEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETDCELWALEKKNIRKF 531
DE T+ LD E+ + +A+K G ++++H I+ D + L+ I +
Sbjct: 490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNAD-RIIVLDNGRIVER 544
|
Length = 567 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 68/213 (31%), Positives = 97/213 (45%), Gaps = 33/213 (15%)
Query: 335 VLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ L +V+ Y G L+ VN ++ VA+VGP+G GKST LNLL G P G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 392 ELR------------KSPRLR---IGK-FDQHSGEHLFPDDT-------PCEYLMKLFNL 428
E+ + +LR IG F +L PD T P K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNF---NLLPDLTVLENVELPLLIAGKSAGR 117
Query: 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+ L + GL +LSGGQ+ RVA+A +NNP I++ DEPT NLD ++
Sbjct: 118 RKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 489 ----IDALAEAIKNYQGGVILVSHDERLIRETD 517
++ L E K +I+V+HD L + D
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210
|
Length = 226 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 8e-24
Identities = 64/208 (30%), Positives = 94/208 (45%), Gaps = 23/208 (11%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--- 396
+VT YP G L+ +N + V LVGP+G GKST L L+ E P G +R +
Sbjct: 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 397 ----PRLRIGKFDQHSG-----EHLFPDDTPCEYLMKLFNLPYEKSRR-------QLGMF 440
I + G L PD E + + R L +
Sbjct: 65 VSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV 124
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 498
GL +P +LSGG++ RVA+A +N+P ILI DEPT NLD ++ + +K N
Sbjct: 125 GLSHKHRALP-AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 499 YQGGVILVS-HDERLIRETDCELWALEK 525
G ++V+ H + L+ T + ALE+
Sbjct: 184 KAGTTVVVATHAKELVDTTRHRVIALER 211
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-24
Identities = 65/232 (28%), Positives = 100/232 (43%), Gaps = 29/232 (12%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY-PGGKVLLEKVNFGLDMESRVALVG 369
++L+ P E + P L + +V+F Y P +LE ++ + +VA+VG
Sbjct: 448 DILDTPPEQEGDKTLIHLPKLQGEIE-FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVG 506
Query: 370 PNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTP 418
+G GKST L LL G P +G + S R ++G Q LF
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP--FLFSGSIR 564
Query: 419 CEYLMKLFNLPYEKSRRQLGMFG-------LPSYAHTIPIRD----LSGGQKARVALAEL 467
+ E+ + G LP T P+ + LSGGQ+ R+ALA
Sbjct: 565 ENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT-PVGEGGANLSGGQRQRLALARA 623
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
L+ P IL+LDE T+ LD E+ + + + G VI+++H IR D
Sbjct: 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSAD 675
|
Length = 709 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 2e-23
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+L + V+ + G +VL E +N ++ VA++GP+G GKST L L+ G P GE
Sbjct: 1 MALLEIEGVSKSFGGVEVL-EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 393 LR------KSPRLRIG-KFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQLG 438
+ P IG F + + L P T E K E+++ L
Sbjct: 60 VLLDGRPVTGPGPDIGYVFQEDA---LLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
+ GL + P LSGG + RVA+A P +L+LDEP LD E D L
Sbjct: 117 LVGLAGFEDKYP-HQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175
Query: 495 AIKNYQGGVILVSHD 509
+ + V+LV+HD
Sbjct: 176 LWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 5e-23
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 336 LGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L + +V+F YPG + +L V+F ++ +A++GP+G GKST L+ G L P G +R
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 395 ----KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQLGMFGLPSYAH 447
+ + H G YL +LF +
Sbjct: 61 LDGADISQWDPNELGDHVG-----------YLPQDDELF-------------------SG 90
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 504
+I LSGGQ+ R+ LA NP IL+LDEP ++LD+E AL +AI + I
Sbjct: 91 SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI 150
Query: 505 LVSHDERLIRETD 517
+++H + D
Sbjct: 151 VIAHRPETLASAD 163
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 39/219 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P+L + ++ + GG + V+ + V L+GPNG GK+T NL+ G P+ G
Sbjct: 1 TTPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59
Query: 392 EL--------RKSPRLR----IGKFDQHSGEHLFPDDTPCEYLM----------KLFNLP 429
+ P I + Q + LFP T E + L P
Sbjct: 60 TVIFRGRDITGLPPHRIARLGIARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRP 117
Query: 430 ---------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
E++R L GL A P +LS GQ+ R+ +A P +L+LDEP
Sbjct: 118 RARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRRLEIARALATQPKLLLLDEP 176
Query: 481 TNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIRE 515
L+ E + LAE I+ +GG ++L+ HD +L+
Sbjct: 177 AAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
|
Length = 250 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 9e-23
Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 32/199 (16%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG------ 391
L +T + GG+ +L+ V+ + +A++GP+G GKST L L+ G L P+ G
Sbjct: 3 LRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61
Query: 392 ---------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKLFNLPYEKSRRQ-- 436
EL + R R+G Q LF T E L + L E+ R
Sbjct: 62 EDISGLSEAELYRL-RRRMGMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L GL P +LSGG K RVALA +P++L+ DEPT LD + + +
Sbjct: 119 EKLEAVGLRGAEDLYP-AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDD 177
Query: 495 AIKNYQG----GVILVSHD 509
I++ + I+V+HD
Sbjct: 178 LIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 70/207 (33%), Positives = 96/207 (46%), Gaps = 39/207 (18%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P L L D++ GYPG +L+ V+ L RVA++GP+G GKST L L G L P +GE+
Sbjct: 333 PTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 394 -----------RKSPRLRIGKFDQHSGEHLF------------PDDTPCEYLMKLFNLPY 430
+ R R+ Q + HLF PD T E L
Sbjct: 393 TLDGVPVSSLDQDEVRRRVSVCAQDA--HLFDTTVRENLRLARPDATDEELWAAL----- 445
Query: 431 EKSRRQLGMF--GLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
R L + LP T+ LSGG++ R+ALA L + IL+LDEPT +LD
Sbjct: 446 --ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLD 503
Query: 486 IESIDALAEAIKNYQGG--VILVSHDE 510
E+ D L E + G V+L++H
Sbjct: 504 AETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 1e-22
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 34/182 (18%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L +V+ Y VL + V+ ++ VAL+GP+G GKST L + G P+ G +
Sbjct: 3 LKNVSKRYGQKTVLND-VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61
Query: 395 ---KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
+ + G + + F L + + GL
Sbjct: 62 EDLTDLEDELPPLRRRIG-----------MVFQDFALFPHLTVLENIALGL--------- 101
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---SIDALAEAIKNYQG-GVILVS 507
SGGQ+ RVALA +PD+L+LDEPT+ LD + AL ++++ G V+LV+
Sbjct: 102 ---SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVT 158
Query: 508 HD 509
HD
Sbjct: 159 HD 160
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 64/202 (31%), Positives = 89/202 (44%), Gaps = 37/202 (18%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP- 397
GG V L+ V+F + L+GPNG GK+T NL+ G L P G + P
Sbjct: 11 GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH 70
Query: 398 ---RLRIG-KFDQHSGEHLFPDDTPCEYLM---------KLFNLPYEKSRRQ-------- 436
RL IG F Q LFP+ T E +M L + R+
Sbjct: 71 EIARLGIGRTF-QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEEL 127
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L GL A P +LS GQ+ R+ +A +P +L+LDEP L+ E + LAE I
Sbjct: 128 LERVGLADLADR-PAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
Query: 497 K--NYQG-GVILVSHDERLIRE 515
+ +G V+LV HD ++
Sbjct: 187 RELRERGITVLLVEHDMDVVMS 208
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 2e-22
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 26/193 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L ++ Y G L+ ++ ++ +AL+GP+G GK+T L L+ G P+ GE+
Sbjct: 3 LKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61
Query: 395 -----KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMF 440
P R IG F ++ LFP T E + +KL +P + R + L +
Sbjct: 62 RDVTGVPPERRNIGMVFQDYA---LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV 118
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL + P +LSGGQ+ RVALA P +L+LDEP + LD + + L E +K Q
Sbjct: 119 GLEGLLNRYP-HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQ 177
Query: 501 GG----VILVSHD 509
I V+HD
Sbjct: 178 RELGITTIYVTHD 190
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-22
Identities = 63/191 (32%), Positives = 85/191 (44%), Gaps = 23/191 (12%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------R 394
YPGG +L+ +NF + +AL+G NG GKST L L G L P G + R
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 395 KS---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGLPSY 445
K R R+G Q + LF D + NL E RR L G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-G 502
P LSGG+K RVA+A PD+L+LDEPT LD + + ++ +G
Sbjct: 121 RER-PTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 503 VILVSHDERLI 513
V++ +HD L
Sbjct: 180 VVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 345 YPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------- 393
Y G ++ ++ + L+G NG GK+T L +L GEL P G
Sbjct: 10 YKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSY 445
RK+ R +G Q LF + T E+L + + + L + GL
Sbjct: 70 RKAARQSLGYCPQFDA--LFDELTVREHLR-FYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--V 503
A+ R LSGG K +++LA + P +L+LDEPT+ LD S A+ + I + G +
Sbjct: 127 ANK-RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSI 185
Query: 504 ILVSHD 509
IL +H
Sbjct: 186 ILTTHS 191
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 5e-22
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 29/197 (14%)
Query: 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
L + +V+ Y GG LE ++ ++ VALVGP+G GKST L ++ G P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 393 LR------KSPRLRIG-KFDQHSGEHLFP-----DDTPCEYLMKLFNLPYEKSRRQ---- 436
+ P G F Q + L P D+ ++L +P ++R +
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDA---LLPWLTVLDN--VALGLELQGVPKAEARERAEEL 115
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESI-DAL 492
L + GL + + P LSGG + RVALA +PD+L+LDEP + LD E + + L
Sbjct: 116 LELVGLSGFENAYP-HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 493 AEAIKNYQGGVILVSHD 509
+ + V+LV+HD
Sbjct: 175 LDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 5e-22
Identities = 68/236 (28%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P P++ + VT + G +V+L+ V+ + +A++G +G GKST L L+ G L P+KG
Sbjct: 5 PEPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63
Query: 392 ELR--------------KSPRLRIGKFDQHSGEHLFPDDTPCE----YLMKLFNLPYEKS 433
E+ R R+G Q LF T E L + LP
Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGA--LFSSLTVFENVAFPLREHTKLPESLI 121
Query: 434 RRQ----LGMFGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
R L + GL + A P +LSGG + RVALA +P++L LDEPT+ LD S
Sbjct: 122 RELVLMKLELVGLRGAAADLYP-SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 489 IDALAEAIKNYQ----GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+ E I+ VI+V+HD + + L + G ++
Sbjct: 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV-IAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 8e-22
Identities = 75/246 (30%), Positives = 118/246 (47%), Gaps = 50/246 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF-- 404
G K L E ++ +R L+G NG GKSTF+ +L G+L P+ G + P R+GK
Sbjct: 12 GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ 71
Query: 405 DQHSGE-------------------------HLFPDDTPCEYLMKLFNLPYE-------- 431
DQ + E + P+ + + MK+ +L +
Sbjct: 72 DQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-MKVADLEVKFAEMDGYT 130
Query: 432 -KSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
++R LG+ G+P H + +++ G K RV LA+ +NPDIL+LDEPTNNLDI
Sbjct: 131 AEARAGELLLGV-GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDIN 189
Query: 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWA-LEKKNIRKFNGDFDDY-------R 539
+I L + + +I++SHD R + C A L+ +R + G++D+Y R
Sbjct: 190 TIRWLEDVLNERNSTMIIISHD-RHFLNSVCTHMADLDYGELRVYPGNYDEYMTAATQAR 248
Query: 540 EKLLTS 545
E+LL
Sbjct: 249 ERLLAD 254
|
Length = 530 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 9e-22
Identities = 63/184 (34%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
GG+VL ++F L + L GPNG GK+T L L+ G L P G +++ D
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG------TIKLDGGDI 66
Query: 407 HSGEHLFPDDTPCEYL-----MKLF-----NLPYEKSRRQLG-----------MFGLPSY 445
+ C YL MK NL E LG GL
Sbjct: 67 DDPDVA----EACHYLGHRNAMKPALTVAENL--EFWAAFLGGEELDIAAALEAVGLAPL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGV 503
AH +P LS GQK RVALA L ++N I ILDEPT LD ++ AE I+ + QGG+
Sbjct: 121 AH-LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 504 ILVS 507
++ +
Sbjct: 180 VIAA 183
|
Length = 207 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-22
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 21/187 (11%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G ++L E ++F L+ + + GPNGIGK+T L +L G L P+ GE+R + + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGT-ALAEQRD 69
Query: 407 HSGEHLF---------PDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIR 452
++ P+ + E L F ++ L GL + +P
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLH--FWAAIHGGAQRTIEDALAAVGLTGFED-LPAA 126
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHD 509
LS GQ+ R+ALA L L+ + ILDEPT LD + LA ++ + G V+L +H
Sbjct: 127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186
Query: 510 ERLIRET 516
+ + E
Sbjct: 187 DLGLVEA 193
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-21
Identities = 59/206 (28%), Positives = 92/206 (44%), Gaps = 26/206 (12%)
Query: 334 PVLGLHDVTFGYPGGKV---LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L + +++ Y GGK L V+ ++ + +VG +G GKST LL G P+
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 391 GELR----KSPRLRIGKFD--------QHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQ- 436
G + + K Q L P T L + L KS+++
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 437 ---LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ES 488
L GLP S+ P +LSGGQ+ R+A+A + P +LILDEPT+ LD+ +
Sbjct: 122 AELLDQVGLPPSFLDRRP-HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180
Query: 489 IDALAEAIKNYQGGVILVSHDERLIR 514
++ L E K + +SHD L+
Sbjct: 181 LNLLLELKKERGLTYLFISHDLALVE 206
|
Length = 252 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 8e-21
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 36/215 (16%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
++ + +++ YPGG L+ VN ++ VA++GP+G GKST L L G + P GE+
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 394 --------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNL 428
+ R IG Q L P + E ++ LF L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
++ + Q L G+ A+ LSGGQ+ RVA+A + P I++ DEP +L
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 485 DIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
D ES +D L + + VI+ H L ++
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAKK 213
|
Length = 258 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 9e-21
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 20/123 (16%)
Query: 376 STFLNLLKGELTPNKGEL------------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
ST L L+ G L P G + RK R RIG Q LFP+ T E L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDP--QLFPELTVRENLF 58
Query: 424 KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
F L +++ + L GLP + P+ LSGGQK RVA+A L P +L+LDE
Sbjct: 59 --FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDE 116
Query: 480 PTN 482
PT
Sbjct: 117 PTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-20
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 61/189 (32%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI------P 113
I++EN S + G L + +L I G R GLVG NG GK+TLL+ IA
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 114 SSIDLLYCEQEVEASDDSAVNIVLS-ADKNRVKLLKECSKLERDESGDNQLRLTEVYDE- 171
S++ + Y EQ LS +K R+ L K N L L DE
Sbjct: 61 STVKIGYFEQ-------------LSGGEKMRLALAKLLL------ENPNLLLL----DEP 97
Query: 172 -----LKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNN 226
L+SIEA + E ++ + T+++VSHD+ FL+
Sbjct: 98 TNHLDLESIEA-------------------------LEEALKEYPGTVILVSHDRYFLDQ 132
Query: 227 ICTDIIHLD 235
+ T II L+
Sbjct: 133 VATKIIELE 141
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-20
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGK 403
G + L ++F L+ + + GPNG GK+T L +L G L P+ GE+ + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES 72
Query: 404 FDQHS---GEH--LFPDDTPCEYL--MKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDL 454
+ Q G + + T E L + F+ L GL +P+ L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQL 131
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDER 511
S GQ+ RVALA L L+ + ILDEP LD E + L + G V+L +H
Sbjct: 132 SAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPL 191
|
Length = 209 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-20
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 25/179 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP 397
G K +L+ ++ + +GPNG GK+T + ++ G + P+ GE+
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEA 70
Query: 398 RLRIGK-------FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
RIG + + L +L + ++ L + GL A
Sbjct: 71 LRRIGALIEAPGFYPNLTARENL------RLLARLLGIRKKRIDEVLDVVGLKDSAKK-K 123
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
++ S G K R+ +A L NPD+LILDEPTN LD + I L E I + QG +L+S
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLIS 182
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-20
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G+ L ++F L + + GPNG GK+T L +L G P G + + + D
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 407 HSGEHLFPDDTPC--EYLMKLFNLPY-------EKSRRQLGMFGLPSYAHTIPIRDLSGG 457
+ L+ P L L NL + E+ L GL + P+ LS G
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAG 129
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSH-----D 509
Q+ RVALA L L+ + ILDEPT LD + AEA+ + +GG V+L +H
Sbjct: 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
Query: 510 ERLIRETD 517
E RE D
Sbjct: 190 EAGARELD 197
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-20
Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 42/227 (18%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------RKSPR 398
LL+ ++ RV LVG NG GKST + +L GE+ + G + + PR
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77
Query: 399 LRIGK-FD------QHSGEHLF------------PDDTPCEYLMKL------FNLPYEKS 433
G +D + E+L P + L KL NL ++
Sbjct: 78 NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLEN 137
Query: 434 RRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
R L GL + LSGG + AL ++NPD+L+LDEPTN+LDIE+I+
Sbjct: 138 RINEVLAQLGLD--PDA-ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEW 194
Query: 492 LAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538
L +K +QG +I +SHD IR + L++ + + G++D Y
Sbjct: 195 LEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
|
Length = 635 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-20
Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 31/223 (13%)
Query: 322 KFRFPNPPYLPPP-VLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ FP+ L L +V+F YPG + L+ N L +VA++G +G GKST L
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 380 NLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
LL G P +G + ++ R I Q HLF T + L +L N
Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV--HLF-SGTLRDNL-RLANP 437
Query: 429 --PYEKSRRQLGMFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILI 476
E+ L GL + P R LSGG++ R+ALA L++ + +
Sbjct: 438 DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 477 LDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
LDEPT LD + + + + G +++V+H R + D
Sbjct: 498 LDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540
|
Length = 573 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 9e-20
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 24/170 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNKG--- 391
L L ++T Y + L L + + L+GPNG GK+T + +L P+ G
Sbjct: 1 LQLENLTKRYGKKRAL---DGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 392 ----ELRKSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----L 437
++ K P R RIG Q G ++P+ T E Y+ L +P ++ + + L
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ L A I LSGG + RV +A+ + +P ILI+DEPT LD E
Sbjct: 116 ELVNLGDRAKK-KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----- 391
+V+F YP ++ L+ V+ + +VA++G G GKST L LL G P G
Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64
Query: 392 ----------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG--- 438
+LR+ IG Q LF T + + P R L
Sbjct: 65 GTDIRQLDPADLRR----NIGYVPQDV--TLF-YGTLRDNIT--LGAPLADDERILRAAE 115
Query: 439 MFGLPSYAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+ G+ + + P R LSGGQ+ VALA LN+P IL+LDEPT+ +D+ S
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175
Query: 489 IDALAEAIKNYQGG--VILVSHDERLIRETD 517
+ L E ++ G +I+++H L+ D
Sbjct: 176 EERLKERLRQLLGDKTLIIITHRPSLLDLVD 206
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 58/193 (30%), Positives = 94/193 (48%), Gaps = 28/193 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----------KGELTPNKGEL 393
G K +L+ ++ ++ V ++GP+G GKST L N L GE +K ++
Sbjct: 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDI 72
Query: 394 RKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNLP----YEKSRRQLGMFGLPSY 445
K R ++G Q +LFP T +K+ L EK+ L GL
Sbjct: 73 LKL-RRKVGMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADK 129
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-G 502
A P + LSGGQ+ RVA+A +P +++ DEPT+ LD E + + + +K+ +G
Sbjct: 130 ADAYPAQ-LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMT 188
Query: 503 VILVSHDERLIRE 515
+I+V+H+ RE
Sbjct: 189 MIIVTHEMGFARE 201
|
Length = 240 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 3e-19
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 328 PPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387
P + PP+L H + F V ++F +D + + G NG GK+T L +L G L
Sbjct: 4 PLHTAPPLLAAHALAFSRNEEPVF-GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62
Query: 388 PNKGEL-------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---- 436
G++ + R R + H L D + E L L L ++++
Sbjct: 63 VESGQIQIDGKTATRGDRSRFMAYLGHLPG-LKADLSTLENLHFLCGLHGRRAKQMPGSA 121
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L + GL Y T+ +R LS GQK R+ALA L L+ + +LDEP NLD+E I + I
Sbjct: 122 LAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
Query: 497 KNY---QGGVILVSH 508
+ G ++ +H
Sbjct: 181 SAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-19
Identities = 60/182 (32%), Positives = 92/182 (50%), Gaps = 18/182 (9%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 400
V+FG + +L V+ L + L+GPNG GKST + ++ G + P++G ++++ +LR
Sbjct: 12 VSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLR 68
Query: 401 IGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLS 455
IG Q L+ D T ++L P K L H I P++ LS
Sbjct: 69 IGYVPQK----LYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQAGHLIDAPMQKLS 122
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHDER 511
GG+ RV LA LN P +L+LDEPT +D+ AL + I + V++VSHD
Sbjct: 123 GGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182
Query: 512 LI 513
L+
Sbjct: 183 LV 184
|
Length = 251 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 9e-19
Identities = 59/207 (28%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------ 393
+V F Y K +L+ +NF + VA+VGP G GK+T +NLL P KG++
Sbjct: 7 NVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGID 66
Query: 394 -----RKSPRLRIGKFDQHSGEHLFPD--------------DTPCEYLMKLFNLPYEKSR 434
RKS R IG Q + LF D K +
Sbjct: 67 IRDISRKSLRSMIGVVLQDT--FLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMK 124
Query: 435 RQLGMFGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
G Y + +LS G++ +A+A L +P ILILDE T+N+D E+ +
Sbjct: 125 LPNG------YDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 493 AEAIKNYQGG--VILVSHDERLIRETD 517
EA++ G I+++H I+ D
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNAD 205
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-18
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 49/233 (21%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVL-G---LHDVTFGYPG-GKVLLEKVNFGLDMESRV 365
EL++ P E R +L P L G +V+F YPG L+ V+ + +V
Sbjct: 440 ELMQLPVE-----RPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKV 494
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD--TPCEYLM 423
A++G G GKST L LL G P +G + + D + P D Y+
Sbjct: 495 AIIGRIGSGKSTLLKLLLGLYQPTEG------SVLLDGVDIR---QIDPADLRRNIGYVP 545
Query: 424 K---LF------NL----PY---EKSRRQLGMFGLPSYAHTIPI----------RDLSGG 457
+ LF N+ PY E+ R + G+ + P R LSGG
Sbjct: 546 QDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605
Query: 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSH 508
Q+ VALA L +P IL+LDEPT+ +D S + + +K + G ++LV+H
Sbjct: 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 52/222 (23%)
Query: 335 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG------- 384
+L + +++ +P G L+ V+F + + LVG +G GKST + G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 385 -------ELTPNKGELRKSPRLRIGKFDQHS----------GEHLFPDDTPCEYLMKLFN 427
+L LRK R I Q GE + E L
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI------AEPLRIHGK 114
Query: 428 LPYEKSRRQLGM-----FGLPS-----YAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
L +++R++ + GLP Y H +LSGGQ+ RVA+A NP +LI
Sbjct: 115 LSKKEARKEAVLLLLVGVGLPEEVLNRYPH-----ELSGGQRQRVAIARALALNPKLLIA 169
Query: 478 DEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
DEPT+ LD+ +D L + + ++ ++HD ++ +
Sbjct: 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 66/227 (29%), Positives = 93/227 (40%), Gaps = 76/227 (33%)
Query: 340 DVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR 398
+VTF YPG G +L ++ + VALVGP+G GKST +NL+ PR
Sbjct: 5 NVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI--------------PR 50
Query: 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----------------FG 441
+D SG L +Y L +L RRQ+G+ +G
Sbjct: 51 F----YDVDSGRILIDGHDVRDY--TLASL-----RRQIGLVSQDVFLFNDTVAENIAYG 99
Query: 442 LP-------------SYAHTI----------PIRD----LSGGQKARVALAELTLNNPDI 474
P + AH I + LSGGQ+ R+A+A L +P I
Sbjct: 100 RPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETD 517
LILDE T+ LD ES + A++ +++H RL I D
Sbjct: 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAH--RLSTIENAD 204
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 5e-18
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSP 397
D+ + Y G K L +NF SR+A++GPNG GKST G L P G +R P
Sbjct: 8 DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP 67
Query: 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS------RRQLGMFGL 442
R +G Q+ + +F + NL ++ L M GL
Sbjct: 68 ITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL 127
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KN 498
+P LSGG+K RVA+A + P +L+LDEPT LD + + L + + +
Sbjct: 128 EELRDRVP-HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET 186
Query: 499 YQGGVILVSHDERLIRETDCELWALEKKNI 528
Y VI +H L+ E ++ ++K I
Sbjct: 187 YGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216
|
Length = 277 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 7e-18
Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 36/209 (17%)
Query: 335 VLGLHDV--TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
++ +H + T G G++ +L+ V + VA+VGP+G GKST L +L G P+ G
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG 65
Query: 392 ELR------------KSPRLRIGKFDQHSGE-----HLFPDDT-------PCEYLMKLFN 427
E+R LR +H G HL P+ T P E +
Sbjct: 66 EVRLLGQPLHKLDEDARAALR----ARHVGFVFQSFHLIPNLTALENVALPLELRGESSA 121
Query: 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
++ L GL P LSGG++ RVALA PD+L DEPT NLD
Sbjct: 122 DSRAGAKALLEAVGLGKRLTHYP-AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 488 SIDALAEAI--KNYQGG--VILVSHDERL 512
+ D +A+ + N + G ++LV+HD +L
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 55/216 (25%), Positives = 81/216 (37%), Gaps = 63/216 (29%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L D+ Y G K L+ ++ + AL+GP+G GKST L LL G
Sbjct: 3 LRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA----- 56
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-FGLP-----------SY 445
GE L + + + L RR++GM F P +Y
Sbjct: 57 --------PDEGEVLLDGKDIYDLDVDVLEL-----RRRVGMVFQKPNPFPGSIYDNVAY 103
Query: 446 A---HTI---------------------------PIRDLSGGQKARVALAELTLNNPDIL 475
H I LSGGQ+ R+ LA N P++L
Sbjct: 104 GLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163
Query: 476 ILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHD 509
+LDEPT+ LD S + E I + +++V+H+
Sbjct: 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 57/183 (31%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRL- 399
L+ ++F ++ V +GPNG GK+T L +L G L P GE+R + +
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFL 93
Query: 400 -RIGK-FDQHSGEHLFPDDTPCE--YLMK-LFNLPYEKSRRQLG----MFGLPSYAHTIP 450
RIG F Q + L+ D + YL+ +++LP + +++L + L T P
Sbjct: 94 RRIGVVFGQKT--QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT-P 150
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 506
+R LS GQ+ R +A L+ P+IL LDEPT LD+ + + + +K Y V+L
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210
Query: 507 SHD 509
SH
Sbjct: 211 SHY 213
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 2e-17
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 29/194 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELR------KSP 397
G +L+ ++ + V ++GP+G GKST L NLL+ P+ G +
Sbjct: 11 GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE---EPDSGTIIIDGLKLTDD 67
Query: 398 RLRIGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPS 444
+ I + Q G +LFP T E + K+ + E++ L GL
Sbjct: 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD 127
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG- 502
A P LSGGQ+ RVA+A NP +++ DEPT+ LD E + + + +K+ + G
Sbjct: 128 KADAYP-AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM 186
Query: 503 -VILVSHDERLIRE 515
+++V+H+ RE
Sbjct: 187 TMVVVTHEMGFARE 200
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 4e-17
Identities = 62/202 (30%), Positives = 82/202 (40%), Gaps = 53/202 (26%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSP 397
GG+ LL+ V+ L VA++GPNG GKST L L GEL+P+ GE+R
Sbjct: 13 GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPA 72
Query: 398 RL--RIGKFDQHSGEHL-FPDDTPCEYLMKLFN---------LPYEKSRRQ--------L 437
L R QHS L FP F P+ SR + L
Sbjct: 73 ELARRRAVLPQHS--SLSFP-----------FTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPD--ILILDEPTNNLDI----E 487
L A LSGG++ RV LA+L + L+LDEPT+ LD+
Sbjct: 120 AQVDLAHLAGR-DYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 488 SIDALAEAIKNYQGGVILVSHD 509
+ + VI+V HD
Sbjct: 179 VLRLARQLAHERGLAVIVVLHD 200
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-17
Identities = 56/183 (30%), Positives = 80/183 (43%), Gaps = 39/183 (21%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ L +++ P G+VLL+ ++F + R+ + GP+G GKS+ L L P
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRAL-AGLWP------- 52
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYL-----MKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
G+ GE L +L + L L R QL Y P
Sbjct: 53 ---WGSGRIGMPEGEDLL-------FLPQRPYLPLGTL-----REQL------IY----P 87
Query: 451 IRD-LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
D LSGG++ R+A A L L+ P + LDE T+ LD ES D L + +K VI V H
Sbjct: 88 WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147
Query: 510 ERL 512
L
Sbjct: 148 PSL 150
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-17
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 27/200 (13%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P P L + +V+ + G ++ ++ + V L+GP+G GK+T L ++ G P+ G
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 392 ELR--------KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
E+ P R IG F ++ LFP T E + +K+ + +
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYA---LFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 437 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L + GL +A P LSGGQ+ RVALA + P +L+LDEP + LD + + +
Sbjct: 118 EEALELVGLEGFADRKP-HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMR 176
Query: 494 EAIKNYQG----GVILVSHD 509
+ +K Q + V+HD
Sbjct: 177 KELKELQRELGITFVYVTHD 196
|
Length = 352 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 5e-17
Identities = 68/205 (33%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRL 399
G G L+ V+F + R+ L+G NG GKST L LL G P+ G + R S L
Sbjct: 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL 89
Query: 400 RIGKFDQHSGEHLFPDDTPCE--YLMKLFNLPYEKSRRQLG-------MF-GLPSYAHTI 449
+G G + P+ T E YL SR+++ F L +
Sbjct: 90 GLG-----GGFN--PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSELGDFIDL- 138
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVIL 505
P++ S G KAR+A A T PDIL++DE D L E +K VIL
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVIL 197
Query: 506 VSHDERLIRET-DCELWALEKKNIR 529
VSHD I+ D L LEK IR
Sbjct: 198 VSHDPSSIKRLCDRALV-LEKGKIR 221
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 5e-17
Identities = 62/225 (27%), Positives = 88/225 (39%), Gaps = 73/225 (32%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
+VTF Y G+ +L+ V+F + +VA+VGP+G GKST L LL + G +
Sbjct: 5 NVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQD 64
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--------------------- 427
S R IG + P DT LFN
Sbjct: 65 IREVTLDSLRRAIG---------VVPQDTV------LFNDTIGYNIRYGRPDATDEEVIE 109
Query: 428 -------------LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474
P + +G GL LSGG+K RVA+A L NP I
Sbjct: 110 AAKAAQIHDKIMRFP-DGYDTIVGERGL----------KLSGGEKQRVAIARAILKNPPI 158
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
L+LDE T+ LD + + A+++ G I+++H I D
Sbjct: 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNAD 203
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 5e-17
Identities = 53/174 (30%), Positives = 74/174 (42%), Gaps = 37/174 (21%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELR--------K 395
GK LL+ V+ A++GP+G GKST LN L G T GE+ +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR 78
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLS 455
S R IG Q + L P T E LM +R LS
Sbjct: 79 SFRKIIGYVPQD--DILHPTLTVRETLM-----------------------FAAKLRGLS 113
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
GG++ RV++A ++NP +L LDEPT+ LD S + ++ G I+ S
Sbjct: 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICS 167
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 6e-17
Identities = 65/229 (28%), Positives = 96/229 (41%), Gaps = 59/229 (25%)
Query: 331 LPPP--VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387
LP P L + +T PG K +L+ ++F L + ++GP+G GKST LL G
Sbjct: 328 LPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP 387
Query: 388 PNKGELRKSPRLRIGKFDQHS----GEH---------LFP-----------DDTPCEYLM 423
P G S RL Q G H LF ++ E ++
Sbjct: 388 PTSG----SVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 424 K----------LFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471
+ + LP Y+ +G G LSGGQ+ R+ALA +
Sbjct: 444 EAARLAGVHELILRLPQGYDTR---IGEGGAT----------LSGGQRQRIALARALYGD 490
Query: 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVSHDERLIRETD 517
P +++LDEP +NLD E ALA AI +GG V++++H + D
Sbjct: 491 PFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539
|
Length = 580 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 6e-17
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 35/204 (17%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P L + +T +PG V + V+ + AL+G NG GKST + +L G P+ GE
Sbjct: 2 EPALEMRGITKRFPG-VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 393 LR--------KSP----RLRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSR 434
+R KSP RL IG QH L P T E ++ K + ++R
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGIGMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 435 -------RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+ G+ + A + DLS G++ RV + + +LILDEPT L +
Sbjct: 119 ARIKELSERYGLP-VDPDAK---VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 488 SIDALAEAIKNY--QG-GVILVSH 508
D L E ++ +G +I ++H
Sbjct: 175 EADELFEILRRLAAEGKTIIFITH 198
|
Length = 501 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 7e-17
Identities = 57/182 (31%), Positives = 89/182 (48%), Gaps = 40/182 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
GGK +L+ VN + AL+GPNG GKST + G P+ + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-----------PKYEVTE--- 56
Query: 407 HSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIP-------IRDL---- 454
GE LF + + +L P E++R LG+F Y IP +R +
Sbjct: 57 --GEILFKGED-------ITDLPPEERAR--LGIFLAFQYPPEIPGVKNADFLRYVNEGF 105
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHDER 511
SGG+K R + +L L PD+ ILDEP + LDI+++ +AE I + V++++H +R
Sbjct: 106 SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR 165
Query: 512 LI 513
L+
Sbjct: 166 LL 167
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 8e-17
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-------LRKSPRLRIGKF 404
L+ V+ + VA+VG +G GKST L+LL G P GE L K K
Sbjct: 21 LKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80
Query: 405 -DQHSG-----EHLFPDDTPCEYLMKLFNLPY-----------EKSRRQLGMFGLPSYAH 447
++ G HL PD T E + +P E++ L GL H
Sbjct: 81 RNKKLGFIYQFHHLLPDFTALENVA----MPLLIGKKSVKEAKERAYEMLEKVGL---EH 133
Query: 448 TIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQG 501
I R +LSGG++ RVA+A +N P +++ DEPT NLD + + + + +
Sbjct: 134 RINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
Query: 502 GVILVSHDERLIRETD 517
++V+HD L ++ D
Sbjct: 194 SFLVVTHDLELAKKLD 209
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
+ LSGG++ RVAL L L+ PD+L+LDEPTN+LD ES+ L + ++ Y G V+ V+HD
Sbjct: 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHD 217
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-16
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
+ LSGG++ RVAL L L PD+L+LDEPTN+LD ES+ L + + +Y G V+ V+HD
Sbjct: 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHD 219
|
Length = 556 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 1e-16
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 24/181 (13%)
Query: 347 GGKVLLEKVNFGL---DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIG 402
++L ++F L ++ V + GPNG GK++ L +L G P+ GE+ + +R
Sbjct: 12 DERILFSGLSFTLNAGEL---VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ 68
Query: 403 KFDQHSGEHLF--------PDDTPCE---YLMKLFNLPYEKSRRQ-LGMFGLPSYAHTIP 450
+ + H + L+ + T E + +L +++ + L GL + +P
Sbjct: 69 RDEYHQ-DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VP 126
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGG-VILVS 507
+R LS GQ+ RVALA L L + ILDEP +D + + L + + QGG VIL +
Sbjct: 127 VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186
Query: 508 H 508
H
Sbjct: 187 H 187
|
Length = 204 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-16
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 40/221 (18%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------KGELTPNKGELR----K 395
P GK L +NF L R+ALVGP+G GK++ LN L +G L N ELR +
Sbjct: 360 PDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPE 419
Query: 396 SPRLRIGKFDQHSGEHLF------------PDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
S R + Q+ L PD + E L + + L GL
Sbjct: 420 SWRKHLSWVGQNP--QLPHGTLRDNVLLGNPDASD-EQLQQALENAWVSEFLPLLPQGLD 476
Query: 444 SYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
+ PI D LS GQ R+ALA L +L+LDEPT +LD S + +A+
Sbjct: 477 T-----PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 500 QGG--VILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDD 537
++V+H +L ++W ++ I + GD+ +
Sbjct: 532 SRRQTTLMVTH--QLEDLAQWDQIWVMQDGQIVQ-QGDYAE 569
|
Length = 588 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 45/223 (20%)
Query: 334 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN- 389
P+L + + V F GG+V + V+F ++ + +VG +G GKST L G L
Sbjct: 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63
Query: 390 ------------------KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE 431
+ E+RK RI Q L P T + + + L +
Sbjct: 64 RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK 123
Query: 432 KSRRQ--------LGMFGLP------SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
SR + L GLP Y H LSGG + RV +A P +LI
Sbjct: 124 GSRAEARKRAVELLEQVGLPDPERRDRYPH-----QLSGGMRQRVMIAMALALKPKLLIA 178
Query: 478 DEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 516
DEPT LD + +D L + + V+ ++HD ++ E
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
|
Length = 539 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-16
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIG 402
G+ LL+ V+ L +A++GPNG GKST L L GEL+P+ GE+
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 403 KFDQHSGEHLFPDDTPCEY------LMKLFNLPYEKSRRQ----------LGMFGLPSYA 446
+ +H + P ++ + ++++ +P+ R L L A
Sbjct: 72 ELARHRA--VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 447 HTIPIRDLSGGQKARVALAEL------TLNNPDILILDEPTNNLDI---ESIDALAEAIK 497
R LSGG++ RV LA + + + L LDEPT+ LDI LA +
Sbjct: 130 -GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 498 NYQGGVILVSHD 509
G V+ V HD
Sbjct: 189 REGGAVLAVLHD 200
|
Length = 259 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 1e-16
Identities = 55/188 (29%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH---SGEHL------FPDD 416
+VG NG GK+T + LK LT P + G D GE F +
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTG-----ELPPNSKGGAHDPKLIREGEVRAQVKLAFENA 80
Query: 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH--------TIPIRDLSGGQKA------RV 462
+Y R L + + H SGG+K R+
Sbjct: 81 NGKKY----------TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRL 130
Query: 463 ALAELTLNNPDILILDEPTNNLDIESID-ALAEAIKNYQGG----VILVSHDERLIRETD 517
ALAE +N IL LDEPT NLD E+I+ +LAE I+ + +I+++HDE L+ D
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190
Query: 518 CELWALEK 525
++ +EK
Sbjct: 191 -HIYRVEK 197
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-16
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 48/188 (25%)
Query: 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
L +++V+F YP + +L+ ++ L ++AL+G +G GKST L LL G+L P +GE
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 393 --------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 444
L K+ I +Q +LF D T R LG
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRP--YLF-DTT---------------LRNNLG------ 96
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQ 500
R SGG++ R+ALA + L + I++LDEPT LD + + + E +K+
Sbjct: 97 -------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149
Query: 501 GGVILVSH 508
+I ++H
Sbjct: 150 --LIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 1e-16
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 29/189 (15%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--------------- 391
GGK + + + ++G +G GKST + +L + P G
Sbjct: 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV 63
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLP----YEKSRRQLGMFGLPS 444
ELR+ R +IG Q LFP T +L P EK+ L + GL
Sbjct: 64 ELREVRRKKIGMVFQQFA--LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEE 121
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQ 500
Y H P +LSGG + RV LA PDIL++DE + LD D++ + +K Q
Sbjct: 122 YEHRYP-DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 501 GGVILVSHD 509
++ ++HD
Sbjct: 181 KTIVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 27/196 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
+VT Y GGK + +N + + L+GP+G GK+T + ++ + P GE+
Sbjct: 3 FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62
Query: 395 -----KSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGM 439
+ P R +IG Q G LFP T E + KL P EK R + L +
Sbjct: 63 EDIREQDPVELRRKIGYVIQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLAL 120
Query: 440 FGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL +A P +LSGGQ+ RV +A +P +L++DEP LD + D L E K
Sbjct: 121 VGLDPAEFADRYP-HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179
Query: 498 NYQ----GGVILVSHD 509
Q ++ V+HD
Sbjct: 180 RLQQELGKTIVFVTHD 195
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 28/206 (13%)
Query: 334 PVLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L ++ Y G V L V+F + +A+VG +G GKST L+LL G TP
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 391 GEL--------RKSPRLRIGKFDQHSG-----EHLFPDDTPCEYL-MKLF------NLPY 430
G++ + S + +Q G HL PD T E + M L
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN 123
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++ L GL A+ P +LSGG++ RVA+A +NNP +++ DEPT NLD + D
Sbjct: 124 SRALEMLAAVGLEHRANHRP-SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNAD 182
Query: 491 ALAEAIK--NYQGGV--ILVSHDERL 512
++ + + N G ++V+HD +L
Sbjct: 183 SIFQLLGELNRLQGTAFLVVTHDLQL 208
|
Length = 233 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RK 395
G L+ ++ + VAL+GP+G GKST L ++ G TP+ G +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 396 SPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR------QLGMFGLPSY 445
+ R R +G QH LFP T + + +K+ ++ L + L
Sbjct: 73 AVRDRKVGFVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL 130
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 501
A P LSGGQ+ RVALA P +L+LDEP LD E L +
Sbjct: 131 ADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 502 GVILVSHDERLIRETDCELWALEKKNIRK 530
+ V+HD+ E + L + I +
Sbjct: 190 TTVFVTHDQEEALELADRVVVLNQGRIEQ 218
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
+ + +++ YP GK L+ V+ ++ VAL+GP+G GKST L L G + P G +
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 395 -------------KSPRLRIGK-FDQHSGEHLFPDDTPCEYLM-----------KLFNLP 429
+ R +IG F Q +L + E ++ LF L
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQF---NLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 430 YEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
++ +++ L GL A+ LSGGQ+ RVA+A + P +++ DEP +LD
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQ-RADQLSGGQQQRVAIARALMQQPKLILADEPVASLD 176
Query: 486 IES----IDALAEAIKNYQGGVILVSHDERLIRE 515
S +D L + VI+ H L RE
Sbjct: 177 PASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----- 394
D+ F Y G L+ ++ + S+ AL+GPNG GKST L L G P +G ++
Sbjct: 9 DLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGRE 68
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR---QLGMFGL 442
K R ++G Q + +F + N+ E RR L +
Sbjct: 69 VNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM 128
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQ 500
+ P LS GQK RVA+A + +PD+++LDEP LD + L E + + Q
Sbjct: 129 WDFRDKPPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 501 GG-VILVSHDERLIRETDCELWA 522
G VI+ +HD L E WA
Sbjct: 188 GKTVIVATHDVDLAAE-----WA 205
|
Length = 274 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 61/190 (32%), Positives = 83/190 (43%), Gaps = 26/190 (13%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------- 393
G P K L+ VN ++ V L+G G GKST + L G L P G++
Sbjct: 15 GTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDK 74
Query: 394 ---RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP------YEKSRRQLGMFGLP- 443
R ++G Q+ LF + + NL + +R + + GL
Sbjct: 75 KVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY 134
Query: 444 -SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN---- 498
Y P +LSGGQK RVA+A + P ILILDEPT LD + D + IK
Sbjct: 135 EDYKDKSPF-ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193
Query: 499 YQGGVILVSH 508
Y +ILVSH
Sbjct: 194 YNMTIILVSH 203
|
Length = 287 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+ + +V Y G K++++ ++F + L+GPNG GK+T L +L G P+
Sbjct: 3 MSVAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 391 GELR----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQL 437
G + + R R+G Q ++L PD T E L+ + F L +R +
Sbjct: 62 GSISLCGEPVPSRARHARQRVGVVPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALV 119
Query: 438 GMF----GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L + A + +LSGG K R+ LA +N+PD+L+LDEPT LD
Sbjct: 120 PPLLEFAKLENKADA-KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 4e-16
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L + +VT + G L+ ++F ++ L+GPNG GK+T + ++ G + P+ GE+
Sbjct: 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFG 441
+ R RIG + G L+P + YL +L L E++RR+ L
Sbjct: 60 DGKPLDIAARNRIGYLPEERG--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLE 117
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
L YA+ + +LS G + +V +++P++LILDEP + LD +++ L + I+
Sbjct: 118 LSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 502 G---VILVSH 508
VIL +H
Sbjct: 177 AGKTVILSTH 186
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 5e-16
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 40/194 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----------RK 395
GG+++++ V+ S L+GPNG GKST L LL G L P+ G + R+
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYL--MKLFNLPY------------EKSRRQLGMFG 441
+ R+ +Q S P + L +P+ R L
Sbjct: 72 ARARRVALVEQDS-----DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 442 LPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
L A RD LSGG++ RV +A P +L+LDEPTN+LD+ + ++
Sbjct: 127 LSHLAD----RDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 499 YQGG---VILVSHD 509
V+ HD
Sbjct: 183 LAATGVTVVAALHD 196
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 6e-16
Identities = 65/208 (31%), Positives = 91/208 (43%), Gaps = 49/208 (23%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
++F Y G + L+ V+F + VAL+GPNG GKST +LL +G+
Sbjct: 6 GLSFRY-GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHD 64
Query: 393 LRKSPR---LRIGK-FDQHSGEHLFPDDTPCEYLMKLFNLPYEK-----SRRQ------- 436
LR++PR R+G F Q + L D L NL Y SR +
Sbjct: 65 LRRAPRAALARLGVVFQQPT---LDLD------LSVRQNLRYHAALHGLSRAEARARIAE 115
Query: 437 -LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
L GL A +R+L+GG + RV +A L+ P +L+LDEPT LD S A
Sbjct: 116 LLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA---- 170
Query: 496 IKNYQGGVILVSHDERLIRETD-CELWA 522
+ +H L R+ LWA
Sbjct: 171 ---------ITAHVRALARDQGLSVLWA 189
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-16
Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 52/240 (21%)
Query: 317 REYIVKFRFPNPPY-LPPP--VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNG 372
E + + +P LP P L + +VT PGGK L ++F L +A++GP+G
Sbjct: 295 NELLANYPSRDPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSG 354
Query: 373 IGKSTFLNLLKGELTPNKG-------ELRKSPRLRIGK-----------FDQHSGEHL-- 412
GKST L+ G P G +L++ R GK F E++
Sbjct: 355 SGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414
Query: 413 FPDDTPCEYLMK----------LFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460
F ++ E +++ + LP Y+ +G G LSGGQ+
Sbjct: 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTV---IGPGGAT----------LSGGQRQ 461
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERLIRETD 517
R+ALA +P +++LDEP +NLD E ALA AIK + V++++H L+ D
Sbjct: 462 RIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVD 521
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 8e-16
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
K++F L+ E + G +G GKST L + G P+ G + + + FD +L
Sbjct: 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVL---FDSRKKINLP 71
Query: 414 PDDTPCEYLMK---LF-------NLPY------EKSRRQ-----LGMFGLPSYAHTIPIR 452
P + + LF NL + + R L + GL +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR-YPA 130
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSH 508
LSGG+K RVALA P++L+LDEP + LD + L + KN VI V+H
Sbjct: 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190
Query: 509 D 509
D
Sbjct: 191 D 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 33/196 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
V + DV+F G++ L+G NG GK+T L ++ L P+ G
Sbjct: 12 GSKVQAVRDVSFEAEEGEI--------------TGLLGENGAGKTTLLRMIATLLIPDSG 57
Query: 392 E-------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG------ 438
+ + P K GE +K F SR+++
Sbjct: 58 KVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAEL 117
Query: 439 --MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L Y + + S G K +VA+A +++P IL+LDEPT+ LDI + + I
Sbjct: 118 SKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 497 ---KNYQGGVILVSHD 509
KN VI SH
Sbjct: 177 KQLKNEGRAVIFSSHI 192
|
Length = 245 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 23/196 (11%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------ 393
D+ + YP G L+ +NF + VAL+GPNG GKST G L P GE+
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 394 ----RKS---PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKSRRQLGMF 440
+KS R +G Q+ + LF + NL ++ + L
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV 125
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--N 498
G+ + + P LSGGQK RVA+A + P+I++LDEPT+ LD + + + N
Sbjct: 126 GMEGFENKPP-HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 499 YQGGVILVS-HDERLI 513
+G I++S HD L+
Sbjct: 185 KEGITIIISTHDVDLV 200
|
Length = 275 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 1e-15
Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRKSPRLRIGKF 404
GG V L+ V+ + L+GP+G GK+T L L+ G TP GE L +
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH 70
Query: 405 DQHSGE-----HLFPDDTPCE---YLMKLFNLPY----EKSRRQLGMFGLPSYAHTIPIR 452
+ LFP T E + ++L LP E+ L + L YA+ P
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-S 129
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSH 508
LSGGQ+ RVA+A +N P +L+LDEP LD++ + +K Q + + V+H
Sbjct: 130 QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTH 189
Query: 509 DE 510
D+
Sbjct: 190 DQ 191
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 59/195 (30%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L L +V + +VL + VN ++ V L+GP+G GKST L ++ G P GE+
Sbjct: 4 LELKNVRKSFGSFEVLKD-VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 395 -------KSPRLR-IGK-FDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LG 438
P R I F ++ L+P T E + +KL +P + ++
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNYA---LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK 119
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+ GL + P LSGGQ+ RVALA + P + +LDEP +NLD + + IK
Sbjct: 120 LLGLEHLLNRKP-LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178
Query: 499 YQG----GVILVSHD 509
I V+HD
Sbjct: 179 LHERLGTTTIYVTHD 193
|
Length = 338 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 2e-15
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 31/187 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--RKSP------- 397
G +L ++ + +A+ GP+G GKST L ++ ++P G L
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGLPSYA 446
R ++ Q LF D T + L+ P++ R+ L F LP
Sbjct: 74 AYRQQVSYCAQTPA--LFGD-TVEDNLI----FPWQIRNRRPDRAAALDLLARFALPDSI 126
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGG 502
T I +LSGG+K R+AL P IL+LDE T+ LD + + E I Y
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186
Query: 503 VILVSHD 509
V+ ++HD
Sbjct: 187 VLWITHD 193
|
Length = 223 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 32/207 (15%)
Query: 338 LHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
L +V+ + L+ V+ + ++G +G GKST L L+ P G
Sbjct: 4 LENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV 63
Query: 392 --------ELRKSP----RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ 436
L ++ R +IG QH +L T E + ++L +P + +++
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 437 ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L + GL A P LSGGQK RVA+A NNP IL+ DE T+ LD E+ ++
Sbjct: 122 VAELLELVGLSDKADRYP-AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180
Query: 493 AEAIK--NYQGG--VILVSHDERLIRE 515
E +K N + G ++L++H+ +++
Sbjct: 181 LELLKDINRELGLTIVLITHEMEVVKR 207
|
Length = 339 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-15
Identities = 53/197 (26%), Positives = 91/197 (46%), Gaps = 27/197 (13%)
Query: 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+L + ++ Y G + LE V+ + V ++GP+G GK+T LNL+ G +TP++G
Sbjct: 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGS 61
Query: 393 LRKSPRLRIGK-------FDQHSGEHLFP-----DDTPCEYLMKLFNLP----YEKSRRQ 436
++ + R G F + L P D+ + ++L + E + +
Sbjct: 62 IQLNGRRIEGPGAERGVVFQNEA---LLPWLNVIDNV--AFGLQLRGIEKAQRREIAHQM 116
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESI-DAL 492
L + GL H LSGG + RV +A P +L+LDEP LD E + + L
Sbjct: 117 LALVGLEGAEHKYIW-QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
Query: 493 AEAIKNYQGGVILVSHD 509
+ + V+L++HD
Sbjct: 176 LDLWQETGKQVLLITHD 192
|
Length = 259 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 54/212 (25%), Positives = 90/212 (42%), Gaps = 29/212 (13%)
Query: 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 402
L+ ++F + RV ++G NG GKST L L+ G P G+++ + ++
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL 93
Query: 403 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRR---------QLGMFGLPSYAHTIP 450
+ +G P+ T E + L ++ +LG F P
Sbjct: 94 -IELGAG--FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI------DQP 144
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----SIDALAEAIKNYQGGVILV 506
++ S G AR+A + T PDIL+LDE D ++ L E ++ ++LV
Sbjct: 145 VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK-NKTIVLV 203
Query: 507 SHDERLIRET-DCELWALEKKNIRKFNGDFDD 537
SHD I++ D +W LE IR G ++
Sbjct: 204 SHDLGAIKQYCDRAIW-LEHGQIR-MEGSPEE 233
|
Length = 249 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 5e-15
Identities = 72/229 (31%), Positives = 94/229 (41%), Gaps = 52/229 (22%)
Query: 328 PPYLPPP--VLGL---HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
PP V G DV+F Y + +E V+F VA+VGP G GKST +NLL
Sbjct: 322 PPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
Query: 383 KGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLF------------PDDTPC 419
+ P G + R S R I Q +G LF PD T
Sbjct: 382 QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAG--LFNRSIEDNIRVGRPDATDE 439
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPS---YAHTIPIR--DLSGGQKARVALAELTLNNPDI 474
E R Q F Y + R LSGG++ R+A+A L +P I
Sbjct: 440 EMRAAA-------ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 475 LILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERL--IRETD 517
LILDE T+ LD+E+ AL E +K +I +H RL +R D
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFII--AH--RLSTVRNAD 537
|
Length = 588 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 21/175 (12%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSGEH 411
++F + V +G NG GKST L +L G L P G++R K P R ++ + G
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 412 LF---------PDDTPCEYLMKLFNLPYEKSRRQLG----MFGLPSYAHTIPIRDLSGGQ 458
+ P E L ++ +P ++ +L + L + P+R LS GQ
Sbjct: 103 MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQ 161
Query: 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+ R LA L+ P +L LDEPT LD+ + + E +K Y Q V+L +H
Sbjct: 162 RMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI 216
|
Length = 325 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 5e-15
Identities = 55/192 (28%), Positives = 81/192 (42%), Gaps = 34/192 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
V + V+F G+V L+GPNG GK+T L +L G L P+ G
Sbjct: 17 TVQAVDGVSFTVKPGEV--------------TGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62
Query: 392 -----ELRKSP---RLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNL-PYEKSRRQLGM 439
++ K P R R+G L+ T E Y L+ L E + R +
Sbjct: 63 TVDGFDVVKEPAEARRRLGFVS--DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 440 FGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
+ R S G + +VA+A +++P +L+LDEPT LD+ + AL E I+
Sbjct: 121 ADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 498 NY--QGGVILVS 507
G IL S
Sbjct: 181 QLRALGKCILFS 192
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-15
Identities = 59/205 (28%), Positives = 88/205 (42%), Gaps = 34/205 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRV-ALVGPNGIGKSTFLNLLKGELTPNK 390
PP+L L ++ + G K L + V+ + V AL+G NG GKST + +L G P+
Sbjct: 5 TPPLLELRGISKSFGGVKAL-DGVSLTV-RPGEVHALLGENGAGKSTLMKILSGVYPPDS 62
Query: 391 GELR--------KSPR----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--------- 429
GE+ SPR I Q L P+ + E + L P
Sbjct: 63 GEILIDGKPVAFSSPRDALAAGIATVHQEL--SLVPNLSVAENIF-LGREPTRRFGLIDR 119
Query: 430 ---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++R L GL T + DLS Q+ V +A + +LILDEPT L +
Sbjct: 120 KAMRRRARELLARLGLDIDPDT-LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
Query: 487 ESIDALAEAIKNY--QG-GVILVSH 508
+ + L + I+ QG +I +SH
Sbjct: 179 KETERLFDLIRRLKAQGVAIIYISH 203
|
Length = 500 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 6e-15
Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P++ L +V+ GK +L +++ ++ A+VGPNG GK+T L+LL GE P+ G
Sbjct: 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 392 ----------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNL 428
ELRK RIG E +T + ++ ++
Sbjct: 87 DVTLLGRRFGKGETIFELRK----RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQE 142
Query: 429 PYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L + G A P LS G++ RV +A + +P++LILDEP
Sbjct: 143 DLTAEDLAAAQWLLELLGAKHLADR-PFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 484 LDIESIDALAE-----AIKNYQGGVILVSH 508
LD+ + + L A ++ V+H
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 8e-15
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 39/167 (23%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
+ G K L + V+ + AL+G NG GKST + +L G P+ GE+
Sbjct: 10 FGGVKAL-DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL---------V 59
Query: 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464
D G+ + F P + R + M + LS G++ V +
Sbjct: 60 D---GKEV------------SFASPRDARRAGIAM-----------VYQLSVGERQMVEI 93
Query: 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 508
A N +LILDEPT L ++ L + I+ QG VI +SH
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 9e-15
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
L L V + Y + L + + + VA++GP+G GKST LNL+ G + P G +
Sbjct: 1 LALDKVRYEY---EHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
Query: 394 ------RKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFNLPYEKSRRQLG 438
+P R F +++ LF T + + +KL EK
Sbjct: 58 NDQSHTGLAPYQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ 114
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
G+ Y +P LSGGQ+ RVALA + IL+LDEP + LD E + + +
Sbjct: 115 QVGIADYLDRLP-EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173
Query: 495 AIKNYQGGVILVSH 508
Q +++V+H
Sbjct: 174 LCSERQRTLLMVTH 187
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------- 394
G P K L+ ++F L+ S VALVG G GKST + L P+ G +
Sbjct: 15 GTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPE 74
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFG 441
K R ++ Q LF ++T + + K F ++++ + L G
Sbjct: 75 TGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVG 133
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
L + +LSGGQ RVA+A + P+IL LDEP LD E + + K+YQ
Sbjct: 134 LSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193
Query: 502 G---VILVSHDERLIRETDCELWALEKKNIRK 530
VILV+H+ + E ++ LE + K
Sbjct: 194 AGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 1e-14
Identities = 66/195 (33%), Positives = 86/195 (44%), Gaps = 22/195 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KG 391
+L L +V+ PG LL VNF + V L+GP+G GKST L+ + G L G
Sbjct: 2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTG 60
Query: 392 ELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE---KSRRQ-----LG 438
EL RL + Q LF D +L LF LP +RR L
Sbjct: 61 ELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALE 120
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
GL H P LSGGQ+ARVAL L P L+LDEP + LD+ D + + +
Sbjct: 121 RSGLDGAFHQDP-ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFS 179
Query: 499 YQGG----VILVSHD 509
+ V+HD
Sbjct: 180 EVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-14
Identities = 67/222 (30%), Positives = 93/222 (41%), Gaps = 64/222 (28%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDME--SRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L ++TFGY P L+E NF L ++ RVALVG +G GKST L+ G P GE+
Sbjct: 480 LRNITFGYSPLEPPLIE--NFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----KLFNLPYEKS-RRQLGMFGLPSYAHT 448
FD E + + M LF E + R L ++ T
Sbjct: 538 ---------FDGIPREEIPREVLANSVAMVDQDIFLF----EGTVRDNLTLWD-----PT 579
Query: 449 IPIRDL-------------------------------SGGQKARVALAELTLNNPDILIL 477
IP DL SGGQ+ R+ +A + NP ILIL
Sbjct: 580 IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639
Query: 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL--IRETD 517
DE T+ LD E+ + + ++ I+V+H RL IR+ D
Sbjct: 640 DEATSALDPETEKIIDDNLRRRGCTCIIVAH--RLSTIRDCD 679
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 28/188 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------- 393
G KV+L+ +N ++ A++G +G GKST LN++ + G++
Sbjct: 9 GDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSK 68
Query: 394 --RKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPY----EKSRRQLGMFGLPS 444
K R ++G Q+ L ++T E L +K L EK + L GL
Sbjct: 69 KASKFRREKLGYLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL 126
Query: 445 YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGG 502
I +LSGG++ RVALA L P +++ DEPT +LD ++ D + + + N +G
Sbjct: 127 KLKQ-KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 503 -VILVSHD 509
+I+V+HD
Sbjct: 186 TIIIVTHD 193
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 28/197 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----- 392
+V+ Y G K ++ VN ++ + L+GP+G GK+T L ++ + P GE
Sbjct: 4 FENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDG 62
Query: 393 --LRKSP----RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQ------LGM 439
+ R +IG Q G LFP T E + + L ++K R + L +
Sbjct: 63 EDISDLDPVELRRKIGYVIQQIG--LFPHLTVAENIATVPKLLGWDKERIKKRADELLDL 120
Query: 440 FGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL YA P +LSGGQ+ RV +A +P IL++DEP LD + L E IK
Sbjct: 121 VGLDPSEYADRYP-HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 498 NYQGG----VILVSHDE 510
Q ++ V+HD
Sbjct: 180 ELQKELGKTIVFVTHDI 196
|
Length = 309 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 29/220 (13%)
Query: 317 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKS 376
R V R V L K LL+ V+ +A++G +G GK+
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKT 65
Query: 377 TFLNLLKGELTPN---------KGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLM--- 423
T +N L G + +R I + Q + P T E+LM
Sbjct: 66 TLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD-DLFIPTLTVREHLMFQA 124
Query: 424 --KLFNLPYEKSRRQ-----LGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNN 471
++ +K +R+ L GL A+T ++ LSGG++ R+A A L +
Sbjct: 125 HLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTD 184
Query: 472 PDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSH 508
P +L DEPT+ LD ++ + +K Q G +I H
Sbjct: 185 PPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 43/201 (21%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
V+G++D + G++ + ++G +G GKST + LL + P +GE
Sbjct: 41 VVGVNDASLDVEEGEIFV--------------IMGLSGSGKSTLVRLLNRLIEPTRGEIL 86
Query: 393 -------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEK 432
LR+ R +I Q L P T E + +++ +P E+
Sbjct: 87 VDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPKAEREER 144
Query: 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IES 488
+ L + GL YA P +LSGG + RV LA N+PDIL++DE + LD E
Sbjct: 145 ALEALELVGLEGYADKYP-NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 489 IDALAEAIKNYQGGVILVSHD 509
D L E + ++ ++HD
Sbjct: 204 QDELLELQAKLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 47/220 (21%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L D+T P G+ L+ L+GP+G GKS+ L +L P G L
Sbjct: 18 LFDITLDCPEGETLV--------------LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63
Query: 395 ------KSP--------RLRIGK-FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSRR 435
K+P R +G F Q+ +L+P T E L ++ L +++
Sbjct: 64 NHFDFSKTPSDKAIRDLRRNVGMVFQQY---NLWPHLTVQENLIEAPCRVLGLSKDQALA 120
Query: 436 Q----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L L YA P+ LSGGQ+ RVA+A + P +L+ DEPT LD E
Sbjct: 121 RAEKLLKRLRLKPYADRYPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 492 LAEAIKNYQGGVI---LVSHDERLIRETDCELWALEKKNI 528
+ IK I +V+H+ + R+T + +E +I
Sbjct: 180 IVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-14
Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 45/199 (22%)
Query: 341 VTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
VTF YPG + L+ ++ ++ VALVG +G GKST +NL+ P+ G+
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 393 ----LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRRQLGMF 440
S R ++ Q LF +DT N+ Y + R L
Sbjct: 396 LADYTLASLRRQVALVSQDV--VLF-NDTIAN------NIAYGRTEQADRAEIERALAAA 446
Query: 441 -------GLPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
LP T PI + LSGGQ+ R+A+A L + ILILDE T+ LD ES
Sbjct: 447 YAQDFVDKLPLGLDT-PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505
Query: 489 ---IDALAEAIKNYQGGVI 504
AL ++ VI
Sbjct: 506 RLVQAALERLMQGRTTLVI 524
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 5e-14
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 43/202 (21%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----- 388
+G++DV+ G++ + ++G +G GKST L + + P
Sbjct: 36 QTVGVNDVSLDVREGEIFV--------------IMGLSGSGKSTLLRCINRLIEPTSGKV 81
Query: 389 ----------NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YE 431
++ ELR+ R +I Q L P T E + +++ +P E
Sbjct: 82 LIDGQDIAAMSRKELRELRRKKISMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREE 139
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IE 487
++ L + GL + H P +LSGG + RV LA +PDIL++DE + LD E
Sbjct: 140 RAAEALELVGLEGWEHKYP-DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198
Query: 488 SIDALAEAIKNYQGGVILVSHD 509
D L Q ++ ++HD
Sbjct: 199 MQDELLRLQAELQKTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 5e-14
Identities = 68/202 (33%), Positives = 95/202 (47%), Gaps = 37/202 (18%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------- 393
V+ Y GG+ L+ V F + L G +G GKST L L+ G P+ G++
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDI 66
Query: 394 -----RKSPRLR--IGK-FDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LG 438
R+ P LR IG F H HL D T + + + + + RR+ L
Sbjct: 67 TRLKNREVPFLRRQIGMIFQDH---HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALD 123
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
GL A PI+ LSGG++ RV +A +N P +L+ DEPT NLD DAL+E I
Sbjct: 124 KVGLLDKAKNFPIQ-LSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEGILR 178
Query: 498 -----NYQG-GVILVSHDERLI 513
N G V++ +HD LI
Sbjct: 179 LFEEFNRVGVTVLMATHDIGLI 200
|
Length = 222 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 23/178 (12%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIG 402
L+ V+ ++ ++GP G GKS L + G + P+ G++ + I
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 403 KFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQL----GMFGLPSYAHTIPIRDLS 455
Q LFP T Y +K + ++ R++ M G+ + P LS
Sbjct: 75 YVPQ--NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-LS 131
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
GG++ RVA+A + NP IL+LDEP + LD+ + + L + K + V+ V+HD
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 8e-14
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 35/163 (21%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG------KFDQHSGEHLFPDDTP 418
+ +VGPNGIGK+TF LL G L P++GE+ P L+I K D D T
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGEV--DPELKISYKPQYIKPDY--------DGTV 417
Query: 419 CEYLMKL---FNLPYEKSR--RQLGMFGLPSYAHTI---PIRDLSGGQKARVALAELTLN 470
+ L + Y KS + L + + ++DLSGG+ RVA+A
Sbjct: 418 EDLLRSITDDLGSSYYKSEIIKPLQL-------ERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+ D+ +LDEP+ +LD+E A+A+AI+ + ++V HD
Sbjct: 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
|
Length = 590 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 298 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 357
R ++ +E+ + I + + P + + L V+ Y G K ++ ++F
Sbjct: 4 RAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY-GDKAVVNGLSF 62
Query: 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRIGKFDQH 407
+ L+GPNG GKST ++ G +P+ G++ + R RIG Q
Sbjct: 63 TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQF 122
Query: 408 SGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHTIPIRDLSGGQK 459
++L + T E L+ +F + S R+ L L S A + DLSGG K
Sbjct: 123 --DNLDLEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADA-RVSDLSGGMK 178
Query: 460 ARVALAELTLNNPDILILDEPTNNLD 485
R+ LA +N+P +LILDEPT LD
Sbjct: 179 RRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-13
Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 31/201 (15%)
Query: 342 TFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--------- 391
FG GGKV L+ V+ + ++G +G GKST + + G P G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDL 69
Query: 392 ------ELRKSPRLRIGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLG 438
ELRK+ R RIG QH +L T E +++ +P E+ L
Sbjct: 70 TLLSGKELRKA-RRRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE 126
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
+ GL A P LSGGQK RV +A NNP +L+ DE T+ LD E+ ++ ++
Sbjct: 127 LVGLEDKADAYP-AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185
Query: 498 -NYQGG--VILVSHDERLIRE 515
N + G ++L++H+ +++
Sbjct: 186 INRELGLTIVLITHEMEVVKR 206
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 58/201 (28%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------------R 394
K +L +N ++ V L GP+G GK+T L L+ G + +G L
Sbjct: 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKEL 77
Query: 395 KSPRLRIGK-FDQHS-------------GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
R IG F H+ L P+ + E E++R L
Sbjct: 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQE--------ARERARAMLEAV 129
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-- 498
GL + P +LSGGQK RVA+A ++ P +++ DEPT LD +S + E ++
Sbjct: 130 GLGDHLDYYP-HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA 188
Query: 499 -YQGGVIL-VSHDERLIRETD 517
QG IL V+HD R++ D
Sbjct: 189 REQGCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 354 KVNFGLDMESR----VALVGPNGIGKST----FLNLLK---GELTPNKGELRKSPRLRIG 402
K + E L+GPNG GK+T L LL+ GE+T N G L + + RIG
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75
Query: 403 KFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLGM----FGLPSYAHTIPIRDLS 455
+ G L+P T + YL +L +P + +++L + I++LS
Sbjct: 76 YLPEERG--LYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELS 132
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS-----H 508
G + ++ ++ P++LILDEP + LD +++ L +AI +G I+ S H
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192
Query: 509 DERLIRETDCELWALEKKNIRKFNGDFDDYR 539
E L C+ + KK G +D R
Sbjct: 193 VEEL-----CDRLLMLKKGQTVLYGTVEDIR 218
|
Length = 300 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-13
Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 27/196 (13%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTP 388
+ L +++ P G+ LL ++NF + R+ + G +G GK++ L L G ++
Sbjct: 393 ITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM 452
Query: 389 NKGE----LRKSPRLRIGKFDQH----SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
L + P L G + + F D L K+ L R +
Sbjct: 453 PADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV-GLGDLAER----LD 507
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-- 498
+ LSGG++ R+A A L L+ P + LDE T+ LD E+ D L + +K
Sbjct: 508 EEDRWDRV-----LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562
Query: 499 YQGGVILVSHDERLIR 514
VI V H L
Sbjct: 563 PDATVISVGHRPTLWN 578
|
Length = 604 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 55/199 (27%), Positives = 83/199 (41%), Gaps = 29/199 (14%)
Query: 340 DVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
+V++ Y G + VN + A+VG G GKST + + L P G +
Sbjct: 7 NVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFNLPYEKSR---- 434
+ R RIG Q LF D E + K F + ++ +
Sbjct: 67 DDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAH 126
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
R L G + +SGGQ ++A+ + NPDI++LDEPT LD +S +
Sbjct: 127 RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR 186
Query: 495 AIKNYQ----GGVILVSHD 509
+K+ Q +ILVSHD
Sbjct: 187 LLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 23/165 (13%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKS--------PRLR-IGKFDQHSGEHLFPDDT 417
L+GP+G GK+T L LL G P+ G + P LR I Q LFP T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMT 58
Query: 418 PCE---YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470
E + +K+ +P + L + L +A P + LSGGQ+ RVALA +
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQ-LSGGQQQRVALARALVF 117
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG----GVILVSHDER 511
P IL+LDEP + LD + D + +K Q + V+HD+
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 67/209 (32%), Positives = 93/209 (44%), Gaps = 42/209 (20%)
Query: 326 PNPPYLPPPV-LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384
N L L L+ V+ Y G + +L +++ + VA+VG +G GKST L LL G
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG 60
Query: 385 ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEK-------- 432
TP+ GEL G +DT LM F LP++K
Sbjct: 61 LETPSAGELLA------GTAPLAEAR----EDT---RLM--FQDARLLPWKKVIDNVGLG 105
Query: 433 --------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
+ + L GL A+ P LSGGQK RVALA ++ P +L+LDEP L
Sbjct: 106 LKGQWRDAALQALAAVGLADRANEWPAA-LSGGQKQRVALARALIHRPGLLLLDEPLGAL 164
Query: 485 D----IESIDALAEAIKNYQGGVILVSHD 509
D IE D + + + V+LV+HD
Sbjct: 165 DALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 53/220 (24%)
Query: 317 REYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR-------VALVG 369
R ++F PP D YP K +F L++E + ++G
Sbjct: 322 RPEEIEFEEK-----PPRDDKARDTLVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILG 374
Query: 370 PNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG--------KFDQHSGEHLFPDDTPCEY 421
PNGIGK+TF+ LL G + P++G L++ +D + E L +
Sbjct: 375 PNGIGKTTFVKLLAGVIKPDEG---SEEDLKVSYKPQYISPDYD-GTVEDLLRSAIRSAF 430
Query: 422 --------LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473
++K NL R P+ +LSGG+ RVA+A D
Sbjct: 431 GSSYFKTEIVKPLNLEDLLER---------------PVDELSGGELQRVAIAAALSREAD 475
Query: 474 ILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHD 509
+ +LDEP+ LD+E +A+ I+ N + ++V HD
Sbjct: 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHD 515
|
Length = 591 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-13
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 40/216 (18%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG--- 391
+L + +++ YP GK L+ +N ++ VA++GP+G GKST L + + P+ G
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 392 ------------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM-----------KLFNL 428
+LRK R RIG QH +L T E ++ L
Sbjct: 61 LEGTDITKLRGKKLRKL-RRRIGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLG- 116
Query: 429 PYEKSRRQLGM-----FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
+ + ++ + GL A+ LSGGQ+ RVA+A PD+++ DEP +
Sbjct: 117 RFSEEDKERALSALERVGLADKAYQ-RADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175
Query: 484 LDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
LD ++ +D L K VI+ H L ++
Sbjct: 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK 211
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 3e-13
Identities = 54/219 (24%), Positives = 82/219 (37%), Gaps = 61/219 (27%)
Query: 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
+ + D +F + G L+ +N + VA+VGP G GKS+ L+ L GEL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPS 444
+ I Q P ++ LF P+++ R
Sbjct: 61 SVSVPGS--IAYVSQ----------EP--WIQNGTIRENILFGKPFDEER---------- 96
Query: 445 YAHTI------------PIRD----------LSGGQKARVALAELTLNNPDILILDEPTN 482
Y I P D LSGGQK R++LA ++ DI +LD+P +
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLS 156
Query: 483 NLDIESIDALAE-AIKNY-QGG--VILVSHDERLIRETD 517
+D + E I ILV+H +L+ D
Sbjct: 157 AVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHAD 195
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 44/202 (21%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKG 391
L L DV F Y + D+ VA++GP+G GKST LNL+ G TP G
Sbjct: 2 LALDDVRFSY-------GHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG 54
Query: 392 ELRKSPRLRIGKFDQHSG-------------EH-LFPDDTPCEYL-------MKLFNLPY 430
E + I D H+ E+ LF T + + +KL
Sbjct: 55 E------ILINGVD-HTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQR 107
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----I 486
EK GL + +P +LSGGQ+ RVALA + IL+LDEP + LD
Sbjct: 108 EKVEAAAAQVGLAGFLKRLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166
Query: 487 ESIDALAEAIKNYQGGVILVSH 508
E + +++ + +++V+H
Sbjct: 167 EMLALVSQLCDERKMTLLMVTH 188
|
Length = 231 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 67/192 (34%), Positives = 93/192 (48%), Gaps = 41/192 (21%)
Query: 340 DVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKG 391
+VTF YPG +V L +NF + VALVG +G GKST NLL +GE+ +
Sbjct: 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405
Query: 392 ELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK----SRRQLGMFGLP 443
+LR S R ++ Q+ HLF +DT N+ Y + SR Q+
Sbjct: 406 DLRDYTLASLRNQVALVSQNV--HLF-NDTIAN------NIAYARTEQYSREQIEEAARM 456
Query: 444 SYA-----------HTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+YA T+ I + LSGGQ+ R+A+A L + ILILDE T+ LD ES
Sbjct: 457 AYAMDFINKMDNGLDTV-IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 489 IDALAEAIKNYQ 500
A+ A+ Q
Sbjct: 516 ERAIQAALDELQ 527
|
Length = 582 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 24/202 (11%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+ +L + ++ + Y G L+ +N + A++G NG GKST L G L P+
Sbjct: 1 MEDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS 60
Query: 391 GEL----------RK---SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP------YE 431
G + RK R +G Q LF + NL +
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK 120
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ L G+ P LS GQK RVA+A + + P +L+LDEPT LD +
Sbjct: 121 RVDNALKRTGIEHLKDK-PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179
Query: 492 LAEAIKNYQGG----VILVSHD 509
+ + + Q +I+ +HD
Sbjct: 180 IMKLLVEMQKELGLTIIIATHD 201
|
Length = 283 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 4e-13
Identities = 57/179 (31%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G + + ++ + S L+GPNG GKST L ++ G L P GE+ + D
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH-PWTRKDL 69
Query: 407 HSGEHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLP-----SYAHTI--------PIR 452
H L ++P Y NL E + + GLP + + +
Sbjct: 70 HKIGSLI--ESPPLYE----NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAK 123
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QG-GVILVSH 508
S G K R+ +A LN+P +LILDEPTN LD I L E I+++ QG VIL SH
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 326 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
+P LP P+ G V F YP + L+ +N + VALVGP+G GKST
Sbjct: 325 AHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384
Query: 381 LLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429
LL P G + R R+ L P D + N+
Sbjct: 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMA---------LVPQDPVLFAASVMENIR 435
Query: 430 Y---EKSRRQLGMFGLPSYAHTIPIRD---------------LSGGQKARVALAELTLNN 471
Y + + ++ ++AH I LSGGQ+ R+A+A L +
Sbjct: 436 YGRPDATDEEVEAAARAAHAHEF-ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494
Query: 472 PDILILDEPTNNLDIESIDALAEAI 496
IL+LDE T+ LD ES + +A+
Sbjct: 495 APILLLDEATSALDAESEQLVQQAL 519
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-13
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
++EN S G N +L + +G LVGPNG GK+TLLR IA L P+S ++L
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIA--GLLKPTSGEILI 58
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLT---------EVY-- 169
+++ + + R+ + + SG + R+ ++
Sbjct: 59 DGKDIAKLPLEEL-------RRRIGYVPQL-------SGGQRQRVALARALLLNPDLLLL 104
Query: 170 DELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICT 229
DE S +P +R L L + E+ +T+++V+HD
Sbjct: 105 DEPTS----GLDPASRERLLEL-----------LRELAEE-GRTVIIVTHDPELAELAAD 148
Query: 230 DIIHLD 235
+I L
Sbjct: 149 RVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 69.2 bits (169), Expect = 7e-13
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 22/157 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KS 396
G KV++ ++F + L+GPNG GKST +L G ++P++G++ +
Sbjct: 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL 74
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--------LGMFGLPSYAHT 448
R+ IG Q ++L P+ T E L+ +F + S R+ L L S A
Sbjct: 75 ARVAIGVVPQF--DNLDPEFTVRENLL-VFGRYFGMSTREIEAVIPSLLEFARLESKADV 131
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ LSGG K R+ LA +N+P +LILDEPT LD
Sbjct: 132 -RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 9e-13
Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 23/214 (10%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G L+ VN + S VAL+GP+G GKST L ++ G P+ G + R R
Sbjct: 11 GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR 70
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
R IG QH LF T + + +++ P K + + L + L P
Sbjct: 71 DRKIGFVFQHYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP 128
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
LSGGQ+ RVALA P +L+LDEP LD + L ++ V + V
Sbjct: 129 -NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFV 187
Query: 507 SHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+HD+ E + + I + + Y
Sbjct: 188 THDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 30/200 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
L +V++ Y G + F +++ S A +G G GKST + LL G P +G +
Sbjct: 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64
Query: 394 R---------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKS-- 433
R K R ++G Q LF ++T + + + F + E++
Sbjct: 65 RVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEA 123
Query: 434 --RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
R +L + G+ +LSGGQ RVA+A + P IL+LDEPT LD +
Sbjct: 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183
Query: 492 LAEAIKN-YQGG--VILVSH 508
L K +Q G ++LV+H
Sbjct: 184 LMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 36/210 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L L +V + G +L ++F L + GP+G GKST L ++ ++P G L
Sbjct: 6 PLLQLQNVGY-LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 394 RKSPRLRIGKFDQHSGEHLFPDD-----TPCEYLMKLF------NL--PYE--------- 431
F+ L P+ + C LF NL P++
Sbjct: 65 L---------FEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA 115
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
L F LP T I +LSGG+K R++L P +L+LDE T+ LD +
Sbjct: 116 IFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175
Query: 492 LAEAIKNY----QGGVILVSHDERLIRETD 517
+ E I Y V+ V+HD+ I D
Sbjct: 176 VNEIIHRYVREQNIAVLWVTHDKDEINHAD 205
|
Length = 225 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L + ++ GY G +L V+ + VAL+G NG GK+T L + G L P G +R
Sbjct: 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59
Query: 395 -------KSPRLR----IGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQLG-MFG 441
P R IG + G +FP+ T E L + + K + +L ++
Sbjct: 60 DGRDITGLPPHERARAGIGYVPE--GRRIFPELTVEENLLLGAYARRRAKRKARLERVYE 117
Query: 442 L-P-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L P A T LSGG++ +A+A ++ P +L+LDEP+ L + ++ +
Sbjct: 118 LFPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 172
Query: 494 EAIK--NYQG-GVILVSHDERLIRE 515
EAI+ +G ++LV + R E
Sbjct: 173 EAIRELRDEGVTILLVEQNARFALE 197
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 56/229 (24%), Positives = 83/229 (36%), Gaps = 72/229 (31%)
Query: 341 VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------- 391
V+F G V ++ V+F L + +VG +G GKS + G L
Sbjct: 9 VSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68
Query: 392 ------------ELRK-----------------SPRLRIGKFDQHSGEHLFPDDTPCEYL 422
ELRK +P + IG + E L
Sbjct: 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGD-------QI------AEVL 115
Query: 423 MKLFNLP-----YEKSRRQLGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLN 470
E++ L + G+P SY H +LSGG + RV +A
Sbjct: 116 RLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH-----ELSGGMRQRVMIAMALAL 170
Query: 471 NPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRE 515
NP +LI DEPT LD+ +D L E + +IL++HD ++ E
Sbjct: 171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE 219
|
Length = 316 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 38/200 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
L +VT + G L+ +N + V L+GP+G GK+T L ++ G P G
Sbjct: 3 LENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG------ 55
Query: 398 RLRIGK----------------FDQHSGEHLFPDDTPCE---YLMKLFNLPY----EKSR 434
R+ IG F ++ L+P T + + +KL +P E+ R
Sbjct: 56 RIYIGGRDVTDLPPKDRDIAMVFQNYA---LYPHMTVYDNIAFGLKLRKVPKDEIDERVR 112
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESID 490
+ + P + LSGGQ+ RVAL + P + ++DEP +NLD ++
Sbjct: 113 EVAELLQIEHLLDRKP-KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 491 ALAEAIKNYQGGVILVSHDE 510
L + I V+HD+
Sbjct: 172 ELKRLQQRLGTTTIYVTHDQ 191
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 64/233 (27%), Positives = 89/233 (38%), Gaps = 81/233 (34%)
Query: 338 LHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+V+F YP +L ++ + VALVG +G GKST ++LL
Sbjct: 3 FKNVSFRYPSRPDVPILKG-LSLTIPPGKTVALVGSSGCGKSTVVSLL------------ 49
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM--------------- 439
R +D SGE L ++ NL + R Q+G+
Sbjct: 50 ----ERF--YDPTSGEILLDGVD-----IRDLNLRW--LRSQIGLVSQEPVLFDGTIAEN 96
Query: 440 --FGLPS-------------YAHTIPIRDL---------------SGGQKARVALAELTL 469
+G P H I L SGGQK R+A+A L
Sbjct: 97 IRYGKPDATDEEVEEAAKKANIHDF-IMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155
Query: 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
NP IL+LDE T+ LD ES + EA+ G I+++H RL IR D
Sbjct: 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH--RLSTIRNADL 206
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 52/205 (25%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN---------------LLKGE----LT 387
G K +L+ VN + A++GPNG GKST L GE L+
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74
Query: 388 PN----KG------------ELRKSPRLRIGKFDQHSGEHLFPDDTP-CEYLMKLFNLPY 430
P+ G + S LR + + P+ + +L L
Sbjct: 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
E R + SGG+K R + +L L P + ILDEP + LDI+++
Sbjct: 135 EFLERYVNE-------------GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK 181
Query: 491 ALAEAIKNYQG---GVILVSHDERL 512
+AE I + GV++++H +RL
Sbjct: 182 IVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
+TF + + V+F VA+VGP G GK+T +NLL+ P G++
Sbjct: 337 FRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396
Query: 394 -------RKSPRLRI-------GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
R+S R I G F++ E++ +++ + +
Sbjct: 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGAT-DEEVYEAAKAAAAHDFIL 455
Query: 440 FGLPSYAHTIPIR--DLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------ID 490
Y + R LSGG++ R+A+A L N IL+LDE T+ LD+E+ ID
Sbjct: 456 KRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAID 515
Query: 491 ALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
AL + + +++H +R D L+ + + I K G F + +K
Sbjct: 516 ALRKNRTTF-----IIAHRLSTVRNADLVLFLDQGRLIEK--GSFQELIQK 559
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-12
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 41/221 (18%)
Query: 334 PVLGLHDVTFGYPGGKVL----------LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 383
P+L + +++ Y K L ++ V+F L + LVG +G GKST +L
Sbjct: 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA 338
Query: 384 GELTPNKGE---------LRKSPRLRIGK-----F-DQHSGEHLFPDDTPCEYLMK--LF 426
G L P+ G L R+ + F D +S L P T + L +
Sbjct: 339 GLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSS--LNPRMTVGDILAEPLRI 396
Query: 427 NLPYEKSRRQ------LGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479
+ + R+ L + GLP + P +LSGGQ+ RVA+A P +LILDE
Sbjct: 397 HGGGSGAERRARVAELLELVGLPPEFLDRYP-HELSGGQRQRVAIARALALEPKLLILDE 455
Query: 480 PTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRET 516
P + LD + ++ L + + + +SHD ++R
Sbjct: 456 PVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYI 496
|
Length = 539 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-12
Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 25/144 (17%)
Query: 365 VALVGPNGIGKSTFLNLLKGELT---------PNKGELRKSPRLRIGKFDQHSGEHLFPD 415
+A++GP+G GKST LN L G + N + K R G Q + L+P
Sbjct: 97 LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD--DILYPH 154
Query: 416 DTPCEYLM--KLFNLPYEKSRRQ--------LGMFGLPSYAHTIP----IRDLSGGQKAR 461
T E L+ L LP ++++ + GL +TI IR +SGG++ R
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 462 VALAELTLNNPDILILDEPTNNLD 485
V++A L NP +LILDEPT+ LD
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 37/172 (21%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
A+VGP+G GKST LNL+ G TP G R+ I D P D P L
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSG------RVLINGVDV---TAAPPADRPVSMLF 76
Query: 424 K---LF---------------NLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
+ LF L RQ L GL +P +LSGG++
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-GELSGGERQ 135
Query: 461 RVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 508
RVALA + + + +L+LDEP LD E +D + + + V++V+H
Sbjct: 136 RVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTH 187
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 3e-12
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 23/158 (14%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKS-------PRLRIGKFDQHSGEHLFPDDT 417
+ ++GPNGIGK+TF+ +L G L P++G++ P+ ++ + L
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS---- 83
Query: 418 PCEYLMKLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475
+ PY K+ + L + + +P +LSGG+ RVA+A + DI
Sbjct: 84 --SITKDFYTHPYFKTEIAKPLQIEQI--LDREVP--ELSGGELQRVAIAACLSKDADIY 137
Query: 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHD 509
+LDEP+ LD+E ++ I+ + + +V HD
Sbjct: 138 LLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 4e-12
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 36/214 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P +L L V+ + G K L + ++F +D L+GPNG GK+T ++++ G+ P +G
Sbjct: 3 PIILYLDGVSVSFGGFKALND-LSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGE 61
Query: 392 -------ELRKSP-----RLRIG-KFDQHSGEHLFPDDTPCEYLM-----------KLFN 427
+L K P R IG KF + + +F + T E L LF
Sbjct: 62 VLFDGDTDLTKLPEHRIARAGIGRKFQKPT---VFENLTVRENLELALNRDKSVFASLFA 118
Query: 428 LPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
+ RR+ L GL LS GQK + + L +P +L+LDEP
Sbjct: 119 RLRAEERRRIDELLATIGLGDERD-RLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177
Query: 484 LDIESIDALAEAIKNYQGG--VILVSHDERLIRE 515
+ + AE +K+ G +++V HD +RE
Sbjct: 178 MTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211
|
Length = 249 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 4e-12
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 49/221 (22%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF---LNLLK----GEL---- 386
L D+T P G+ L+ L+GP+G GKS+ LNLL+ G L
Sbjct: 18 LFDITLDCPQGETLV--------------LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63
Query: 387 -------TPNKGELRKSPRLRIGK-FDQHSGEHLFPDDTPCEYL----MKLFNLPYEKSR 434
TP+ +R+ R +G F Q+ +L+P T + L ++ L +++
Sbjct: 64 NHFDFSKTPSDKAIREL-RRNVGMVFQQY---NLWPHLTVQQNLIEAPCRVLGLSKDQAL 119
Query: 435 RQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
+ L L YA P+ LSGGQ+ RVA+A + P +L+ DEPT LD E
Sbjct: 120 ARAEKLLERLRLKPYADRFPLH-LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITA 178
Query: 491 ALAEAIKNYQG-GV--ILVSHDERLIRETDCELWALEKKNI 528
+ I+ G+ ++V+H+ + R+T + +E +I
Sbjct: 179 QIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-12
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 24/182 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 400
GGK LE +N L+ + ++GP+G GK+T LNL+ G + G + + P
Sbjct: 12 GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE 71
Query: 401 IGKFDQHSGEHLFP-----DDTPCEYLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPI 451
G Q+ G L P D+ + ++L + + + L GL I
Sbjct: 72 RGVVFQNEG--LLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-YI 126
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAEAIKNYQGG-VILVS 507
LSGGQ+ RV +A NP +L+LDEP LD E + L + G V+L++
Sbjct: 127 WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT 186
Query: 508 HD 509
HD
Sbjct: 187 HD 188
|
Length = 255 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---G 391
L+DV+ G+V+ A++G +G GK+T L+ + G + G
Sbjct: 20 ARILNDVSLHVESGQVM--------------AILGSSGSGKTTLLDAISGRVEGGGTTSG 65
Query: 392 E--LRKSPRLRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLPYEKSRRQLGM-- 439
+ PR + +F + ++ DD L + LP + S
Sbjct: 66 QILFNGQPR-KPDQFQKCVA-YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV 123
Query: 440 --FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L A T I +SGG++ RV++A L +P +LILDEPT+ LD
Sbjct: 124 EDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 6e-12
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 340 DVTF--GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
TF G P K L ++ + V ++G NG GKST LN + G+L P G++
Sbjct: 8 TKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDG 67
Query: 394 ----RKSPR---LRIGKFDQHSGEHLFPDDTPCEYLM------KLFNLPYEKSRRQLGMF 440
+KS + + Q P+ T E L K L + R+ F
Sbjct: 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSF 127
Query: 441 ---------GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IE 487
GL + I LSGGQ+ ++L TL+ P IL+LDE T LD
Sbjct: 128 RERLARLGLGLENRLSD-RIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 488 SIDALAEAIKNYQGGVILVSH 508
++ A+ ++ ++ ++V+H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDM-ESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P+L L ++ + G K L ++ +D E RV ++GPNG GK+T ++++ G+ P++G
Sbjct: 1 PILYLEGLSVSFDGFKAL-NDLSLYVDPGELRV-IIGPNGAGKTTMMDVITGKTRPDEGS 58
Query: 392 ------ELRKSP-----RLRIG-KFDQHSGEHLFPDDTPCEYLM-------KLFNLPYEK 432
+L P R IG KF + + +F + T E L +F + +
Sbjct: 59 VLFGGTDLTGLPEHQIARAGIGRKFQKPT---VFENLTVFENLELALPRDKSVFASLFFR 115
Query: 433 SRR--------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
L GL A LS GQK + + L + +P +L+LDEP +
Sbjct: 116 LSAEEKDRIEEVLETIGLADEADR-LAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
Query: 485 DIESIDALAEAIKNYQGG--VILVSHDERLIRETDC 518
E + AE +K+ G V++V HD +R
Sbjct: 175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIAD 210
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 54/204 (26%), Positives = 83/204 (40%), Gaps = 48/204 (23%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------------- 394
L+ V+ ++ +A++G G GK+TF+ L L P+ G +
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 395 ------------------KSPRLRIGKFDQHSGEHLFPDDT-------PCEYLMKLFNLP 429
K R R+G Q + LF P +
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK-EEA 141
Query: 430 YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
+++ + + + GL SY P +LSGGQK RVALA + PD L+ DEPT LD +
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPF-ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG 200
Query: 489 IDALAEAIKN-YQGG--VILVSHD 509
+ + E N + G +ILV+HD
Sbjct: 201 VKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 9e-12
Identities = 53/208 (25%), Positives = 81/208 (38%), Gaps = 57/208 (27%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTPNKG 391
L + ++ Y +L G+ +E ++G NG+GK+T L L G L G
Sbjct: 1 LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55
Query: 392 EL--------RKSPRLR----IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439
+ + P R I Q G +FP T E NL G+
Sbjct: 56 SIRLDGEDITKLPPHERARAGIAYVPQ--GREIFPRLTVEE------NL-------LTGL 100
Query: 440 FGLPSYAHTIPIR-----------------DLSGGQKARVALAELTLNNPDILILDEPTN 482
LP + IP DLSGGQ+ ++A+A + P +L+LDEPT
Sbjct: 101 AALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE 160
Query: 483 NLDIESIDALAEAIK--NYQGG--VILV 506
+ I + I+ +GG ++LV
Sbjct: 161 GIQPSIIKDIGRVIRRLRAEGGMAILLV 188
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 9e-12
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG------ 391
+V++ GK +L+ ++ + + +VGP+G GKST + L+ + P +G
Sbjct: 6 FKEVSYS-SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDG 64
Query: 392 ---------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS---RRQLGM 439
+LR+ +IG Q HLF + T + + L EK+ L +
Sbjct: 65 VDIKTIDVIDLRR----KIGMVFQQP--HLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSI 117
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499
GL T +++LSGG+ RV++A NNP++L+LDEPT+ LD S + + E I
Sbjct: 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKL 177
Query: 500 QGG----VILVSHD 509
+ VI ++H+
Sbjct: 178 KNKMNLTVIWITHN 191
|
Length = 241 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 32/99 (32%), Positives = 64/99 (64%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509
P+ D SGG + R+ LA+ + D+L+LDEPTN+LD++++ L + +K+YQG +IL+SHD
Sbjct: 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHD 205
Query: 510 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548
+ ++ +E++++ ++ G++ + + T L +
Sbjct: 206 RDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATRLAQ 244
|
Length = 638 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR 400
+ F G L+ NF L AL GP+G GK++ +N++ G P++G + + R+
Sbjct: 4 LNFRQRLGNFALD-ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL 62
Query: 401 IGKFDQHSGEHLFPDDTPCEYLM---KLF-------NLPY--EKSRRQ-----LGMFGLP 443
D G L P+ Y+ +LF NL Y KS R + + G+
Sbjct: 63 ---VDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIE 119
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNY 499
P LSGG+K RVA+ L P++L++DEP +LD+ E + L
Sbjct: 120 HLLDRYPGT-LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 500 QGGVILVSH 508
++ VSH
Sbjct: 179 NIPILYVSH 187
|
Length = 352 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 1e-11
Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L + +++ GY G L V+ ++ VAL+G NG GK+T L + G + P G +
Sbjct: 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 394 --------RKSP----RLRIGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQL--G 438
P RL I + G +FP T E L + + ++++ +
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPE--GRRIFPRLTVEENLLLGAYARRDKEAQERDLEE 118
Query: 439 MFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
++ L + LSGG++ +A+A ++ P +L+LDEP+ L + ++ + EA
Sbjct: 119 VYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEA 178
Query: 496 IK--NYQGG--VILVSHDERLIRE 515
IK +GG ++LV + R E
Sbjct: 179 IKELRKEGGMTILLVEQNARFALE 202
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 39/196 (19%)
Query: 334 PVLGLHDVTFGYPGGKVL--------LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P+L + ++ +P GK ++ V+F + + LVG +G GKST L+ G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 386 LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-S 444
P GE+ F+ L ++ E+ L GLP
Sbjct: 63 EEPTSGEIL---------FEGKDITKLSKEER------------RERVLELLEKVGLPEE 101
Query: 445 YAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKN 498
+ + P +LSGGQ+ R+ +A L LN P +++ DEP + LD+ S+ A L + +
Sbjct: 102 FLYRYP-HELSGGQRQRIGIARALALN-PKLIVADEPVSALDV-SVQAQILNLLKDLQEE 158
Query: 499 YQGGVILVSHDERLIR 514
+ +SHD ++R
Sbjct: 159 LGLTYLFISHDLSVVR 174
|
Length = 268 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 20/164 (12%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------KSPRLRI 401
L++V+F V +GPNG GKST + ++ G L P+ G ++ K + I
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI 77
Query: 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDL 454
G +H+ L+ D EYL ++ + + +++ + + GL H I L
Sbjct: 78 GYLPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHK-KIGQL 134
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
S G + RV LA+ +++P +LILDEPT LD + + IKN
Sbjct: 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSPRL 399
G ++ VNF + +GPNG GK+T + +L L P G R + PR
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63
Query: 400 ---RIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTI 449
IG Q++ + D T E L +L+ LP E++ L +F L A
Sbjct: 64 VRRSIGIVPQYAS--VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADR 120
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 506
P+ SGG + R+ +A ++ PD+L LDEPT LD + I A+K ++L
Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180
Query: 507 SHD 509
+H
Sbjct: 181 THY 183
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 62/179 (34%), Positives = 83/179 (46%), Gaps = 21/179 (11%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
L +V++ YP G LE +N + + ++G NG GKST L G L P KG++
Sbjct: 4 LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63
Query: 394 ------RKSPRLR--IGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR----RQLG 438
K +R +G Q+ E F T E L + LP + R R L
Sbjct: 64 IDTGDFSKLQGIRKLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALA 122
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL Y H P + LSGGQ VALA + P+ LI DE T+ LD +S A+ E IK
Sbjct: 123 EIGLEKYRHRSP-KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180
|
Length = 274 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
+F L + A+ G +G GK+T + L+ G P++GE+ + R FD G L
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTL---FDSRKGIFLP 71
Query: 414 PDDTPCEYLMK---LF-------NLPYEKSR-----------RQLGMFGLPSYAHTIPIR 452
P+ Y+ + LF NL Y R R + + G+ +P
Sbjct: 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-G 130
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSH 508
LSGG+K RVA+ L++P +L++DEP LD E + L + ++ VSH
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 509 D 509
Sbjct: 191 S 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 53/183 (28%), Positives = 70/183 (38%), Gaps = 53/183 (28%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE---- 420
+ LVGPNG GKST L + G L P G ++ F E + E
Sbjct: 25 LHLVGPNGAGKSTLLARMAG-LLPGSGSIQ---------FAGQPLEAW----SAAELARH 70
Query: 421 --YL----MKLFNLP---Y-----------EKSRRQL----GMFGLPSYAHTIPIRDLSG 456
YL F +P Y E L GL + LSG
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR-SVNQLSG 129
Query: 457 GQKARVALAELTL-----NNPD--ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVS 507
G+ RV LA + L NP +L+LDEP N+LD+ AL + QG +++S
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189
Query: 508 -HD 509
HD
Sbjct: 190 SHD 192
|
Length = 248 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 58/203 (28%), Positives = 80/203 (39%), Gaps = 54/203 (26%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---- 393
L+D++ P GK+ AL+GPNG GKST L LTP G +
Sbjct: 18 LNDLSLSLPTGKI--------------TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGD 63
Query: 394 ----RKSPRL---RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----------EKSRRQ 436
S R R+ QH HL P+ L+ P+ + +R
Sbjct: 64 KPISMLSSRQLARRLALLPQH---HLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVN 120
Query: 437 LGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----E 487
M + DLSGGQ+ R LA + + +++LDEPT LDI E
Sbjct: 121 QAM----EQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 488 SIDALAEAIKNYQGG-VILVSHD 509
+ + E N QG V+ V HD
Sbjct: 177 LMRLMREL--NTQGKTVVTVLHD 197
|
Length = 255 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 28/194 (14%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
L L D+T+ Y L + + ++ RVA++GP+G GKST LNL+ G LTP G L
Sbjct: 2 LKLTDITWLYHH---LPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58
Query: 394 ------RKSPRLRIGK--FDQHSGEHLFPDDTPCEYL-------MKLFNLPYEKSRRQLG 438
P R F +++ LF T + + +KL EK
Sbjct: 59 NGQDHTTTPPSRRPVSMLFQENN---LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIAR 115
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
G+ +P LSGGQ+ RVALA + IL+LDEP + LD E + +++
Sbjct: 116 QMGIEDLLARLP-GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174
Query: 495 AIKNYQGGVILVSH 508
+ Q +++VSH
Sbjct: 175 VCQERQLTLLMVSH 188
|
Length = 232 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 73/258 (28%), Positives = 109/258 (42%), Gaps = 65/258 (25%)
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGL 359
D ++ +LL+ E V P+ P L P LG +V+F Y + +L ++F +
Sbjct: 230 LTDMEKMFDLLDVEAE--VSDA-PDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTI 286
Query: 360 DMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGELR----KSPRLRIGKFDQHS 408
+ VA+VG +G GKST L LL G +T + ++R +S R IG
Sbjct: 287 PLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG------ 340
Query: 409 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP--------SYAHTIPIRD------- 453
+ P DT LFN + +G P + A I D
Sbjct: 341 ---IVPQDTV------LFN----DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE 387
Query: 454 ------------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
LSGG+K RVA+A L NP ILILDE T+ LD + A+ A++
Sbjct: 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447
Query: 502 G--VILVSHDERLIRETD 517
G ++++H I + D
Sbjct: 448 GRTTLVIAHRLSTIIDAD 465
|
Length = 497 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P L + +PG K L + ++F AL+G NG GKST L +L G P+ G
Sbjct: 2 SPYLSFDGIGKTFPGVKAL-DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGS 60
Query: 393 LR---KSPRLRIGKFDQHSG------E-HLFPDDTPCEYLMKLFNLP-----------YE 431
+ + R +G E HL P+ T E L L LP
Sbjct: 61 ILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY-LGQLPHKGGIVNRRLLNY 119
Query: 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
++R QL G+ T P++ LS GQ+ V +A+ N ++ DEPT++L I+
Sbjct: 120 EAREQLEHLGVDIDPDT-PLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQ 178
Query: 492 LAEAIKNY--QGGVIL-VSH 508
L I+ +G VIL VSH
Sbjct: 179 LFRVIRELRAEGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 5e-11
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLR 400
G +L ++ +D V ++GP+G GKST L + G+L P++
Sbjct: 12 GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVD 71
Query: 401 IGKFDQHSGE-----HLFPDDTPCEYLM----KLFNLPYEKSRRQ----LGMFGLPSYAH 447
Q +G +LFP T E +M ++ E++ +Q L GL AH
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH 131
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
P +LSGGQ+ RVA+A P +++ DEPT+ LD E
Sbjct: 132 HYP-SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170
|
Length = 240 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGEL----RKSPRLRIGKFD-----QHSGEHLFPD 415
V L+GP+G GK+T L ++ G G + R RL K D Q LFP+
Sbjct: 33 VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYA--LFPN 90
Query: 416 DTPCEYL-MKLFNLPYEKSRRQ------LGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468
T + + L N ++ L + GLP P + LSGGQ+ RVALA
Sbjct: 91 LTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-LSGGQQQRVALARAL 149
Query: 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQG--GV--ILVSHDE 510
+P +L+LDEP + LD + L I+ Q GV I+V+HD+
Sbjct: 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ 195
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-11
Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 44/196 (22%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD- 405
G +L+ ++ ++ +AL+G +G GK+T L + G + + R+ I D
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG----LTGRIAIADRDL 71
Query: 406 QHSGEH------------LFPDDTPCEYLMKLFNLPYEKSRRQ------------LGMFG 441
H+ H LFP + + F L ++++ L + G
Sbjct: 72 THAPPHKRGLALLFQNYALFPHLKVEDNVA--FGL---RAQKMPKADIAERVADALKLVG 126
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-------IESIDALAE 494
L A +P LSGG + R+A+A PD+L+LDEP + LD E I AL E
Sbjct: 127 LGDAAAHLP-AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185
Query: 495 AIKNYQGGVILVSHDE 510
+ ++ V+HD+
Sbjct: 186 ELPELT--ILCVTHDQ 199
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 6e-11
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 358 GLDMESR----VALVGPNGIGKSTFL---NLLK---------GELTPNKGELRKSPRLRI 401
G+D+E + VA++GP+G GK+T L NLL+ G++T + + I
Sbjct: 21 GIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80
Query: 402 GKFDQHSGE-----HLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHT 448
+ QH G +LFP T E +++ + P E ++R L GL +
Sbjct: 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS 140
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQG 501
P R LSGGQ+ RVA+A P++++ DEPT+ LD E +I LA+ +
Sbjct: 141 YP-RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRT--- 196
Query: 502 GVILVSHDERLIRE 515
+++V+H+ R+
Sbjct: 197 -MVIVTHEMSFARD 209
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 6e-11
Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 25/199 (12%)
Query: 334 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ +V+F Y L+ V+F + ++VG NG GKST L+ G GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 393 L--RKSP---------RLRIGKFDQHSGEHLFPDDT---PCEYLMKLFNLPYEKSRRQ-- 436
+ R IG Q+ ++ F + ++ +PY++ R+
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNP-DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L + A P LSGGQK RVA+A + NP ++ILDE T+ LD ++ L +
Sbjct: 125 EALKQVDMLERADYEP-NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLD 183
Query: 495 AIKNYQGG----VILVSHD 509
++ + +I ++HD
Sbjct: 184 LVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 27/176 (15%)
Query: 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPR---LRIGKFDQHSGE 410
D + L+GPNG GK+T L + G + P KG ++ SP IG Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQ---R 57
Query: 411 HLFPDDTPCEY----------LMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSG 456
H F D P + P + R L GL A P+ +LSG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-PVGELSG 116
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG---GVILVSHD 509
GQ+ RV +A P +L+LDEP LD+ + + L E G +++ +HD
Sbjct: 117 GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 8e-11
Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 28/234 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDME----SRVALVGPNGIGKSTFLNLLKGELTPNK 390
++ V + Y + F +D+E S AL+G G GKST L L G L P +
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 391 GELR---------------KSPRLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLPYEKS 433
G++ K R ++G Q LF + + + F +P EK+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 434 RR----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
+ +L M GL +LSGGQ RVA+A + P++L+LDEPT LD ++
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 489 --IDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540
+ L E+I V+LV+H + + ++ LEK +I D ++E
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 8e-11
Identities = 50/165 (30%), Positives = 67/165 (40%), Gaps = 35/165 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G V L+ V+ + VAL+GP+G GK+T L L+ G P+ G + +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 399 LR-IGKFDQHSGEHLFPDDT-----------------PCEYLMKLFNLPYEKSRRQLGMF 440
R +G QH LF T P E ++ K L +
Sbjct: 73 ERNVGFVFQHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIR------AKVHELLKLV 124
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L A P LSGGQ+ RVALA P +L+LDEP LD
Sbjct: 125 QLDWLADRYP-AQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-11
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 40/213 (18%)
Query: 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------------- 382
DVT + G +L+ +NF + +VAL+GP+G GKST L +L
Sbjct: 4 SDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGE 62
Query: 383 --------KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD----DTPCEYLMKLFNLPY 430
G L P + + R +IG Q +LFP D E + + +
Sbjct: 63 QLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 431 EKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++ ++ L M GL A +P + LSGGQ+ RVA+A P +++ DE T+ LD
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQ-LSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
Query: 487 ESIDALAEAIKN----YQGGVILVSHDERLIRE 515
E + + I+ + ++LV+H+ RE
Sbjct: 180 ELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE 212
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------RKSP-- 397
G + V+F + L+GPNG GK+T + +L L P G + P
Sbjct: 11 GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPRE 70
Query: 398 -RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 449
R RIG Q + + T E L +L+ +P + R + L GL A +
Sbjct: 71 VRRRIGIVFQDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL 128
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
++ SGG + R+ +A ++ P++L LDEPT LD ++ + E I+
Sbjct: 129 -VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 60/204 (29%), Positives = 83/204 (40%), Gaps = 41/204 (20%)
Query: 340 DVTFGY----PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
V Y P + L VN + S VA++G G GKST L L G L P G +
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYE-- 431
K R ++G Q LF E + K F + E
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-----ETVEKDICFGPMNFGVSEEDA 121
Query: 432 --KSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--- 485
K+R + + GLP P +LSGGQ RVA+A + P++L+LDEPT LD
Sbjct: 122 KQKAREMIELVGLPEELLARSPF-ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180
Query: 486 -IESIDALAEAIKNYQGGVILVSH 508
E ++ + K +LV+H
Sbjct: 181 RKEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 60/259 (23%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGE------------ 392
GK +L+ ++F ++ + ++G +G GKS +++L+G + P G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 393 --------------------------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE 420
LR+ R RI Q + L+ DDT +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA-LYGDDTVLD 129
Query: 421 YLMK-LFNLPYEKSR---RQLGMFGLPSYAHTIP--IRDLSGGQKARVALAELTLNNPDI 474
+++ L + YE R + + + +H I RDLSGG+K RV LA P +
Sbjct: 130 NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 475 LILDEPTNNLDIESI----DALAEAIKNYQGGVILVSHDERLIRE-TDCELWALEKKNIR 529
+ DEPT LD ++ +AL EA+K ++L SH +I + +D +W LE I+
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW-LENGEIK 248
Query: 530 KFNGDFDDYREKLLTSLGE 548
+ G D+ + + E
Sbjct: 249 E-EGTPDEVVAVFMEGVSE 266
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 334 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
+L L D+ YP G+ +L+ ++ + VA+VG +G GKST +N+L P
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 391 GELRKS------------PRLRIGKFDQHSG-----EHLFPDDT-------PCEYLMKLF 426
G R + +LR +H G HL T P Y
Sbjct: 63 GTYRVAGQDVATLDADALAQLR----REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER 118
Query: 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+++ L GL P LSGGQ+ RV++A +N +++ DEPT LD
Sbjct: 119 KQRLLRAQELLQRLGLEDRVEYQP-SQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 487 ESIDALAEAIK--NYQG-GVILVSHD-------ERLIRETDCEL 520
S + + + +G VI+V+HD ER+I D E+
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221
|
Length = 648 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 49/181 (27%), Positives = 68/181 (37%), Gaps = 52/181 (28%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
V FG +L+ V+ + S V LVGPNG GK+T L + G LTP G +
Sbjct: 10 SVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGT------V 60
Query: 400 RIGKFDQHS------GEHL--FPDDTPCEYLMKLFNLPYEKSRRQ---------LGMFGL 442
+ D + + P DT +L +E RQ F
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDT---------SLSFEFDVRQVVEMGRTPHRSRFDT 111
Query: 443 PSYAHTI-----------------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ P+ LSGG++ RV LA +L+LDEPT +LD
Sbjct: 112 WTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
Query: 486 I 486
I
Sbjct: 172 I 172
|
Length = 402 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 70/216 (32%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
+L D+ F Y VL + +N + LVG NG GKST L G L P KG
Sbjct: 1 MLATSDLWFRYQDEPVL-KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59
Query: 393 -----LRKSPR----LR--IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRR--- 435
L S R LR + Q + +F D + L NL E +RR
Sbjct: 60 WQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDE 119
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
L + + H PI+ LS GQK RVA+A + L+LDEPT LD +
Sbjct: 120 ALTLVDAQHFRHQ-PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 496 IKNY--QGG-VILVSHDERLIRETDCELWALEKKNI 528
I+ QG VI+ SHD LI E ++ L + I
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 52/186 (27%), Positives = 79/186 (42%), Gaps = 44/186 (23%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL------------RKSPRLR------IGKFDQHS 408
+VG +G GK+T ++ G L P GE+ + P R IG Q
Sbjct: 315 IVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374
Query: 409 GEHLFPDDTPCEYLMKL--FNLPYEKSRRQ----LGMFG---------LPSYAHTIPIRD 453
L+P T + L + LP E +R + L M G L Y
Sbjct: 375 D--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE----- 427
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 509
LS G++ RVALA++ + P I+ILDEPT +D + + +I + + I+VSHD
Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487
Query: 510 ERLIRE 515
+ +
Sbjct: 488 MDFVLD 493
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 53/213 (24%)
Query: 341 VTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----------- 388
VTF Y P G ++L+ V+ ++ VA+VGP+G GKST L LL G TP
Sbjct: 457 VTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516
Query: 389 ----NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN-------LPYEKSRRQL 437
+ +R+ ++G Q+ L +F L +++
Sbjct: 517 LAGLDVQAVRR----QLGVVLQNG--RLMSGS--------IFENIAGGAPLTLDEAWEAA 562
Query: 438 GMFGL-------PSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
M GL P HT+ I + LSGGQ+ R+ +A + P IL+ DE T+ LD
Sbjct: 563 RMAGLAEDIRAMPMGMHTV-ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 487 ESIDALAEAIKNYQGGVILVSHDERL--IRETD 517
+ ++E+++ + I+++H RL IR D
Sbjct: 622 RTQAIVSESLERLKVTRIVIAH--RLSTIRNAD 652
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 3e-10
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 29/169 (17%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKG---------------ELRKSPRLRIGKFDQHSGEH 411
++G +G GKST + LL + P +G ELR+ R +I Q
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA-- 116
Query: 412 LFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVAL 464
L P T + + M+L + E+ R + L GL +YAH+ P +LSGG + RV L
Sbjct: 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-DELSGGMRQRVGL 175
Query: 465 AELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHD 509
A NPDIL++DE + LD E D L + +Q ++ +SHD
Sbjct: 176 ARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 53/205 (25%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------------ 394
GG + + VN + + V+L+GPNG GK+T N L G P G +
Sbjct: 16 GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-------------KLFNLP-YEKSRRQ---- 436
+ R+ + + QH LF + T E L+ L P + ++ +
Sbjct: 76 QIARMGVVRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDR 133
Query: 437 ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L GL +A+ +L+ GQ+ R+ +A + P+IL+LDEP L+ + L
Sbjct: 134 AATWLERVGLLEHANR-QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 493 AEAI----KNYQGGVILVSHDERLI 513
E I + V+L+ HD +L+
Sbjct: 193 DELIAELRNEHNVTVLLIEHDMKLV 217
|
Length = 255 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 53/187 (28%), Positives = 68/187 (36%), Gaps = 59/187 (31%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ LVGPNGIGKST L +L G+L PN G+ P D+ G L Y K
Sbjct: 29 LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWD-EILDEFRGSELQ------NYFTK 81
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIP---------------------------------- 450
L + + P Y IP
Sbjct: 82 LLEGDVKVIVK-------PQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD 134
Query: 451 --IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI------KNYQGG 502
I LSGG+ RVA+A + D DEP++ LDI+ A I NY
Sbjct: 135 RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY--- 191
Query: 503 VILVSHD 509
V++V HD
Sbjct: 192 VLVVEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 6e-10
Identities = 45/231 (19%), Positives = 81/231 (35%), Gaps = 79/231 (34%)
Query: 61 KVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
+++N S S + +L I G +VGPNG GK+TLLR + L P+S ++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLN--GLLGPTSGEV 58
Query: 119 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESG------DNQLRLTEVYDEL 172
L +++ LKE + + G D+Q V +E+
Sbjct: 59 LVDGKDLTKLS-----------------LKELRR----KVGLVFQNPDDQFFGPTVEEEV 97
Query: 173 K------SIEADAAEPRARRILAGLGF----------------------------TTIYI 198
+ + E R L +G I +
Sbjct: 98 AFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157
Query: 199 ---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLD 235
P++ + E+++ K KT+++V+HD L + +I L+
Sbjct: 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLE 208
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 56/229 (24%), Positives = 90/229 (39%), Gaps = 57/229 (24%)
Query: 334 PVLGLHD--VTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
P+L + + V F GG V ++ ++F ++ +ALVG +G GKS + G L P+
Sbjct: 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG-LLPSP 63
Query: 391 GELRKSPRLRIGKFDQHSGEHLFPDDTPC-------------------------EYLMKL 425
S + FD + + L ++
Sbjct: 64 AAAHPSGSIL---FDGEDLLAA-SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 426 FNLPYEKSRRQ--------LGMFGLP-------SYAHTIPIRDLSGGQKARVALAELTLN 470
L SR L + G+P +Y H +LSGGQ+ RV +A N
Sbjct: 120 LRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH-----ELSGGQRQRVMIAMALAN 174
Query: 471 NPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSHDERLIRE 515
PD+LI DEPT LD + +D L E ++ ++HD ++R+
Sbjct: 175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK 223
|
Length = 534 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 56/192 (29%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR------------KSPRLRIGKFDQHSGE-- 410
+AL+G +G GKST L +L G + GE+ +LR +H G
Sbjct: 39 IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRA----KHVGFVF 94
Query: 411 ---HLFPDDTPCE--YLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
L P E L L + R L GL +P + LSGG++
Sbjct: 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ-LSGGEQQ 153
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERL---- 512
RVALA PD+L DEPT NLD ++ D +A+ + + + +ILV+HD +L
Sbjct: 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARC 213
Query: 513 ---IRETDCELW 521
+R + +L
Sbjct: 214 DRRLRLVNGQLQ 225
|
Length = 228 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 7e-10
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 49/149 (32%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGPNG GK+T + +L G+L PN + +
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDND-EWDGITPV---------------------- 64
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
Y+ P Y DLSGG+ RVA+A L N + DEP+ L
Sbjct: 65 -----YK-----------PQYI------DLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102
Query: 485 DIESIDALAEAIKNY----QGGVILVSHD 509
DIE A AI+ + ++V HD
Sbjct: 103 DIEQRLNAARAIRRLSEEGKKTALVVEHD 131
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 24/195 (12%)
Query: 338 LHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ ++TF Y K L V+F + ++++G NG GKST + L+ G L G++
Sbjct: 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66
Query: 396 SP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYE--KSRRQ--LG 438
R +IG Q+ + L N +P+E K R L
Sbjct: 67 DGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALE 126
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+ G+ + P R LSGGQK RVA+A P I+ILDE T+ LD E L + IK
Sbjct: 127 LVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 499 ----YQGGVILVSHD 509
YQ VI ++HD
Sbjct: 186 IRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 1e-09
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+V N S + +L + G YGL+GPNG GKTTL++ I L P S
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDS 54
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 40/219 (18%)
Query: 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------- 393
FG +L V+ ++ V L+G +G GKST LL G P +G +
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77
Query: 394 -----RKSPRLRIGKFDQHSGEHLFPDDT-------PCEYLMKLFNLPYEKSRRQ----- 436
R++ R + Q S + P T P +L L ++S ++
Sbjct: 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSL-----DESEQKARIAE 132
Query: 437 -LGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDA 491
L M GL S A +P R LSGGQ R+ +A P +++LDE +NLD+ I
Sbjct: 133 LLDMVGLRSEDADKLP-RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191
Query: 492 LAEAIKNYQGGV--ILVSHDERLIRETDCELWALEKKNI 528
L ++ G + ++HD RL++ + ++K I
Sbjct: 192 LLRKLQQ-AFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 37/162 (22%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------------- 394
++ V+F L +A++G NG GKST +L G + P GE+
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 395 -----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
+PRLRIG+ L D P + ++F + R +G+ LP
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQI-LDFPLRLNTDLEPEQRRKQIFE-----TLRMVGL--LP 140
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+A+ P L+ GQK RVALA + P I+I DE +LD
Sbjct: 141 DHANYYP-HMLAPGQKQRVALARALILRPKIIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 57/196 (29%), Positives = 85/196 (43%), Gaps = 43/196 (21%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------- 392
+++ P GK+ A++GP+GIGK+T L L+ G++ P+ GE
Sbjct: 25 NISLTVPRGKI--------------TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGEN 70
Query: 393 ---LRKS----PRLRIGKFDQHSGEHLFPDDTPCEY----LMKLFNLPYEKSRRQLGM-- 439
+ +S R R+ Q SG LF D + L + LP + M
Sbjct: 71 IPAMSRSRLYTVRKRMSMLFQ-SGA-LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKL 128
Query: 440 --FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
GL A +P +LSGG R ALA PD+++ DEP D ++ L + I
Sbjct: 129 EAVGLRGAAKLMP-SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLIS 187
Query: 498 --NYQGGV--ILVSHD 509
N GV ++VSHD
Sbjct: 188 ELNSALGVTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 340 DVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK--- 395
V+F YP K L ++F + S AL+G NG GKST L+ G L P+ K
Sbjct: 10 HVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITV 69
Query: 396 -----------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKS----RRQLG 438
R ++G Q+ + L N +P + R L
Sbjct: 70 DGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLA 129
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
G+ Y + P +LSGGQK RVA+A + P I+ILDE T+ LD + + + I+
Sbjct: 130 DVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRK 188
Query: 499 YQG----GVILVSHD 509
+ VI ++HD
Sbjct: 189 LKKKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 51/177 (28%), Positives = 69/177 (38%), Gaps = 34/177 (19%)
Query: 325 FPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK 383
FP P P L L +VTF Y + +N + + L+G NG GKST LL
Sbjct: 311 FPRPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370
Query: 384 GELTPNKGELRKSPRL----RIGKFDQH-----SGEHLF-----PDDTPCEYLMKLFNLP 429
G P GE+ + + + + + HLF P+ P
Sbjct: 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN------PAL 424
Query: 430 YEKSRRQLGMFGLPSYAHTIPIRD-------LSGGQKARVALAELTLNNPDILILDE 479
EK +L M AH + + D LS GQK R+AL DIL+LDE
Sbjct: 425 VEKWLERLKM------AHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 60/203 (29%), Positives = 83/203 (40%), Gaps = 28/203 (13%)
Query: 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---- 394
H G + +L V+ L VAL+G +G GKST LL G +P++G +
Sbjct: 15 HGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74
Query: 395 ---KSPRLRIGKFD-------QHSGEHLFPDDTPC----EYLMKLFNL-PYEKSRRQLGM 439
K R + F Q S + P T E L L +L E+ R M
Sbjct: 75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEM 134
Query: 440 F---GL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDA 491
L S P LSGGQ RV LA P +LILDE +NLD+ I
Sbjct: 135 LRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 492 LAEAIKNYQGGVILVSHDERLIR 514
L + + + + ++HD RL+
Sbjct: 194 LKKLQQQFGTACLFITHDLRLVE 216
|
Length = 268 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 41/203 (20%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN-------- 389
++ Y G K L+ +N + AL+GP+G GKST L L +L P
Sbjct: 6 NLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVL 64
Query: 390 -KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------------- 430
G+ ++ + + + G +F P + M ++ N+ Y
Sbjct: 65 FDGQDIYDKKIDVVELRRRVG-MVFQKPNP--FPMSIYDNIAYGPRLHGIKDKKELDEIV 121
Query: 431 EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
E+S ++ ++ + H + LSGGQ+ R+ +A P++L+LDEPT+ LD +
Sbjct: 122 EESLKKAALWDEVKDRLHDSALG-LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180
Query: 490 DALAEAI----KNYQGGVILVSH 508
+ E I K Y +++V+H
Sbjct: 181 GKIEELIQELKKKYT--IVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-09
Identities = 51/187 (27%), Positives = 78/187 (41%), Gaps = 37/187 (19%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH--------LFPDDTP 418
LVGPNG GKST L + G +T G ++ + G+ + L TP
Sbjct: 30 LVGPNGAGKSTLLARMAG-MTSGSGSIQFA-----GQPLEAWSATELARHRAYLSQQQTP 83
Query: 419 CEYLMKLFN-----LPYEKSRRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469
+ M +++ P + L G L LSGG+ RV LA + L
Sbjct: 84 -PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS-TNQLSGGEWQRVRLAAVVL 141
Query: 470 N-----NPD--ILILDEPTNNLDI---ESIDALAEAIKNYQGGVILVSHD-ERLIRETDC 518
NP +L+LDEP N+LD+ ++D L A+ +++ SHD +R
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAH- 200
Query: 519 ELWALEK 525
W L++
Sbjct: 201 RAWLLKR 207
|
Length = 248 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 34/199 (17%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNK 390
+ +V+ Y G KV+L+ V+ + +++GPNG GKST L+++ GE+T +
Sbjct: 4 IENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG 62
Query: 391 GELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-----RQLGM 439
EL +P +L I K + H L D L+ PY + R R++ +
Sbjct: 63 LELTSTPSKELAKKLSILKQENHINSRLTVRD-----LVGFGRFPYSQGRLTKEDRRI-I 116
Query: 440 FGLPSYAHTIPIRD-----LSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESID 490
Y H + D LSGGQ+ R +A + + D ++LDEP NNLD+ + +
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 491 ALAEAIKNYQGGVILVSHD 509
L +++V HD
Sbjct: 177 ILRRLADELGKTIVVVLHD 195
|
Length = 252 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 24/171 (14%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P++ L ++ + GK ++ ++ ++ + L+GP+G GK+T L L+ G TP+ G
Sbjct: 12 SPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 393 LRKSPRLRIGKFDQHSGEH-----------LFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
+ L E+ LFP T E + +++ P + +
Sbjct: 71 IM----LDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVM 126
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L M L +A P LSGGQ+ RVA+A +N P +L+LDE + LD
Sbjct: 127 EALRMVQLEEFAQRKP-HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 60/210 (28%), Positives = 88/210 (41%), Gaps = 40/210 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ +V+F Y ++L+ +N L + SR VALVG G GKST +LL G +GE+R
Sbjct: 343 IDNVSFAYRDDNLVLQNIN--LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400
Query: 396 SPR---------LRIGKFDQHSGEHLFPDDTPCEYLMKLF-------NLPYEKSRRQLGM 439
R LR G + D P ++ E+ + L
Sbjct: 401 DGRPLSSLSHSVLR-------QGVAMVQQD-PVVLADTFLANVTLGRDISEEQVWQALET 452
Query: 440 FGLPSYAHTIP--IRDLSGGQ--------KARVALAELTLNNPDILILDEPTNNLDIESI 489
L A ++P + G Q K +ALA + + P ILILDE T N+D +
Sbjct: 453 VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512
Query: 490 DALAEAIKNYQGGVILVSHDERL--IRETD 517
A+ +A+ + LV RL I E D
Sbjct: 513 QAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
|
Length = 592 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 62/240 (25%), Positives = 84/240 (35%), Gaps = 49/240 (20%)
Query: 297 ARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPP-PVLGLHDVTFGYPGGKVLLEKV 355
A ++ K + K FP P P L L +V F Y + +
Sbjct: 295 AFNKIAKLELAPYKAD------------FPRPQAFPDWKTLELRNVRFAYQDNAFHVGPI 342
Query: 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLRIGKFDQ- 406
N + V L+G NG GKST LL G P GE+ + F
Sbjct: 343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAV 402
Query: 407 HSGEHLFPDDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAHTIPIRD-------LS 455
S HLF L+ EK ++L + AH + D LS
Sbjct: 403 FSDYHLFDQ------LLGPEGKASPQLIEKWLQRLEL------AHKTSLNDGRFSNLKLS 450
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDER 511
GQK R+AL L DIL+LDE + D E L +K + +SHD+
Sbjct: 451 TGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
|
Length = 546 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 7e-09
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+VEN S+ G + + +L I +G G++GPNG GK+TLL+ +A
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-09
Identities = 53/159 (33%), Positives = 68/159 (42%), Gaps = 39/159 (24%)
Query: 356 NFGLDMES--RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRL-----RIGKF 404
+ LD+ S VAL+GP+G GK+T L ++ G G +R RL ++G
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79
Query: 405 DQHSGEHLFPDDTPCEYLMKLFN--------LPY----------EKSRRQLGMFGLPSYA 446
QH LF M +F+ LP K + L M L A
Sbjct: 80 FQHYA--LFRH-------MTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
P + LSGGQK RVALA P IL+LDEP LD
Sbjct: 131 DRYPAQ-LSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 28/192 (14%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP-- 397
G + ++ V+ + V L+GPNG GK+T ++ G + P+ G++ K P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAH 447
RL IG Q + +F T E ++ ++ L ++ + L F +
Sbjct: 71 KRARLGIGYLPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK 128
Query: 448 TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVI 504
+ LSGG++ RV +A NP L+LDEP +D ++ I + + +K+ GV+
Sbjct: 129 SKASS-LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 505 LVSHDERLIRET 516
+ H+ +RET
Sbjct: 188 ITDHN---VRET 196
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------- 398
P G VL+E ++F + + + + GPNG GKS+ +L GEL P G P
Sbjct: 462 PNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL-GELWPVYGGRLTKPAKGKLFYV 520
Query: 399 -----LRIGKF-DQHSGEHLFPD-----------DTPCEYLMKLFNLPYEKSRRQLGMFG 441
+ +G DQ ++PD D E ++ L + R G
Sbjct: 521 PQRPYMTLGTLRDQI----IYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREG----G 572
Query: 442 LPSYAHTIPIRD----LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
+ ++D LSGG+K R+A+A L + P ILDE T+ + ++ + +
Sbjct: 573 WSA------VQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626
Query: 498 NYQGGVILVSHDERLIR 514
+ + VSH + L +
Sbjct: 627 EFGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 46/226 (20%), Positives = 81/226 (35%), Gaps = 66/226 (29%)
Query: 60 IKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I+ EN S + +L+I G R L+GPNG GK+TLL+ + L P+S
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN--GLLKPTS--- 58
Query: 119 LYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL------ 172
EV + S++K+ ++L ++ + ++ D+QL V DE+
Sbjct: 59 ----GEVLVDG-----LDTSSEKSLLELRQKVGLVFQN--PDDQLFGPTVEDEVAFGLEN 107
Query: 173 KSIEADAAEPRARRILAGLGFT------------------------------------TI 196
+ + E R L +G T
Sbjct: 108 LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 197 YIPSSRVHEIMRTWKK-------TLLVVSHDQSFLNNICTDIIHLD 235
+ E++ KK T+++V+HD + ++ LD
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 53/202 (26%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N S + ++ +L I +G L+GP+G GK+TLLR IA L P S +L
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIA--GLEEPDSGSIL 58
Query: 120 YCEQEVEASDD------SAVNIV---------LSADKNRVKLLKECSKLERDESGDNQLR 164
+++ +D + +V L+ +N L SG Q R
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL----------SGGQQQR 108
Query: 165 LT---------EV--YDELKSIEADAAEPRARRILAGLGFTTIYIPSSRVHEIMRTWKKT 213
+ +V DE S A +P RR + L + + T
Sbjct: 109 VALARALAMDPDVLLLDEPTS----ALDPITRREVRAL-----------LKSLQAQLGIT 153
Query: 214 LLVVSHDQSFLNNICTDIIHLD 235
+++V+HD + ++ L
Sbjct: 154 VVLVTHDLDEAARLADRVVVLR 175
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-08
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---RKSPRLRIGKFD 405
+ LL++++F L + L G NG GK+T L L+ G L P KGE+ R+S + + +
Sbjct: 14 QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQ 73
Query: 406 QH-------SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG-MFGLPSYAHTI--PIRDLS 455
+ SG + P T E L+++ + + + L S H I P LS
Sbjct: 74 KQLCFVGHRSG--INPYLTLRENC--LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLS 129
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERL 512
GQK +VAL L ++ + +LDEP LD S+ + I+ ++ G V+L SH +
Sbjct: 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP 189
Query: 513 IRETDCELWAL 523
+ + D E + L
Sbjct: 190 LNKADYEEYHL 200
|
Length = 200 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
L +V+F PG + LL ++ L+G NG GKST L +L
Sbjct: 3 EYTNHSDTTFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61
Query: 387 TPNKGE--LRKSPRLRIGKFDQHSGEH---LFPDDTPCEYLMKLFNL------PY----- 430
P++GE L P + + + P P M + L P+
Sbjct: 62 PPSEGEILLDAQP---LESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG 118
Query: 431 -------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
EK + + GL AH + + LSGG++ R +A L + L+LDEPT+
Sbjct: 119 RFGAADREKVEEAISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 484 LDI-ESIDALA--EAIKNYQG-GVILVSHD 509
LDI +D LA + +G VI V HD
Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHD 207
|
Length = 265 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 32/205 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P + ++T G+ GK +L++V+ G + +L+GP G GK+TFL L +
Sbjct: 20 PAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN-RMNDKVSGY 77
Query: 394 RKSPRLRIG-----------KFDQHSGEHLF--PDDTPCEYL------MKLFNLPYEKSR 434
R S + +G +F + G LF P+ P + ++ L K
Sbjct: 78 RYSGDVLLGGRSIFNYRDVLEFRRRVG-MLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEF 136
Query: 435 RQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
R + L ++D LSGGQ+ + LA NP++L+LDEPT+ LD
Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196
Query: 487 ESIDALAEAIKNYQG--GVILVSHD 509
+ + + E I++ VI+V+H+
Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHN 221
|
Length = 276 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-------RIGKF 404
L+ VN + ++L+G +G GKST LNL+ G P G + + R+ F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 405 DQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRR----QLGMFGLPSYAHTIPIRDLS 455
+S L P T E + + L + R + + GL A LS
Sbjct: 61 QNYS---LLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-RPGQLS 116
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHD 509
GG K RVA+A P +L+LDEP LD + L E + ++ V++V+HD
Sbjct: 117 GGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 38/159 (23%), Positives = 52/159 (32%), Gaps = 42/159 (26%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425
+ GPNG GKST L+ + R + +G
Sbjct: 25 IITGPNGSGKSTILDAIG------LALGGAQSATRRRSGVK-AGC--------------- 62
Query: 426 FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA----ELTLNNPDILILDEPT 481
+ + L SGG+K ALA +L + ILDE
Sbjct: 63 -IVAAVSAELIFTRLQL------------SGGEKELSALALILALASLKPRPLYILDEID 109
Query: 482 NNLDIESIDALAEAIK-NYQGG--VILVSHDERLIRETD 517
LD ALAEAI + G VI+++H L D
Sbjct: 110 RGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 55/225 (24%), Positives = 89/225 (39%), Gaps = 74/225 (32%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-------------- 379
P + + D+ Y G K L+ +N + AL+GP+G GKST L
Sbjct: 6 PAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 380 ----------NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 428
N+ ++ ELR+ R+G Q + FP M ++ N+
Sbjct: 65 VEGEVLLDGKNIYDPKVDVV--ELRR----RVGMVFQKP--NPFP--------MSIYDNV 108
Query: 429 PY----------------EKSRRQLGMFG-----LPSYAHTIPIRDLSGGQKARVALAEL 467
Y E S ++ ++ L A LSGGQ+ R+ +A
Sbjct: 109 AYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALG-----LSGGQQQRLCIARA 163
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSH 508
P++L++DEPT+ LD S + E I K Y +++V+H
Sbjct: 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYT--IVIVTH 206
|
Length = 253 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413
VN L + A+ G +G GK++ +N + G P KG + + R+ FD G L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVL---FDAEKGICLP 72
Query: 414 PDDTPCEYLM---KLF-------NLPY---EKSRRQ----LGMFGLPSYAHTIPIRDLSG 456
P+ Y+ +LF NL Y + Q + + G+ P LSG
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGS-LSG 131
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDI 486
G+K RVA+ L P++L++DEP +LD+
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
Length = 352 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------- 393
+T GY G + E + + A++GPNG GKST L L +TP G +
Sbjct: 13 LTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71
Query: 394 ----RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE---------------KSR 434
K RIG Q++ P D + L+ P++ K+
Sbjct: 72 QHYASKEVARRIGLLAQNATT---PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDAL 492
+ G+ L + + LSGGQ+ R +A + I++LDEPT LDI ID L
Sbjct: 129 QATGITHLADQS----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLL 183
|
Length = 265 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S G + + + I G G++GPNG GK+TLL+ +A
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLA 49
|
Length = 258 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 33/155 (21%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410
+L+ ++F L+ +A+ G G GKS+ L ++ GEL P++G+++ HSG
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK------------HSGR 488
Query: 411 HLFPDDTPCEYLMK-------LFNLPYEKSRRQ--LGMFGLPSYAHTIPIRD-------- 453
F T ++M +F L Y++ R + L P +D
Sbjct: 489 ISFSPQTS--WIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 454 --LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P +LD+
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 36/203 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P+L + ++T + G+ ++ V+ + AL+G +G GKST L +L G P G++
Sbjct: 18 PLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 394 --------RKSPRLR-IGKFDQHSGEHLFPDDT---PCEYLMKLFNLPY-EKSRR---QL 437
P R I Q LFP T + +K LP E + R L
Sbjct: 77 MLDGVDLSHVPPYQRPINMMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--------IESI 489
G+ + +A P LSGGQ+ RVALA P +L+LDEP LD +E +
Sbjct: 135 GLVHMQEFAKRKP-HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVV 193
Query: 490 DALAEAIKNYQGGV--ILVSHDE 510
D L GV ++V+HD+
Sbjct: 194 DILERV------GVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVG 369
E+ E+ E V F + L L++V+F YP +L+ ++ + +VAL+G
Sbjct: 316 EITEQKPE--VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLG 373
Query: 370 PNGIGKSTFLNLLKGELTPNKGELR 394
G GKST L LL P +GE+
Sbjct: 374 RTGCGKSTLLQLLTRAWDPQQGEIL 398
|
Length = 574 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 3e-08
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 33/149 (22%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK 424
+ +VGP G GK+T L EL P G +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGG------------------------------VI 34
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
+ + + L SG + R+ALA PD+LILDE T+ L
Sbjct: 35 YIDGE---DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLL 91
Query: 485 DIESIDALAEAIKNYQGGVILVSHDERLI 513
D E L + ++ + +I
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVI 120
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 53/201 (26%), Positives = 79/201 (39%), Gaps = 38/201 (18%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELR---------------------------KSPRL 399
++G +G GKST + G + G ++ K R
Sbjct: 57 IIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRR 116
Query: 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR-RQLGMFGL------PSYAHTIPIR 452
R+ Q LF D + + L +KS ++L F L SY P
Sbjct: 117 RVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF- 175
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHD 509
LSGGQK RVA+A + P+ILI DEPT LD + + + I K V +++H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 510 ERLIRETDCELWALEKKNIRK 530
+ E E+ ++K I K
Sbjct: 236 MEHVLEVADEVIVMDKGKILK 256
|
Length = 320 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 54/195 (27%), Positives = 81/195 (41%), Gaps = 33/195 (16%)
Query: 347 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL----------- 393
GG L L+ V+ ++ VAL GP+G GKST L L P+ G +
Sbjct: 17 GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDL 76
Query: 394 -RKSPR----LR---IGKFDQHSGEHLFPDDTPCEYLMKLF-------NLPYEKSRRQLG 438
+ SPR +R IG Q + P + E + + ++R L
Sbjct: 77 AQASPREVLEVRRKTIGYVSQFL--RVIPRVSALEVVAEPLLERGVPREAARARARELLA 134
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
+P +P SGG++ RV +A + + IL+LDEPT +LD + + E I
Sbjct: 135 RLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 499 Y-QGGVILVS--HDE 510
G L+ HDE
Sbjct: 195 AKARGAALIGIFHDE 209
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 72/243 (29%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEK----------VNFGLDMESRVALVGPNGIGK 375
P P P +L + D+ +P L + ++ L + LVG +G GK
Sbjct: 267 PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326
Query: 376 STF-LNLLKGELTPNKGELR-------------------------------KSPRLRIGK 403
ST L LL+ L P++GE+R SPR+ +G
Sbjct: 327 STLGLALLR--LIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVG- 383
Query: 404 FDQHSGEHLF---PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----YAHTIPIRDLS 455
Q E L P + E ++ L GL Y H + S
Sbjct: 384 --QIIEEGLRVHEPKLSAAERD--------QRVIEALEEVGLDPATRNRYPH-----EFS 428
Query: 456 GGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDER 511
GGQ+ R+A+A + P++++LDEPT+ LD + +D L + + + + +SHD
Sbjct: 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488
Query: 512 LIR 514
++R
Sbjct: 489 VVR 491
|
Length = 534 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-08
Identities = 40/147 (27%), Positives = 57/147 (38%), Gaps = 42/147 (28%)
Query: 365 VALVGPNGIGKSTFLNLL---------KGELTPNKGELRKSPRLRIG---KFDQHSGEHL 412
AL+G +G GK+T L++L GE+ N L K+ + G + D HS
Sbjct: 36 TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNL- 94
Query: 413 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTLNN 471
T E L L R LS Q+ R+ + EL
Sbjct: 95 ----TVREALRFSALL-----------------------RGLSVEQRKRLTIGVELA-AK 126
Query: 472 PDILILDEPTNNLDIESIDALAEAIKN 498
P IL LDEPT+ LD ++ + +K
Sbjct: 127 PSILFLDEPTSGLDSQAAYNIVRFLKK 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 4e-08
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN- 389
+L DV Y G K ++ VN + + AL+GP+G GK+TFL + +LTP
Sbjct: 2 TLLLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGA 60
Query: 390 --------KGELRKSPRL-------RIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
G+ PR+ R+G Q FP + + ++ L + R
Sbjct: 61 RVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP--FPTMSVFDNVVAGLKLAGIRDR 118
Query: 435 RQL------GMFGLPSYAH-----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L + G + P LSGGQ+ R+ +A P+IL++DEPT+
Sbjct: 119 DHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178
Query: 484 LDIESIDALAEAIKNYQG--GVILVSHD 509
LD S + + + + + +I+V+H+
Sbjct: 179 LDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
PP+L ++ Y G +VL + ++F L AL+G NG GKST + ++ G + P+ G
Sbjct: 8 APPLLCARSISKQYSGVEVL-KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66
Query: 392 ELR------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR----- 434
L K+ +L I Q LFP+ + E + LF LP ++
Sbjct: 67 TLEIGGNPCARLTPAKAHQLGIYLVPQEP--LLFPNLSVKENI--LFGLPKRQASMQKMK 122
Query: 435 ---RQLGM-FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
LG L S A ++ + D + V + + + ILILDEPT +L +
Sbjct: 123 QLLAALGCQLDLDSSAGSLEVAD-----RQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 491 ALAEAIKNYQG---GVILVSHDERLIRE 515
L I+ G++ +SH IR+
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQ 205
|
Length = 510 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 6e-08
Identities = 48/173 (27%), Positives = 66/173 (38%), Gaps = 48/173 (27%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRLRIGKFDQHSGEHLF-------- 413
A VG NG GKS L GEL GE + RL + Q +
Sbjct: 33 AFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL-QKLVSDEWQRNNTDML 91
Query: 414 ---PDDTP----------------CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDL 454
DDT CE L + F + RR + L
Sbjct: 92 SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR---------------FKYL 136
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-YQGGVILV 506
S G+ + L + ++ PD+LILDEP + LD+ S LAE + + +Q G+ LV
Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189
|
Length = 490 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
LSGGQK R+A+A + P +LILDE T+ LD E L E+ V+L++H +
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV 677
Query: 514 RETD 517
D
Sbjct: 678 ERAD 681
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 8e-08
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQGGVILVSHDER 511
LSGGQK RVA+A + NP +LILDE T+ LD ES + +A+ + V++++H
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210
Query: 512 LIRETD 517
+ D
Sbjct: 211 TVERAD 216
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
RQ+GM + + P R LSGGQK RVA+A + PDI+ILDE T+ LD + E
Sbjct: 126 RQVGM---EDFLNREPHR-LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLE 181
Query: 495 AIK--NYQGG--VILVSHD 509
++ Q G V+ ++HD
Sbjct: 182 TVRQLKEQKGITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
P+L + ++ Y G V+F L + +VG +G GK+T L + G LTP+ G
Sbjct: 3 DKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 392 --------------------ELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFN 427
E R+ R G Q+ + L + E LM +
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 428 LPYEKSRRQLGMFGL------PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
Y R L +P R SGG + R+ +A + P ++ +DEPT
Sbjct: 122 RHYGNI-RAEAQDWLEEVEIDLDRIDDLP-RTFSGGMQQRLQIARNLVTRPRLVFMDEPT 179
Query: 482 NNLDIES----IDALAEAIKNYQGGVILVSHDERLIR 514
LD+ +D L ++ V++V+HD + R
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
|
Length = 258 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 46/200 (23%)
Query: 365 VALVGPNGIGKSTFL---NLL----KGELTPNKGELRKSP-----------------RLR 400
++++G +G GKSTFL N L G + N E+R R R
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94
Query: 401 IGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIR 452
+G QH +L+ T E +++ + + E++ + L G+ A P
Sbjct: 95 LGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH 152
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGVIL 505
LSGGQ+ RVA+A P++++ DEPT+ LD E + LAE + +++
Sbjct: 153 -LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT----MVV 207
Query: 506 VSHDERLIRETDCELWALEK 525
V+H+ R+ + L +
Sbjct: 208 VTHEMGFARDVSSHVIFLHQ 227
|
Length = 256 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 9e-08
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 33/155 (21%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG-------- 402
+L+ +N ++ +A+ G G GK++ L L+ GEL P++G+++ S R+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 403 -----------KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
+D++ + + C+ + P EK LG G+
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVV---KACQLEEDITKFP-EKDNTVLGEGGI--------- 158
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 159 -TLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N S E+ + NL I G L+GP+G GK+TLLR IA L P+S ++L
Sbjct: 4 LELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIA--GLEEPTSGEIL 61
Query: 120 YCEQEV 125
++V
Sbjct: 62 IDGRDV 67
|
Length = 338 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A + NP ILI DE T+ LD ES + ++ G VI+++H
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS 653
Query: 512 LIRETDCELWALEKKNI 528
+R D + LEK I
Sbjct: 654 TVRACD-RIIVLEKGQI 669
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 56/219 (25%), Positives = 81/219 (36%), Gaps = 56/219 (25%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKST----FLNLLKGELTPNKGELR------------ 394
L++ +N L +ALVG +G GKS L LL LT GE+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 395 --------KSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
++PR +G H+ E L KL L
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMG---NHAIE-------TLRSLGKLSKQARALILEALEAV 110
Query: 441 GLP-------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESI 489
GLP Y LSGG RV +A L P LI DEPT +LD+ +
Sbjct: 111 GLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVL 165
Query: 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNI 528
L E + + G++L++HD ++ E+ ++ I
Sbjct: 166 KLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRI 204
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 35/182 (19%)
Query: 326 PNPPYLP-PPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
NPP P P + + + F + K L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 QNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAM 663
Query: 383 KGELTPN-------KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR- 434
GEL+ +G + P++ F+ E++ LF +E R
Sbjct: 664 LGELSHAETSSVVIRGSVAYVPQVS-WIFNATVRENI------------LFGSDFESERY 710
Query: 435 -RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNPDILILDEPTNN 483
R + + L +P RDL SGGQK RV++A +N DI I D+P +
Sbjct: 711 WRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
Query: 484 LD 485
LD
Sbjct: 771 LD 772
|
Length = 1495 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 52/192 (27%), Positives = 83/192 (43%), Gaps = 38/192 (19%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKST-------FLNLLKGELTPNK 390
L D +F PGG + ALVG NG GKST F+ L G+++
Sbjct: 23 LRDASFTVPGGSI--------------AALVGVNGSGKSTLFKALMGFVRLASGKISILG 68
Query: 391 GELRKSPRLRIGKFDQHSGE--HLFP---DDTPC--EY-LMKLFNLPYEKSRR----QLG 438
R++ + + + S E FP +D Y M ++ R+ L
Sbjct: 69 QPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALA 128
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEA 495
+ + H I +LSGGQK RV LA +++LDEP +D+++ I +L
Sbjct: 129 RVDMVEFRHR-QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
Query: 496 IKNYQGGVILVS 507
+++ +G +LVS
Sbjct: 188 LRD-EGKTMLVS 198
|
Length = 272 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-07
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 232 IHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHK 291
+ L+ KL YKGN++ + + ++ ++ K YE Q+K+I++++ R + K
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRF----RAKASK 56
Query: 292 ALKEQAR-KRVQKDDDDEPKELLEKPREYIVKFRF 325
A + Q+R K ++K E +EKP E K RF
Sbjct: 57 AKQAQSRIKALEK------MERIEKPVEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-07
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 43/219 (19%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
P+L + ++ Y GG V+F L + +VG +G GKST L L G L P+ G
Sbjct: 1 KPLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGT 59
Query: 393 ---------------LRKSPRLRIGKFD-----QHSGEHLFPDDTP----CEYLMKLFNL 428
L ++ R R+ + + Q+ + L + E LM +
Sbjct: 60 ATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119
Query: 429 PYEKSRRQLGMFGLPSYAHTIPI---------RDLSGGQKARVALAELTLNNPDILILDE 479
Y R + + I R SGG + R+ +A + P ++ +DE
Sbjct: 120 HYGNIRATAQ-----DWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 480 PTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIR 514
PT LD+ +D L +++ VI+V+HD + R
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 314 EKPREYI-VKFRFPNP-PYLPPPVLGL---HDVTFGYPG--GKVLLEKVNFGLDMESRVA 366
EK EY+ K P P + GL DV+F YP +L+ + F L VA
Sbjct: 452 EKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVA 511
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL 393
LVGP+G GKST LL+ P G++
Sbjct: 512 LVGPSGSGKSTVAALLQNLYQPTGGQV 538
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 44/205 (21%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG----ELTPN----KGE--LRKS 396
K +L+ VN + A++GPNG GKST + G E+T KG+ L
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 397 P--RLRIGKF--DQHSGEHLFPDDTPCEYL---------------MKLFNLPYEKSRRQL 437
P R R G F Q+ E P + E+L + L + + + +L
Sbjct: 71 PDERARAGLFLAFQYPEE--IPGVSNLEFLRSALNARRSARGEEPLDLLDF-LKLLKAKL 127
Query: 438 GMFGLP-SYAHTIPIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
+ G+ + + R + SGG+K R + ++ L P + ILDE + LDI+++ +
Sbjct: 128 ALLGMDEEFLN----RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIV 183
Query: 493 AEAIKNYQG---GVILVSHDERLIR 514
AE I + ++++H +RL+
Sbjct: 184 AEGINRLREPDRSFLIITHYQRLLN 208
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG----------ELRKSPRLR- 400
L V+ + VAL+GP+G GKST L L G +T +K +++ RL
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 401 -IGKFDQHSGEHLFPDDTPCEYLMKLFNL-------------------PYEKSR--RQLG 438
I K ++G ++F L L N+ +K R + L
Sbjct: 80 DIRKSRANTG-YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK- 497
G+ +AH + LSGGQ+ RVA+A + +++ DEP +LD ES + + ++
Sbjct: 139 RVGMVHFAHQ-RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 498 -NYQGGVILV 506
N G+ +V
Sbjct: 198 INQNDGITVV 207
|
Length = 262 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 53/205 (25%), Positives = 89/205 (43%), Gaps = 46/205 (22%)
Query: 340 DVTFGYPGG-----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+V++ Y K+ L+ VN + + ++G NG GKST + L P++G
Sbjct: 9 NVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG--- 65
Query: 395 KSPRLRIGKFDQHSGEHLF------------PDDTPCEYLMK---------LFNLPYEKS 433
++ + D E+L+ PD+ +++ L P E
Sbjct: 66 ---KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR 122
Query: 434 RR------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD-- 485
R ++GM+ +A + LSGGQK RVA+A + P+ +I DEPT LD
Sbjct: 123 ERVDESLKKVGMYEYRRHAPHL----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 486 --IESIDALAEAIKNYQGGVILVSH 508
E ++ + E K Y +IL++H
Sbjct: 179 GRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 54/206 (26%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-------ELRKSP-- 397
+ ++ V+ ++ V L+GPNG GK+T ++ G + P+ G ++ K P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 398 ---RLRIGKFDQHS---------------GEHLFPDDTP------CEYLMKLFNLPYEKS 433
RL IG Q + E D + L++ F++
Sbjct: 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI--THL 132
Query: 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESID 490
R LSGG++ RV +A NP ++LDEP +D + I
Sbjct: 133 RDSKAYS-------------LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQ 179
Query: 491 ALAEAIKNYQGGVILVSHDERLIRET 516
+ + +K+ GV++ H+ +RET
Sbjct: 180 RIIKHLKDRGIGVLITDHN---VRET 202
|
Length = 243 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+VEN ++S + + +L + G L+GPNG GK+TLL+ I
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAIL 51
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++ S + V + +L + G L+GP+G GKTTLLR IA L P S ++L
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA--GLERPDSGEIL 58
Query: 120 YCEQEV 125
++V
Sbjct: 59 IDGRDV 64
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGGQ+ R+A+A ++NP ILI DE T+ LD ES A+ + + G VI+++H
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 512 LIRETDCELWALEKKNI 528
++ D + +EK I
Sbjct: 199 TVKNAD-RIIVMEKGRI 214
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTF---LNL------- 381
V ++ + Y G L+ +N + A++GP+G GKSTF LNL
Sbjct: 9 KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN 67
Query: 382 --LKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY------EK 432
L GE+ N + K ++ + + ++ G +F P + +F N+ Y K
Sbjct: 68 VKLTGEMNYNGSNILKG-KVDLVELRKNIG-MVFQKGNP--FPQSIFDNVAYGPRIHGTK 123
Query: 433 SRRQLGMF---GLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPT 481
++++L L A ++D LSGGQ+ R+ +A NPD+L++DEPT
Sbjct: 124 NKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPT 183
Query: 482 NNLDIESIDALAEAI 496
+ LD S + E I
Sbjct: 184 SALDPVSTRKIEELI 198
|
Length = 259 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-07
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 53/196 (27%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESR----VALVGPNGIGKSTFLNLLKGELTP 388
PVL + ++ K + V+F + R V + G G G++ L G P
Sbjct: 2 EPVLEVRGLS-----VKGAVRDVSFEV----RAGEIVGIAGLVGNGQTELAEALFGLRPP 52
Query: 389 NKGEL--------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440
GE+ R+SPR I G P+D R++ G+
Sbjct: 53 ASGEITLDGKPVTRRSPRDAIRA-----GIAYVPED-----------------RKREGLV 90
Query: 441 -GLPSYAHTIPIRDLSGG--QKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAI 496
L + LSGG QK V LA L + P +LILDEPT +D+ + + I
Sbjct: 91 LDLSVAENIALSSLLSGGNQQK--VVLARWLARD-PRVLILDEPTRGVDVGAKAEIYRLI 147
Query: 497 KNY--QG-GVILVSHD 509
+ G V+L+S +
Sbjct: 148 RELADAGKAVLLISSE 163
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-07
Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 36/223 (16%)
Query: 321 VKFRFPNPPYLP-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
V R PP P VL + D++ G ++ V+F + V + G G G+S +
Sbjct: 242 VVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 380 NLLKGELTPNKGEL---------RKSPRLRIGK------FDQHSGEHLFPD--------- 415
+ G P G + R SPR R D+H G L D
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRH-GHGLVLDLSLAENLVL 360
Query: 416 ---DTPCEYLMKLFNLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTL 469
D + + +R + F + + + P R LSGG + ++ LA EL
Sbjct: 361 GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR 420
Query: 470 NNPDILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHD 509
PD+LI +PT LD+ +I+ + E + ++ V+L+S D
Sbjct: 421 R-PDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED 462
|
Length = 501 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 345 YPGGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKG-----------ELTP 388
+ G K + L V+ + ++G +G GKST + NLL+ +LT
Sbjct: 12 HQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71
Query: 389 NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
R +IG QH +L T + ++L N P ++ +R+ L + G
Sbjct: 72 LSNSELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVG 129
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NY 499
L + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++ E +K N
Sbjct: 130 LGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 500 QGG--VILVSHDERLIR 514
+ G ++L++H+ +++
Sbjct: 189 RLGLTILLITHEMDVVK 205
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 5e-07
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ N S+ G L + +L + G ++GPNG GK+TLLR ++
Sbjct: 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS 49
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S S G L +L + G ++GPNG GK+TLL+ +
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL 47
|
Length = 259 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 47/171 (27%), Positives = 69/171 (40%), Gaps = 30/171 (17%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L+ ++ + + V + G +G GKST +N L S + R+ F
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG----------LYASGKARLISFLPK---- 56
Query: 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA-ELTLN 470
++ +L L LG L T LSGG+ RV LA EL
Sbjct: 57 --FSRNKLIFIDQLQFL----IDVGLGYLTLGQKLST-----LSGGELQRVKLASELFSE 105
Query: 471 NPDIL-ILDEPTNNLDIESIDALAEAIK---NYQGGVILVSHDERLIRETD 517
P L ILDEP+ L + I+ L E IK + VIL+ H+ ++ D
Sbjct: 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSAD 156
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 7e-07
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+VE+ ++S G + + + ++ G +VGPNG GK+TLL+ I
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAIL 46
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 7e-07
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGE--------------LRKSPRLR--IGKFDQHSGE 410
++G G GKST + L G + G+ +++ RLR IG Q
Sbjct: 42 VIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101
Query: 411 HLFPDDTPCEYLMKLFNL------PYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVA 463
LF + + NL Y+K L + LP Y P +LSGGQK RVA
Sbjct: 102 QLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPF-ELSGGQKRRVA 160
Query: 464 LAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
LA + + + L+LDEPT LD + I+ K Y+ +I+V+H+
Sbjct: 161 LAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
|
Length = 289 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 23/184 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL--------RKSPR 398
G +++ +N + + V L+GP+G GK+T L L+ G P +G++ +S +
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 399 LR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIP 450
R I Q LFP + E Y +K+ +P E+ +++ L + L +
Sbjct: 77 QRDICMVFQSYA--LFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY- 133
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILV 506
+ +SGGQ+ RVALA + P +L+ DEP +NLD ++ E I+ Q + V
Sbjct: 134 VDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV 193
Query: 507 SHDE 510
+HD+
Sbjct: 194 THDQ 197
|
Length = 351 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-07
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 37/183 (20%)
Query: 326 PNPPYLPP-PVLGLHDVTFGY--PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
PNPP P P + + + F + + L +N + + S VA+VG G GK++ ++ +
Sbjct: 604 PNPPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAM 663
Query: 383 KGELTPN-------KGELRKSPRLR-IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
GEL P +G + P++ I F+ +++ LF P++ R
Sbjct: 664 LGELPPRSDASVVIRGTVAYVPQVSWI--FNATVRDNI------------LFGSPFDPER 709
Query: 435 --RQLGMFGLPSYAHTIPIRDL----------SGGQKARVALAELTLNNPDILILDEPTN 482
R + + L +P DL SGGQK RV++A +N D+ I D+P +
Sbjct: 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLS 769
Query: 483 NLD 485
LD
Sbjct: 770 ALD 772
|
Length = 1622 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 448 TIPIRDLSGGQKA------RVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY 499
PI+ LSGG++ R+AL++L ++L LDEP LD E ++ LAE ++
Sbjct: 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEEL 869
Query: 500 QGG---VILVSHDERLI 513
+I++SH E L
Sbjct: 870 LSDGRQIIIISHVEELK 886
|
Length = 908 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 52/181 (28%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG- 384
+ L++V+ P G++ FG+ +G +G GKST + NLL G
Sbjct: 16 RTIHALNNVSLHIPAGEI------FGV--------IGASGAGKSTLIRCINLLERPTSGR 61
Query: 385 ------ELTP-NKGELRKSPRLRIGKFDQH---------SGEHLFPDDTPCEYLMKLFNL 428
+LT ++ ELRK+ R +IG QH P ++L
Sbjct: 62 VLVDGQDLTALSEKELRKA-RRQIGMIFQHFNLLSSRTVFDNVALP--------LELAGT 112
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
P + + + L + GL A P LSGGQK RVA+A +NP +L+ DE T+ L
Sbjct: 113 PKAEIKARVTELLELVGLSDKADRYP-AQLSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 485 D 485
D
Sbjct: 172 D 172
|
Length = 343 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 9e-07
Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 49/189 (25%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN-- 389
P+L + D++ Y K L V+ AL+GP+G GKST L + +L P
Sbjct: 4 PILQVSDLSV-YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62
Query: 390 -------KGELRKSPR-----LR--IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY---- 430
G SPR LR IG Q P + M ++ N+ Y
Sbjct: 63 ITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ----------PNPFPMSIYENVVYGLRL 112
Query: 431 -------------EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
EKS + ++ + H + LSGGQ+ RV +A + +P I++
Sbjct: 113 KGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL-GLSGGQQQRVCIARVLATSPKIIL 171
Query: 477 LDEPTNNLD 485
LDEPT+ LD
Sbjct: 172 LDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+++EN + +L + G YGL+GPNG GKTTL+R +AT L PSS +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILAT--LTPPSSGTIR 57
Query: 120 YCEQEV 125
Q+V
Sbjct: 58 IDGQDV 63
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-- 131
LF + + +G + GPNG GKT+LLR +A LA P + ++L+ + + D
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILA--GLARPDAGEVLWQGEPIRRQRDEYH 73
Query: 132 ----------AVNIVLSADKN 142
+ L+A +N
Sbjct: 74 QDLLYLGHQPGIKTELTALEN 94
|
Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 68/259 (26%), Positives = 104/259 (40%), Gaps = 60/259 (23%)
Query: 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK 390
L P VL L DV+ P GK+ + ++G G GKST L L + ++
Sbjct: 670 LEPKVL-LRDVSVSVPRGKLTV--------------VLGATGSGKSTLLQSLLSQFEISE 714
Query: 391 GE----------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
G + + R I FD+ L D L E
Sbjct: 715 GRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL-ADAVRVSQL--------EADL 765
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDA 491
QLG GL + + +LSGGQKARV+LA N D+ +LD+P + LD E +
Sbjct: 766 AQLGG-GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV-- 821
Query: 492 LAEAIKNYQGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGEA 549
+ E G +L +H ++ D + AL + +F+G D+ TSL
Sbjct: 822 VEECFLGALAGKTRVLATHQVHVVPRADY-VVALGDGRV-EFSGSSADFMR---TSLYAT 876
Query: 550 MVYNPSVAAEQDDDEDYED 568
+ AAE +++D ++
Sbjct: 877 L------AAELKENKDSKE 889
|
Length = 1560 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRL 399
Y GG L+ +N + + AL+GP+G GKSTFL +L P +GE+ P
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP-- 82
Query: 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLP----------- 443
+ L P+ P E M++ + P+ KS + +GL
Sbjct: 83 -------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILE 135
Query: 444 --------SYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLD-- 485
+ A ++D LSGGQ+ R+ +A +P+IL+ DEPT+ LD
Sbjct: 136 ERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195
Query: 486 -IESIDALAEAIKNYQGGVILVSHD 509
SI+ L +KN + +++V+H+
Sbjct: 196 ATASIEELISDLKN-KVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 60 IKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+ +N FS + + + +L I G + +VGP+G GK+TLL+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLK 46
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 34/204 (16%)
Query: 347 GGKVL--LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------- 394
GG L L V+ ++ V L GP+G GKST L L P++G++
Sbjct: 20 GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDL 79
Query: 395 --KSPR----LR---IGKFDQHSGEHLFPD----DTPCEYLMKL---FNLPYEKSRRQLG 438
PR +R IG Q + P D E L+ + K+ L
Sbjct: 80 VTAEPREVLEVRRTTIGYVSQFL--RVIPRVSALDVVAEPLLARGVPREVARAKAADLLT 137
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
LP ++ SGG++ RV +A + + IL+LDEPT +LD + + E I
Sbjct: 138 RLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
Query: 497 KNYQGGVIL-VSHDERLIRETDCE 519
+G ++ + HDE +RE +
Sbjct: 198 AKARGAALVGIFHDEE-VREAVAD 220
|
Length = 235 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 329 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 388
P L P V + V P G+ ++++N A +G NG GK+T L++L G L P
Sbjct: 923 PGLVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP 982
Query: 389 NKGELR----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRR 435
G + + R +G QH+ LF T E+++ +L +E+++
Sbjct: 983 TSGTVLVGGKDIETNLDAVRQSLGMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQL 1040
Query: 436 QLGMF----GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
++ GL + +DLSGG + ++++A + + +++LDEPT+ +D S +
Sbjct: 1041 EMEAMLEDTGL-HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRS 1099
Query: 492 LAEAIKNYQGG--VILVSH 508
+ + + Y+ G +I+ +H
Sbjct: 1100 IWDLLLKYRSGRTIIMSTH 1118
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 351 LLEKVNFGLDMESRVALVGPNGIGKSTFL---------NLLKGE-LTPNKGELRKSPRLR 400
+L+ +N ++ A++GPNG GKST +L+G+ L + L P R
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 401 IGKFDQHSGEHL---FPDDTP----CEYLM-------KLFNLP-------YEKSRRQLGM 439
H G L +P + P ++L K LP E +L +
Sbjct: 82 -----AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKL 136
Query: 440 FGL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
G+ PS+ SGG+K R + ++ L + ++ ILDE + LDI+++ +AE I
Sbjct: 137 VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK 196
Query: 497 -KNYQGGVILVSHDERLI 513
+ +IL++H +RL+
Sbjct: 197 LMTSENSIILITHYQRLL 214
|
Length = 252 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I++ + ++ + +L I G L+GP+G GK+TLLR
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLR 44
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N + +L I SG L+GP+G GK+TLLR IA
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49
|
Length = 345 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+VEN S + G + + +L I G L+GP+G GK+TLLR + L P+S
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTS 55
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 29/156 (18%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-------------RKSPRLRI 401
++F L +A++G NG GKST +L G + P GEL +S R+R+
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRM 91
Query: 402 GKFDQHSGEHLFPD-------DTPCEYLMKLFNLPYEK----SRRQLGMFGLPSYAHTIP 450
Q L P D P L EK + RQ+G+ LP +A P
Sbjct: 92 --IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL--LPDHASYYP 147
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
L+ GQK R+ LA + P ++I DE +LD+
Sbjct: 148 -HMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 432 KSRRQ-----LGMFGLPSYAHTIPI--RDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
K+RRQ L G+P A + + LSGG RV +A P +LI DEPT L
Sbjct: 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTAL 184
Query: 485 DI----ESIDALAEAIKNYQGGVILVSHDERLIRE 515
D+ + I+ L E + ++L++HD L+ E
Sbjct: 185 DVTIQAQIIELLLELQQKENMALVLITHDLALVAE 219
|
Length = 326 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 27/191 (14%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE------------LRK 395
G+ ++E V+ ++ V L+GPNG GK+T ++ G + + G L
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYE--KSRRQLGMFGLPSYAHTIPIRD 453
R IG Q + +F + + LM + + + +R+ L H +RD
Sbjct: 75 RARRGIGYLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132
Query: 454 -----LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKNYQGGVIL 505
LSGG++ RV +A NP ++LDEP +D + I + E +++ GV++
Sbjct: 133 SMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 506 VSHDERLIRET 516
H+ +RET
Sbjct: 193 TDHN---VRET 200
|
Length = 241 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQG- 501
I LSGG + + LA+ L NP ILILDEPT +D+ + I+ L + QG
Sbjct: 402 AIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-----QGV 456
Query: 502 GVILVS 507
+I++S
Sbjct: 457 AIIVIS 462
|
Length = 506 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-06
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 8/66 (12%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVS 507
R LSGG++ R+ +A L++ +L+LDEPT LD E+ ++ LAE +N V++++
Sbjct: 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKT--VLMIT 531
Query: 508 HDERLI 513
H RL
Sbjct: 532 H--RLT 535
|
Length = 574 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 42/193 (21%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L +N + S AL+GP+G GKSTFL L +G ++I + G++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-------IKIEGNVIYEGKN 75
Query: 412 LFPDD---------------TPCEYLMKLF-NLPY------EKSRRQLGMF---GLPSYA 446
++ ++ TP +LM ++ N+ Y K +++L L A
Sbjct: 76 IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSA 135
Query: 447 HTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
++D LSGGQ+ R+ +A P+++++DEPT+ LD S + E I N
Sbjct: 136 LWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN 195
Query: 499 YQGG--VILVSHD 509
+ +I+V+H+
Sbjct: 196 LKESYTIIIVTHN 208
|
Length = 254 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHD 509
LSGGQK R+++A + NP ILILDE T++LD +S + + I N +G I+++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 510 ERLIR 514
IR
Sbjct: 640 LSTIR 644
|
Length = 1466 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL----- 399
Y K +L+ + + S ++GP+G GKST L +L + +++ ++
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 400 ---RIG--KFDQHSGEHLFPDDTPCEYLMKLFNLPY-----------------EKSRRQL 437
+I K + G +F P +L N+ Y E+ R++
Sbjct: 79 DIFQIDAIKLRKEVG-MVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV 137
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI---ESIDALAE 494
G++ P LSGGQ+ R+ +A P +L++DEPT+ +DI ++I+ L
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 495 AIKNYQGGVILVSHD 509
+KN + +++VSH+
Sbjct: 198 ELKN-EIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 63/218 (28%), Positives = 91/218 (41%), Gaps = 47/218 (21%)
Query: 333 PPVLGLHD--VTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKS----TFLNLL--- 382
+L + D VTF P G V + +NF L + +VG +G GKS + LL
Sbjct: 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 69
Query: 383 ---KGELTPNKGELRKSP-----RLR---IGKFDQHSGEHLFPDDTPCEYLMKLFNL--- 428
G T N E+ P +LR I Q L P E LM++ L
Sbjct: 70 GRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG 129
Query: 429 -----PYEKSRRQLGMFGLPS-------YAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
+E+S R L +P Y H + SGG + RV +A L P +LI
Sbjct: 130 MSKAEAFEESVRMLDAVKMPEARKRMKMYPH-----EFSGGMRQRVMIAMALLCRPKLLI 184
Query: 477 LDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSHD 509
DEPT LD+ ++ A L E + + +I+++HD
Sbjct: 185 ADEPTTALDV-TVQAQIMTLLNELKREFNTAIIMITHD 221
|
Length = 330 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++++ +S G E+ NL I G + L+GPNG GK+TL + I
Sbjct: 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM 47
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 48/206 (23%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL------ 386
PP L + +TF P G + VA+VG G GKS+ L+ L E+
Sbjct: 651 PPTL--NGITFSIPEGAL--------------VAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 387 TPNKGELRKSPRLRIGKFDQHSGEHLF--PDDTP--------CEYLMKLFNLPYEKSRRQ 436
KG + P+ + D LF + C L L LP R +
Sbjct: 695 VHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILP-SGDRTE 753
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
+G G+ +LSGGQK RV+LA +N DI + D+P + +D + E +
Sbjct: 754 IGEKGV----------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHV 803
Query: 497 KNYQGGV-----ILVSHDERLIRETD 517
+G + ILV+H + + D
Sbjct: 804 IGPEGVLKNKTRILVTHGISYLPQVD 829
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 34 ELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGP 93
ELEN + S + S + + ++ G R GL+G
Sbjct: 2 ELENVSKSYPTYKGGSSSLKKLGI-----LGRKGEVGEFWALKDVSFEVPRGERIGLIGR 56
Query: 94 NGHGKTTLLRHIA 106
NG GK+TLLR +A
Sbjct: 57 NGAGKSTLLRLLA 69
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 15/67 (22%)
Query: 450 PIRDLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES-------IDALAEAIKNYQ 500
PI LSGG QK V LA +P +LILDEPT +D+ + I LA K
Sbjct: 398 PIGTLSGGNQQK--VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGK--- 452
Query: 501 GGVILVS 507
++++S
Sbjct: 453 -AILMIS 458
|
Length = 500 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN-YQGGVILVSHDE 510
SGGQ+ R+A+A + P ++ILDEPT++LD I AL ++++ +Q + +SHD
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486
Query: 511 RLIR 514
++R
Sbjct: 487 HVVR 490
|
Length = 529 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++E S S GVE+ + NL + G ++GP+G GK+TLLR IA
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50
|
Length = 248 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
I+V N + + ++ G +GL+GPNG GKTTLL+ +A L P+S ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSGEI 62
Query: 119 LYCEQEV 125
L +V
Sbjct: 63 LVLGYDV 69
|
Length = 293 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI-ESIDALAEAIKNYQGG--VILV 506
I +LSGG+ RVA+A L + D DEPT+ LDI + ++ A I+ G V++V
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNV-ARLIRELAEGKYVLVV 267
Query: 507 SHD 509
HD
Sbjct: 268 EHD 270
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-06
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
V ++GPNGIGKST L +L GEL PN G P
Sbjct: 103 VGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
|
Length = 591 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 342 TFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----KS 396
F YP LE VNF L + + GP G GKST L+L++ ++G++R
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 397 PRLRI----GKFDQHSGE-HLF------------PDDTP--CEYLMKLFN-------LP- 429
+L++ + S LF PD T E++ +L + LP
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 430 -YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
Y+ + G+ LSGGQK R+++A L N +ILILD+ + +D
Sbjct: 440 GYDTEVGERGVM-------------LSGGQKQRISIARALLLNAEILILDDALSAVD 483
|
Length = 569 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 43/185 (23%), Positives = 76/185 (41%), Gaps = 19/185 (10%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
+ +L +N + VA+VG +G GK+T L ++ G +GE + P +
Sbjct: 392 RVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-GRGEEKYRPDSGKVEV 450
Query: 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG----------MFGLPS-YAHTIPIRD 453
+++ L P + E+ E R + G GL + +
Sbjct: 451 PKNTVSALIPGEYEPEFGEVTI---LEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA----EAIKNYQGGVILVSHD 509
LS GQK R LA+L P++L++DE +LD + +A E + +I+V+H
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 510 ERLIR 514
+
Sbjct: 568 PEVGN 572
|
Length = 593 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 9e-06
Identities = 64/238 (26%), Positives = 103/238 (43%), Gaps = 51/238 (21%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTP---NKGELRK---- 395
Y G K + ++ ++ + AL+GP+G GKSTFL + +L P ++GE+
Sbjct: 30 YYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLN 89
Query: 396 ---------SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM-----FG 441
+ R IG Q FP Y L Y RR+ +
Sbjct: 90 ILDSNINVVNLRREIGMVFQKPNP--FPKSI---YNNITHALKYAGERRKSVLDEIVEES 144
Query: 442 LPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---ID 490
L A ++D LSGGQ+ R+ +A P +L+LDEP + LD S I+
Sbjct: 145 LTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204
Query: 491 ALAEAIKNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY--REKLLTS 545
L +K + +I+V+H+ ++ +R +D + L NGD +Y E++ TS
Sbjct: 205 ELITELKE-EYSIIIVTHNMQQALRVSDRTAFFL--------NGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+K + + + + + +L + G YG +GPNG GKTT ++ I
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIIL 47
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-05
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++GPNGIGK+T + +L GEL PN G+ + P
Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEP 134
|
Length = 590 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 44/190 (23%)
Query: 365 VALVGPNGIGKSTFLNLLKGELT----PN----------KGE-LRKSPRLRIGKFDQ--- 406
AL+G NG GKST L L G+LT P GE L R+ +
Sbjct: 30 TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLP 89
Query: 407 HSGEHLFPDDTPCEYLMKLFNLPY-----EKSRRQLGMFGLP---SYAHTIPIRD---LS 455
+ + F ++ L P+ + R + + A + RD LS
Sbjct: 90 QAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLS 147
Query: 456 GGQKARV----ALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGG 502
GG+ ARV LA+L P L+LDEPT LD+ L + + +++ G
Sbjct: 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLG 207
Query: 503 VILVSHDERL 512
V+ + HD L
Sbjct: 208 VLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 41/197 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406
G K L+ V+ + S AL+GP+G GKSTF+ L +L K+ R+ GK
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN-----RMNDLIKNCRIE-GKVSI 76
Query: 407 HSGEHLFPDDT---------------PCEYLMKLF-NLPY----------------EKSR 434
GE ++ D P + M ++ N+ Y E +
Sbjct: 77 E-GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENAL 135
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
R ++ S P LSGGQ+ R+ +A P I++ DEPT+ LD S + +
Sbjct: 136 RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIED 195
Query: 495 AIKNYQGG--VILVSHD 509
I N + +++V+H+
Sbjct: 196 LIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 40/197 (20%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL------------KGELTPNKG--- 391
G K L +N + AL+GP+G GKSTFL L +GE+ +
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 392 -------ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS 444
ELRK R+G Q Y ++ + +K ++ + L
Sbjct: 75 DKDVDVVELRK----RVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130
Query: 445 YAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DAL 492
A ++D LSGGQ+ R+ +A PD++++DEPT+ LD S D +
Sbjct: 131 AALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 493 AEAIKNYQGGVILVSHD 509
E K Y +++V+H+
Sbjct: 191 VELKKEYT--IVIVTHN 205
|
Length = 251 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 63/193 (32%)
Query: 362 ESRV-ALVGPNGIGKSTFLNLL------------KGELT---PNKGELRKSP---RLRIG 402
E++V A++GP+G GKSTFL + +GELT N + P R RIG
Sbjct: 64 ENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIG 123
Query: 403 KFDQHSGEHLFPD-------------------DTPCEYLMKLFNLPYEKSRRQLGMFGLP 443
Q FP D E ++ L +++ + QL GL
Sbjct: 124 MVFQKPNP--FPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAAL-WDEVKDQLDSSGL- 179
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD------IES-IDALAEAI 496
DLSGGQ+ R+ +A +P+++++DEP + LD IE I+ LAE
Sbjct: 180 ---------DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY 230
Query: 497 KNYQGGVILVSHD 509
V++V+H+
Sbjct: 231 T-----VVIVTHN 238
|
Length = 285 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 49/205 (23%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELT-PNK 390
P + + D++F Y K + E ++ + A++GP+G GKSTF+ L EL P K
Sbjct: 6 PAIKVKDLSFYYNTSKAI-EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 391 --------GELRKSPRLRIGKFDQHSGEHLFPDDTP--------CEYLMKLFNLPYEKSR 434
G+ PR+ I + + G +F P Y +++ +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 435 RQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
++ L A ++D LSGGQ+ R+ +A P +L++DEP + LD
Sbjct: 124 DEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDP 183
Query: 487 ESIDALAEAIKNYQG--GVILVSHD 509
+ + E I + + + +V+H+
Sbjct: 184 IATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+++N S + G V+ +L I G +VGP+G GK+TLL + L P+S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG--LDRPTS 58
Query: 116 IDLLYCEQEVEASDDSA 132
++ ++ +
Sbjct: 59 GEVRVDGTDISKLSEKE 75
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+++N + L + VE + NL+I +G +VGP+G GK+TLL + L P+S
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPTS 59
Query: 116 IDLLYCEQEVEASDDSA 132
++L +++ +
Sbjct: 60 GEVLINGKDLTKLSEKE 76
|
Length = 226 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++ N S S + +L I G L+GP+G GKTTLLR IA
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52
|
Length = 352 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 57 SVDIKVENFSLSAKGVELFH---NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
S+ +++ + + V F + + +I G R G++G NG GK+TLL+ IA
Sbjct: 22 SLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIA 74
|
Length = 249 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 45 KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
K KR ++ N I+++N S+ G ++ + + Q+ G + +VGPNG GKTTLL
Sbjct: 17 KEPKKRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSL 76
Query: 105 IAT 107
+
Sbjct: 77 LTG 79
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL------------R 394
G L+ VN + AL+G NG GKST + +L G P KG + +
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 395 KSPRLRIGKFDQHSG--------EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 446
+ +L IG Q E+L+ + + + + + + R + M L
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 447 HTIP---IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID---ALAEAIKNYQ 500
+ +LS K + +A+ + + ++I+DEPT++L + +D + ++
Sbjct: 136 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195
Query: 501 GGVILVSHDERLIRE 515
++ +SH IR
Sbjct: 196 TAIVYISHKLAEIRR 210
|
Length = 510 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-05
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 35/201 (17%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR 394
DV F Y G L+ ++ ++ +S VA +GP+G GKSTFL L +L P +GE+R
Sbjct: 8 DVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 395 KSPR------LRIGKFDQHSGEHLFPDDTP--------CEYLMKLFNLPYEKSRRQLGMF 440
R +++ + ++ G +F P Y +++ + RQ
Sbjct: 67 IDGRNIYDKGVQVDELRKNVG-MVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEE 125
Query: 441 GLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
L A ++D LSGGQ+ R+ +A +P +L++DEP + LD S +
Sbjct: 126 TLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
Query: 493 AEAI----KNYQGGVILVSHD 509
E I K+Y +++V+H+
Sbjct: 186 EELIHELKKDYT--IVIVTHN 204
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 49/212 (23%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---NLLKGELTPNKGELRKSPRLRI 401
Y G K ++ V + A++GP+G GK+T L N + + P R+
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI----------PGFRV 61
Query: 402 GKFDQHSGEHLFPDDT---------------PCEYLMKLF-NLPY--------------- 430
G+ ++ P + M ++ N+ +
Sbjct: 62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDR 121
Query: 431 --EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--- 485
E+S ++ ++ P LSGGQ+ R+ +A P++++LDEPT+ LD
Sbjct: 122 IVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
Query: 486 IESIDALAEAIKNYQGGVILVSHDERLIRETD 517
+ I+ L E + VI+ + + IR D
Sbjct: 182 TQRIEKLLEELSENYTIVIVTHNIGQAIRIAD 213
|
Length = 250 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V+N S + G + + NL+I G ++GP+G GK+TLLR +
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLN 51
|
Length = 258 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 49/175 (28%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411
L+ V+F L+ +A+VG +G GKST LL TP GEL + G+
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY------------YQGQD 78
Query: 412 LFPDDTPCEYLMK-----LFNLPY--------------------------EKSRRQLGMF 440
L D + L++ +F PY E+ + L M
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMM 138
Query: 441 ---GL-PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
GL P + P SGGQ+ R+A+A + +PD+++ DEP + LD+ S+ A
Sbjct: 139 AKVGLRPEHYDRYP-HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV-SVQA 191
|
Length = 327 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 58/214 (27%)
Query: 334 PVLGLHDVTFG-YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG- 391
P G DV+F YPG +VL +VG +G GK+T LN L L P+ G
Sbjct: 18 PRKGCRDVSFDLYPG-EVL--------------GIVGESGSGKTTLLNALSARLAPDAGE 62
Query: 392 -------------------ELRKSPRLRIGKFDQHSGEHLFPDDTP----CEYLMKLFNL 428
E R+ R G QH + L + E LM +
Sbjct: 63 VHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR 122
Query: 429 PYEKSRRQ----LGMFGLPSYAHTIPIRDL----SGGQKARVALAELTLNNPDILILDEP 480
Y R L + I DL SGG + R+ +A + +P ++ +DEP
Sbjct: 123 HYGDIRATAGDWLERVEID----AARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178
Query: 481 TNNLDIESI-----DALAEAIKNYQGGVILVSHD 509
T LD+ S+ D L ++ V++V+HD
Sbjct: 179 TGGLDV-SVQARLLDLLRGLVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 52/205 (25%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKF 404
Y G +++ V+ + AL+GP+G GKST L L N+ E R +R+
Sbjct: 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEVRL--- 68
Query: 405 DQHSGEHLF-PDDTPCEYLMKL---FNLP--------YEKSRRQLGMFGLPSYAHTIPIR 452
G +++ PD P E ++ F P Y+ + + GL + R
Sbjct: 69 ---FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER 125
Query: 453 -----------------------DLSGGQKARVALAELTLNNPDILILDEPTNNLD---- 485
+LSGGQ+ R+ +A P IL++DEPT N+D
Sbjct: 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGT 185
Query: 486 --IESIDALAEAIKNYQGGVILVSH 508
IE + L E K Y ++LV+H
Sbjct: 186 AKIEEL--LFELKKEYT--IVLVTH 206
|
Length = 253 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN--- 389
++ DV Y G L ++ + + AL+GP+G GKSTFL L + N
Sbjct: 4 IISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKI 62
Query: 390 KGELR------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM----------------KLFN 427
GE++ ++ + + + G +F TP + + +L +
Sbjct: 63 TGEIKFEGQNIYGSKMDLVELRKEVG-MVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
E+S +Q ++ + SGGQ+ R+ +A P +++LDEPT+ LD
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 488 SIDALAEAIKN--YQGGVILVSHD 509
S + E + +Q I+V+H+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 62/210 (29%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL------------LKGE 385
L+D+T P +V AL+GP+G GKST L + G+
Sbjct: 22 LYDITISIPKNRV--------------TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGD 67
Query: 386 LTPNKGELRKSP------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY------EKS 433
+ N + S R +IG Q FP N+ Y EK+
Sbjct: 68 ILYNGENIMDSGADVVALRRKIGMVFQRPNP--FPKSI-------YENVAYGPRIHGEKN 118
Query: 434 RRQLGMFGLPSYAHTI---PIRD--------LSGGQKARVALAELTLNNPDILILDEPTN 482
++ L S ++D LSGGQ+ R+ +A NP+++++DEP +
Sbjct: 119 KKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCS 178
Query: 483 NLD---IESIDALAEAIKNYQGGVILVSHD 509
LD I+ L E +K VI+V+H+
Sbjct: 179 ALDPIATAKIEDLIEDLKKEY-TVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD--IES 488
++ QL + GL +A P +LSGG + RV LA IL++DEP + LD I +
Sbjct: 143 KRVDEQLELVGLAQWADRKP-GELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRT 201
Query: 489 --IDALAEAIKNYQGGVILVSHD 509
D L E + ++ VSHD
Sbjct: 202 QLQDELLELQSKLKKTIVFVSHD 224
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNS-VDIKVENFS-LSAKGVELFHNANLQIASGRRYGL 90
+ L F + + + N V I+ E+ LS G L N + +G+R L
Sbjct: 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIAL 381
Query: 91 VGPNGHGKTTLL 102
VGP+G GKT+LL
Sbjct: 382 VGPSGAGKTSLL 393
|
Length = 588 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N S ++ ++ +L I SG+ L+GP+G GKTTLLR IA
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA 49
|
Length = 353 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+PI LSGG + + LA++ L NP +LILDEPT +D+
Sbjct: 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 59/223 (26%), Positives = 83/223 (37%), Gaps = 84/223 (37%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
L +VT Y G V++ K + LD+ V VGP+G GKST L
Sbjct: 6 LRNVTKAY--GDVVISK-DINLDIHEGEFVVFVGPSGCGKSTLL---------------- 46
Query: 396 SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM---------------- 439
R+ G D SG+ LF + K N + R +GM
Sbjct: 47 --RMIAGLEDITSGD-LFIGE-------KRMN-DVPPAERGVGMVFQSYALYPHLSVAEN 95
Query: 440 --FGLP--------------------SYAHTIPIR--DLSGGQKARVALAELTLNNPDIL 475
FGL AH + + LSGGQ+ RVA+ + P +
Sbjct: 96 MSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155
Query: 476 ILDEPTNNLD--------IESIDALAEAIKNYQGGVILVSHDE 510
+LDEP +NLD IE ++ K +I V+HD+
Sbjct: 156 LLDEPLSNLDAALRVQMRIE----ISRLHKRLGRTMIYVTHDQ 194
|
Length = 369 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 4e-05
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 32/195 (16%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---------KGEL 393
+ G L+ ++ + AL+GP+G GKST+L L +L P +G+
Sbjct: 14 FYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQN 73
Query: 394 RKSP-------RLRIGKFDQHSGEHLFPDDTPCEYLMKL--------FNLPYEKSRRQLG 438
+P R ++G Q F Y ++L + E S +Q
Sbjct: 74 IYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 439 MF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAE 494
++ + + H + LSGGQ+ RV +A + PD+++LDEPT+ LD S I+ +
Sbjct: 134 IWDEVKDHLHESAL-SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL 192
Query: 495 AIKNYQGGVILVSHD 509
+++ Q +ILV+H
Sbjct: 193 ELRD-QYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 48 SKRSTVDDNSVDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
K ++ ++I +EN S G + NL I +G+ LVG +G GK+TLL +
Sbjct: 309 EKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368
Query: 107 TRALAIPSSIDL 118
I +
Sbjct: 369 GFLAPTQGEIRV 380
|
Length = 559 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
E+ + G LF + +A+G L GPNG GKTTLLR IA L P++ +
Sbjct: 5 GEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA--GLLPPAAGTIKLD 62
Query: 122 EQEVEASD 129
+++ D
Sbjct: 63 GGDIDDPD 70
|
Length = 207 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+++EN + V + NL IA G L+GP+G GKTT LR IA
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIA 47
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLD 485
LSGGQK RVA+A + NP+I+I DE T+ LD
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174
|
Length = 271 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 45/240 (18%)
Query: 295 EQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG-GKVLLE 353
E A++ + +DDD +E R+ I+ +L L+++T Y G ++
Sbjct: 1908 EPAKEPIFDEDDDVAEE-----RQRIISGGNKTD------ILRLNELTKVYSGTSSPAVD 1956
Query: 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---KSPRLRIGKFDQHSG- 409
++ G+ L+G NG GK+T +L G+ T G+ KS I Q+ G
Sbjct: 1957 RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGY 2016
Query: 410 --------------EHLFPDDTPCEYLMKLFNLPYEKSRR----QLGMFGLPSYAHTIPI 451
EHL+ +L +P E+ + + GL YA +
Sbjct: 2017 CPQFDAIDDLLTGREHLY-------LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLA- 2068
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508
SGG K +++ A + P +++LDEPT +D ++ L I + V+L SH
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 7e-05
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 34/189 (17%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRLRIGKFDQ 406
++KVN + + A++GP+G GKSTFL + +L P+ G L GKF
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF-- 112
Query: 407 HSGEHLFPD------DTPCEYLMKLF-NLPY-----------------EKSRRQLGMFGL 442
+ E L P + +F N+ Y EKS R+ ++
Sbjct: 113 -TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE 171
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
S LSGGQ+ R+ +A P+IL+LDEPT+ LD ++ + + I+ +G
Sbjct: 172 VSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGS 231
Query: 503 --VILVSHD 509
+++V+H+
Sbjct: 232 YTIMIVTHN 240
|
Length = 286 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
VEN + LF N NL + +G R ++G NG GKTTLLR
Sbjct: 322 VENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLR 363
|
Length = 530 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 62 VENFSLS--AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V + SLS K + +L IASG ++GP+G GKTTLL IA
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIA 52
|
Length = 259 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 9e-05
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V N S + +L I SG L+GP+G GKTTLLR IA
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIA 49
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 9e-05
Identities = 46/192 (23%), Positives = 87/192 (45%), Gaps = 34/192 (17%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRI-----GKFDQHSG-EHLFPDDTP 418
+ LVG NG GKST N++ G L+P G++ ++ + + G Q +G E++
Sbjct: 53 IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENI------ 106
Query: 419 CEYLMKLFNLPYEKSRR---------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469
E+ M ++ + +LG F P++ S G +A++ +
Sbjct: 107 -EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQ------PVKKYSSGMRAKLGFSINIT 159
Query: 470 NNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525
NPDIL++DE + D + +D + E K + VSH+ +R+ ++ +E
Sbjct: 160 VNPDILVIDEALSVGDQTFAQKCLDKIYE-FKEQNKTIFFVSHNLGQVRQFCTKIAWIEG 218
Query: 526 KNIRKFNGDFDD 537
++ + G+ DD
Sbjct: 219 GKLKDY-GELDD 229
|
Length = 264 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 9e-05
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 448 TIPIRDLSGGQKARVALAEL---TLNNPDILILDEPTNNLDIESIDALAEAIK---NYQG 501
+ I+ +S G K +AL L +L++DEP N L + + L E +K
Sbjct: 184 KLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGA 243
Query: 502 GVILVSHDERLIR 514
+I +H L+
Sbjct: 244 QLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++V N + V + +L + G LVGP+G GK+TLLR IA
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 41 SQSSKASSKRSTVDDNSVDIKVENFSLSAKGVEL--FHNANLQIASGRRYGLVGPNGHGK 98
Q + + +++ N S + G + N NL +A G + ++G +G GK
Sbjct: 318 DQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 99 TTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133
+TLL + A P + E+ + D+ A+
Sbjct: 378 STLL-QLLAGAW-DPQQGSITLNGVEIASLDEQAL 410
|
Length = 573 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ F V+ + + + G GLVG +G GK+TL R +A L PSS ++
Sbjct: 292 SRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILA--GLLPPSSGSII 349
Query: 120 YCEQEVEAS 128
+ Q+++ +
Sbjct: 350 FDGQDLDLT 358
|
Length = 539 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVD--IKVENFSLSAKGVELF-HNANLQIASGRRYG 89
LE + A + R D++ D I +EN SL + N ++ G R
Sbjct: 364 QALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLL 423
Query: 90 LVGPNGHGKTTLLRHIA 106
+ G +G GKT+LLR +A
Sbjct: 424 ITGESGAGKTSLLRALA 440
|
Length = 604 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE-------SIDALAEAIKNYQGGV 503
+ +LSGG+ RVA+A L + D+ DEP++ LDI I LAE K V
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKY----V 266
Query: 504 ILVSHD 509
I+V HD
Sbjct: 267 IVVEHD 272
|
Length = 591 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
I+VEN E + ++ G +GL+GPNG GKTT ++ + T L P+S
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT--LLKPTS 54
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I V + S+ + +L + G GLVGPNG GKTTLLR I
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAI 49
|
Length = 402 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+VTF YP ++L+ V+F L ALVGP+G GKST + LL+ P G++
Sbjct: 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ + +V+F YP L+ V+F ++ VA++G NG GKST +L G L P GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 393 L 393
+
Sbjct: 66 I 66
|
Length = 271 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 44/166 (26%)
Query: 366 ALVGPNGIGKSTFLNLLKGELTPN--KGELRKS--PR-----LRIGKF----DQHSGEHL 412
AL+G +G GK+T +++L G T +G++R S P+ RI + D HS
Sbjct: 910 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS---- 965
Query: 413 FPDDTPCEYLM--KLFNLPYEKSRRQLGMF------------------GLPSYAHTIPIR 452
P T E L+ LP E S+ + MF GLP +
Sbjct: 966 -PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG------VT 1018
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498
LS Q+ R+ +A + NP I+ +DEPT+ LD + + ++N
Sbjct: 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064
|
Length = 1470 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 52/200 (26%), Positives = 82/200 (41%), Gaps = 33/200 (16%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR------K 395
G K +L +N + A +GP+G GKSTFL + PN KGEL
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 396 SP-------RLRIGKFDQHSGEHLFPDDT--PCEYLMKLFNLP---------YEKSRRQL 437
S R ++G Q FP Y KL L EKS +
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNP--FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV 133
Query: 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
G++ +LSGGQ+ R+ +A P +L++DEP + LD + + + I+
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 498 NYQGG--VILVSHDERLIRE 515
+ +I+V+H + ++
Sbjct: 194 ELKKNFTIIVVTHSMKQAKK 213
|
Length = 251 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-----------SPRLR 400
L V+F + V+++G NG GKST L+ G +G+++ + R +
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 401 IGKFDQHSGEHLF----PDDTPCEYLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIR 452
IG Q+ DD + M+ +P E+ ++ L + + P R
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVA--FGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAEAIKNYQGGVILVSH 508
LSGGQK RVA+A + P+I+ILDE T+ LD E + + E + YQ V+ ++H
Sbjct: 141 -LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199
Query: 509 D 509
D
Sbjct: 200 D 200
|
Length = 277 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 369 GPNGIGKSTFLNLLKGELTPNKGEL--RKSPRLRIGK-FDQHSGEHL-FPDDTPCEYLMK 424
G NG GKS+ L ++ G + P+ G + + I K + + G +L + +K
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLK 92
Query: 425 LFNLPYEKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILI 476
++ Y + L + H + D LS G + VA+A L D+ +
Sbjct: 93 FWSEIYNSAET------LYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWL 146
Query: 477 LDEPTNNLDIESIDALAE--AIKNYQGGVILV-SHDERLIR 514
LDE NL E+ D L +K GG++L+ SH E I+
Sbjct: 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIK 187
|
Length = 195 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILV 506
P LSGGQ+ R+ +A P++L+ DEPT NLD E+ I++L +K ++LV
Sbjct: 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLV 201
Query: 507 SH 508
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 38/193 (19%)
Query: 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-----ELTPNKGEL------RKSP 397
K +L +N + A +GP+G GKSTFL L E T ++GE+ +S
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY---------EKSRRQLGMFGLPSYAH 447
++ + G +F TP E M +F N+ Y K ++ L S A
Sbjct: 155 KISSLELRTRIG-MVFQKPTPFE--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL 211
Query: 448 TIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI--- 496
++D LSGGQ+ R+ +A P++L++DEPT+ LD + + E I
Sbjct: 212 WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271
Query: 497 -KNYQGGVILVSH 508
K Y +I+V+H
Sbjct: 272 KKKYS--IIIVTH 282
|
Length = 329 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 26/109 (23%)
Query: 406 QHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+H+ E D ++LFN+ P S Q I LSGG + +VA
Sbjct: 367 KHADEQQAVSD-----FIRLFNIKTP---SMEQ-------------AIGLLSGGNQQKVA 405
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGG--VILVSHD 509
+A + P +LILDEPT +D+ + + + I + G +ILVS +
Sbjct: 406 IARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
|
Length = 501 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
+V S G+ ++ +L++ G GL+GPNG GKTTL
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF 47
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++V + G+ + + + G +GL+GPNG GKTTL ++ + L P+S +L
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLR-PTSGSVL 58
Query: 120 YCEQEV 125
+ +++
Sbjct: 59 FDGEDI 64
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ V N S+ G +N +L+I G G+VG +G GK+TL R +A
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLA 54
|
Length = 252 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 65 FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107
F K V+ + + G GL+GPNG GKTT LR +A
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG 53
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++VEN S G + N NL I G ++GP+G GK+TLLR I
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI 48
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I+V+N G + H +L++ G ++GP+G GKTTLLR I L P + +
Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI--NLLEQPEAGTIR 61
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKE 149
+ ++ + LS K ++ L++
Sbjct: 62 VGDITIDTA------RSLSQQKGLIRQLRQ 85
|
Length = 250 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 431 EKSRRQLGMFGLPSYAHT-IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES- 488
E+ RR L + + H R LSGG + +V +A+ +P +LI+DEPT +D+ +
Sbjct: 384 ERYRRALNI----KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
Query: 489 --IDALAEAIKNYQGGVILVSHD 509
I L +I V+ +S D
Sbjct: 440 NDIYQLIRSIAAQNVAVLFISSD 462
|
Length = 510 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+VE + + + H +L I G L+GP+G GK+TLLRH++
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLS 51
|
Length = 262 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVS 507
+ LSGGQK R+A+A L P IL+LDE T++LD S + + I + + +I ++
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 508 HDERLIRETD 517
H I+ +D
Sbjct: 1417 HRIASIKRSD 1426
|
Length = 1466 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 45/179 (25%), Positives = 66/179 (36%), Gaps = 48/179 (26%)
Query: 358 GLDMESRVALV-GPNGIGKSTFLNLLKGE----------------LTPNKGELRKSPR-- 398
GL + +V G G G ST L + +TP E++K R
Sbjct: 82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPE--EIKKHYRGD 139
Query: 399 -LRIGKFDQHSGEHLFPDDT---------PCEYLMKLFNLPYEKSRRQLGM--FGLPSYA 446
+ + D H HL +T P + Y K + M +GL +
Sbjct: 140 VVYNAETDVHFP-HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL---S 195
Query: 447 HTIP-------IRDLSGGQKARVALAELTLNNPDILILDEPTNNLD----IESIDALAE 494
HT +R +SGG++ RV++AE +L I D T LD +E I AL
Sbjct: 196 HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKT 254
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDI 486
+SGGQK R+ALA L + +LILDE T+NLD
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
G +VLL+ ++ +V LVG NG GKST L LLK E++ + G
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG 56
|
Length = 638 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+++N S S E+ +L + G ++GP+G GK+TLLR
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLR 46
|
Length = 240 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 334 PVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
++ + ++F YP L+ V+F + VA+VG NG GKST LL G L P G
Sbjct: 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63
Query: 393 LR 394
+
Sbjct: 64 IT 65
|
Length = 279 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA-----LAEAIKNYQGGVILVSH 508
LSGG++ RV +A L P++LI DEPT LD+ S+ A L E + G++ ++H
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDV-SVQAQILQLLRELQQELNMGLLFITH 215
Query: 509 DERLIR 514
+ ++R
Sbjct: 216 NLSIVR 221
|
Length = 529 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
DV++ Y G +L ++ + M S+ +VG +G GKST LL G GE+ +
Sbjct: 478 DVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 400 RIGKFDQH 407
+ D+H
Sbjct: 538 -LKDIDRH 544
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 365 VALVGPNGIGKSTFL---NLLK----GELTPNKGELR-----------------KSPRLR 400
++++G +G GKSTFL N L+ G + N + + R R
Sbjct: 34 ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTR 93
Query: 401 IGKFDQHSG--EHLFPDDTPCEYLMKLFNLPYEKSR----RQLGMFGLPSYAHTIPIRDL 454
+ QH H+ + E +++ L +++R + L G+ A L
Sbjct: 94 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
SGGQ+ RV++A P++L+ DEPT+ LD E
Sbjct: 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186
|
Length = 257 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 41/198 (20%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKS-TFLNLLK------GELTPNKGELRKSPR--LRIG 402
+ ++F L +A+VG +G GKS T L L++ G + +K LR+ R + +
Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91
Query: 403 KFDQHSGEHLFPDDT------PCEYLMKLF--------------NLPYEK----SRRQLG 438
+ H+ D P L +F E+ ++R L
Sbjct: 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLD 151
Query: 439 MFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+P A TI R LSGG + RV +A P +LI DEPT LD+ + +
Sbjct: 152 QVRIPE-AQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 496 IKNYQG----GVILVSHD 509
IK Q GVI ++HD
Sbjct: 211 IKVLQKEMSMGVIFITHD 228
|
Length = 623 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 16/55 (29%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Query: 205 EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 259
E + ++ T+L+VSHD+ FL+ + T I ++ K+ ++G + Y++++KE
Sbjct: 480 EALLDFEGTVLLVSHDRYFLDRVATRIWLVE-DKVEEFEGGYE----DYLEQKKE 529
|
Length = 530 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ EN S + + NL I G L+GP+G GKTT L+ I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI 47
|
Length = 309 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL--AEAIKNY---QGGVIL 505
+R +SGG++ RV++AE ++ +L D T LD S AL + I+
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD--SSTALEILKCIRTMADVLKTTTF 173
Query: 506 VS 507
VS
Sbjct: 174 VS 175
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 49/196 (25%), Positives = 82/196 (41%), Gaps = 51/196 (26%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLK------------GELTPNKGELR----- 394
L+ +N + AL+GP+G GKST L L G+LT + ++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 395 KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY-----------------EKSRRQ 436
R+++G Q P + M ++ N+ Y E+S R
Sbjct: 79 ADLRIKVGMVFQ----------KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG 128
Query: 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALA 493
++ LSGGQ+ R+ +A PD++++DEPT+ LD I+ L
Sbjct: 129 AALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 494 EAI-KNYQGGVILVSH 508
E + KNY +++V+H
Sbjct: 189 EELKKNYT--IVIVTH 202
|
Length = 249 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 52/199 (26%)
Query: 358 GLDMESRV----ALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPRLRIGKFDQHSGEH 411
GL++E R A++GPNG GKST L G + G + F
Sbjct: 19 GLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE---------FKGKDLLE 69
Query: 412 LFPDDTPCEYLMKLFNLPYE---KSRR---QLGMFGLPSYAHTIPI-------------- 451
L P+D E + F P E S + Q + + SY P+
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIA 129
Query: 452 -----RDL---------SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK 497
DL SGG+K R + ++ + P++ ILDE + LDI+++ +A+ +
Sbjct: 130 LLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN 189
Query: 498 NYQGG---VILVSHDERLI 513
+ + G I+V+H +R++
Sbjct: 190 SLRDGKRSFIIVTHYQRIL 208
|
Length = 248 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 52/213 (24%), Positives = 85/213 (39%), Gaps = 68/213 (31%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELR----- 394
+ G L ++ + AL+GP+G GKSTFL L +L P +GE+
Sbjct: 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74
Query: 395 -KSPRL-------RIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY--------------- 430
P + R+G Q FP +F N+ Y
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNP--FPK--------SIFENVAYGLRVNGVKDKAYLAE 124
Query: 431 --EKSRRQLGMFGLPSYAHTIPIRD--------LSGGQKARVALAELTLNNPDILILDEP 480
E+S R ++ ++D LSGGQ+ R+ +A P++L++DEP
Sbjct: 125 RVERSLRHAALWD--------EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEP 176
Query: 481 TNNLD---IESIDALAEAIK-NYQGGVILVSHD 509
+ LD + I+ L +K Y +I+V+H+
Sbjct: 177 ASALDPIATQKIEELIHELKARYT--IIIVTHN 207
|
Length = 253 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHD 509
LSGGQ+ R+ +A PDIL++DEP + LD S L E + KNY +I+V+H+
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221
|
Length = 267 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 19/69 (27%), Positives = 37/69 (53%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G GE R +P
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66
Query: 398 RLRIGKFDQ 406
+++G Q
Sbjct: 67 GIKVGYLPQ 75
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 5e-04
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ + S G + +L + G ++GP+G GK+TLLR I
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 509
LSGGQ+ R+ +A P++L++DEPT+ LD S I+ L + +K +Y +++V+H+
Sbjct: 147 LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204
|
Length = 250 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 37/183 (20%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
P + +++++F Y K+L E V+ + A++GP+G GKSTFL L + + E+
Sbjct: 6 PAIKVNNLSFYYDTQKIL-EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLN-RMNELESEV 63
Query: 394 RKSPRLRIGKFDQHSGEH-------------LFPDDTPCEYLMKLF-NLPYEKS----RR 435
R R+ F+Q+ E + P P + M ++ N+ Y R
Sbjct: 64 RVEGRVEF--FNQNIYERRVNLNRLRRQVSMVHP--KPNLFPMSVYDNVAYGVKIVGWRP 119
Query: 436 QLGMFGLPSYA-----------HTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTN 482
+L + + A H I DLSGGQ+ R+ +A P +L++DEP
Sbjct: 120 KLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCF 179
Query: 483 NLD 485
LD
Sbjct: 180 GLD 182
|
Length = 261 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 56/219 (25%), Positives = 82/219 (37%), Gaps = 79/219 (36%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--GELTPN---KGELRKSPRL 399
Y G +E VN ++ S A +GP+G GKST L L E+ P +GE+
Sbjct: 13 YYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD--- 69
Query: 400 RIGKFDQHSGEHLF-PDDTPCEYLMKLFNLPYEKSRRQLGM-FGLPSYAHTIPIRD---- 453
GE L+ P P RR +GM F P+ T+ IRD
Sbjct: 70 ---------GEDLYGPGVDPVAV------------RRTIGMVFQRPNPFPTMSIRDNVVA 108
Query: 454 ----------------------------------------LSGGQKARVALAELTLNNPD 473
LSGGQ+ R+ +A PD
Sbjct: 109 GLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPD 168
Query: 474 ILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSHD 509
+L++DEP + LD S I+ L +K +++V+H+
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHN 206
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
G E+ N G L+G NG GK+TLL H+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLN 39
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 59 DIKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+I+ EN + S + + + N I G +VGP G GKTTL+
Sbjct: 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLIN 47
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 6e-04
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIK-NYQGGVILVSHD 509
LSGGQ+ R+ +A PD++++DEPT+ LD S ++ L + +K +Y +I+V+H+
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225
|
Length = 271 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
I+V + +L + NL I + L+GP+G GK+TLLR
Sbjct: 2 TMKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLR 51
|
Length = 253 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 44/220 (20%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLL--------- 382
P + + V F Y +VL N +D R A++GP+G GKST L L
Sbjct: 3 PKIKIRGVNFFYHKHQVL---KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 383 ---KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY-------- 430
+G + + + SP L + + G +F P + +F N+ +
Sbjct: 60 ARLEGAVLLDNENIY-SPNLDVVNLRKRVG-MVFQQPNP--FPKSIFDNVAFGPRMLGTT 115
Query: 431 ---------EKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480
EKS RQ ++ + H + LSGGQ+ R+ +A + P+++++DEP
Sbjct: 116 AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA-LSGGQQQRLCIARVLAIEPEVILMDEP 174
Query: 481 TNNLDIES---IDALAEAIKNYQGGVILVSHDERLIRETD 517
+ LD S I+ L + +K I+ + ++ R +D
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD 214
|
Length = 251 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N + S LF + + +G + GPNG GKTTLLR +A L P S
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA--GLLRPDS 54
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ + + G GL+G NG GKTTLLR IAT L IP S
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIAT--LLIPDS 56
|
Length = 245 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++EN S G +L I G + L+GP+G GKTTLLR IA
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIA 47
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL----RHIATRALAIPSSID 117
+ N S G L H +L +G+ GL+G NG GK+TLL RH PS +
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP------PSEGE 67
Query: 118 LLYCEQEVEASDDSA 132
+L Q +E+ A
Sbjct: 68 ILLDAQPLESWSSKA 82
|
Length = 265 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 60 IKVENFS-----LSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
I++EN S V + +L+I G +G++G +G GK+TLLR I L P+
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI--NLLERPT 59
Query: 115 SIDLLYCEQEVEASDDSAV 133
S + Q++ A ++ +
Sbjct: 60 SGSVFVDGQDLTALSEAEL 78
|
Length = 339 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 44/250 (17%)
Query: 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-------NLLKGELTPNKGELRK-- 395
+ GG + L V+ + + +A +GP+G GKST L +L+ G + R
Sbjct: 29 FYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRN 88
Query: 396 --SPRLRIGKFDQHSGEHLF--PDDTPCEYLMKLFNLP----YEKSRRQLGMFGLPSYAH 447
++ K + G +F P+ P + P Y+ + +L L A
Sbjct: 89 IYDSQINSVKLRRQVG-MVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAI 147
Query: 448 TIPIRD--------LSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAI 496
++D LSGGQ+ R+ +A PD+L++DEP + LD ++ L +
Sbjct: 148 WEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207
Query: 497 KNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY---REKLLT-SLGEAMV 551
K Q +I+V+H+ ++ R D + FN + D+Y R KL+ S E M
Sbjct: 208 KE-QYTIIMVTHNMQQASRVADWTAF---------FNTEIDEYGKRRGKLVEFSPTEQMF 257
Query: 552 YNPSVAAEQD 561
+P ++
Sbjct: 258 GSPQTKEARE 267
|
Length = 274 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 9e-04
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LS GQ+ + LA L IL+LDE T ++D E+ + + I+ V+ ++H R
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAH--R 197
Query: 512 L 512
L
Sbjct: 198 L 198
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 36/157 (22%)
Query: 3 KKLSHKEKKQLKKQSKYQQEL----SALSGGQGT--------DELENFTVSQSSKASSKR 50
K+L +EK++ +Q ++EL S+ Q +EL S+ KR
Sbjct: 252 KRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEEL-------LSQEFQKR 304
Query: 51 STVDD----------NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ + + V I+ EN S L + + ++ G G++GPNG GK+T
Sbjct: 305 NETAEIYIPPGPRLGDKV-IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKST 363
Query: 101 LLRHIATR------ALAIPSSIDLLYCEQEVEASDDS 131
L R I + + I ++ L Y +Q +A D +
Sbjct: 364 LFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397
++ V+ P K +L+ ++ +++ ++G NG GKST L ++ G +GE R +P
Sbjct: 9 MNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68
Query: 398 RLRIG 402
+++G
Sbjct: 69 GIKVG 73
|
Length = 556 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLR 103
+I+ EN F + + +L+I G + +VG +G GK+TLL+
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
|
Length = 709 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 60 IKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S G E + N + I G ++GP+G GK+TL R I
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.001
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 60 IKVENFSLS----AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
++V+N S+S V+ + + I G GLVG +G GK+TL R I L P+S
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAIL--GLLKPTS 59
Query: 116 IDLLYCEQEVEASDDS 131
+++ +++
Sbjct: 60 GSIIFDGKDLLKLSRR 75
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
++ +N S +N +L + YGL+GPNG GK+TLL+ I
Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMI 46
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I++ N S + + NL++ +G L+GP+G GK+TLLR IA
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIA 47
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++++N S E+ NL I G + ++GPNG GK+TL + IA
Sbjct: 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIA 54
|
Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 27/201 (13%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL---------K 383
+L + ++T + G K L + V+ + V+L G NG GKST + +L +
Sbjct: 3 EYLLEMKNITKTFGGVKAL-DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE 61
Query: 384 GELTPNKGEL-----RKSPRLRIGKFDQH--------SGEHLFPDDTPCEYLMKLFNLPY 430
GE+ EL R + R I Q E++F + + ++ Y
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID 490
++++ L L T P+ +L GQ+ V +A+ +LILDEPT +L
Sbjct: 122 LRAQKLLAQLKLDINPAT-PVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETA 180
Query: 491 ALAEAIKNYQ-GGV--ILVSH 508
L + I++ + G+ I +SH
Sbjct: 181 VLLDIIRDLKAHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.001
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-----IKNYQGGVILVS 507
+LSGGQ+ R+ +A N +I+ LD+P + LDI D L + +++ + ++LV+
Sbjct: 140 NLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199
Query: 508 HDERLIRETDCELWALEKKN 527
H + + D W + K+
Sbjct: 200 HKLQYLPHAD---WIIAMKD 216
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 18/75 (24%)
Query: 455 SGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAI----------KN 498
S GQK R+ALAE N I+ LDEPT NLD E+I++LA A+ +N
Sbjct: 1201 SAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRN 1260
Query: 499 YQGGVILVSHDERLI 513
+Q +++++HDE +
Sbjct: 1261 FQ--LLVITHDEDFV 1273
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 454 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ---GGVI 504
LSGG+ R+ LA LT +L +LDEP+ L D L E +K + V+
Sbjct: 138 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVL 193
Query: 505 LVSHDERLIRETD 517
+V HDE IR D
Sbjct: 194 VVEHDEDTIRAAD 206
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQG 501
H I LSGG + +V + L P+IL+LDEPT +D+ E +AE K +G
Sbjct: 384 GHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKG 443
Query: 502 GVILVSHDERLIRETD 517
+I+ S L+ TD
Sbjct: 444 IIIISSEMPELLGITD 459
|
Length = 491 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 62 VENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120
+EN S S KG E+ + +L + +G L G NG GKTTL + +A L SS +L
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA--GLIKESSGSILL 59
Query: 121 CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDELKSIEADA 179
+ ++A + + D + +L + + E + LK ++ A
Sbjct: 60 NGKPIKAKERRKSIGYVMQDVDY-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 180 AEPRARRILAG------------LGFTTIYI---PSS--------RVHEIMRTW---KKT 213
+ R L+G L + I P+S RV E++R K
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 214 LLVVSHDQSFLNNICTDIIHLD 235
++V++HD FL +C ++ L
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN S LF + + + +G + GPNG GKTTLLR +A
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILA 49
|
Length = 209 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN + V + + + G +GL+GPNG GKTT +R I
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMIL 47
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN S ++ +L++ G L+G NG GKTTLL+ I
Sbjct: 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIM 50
|
Length = 237 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+K+++ +S + E+ NL + G + ++GPNG GK+TL + IA
Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIA 47
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ +N + + KG + + +L + SG GL+GPNG GKTT
Sbjct: 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT 44
|
Length = 241 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 30/181 (16%)
Query: 358 GLDMESR----VALVGPNGIGKSTFLNLL---------KGELTPNKGELRKS---PRLRI 401
G+D+E R V L G NG GKST + +L GE+ + L+ S R
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78
Query: 402 GKFDQHSGEHLFPDDTPCEYL-----------MKLFNLPYEKSRRQLGMFGLPSYAHTIP 450
G H L P+ + E + +N Y +++ L L + T P
Sbjct: 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138
Query: 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GV--ILVS 507
+ D GGQ+ V +A+ +LILDEP+++L + + L + I++ + GV + +S
Sbjct: 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198
Query: 508 H 508
H
Sbjct: 199 H 199
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 347 GGKVLLEKVNFGLDMES--------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
G +VL+ G +E L G +G+GKST LN L EL GE+ +
Sbjct: 12 GYEVLVVSAKTGEGIEELKPLLKGKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEK 69
|
Length = 161 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 25/188 (13%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL--------------NLLKGELTPNKGE 392
G K L +N ++ AL+G +G GKSTFL L++ E K +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 393 LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---------RQLGMFGLP 443
+ R +G Q + Y KL + K +++G+F
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIK--NYQG 501
LSGGQ+ R+ +A P +L+LDEPT+ LD S + E +K ++
Sbjct: 133 KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 502 GVILVSHD 509
+I+V+H+
Sbjct: 193 SMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 44 SKASSKRSTVDDNSVDIKVENFSLSAKGVELF-------HNANLQIASGRRYGLVGPNGH 96
S + + + +++ E +L + + LF + +++I R +GP+G
Sbjct: 3 SHGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGC 62
Query: 97 GKTTLLR 103
GK+TLLR
Sbjct: 63 GKSTLLR 69
|
Length = 272 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---IDALAEAIKNYQGGVILVSH 508
LSGGQ+ R+ +A P++L+LDEPT+ LD S I+ L +K+ + +++V+H
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|226984 COG4637, COG4637, Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 449 IPIRD--LSGGQKARVALAELTLN--NPDILILDEPTNNLDIESIDALAEAIKNY--QGG 502
P RD LS G +ALA L L+ P +L+LDEP +L + + ALAE +++ +
Sbjct: 264 DPFRDRELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRSQ 323
Query: 503 VILVSHDERLIR--ETDCELW 521
VI+ +H RL+ E W
Sbjct: 324 VIVSTHSPRLLNAVEEHSVFW 344
|
Length = 373 |
| >gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.002
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 451 IRDLSGGQKA-------RVALAEL-----TLNNPDILILDEPTNNLDIESIDALAEAIKN 498
LSGG+K ALA P ++ LDE LD E+I +L E ++
Sbjct: 20 SGTLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
|
Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 33 DELENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGV-ELFHNANLQIASGRRYGLV 91
+ L + + K + ++ S++ G + + G R LV
Sbjct: 295 EALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALV 354
Query: 92 GPNGHGKTTLL 102
GP+G GK+TLL
Sbjct: 355 GPSGAGKSTLL 365
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC 121
+ + G LF + +A+G + GPNG GKTTLLR +A L+ P + +L
Sbjct: 3 ADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILA--GLSPPLAGRVLLN 60
Query: 122 EQEVEASDDS 131
++ DS
Sbjct: 61 GGPLDFQRDS 70
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+VE+ K G + +L I G + L+GPNG GK+TLL H+
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHL 51
|
Length = 274 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++VEN + ++ +L + G L+G NG GKTTLL+ I
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIM 47
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN ++ + ++ +L + +G+ L+GPNG GK+TLL+ A
Sbjct: 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA 49
|
Length = 255 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
N VD++ +F+ + +F N +L + G+ ++GP+G GKTTLLR I
Sbjct: 5 ANLVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLI 53
|
Length = 269 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS 114
I +EN S S + + +L I G ++GPNG GK+TLL + +R L S
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDS 55
|
Length = 252 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+++N F + + +N +L I +G +G++G +G GK+TL+R I
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI 51
|
Length = 343 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ +L +A G LVGP+G GK+TLLR +A
Sbjct: 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA 51
|
Length = 356 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 454 LSGGQKARVALA-----ELTLNNPDIL-ILDEPTNNLDIESIDALAEAIKNYQ-GG--VI 504
LSGG+ R+ LA LT +L +LDEP+ L + L E +K + G VI
Sbjct: 482 LSGGEAQRIRLATQIGSGLT----GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVI 537
Query: 505 LVSHDERLIRETD 517
+V HDE IR D
Sbjct: 538 VVEHDEDTIRAAD 550
|
Length = 935 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I+ N S + GV H+ +L I G L GP+G GKTTLL+ +
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLL 48
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+V + S + +L + G ++G +G GK+TLLR I
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLIL 55
|
Length = 263 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
N +L I +G + ++G G GK+TLL+ +A L P+S
Sbjct: 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLA--GLYKPTS 58
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLL 102
V+ K F G + + +L I +G LVGP+G GK+TL+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV 45
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
I++EN +L E N NL I + L+GP+G GK+TLLR +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTT 100
+ EN + S K ++ ++ +L++ SG GL+GPNG GKTT
Sbjct: 5 LVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTT 45
|
Length = 243 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 12 QLKKQSKYQQELSALS-GGQGTDELENFTVSQSSKASSKRSTVDD-NSVDIKVENFSLSA 69
+ +K +KYQ+ + L Q EL+ F + ++ + + N +I+ NF
Sbjct: 33 EFQKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN 92
Query: 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHI 105
+ + H+ NL I + +GP+G GK+T LR++
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
|
Length = 329 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 51/185 (27%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKST----FLNLLK---GELTPNKGELRKSP------- 397
+EKV+F L ++LVG +G GKST L L++ GE+ N +
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQ----LGMFGL-PSYAHT 448
R I Q L P T + +M+ LP + + + L GL P +A
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459
Query: 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----ESIDALAEAIKNYQGGVI 504
P + SGGQ+ R+ +A NP ++I DE + LD+ + I+ L + +++ +
Sbjct: 460 YP-HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518
Query: 505 LVSHD 509
+SHD
Sbjct: 519 FISHD 523
|
Length = 623 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
R+LSGGQ+ RVA+ + P + + DEP +NLD
Sbjct: 133 RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 453 DLSGG--QKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILV 506
++SGG Q+ +ALA L P +I DEPT +LD+ + +D L ++ G++LV
Sbjct: 140 EMSGGMLQRMMIALALLC-EAP-FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLV 197
Query: 507 SHD 509
+HD
Sbjct: 198 THD 200
|
Length = 254 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| KOG0066|consensus | 807 | 100.0 | ||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0927|consensus | 614 | 100.0 | ||
| KOG0062|consensus | 582 | 100.0 | ||
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| KOG0062|consensus | 582 | 100.0 | ||
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.98 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.98 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| KOG0927|consensus | 614 | 99.98 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.98 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| KOG0056|consensus | 790 | 99.97 | ||
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.96 | |
| KOG0059|consensus | 885 | 99.96 | ||
| KOG0054|consensus | 1381 | 99.96 | ||
| KOG0061|consensus | 613 | 99.95 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| KOG0066|consensus | 807 | 99.94 | ||
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.93 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.93 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| KOG0063|consensus | 592 | 99.93 | ||
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.92 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.92 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.91 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.9 | |
| KOG2355|consensus | 291 | 99.9 | ||
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.9 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.89 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.89 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.89 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.89 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.88 | |
| KOG0060|consensus | 659 | 99.88 | ||
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.88 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.88 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.88 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.88 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.87 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.87 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.87 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.87 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.87 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.87 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.87 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.87 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.87 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.86 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.86 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.86 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.86 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.86 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.86 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.86 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.86 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.86 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.86 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.86 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.86 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.86 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.86 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.86 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.86 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.86 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.86 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.86 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.86 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.86 | |
| KOG0064|consensus | 728 | 99.86 | ||
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.86 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.85 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.85 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.85 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.85 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.85 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.85 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.85 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.85 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.85 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.85 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.85 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.85 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.85 | |
| KOG0065|consensus | 1391 | 99.85 | ||
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.85 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.85 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.85 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.85 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.85 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.85 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.85 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.85 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.85 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.85 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.85 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.85 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.85 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.85 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.85 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.85 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.85 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.85 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.85 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.84 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.84 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.84 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.84 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.84 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.84 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.84 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.84 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.84 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.84 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.84 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.84 |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-120 Score=916.04 Aligned_cols=542 Identities=60% Similarity=0.979 Sum_probs=512.6
Q ss_pred ChHHHHHHHHhHHHHHHHHhhcCCCCCcccc-cceeeecccccCCcccCCCCccceEEeeeEEEeCCceeeeeeeEEEeC
Q psy16366 6 SHKEKKQLKKQSKYQQELSALSGGQGTDELE-NFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIAS 84 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~I~i~nls~~~~~~~ll~~isl~i~~ 84 (568)
..+|+||.++|++|+++++... ++.+++ +|||||.++ ++++.++++|++||+|+||+++..|+.+|.|+||+|..
T Consensus 214 egqek~kq~~Q~Eyerq~~g~~---~~~~l~n~FtvSQ~~k-s~~q~A~lEna~DIKiEnF~ISA~Gk~LFvnA~L~Iv~ 289 (807)
T KOG0066|consen 214 EGQEKKKQKDQEEYERQMEGIG---SGAELGNHFTVSQLSK-SGTQLAQLENAMDIKIENFDISAQGKLLFVNASLTIVY 289 (807)
T ss_pred cchhhhhhhHHHHHHHHhhccc---chhhhcccccHHHhhh-hhhHHHHHhhcccceeeeeeeecccceeeeccceEEEe
Confidence 4678999999999999987443 355777 999999999 87888899999999999999999999999999999999
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhccHHHHHHHHHHHHHhh-ccCCCh--
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLER-DESGDN-- 161 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~~-- 161 (568)
|+|||||||||.||||||++|+.+.+.||+++++++|+|++.++++++++.|+.+|..|..+++++..+.. ++.++.
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~ta 369 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTA 369 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888876 555554
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc-----------------------cCCCc--------------h---
Q psy16366 162 QLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-----------------------IYIPS--------------S--- 201 (568)
Q Consensus 162 ~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-----------------------L~~eP--------------n--- 201 (568)
++++.+++++|+.+|++++++|+|+||+||||+. ||+|| |
T Consensus 370 aErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI 449 (807)
T KOG0066|consen 370 AERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449 (807)
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence 8899999999999999999999999999999975 44444 2
Q ss_pred HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Q psy16366 202 RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSK 281 (568)
Q Consensus 202 ~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (568)
||++||+.|++|+||||||+.||++||+.||||++.+++||+|||..|.+|+.|++++..+.|++|+++++++++.|.+.
T Consensus 450 WLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~ 529 (807)
T KOG0066|consen 450 WLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSA 529 (807)
T ss_pred ehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHhcc-cCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEE
Q psy16366 282 EKAERQHSHKALKEQA--RKRVQ-KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 358 (568)
Q Consensus 282 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~ 358 (568)
++++++.+..+++++. ..+.+ ..++..+++++.+|++|.++|.||.|+...||+|.+++|+|.|++.+++|++++|.
T Consensus 530 KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFG 609 (807)
T KOG0066|consen 530 KQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFG 609 (807)
T ss_pred HHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhccccc
Confidence 9999999888887654 33333 34556788999999999999999999999999999999999999999999999999
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 438 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~ 438 (568)
|+..++||||||||.||||||++|.|.+.|+.|+.+.+++.+||++.|+...++..+.|+.+|+.+.|+++++++|..|+
T Consensus 610 iDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG 689 (807)
T KOG0066|consen 610 IDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLG 689 (807)
T ss_pred ccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc
Q psy16366 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 439 ~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~ 518 (568)
.|||..+.|+..+..||||||.||+||-..+..|+|||||||||+||++|+++|.++|++|.++|||||||.++|.++.|
T Consensus 690 ~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 690 TFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDC 769 (807)
T ss_pred hhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCeEEEEcCCHHHHHHHHHHHHhhhhh
Q psy16366 519 ELWALEKKNIRKFNGDFDDYREKLLTSLGEAMV 551 (568)
Q Consensus 519 ~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~ 551 (568)
.+||+++..|.+++|+|++|++++++.+++++.
T Consensus 770 ~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGEv~v 802 (807)
T KOG0066|consen 770 NLWVVENQGIDEIDGDFEDYKKEVLDALGEVLV 802 (807)
T ss_pred eEEEEccCChhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-88 Score=735.65 Aligned_cols=478 Identities=34% Similarity=0.547 Sum_probs=397.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc------CCCceEEEEeccccCCch-
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI------PSSIDLLYCEQEVEASDD- 130 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i------p~~~~i~~~~qe~~~~~~- 130 (568)
.+|+++|+|++|+++++|+++||+|.+|+||||||+||||||||||+|+|...|. +++..+.|+.|+...++.
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 4789999999999999999999999999999999999999999999999986543 445678999999887754
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc--------------
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLER-DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-------------- 195 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-------------- 195 (568)
+....|+........+..+...+.. ...+ ....+.++..++..++.+.++.++..+|.+|||+.
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADP-DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 6667777776666666666655543 2222 33455556666666777888899999999998864
Q ss_pred ---------------cCCCc-h--------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 196 ---------------IYIPS-S--------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 196 ---------------L~~eP-n--------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
|+||| | ||++||++|.+|||||||||+||++|||+|++++.|++..|.|||+.|.+
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLE 240 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHH
Confidence 88899 2 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC-C
Q psy16366 252 MYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP-Y 330 (568)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 330 (568)
+++++.+.+.++++++++++++++.+..+......+.+....+.+...++.... ....+.....+..+.|+.+. .
T Consensus 241 ~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~----~~~~~~~~~~~~~~~f~~~~~~ 316 (530)
T COG0488 241 QKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARL----AEERPVEEGKPLAFRFPPPGKR 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhh----hhcccccccccceeeccCCccc
Confidence 999999999999999999988888765543333322223333333333332110 00001111233445666665 3
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
.++++++++|++++|++++++++++||.|.+|+++||+||||+|||||||+|+|.+.|.+|.|.+....++||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~- 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD- 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-
Confidence 6788999999999996557899999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q psy16366 411 HLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~ 489 (568)
.++++.|+.+++.... ......++.+|++|+|++....+++..||||||.||+||++++.+|+||||||||||||++++
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 3457889999998765 334788999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
++|.++|.+|.+|||+||||++|+..+|+++|++++ ++..+.|+|++|.+..
T Consensus 476 ~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 476 EALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred HHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 999999999999999999999999999999999999 8889999999998653
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-85 Score=683.97 Aligned_cols=492 Identities=40% Similarity=0.699 Sum_probs=422.3
Q ss_pred ccCCCCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch
Q psy16366 51 STVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD 130 (568)
Q Consensus 51 ~~~~~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~ 130 (568)
....+++.+++++|+|++|.|+++++|++|.+++|++|||+|+|||||||+|++|+|+..|+|.++++..+.+++.....
T Consensus 67 l~s~~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~ 146 (614)
T KOG0927|consen 67 LFSHPISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEK 146 (614)
T ss_pred cccCcccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHH-hccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc--------------
Q psy16366 131 SAVNIVL-SADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT-------------- 195 (568)
Q Consensus 131 ~~~~~v~-~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~-------------- 195 (568)
++++.++ ..+..+..+....+.+.........+.+..+++++..++....+.++..+|.++||..
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 9888887 4555554443333344332122346778889999999999999999999999999875
Q ss_pred -----------------cCCCc-h--------HHHHHHhccCC-eEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 -----------------IYIPS-S--------RVHEIMRTWKK-TLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 -----------------L~~eP-n--------~L~~~l~~~~~-tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+||| | ||++||..+.. ++|||||+++||+.|||+||+|+++++.+|.|||+.
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQ 306 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHH
Confidence 77888 2 99999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHHHHHHHhcccCCCCCchhhhcCC-ccceeeeecC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEK-AERQHSHKALKEQARKRVQKDDDDEPKELLEKP-REYIVKFRFP 326 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 326 (568)
|..++.+....++++|+++++++.+++....+.-. .....+++.++.+...+++.. .+.+++ .+....|.||
T Consensus 307 y~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~------gL~ek~~~~k~l~~~f~ 380 (614)
T KOG0927|consen 307 YVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEAD------GLTEKVVGEKVLSFRFP 380 (614)
T ss_pred HhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhc------cccccccCCceEEEEcc
Confidence 99999999999999999999999988764221100 000111122222222222211 112222 2345688999
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEec
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q 406 (568)
.....++|++.+.||+|+|+++..+++++||.|+.++++++|||||||||||||+++|.+.|+.|.|..+...+++++.|
T Consensus 381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Q 460 (614)
T KOG0927|consen 381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQ 460 (614)
T ss_pred cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhh
Confidence 98888899999999999997666799999999999999999999999999999999999999999999988889999999
Q ss_pred CCCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
|..+++..+.++.++++..+. ...+.++.+|++|||.+.....|+++||+|||+||++|++++.+|++||||||||||
T Consensus 461 h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 998899999999999887654 456789999999999998888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 485 DIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 485 D~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
|+++++++.++|++|.++||+||||..+|.+++.++|+++||.+..++|++..|.+++.+.+..
T Consensus 541 Di~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~ 604 (614)
T KOG0927|consen 541 DIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAK 604 (614)
T ss_pred CchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999887766543
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=658.37 Aligned_cols=472 Identities=39% Similarity=0.605 Sum_probs=396.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 136 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v 136 (568)
+.||.+.+|+++||++.+|.+.+|++..|+||||||+||+|||||||+|+. .+++++.++||+..++......+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 789999999999999999999999999999999999999999999999996 45677888999999999999999
Q ss_pred HhccHHHHHHHHHHHHHhhccCCChHHHHHHHHH-HH-----------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADKNRVKLLKECSKLERDESGDNQLRLTEVYD-EL-----------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~-el-----------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.+|..+..++.++.++..- ..+.++++ -| ..+...+++-|.|..|+..-|.. |+|||
T Consensus 152 l~~D~~~~dfl~~e~~l~~~------~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEP 225 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAG------LTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEP 225 (582)
T ss_pred hhccHHHHHHHHhhhhhhcc------chHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCC
Confidence 99999999888777655331 12333333 12 22344566667777776665554 88999
Q ss_pred -h--------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16366 201 -S--------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQI 271 (568)
Q Consensus 201 -n--------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (568)
| ||++||+.|+.|+|+||||+.||+.||+.|||+++.+|.+|.|||+.|.+.+.++..+++.+|+.+.+..
T Consensus 226 TNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R 305 (582)
T KOG0062|consen 226 TNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYR 305 (582)
T ss_pred cccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHH
Confidence 2 9999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEEeeEEEeCCCc-
Q psy16366 272 REMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLHDVTFGYPGGK- 349 (568)
Q Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~v~~~y~~~~- 349 (568)
++++.+.-+..-..++.....++-++..++ +.+.+...+..+.|.||+ ....++|++++.+|+|.|+.+.
T Consensus 306 ~h~q~fid~FrYna~ra~svqSRIk~L~kl--------~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y 377 (582)
T KOG0062|consen 306 AHLQVFIDKFRYNAARASSVQSRIKMLGKL--------PALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEY 377 (582)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHhccC--------CCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcch
Confidence 887765321110000000111121121111 111111223456788888 4456789999999999996666
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc-CC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NL 428 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~ 428 (568)
+++.++++.+...++++++|+||+||||++|++.|.+.|..|.+..+++.+|+|++|+..+++....+.++++...+ +.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 79999999999999999999999999999999999999999999999999999999998877666666777776654 67
Q ss_pred CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q psy16366 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 508 (568)
Q Consensus 429 ~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 508 (568)
..+++++.|+.|||++....+++..||||||-||+||.+.+.+|++|+|||||||||.+++.+|.++|+.|+|+||+|||
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSH 537 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSH 537 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEEC
Confidence 88999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 509 DERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
|.+|+..+|.++|+++||+++.+.|++++|++....++..
T Consensus 538 d~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKkl~~~e~~~ 577 (582)
T KOG0062|consen 538 DEEFISSLCKELWVVEDGKVTPIEGGIDKYKKLLGAELRA 577 (582)
T ss_pred cHHHHhhcCceeEEEcCCcEEeeeccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988777754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-79 Score=690.27 Aligned_cols=480 Identities=40% Similarity=0.678 Sum_probs=371.8
Q ss_pred CCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc-ccCCCceEEEEeccccCCchhHH
Q psy16366 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 55 ~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~-~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
.++.+|+++|++++|+++++|+|+||+|.+|++||||||||||||||||+|+|... .+|.++.+.+++|++...+.+..
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 56889999999999999999999999999999999999999999999999999643 26888999999998765555555
Q ss_pred HHHHhccHHHHHHHHHHH-------HHhhc--------------cCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcC
Q psy16366 134 NIVLSADKNRVKLLKECS-------KLERD--------------ESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLG 192 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~-------~l~~~--------------~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg 192 (568)
+.++..+..+..++.+.. .+... .......++.++++++..++.+.++.++..+|.++|
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lg 332 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLS 332 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCC
Confidence 555544443333322211 11000 001113567788888888888999999999999999
Q ss_pred CCc-------------------------------cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceee
Q psy16366 193 FTT-------------------------------IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDII 232 (568)
Q Consensus 193 ~~~-------------------------------L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii 232 (568)
|.. |+||| .||.++++.++.|||+||||++|++.+||+|+
T Consensus 333 l~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~ 412 (718)
T PLN03073 333 FTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412 (718)
T ss_pred CChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 852 88899 29999999999999999999999999999999
Q ss_pred EEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhh
Q psy16366 233 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312 (568)
Q Consensus 233 ~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (568)
+|++|++..|.|+|+.|...+.++++.+.++|+.+++++++++++.........+.+....+.+...++...
T Consensus 413 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~-------- 484 (718)
T PLN03073 413 HLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHV-------- 484 (718)
T ss_pred EEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhh--------
Confidence 999999999999999999988888888899999999888887654322111100000000000000111000
Q ss_pred hcCCccceeeeecCCCC-CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 313 LEKPREYIVKFRFPNPP-YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 313 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
...+.+....+.+|.+. ..++++|+++||++.|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G 564 (718)
T PLN03073 485 DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG 564 (718)
T ss_pred hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 00000112234444432 23457999999999995456799999999999999999999999999999999999999999
Q ss_pred EEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 392 ~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|.+..+.+|||++|++...+....+....+... .+...+.++.+|+.|+|......+++.+|||||||||+|||+|+.
T Consensus 565 ~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 565 TVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred eEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 9998888889999998633322222222222221 234566788999999998544445889999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+|++|||||||||||+.++..+.+.|.++++|||+||||++++..+|+++|+|++|+++.+.|++++|++.+
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHh
Confidence 999999999999999999999999999988899999999999999999999999999988899999997764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-76 Score=664.31 Aligned_cols=474 Identities=30% Similarity=0.483 Sum_probs=351.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+++.+|+|+||+|.+|+++|||||||||||||||+|+|...|..+. ..+.|+.|+......+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 488999999999999999999999999999999999999999999999964332221 12345566432222334
Q ss_pred HHHHHhccHHHHHHHHHHH------------HHhh-cc---CCChHHHHHHHHHHHhc--------cCCCChHHHHHHHH
Q psy16366 133 VNIVLSADKNRVKLLKECS------------KLER-DE---SGDNQLRLTEVYDELKS--------IEADAAEPRARRIL 188 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~------------~l~~-~~---~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L 188 (568)
+..+.+.......+..+.. .+.. +. ......++..+++.+.. ++..+++++.|..|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 4444432211111110000 0000 00 01112233444443321 22346777777777
Q ss_pred HhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHH
Q psy16366 189 AGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQ 255 (568)
Q Consensus 189 ~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~ 255 (568)
+..-+.. |+||| .||.++|+++++|||+||||++|++.+||+|++|++|+++.|.|+|+.|...+..
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~ 240 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRAT 240 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHHHHHH
Confidence 6654443 88999 2999999999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCe
Q psy16366 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPV 335 (568)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (568)
....+.+.|+++++.+++++.+.........+.+....+.+...++... .+. .......+.|+.+...+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~ 312 (638)
T PRK10636 241 RLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELI---APA-----HVDNPFHFSFRAPESLPNPL 312 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc---ccc-----ccCCceeEecCCCccCCCce
Confidence 7777888899999888876655322111111111111111111111110 000 00123456666655556789
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+....++||++|++...+++.
T Consensus 313 l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCcc
Confidence 9999999999 677899999999999999999999999999999999999999999999876678999999754345566
Q ss_pred CCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 416 DTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 416 ~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
.++.+++.... ......++.+|+.|+|......++++.|||||||||+||++|+.+|+||||||||||||+.++..|.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 392 ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred chHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 67777654322 12345678899999997543445899999999999999999999999999999999999999999999
Q ss_pred HHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 495 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
+|.++++|||+||||++++..+|+++|+|++|+++.+.|++++|.+.
T Consensus 472 ~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~~ 518 (638)
T PRK10636 472 ALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQW 518 (638)
T ss_pred HHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999999998899999999653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-73 Score=642.54 Aligned_cols=470 Identities=25% Similarity=0.402 Sum_probs=344.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE--------EEeccccCCc-
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL--------YCEQEVEASD- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~--------~~~qe~~~~~- 129 (568)
+|+++|++++|+++++|+|+||+|.+|+++|||||||||||||||+|+|...| ..+.+. ++.|......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p--~~G~I~~~~~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL--DDGRIIYEQDLIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEeCCCCEEEEeccCCCCCCC
Confidence 68999999999999999999999999999999999999999999999997433 333332 3333221111
Q ss_pred hhHHHHHHhccHHHHHHHHHHHHHhh--------------------cc---CCChHHHHHHHHHHHhc-----cCCCChH
Q psy16366 130 DSAVNIVLSADKNRVKLLKECSKLER--------------------DE---SGDNQLRLTEVYDELKS-----IEADAAE 181 (568)
Q Consensus 130 ~~~~~~v~~~~~~~~~l~~~~~~l~~--------------------~~---~~~~~~~l~~v~~el~~-----~~~~~~~ 181 (568)
....+.+................+.. +. ......++.++++.+.. +...+++
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgG 160 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGG 160 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHH
Confidence 11222221111000000000000000 00 00112233444444321 2334667
Q ss_pred HHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 182 PRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 182 ~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
++.|..|+..-+.. |+||| .||.++|+++++|||+||||++|++.+||+|++|++|+++.|.|||+.
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 77777666554433 88999 299999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 328 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (568)
|...++.+...+..+++.+++.++++..+......+. +.+. ..+.+...++...... + ........+.|+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~-~~r~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~ 312 (635)
T PRK11147 241 YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRN-EGRVRALKALRRERSE-R-----REVMGTAKMQVEEA 312 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhH-HHHHHHHHHhhhhhcc-c-----cccCCceeEEeCCC
Confidence 9988887777777788887777766554332211110 0011 1111111111100000 0 00012345566655
Q ss_pred CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 329 PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 329 ~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
...+.++|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....|||++|++
T Consensus 313 ~~~~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~ 391 (635)
T PRK11147 313 SRSGKIVFEMENVNYQI-DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR 391 (635)
T ss_pred CCCCCceEEEeeeEEEE-CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc
Confidence 55567899999999999 56789999999999999999999999999999999999999999999986667899999986
Q ss_pred CCCCCCCCCHHHHHHHhc-CC--C--HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMKLF-NL--P--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~~-~~--~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
..+++..|+.+++.... .. . ...++.+|+.|++......+++.+|||||||||+||++|+.+|+||||||||||
T Consensus 392 -~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 392 -AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred -cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 35788889999875422 11 1 345778899999975444458899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEE-CCeEEEEcCCHHHHHH
Q psy16366 484 LDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALE-KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~-~g~i~~~~g~~~~~~~ 540 (568)
||+.++..|.++|.++++|||+||||++++..+|+++|+|+ +|+++.|.|+|++|.+
T Consensus 471 LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 471 LDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999999999999998 8999999999999964
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-70 Score=601.37 Aligned_cols=474 Identities=24% Similarity=0.410 Sum_probs=337.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-hh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD-DS 131 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~-~~ 131 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|...|..+. ..+.++.|+..... .+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 488999999999889999999999999999999999999999999999974332221 23556667643322 23
Q ss_pred HHHHHHhccHHHHHHHHHH---------------------HHHhhccCCChHHHHHHHHHHHh--------ccCCCChHH
Q psy16366 132 AVNIVLSADKNRVKLLKEC---------------------SKLERDESGDNQLRLTEVYDELK--------SIEADAAEP 182 (568)
Q Consensus 132 ~~~~v~~~~~~~~~l~~~~---------------------~~l~~~~~~~~~~~l~~v~~el~--------~~~~~~~~~ 182 (568)
..+.+.............. ..+..........++.++++.+. .+...+.++
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 3232221110000000000 00000000011223334444321 123457778
Q ss_pred HHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 183 RARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 183 ~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+.|..|+..-+.. |+||| .||.+++.+++.|||+||||++++..+||+|++|++|+++.|.|+|+.|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 8887776554433 88999 2888999888999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC
Q psy16366 250 KKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP 329 (568)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (568)
..+++.......+++++++++++++............+.+....+.+...... ...... .......+.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~ 313 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIK---LEEVKP----SSRQNPFIRFEQDK 313 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhcc---ccccCC----ccccCceeeCCCCC
Confidence 87776655556666777776666554322111000000000000000000000 000000 00000112233222
Q ss_pred CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC
Q psy16366 330 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 330 ~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
....++|+++|+++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+..+.++||++|++.
T Consensus 314 ~~~~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~ 392 (530)
T PRK15064 314 KLHRNALEVENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHA 392 (530)
T ss_pred CCCCceEEEEeeEEee-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccc
Confidence 2345789999999999 567899999999999999999999999999999999999999999999988889999999875
Q ss_pred CCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 410 EHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++...|+.+++.... ....+.++.+|+.+++......+++.+|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 393 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~ 472 (530)
T PRK15064 393 YDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDME 472 (530)
T ss_pred ccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 44666788888765322 1234567889999999533334588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++..+.+.|.++++|||+||||++++..+|+++++|.+|+++.+.|+++++.+
T Consensus 473 ~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 473 SIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999988999999999999999999999999999878899888754
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=599.24 Aligned_cols=478 Identities=25% Similarity=0.399 Sum_probs=340.4
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-h
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD-D 130 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~-~ 130 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|...|..+. ..+.|+.|+....+ .
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 689999999998 788999999999999999999999999999999999975432222 34678888764432 2
Q ss_pred hHHHHHHhccHHHHHHH---H---------------------HH-HHHhhccCCChHHHHHHHHHHHh------ccCCCC
Q psy16366 131 SAVNIVLSADKNRVKLL---K---------------------EC-SKLERDESGDNQLRLTEVYDELK------SIEADA 179 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~---~---------------------~~-~~l~~~~~~~~~~~l~~v~~el~------~~~~~~ 179 (568)
+..+.+........... . +. +.+......+...++.++++.+. .+...+
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LS 163 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLS 163 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcC
Confidence 33333321100000000 0 00 00000000001122333333321 123356
Q ss_pred hHHHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 180 AEPRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 180 ~~~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
.+++.|..++..-+.. |+||| .||.+++++++.|||+||||++++..+||+|++|++|++..|.|+|
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 7777777776654433 89999 2999999998899999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecC
Q psy16366 247 TLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP 326 (568)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (568)
+.|.++.......+..++++.++++++............ ..+. ..+.....+... ..+. .+ +....+.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~----~~-~~~~~~~~~ 313 (552)
T TIGR03719 244 SSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKS-KARLARYEELLS---QEFQ----KR-NETAEIYIP 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHhhhh---hccc----cc-CCCceeecC
Confidence 999887665555555566666555544333221100000 0000 000000000000 0000 00 001122333
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEec
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQ 406 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q 406 (568)
.+.....++++++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....|||++|
T Consensus 314 ~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q 392 (552)
T TIGR03719 314 PGPRLGDKVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ 392 (552)
T ss_pred CCCCCCCeEEEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeC
Confidence 3322346799999999999 567899999999999999999999999999999999999999999999866668999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC--HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP--YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++. .+++..|+.+++.... +.. ...++.+++.+++......+++.+|||||||||+||++|+.+|++|||||||
T Consensus 393 ~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 393 SRD-ALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred Ccc-ccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 862 3677889999875422 111 2345678999999754334578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC-CeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 482 NNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-KNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~-g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
+|||+.++..|.++|.++++|||+||||++++..+|+++|+|++ |++..+.|++++|.+...+.+++
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~~~~~~ 539 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRRLGE 539 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988999999999999999999999997 58888999999998776665554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-69 Score=599.74 Aligned_cols=473 Identities=23% Similarity=0.382 Sum_probs=340.2
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCc-
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASD- 129 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~- 129 (568)
.+|+++|++++|+ ++++|+|+||+|.+|++++|+|||||||||||++|+|...|..+. ..+.|+.|+....+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 3799999999998 789999999999999999999999999999999999975443222 34678888764433
Q ss_pred hhHHHHHHhccHHHHH----H-----------------HHHHHHHh----hccCCChHHHHHHHHHHHh------ccCCC
Q psy16366 130 DSAVNIVLSADKNRVK----L-----------------LKECSKLE----RDESGDNQLRLTEVYDELK------SIEAD 178 (568)
Q Consensus 130 ~~~~~~v~~~~~~~~~----l-----------------~~~~~~l~----~~~~~~~~~~l~~v~~el~------~~~~~ 178 (568)
.+..+.+......... + +.....+. .....+...++.++++.+. .++..
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~L 164 (556)
T PRK11819 85 KTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKL 164 (556)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhc
Confidence 2333332211000000 0 00000000 0000011223333433332 12345
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
+++++.+..|+..-+.. |+||| .||.++++.++.|||+||||++++..+||+|++|++|+++.|.|+
T Consensus 165 SgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~ 244 (556)
T PRK11819 165 SGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGN 244 (556)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCC
Confidence 77788887776654443 88999 299999999989999999999999999999999999999889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeec
Q psy16366 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325 (568)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (568)
|+.|.+.+........+.+++++++++++........... ..+ ...+.+...+.... .+.. .+ ....+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~---~~~~---~~--~~~~~~~ 314 (556)
T PRK11819 245 YSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAK-SKARLARYEELLSE---EYQK---RN--ETNEIFI 314 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHH-HHHHHHHHHHhhcc---cccc---cC--CCceeec
Confidence 9999887766555556666666666554443322110000 000 00000000011000 0000 00 0112223
Q ss_pred CCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 326 ~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
+......+++|+++||++.| +++++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+....+|||++
T Consensus 315 ~~~~~~~~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~ 393 (556)
T PRK11819 315 PPGPRLGDKVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVD 393 (556)
T ss_pred CCCCCCCCeEEEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEe
Confidence 33322345799999999999 56789999999999999999999999999999999999999999999986666899999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
|++ ..+++..|+.+++.... +. ....++.+|+.+++......+++.+|||||||||+|||+|+.+|+|||||||
T Consensus 394 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 394 QSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred Cch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 986 24677889999875321 11 2334567899999975333457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC-CeEEEEcCCHHHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK-KNIRKFNGDFDDYREKL 542 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~-g~i~~~~g~~~~~~~~~ 542 (568)
|+|||+.++..|.++|.++.+|||+||||++++..+|+++++|++ |++..+.|++++|.+..
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 999999999999999999988999999999999999999999996 78888899999997654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=546.70 Aligned_cols=414 Identities=22% Similarity=0.329 Sum_probs=290.5
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE----------eccccCC-
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC----------EQEVEAS- 128 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~----------~qe~~~~- 128 (568)
|+++|++++|+++++|+|+||+|.+|+++||+|||||||||||++|+|....-|..+.+.+. .|+....
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998889999999999999999999999999999999999963101344444432 1110000
Q ss_pred -------------------chhH-------HHHHHhccHHHH---HHHHHHHH-HhhccCC--ChHHHHHHHHHHHh---
Q psy16366 129 -------------------DDSA-------VNIVLSADKNRV---KLLKECSK-LERDESG--DNQLRLTEVYDELK--- 173 (568)
Q Consensus 129 -------------------~~~~-------~~~v~~~~~~~~---~l~~~~~~-l~~~~~~--~~~~~l~~v~~el~--- 173 (568)
.... +..+.+...... ...+.... +...... ....++.++.+.+.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 0000 000011000000 00000000 0000000 01123333443321
Q ss_pred ----ccCCCChHHHHHHHHHhcCCCc----cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceee
Q psy16366 174 ----SIEADAAEPRARRILAGLGFTT----IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDII 232 (568)
Q Consensus 174 ----~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii 232 (568)
.+...++++++|..++..-+.. |+|||. |+ .++.++++.|||+||||++++..+||+|+
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 2344677788887776654433 889991 54 44444557899999999999999999999
Q ss_pred EEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhh
Q psy16366 233 HLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKEL 312 (568)
Q Consensus 233 ~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (568)
+|++|++.. .|+++.+...... .+. . .
T Consensus 241 ~l~~G~i~~-~g~~~~~~~~~~~-----------------~~~---------------~---------~----------- 267 (520)
T TIGR03269 241 WLENGEIKE-EGTPDEVVAVFME-----------------GVS---------------E---------V----------- 267 (520)
T ss_pred EEeCCEEee-ecCHHHHHHHHHh-----------------hch---------------h---------h-----------
Confidence 999999875 5777765321000 000 0 0
Q ss_pred hcCCccceeeeecCCCCCCCCCeEEEEeeEEEeCC----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 313 LEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPG----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
..+ .+...+.++|+++||+++|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|
T Consensus 268 -~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p 336 (520)
T TIGR03269 268 -EKE----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP 336 (520)
T ss_pred -ccc----------cccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 000 000113468999999999942 25799999999999999999999999999999999999999
Q ss_pred CccEEEEC-C-----------------CeeEEEEecCCCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHHhCCCCC
Q psy16366 389 NKGELRKS-P-----------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPS 444 (568)
Q Consensus 389 ~~G~i~~~-~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~--~~~----~~~~~~~L~~~~l~~ 444 (568)
++|+|.++ . +.+++|++|++. +++..|+.+++.... ..+ ...+.++|+.++|..
T Consensus 337 ~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 337 TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred CCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999873 1 135899999863 777889998875321 222 134567899999975
Q ss_pred c----cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhh
Q psy16366 445 Y----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRET 516 (568)
Q Consensus 445 ~----~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~ 516 (568)
. ...+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|.+ ++.|||+||||++++..+
T Consensus 415 ~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ 494 (520)
T TIGR03269 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494 (520)
T ss_pred ccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHh
Confidence 2 23457899999999999999999999999999999999999999999999854 467999999999999999
Q ss_pred CceEEEEECCeEEEEcCCHHHHHH
Q psy16366 517 DCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 517 ~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+++++|++|+++ ..|+.+++.+
T Consensus 495 ~d~i~~l~~G~i~-~~g~~~~~~~ 517 (520)
T TIGR03269 495 CDRAALMRDGKIV-KIGDPEEIVE 517 (520)
T ss_pred CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999986 4577666543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-64 Score=533.27 Aligned_cols=439 Identities=20% Similarity=0.279 Sum_probs=304.8
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC--CCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP--SSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip--~~~~i~~~~qe~~~~~~~~ 132 (568)
.++|+|++++|... .+++|+||+|.+||.+||||+|||||||++++|.|...+-+ ..+.+.+.++++.......
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 78999999998532 59999999999999999999999999999999999643211 2456666665543322211
Q ss_pred H--------HHHHhccHHH----HHHHHHHHHHhhccC-CCh---HHHHHHHHHHHh---------ccCCCChHHHHHHH
Q psy16366 133 V--------NIVLSADKNR----VKLLKECSKLERDES-GDN---QLRLTEVYDELK---------SIEADAAEPRARRI 187 (568)
Q Consensus 133 ~--------~~v~~~~~~~----~~l~~~~~~l~~~~~-~~~---~~~l~~v~~el~---------~~~~~~~~~~~~~~ 187 (568)
. ..++|..... ..+-.+..+...... ... ..+..++++++. -....++++++|.+
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~ 164 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVM 164 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHH
Confidence 1 1111111110 011111111111000 001 222222333221 11123666777776
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
++.--... ++|||. .|.++.++.+.++|+||||++.+.++||||++|++|+++..+..-+.|.
T Consensus 165 iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 165 IAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 65432222 889992 5666777889999999999999999999999999999998755444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCC
Q psy16366 251 KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPY 330 (568)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (568)
+.... | ++.. .. ..|. +.. .........++ .
T Consensus 245 ~p~hp--------Y----------------------------T~~L----l~----a~p~-~~~-~~~~~~~~~~~---~ 275 (539)
T COG1123 245 NPQHP--------Y----------------------------TRGL----LA----AVPR-LGD-EKIIRLPRRGP---L 275 (539)
T ss_pred ccCCc--------c----------------------------cHHH----Hh----hCCC-ccc-ccccccccccc---c
Confidence 21100 0 0000 00 0000 000 00000000000 1
Q ss_pred CCCCeEEEEeeEEEeCC------C----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---
Q psy16366 331 LPPPVLGLHDVTFGYPG------G----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~------~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--- 397 (568)
...|+++++||++.|.. . ..+++||||+|.+||++||||++|||||||.|+|+|+++|++|.|.+..
T Consensus 276 ~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 276 RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 15789999999999952 1 2589999999999999999999999999999999999999999998643
Q ss_pred ----------CeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHH
Q psy16366 398 ----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQK 459 (568)
Q Consensus 398 ----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 459 (568)
+.++.++||+|...+++.+|+.+.+..... .. .+.+.++|+.+||+.....++|++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 247899999999999999999887754321 11 134667799999997544568899999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEc---
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN--- 532 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~--- 532 (568)
|||+|||||+.+|++||+||||+.||+..+..+.++|.+ ++.|.||||||+.++..+||+|++|.+|++++..
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~ 515 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTE 515 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999988888865 4789999999999999999999999999998752
Q ss_pred ----CCHHHHHHHHHHHH
Q psy16366 533 ----GDFDDYREKLLTSL 546 (568)
Q Consensus 533 ----g~~~~~~~~~~~~~ 546 (568)
.+.++|.+.++.++
T Consensus 516 ~v~~~p~h~Ytr~L~~av 533 (539)
T COG1123 516 KVFENPQHPYTRKLLAAV 533 (539)
T ss_pred HHhcCCCChHHHHHHHhc
Confidence 23455666665554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-63 Score=546.94 Aligned_cols=422 Identities=20% Similarity=0.280 Sum_probs=292.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCCchh
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASDDS 131 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~~~~ 131 (568)
+|+++|++++|++ +++|+++||+|.+||++||+||||||||||||+|+|...|. |..+.+.+.++++......
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 6999999999963 57999999999999999999999999999999999975331 1345555544443221110
Q ss_pred H--------HHHHHhccHH-HHHHHHHHHHHh---h----ccCCChHHHHHHHHHHHh----------ccCCCChHHHHH
Q psy16366 132 A--------VNIVLSADKN-RVKLLKECSKLE---R----DESGDNQLRLTEVYDELK----------SIEADAAEPRAR 185 (568)
Q Consensus 132 ~--------~~~v~~~~~~-~~~l~~~~~~l~---~----~~~~~~~~~l~~v~~el~----------~~~~~~~~~~~~ 185 (568)
. +..+.+.... ..........+. . ........++.++.+.+. .+...++++++|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 0 1111111100 000000000000 0 000011233344444332 123457778888
Q ss_pred HHHHhcCCCc----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 186 RILAGLGFTT----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 186 ~~L~~lg~~~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..++..-... |+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++..++++ +.
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~-~~ 243 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRA-AT 243 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCH-HH
Confidence 7776654433 889992 55555543 478999999999999999999999999999876443 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCC
Q psy16366 249 FKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNP 328 (568)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (568)
+...... .. .+. ... . .+ .. .+ .+.
T Consensus 244 ~~~~~~~---~~----------~~~------------------~~~-----~-------~~-~~--~~--------~~~- 268 (529)
T PRK15134 244 LFSAPTH---PY----------TQK------------------LLN-----S-------EP-SG--DP--------VPL- 268 (529)
T ss_pred HhhCCCC---HH----------HHH------------------HHH-----h-------Cc-cc--cc--------ccc-
Confidence 2110000 00 000 000 0 00 00 00 000
Q ss_pred CCCCCCeEEEEeeEEEeCC----------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-
Q psy16366 329 PYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP- 397 (568)
Q Consensus 329 ~~~~~~~l~~~~v~~~y~~----------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~- 397 (568)
...++++|+++|+++.|+. ++++|+|+||+|++|++++|+||||||||||+|+|+|++ |++|+|.++.
T Consensus 269 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~ 347 (529)
T PRK15134 269 PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQ 347 (529)
T ss_pred CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCE
Confidence 1124568999999999941 357999999999999999999999999999999999998 4899998643
Q ss_pred -------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC--CC----HHHHHHHHHhCCCCCccccCCCCCCC
Q psy16366 398 -------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN--LP----YEKSRRQLGMFGLPSYAHTIPIRDLS 455 (568)
Q Consensus 398 -------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LS 455 (568)
+.+++|++|++...+++..|+.+++... .. .+ .+.+.++|+.+++......+++.+||
T Consensus 348 ~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 427 (529)
T PRK15134 348 PLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS 427 (529)
T ss_pred EccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence 2358999999744577888998877532 11 22 23467889999997422345789999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
|||||||+|||||+.+|++|||||||+|||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++ .
T Consensus 428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~ 506 (529)
T PRK15134 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV-E 506 (529)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-E
Confidence 99999999999999999999999999999999999999999753 679999999999999999999999999986 4
Q ss_pred cCCHHHH
Q psy16366 532 NGDFDDY 538 (568)
Q Consensus 532 ~g~~~~~ 538 (568)
.|+.+++
T Consensus 507 ~~~~~~~ 513 (529)
T PRK15134 507 QGDCERV 513 (529)
T ss_pred EcCHHHH
Confidence 5666655
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=541.14 Aligned_cols=420 Identities=19% Similarity=0.247 Sum_probs=290.5
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|...|.|..+.+.+.+.++.......
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 369999999999988999999999999999999999999999999999996432123555555444332111000
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-cc-C--C--C---hHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-DE-S--G--D---NQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~~-~--~--~---~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+.+.. ....-+...+.+.. .. . . . ...++.++++.+.. +...+.++++|..++..-+..
T Consensus 84 i~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 84 IAIIHQEL-ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred eEEEEecc-ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 01111110 00000000000000 00 0 0 0 01233444444321 233577788887776554433
Q ss_pred ---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.+++.+ .+.|||+||||++++..+||+|++|++|+++.+ |+.+.+... .
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~~------~- 234 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGT-RPAAGMTED------D- 234 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeee-cccccCCHH------H-
Confidence 889992 44444433 378999999999999999999999999998764 333222100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEE
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLH 339 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 339 (568)
.++.+. +. ..... +|. +...+.++|+++
T Consensus 235 ---------~~~~~~--~~----------------------------~~~~~------------~~~~~~~~~~~~l~~~ 263 (506)
T PRK13549 235 ---------IITMMV--GR----------------------------ELTAL------------YPREPHTIGEVILEVR 263 (506)
T ss_pred ---------HHHHhh--Cc----------------------------Ccccc------------ccccccCCCCceEEEe
Confidence 000000 00 00000 000 011235689999
Q ss_pred eeEEEeC--CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECC------------CeeEEEE
Q psy16366 340 DVTFGYP--GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSP------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~--~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~------------~~~i~~~ 404 (568)
|+++.|+ +++++|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++. +..++|+
T Consensus 264 ~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 264 NLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred cCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 9999994 24579999999999999999999999999999999999998 5999998643 1348999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh----c-C---CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL----F-N---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~----~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++. ..+++..|+.+++... + . .. .+.+.++++.+++......+++.+|||||||||+|||||+.+
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 99863 2467778988876421 1 1 12 134678899999963233457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|.+|+++ ..++.+++
T Consensus 424 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 424 PKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEeccccC
Confidence 9999999999999999999998887654 679999999999999999999999999986 45566655
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=541.98 Aligned_cols=446 Identities=17% Similarity=0.185 Sum_probs=290.4
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc--------
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE-------- 126 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~-------- 126 (568)
+|+++|++++|++ .++|+|+||+|.+||++||||+||||||||+++|+|... |..+.+.+.+..+.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccccccc
Confidence 6999999999962 479999999999999999999999999999999999743 23344433222110
Q ss_pred CC--chh--------HHHHHHhccH-HH---HHHHHHHHH-Hh---hccCCChHHHHHHHHHHHh----------ccCCC
Q psy16366 127 AS--DDS--------AVNIVLSADK-NR---VKLLKECSK-LE---RDESGDNQLRLTEVYDELK----------SIEAD 178 (568)
Q Consensus 127 ~~--~~~--------~~~~v~~~~~-~~---~~l~~~~~~-l~---~~~~~~~~~~l~~v~~el~----------~~~~~ 178 (568)
.. ... .+..+++... .. ....+.... +. .....+...+..++++.+. .+...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 00 000 0011111100 00 000000000 00 0000001123333333332 12335
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++++|..++..-+.. ++|||. .|.++.++.+.|||+||||++++..+||||++|++|+++.
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 77778887776543333 889992 2333333458899999999999999999999999999985
Q ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcccee
Q psy16366 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 321 (568)
Q Consensus 242 ~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (568)
.|+++.+..... ..|. +.+.......... ... ... ...+.... ..+. ...
T Consensus 250 -~g~~~~~~~~~~-------~~~~------~~l~~~~~~~~~~-----------~~~-~~~--~~~~~~~~-~~~~-~~~ 299 (623)
T PRK10261 250 -TGSVEQIFHAPQ-------HPYT------RALLAAVPQLGAM-----------KGL-DYP--RRFPLISL-EHPA-KQE 299 (623)
T ss_pred -cCCHHHhhcCCC-------Chhh------hhhhhccCccccc-----------ccc-cCC--cccccccc-cccc-ccC
Confidence 577665432100 0000 0000000000000 000 000 00000000 0000 000
Q ss_pred eeecCCCCCCCCCeEEEEeeEEEeCC----------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 322 KFRFPNPPYLPPPVLGLHDVTFGYPG----------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~v~~~y~~----------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
...++.......++|+++||++.|+. ...+|+||||+|.+|++++|+||||||||||+++|+|+++|++|
T Consensus 300 ~~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G 379 (623)
T PRK10261 300 PPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG 379 (623)
T ss_pred cccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc
Confidence 00011111123579999999999941 24699999999999999999999999999999999999999999
Q ss_pred EEEECC--------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCccccC
Q psy16366 392 ELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSYAHTI 449 (568)
Q Consensus 392 ~i~~~~--------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~~~~~ 449 (568)
+|.++. +.+|+|++|++...+++.+|+.+++... .+. .. +.+.++|+.+||......+
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 459 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR 459 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC
Confidence 998643 2369999999755688888998876532 222 21 3467889999996333345
Q ss_pred CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 450 ~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|.+ ++.|||+||||++++..+||++++|.+
T Consensus 460 ~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~ 539 (623)
T PRK10261 460 YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL 539 (623)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 7899999999999999999999999999999999999999999999854 467999999999999999999999999
Q ss_pred CeEEEEcCCHHH
Q psy16366 526 KNIRKFNGDFDD 537 (568)
Q Consensus 526 g~i~~~~g~~~~ 537 (568)
|+++. .|+.++
T Consensus 540 G~iv~-~g~~~~ 550 (623)
T PRK10261 540 GQIVE-IGPRRA 550 (623)
T ss_pred CEEEE-ecCHHH
Confidence 99975 455444
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-62 Score=536.62 Aligned_cols=412 Identities=17% Similarity=0.239 Sum_probs=286.8
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++.......
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCC
Confidence 36999999999998899999999999999999999999999999999999743 33445544443332111100
Q ss_pred HHHHHhccHH--HHHHHHHHHHHhhcc----CC----C---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC
Q psy16366 133 VNIVLSADKN--RVKLLKECSKLERDE----SG----D---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 133 ~~~v~~~~~~--~~~l~~~~~~l~~~~----~~----~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg 192 (568)
+..+.+.... .....+.. .+.... .+ . ...+..++.+.+. .+...+.++++|..++..-
T Consensus 82 i~~v~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred eEEEeecccccCCCcHHHHh-hhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence 0111110000 00000000 000000 00 0 1123333443332 1234577788887776544
Q ss_pred CCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHH
Q psy16366 193 FTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQK 256 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~ 256 (568)
+.. |+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++. +.|+++.+...
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~~---- 235 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVSND---- 235 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCCHH----
Confidence 333 889992 44444433 3789999999999999999999999999996 45666544210
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCe
Q psy16366 257 RKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPV 335 (568)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 335 (568)
+. ...+ .+.. . ....... .+. .....+++
T Consensus 236 --~~----------~~~~--~~~~--------------------~----~~~~~~~------------~~~~~~~~~~~~ 265 (510)
T PRK09700 236 --DI----------VRLM--VGRE--------------------L----QNRFNAM------------KENVSNLAHETV 265 (510)
T ss_pred --HH----------HHHh--cCCC--------------------c----ccccccc------------ccccccCCCCcE
Confidence 00 0000 0000 0 0000000 000 01123568
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++|+++.| + .+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.. +..++|
T Consensus 266 l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 266 FEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 9999999987 3 389999999999999999999999999999999999999999998743 135899
Q ss_pred EecCCC-CCCCCCCCHHHHHHHhc-----------CC-C----HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHH
Q psy16366 404 FDQHSG-EHLFPDDTPCEYLMKLF-----------NL-P----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 404 ~~q~~~-~~l~~~~~~~e~l~~~~-----------~~-~----~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++|++. ..+++..|+.+++.... +. . ...+.++|+.+++. ... .+++.+|||||||||+||
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQKVLIS 421 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHHHHHH
Confidence 999852 35778889998764311 11 1 12356789999996 444 458899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
|+|+.+|+||||||||+|||+.+...+.++|+++ +.|||+||||++++..+||++++|.+|+++..
T Consensus 422 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred HHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999998765 67999999999999999999999999998754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=533.07 Aligned_cols=411 Identities=19% Similarity=0.261 Sum_probs=284.0
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|...|.|..+.+.+.++++....... +.
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 7899999999888999999999999999999999999999999999996432123555554443332111000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhh-cc-CC---C---hHHHHHHHHHHHhc--------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 135 IVLSADKN--RVKLLKECSKLER-DE-SG---D---NQLRLTEVYDELKS--------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~-~~-~~---~---~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
.+.+.... .....+.. .+.. .. .. . ...+..++.+.+.. +...++++++|..++..-+..
T Consensus 82 ~v~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 82 IIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEeeccccCCCCcHHHHH-HhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 11111000 00000000 0000 00 00 0 01233334443321 234577888887776543332
Q ss_pred ---cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.++++ +.+.|||+||||++++..+||+|++|++|+++.+... +.+... .
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~-~~~~~~------~- 232 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDM-STMSED------D- 232 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCc-ccCCHH------H-
Confidence 889992 5555544 3478999999999999999999999999999865332 211100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEE
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLH 339 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 339 (568)
....+. + . ..... ++. +...++++|+++
T Consensus 233 ---------~~~~~~--~------------------------~----~~~~~------------~~~~~~~~~~~~l~~~ 261 (500)
T TIGR02633 233 ---------IITMMV--G------------------------R----EITSL------------YPHEPHEIGDVILEAR 261 (500)
T ss_pred ---------HHHHHh--C------------------------c----ccccc------------ccccccCCCCceEEEe
Confidence 000000 0 0 00000 000 011234689999
Q ss_pred eeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC------------CeeEEEE
Q psy16366 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~------------~~~i~~~ 404 (568)
|+++.|++ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++| ++|+|.++. +.+++|+
T Consensus 262 ~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 262 NLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred CCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 99999932 35799999999999999999999999999999999999995 899998643 2358999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh----c----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL----F----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~----~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++. ..+++..|+.+++... . ... ...+.++|+.+++......+++.+|||||||||+|||||+.+
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 99863 2467788888876321 1 112 134678899999974333457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 422 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 422 PRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999988877654 6799999999999999999999999999864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=530.63 Aligned_cols=421 Identities=17% Similarity=0.206 Sum_probs=287.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV----- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~----- 133 (568)
+|+++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|... |..+.+.+.+.++........
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCE
Confidence 6999999999998899999999999999999999999999999999999643 334444443333221110000
Q ss_pred HHHHhccHHHHHHHHHHHHHhh-ccC-CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLER-DES-GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~-~~~-~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
..+.+.. ....-+...+.+.. ... .....++.++.+.+. .+...+.++++|..++..-... |+|||
T Consensus 89 ~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 89 YLVPQEP-LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred EEEeccC-ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 0000000 00000000000000 000 001122333333322 1234577788887776543332 88999
Q ss_pred h---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy16366 201 S---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE 268 (568)
Q Consensus 201 n---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~ 268 (568)
. ++.+++++ .+.|||+||||++++..+||+|++|++|+++. .|+++.+..... .
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~~~~------~------- 233 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL-SGKTADLSTDDI------I------- 233 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecChHHcCHHHH------H-------
Confidence 2 55555543 37899999999999999999999999999975 678776542100 0
Q ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC---CCCCCCCeEEEEeeEEEe
Q psy16366 269 KQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN---PPYLPPPVLGLHDVTFGY 345 (568)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~v~~~y 345 (568)
..+...... . ... .. .. ..+.+|. +....+++|+++|+++
T Consensus 234 ---~~~~~~~~~-~-----------------~~~-----~~-------~~--~~~~~~~~~~~~~~~~~~l~~~~l~~-- 276 (510)
T PRK15439 234 ---QAITPAARE-K-----------------SLS-----AS-------QK--LWLELPGNRRQQAAGAPVLTVEDLTG-- 276 (510)
T ss_pred ---HHHhCcccc-c-----------------ccc-----cc-------cc--ccccccccccccCCCCceEEEeCCCC--
Confidence 000000000 0 000 00 00 0001111 1112456899999983
Q ss_pred CCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEEEEecCCC-CCC
Q psy16366 346 PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIGKFDQHSG-EHL 412 (568)
Q Consensus 346 ~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~~~~q~~~-~~l 412 (568)
.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++.. ..|+|++|++. ..+
T Consensus 277 ----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l 352 (510)
T PRK15439 277 ----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGL 352 (510)
T ss_pred ----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCc
Confidence 2599999999999999999999999999999999999999999986531 35899999852 346
Q ss_pred CCCCCHHHHHHHh----cC--C-C---HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 413 FPDDTPCEYLMKL----FN--L-P---YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 413 ~~~~~~~e~l~~~----~~--~-~---~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++..|+.+++... .. . . .+.+.++|+.++|. ...+ +++.+|||||||||+|||||+.+|+||||||||
T Consensus 353 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt 431 (510)
T PRK15439 353 YLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE-QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPT 431 (510)
T ss_pred cCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCcc-CccccCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence 7778887775321 01 1 1 12466789999997 4444 578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||+.++..+.+.|+++ +.|||+||||++++..+||++|+|++|+++. .++.+++.
T Consensus 432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~-~~~~~~~~ 491 (510)
T PRK15439 432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG-ALTGAAIN 491 (510)
T ss_pred cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EEccccCC
Confidence 999999999999998764 6799999999999999999999999999974 45555543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=528.51 Aligned_cols=418 Identities=17% Similarity=0.226 Sum_probs=285.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh----HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS----AVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~----~~~ 134 (568)
+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.++++...... .+.
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCHHHHHHHhc
Confidence 6999999999988889999999999999999999999999999999999643 3445555444433211111 011
Q ss_pred HHHhccHHHHHHHHH------HHHHhhccCC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----c
Q psy16366 135 IVLSADKNRVKLLKE------CSKLERDESG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----I 196 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~------~~~l~~~~~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L 196 (568)
.+.+... ..++.. ......+... ....+..++.+.+. .+...++++++|..++..-+.. |
T Consensus 81 ~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 81 DEWQRNN--TDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eeccCcc--hhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1221110 000000 0000000000 11223344444331 2345678888887776554432 8
Q ss_pred CCCc---------hHHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHH
Q psy16366 197 YIPS---------SRVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264 (568)
Q Consensus 197 ~~eP---------n~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~ 264 (568)
+||| .++.++++++ +.|||+||||++++..+||+|++|++|+++.+ |+.+.+....
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~~~~----------- 226 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAET-GEREEILQQA----------- 226 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEe-CCHHHHhcch-----------
Confidence 8999 2555555544 68999999999999999999999999999764 5554432100
Q ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEeeEEE
Q psy16366 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFG 344 (568)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 344 (568)
.+..+.. ...... ...+ . .... ..+.......++|+++|+++.
T Consensus 227 -----~~~~~~~---------------------~~~~~~--~~~~-~----~~~~----~~~~~~~~~~~~l~~~~l~~~ 269 (490)
T PRK10938 227 -----LVAQLAH---------------------SEQLEG--VQLP-E----PDEP----SARHALPANEPRIVLNNGVVS 269 (490)
T ss_pred -----hhhhhhh---------------------hhccCc--cccC-c----cccc----ccccccCCCCceEEEeceEEE
Confidence 0000000 000000 0000 0 0000 000001124578999999999
Q ss_pred eCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC------------CeeEEEEecCCCCC
Q psy16366 345 YPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP------------RLRIGKFDQHSGEH 411 (568)
Q Consensus 345 y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~------------~~~i~~~~q~~~~~ 411 (568)
| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+.+| ++|+|.++. +..++|++|++...
T Consensus 270 ~-~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 348 (490)
T PRK10938 270 Y-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLD 348 (490)
T ss_pred E-CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhh
Confidence 9 567799999999999999999999999999999999998876 699997643 23589999986422
Q ss_pred CCCCCCHHHHHHHh-c---C----CC---HHHHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 412 LFPDDTPCEYLMKL-F---N----LP---YEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 412 l~~~~~~~e~l~~~-~---~----~~---~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.....++.+++... . . .. .+.+.++++.++|.. ..+ +++.+|||||||||+|||||+.+|+||||||
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 349 YRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTAD-APFHSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred cccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhcc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 22234565554321 1 1 11 235678899999986 444 5889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---C-ceEEEEecchHHHHh-hCceEEEEECCeEEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY---Q-GGVILVSHDERLIRE-TDCELWALEKKNIRKF 531 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~-~~~~i~~l~~g~i~~~ 531 (568)
||+|||+.++..+.++|.++ + .|||+||||++++.. +|+++++|++|+++.+
T Consensus 428 Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999875 3 369999999999987 5899999999998765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-60 Score=522.39 Aligned_cols=415 Identities=19% Similarity=0.247 Sum_probs=283.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch-hH----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~-~~----~ 133 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... .. +
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCE
Confidence 6899999999998899999999999999999999999999999999999643 334444443333321110 00 0
Q ss_pred HHHHhccHHHHHHHHHHHHHhh--c-c-CC--C---hHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc--
Q psy16366 134 NIVLSADKNRVKLLKECSKLER--D-E-SG--D---NQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~--~-~-~~--~---~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
..+.+.. ....-+...+.+.. . . .+ . ...++.++.+.+.. +...+++++++..++..-...
T Consensus 82 ~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 82 AIIYQEL-HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEech-hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001100 00000000000000 0 0 00 0 11233334443321 233577788887776543332
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHH
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~ 261 (568)
|+|||. ++.+++++ .+.|||+||||++++..+||+|++|++|+++.....+.... .. .
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~---~~---~-- 232 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD---RD---Q-- 232 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC---HH---H--
Confidence 889992 55555543 47899999999999999999999999999874322221100 00 0
Q ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEee
Q psy16366 262 KEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDV 341 (568)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 341 (568)
..+.+. + . .... .. .. .+...++++++++|+
T Consensus 233 --------~~~~~~--~------------------------~----~~~~----~~------~~-~~~~~~~~~l~~~~~ 263 (501)
T PRK11288 233 --------LVQAMV--G------------------------R----EIGD----IY------GY-RPRPLGEVRLRLDGL 263 (501)
T ss_pred --------HHHHhc--C------------------------C----Cccc----cc------cc-cccCCCCcEEEEecc
Confidence 000000 0 0 0000 00 00 011123467999999
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCCC
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHSG 409 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~~ 409 (568)
++. .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++.
T Consensus 264 ~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 338 (501)
T PRK11288 264 KGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK 338 (501)
T ss_pred ccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHh
Confidence 832 489999999999999999999999999999999999999999998753 135899999863
Q ss_pred -CCCCCCCCHHHHHHHhc-------C--CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 410 -EHLFPDDTPCEYLMKLF-------N--LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 410 -~~l~~~~~~~e~l~~~~-------~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
..+++..|+.+++.... + .. .+.++++|+.+++......+++.+|||||||||+|||+|+.+|+||
T Consensus 339 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 339 AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred hCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence 34677789888764210 1 01 1346788999999533334588999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.++|.+ .+.|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 419 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 419 LLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG-ELAREQAT 484 (501)
T ss_pred EEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE-EEccccCC
Confidence 99999999999999999998854 46799999999999999999999999999874 55555554
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-60 Score=521.50 Aligned_cols=411 Identities=19% Similarity=0.254 Sum_probs=284.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~ 133 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++....... +
T Consensus 4 ~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCE
Confidence 6899999999998899999999999999999999999999999999999743 34455554444332111000 0
Q ss_pred HHHHhccHHHHHHHHHHHHHhh-cc-----C-CCh---HHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc-
Q psy16366 134 NIVLSADKNRVKLLKECSKLER-DE-----S-GDN---QLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~-~~-----~-~~~---~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..+.+.. .....+...+.+.. .. . ... ..+..++.+.+.. +...+.+++++..++..-+..
T Consensus 82 ~~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 82 GIIHQEL-NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEcch-hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 0111100 00000000000000 00 0 001 1233344444321 234577788887776544333
Q ss_pred ---cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHH
Q psy16366 196 ---IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKEL 260 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~ 260 (568)
|+|||. ++.++++ ..+.|||+||||++++..+||+|++|++|+++.. |..+..... .
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~~------~- 232 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAE-REVADLTED------S- 232 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-cCcCcCCHH------H-
Confidence 889992 4443333 3478999999999999999999999999999754 332221100 0
Q ss_pred HHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEEEEe
Q psy16366 261 TKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHD 340 (568)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (568)
..... .+ . .... ..+ .++. ...+++++++|
T Consensus 233 ---------~~~~~--~~------------------------~----~~~~--~~~-------~~~~--~~~~~~l~~~~ 262 (501)
T PRK10762 233 ---------LIEMM--VG------------------------R----KLED--QYP-------RLDK--APGEVRLKVDN 262 (501)
T ss_pred ---------HHHHh--cC------------------------C----Cccc--ccc-------cccc--CCCCcEEEEeC
Confidence 00000 00 0 0000 000 0011 12346899999
Q ss_pred eEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCC
Q psy16366 341 VTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHS 408 (568)
Q Consensus 341 v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~ 408 (568)
+++ .+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+||++|++
T Consensus 263 l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 263 LSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred ccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 984 369999999999999999999999999999999999999999998753 13599999986
Q ss_pred C-CCCCCCCCHHHHHHHh----c----C-CC----HHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 409 G-EHLFPDDTPCEYLMKL----F----N-LP----YEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 409 ~-~~l~~~~~~~e~l~~~----~----~-~~----~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
. ..+++..|+.+++... . + .. .+.++++|+.+++. ... .+++.+|||||||||+|||||+.+|+
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 3 2467788998876421 1 1 11 23467889999995 444 45889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++. .++.+++
T Consensus 416 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 482 (501)
T PRK10762 416 VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG-EFTREQA 482 (501)
T ss_pred EEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE-EeccccC
Confidence 99999999999999999999999876 4699999999999999999999999999863 4444444
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=513.34 Aligned_cols=412 Identities=19% Similarity=0.242 Sum_probs=278.1
Q ss_pred EeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch-hH----HHHH
Q psy16366 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-SA----VNIV 136 (568)
Q Consensus 62 i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~-~~----~~~v 136 (568)
++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.++++..... .. +..+
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 4689999998899999999999999999999999999999999999643 334455444433321110 00 0001
Q ss_pred HhccHHHHHHHHHHHHHhh----ccC--CCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----c
Q psy16366 137 LSADKNRVKLLKECSKLER----DES--GDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----I 196 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~----~~~--~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L 196 (568)
.+.. ....-+...+.+.. ... ... ..+..++.+.+. .+...+++++++..++..-+.. +
T Consensus 79 ~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lll 157 (491)
T PRK10982 79 HQEL-NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVI 157 (491)
T ss_pred eccc-ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 1100 00000000000000 000 000 122333333332 1233577788887776543332 8
Q ss_pred CCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHH
Q psy16366 197 YIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEY 264 (568)
Q Consensus 197 ~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~ 264 (568)
+|||. ++.+++++ .+.|||+||||.+++..+||+|++|++|+++.. |+-+.... .
T Consensus 158 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~---~--------- 224 (491)
T PRK10982 158 MDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT-QPLAGLTM---D--------- 224 (491)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee-cChhhCCH---H---------
Confidence 89992 55555543 478999999999999999999999999999754 32221100 0
Q ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCC-CCCCCCCeEEEEeeEE
Q psy16366 265 ELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPN-PPYLPPPVLGLHDVTF 343 (568)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~v~~ 343 (568)
.....+. + . .... .++. .....+++++++|+++
T Consensus 225 ----~~~~~~~--~------------------------~----~~~~------------~~~~~~~~~~~~~i~~~~l~~ 258 (491)
T PRK10982 225 ----KIIAMMV--G------------------------R----SLTQ------------RFPDKENKPGEVILEVRNLTS 258 (491)
T ss_pred ----HHHHHHh--C------------------------C----Cccc------------ccccccCCCCCcEEEEeCccc
Confidence 0000000 0 0 0000 0000 0112356899999998
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEecCCC-C
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFDQHSG-E 410 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~q~~~-~ 410 (568)
.| +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++. .
T Consensus 259 ~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~ 335 (491)
T PRK10982 259 LR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRST 335 (491)
T ss_pred cc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhC
Confidence 75 3699999999999999999999999999999999999999999998753 123899999863 2
Q ss_pred CCCCCCCHHHH-----HHHh---cCC-C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 411 HLFPDDTPCEY-----LMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 411 ~l~~~~~~~e~-----l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
.+++..++.++ +... ++. . ...++++++.+++......+++.+|||||||||+|||+++.+|+||||
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illL 415 (491)
T PRK10982 336 GIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILML 415 (491)
T ss_pred CcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 35666665443 2111 121 1 234677899999963333458899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+|||+.++..+.++|.+ .+.|||+||||++++..+||++|+|.+|+++.+ ++...|.
T Consensus 416 DEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~-~~~~~~~ 479 (491)
T PRK10982 416 DEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI-VDTKTTT 479 (491)
T ss_pred cCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE-EccccCC
Confidence 999999999999999888854 478999999999999999999999999999743 3334443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=506.33 Aligned_cols=403 Identities=25% Similarity=0.282 Sum_probs=270.8
Q ss_pred eeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------EEeccccCCch-
Q psy16366 64 NFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------YCEQEVEASDD- 130 (568)
Q Consensus 64 nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------~~~qe~~~~~~- 130 (568)
+++.+|++. .+|++++ ++.+|+++||+||||||||||+|+|+|... |..+.+. +.++++.....
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 378889874 6999999 999999999999999999999999999643 3344442 11111100000
Q ss_pred -----h----HHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 131 -----S----AVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 131 -----~----~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
. ..+.+...+ .... ....+.+. ..+...++.++.+.+. .+...+.+++++..++..-+.
T Consensus 155 ~~~~~~~~~~~~q~~~~~p-~~~~-~tv~e~l~---~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIP-KVFK-GKVRELLK---KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred HhccCcceeecccchhhhh-hhhc-chHHHHHH---hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 0 000000000 0000 00000000 0011123333443331 233457777877777655443
Q ss_pred c----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHH
Q psy16366 195 T----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKE 259 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~ 259 (568)
. ++|||. ++.++++++ +.|||+||||++++..+||+|++|+++ .|.|..+...... +.
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~-----~g~~g~~~~~~~~--~~ 302 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE-----PGAYGVVSKPKGV--RV 302 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC-----ccccceecchhHH--HH
Confidence 3 889992 566666555 899999999999999999999999764 2333222211110 00
Q ss_pred HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC--CCCCCeEE
Q psy16366 260 LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP--YLPPPVLG 337 (568)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ 337 (568)
...++. .... .. .... . ......+.++.+. ..+.++++
T Consensus 303 ~i~~~~---------~~~~---------------~~---e~~~---------~----~~~~~~~~~~~~~~~~~~~~~l~ 342 (590)
T PRK13409 303 GINEYL---------KGYL---------------PE---ENMR---------I----RPEPIEFEERPPRDESERETLVE 342 (590)
T ss_pred hHHHHH---------Hhcc---------------hh---hhhh---------c----cccCcceecCCCccccCCceEEE
Confidence 000000 0000 00 0000 0 0000111111111 12457899
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
++|+++.| ++. .|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .+++|++|++. ++...|
T Consensus 343 ~~~ls~~~-~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~t 416 (590)
T PRK13409 343 YPDLTKKL-GDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--LKISYKPQYIK--PDYDGT 416 (590)
T ss_pred EcceEEEE-CCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--eeEEEeccccc--CCCCCc
Confidence 99999999 443 5999999999999999999999999999999999999999999876 57999999864 456789
Q ss_pred HHHHHHHhc-CC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 418 PCEYLMKLF-NL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 418 ~~e~l~~~~-~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
+.+++.... .. ....+.++|+.++|....+ +++.+|||||||||+||++|+.+|+||||||||+|||+.++..+.++
T Consensus 417 v~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~ 495 (590)
T PRK13409 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495 (590)
T ss_pred HHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 988875321 11 2334678899999986554 58899999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 496 IKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 496 l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|+++ ++|||+||||++++..+||++++|++ ++.
T Consensus 496 l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~ 532 (590)
T PRK13409 496 IRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPG 532 (590)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cce
Confidence 9876 67999999999999999999999965 554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=458.09 Aligned_cols=415 Identities=20% Similarity=0.256 Sum_probs=293.3
Q ss_pred CccceEEeeeEEEeC----CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc---cCCCceEEEEeccccCC
Q psy16366 56 NSVDIKVENFSLSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEAS 128 (568)
Q Consensus 56 ~~~~I~i~nls~~~~----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~---ip~~~~i~~~~qe~~~~ 128 (568)
+...++++|+|+.|. ...+++++||+|++||.++|||+||||||--+..|.|.... .-+++++.|.+.++...
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 345789999999985 46899999999999999999999999999999999885321 12345677766666544
Q ss_pred chhHHHHHHhccHHHHHHHHHHHHHhhccCC-ChHHHHHHHHHHHhccCCC-----------------------------
Q psy16366 129 DDSAVNIVLSADKNRVKLLKECSKLERDESG-DNQLRLTEVYDELKSIEAD----------------------------- 178 (568)
Q Consensus 129 ~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~-~~~~~l~~v~~el~~~~~~----------------------------- 178 (568)
+......+-..+ ..++.++. +..+..- ....++.+++.-.+.+...
T Consensus 83 se~~lr~iRG~~---I~MIFQEP-MtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL 158 (534)
T COG4172 83 SERQLRGVRGNK---IGMIFQEP-MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL 158 (534)
T ss_pred CHHHHhhhcccc---eEEEeccc-ccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence 433322221100 00000000 0000000 0012222222222222222
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++|+|..++..-... +.||| +.|.++-++++.++|+||||+..+..+||||.+|..|+++.
T Consensus 159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 34444444443221111 66788 26677777889999999999999999999999999999987
Q ss_pred EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcccee
Q psy16366 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIV 321 (568)
Q Consensus 242 ~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (568)
.+-.-+.|..... ..++.. . ..+|..
T Consensus 239 ~~~t~~lF~~PqH------------------------------------pYTr~L----l----~aeP~g---------- 264 (534)
T COG4172 239 TGTTETLFAAPQH------------------------------------PYTRKL----L----AAEPSG---------- 264 (534)
T ss_pred cCcHHHHhhCCCC------------------------------------hHHHHH----H----hcCCCC----------
Confidence 5433233321100 000000 0 001100
Q ss_pred eeecCCCCCCCCCeEEEEeeEEEeCCC----------ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 322 KFRFPNPPYLPPPVLGLHDVTFGYPGG----------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~v~~~y~~~----------~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.-+..+...+++++.++|.+.|+-. ..++++|||++++|+.+||||.+|||||||-..|.+++++. |
T Consensus 265 --~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G 341 (534)
T COG4172 265 --DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G 341 (534)
T ss_pred --CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c
Confidence 0011223457899999999999521 24789999999999999999999999999999999999876 9
Q ss_pred EEEECC--------------CeeEEEEecCCCCCCCCCCCHHHHHHHhc-----CCC----HHHHHHHHHhCCCCCcccc
Q psy16366 392 ELRKSP--------------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----NLP----YEKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 392 ~i~~~~--------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-----~~~----~~~~~~~L~~~~l~~~~~~ 448 (568)
+|++.+ +.++..+||+|...+.|.+|+.+.+.... ..+ .+.+.+.|..+||+.....
T Consensus 342 ~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~ 421 (534)
T COG4172 342 EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRN 421 (534)
T ss_pred eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 998642 45789999999999999999988664321 122 2456788999999987777
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
++|+++|||||||++||||++.+|.+++||||||+||..-+..+.++|+++ +-+.+|||||+..+..+|++++||.
T Consensus 422 RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~ 501 (534)
T COG4172 422 RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR 501 (534)
T ss_pred cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence 889999999999999999999999999999999999999988888888754 5699999999999999999999999
Q ss_pred CCeEEEE
Q psy16366 525 KKNIRKF 531 (568)
Q Consensus 525 ~g~i~~~ 531 (568)
+|+|++.
T Consensus 502 ~GkiVE~ 508 (534)
T COG4172 502 DGKIVEQ 508 (534)
T ss_pred CCEEeee
Confidence 9999873
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=381.82 Aligned_cols=200 Identities=28% Similarity=0.456 Sum_probs=178.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++||+++| |+..+|++||++|.+||+++|+||+|||||||||||+|+.+|++|+|.+++ |.++
T Consensus 1 ~mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 478999999999 788999999999999999999999999999999999999999999998764 3579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH----hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|++||+++ ||+.+|+.+++.. ..+.+.+ .+.++|+++||.+..+. +|.+|||||||||||||||+++|+
T Consensus 80 GmVFQ~fn--LFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQFN--LFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceeccccc--ccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCC
Confidence 99999975 9999999998753 2345543 45678999999988775 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++|+|||||+|||+....+.+.+.++ +.|+|+|||++.|+.+++||+++|++|.+++. |+++++
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~~~ 223 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPEEF 223 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHHHH
Confidence 99999999999999999888887765 67999999999999999999999999998764 466664
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=417.36 Aligned_cols=410 Identities=20% Similarity=0.285 Sum_probs=278.5
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-HHH
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AVN 134 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~~~ 134 (568)
....++++|++++|++..+|++|||+|.+||+++|+|.||||||||+|+|+|... |..+.+.+.++.+...+.. +..
T Consensus 5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHh
Confidence 3446889999999999999999999999999999999999999999999999753 4556666665555443321 111
Q ss_pred HHHhccHHHHHHHHHHHHHhh-----ccC---C--Ch---HHHHHHHHHHHhc-------cCCCChHHH-HHHHHHhcCC
Q psy16366 135 IVLSADKNRVKLLKECSKLER-----DES---G--DN---QLRLTEVYDELKS-------IEADAAEPR-ARRILAGLGF 193 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~-----~~~---~--~~---~~~l~~v~~el~~-------~~~~~~~~~-~~~~L~~lg~ 193 (568)
.-...-.+...+.......++ .+. + +. ..+..++++++.. ++..+..++ .-.+...+.+
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~ 162 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF 162 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence 000000011111111111111 000 0 00 1111222222211 011122222 2223333333
Q ss_pred Cc---cCCCch---------HH---HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHH
Q psy16366 194 TT---IYIPSS---------RV---HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRK 258 (568)
Q Consensus 194 ~~---L~~ePn---------~L---~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~ 258 (568)
.. ++|||. .| -+-|+..|.++|+|||+++.+..+||||.+|.+|+.+.....-..+..
T Consensus 163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~------- 235 (500)
T COG1129 163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE------- 235 (500)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-------
Confidence 32 889992 23 334456689999999999999999999999999998753210011100
Q ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecC--CCCCCCCCeE
Q psy16366 259 ELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFP--NPPYLPPPVL 336 (568)
Q Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 336 (568)
.++-+ .+.. . ++ .-.|| ......+|++
T Consensus 236 ----------~~lv~-------------~MvG------------r-------~~---------~~~~~~~~~~~~~~~~l 264 (500)
T COG1129 236 ----------DELVR-------------LMVG------------R-------EL---------EDLFPEPPEEGIGEPVL 264 (500)
T ss_pred ----------HHHHH-------------HhhC------------c-------ch---------hhhcccccccCCCCcEE
Confidence 00000 0000 0 00 00011 1112356789
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIGKF 404 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~~~ 404 (568)
++++++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|..+.+ ..|+|+
T Consensus 265 ~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v 339 (500)
T COG1129 265 EVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYV 339 (500)
T ss_pred EEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeC
Confidence 99998743 2589999999999999999999999999999999999999999987642 358999
Q ss_pred ecCCC-CCCCCCCCHHHHHHHh-----cC---CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 405 DQHSG-EHLFPDDTPCEYLMKL-----FN---LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 405 ~q~~~-~~l~~~~~~~e~l~~~-----~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+-+.. ..++..+++.+++... .+ ++ .+.++++...+++.......++.+||||.||||.|||+|+.+
T Consensus 340 ~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~ 419 (500)
T COG1129 340 PEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATD 419 (500)
T ss_pred CcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcC
Confidence 87753 4678888888875211 10 11 134566788888865555568999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||.|.|..+...+.++|+++ +.+||+||-++.++..+||||+||.+|+++.
T Consensus 420 p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 420 PKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999998888876 6799999999999999999999999999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=455.76 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=171.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++ +.+|+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 58999999999543 5799999999999999999999999999999999999999999998753 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 1314 iVpQdp~--LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1314 IIPQSPV--LFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred EECCCCe--eeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999984 7765 899988543345677788888877765432211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. +.|||+|+|+++.+.. ||+|++|++|+++++ |+++++.
T Consensus 1391 ~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~-Gt~~eLl 1457 (1495)
T PLN03232 1391 KILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY-DSPQELL 1457 (1495)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999875 5799999999999986 899999999999875 6666654
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=452.24 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.|+++||+|+|+++ +++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|..++ |.+|+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999543 4799999999999999999999999999999999999999999998754 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 1317 iVpQdp~--LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1317 IIPQAPV--LFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred EECCCCc--cccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999984 7765 899988543345667788888877664332211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. ++|||+|+|+++.+.. ||+|++|++|+++++ |+++++.
T Consensus 1394 ~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~-Gt~~eLl 1460 (1622)
T PLN03130 1394 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF-DTPENLL 1460 (1622)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999875 5799999999999976 799999999999875 5666553
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=445.80 Aligned_cols=201 Identities=23% Similarity=0.321 Sum_probs=171.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|+++ .++|+||||+|++|+++||+|++|||||||+++|.|+++|++|+|..++ |.+|+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999643 4799999999999999999999999999999999999999999998764 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+++|+|. +|.. |+.+++......+.+++.++|+..++....... ....||||||||++|||||+++|
T Consensus 1364 iVpQdp~--LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1440 (1522)
T TIGR00957 1364 IIPQDPV--LFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKT 1440 (1522)
T ss_pred EECCCCc--ccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999984 7765 899988533345677888888877764322111 22579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+||||||||++||.++...+.+.|++. +.|||+|+|+++.+.. ||+|++|++|+|+++ |+++++.+
T Consensus 1441 ~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~ 1508 (1522)
T TIGR00957 1441 KILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQ 1508 (1522)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 999999999999999999999999875 5799999999999986 699999999999875 67766543
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=371.16 Aligned_cols=202 Identities=31% Similarity=0.477 Sum_probs=172.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~~~~ 405 (568)
++++++|+++.| ++.++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.... +.+|||+|
T Consensus 3 ~~i~v~nl~v~y-~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEE-CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999 444799999999999999999999999999999999999999999998643 26899999
Q ss_pred cCCCCCCCCCCCHHHHHHHh-------cC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL-------FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~-------~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|..........|+.+.+... ++ .+.+.+.++|+++|+.++.+ +++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-CcccccCcHHHHHHHHHHHhccCCCE
Confidence 97643344456888877532 11 12367889999999998776 48999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|+|+.+...+.++|+++ ++|||+||||+..+..++|+++.|+ +++. ..|+.++..
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~-~~G~~~~~~ 226 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLI-ASGPPEEVL 226 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeE-eccChhhcc
Confidence 9999999999999999999998765 6799999999999999999998885 4554 457776654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=374.34 Aligned_cols=209 Identities=30% Similarity=0.433 Sum_probs=179.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|++++| +++++++|+||+|++|+++||+||||||||||||+|+|+++|.+|+|..+. ..+++|
T Consensus 2 ~L~~~~ls~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 68999999999 688999999999999999999999999999999999999999999998764 347999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-------~~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+||.+. .....|+.|.+... +. .. .+.+.+.|+.+|+....++ ++.+|||||||||.|||||+++|
T Consensus 81 vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 81 VPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-PVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred eccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-cccccChhHHHHHHHHHHHhcCC
Confidence 999874 45567887765421 11 12 2357788999999987765 79999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHh
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLG 547 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~ 547 (568)
++|||||||++||+..+..++++++++ +.|||+|+||++++.++||++++|++|+++....+-+.+.++.++++.
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHh
Confidence 999999999999999999999998765 479999999999999999999999999998644344455666666653
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=419.09 Aligned_cols=200 Identities=31% Similarity=0.437 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 336 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++++||+|.||. +.++|+|+||+|++|+.+|||||+||||||.+.+|-..+.|+.|.|..+. |.+||
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~ 1067 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG 1067 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc
Confidence 899999999973 34699999999999999999999999999999999999999999998743 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCC-------CCCcccc---CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~-------l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.|.|+|. ||. .|+.|++... ...+.+++.++++..+ |+.-.++ .+-.+||||||||+|||||++++
T Consensus 1068 lVsQEP~--LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1068 LVSQEPV--LFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred eeccCch--hhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 9999985 665 5899988654 2356777776666543 2222222 12458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||.||+||.+|.+.+.++|.+. +.|.|+|.|.+..++. ||.|.|+++|+|++ .|+.+++..
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 9999999999999999999999999876 6799999999999975 79999999999986 688877654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=360.25 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=187.0
Q ss_pred CeEEEEeeEEEeCCCc---eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------C
Q psy16366 334 PVLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~---~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~ 398 (568)
++|+++|+++.|++++ +++++|||+|.+||++||+|++|||||||+++|+|+.+|+.|+|.+++ .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999995433 499999999999999999999999999999999999999999998765 4
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..+.++||||...+.|..|+.+.+.... +. ..+++.++|..+||+.....+.|.+|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 5689999999999999999988775432 22 235588999999999876667889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEc-------CCHHHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFN-------GDFDDYREKL 542 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~-------g~~~~~~~~~ 542 (568)
+||||||||+||...+..++++|.+ ++-|+||||||+..+..+|||+++|++|++++.. .+...|.+.+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 9999999999999999999988864 4679999999999999999999999999998752 2345677777
Q ss_pred HHHHhh
Q psy16366 543 LTSLGE 548 (568)
Q Consensus 543 ~~~~~~ 548 (568)
++++..
T Consensus 242 l~a~~~ 247 (252)
T COG1124 242 LEAVPS 247 (252)
T ss_pred HHhhhc
Confidence 766543
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=432.64 Aligned_cols=200 Identities=21% Similarity=0.291 Sum_probs=171.6
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|+++ +++|+||||+|++|+++||||++|||||||+++|.|+++|++|+|..++ +..|+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 59999999999654 4599999999999999999999999999999999999999999998653 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC-
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN- 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~- 471 (568)
|+||+|. +|.. |+.+++......+.+++.++++..++.+..... .-.+||||||||++|||||+++
T Consensus 1388 iVpQdp~--LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1388 MIPQDPV--LFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred EECCCCc--cccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 9999984 7765 899998543345678888999988876432221 1257999999999999999995
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||.++...+.+.|.+. +.|||+|+|+++.+.. ||+|++|++|+|+++ |+++++.
T Consensus 1465 ~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~-Gt~~eLl 1532 (1560)
T PTZ00243 1465 SGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM-GSPRELV 1532 (1560)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE-CCHHHHH
Confidence 8999999999999999999999999875 5799999999999975 799999999999875 7777764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-46 Score=360.54 Aligned_cols=189 Identities=29% Similarity=0.445 Sum_probs=167.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQH 407 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~ 407 (568)
.++.+++|++.| ++..+|+||||+|.+||+++|+||+|||||||||+|+|+.+|++|+|.... ...++|+||+
T Consensus 2 ~~l~i~~v~~~f-~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEe-CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 468899999999 568899999999999999999999999999999999999999999998754 4579999999
Q ss_pred CCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 408 SGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+. ++|..|+.+++.... +.+ .+.+.++|+.+||.+..+. +|++|||||||||+|||||+.+|+|||||||
T Consensus 81 ~~--LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 DA--LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred Cc--ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 74 999999999874322 222 2457889999999988875 6799999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECC
Q psy16366 481 TNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
|++||..++..+.+.| .+.+.|||+||||++.+-..+|||++|.++
T Consensus 158 FgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 158 FGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999977666655 455789999999999999999999999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-46 Score=355.55 Aligned_cols=204 Identities=32% Similarity=0.458 Sum_probs=181.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
.+++++++|+++| |++.+++||||+|++||+++|+||+|||||||||+|.|+++|++|+|+... +
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5789999999999 889999999999999999999999999999999999999999999998643 4
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCHHHHHH----HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYEKSRR----QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~~~~~----~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
.++|++||+. .||..+|+.|+... ...++...+++ .|+.+||.+......|++|||||++|++||||++.
T Consensus 85 ~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 5799999986 49999999998753 23456655544 58899999884556789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||++||||+||||.+...+.++|.+ ++.|+|+||||++.+..+||+++++.||+|. +.|+.+++.+
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999999999999998887777765 4679999999999999999999999999996 7899888754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=425.53 Aligned_cols=201 Identities=25% Similarity=0.363 Sum_probs=170.1
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC------------------------
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP------------------------ 388 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p------------------------ 388 (568)
-|+++||+|+|++ +.++|+|+||+|++|+++|||||+|||||||+++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4899999999964 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CccEEEECC-----------CeeEEEEecCCCCCCCCCCCHHHHHHHh-c
Q psy16366 389 ------------------------------NKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCEYLMKL-F 426 (568)
Q Consensus 389 ------------------------------~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~-~ 426 (568)
++|+|..++ +..|+|++|+|. +| ..|+.|++... .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--LF-~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--LF-NMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--cc-cccHHHHHhcCCC
Confidence 589998753 457999999984 66 46899998654 2
Q ss_pred CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
..+.+++.++++..++....... ....||||||||++|||||+++|+|||||||||+||.++.+.+.+.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 35677788887777664332211 23579999999999999999999999999999999999999999999
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEEC----CeEEEEcCCHHHHH
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEK----KNIRKFNGDFDDYR 539 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~----g~i~~~~g~~~~~~ 539 (568)
.+. +.|+|+|||++..+.. ||+|++|++ |+++.-.|+.+++.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 876 5799999999999865 899999999 88665578887764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=353.06 Aligned_cols=210 Identities=30% Similarity=0.457 Sum_probs=186.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Ce
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RL 399 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 399 (568)
.+|+++||++.||+++.+|+||||+|++||+++|+||+|||||||||+|+|+..|++|+|..++ +.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4799999999999889999999999999999999999999999999999999999999998654 46
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHH-----------hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMK-----------LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~-----------~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+|||+||++. +.+.+++.++++. .+++. ...+-+.|+++|+.+.... +..+|||||+|||+|
T Consensus 82 ~iGmIfQ~~n--Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-ra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQFN--LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-RASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccCC--cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-HhccCCcchhHHHHH
Confidence 7999999985 8889999887642 23332 2335578999999887765 689999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||+++|+|+|.|||+++|||.+...+++.|++. +.|||+..|+++++.++|+|++-|.+|+++ |+|+.++..+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhhhH
Confidence 99999999999999999999999999999998754 689999999999999999999999999997 8999988887
Q ss_pred HHHHHHh
Q psy16366 541 KLLTSLG 547 (568)
Q Consensus 541 ~~~~~~~ 547 (568)
+.++++.
T Consensus 238 ~~~~~iY 244 (258)
T COG3638 238 EALDEIY 244 (258)
T ss_pred HHHHHHh
Confidence 7666663
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=352.61 Aligned_cols=196 Identities=28% Similarity=0.443 Sum_probs=174.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
|++++|||+.| +++.+++|+||+|..||+++++||+||||||+||+|.+++.|++|+|+.+. |.+|||
T Consensus 1 MI~~~nvsk~y-~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred Cceeeeeehhc-CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 57899999999 688999999999999999999999999999999999999999999998753 568999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+-|.. .|||.+|+.+++.. ..+++.+ ++.++|..+||+. ....++|++|||||+|||-+||||+.+|+||
T Consensus 80 viQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 99986 49999999998754 3456554 4667899999975 3444578999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 476 ILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
||||||++|||-++..|.+.+. ++++||||||||++.+..++|+|.+|.+|+++.+..
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 9999999999999888877764 458899999999999999999999999999988754
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=367.37 Aligned_cols=408 Identities=22% Similarity=0.297 Sum_probs=287.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-HH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-AV---- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~~---- 133 (568)
.+.+++++++|++..+.++|||+|.+||+.+|+|+||+|||||+++|.|.. -|..+.+.+.++++...++. +.
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~--~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY--QPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc--cCCcceEEECCEEeccCCHHHHHHcCC
Confidence 578999999999999999999999999999999999999999999999974 35667777777777655432 11
Q ss_pred HHHHhccHHHHHHHHHHHHHhh----ccCC-----C---hHHHHHHHHHHHh-------ccCCCChHHHHH-HHHHhcCC
Q psy16366 134 NIVLSADKNRVKLLKECSKLER----DESG-----D---NQLRLTEVYDELK-------SIEADAAEPRAR-RILAGLGF 193 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~----~~~~-----~---~~~~l~~v~~el~-------~~~~~~~~~~~~-~~L~~lg~ 193 (568)
.+|.| .+.+.+....+++ .+.. + ...++.++.+++. .++..+.+.++| .+|..|-.
T Consensus 82 GMVhQ----HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 82 GMVHQ----HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred cEEee----ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhc
Confidence 11111 1111111111111 1110 1 1233344444331 122223333333 45555433
Q ss_pred Cc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHH
Q psy16366 194 TT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKR 257 (568)
Q Consensus 194 ~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~ 257 (568)
.. +||||. .|. -++..|+|||+|||.+.++.++|||+-+|..|+.+- .++.-....
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~-~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg---t~~~~~~~t---- 229 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILR-RLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG---TVDPVAETT---- 229 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHH-HHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe---eecCCCCCC----
Confidence 32 889993 233 334568999999999999999999999999999753 222100000
Q ss_pred HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCCCCCCeEE
Q psy16366 258 KELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLG 337 (568)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (568)
.+++.++- .... + ..... ..+..+++++|+
T Consensus 230 ----------~~ela~lM-------------------------vG~~-------v-----~~~~~---~~~~~pg~~vL~ 259 (501)
T COG3845 230 ----------EEELAELM-------------------------VGRE-------V-----VLRVV---KPPSTPGEVVLE 259 (501)
T ss_pred ----------HHHHHHHh-------------------------cCCc-------c-----ccccc---cCCCCCCCeEEE
Confidence 00011100 0000 0 00000 122334578999
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------eeEEEE
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------LRIGKF 404 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i~~~ 404 (568)
+++++..-..+.+.+++|||+|+.||++||.|-.|-|-+.|+.+|+|+.+|.+|.|..+.. ..++|+
T Consensus 260 V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 260 VEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred EeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence 9999987643457899999999999999999999999999999999999999999986542 358899
Q ss_pred ecCC-CCCCCCCCCHHHHHHH-hcC---------CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 405 DQHS-GEHLFPDDTPCEYLMK-LFN---------LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 405 ~q~~-~~~l~~~~~~~e~l~~-~~~---------~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|.+. ...+-+++++.+++.. .+. +.. ..++++++.|++.......|..+||||++||+.+||=|.
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA 419 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence 9876 3557788899887642 111 122 335677899998744444578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.+|++||+.+||-|||..+.+.+.+.|.+. +.+|++||-|++++..+||+|.||.+|+++.
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999998888654 6789999999999999999999999999964
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=361.44 Aligned_cols=194 Identities=28% Similarity=0.401 Sum_probs=172.1
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
++++++|++.|+.. ..+++||||+|++||++||+|.+|||||||+|||.++..|++|+|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 57899999999531 4699999999999999999999999999999999999999999998653
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|.+||++|||++ |+...|+.+++.. ..+.+. +++.++|+.+||++..+. +|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFn--LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFN--LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-YPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecccc--ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-CchhcCcchhhHHHHHHHHh
Confidence 568999999985 8888999988753 334544 345678999999976665 78999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.+|+|||+|||||+|||++.+.+.++|++ ++.||++|||.|+.+.++|+++.+|++|++++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999998864 477999999999999999999999999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=357.62 Aligned_cols=203 Identities=35% Similarity=0.549 Sum_probs=176.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
+++.+++++|.|+++.++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|.|..+. +.++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 4788999999996556899999999999999999999999999999999999999999996533 4679
Q ss_pred EEEecCCCCCCCCCCCHHHHHH---HhcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~---~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||+||+|..+++.. |+.+.+. ...+.+.+ .+.++|..+|+....+ +++..|||||||||+||.+|+++|++
T Consensus 82 G~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCcceeeHHhhHHHHcCCCE
Confidence 99999999888866 5555443 23455543 3567899999998865 48899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+++.+.++ +.|||++|||++++..+|+++|+|++|+++ ++|++.++.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~ 227 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIF 227 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHh
Confidence 9999999999999999999999876 459999999999999999999999999996 577765543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=347.87 Aligned_cols=192 Identities=34% Similarity=0.475 Sum_probs=167.2
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+++++||++.|..+ ..+|++|||+|++||+++|+||+||||||||++|.|+.+|++|.|.+..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46799999999433 3699999999999999999999999999999999999999999987653
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..|||+||++. |.+.+|+.|++.. ..+.. ...+..++..+||.+....++|.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~~n--Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNFN--LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccCC--CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 457999999974 8999999998753 22332 2346678899999977765688999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
.+|++||+||||.+||.++.+.+++++.++ +.||||||||.+++. +|||++.|.||++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999998765 569999999999997 78999999999853
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=414.22 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=169.6
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+++|++ .+++|+||||+|++|+++||+|++|||||||+++|+|+++ ++|+|..++ +.+|+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5899999999964 4689999999999999999999999999999999999996 799998653 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC------CC----CCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI------PI----RDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~------~~----~~LSgGqkqRv~lA~al~~~p 472 (568)
|+||+|. +|.. |+.+++......+.+++.++|+..++....... ++ ..||||||||++|||||+++|
T Consensus 1296 ~IpQdp~--LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1296 VIPQKVF--IFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred EEeCCCc--cCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 9999984 7765 899998533345678888999988875432221 12 379999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||.++...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+|+++ |+++++.
T Consensus 1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll 1439 (1490)
T TIGR01271 1373 KILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLL 1439 (1490)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999875 5799999999999976 899999999999876 5555543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=329.99 Aligned_cols=195 Identities=32% Similarity=0.494 Sum_probs=172.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+++++||++.|++++++|+||||+|++||++-|+||+|||||||||+|++..+|+.|+|..+. +.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 578999999998887799999999999999999999999999999999999999999998642 568
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
||++||++ .+.++.|+.|+.... .+.+.. .+.+.|+.+||.+..+. .|.+|||||||||+||||++.+|+
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCC
Confidence 99999997 488899999987532 344443 45578999999987765 568999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
|||.||||.+|||.....+++++.++ |.||||+|||.+++..+..+++.+++|+++..+
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999988888887655 679999999999999999999999999997543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=388.03 Aligned_cols=204 Identities=38% Similarity=0.689 Sum_probs=182.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.+|+++|+++.| +++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|......+++|++|++. ++
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~ 78 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LD 78 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cC
Confidence 478999999999 789999999999999999999999999999999999999999999999998899999999974 56
Q ss_pred CCCCHHHHHHHhcC------------------------------------C-CHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 414 PDDTPCEYLMKLFN------------------------------------L-PYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 414 ~~~~~~e~l~~~~~------------------------------------~-~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
...|+.+++..... + .+.++..+|..+|++.. ..++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 66677765432110 0 01345567888999876 458999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||.||+||+||+.+|++|||||||||||.+++.+|.+.|.++.+|||+||||++|+..+|++||.++.|++..|.|+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy16366 537 DYREKL 542 (568)
Q Consensus 537 ~~~~~~ 542 (568)
.|.+..
T Consensus 237 ~~~~~r 242 (530)
T COG0488 237 SYLEQK 242 (530)
T ss_pred HHHHHH
Confidence 997654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=360.89 Aligned_cols=204 Identities=29% Similarity=0.416 Sum_probs=178.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.++++++||++.| ++..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+.. +.+||
T Consensus 5 ~~~i~i~~l~k~~-~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEE-CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 4689999999999 567899999999999999999999999999999999999999999998643 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++.+|+.+++.. .++.+. ..+.++++.++|....+ +++..|||||||||+||+||+.+|++|
T Consensus 84 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999874 7788999998753 233332 34557889999987655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||+|||+.++..+.++|+++ +.|||++||+++++..+||++++|++|+++ +.|+.+++.+.
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~~ 228 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIES 228 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHhc
Confidence 999999999999999999999876 579999999999999999999999999997 56787776543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=364.30 Aligned_cols=202 Identities=27% Similarity=0.452 Sum_probs=175.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGK 403 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~ 403 (568)
.+.++++||++.| ++..+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|..+. ++.||+
T Consensus 3 ~~~l~i~~v~k~y-g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeec-CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 4679999999999 688999999999999999999999999999999999999999999998753 567999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcC----CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFN----LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~----~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+||+. .|||.+|+.+++..... ... +.+.++|+.++|.++..+ ++.+|||||||||||||||+.+|+||
T Consensus 82 VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-KPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-ChhhhChHHHHHHHHHHHhhcCcchh
Confidence 99997 49999999998753221 222 357789999999998775 67999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HH
Q psy16366 476 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~ 539 (568)
|||||.++||..-+..+...| ++.+.|.|+||||.+.+..++|+|.+|++|+|... |++++ |.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~-gtP~eiY~ 226 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV-GTPEEIYE 226 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec-CCHHHHhh
Confidence 999999999998776655554 45688999999999999999999999999999765 55544 43
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=348.22 Aligned_cols=198 Identities=30% Similarity=0.422 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4689999999 567899999999999999999999999999999999999999999997642 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++|++ .+++..|+.+++... . +... +.+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999986 377788998887532 1 1222 34567899999987664 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 224 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEEL 224 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHH
Confidence 99999999999999999999998764 579999999999999999999999999996 45666554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=358.19 Aligned_cols=203 Identities=35% Similarity=0.523 Sum_probs=179.4
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.+++++||++.| + ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.... +.++|
T Consensus 3 ~~i~~~~l~k~~-~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKY-GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEe-CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 357889999999 6 68999999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++.+|+.|++.. .++.+ .+.+.++|+.|+|.... .+++++||+||||||+||+||+.+|+||
T Consensus 82 y~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 82 YVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred EEccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999985 8999999997743 34433 45688999999999855 4579999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---Q-GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~-~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||+|||+.++..+.++|+++ + .|||++||.++.+..+||++++|++|+++. .|+.+++...
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~-~g~~~~l~~~ 227 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA-EGTPEELKEK 227 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE-eCCHHHHHHh
Confidence 999999999999999999999876 3 599999999999999999999999999974 5677776544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=359.93 Aligned_cols=202 Identities=28% Similarity=0.410 Sum_probs=175.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|+++||++.| |+..+++++||+|..||+++|+||||||||||||+|+|+.+|++|+|.+.. .+.|+++|
T Consensus 3 ~i~l~~v~K~y-g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSF-GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEc-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 58999999999 443399999999999999999999999999999999999999999998753 35799999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +||.+|+.+++... .+.+ .+++++.++.++|++.+++ .|.+|||||||||||||||+.+|+++|||
T Consensus 82 Q~yA--LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 82 QNYA--LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred CCcc--ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 9974 99999999987542 2333 3456788999999998886 57999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+|+||...+..+...|+ +++.|+|+||||...+...+|+|.+|.+|++..+..+.+.|.+
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9999999988776666554 4678999999999999999999999999999877655555644
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=345.35 Aligned_cols=191 Identities=32% Similarity=0.512 Sum_probs=165.9
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Ce
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 399 (568)
+++++|+++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999533 4799999999999999999999999999999999999999999998653 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.++|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+. ++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-LPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCC
Confidence 5899999863 77778998876432 1222 2456778999999876654 77999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999876 57999999999999999999999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=361.03 Aligned_cols=205 Identities=29% Similarity=0.397 Sum_probs=178.6
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------Cee
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLR 400 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ 400 (568)
.+.++|+++||++.| +++.+|+||||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+ +..
T Consensus 37 ~~~~~i~i~nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 37 MSTVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred CCceeEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 345689999999999 677899999999999999999999999999999999999999999998643 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||++|++. +++..|+.+++.. .++.+. +.+.++++.++|..... +++.+|||||||||+||+||+.+|+
T Consensus 116 ig~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 116 IGVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999864 7788899998753 223332 23557899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||+|||+.++..+.++|.++ +.|||++||+++.+..+||++++|++|+++ +.|+.+++.+
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999999875 679999999999999999999999999997 5688877654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=361.06 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=172.7
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++ ..++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4789999999952 24799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+.+|||+||++. +++..|+.+++... .+.+. +.+.++|+.+||.+..+ +++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHh
Confidence 346999999974 78888999887532 23332 34567899999987665 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|++|||||||++||+.+...+.++|+++ +.|||+||||++.+.++||++++|++|+++. .|+.+++
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999988764 6799999999999999999999999999975 4666554
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=357.03 Aligned_cols=202 Identities=30% Similarity=0.418 Sum_probs=175.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
.+|+++||++.| +++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+ +..+||
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEe-CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 579999999999 567899999999999999999999999999999999999999999998643 346999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++. +++..|+.+++.. ..+.+. +.+.++++.+++....+. ++.+|||||||||+||+||+.+|++||
T Consensus 82 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~-~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-RVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-chhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999864 6778899988742 123332 235568899999876554 789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++..
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999999999999876 579999999999999999999999999986 4577776643
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=346.44 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=172.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i~ 402 (568)
++.++++++.| +...+++|||++|+.||.+|++||||||||||||+|+|++.|+.|.|..+.+ .+||
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 47889999999 6788999999999999999999999999999999999999999999986543 5799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|+||++. +|+.+|+.+++.... ..+ ..++.++|..+.|++..+. +|.+|||||||||||||||+.+|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-yP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-YPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-CchhcChHHHHHHHHHHHhhcCCC
Confidence 9999975 999999999875422 111 2356678999999987765 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+||||||+++||..-+..|...| .+++.|+|+||||.+++.++|+++++|++|+|... |+.++.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv-g~p~ev 225 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV-GPPDEV 225 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee-CCHHHH
Confidence 99999999999998876666555 45688999999999999999999999999999765 555553
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=340.84 Aligned_cols=191 Identities=31% Similarity=0.443 Sum_probs=166.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEe-CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4689999999 567899999999999999999999999999999999999999999997653 236999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+.. .+.+.+++..+++....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 67778998877432 1222 234667899999986655 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999764 5799999999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=337.55 Aligned_cols=189 Identities=28% Similarity=0.434 Sum_probs=164.1
Q ss_pred EEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEecCC
Q psy16366 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQHS 408 (568)
Q Consensus 338 ~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q~~ 408 (568)
++|+++.| ++ +++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.. ..++|++|++
T Consensus 2 ~~~l~~~~-~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 2 IENISFSY-KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred cccEEEEe-CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 67999999 45 78999999999999999999999999999999999999999999987542 3699999986
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
...++ ..|+.+++... .......+.++++.+++....+ +++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 81 ~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQLF-TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhh-hccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 42333 46888887532 1223356788999999987665 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999876 579999999999999999999999999873
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=341.20 Aligned_cols=197 Identities=26% Similarity=0.377 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +.+++|++
T Consensus 1 i~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEE-CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999998653 23699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +++..|+.+++.. ..+.. .+.+.++++.+++....+ .++.+|||||||||+||+|++.+|++||||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 6777898887643 12332 234678899999986554 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .++.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 218 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA-EGTPEE 218 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-eCChHH
Confidence 999999999999999988764 6799999999999999999999999999974 355443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=346.25 Aligned_cols=194 Identities=30% Similarity=0.361 Sum_probs=170.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEec
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQ 406 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q 406 (568)
.++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 10 ~~~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 4679999999999 567899999999999999999999999999999999999999999998653 246999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++. +++..|+.+++.... ......+.++++.++|....+ +++.+|||||||||+|||+|+.+|++|||||||+|||
T Consensus 89 ~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Ccc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 863 677789999875322 112356778899999987655 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999988654 6799999999999999999999999999864
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=360.53 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=174.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++|+++.|++++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|..+. +..|||++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 689999999995457899999999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.... +.+. ..+.++++.+||....+. ++.+|||||||||+|||||+.+|+|||||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDR-KPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 997 4889999999875322 2232 346678999999876654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++.. .|+++++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~-~g~~~~~ 222 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ-IGTPVEV 222 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ECCHHHH
Confidence 999999999999888877653 6799999999999999999999999999975 4666664
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=341.76 Aligned_cols=199 Identities=29% Similarity=0.392 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEE-CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CC----C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NL----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~----~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++. +++..|+.+++.... +. . .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++
T Consensus 81 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9874 677789988765321 11 1 134567899999986554 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 9999999999999999999998765 5699999999999999999999999999864 4666554
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=358.12 Aligned_cols=200 Identities=26% Similarity=0.419 Sum_probs=175.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKF 404 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~ 404 (568)
++|+++||++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +.+|||+
T Consensus 5 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEE-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 579999999999 677899999999999999999999999999999999999999999998753 3579999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++ .+|+.+|+.+++... .+.+ .+.+.++++.+++.+..+ +++.+|||||||||+|||||+.+|++|||
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-RYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9997 489999999987642 2232 235677899999987765 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++.. .|+.+++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~-~g~~~~~ 224 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ-IGSPQEL 224 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999888888653 6799999999999999999999999999975 4666664
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=346.51 Aligned_cols=202 Identities=26% Similarity=0.423 Sum_probs=173.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
.++|+++||++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 3589999999999 567899999999999999999999999999999999999999999997642 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
..++|++|++ .+++..|+.+++... . ..+. ..+..+|..+++....+ +++.+|||||||||+|||||+.
T Consensus 84 ~~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 84 KRMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred hcEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 3589999986 367778998876431 1 1222 24556899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999998765 569999999999999999999999999997 457776664
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=350.88 Aligned_cols=201 Identities=28% Similarity=0.468 Sum_probs=177.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+++++|++++| +++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+ +..+||+
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEE-CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 47899999999 677899999999999999999999999999999999999999999998643 2469999
Q ss_pred ecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. +++.+|+.+++.. .++.+ .+.+.+++..|||....+ +++..|||||||||+||+||+.+|++|||
T Consensus 81 ~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99874 7888899998753 23333 245677899999987665 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||+|||+.++..+.+.|+++ +.|||++||+++++.++|+++++|++|++. +.|+.+++..
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999887 579999999999999999999999999997 5788888754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=341.74 Aligned_cols=201 Identities=29% Similarity=0.406 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
++++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 46899999994227899999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+|++|++. +++..|+.+++.... +. ..+.+.++++.+++..... +++.+|||||||||+|||
T Consensus 81 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHH
Confidence 99999874 677789988764211 11 1234667899999986554 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|.+|+++. .++.+++.+
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 234 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAELTD 234 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHhhH
Confidence 999999999999999999999999999998764 5799999999999999999999999999874 577776643
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=337.08 Aligned_cols=192 Identities=31% Similarity=0.424 Sum_probs=165.9
Q ss_pred EEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q 406 (568)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4689999999421 6899999999999999999999999999999999999999999998754 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 874 67778998876432 2222 235677899999986655 4679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|+ +|+++.
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999998764 5799999999999999999999999 799864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=340.94 Aligned_cols=198 Identities=33% Similarity=0.486 Sum_probs=169.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEE-CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4689999999 567899999999999999999999999999999999999999999997643 135999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC----------C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL----------P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~----------~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
++|++. +++..|+.+++.... .. . .+.+.++++.+|+....+ +++.+|||||||||+|||
T Consensus 80 v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHH
Confidence 999874 778889988764321 11 1 224567899999986655 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++.. .++.+++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEV 230 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHh
Confidence 999999999999999999999999999999765 5799999999999999999999999999964 5666554
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=334.37 Aligned_cols=191 Identities=31% Similarity=0.479 Sum_probs=168.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------eeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR---------LRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~i~~~~q 406 (568)
|+++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEE-CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4689999999 5678999999999999999999999999999999999999999999987542 35999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++. +++..|+.+++... .+...+.+..+++.+++....+ +++.+|||||||||+|||+|+.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 863 77788999887432 2334566788899999987655 47899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999998764 5799999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=337.69 Aligned_cols=189 Identities=34% Similarity=0.495 Sum_probs=162.7
Q ss_pred EEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 336 LGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
|+++||++.|+++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999432 6899999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.+++..+|+....+ +++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHHHHHHHHcc
Confidence 236999999864 67778998876532 2222 235677899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999998765 569999999999997 9999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=357.47 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=175.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKF 404 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~ 404 (568)
++|+++||+++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+||+
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEe-CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 478999999999 567899999999999999999999999999999999999999999998753 3469999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
||++ .+|+.+|+.+++.... +.+ ...+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-YPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9997 4899999999875322 222 2456788999999887664 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||++||+.++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++... |+.+++.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~~~ 223 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV-GTPQEIY 223 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 9999999999999888888653 67999999999999999999999999999754 6665543
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=342.31 Aligned_cols=201 Identities=29% Similarity=0.418 Sum_probs=171.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+++++||++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999994257899999999999999999999999999999999999999999997643 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----------CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++|++|++. +++..|+.+++.... +. ..+.+.++++.+++....+ +++.+|||||||||+||
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHH
Confidence 899999864 677789888774211 11 1234667899999986555 47899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|+++ ..|+.+++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHhC
Confidence 9999999999999999999999999999998765 569999999999999999999999999997 457766653
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.42 Aligned_cols=200 Identities=24% Similarity=0.379 Sum_probs=172.6
Q ss_pred eEEEEeeEEEeC--C-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYP--G-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~--~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||+++|+ + .+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 478999999994 1 36799999999999999999999999999999999999999999998642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..|||++|++. +++..|+.+++... .+.+. +.+.++++.+||....+ +++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHc
Confidence 246999999874 77788998877532 23332 34567899999987655 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~ 228 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEV 228 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999765 5799999999999999999999999999974 5666554
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=333.90 Aligned_cols=191 Identities=29% Similarity=0.487 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQHS 408 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~~ 408 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4689999999 567899999999999999999999999999999999999999999998764 34699999987
Q ss_pred CCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+|||||||||+||+||+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 G--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred c--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 77778998876432 2222 234667899999986555 478999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||+.++..+.+.|+++ +.|||+||||.+++..+|+++++|.+|++..
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999999999999765 5699999999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=336.39 Aligned_cols=190 Identities=33% Similarity=0.507 Sum_probs=164.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 478999999994356899999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCC
Confidence 899999873 67778888876432 2222 235677899999986554 4679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
+|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999765 6799999999999999999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=346.79 Aligned_cols=202 Identities=28% Similarity=0.431 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++|+++||++.|+++.++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 4799999999995456799999999999999999999999999999999999999999998654 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++...++ ..|+.+++... .+... ..+..+++.+||....+ +++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998743344 46888877531 12222 34667899999986655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||+.++..+.++|.++ +.|||+||||++++.++||++++|++|+++. .|+.+++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 999999999999999999999765 5799999999999999999999999999974 4666554
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=357.71 Aligned_cols=202 Identities=25% Similarity=0.408 Sum_probs=176.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
..++|+++|+++.| +++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+|
T Consensus 11 ~~~~L~l~~l~~~~-~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35689999999999 567899999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|+||++ .+|+.+|+.+++.... +.+. +.+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-KPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999997 4899999999875322 2232 346678999999877665 67999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||..++..+.+.|+++ +.|+|+||||.+++..+||++++|++|++... |+++++
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~i 232 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTPREI 232 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 999999999999999888888653 67999999999999999999999999999854 566554
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=333.63 Aligned_cols=192 Identities=25% Similarity=0.391 Sum_probs=166.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEE-CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999998643 235999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++... .+... +.+.+++..+|+....+ .++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 67778988876432 22222 34567899999986655 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.+
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999998764 57999999999999999999999999998753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=335.71 Aligned_cols=192 Identities=24% Similarity=0.374 Sum_probs=167.4
Q ss_pred eEEEEeeEEEeCCCc----eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------Cee
Q psy16366 335 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~----~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ 400 (568)
+++++||++.|+ ++ ++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~v~~~~~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecC-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 478999999994 44 799999999999999999999999999999999999999999998653 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++ .+++..|+.+++... .+.. .+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 80 LGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999987 477778998876421 2222 234677899999986555 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|++..
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 99999999999999999999999875 5799999999999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=337.59 Aligned_cols=199 Identities=26% Similarity=0.413 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCCc----eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGGK----VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~----~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++|++++|+ ++ ++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 ~i~~~~l~~~~~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEcc-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 478999999994 44 899999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++... .+.. ...+.++++.+++..... +++.+|||||+|||+|||||+
T Consensus 80 ~~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 80 ARRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred HHhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHHHHHHHHHh
Confidence 245999999874 77778998876432 2222 234677899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 999999999999999999999999998764 5699999999999999999999999999974 4565544
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=349.71 Aligned_cols=203 Identities=27% Similarity=0.377 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++||++.|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 47899999999532 2599999999999999999999999999999999999999999987631
Q ss_pred ----------------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCcccc
Q psy16366 398 ----------------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 398 ----------------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~ 448 (568)
+..|||++|++..+++. .|+.+++... .+.+. +.+.++++.+||......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 23589999987555664 5888877421 23332 346778999999743334
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+++.+|||||||||+||++|+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 578999999999999999999999999999999999999999999988764 67999999999999999999999999
Q ss_pred CeEEEEcCCHHHHH
Q psy16366 526 KNIRKFNGDFDDYR 539 (568)
Q Consensus 526 g~i~~~~g~~~~~~ 539 (568)
|+++. .|+.++..
T Consensus 241 G~i~~-~g~~~~~~ 253 (305)
T PRK13651 241 GKIIK-DGDTYDIL 253 (305)
T ss_pred CEEEE-ECCHHHHh
Confidence 99874 56666643
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=357.55 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=173.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|+++|++++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|++
T Consensus 3 ~l~i~~l~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 58899999999 567899999999999999999999999999999999999999999998643 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++... .+.+. +.+.++++.++|....+ +++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9874 88889999987532 22222 34677899999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~-~g~~~~i 221 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 4666664
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=359.95 Aligned_cols=201 Identities=28% Similarity=0.427 Sum_probs=174.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++|+++|++++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.. +.++|
T Consensus 2 ~~L~~~nls~~y-~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 479999999999 578899999999999999999999999999999999999999999998643 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-------cC-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-------FN-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-------~~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++..+|+.+++... +. .. .+.+.++++.+++....+ +++.+|||||||||+|||||+++
T Consensus 81 ~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999873 66778998876431 11 11 245678899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||+|||+.++..+.++|+++ +.|||++|||++++.++|+++++|++|+++. .|+++++.
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~ 227 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVL 227 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 9999999999999999999999988765 5699999999999999999999999999974 67887754
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=337.02 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=166.6
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
+|+++++||++.|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4689999999999532 4799999999999999999999999999999999999999999998653
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+. ++.+|||||||||+||||
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-RPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHH
Confidence 135999999863 67778999887431 2222 2346678999999876554 679999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+|+||||||||+|||+.+...+.+.|.++ +.|||+||||++++..+ +++++|++|+++.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~ 225 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEE
Confidence 99999999999999999999999999998764 56999999999999876 5999999999864
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=340.09 Aligned_cols=200 Identities=30% Similarity=0.457 Sum_probs=171.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++|+++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.+..++|++|++. ++
T Consensus 3 ~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~--~~ 79 (251)
T PRK09544 3 SLVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLY--LD 79 (251)
T ss_pred cEEEEeceEEEE-CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccc--cc
Confidence 589999999999 567899999999999999999999999999999999999999999999887778999999874 33
Q ss_pred CC--CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHH
Q psy16366 414 PD--DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491 (568)
Q Consensus 414 ~~--~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~ 491 (568)
+. .++.+++....+...+.+..+++.+++....+ .++..|||||+|||+||+||+.+|++|||||||+|||+.++..
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 33 35555543222334566788899999987655 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 492 LAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 492 l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+.|.++ +.|||+||||++++..+|+++|+|++ +++ ..|+.+++.
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 99988654 67999999999999999999999965 665 457776654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=335.73 Aligned_cols=188 Identities=32% Similarity=0.468 Sum_probs=161.0
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecCCCCC
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQHSGEH 411 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~~~~~ 411 (568)
++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++...
T Consensus 2 ~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred cccceeEE-CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 67999999 567899999999999999999999999999999999999999999998865 35699999987532
Q ss_pred CCCCCCHHHHHHHhcC--------C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 LFPDDTPCEYLMKLFN--------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~--------~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
.+...|+.+++..... . ..+.+.++++.+++....+ +++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2234688888753211 0 1234677899999986554 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 9999999999999999875 4699999999999999999999998763
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=340.91 Aligned_cols=203 Identities=26% Similarity=0.402 Sum_probs=174.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
...|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 3568999999999 567899999999999999999999999999999999999999999987543
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
+..++|++|++. +++..++.+++.. ..+.. ...+.++++.+|+.......++.+|||||||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 235899999874 6777899888742 11222 2346778999999865434578999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 238 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQ 238 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 5799999999999999999999999999974 577766
Q ss_pred HH
Q psy16366 538 YR 539 (568)
Q Consensus 538 ~~ 539 (568)
+.
T Consensus 239 ~~ 240 (257)
T PRK10619 239 LF 240 (257)
T ss_pred hh
Confidence 53
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=341.94 Aligned_cols=203 Identities=23% Similarity=0.355 Sum_probs=173.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~------------ 397 (568)
+|+|+++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 2 ~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 2 QTIIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred CcEEEEeeEEEEe-CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3589999999999 5678999999999999999999999999999999999999986 48887543
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHhc-----------CC-C---HHHHHHHHHhCCCCCccccCCCCCCCHhH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-----------NL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 458 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-----------~~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGq 458 (568)
+..++|++|++. +++..|+.+++.... +. . ...+.++++.+|+....+ +++.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~ 157 (262)
T PRK09984 81 IRKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRVSTLSGGQ 157 (262)
T ss_pred HHHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCccccCHHH
Confidence 125899999863 677889988875311 00 1 234677899999986555 4789999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|++. ..|+
T Consensus 158 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~ 236 (262)
T PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGS 236 (262)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCC
Confidence 99999999999999999999999999999999999999765 569999999999999999999999999985 5688
Q ss_pred HHHHHH
Q psy16366 535 FDDYRE 540 (568)
Q Consensus 535 ~~~~~~ 540 (568)
++++.+
T Consensus 237 ~~~~~~ 242 (262)
T PRK09984 237 SQQFDN 242 (262)
T ss_pred HHHhcc
Confidence 888744
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=332.24 Aligned_cols=190 Identities=32% Similarity=0.451 Sum_probs=166.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++|+++.| +++++|+|+||+|.+| +++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 i~~~~~~~~~-~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRY-GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEE-CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 4689999999 5678999999999999 9999999999999999999999999999998754 34689999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+|||||||||+|||||+.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 67778998876431 2222 234667899999986655 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999876 5799999999999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=337.14 Aligned_cols=201 Identities=26% Similarity=0.422 Sum_probs=173.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 1 ~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 478999999999 567899999999999999999999999999999999999999999998643 1259
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----------C----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----------L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----------~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+|++|++ .+++..|+.+++..... . ....+..+++.+|+....+ .++.+|||||+|||+|||
T Consensus 80 ~~~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHH
Confidence 9999986 47788899887653211 1 1234667899999986655 478999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++ ..++.+++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 999999999999999999999999999999876 469999999999999999999999999997 457777664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=333.24 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=166.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 400 (568)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 478999999995456899999999999999999999999999999999999999999997643 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+... ..+.++++.+++....+ +++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 66678988877532 22332 23567899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.+++.+.++|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999988765 5799999999999999999999999999853
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=346.47 Aligned_cols=203 Identities=29% Similarity=0.398 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
+|+++||++.|+++ +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 47899999999532 2599999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..+||++|++..+++. .|+.+++... .+.+. ..+.++++.++|......+++..|||||||||+|||+|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 23589999997545665 5888876432 23332 23567899999964333457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|.+|+++ ..|+.+++.
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999999999999999988754 579999999999999999999999999997 467777754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=340.31 Aligned_cols=192 Identities=28% Similarity=0.394 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQHS 408 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~~ 408 (568)
+|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. ...++|++|++
T Consensus 1 ml~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEe-CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 47899999999 567899999999999999999999999999999999999999999998753 23589999986
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
. +++..|+.+++... .+... +.+.++++.+||....+ +++.+|||||||||+|||+|+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 G--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred c--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 67778998876432 22222 34678899999986555 478999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|+ +|+++.
T Consensus 157 ~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999999775 5799999999999999999999998 488864
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=338.12 Aligned_cols=200 Identities=26% Similarity=0.430 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 68999999999 567899999999999999999999999999999999999999999987532
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+... +.+.++++.+|+....+ .++.+|||||||||+||||
T Consensus 82 ~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-SYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-CChhhCChHHHHHHHHHHH
Confidence 235899999863 67778888876421 12222 34567899999986554 4789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 232 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKALF 232 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999988764 5799999999999999999999999999974 56666653
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=331.20 Aligned_cols=203 Identities=30% Similarity=0.463 Sum_probs=179.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.+++++++++++| |+-.+++||||+|.+|++++|+||||||||||+|+|+|.++|++|+|.... +..
T Consensus 2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3689999999999 788999999999999999999999999999999999999999999998753 345
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc----------CC-----C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF----------NL-----P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~----------~~-----~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
|+.-||.+ .+|+.+|+.|++.... .. . .+++..+|+.+||.+..+. +.++||+|||+|
T Consensus 81 i~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~-~A~~LsyG~qR~ 157 (250)
T COG0411 81 IARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADR-PAGNLSYGQQRR 157 (250)
T ss_pred ceeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcc-hhhcCChhHhHH
Confidence 78889987 5999999999875321 00 1 2456778999999988775 889999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+.|||||+.+|++||||||.+||.+.....+.+.|.+. +.||++|.||+.++..+||||+||+.|+++ .+|++++
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~e 236 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEE 236 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHH
Confidence 99999999999999999999999999999999888765 469999999999999999999999999987 6899988
Q ss_pred HHH
Q psy16366 538 YRE 540 (568)
Q Consensus 538 ~~~ 540 (568)
..+
T Consensus 237 V~~ 239 (250)
T COG0411 237 VRN 239 (250)
T ss_pred Hhc
Confidence 654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=374.56 Aligned_cols=204 Identities=28% Similarity=0.482 Sum_probs=179.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
+++|+++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....+||++|++. +
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--L 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--C
Confidence 56899999999994267899999999999999999999999999999999999999999999877778999999874 6
Q ss_pred CCCCCHHHHHHHhc-----------------CCC--------------------------HHHHHHHHHhCCCCCccccC
Q psy16366 413 FPDDTPCEYLMKLF-----------------NLP--------------------------YEKSRRQLGMFGLPSYAHTI 449 (568)
Q Consensus 413 ~~~~~~~e~l~~~~-----------------~~~--------------------------~~~~~~~L~~~~l~~~~~~~ 449 (568)
++..|+.+++.... ... ...+..++..+|+.. . .+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-DA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-cC
Confidence 77788888764210 100 124556788999963 3 45
Q ss_pred CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 450 ~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
++.+|||||||||+|||+|+.+|++|||||||||||+.++..+.+.|+++++|||+||||++++..+|+++|+|++|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 78999999999999999999999999999999999999999999999999899999999999999999999999999998
Q ss_pred EEcCCHHHHHH
Q psy16366 530 KFNGDFDDYRE 540 (568)
Q Consensus 530 ~~~g~~~~~~~ 540 (568)
.+.|++++|.+
T Consensus 240 ~~~g~~~~~~~ 250 (556)
T PRK11819 240 PWEGNYSSWLE 250 (556)
T ss_pred EecCCHHHHHH
Confidence 78999998854
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=335.68 Aligned_cols=198 Identities=26% Similarity=0.417 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
++++||++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEe-CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4689999999 567899999999999999999999999999999999999999999997642 135899
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++ .+++..|+.+++... .+.. ...+..++..+++....+ .++.+|||||||||+|||||+.+|++||
T Consensus 80 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986 377778998876532 2222 134567899999986555 4789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+|||+.+++.+.++|+++ +.|||+||||++.+..+|+++++|++|++. ..++.+++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EEeCHHHh
Confidence 99999999999999999988764 569999999999999999999999999997 45666654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=351.03 Aligned_cols=205 Identities=21% Similarity=0.307 Sum_probs=173.5
Q ss_pred CCCeEEEEeeEEEeCC------------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--
Q psy16366 332 PPPVLGLHDVTFGYPG------------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~------------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-- 397 (568)
..++|+++||++.|+. ...+++||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+..
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3578999999999942 24699999999999999999999999999999999999999999997642
Q ss_pred ------------CeeEEEEecCCCCCCCCCCCHHHHHHH---hc--CCCH----HHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 398 ------------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LF--NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 398 ------------~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~--~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
+.+|+|++|++...+++.+|+.+++.. .+ +.+. +.+.++|+.++|......+++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 246999999985557888899887643 12 2332 34567899999964333457899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+|+++++|.+|++++ .
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive-~ 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE-L 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999998888654 6799999999999999999999999999976 3
Q ss_pred CCHHH
Q psy16366 533 GDFDD 537 (568)
Q Consensus 533 g~~~~ 537 (568)
|+.++
T Consensus 244 g~~~~ 248 (331)
T PRK15079 244 GTYDE 248 (331)
T ss_pred cCHHH
Confidence 55444
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=352.94 Aligned_cols=199 Identities=28% Similarity=0.388 Sum_probs=173.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|++
T Consensus 2 ~L~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEe-CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc-------CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF-------NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~-------~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++ .+|+.+|+.+++.... ..+ .+.+.++|+.++|....+. ++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-YPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 996 4888999999875321 122 2356678999999876654 7899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|+++. .|+.+++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~-~g~~~~i 224 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ-AGTPDQV 224 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999888888654 5799999999999999999999999999975 4666664
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=333.49 Aligned_cols=198 Identities=28% Similarity=0.435 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeec-CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4689999999 567899999999999999999999999999999999999999999997643 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC--CHHHHHHHHHhC-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL--PYEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~--~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++ .+++..|+.+++.... .. ....+..+++.+ ++....+ .++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred ecccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99987 3777889988775321 11 122345677777 4665444 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++.. .++.+++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 9999999999999999999765 5699999999999999999999999999874 4665544
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=344.49 Aligned_cols=202 Identities=31% Similarity=0.436 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.|+++||++.|++. +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 37899999999532 4699999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCC--CccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~--~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+.+|||++|++...++ ..|+.+++... .+.+. +.+.++++.+||. ... .+++..|||||||||+|||||
T Consensus 82 ~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~qrv~iAraL 159 (287)
T PRK13637 82 RKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKRRVAIAGVV 159 (287)
T ss_pred hhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHHHHHHHHHH
Confidence 2469999999754454 46888877531 23333 3456789999997 334 457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 160 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13637 160 AMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVF 233 (287)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998754 5799999999999999999999999999974 57777653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=353.69 Aligned_cols=200 Identities=23% Similarity=0.358 Sum_probs=174.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc--cEEEECC---------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK--GELRKSP---------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~--G~i~~~~---------~~~i~~ 403 (568)
.|+++||++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.++. +..|||
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEE-CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 47899999999 56789999999999999999999999999999999999999999 9998653 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++|++. +|+.+|+.+++... .+.+. ..+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-LPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999974 88999999987532 22332 346778999999877664 789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY-----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||++||+.++..+.+.|.++ +.|+|+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~ 227 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALY 227 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999988887643 5799999999999999999999999999975 46666653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=348.32 Aligned_cols=205 Identities=26% Similarity=0.358 Sum_probs=172.7
Q ss_pred CCCeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------
Q psy16366 332 PPPVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------- 397 (568)
++++|+++|++|.|++. .++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 45789999999999532 3699999999999999999999999999999999999999999997642
Q ss_pred -----------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCC-CccccCCCC
Q psy16366 398 -----------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLP-SYAHTIPIR 452 (568)
Q Consensus 398 -----------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~-~~~~~~~~~ 452 (568)
+..++|++|++..+++. .|+.+++... .+.+. ..+.++++.+||. ...+ +++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~ 175 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE-RSPF 175 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc-CCcc
Confidence 23589999998555665 4888876431 12232 2456789999997 4444 4789
Q ss_pred CCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 453 DLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 453 ~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998754 579999999999999999999999999997
Q ss_pred EEcCCHHHHH
Q psy16366 530 KFNGDFDDYR 539 (568)
Q Consensus 530 ~~~g~~~~~~ 539 (568)
. .|+.+++.
T Consensus 256 ~-~g~~~~~~ 264 (320)
T PRK13631 256 K-TGTPYEIF 264 (320)
T ss_pred E-eCCHHHHh
Confidence 4 57776653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=335.68 Aligned_cols=199 Identities=27% Similarity=0.393 Sum_probs=168.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
.|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSS-FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 47899999999 567899999999999999999999999999999999999999999997653 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++|++. +++ .++.+++... .+.....+..+++.+++......+++.+|||||||||+|||||+.+|++||||||
T Consensus 82 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999874 554 5888876421 1222345678899999973333457899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++.. ++.+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 219 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEY-AKTYDF 219 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEe-CCHHHH
Confidence 9999999999999988764 67999999999999999999999999999754 555443
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=334.29 Aligned_cols=200 Identities=30% Similarity=0.444 Sum_probs=170.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~ 404 (568)
+|+++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|+
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAY-GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 47899999999 5678999999999999999999999999999999999999999999976431 368999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. ++...|+.+++... .+.. ...+.+++..+|+....+. ++.+|||||+|||+|||||+.+|+||||
T Consensus 80 ~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD-KVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99864 66678888876432 1222 2345678999999876554 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||++||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|+++. .++.+++..
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~~ 221 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELRG 221 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHHH
Confidence 9999999999999999998764 5699999999999975 99999999999874 567666543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=338.30 Aligned_cols=204 Identities=24% Similarity=0.337 Sum_probs=169.9
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
.++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+...
T Consensus 4 ~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLY-GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEc-CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3589999999999 5678999999999999999999999999999999999999999999976432
Q ss_pred ------eeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 399 ------LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 399 ------~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
..++|++|++...++...++.+++... +.. . ...+.++++.+++.......++.+|||||+|||+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 248999999754566666666554321 111 1 23456789999997422234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 239 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQV 239 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999988653 6799999999999999999999999999974 4666554
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=335.85 Aligned_cols=200 Identities=27% Similarity=0.401 Sum_probs=171.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 ~l~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEE-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 47899999999 567899999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++|++. +++..|+.+++... .+... +.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+
T Consensus 80 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999863 67778888876421 12222 34567899999986655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVLI 224 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHHh
Confidence 99999999999999999999998765 5799999999999999999999999999974 57776654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=341.26 Aligned_cols=204 Identities=26% Similarity=0.333 Sum_probs=174.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 8 ~~~~l~i~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRV-PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEE-CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 45789999999999 567899999999999999999999999999999999999999999998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc----C----CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF----N----LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~----~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++..++.+++.... . .. ...+..++..+++....+ +++.+|||||||||+|||||+
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 87 VAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHHHHHHHHHHHHHh
Confidence 999999863 566778888775311 0 11 234667899999976554 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..++.+++.+
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~~ 237 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELMR 237 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhcC
Confidence 999999999999999999999998888754 579999999999999999999999999996 4567776643
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=332.95 Aligned_cols=196 Identities=27% Similarity=0.378 Sum_probs=163.7
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999432 2799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCC--CHH---H-HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYE---K-SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~--~~~---~-~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++...+++..|+.+++.. ..+. ... . +.+++..+++.......++.+|||||||||+|||+|
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 236999999974346667888887642 1211 111 1 236788999963223347899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999765 5799999999999999999999999999863
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=332.66 Aligned_cols=194 Identities=27% Similarity=0.328 Sum_probs=165.5
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
+++|+++|+++.|+++ .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 3589999999999532 3599999999999999999999999999999999999999999997642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ +++..|||||||||+||||
T Consensus 84 ~~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 84 KLRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHH
Confidence 136999999863 67778888876431 1222 245677899999986655 4689999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||.+++.. |+++++|++|+++.
T Consensus 161 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 161 FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 99999999999999999999999999998654 5799999999999865 99999999999863
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=341.16 Aligned_cols=205 Identities=22% Similarity=0.291 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++||+++|++ .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999941 24799999999999999999999999999999999999999999997642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh--c--CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..++|++|++...+++..++.+++... . ... .+.+.++++.+++.......++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 2359999998754456667777765321 1 122 2346778999999533334477999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++. ..++.+++.
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999999999988764 579999999999999999999999999996 467776654
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=331.53 Aligned_cols=198 Identities=30% Similarity=0.409 Sum_probs=168.8
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
|+++||++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999432 6899999999999999999999999999999999999999999997643 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++. +++..|+.+++... .+.+. +.+.++++.++|....+. ++.+|||||+|||+|||||+.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK-RARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC-hhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 67778988876432 22222 345678999999865554 7899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||||++||+.+...+.+.|.++ +.|||++|||++++..+|+++++|++|+++. .++.++
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~ 218 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSPQE 218 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCHHH
Confidence 9999999999999999999876 3699999999999999999999999999974 455543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=335.99 Aligned_cols=200 Identities=23% Similarity=0.389 Sum_probs=171.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~ 402 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEe-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 68999999999 567899999999999999999999999999999999999999999998653 24599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc----CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF----NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++. +++..|+.+++.... ... ...+.++++.+++....+ .++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999863 677789988765321 112 234667899999986554 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.+ .+.|||++|||++++..+|+++++|++|+++. .++++++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 225 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEIL 225 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHh
Confidence 999999999999999988887765 36799999999999999999999999999974 57777764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=331.13 Aligned_cols=191 Identities=28% Similarity=0.416 Sum_probs=163.4
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|++. +++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999432 4799999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++ .+++..|+.+++... .... .+.+.++++.+|+....+ +++.+|||||||||+|||+|+
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 14599999986 367778998876431 1222 234667899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++.. +|++++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999998754 5799999999999965 7999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=331.12 Aligned_cols=196 Identities=29% Similarity=0.439 Sum_probs=170.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQHS 408 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~~ 408 (568)
|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. ...++|++|++
T Consensus 1 l~l~~v~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRF-GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4689999999 567899999999999999999999999999999999999999999998654 23689999986
Q ss_pred CCCCCCCCCHHHHHHH---hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMK---LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
. +++..|+.+++.. ..+.....+.++++.+|+....+ .++.+|||||+||++||||++.+|++|||||||+|||
T Consensus 80 ~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 P--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred C--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 3 6777888887642 22445667888999999987665 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
+.+++.+.++|.++ +.|||+||||.+++..+|+++++|.+|++.. .|+..
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~ 209 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecChh
Confidence 99999999999765 4689999999999999999999999999975 45544
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=331.56 Aligned_cols=190 Identities=33% Similarity=0.508 Sum_probs=164.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 401 (568)
++++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 46899999995446899999999999999999999999999999999999999999997643 1358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++. +++..|+.+++... .+.. .+.+.++++.+++....+ .++.+||||||||++|||||+.+|++
T Consensus 81 ~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 99999874 77778998876532 1222 234667899999986655 46799999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999765 57999999999999999999999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=344.59 Aligned_cols=202 Identities=28% Similarity=0.384 Sum_probs=170.5
Q ss_pred EEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------
Q psy16366 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------- 398 (568)
Q Consensus 336 l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 398 (568)
++++||+++|++. .++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999532 46999999999999999999999999999999999999999999976431
Q ss_pred --eeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 399 --LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 399 --~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
..|||++|++..+++. .|+.+++... .+.+. ..+.++++.+||......+++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 3599999997545664 5888876421 23332 245678999999743334578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999988764 579999999999999999999999999997 457766653
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=337.60 Aligned_cols=202 Identities=28% Similarity=0.457 Sum_probs=172.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 3 QPLLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred CceEEEeeEEEEE-CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 3589999999999 567899999999999999999999999999999999999999999998643 124
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-------------C---C--C----HHHHHHHHHhCCCCCccccCCCCCCCHhH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-------------N---L--P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQ 458 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-------------~---~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGq 458 (568)
++|++|++. +++..|+.+++.... + . . ...+.++++.+|+....+ .++.+|||||
T Consensus 82 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~ 158 (255)
T PRK11300 82 VVRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-RQAGNLAYGQ 158 (255)
T ss_pred eEEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-CChhhCCHHH
Confidence 888999864 778889988765310 0 0 0 124566788999976555 4789999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+||+||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ ..++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~ 237 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGT 237 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCC
Confidence 99999999999999999999999999999999999988754 579999999999999999999999999997 4567
Q ss_pred HHHHH
Q psy16366 535 FDDYR 539 (568)
Q Consensus 535 ~~~~~ 539 (568)
.+++.
T Consensus 238 ~~~~~ 242 (255)
T PRK11300 238 PEEIR 242 (255)
T ss_pred HHHHh
Confidence 66654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=348.62 Aligned_cols=214 Identities=27% Similarity=0.337 Sum_probs=178.0
Q ss_pred CCeEEEEeeEEEeCC---------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------
Q psy16366 333 PPVLGLHDVTFGYPG---------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------ 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~---------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------ 397 (568)
+++|+++||++.|+. ...+|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+..
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999952 24799999999999999999999999999999999999999999997643
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
+.+|+|++|++...+++.+++.+.+... . +.. .+.+.++|+.+||......+++.+|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2469999999866688888887765421 1 222 23567889999997433345789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH-
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD- 536 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~- 536 (568)
|+|||||+.+|+|||+||||++||..++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.+
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999988654 67999999999999999999999999999864 4433
Q ss_pred -------HHHHHHHHHHh
Q psy16366 537 -------DYREKLLTSLG 547 (568)
Q Consensus 537 -------~~~~~~~~~~~ 547 (568)
.|.+.++..+.
T Consensus 242 ~~~~p~hpyt~~ll~~~p 259 (327)
T PRK11308 242 IFNNPRHPYTQALLSATP 259 (327)
T ss_pred HhcCCCCHHHHHHHHhCC
Confidence 34555555543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=333.37 Aligned_cols=192 Identities=28% Similarity=0.388 Sum_probs=165.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----CCCccEEEECC-------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGELRKSP------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~------------- 397 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++.
T Consensus 1 i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEc-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4689999999 5678999999999999999999999999999999999999 99999997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCccccCC-CCCCCHhHHHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSYAHTIP-IRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~~~~~~-~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++. ++ ..|+.+++... .+. . .+.+.++++.+|+.......+ +.+|||||||||+|||||
T Consensus 80 ~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 80 RRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred HhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHH
Confidence 235899999874 56 67988876431 121 1 234667899999987655433 589999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
+.+|++|||||||++||+.++..+.+.|.++. .|||+||||++++..+|+++++|++|+++..
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998763 5899999999999999999999999999753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=353.37 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=175.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
..++|+++|+++.| ++..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|..+. +..||
T Consensus 16 ~~~~l~l~~v~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 16 LTPLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CCceEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35689999999999 567899999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|+||++. +|+.+|+.+++.... +.+. +.+.++++.++|.+..+. ++.+|||||||||+|||||+.+|++|
T Consensus 95 ~vfQ~~~--lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 95 MMFQSYA--LFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKR-KPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999974 899999999875321 2232 346678999999877664 78999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHH----HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAI----KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l----~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||..++..+.+.| ++.+.|+|+||||.+++..+||++++|++|++.. .|+.+++.
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~-~g~~~~~~ 238 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ-IGEPEEIY 238 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE-EcCHHHHH
Confidence 999999999999988777555 4457899999999999999999999999999975 46666543
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=392.34 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=164.7
Q ss_pred eEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC-------CeeE
Q psy16366 335 VLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP-------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~-------~~~i 401 (568)
+++++||++.|+ +.+.+|+|||++|++|++++|+|||||||||||++|+|..+ |++|+|..++ +..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 478999999994 24679999999999999999999999999999999999997 7889998754 3468
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc------CCCH----HHHHHHHHhCCCCCccccCCCC----CCCHhHHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF------NLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAEL 467 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~------~~~~----~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqRv~lA~a 467 (568)
||++|++. +++..|+.|++.... ..+. +.+.++++.++|.+..+. .++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~-~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADA-VVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCC-eeCCCCCCCCHHHhhHHHHHHH
Confidence 99999863 567889999875321 1222 345788999999876654 455 799999999999999
Q ss_pred HccCCC-eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHH-HHhhCceEEEEECC-eEEEEcCCH
Q psy16366 468 TLNNPD-ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERL-IRETDCELWALEKK-NIRKFNGDF 535 (568)
Q Consensus 468 l~~~p~-lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~~~i~~l~~g-~i~~~~g~~ 535 (568)
|+.+|+ ||||||||+|||..+...+.+.|+++ +.|||++|||++. +...+|++++|.+| +++. .|+.
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~-~G~~ 988 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY-FGDL 988 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE-ECCc
Confidence 999997 99999999999999999999999765 5799999999986 45679999999997 8764 4543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=372.45 Aligned_cols=203 Identities=32% Similarity=0.547 Sum_probs=177.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+....+|+|++|++. ++.
T Consensus 1 ml~i~~ls~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~ 77 (530)
T PRK15064 1 MLSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFE 77 (530)
T ss_pred CEEEEEEEEEe-CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCC
Confidence 47899999999 567899999999999999999999999999999999999999999999887778999999863 667
Q ss_pred CCCHHHHHHHhc--------------C------------------------C-CHHHHHHHHHhCCCCCccccCCCCCCC
Q psy16366 415 DDTPCEYLMKLF--------------N------------------------L-PYEKSRRQLGMFGLPSYAHTIPIRDLS 455 (568)
Q Consensus 415 ~~~~~e~l~~~~--------------~------------------------~-~~~~~~~~L~~~~l~~~~~~~~~~~LS 455 (568)
..|+.+++.... . . ....+.++|..+|+.......++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 778877653210 0 0 013456789999997644445789999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|||||||+||++|+.+|+||||||||+|||+.++..|.+.|.+.+.|||+||||++++..+|+++++|++|+++.+.|++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999997788999
Q ss_pred HHHHH
Q psy16366 536 DDYRE 540 (568)
Q Consensus 536 ~~~~~ 540 (568)
++|.+
T Consensus 238 ~~~~~ 242 (530)
T PRK15064 238 DEYMT 242 (530)
T ss_pred HHHHH
Confidence 98853
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=375.39 Aligned_cols=201 Identities=21% Similarity=0.305 Sum_probs=169.0
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..-++++|++.+|.. ..++|+||||+|++||++||||..|||||||+++|..+..|.+|+|.+++ |.+
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 346999999999943 36799999999999999999999999999999999999999999998753 678
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
++.+||+|. +|.. |++.++--....+.+++.++|+..+|....... --.++|-||||.++|||||++
T Consensus 1216 lsIIPQdPv--LFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1216 LSIIPQDPV--LFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred CeeeCCCCc--eecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 999999985 7765 666665433344667788887776654332221 136899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+++||+|||.|++.|+++-..+.+.|++. .+|||.|.|.++.+.. ||+|+||++|++++|+.+.+-
T Consensus 1293 ~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1293 KSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred cCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHH
Confidence 99999999999999999999999999764 5799999999999987 699999999999998765433
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=347.74 Aligned_cols=193 Identities=28% Similarity=0.416 Sum_probs=167.0
Q ss_pred EEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEecCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFDQHSGEHL 412 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~q~~~~~l 412 (568)
++| +++++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.. +..+||++|++. +
T Consensus 1 k~y-~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~ 77 (302)
T TIGR01188 1 KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--V 77 (302)
T ss_pred Cee-CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--C
Confidence 357 567899999999999999999999999999999999999999999998753 235999999864 7
Q ss_pred CCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 413 FPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 413 ~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++.+|+.+++... .+... +.+.++++.++|....+ +++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 8888999887532 23332 34677899999987655 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.+
T Consensus 157 ~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 157 PRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 99999999999775 5799999999999999999999999999974 677777654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=376.67 Aligned_cols=202 Identities=27% Similarity=0.511 Sum_probs=174.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|.++||+++| +++++|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.+....+++|++|++.. +
T Consensus 1 ~i~i~nls~~~-g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~--~- 76 (638)
T PRK10636 1 MIVFSSLQIRR-GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA--L- 76 (638)
T ss_pred CEEEEEEEEEe-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC--C-
Confidence 47899999999 6788999999999999999999999999999999999999999999998877789999996421 1
Q ss_pred CCCHHHHHHH--------------------------h---c---C-C-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 415 DDTPCEYLMK--------------------------L---F---N-L-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 415 ~~~~~e~l~~--------------------------~---~---~-~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
..+..+++.. . . + . ....+..+|..+||......+++.+|||||||
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 1333332210 0 0 0 0 12356778999999743334589999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+||++|+.+|+||||||||||||+.++.+|.+.|.++++|||+||||++++..+|+++|+|++|++..+.|+|+.|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=321.64 Aligned_cols=198 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-----cEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-----G~i~~~~---------- 397 (568)
.+.++++||++.| |++.+|++||+.|+++.++||+||+|||||||||++..+..... |+|.+.+
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4678999999999 78999999999999999999999999999999999999887765 7776532
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
|.+||++||.|+ .|+ +++.+++.. ..+... +.+++.|....|.+. ....+...||||||||++|
T Consensus 84 ~~lRr~vGMVFQkPn--PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPN--PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCC--CCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 568999999986 566 899998753 334332 235556776666542 2223567899999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||||+.+|+|||||||||+|||.+...+.++|.+++ -|||+|||++.-+.+++|+.+++.+|+++++..+
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 999999999999999999999999999999998874 5999999999999999999999999999998543
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=341.34 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=173.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
+++|+++||++.|++++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.. +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 46899999999995356799999999999999999999999999999999999999999997653 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.+||++|++...++ ..|+.+++... .+.+. ..+..+++.+||....+ +++.+|||||+||++|||||+.+|
T Consensus 83 ~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 83 SVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred hEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 58999998743344 46888877531 23332 34567889999987655 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..|+.+++.
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 230 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 230 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999998888754 579999999999999999999999999996 467777654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=335.74 Aligned_cols=200 Identities=28% Similarity=0.424 Sum_probs=172.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 397 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFY-GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEE-CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 47899999999 567899999999999999999999999999999999999999999997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++.. ..+.. ...+.+++..+|+....+ +++..|||||||||+|||||+
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 235899999874 7778899888742 12222 234567899999986655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|.+|+++ ..++.+++.
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 999999999999999999999999998764 579999999999999999999999999997 457776653
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=330.17 Aligned_cols=187 Identities=35% Similarity=0.504 Sum_probs=159.9
Q ss_pred EEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 338 LHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 338 ~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++|+++.| ++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 2 ~~~l~~~~-~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 2 LKNLSFSY-PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred ceeEEEec-CCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 68999999 45 6899999999999999999999999999999999999999999998653 2468999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++.. .+...|+.+++... .+.. ...+.++++.+++....+ +++..|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDD-QFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhh-hcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998632 23457888876432 1222 234667899999986554 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999765 4699999999999999999999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=342.66 Aligned_cols=202 Identities=30% Similarity=0.410 Sum_probs=170.1
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------ 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 398 (568)
+|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999422 46999999999999999999999999999999999999999999976431
Q ss_pred ---eeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHH
Q psy16366 399 ---LRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 399 ---~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
..++|++|++...++ ..|+.+++.. ..+... +.+.++++.+||. .... +++.+|||||||||+||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLIS-KSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhh-CCcccCCHHHHHHHHHHHH
Confidence 358999998743455 4688887642 122222 3457789999997 3444 5789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI-KHASPKEIF 233 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999999998865 469999999999999999999999999987 456666653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=332.42 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=168.5
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~ 403 (568)
|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEe-CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4689999999 567899999999999999999999999999999999999999999998642 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CCC-HHHHHHHHHhCC-CCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NLP-YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~~-~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
++|++. +++..|+.+++.... +.. .+.+.++++.++ +....+ .++.+|||||+|||+|||||+.+|++||||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~illlD 156 (230)
T TIGR03410 80 VPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLG-RRGGDLSGGQQQQLAIARALVTRPKLLLLD 156 (230)
T ss_pred eccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999874 677789988775321 222 233466777776 444443 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|.++ +.|||+||||.+++..+|++++++++|+++. .++.++..
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~~ 220 (230)
T TIGR03410 157 EPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDELD 220 (230)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHcC
Confidence 999999999999999998764 5799999999999999999999999999974 57776664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=334.46 Aligned_cols=200 Identities=25% Similarity=0.364 Sum_probs=167.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~------------~~~i 401 (568)
|+++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEE-CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4689999999 5678999999999999999999999999999999999995 79999998643 1238
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc---C-------CC----HHHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF---N-------LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALAE 466 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~---~-------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~lA~ 466 (568)
+|++|++. +++..|+.+++.... . .. .+.+.+++..+++......+++. .|||||||||+|||
T Consensus 80 ~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 89999874 677888888764211 0 11 13466789999997433234565 59999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+ |+++++|++|++. ..|+.+++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 999999999999999999999999999999876 47999999999999998 8999999999996 457776554
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=338.89 Aligned_cols=203 Identities=27% Similarity=0.372 Sum_probs=170.7
Q ss_pred eEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------- 397 (568)
+|+++||++.|++ ++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6889999999942 36799999999999999999999999999999999999999999997643
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..|+|++|++...+++..|+.+++.. ..... .+.+.++++.+|+.......++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 235999999874346667888887632 11222 23567789999996333345789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQL 238 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHH
Confidence 99999999999999999999999999998888764 6799999999999999999999999999974 4666554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=342.43 Aligned_cols=203 Identities=27% Similarity=0.404 Sum_probs=170.2
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.++++||++.|+++ +++|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999532 3699999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..|||++|++...++. .|+.+++... .+.+. +.+.+++..+||.......++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 23689999987545665 4888876431 12332 34567899999973333347899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 234 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKELF 234 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998764 5799999999999999999999999999974 56766643
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=333.52 Aligned_cols=198 Identities=29% Similarity=0.458 Sum_probs=169.5
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++||++.| ++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~-~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEe-CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999 45 6799999999999999999999999999999999999999999997643 246899
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
++|++ .+++..|+.+++... .+.. .+.+.++++.+++.. ..+ .++.+|||||+|||+|||||+.+|++
T Consensus 80 ~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 80 VIQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFAD-RYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred EccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHh-cChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99986 377778998887432 2222 234667899999985 444 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999998764 5799999999999999999999999999974 4666555
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=317.54 Aligned_cols=211 Identities=28% Similarity=0.412 Sum_probs=178.9
Q ss_pred eEEEEeeEEEeCCCce-eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKV-LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~-il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
||++.+++++|+ ... +++||||++..|+++||+|||||||||+||+|++++.|++|.|...+ +.+||.
T Consensus 1 Ml~v~~l~K~y~-~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYG-SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred Ceeeeehhhhcc-CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 578999999994 454 89999999999999999999999999999999999999999998642 567999
Q ss_pred EecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++-. ..++..+|+.|++.. .+++.. .++.++.+.|+|....++ +...||.|+||||+|||||+++|++||
T Consensus 80 l~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~r-Rv~~~S~G~kqkV~iARAlvh~P~i~v 156 (245)
T COG4555 80 LFGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDR-RVGEFSTGMKQKVAIARALVHDPSILV 156 (245)
T ss_pred ecCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHH-HHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence 8833 358999999998753 344443 345677889999988876 689999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH-HHHHHHHhhhh
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR-EKLLTSLGEAM 550 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~-~~~~~~~~~~~ 550 (568)
|||||||||+.+...+.+.+.+. +.+||++||++..++.+||+++++++|+++ +.|+.+.+. +...+.+.+.+
T Consensus 157 lDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l~~r~~~~~le~~f 233 (245)
T COG4555 157 LDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEALDARTVLRNLEEIF 233 (245)
T ss_pred EcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHHHHHHhhcCHHHHH
Confidence 99999999999999988888765 579999999999999999999999999997 567776654 33444444433
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=329.52 Aligned_cols=189 Identities=26% Similarity=0.420 Sum_probs=163.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~ 402 (568)
++++||++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 1 l~~~~l~~~~-~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEE-CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4689999999 567899999999999999999999999999999999999999999997643 23589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++. +++..++.+++... .+... +.+.+++..+|+....+ +++.+|||||+|||+|||||+.+|++
T Consensus 80 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999874 67778998876431 12222 34567899999987655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|||||||+|||+.++..+.+.|.++ +.|||++|||.+++..+|+++++|++|++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999865 56999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=335.94 Aligned_cols=201 Identities=31% Similarity=0.391 Sum_probs=171.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 58899999999 567899999999999999999999999999999999999999999998643 135899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc---CC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc------c
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF---NL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL------N 470 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~------~ 470 (568)
++|++. ++...|+.+++.... .. ....+..+++.++|....+ .++.+|||||||||+|||||+ .
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999864 556679988875321 11 1234667899999986555 478999999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++ ..++.+++..
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 99999999999999999999999988754 469999999999999999999999999987 4577777643
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=336.24 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=171.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+++++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEE-CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 58899999999 567899999999999999999999999999999999999999999998653 135999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-------cCC-C---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-------FNL-P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-------~~~-~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +++..|+.+++... ++. . ...+..++..+++....+ .++.+|||||+|||+||||++.+|
T Consensus 81 ~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 999864 66677888876431 111 1 234667899999976555 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||+|||+.++..+.++|.++ +.|||++|||++++.++|+++++|++|+++ ..++.+++.
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhc
Confidence 999999999999999999999998764 579999999999999999999999999987 457777764
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.14 Aligned_cols=202 Identities=25% Similarity=0.354 Sum_probs=169.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
++|+|+++||+++| +++++|+|+||+|.+|++++|+|||||||||||++|+|++. |++|+|.++.
T Consensus 3 ~~~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEE-CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 46899999999999 56789999999999999999999999999999999999864 5899997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++ .|+.+++... .+. . .+.+..+++.+++... ...+++.+|||||||||
T Consensus 82 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 82 VVELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 236999999873 566 4888876432 122 1 2345677888988531 22346899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 235 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQI 235 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999974 5666655
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=334.56 Aligned_cols=204 Identities=24% Similarity=0.330 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------------- 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 398 (568)
++|+++||++.| ++..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++..
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEe-CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 579999999999 5667999999999999999999999999999999999999999999976421
Q ss_pred -----eeEEEEecCCCCCCCCCCCHHHHHHHh---cC-C----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 399 -----LRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-L----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 399 -----~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
..++|++|++...++...++.+++... .. . ..+.+.++++.+++.......++..|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 248999998743445555665554211 11 1 1245677899999974233347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++.
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~ 237 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVL 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHh
Confidence 9999999999999999999999999998888653 6799999999999999999999999999974 46665553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=337.68 Aligned_cols=203 Identities=29% Similarity=0.461 Sum_probs=172.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~ 402 (568)
.+++++||+++|++.+.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+... ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 36899999999954557999999999999999999999999999999999999999999986431 3589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++...++ ..|+.+++... .+... +.+.++++.+++....+. ++..|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-VPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-CcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999743344 46888877421 12332 235678999999866554 78999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.+...+.++|+++ +.|||++|||++++.++|+++++|++|+++ ..|+.+++.
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 226 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIF 226 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHh
Confidence 999999999999999999988754 579999999999999999999999999997 457777764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=339.05 Aligned_cols=201 Identities=29% Similarity=0.408 Sum_probs=168.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
||+++||+++| +++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 1 ml~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEc-CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 47899999999 567899999999999999999999999999999999999999999997643 1358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++...++ ..++.+++.. ..+... +.+..+++.+|+.+..+ +++.+|||||||||+|||+|+.+|+|
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-QPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998742233 3466665432 122222 23567899999987655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5699999999999999999999999999874 56766653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=326.98 Aligned_cols=189 Identities=26% Similarity=0.375 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
+.++|+++.| +++. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 i~~~~l~~~~-~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSY-GEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEe-CCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 4689999999 4443 399999999999999999999999999999999999999998653 235999999
Q ss_pred CCCCCCCCCCCHHHHHHHhcC--C-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFN--L-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~--~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++..... . ....+.++++.+++....+. ++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-LPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-CcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 874 6777899988753211 1 12356778999999866554 789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 99999999999999998754 5799999999999999999999999999863
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=345.58 Aligned_cols=203 Identities=20% Similarity=0.269 Sum_probs=169.8
Q ss_pred CeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC----CCccEEEECC---------
Q psy16366 334 PVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT----PNKGELRKSP--------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~--------- 397 (568)
++|+++||++.|+ +...+|+||||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 4799999999994 23569999999999999999999999999999999999997 5889998643
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh---c---C---CC----HHHHHHHHHhCCCCCcc--ccCCCCCCCH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F---N---LP----YEKSRRQLGMFGLPSYA--HTIPIRDLSG 456 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~---~---~~----~~~~~~~L~~~~l~~~~--~~~~~~~LSg 456 (568)
+..|+|++|++...+++.+++.+.+... . + .. .+.+.++|+.+||.... ...++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1259999999865677888887765421 1 1 01 23567889999997532 2346899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN 532 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~ 532 (568)
||+|||+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++ .
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-T 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999999988763 6799999999999999999999999999975 3
Q ss_pred CCHHH
Q psy16366 533 GDFDD 537 (568)
Q Consensus 533 g~~~~ 537 (568)
|+.++
T Consensus 241 g~~~~ 245 (330)
T PRK15093 241 APSKE 245 (330)
T ss_pred CCHHH
Confidence 44433
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=331.13 Aligned_cols=201 Identities=22% Similarity=0.289 Sum_probs=169.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 4 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEee-CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 589999999999 567899999999999999999999999999999999999999999997643 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHHhC-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~----~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+|++|++. +++..|+.+++.... ... ...+.++++.+ ++....+ .++.+|||||||||+|||||+.+|+||
T Consensus 83 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999864 677789988775321 111 12345567777 4654444 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||+.++..+.+.|.++ +.|||++|||++++.++||++++|++|+++ ..|+.++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 225 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDALL 225 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHHh
Confidence 999999999999999999988754 579999999999999999999999999997 457777664
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=331.73 Aligned_cols=199 Identities=24% Similarity=0.324 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 397 (568)
+++++||+++| ++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++.
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEE-CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 47899999999 5668999999999999999999999999999999999999998 99997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CC----HHHHHHHHHhCCCC----CccccCCCCCCCHhHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LP----YEKSRRQLGMFGLP----SYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~----~~~~~~~L~~~~l~----~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+ .. .+.+..+++.+|+. .... .++.+|||||||||+|
T Consensus 80 ~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgG~~qrv~l 155 (247)
T TIGR00972 80 LRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLH-DSALGLSGGQQQRLCI 155 (247)
T ss_pred HHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhh-CCcccCCHHHHHHHHH
Confidence 235999999864 666 8888877532 12 12 13456789999997 4443 4789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++.+..+||++++|++|++.. .++.+++.
T Consensus 156 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 231 (247)
T TIGR00972 156 ARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQIF 231 (247)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999875 3699999999999999999999999999974 46666553
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=334.43 Aligned_cols=199 Identities=30% Similarity=0.447 Sum_probs=170.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------------ 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 397 (568)
++++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEe-CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4689999999 567899999999999999999999999999999999999999999987542
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++ .+++..|+.+++... .+... ..+.++++.+|+....+ .++.+|||||+|||+
T Consensus 80 ~~~~~~~~~i~~v~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSF--NLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCc--ccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHH
Confidence 23599999986 377778998877531 12222 34667899999986555 467999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIF 235 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999999988754 5799999999999999999999999999974 56766653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=328.38 Aligned_cols=200 Identities=29% Similarity=0.380 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+++++||+++|+ +.. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999994 433 499999999999999999999999999999999999999998653 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--CC--C---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--NL--P---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~~--~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+++..|+.+++.... .. . ...+.++++.+|+....+ +++..|||||||||+||||++.+|++||||
T Consensus 78 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QEN--NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred ccc--ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986 3777789988875321 11 1 234677899999986555 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
|||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|.+|++. ..|+.+++.+.
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~~ 220 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLSG 220 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 999999999999999988754 569999999999999999999999999997 56788777643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=337.41 Aligned_cols=202 Identities=30% Similarity=0.487 Sum_probs=171.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i 401 (568)
+|.++||++.|++.+++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++. +..|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999995456799999999999999999999999999999999999999999997643 2358
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++...++ ..|+.+++... .+... +.+.++++.++|.+..+ +++.+|||||+||++|||||+.+|++
T Consensus 81 ~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998743344 35888876421 12222 34667899999987665 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVF 225 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999865 5799999999999999999999999999974 57777764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=325.43 Aligned_cols=192 Identities=28% Similarity=0.439 Sum_probs=165.7
Q ss_pred CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeE
Q psy16366 330 YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRI 401 (568)
Q Consensus 330 ~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i 401 (568)
..++++|.++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 6 ~~~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 6 HTAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred CCCcceEEEeeEEEec-CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 3456789999999999 567899999999999999999999999999999999999999999998754 2348
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
+|++|++. +++..|+.+++... .+. ..+.++.++..+++..... .++..|||||||||+|||+++.+|++|||
T Consensus 85 ~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 161 (214)
T PRK13543 85 AYLGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKKRLALARLWLSPAPLWLL 161 (214)
T ss_pred EEeecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999763 67777888876432 122 2345677899999987654 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||||++||+.+++.+.+.|.++ +.|||++|||.+++.++|+++|++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999765 68999999999999999999999863
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=335.74 Aligned_cols=201 Identities=28% Similarity=0.346 Sum_probs=172.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..|+++||+++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++
T Consensus 6 ~~l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEE-CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 478999999999 567899999999999999999999999999999999999999999998653 13589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cC-------CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FN-------LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~-------~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++...++.+++... .. .. ...+..+++.+++....+ +++.+||||||||++||||++.+
T Consensus 85 ~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 85 LLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred EeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCChHHHHHHHHHHHHhcC
Confidence 9999874 66677888876431 10 11 234667899999986554 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999988764 5699999999999999999999999999874 57776654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.86 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=169.8
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRI 401 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i 401 (568)
.++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 26 ~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKT-GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhc-CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 467999999 678899999999999999999999999999999999999999999997642 1369
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+|++|++. +++..|+.+++... .+.. .+.+.++++.++|....+ +++.+|||||||||+|||||+.+|+|
T Consensus 105 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999863 67778998877532 1222 234667899999986655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999988765 5799999999999999999999999999974 46666654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=337.97 Aligned_cols=203 Identities=30% Similarity=0.416 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
.|+++||++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 37899999999532 3699999999999999999999999999999999999999999997643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..|+|++|++...++. .|+.+++... .+... ..+.++++.++|......+++.+|||||||||+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 13589999986334554 5888876421 22332 23567788999974333457899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999998765 5799999999999999999999999999874 46666653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=343.26 Aligned_cols=215 Identities=25% Similarity=0.360 Sum_probs=177.0
Q ss_pred CCCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC-------
Q psy16366 332 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR------- 398 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------- 398 (568)
..++|+++|+++.|+. ...+++||||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 4578999999999942 246999999999999999999999999999999999999996 999986531
Q ss_pred --------eeEEEEecCCCCCCCCCCCHHHHHHH---hc-CCCH----HHHHHHHHhCCCCCcc--ccCCCCCCCHhHHH
Q psy16366 399 --------LRIGKFDQHSGEHLFPDDTPCEYLMK---LF-NLPY----EKSRRQLGMFGLPSYA--HTIPIRDLSGGQKA 460 (568)
Q Consensus 399 --------~~i~~~~q~~~~~l~~~~~~~e~l~~---~~-~~~~----~~~~~~L~~~~l~~~~--~~~~~~~LSgGqkq 460 (568)
..|+|++|++...+++.+++.+++.. .. +... +.+.++|+.++|+... ....+.+|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 36999999986668888888776542 12 2332 3456789999997521 23467999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
||+|||||+.+|+|||+||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.+
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~~ 247 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNAR 247 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHH
Confidence 999999999999999999999999999999998888654 67999999999999999999999999999864 4443
Q ss_pred --------HHHHHHHHHHh
Q psy16366 537 --------DYREKLLTSLG 547 (568)
Q Consensus 537 --------~~~~~~~~~~~ 547 (568)
.|.+.++..+.
T Consensus 248 ~i~~~p~~pyt~~l~~~~~ 266 (330)
T PRK09473 248 DVFYQPSHPYSIGLLNAVP 266 (330)
T ss_pred HHHhCCCCHHHHHHHHhCC
Confidence 35555655543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=349.07 Aligned_cols=198 Identities=25% Similarity=0.334 Sum_probs=165.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Cee
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLR 400 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ 400 (568)
++..++...| +...+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3344444444 334589999999999999999999999999999999999999999998643 136
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +|+..|+.+++... .+... +.+.++|+.+||....+. ++.+|||||||||+|||||+.+|+
T Consensus 108 igyv~Q~~~--l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 108 IAMVFQSFA--LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-YPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred EEEEECCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-CcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999874 78888999987532 23332 346678999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 185 iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l 252 (400)
T PRK10070 185 ILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEI 252 (400)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHH
Confidence 99999999999999999999988654 5799999999999999999999999999974 5666554
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=333.17 Aligned_cols=200 Identities=27% Similarity=0.356 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 2 l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 5789999999 567899999999999999999999999999999999999999999998753 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHh-------cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKL-------FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~-------~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+|++. ++...|+.+++... .... .+.+.++++.+++....+ .++..|||||+|||+|||||+.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99873 55667888877431 1111 134667899999976555 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||++||+.++..+.++|.++ +.|||++|||++++..+||++++|++|+++ ..|+.+++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVV-AAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEE-EecCHHHhhC
Confidence 99999999999999999999999866 579999999999999999999999999987 4577777643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=320.31 Aligned_cols=202 Identities=27% Similarity=0.459 Sum_probs=182.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------CeeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------RLRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------~~~i~~~~q~ 407 (568)
.|++++|+++| +++.+++|+||++++|++.|++|||||||||.+|+|.|++.|++|+|.++. ..+|||+|-.
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 58899999999 889999999999999999999999999999999999999999999999875 3589999987
Q ss_pred CCCCCCCCCCHHHHH---HHhcCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 408 SGEHLFPDDTPCEYL---MKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l---~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
. .+++.+|+.+.+ ....+.+.++ +..||+++++..+... ++.+||-|++|++.+..+++++|+++|||||
T Consensus 81 R--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~-kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 R--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred h--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccc-hHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 6 499999998854 4556777654 4578999999988764 8999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
||||||-+.+.|.+++.++ +.|||++||.++-++++||++++|.+|+.+ +.|+..+.++.
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V-~~G~v~~ir~~ 220 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV-LYGTVEDIRRS 220 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE-EeccHHHHHHh
Confidence 9999999999999988654 789999999999999999999999999987 57998888774
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=366.30 Aligned_cols=204 Identities=29% Similarity=0.485 Sum_probs=177.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++++++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++....|||++|++. ++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--LD 80 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--CC
Confidence 4799999999994267899999999999999999999999999999999999999999999877778999999874 67
Q ss_pred CCCCHHHHHHHhc-----------------CCC-H-------------------------HHHHHHHHhCCCCCccccCC
Q psy16366 414 PDDTPCEYLMKLF-----------------NLP-Y-------------------------EKSRRQLGMFGLPSYAHTIP 450 (568)
Q Consensus 414 ~~~~~~e~l~~~~-----------------~~~-~-------------------------~~~~~~L~~~~l~~~~~~~~ 450 (568)
+..|+.+++.... ... . ..+..++..+|+.. . ..+
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-DAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-cCc
Confidence 7788888764210 000 1 12345677788853 3 357
Q ss_pred CCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 451 IRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 451 ~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+|||||||||+|||+|+.+|++|||||||||||+.++..|.+.|.++++|||+||||++++..+|+++++|++|+++.
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 238 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999999998899999999999999999999999999887
Q ss_pred EcCCHHHHHHH
Q psy16366 531 FNGDFDDYREK 541 (568)
Q Consensus 531 ~~g~~~~~~~~ 541 (568)
+.|++++|.+.
T Consensus 239 ~~g~~~~~~~~ 249 (552)
T TIGR03719 239 WEGNYSSWLEQ 249 (552)
T ss_pred ecCCHHHHHHH
Confidence 89999987653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=329.55 Aligned_cols=202 Identities=26% Similarity=0.308 Sum_probs=170.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++++++||++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEE-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 368999999999 567899999999999999999999999999999999999974 699997643
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..|+|++|++. +++..|+.+++.... .. . .+.+.++++.+++... ....++.+|||||||||+||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 246999999874 567789988874321 11 1 1345678999998531 22357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++. ..|+.+++.
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIV-EWGPTREVF 233 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEE-EECCHHHHH
Confidence 9999999999999999999999999999999875 479999999999999999999999999986 457776654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=336.35 Aligned_cols=202 Identities=28% Similarity=0.391 Sum_probs=170.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 47899999999953 24699999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. .++...|+.+++... .+.+. ..+.++++.+||.+..+ +++.+|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 244567888877432 22332 34677899999987655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.++|.++ +.|||+||||++++. .|+++++|++|+++. .|+.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999988754 579999999999994 799999999999874 57766643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=335.22 Aligned_cols=201 Identities=31% Similarity=0.451 Sum_probs=168.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~ 402 (568)
+++++|+++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995456799999999999999999999999999999999999999999997642 13589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++... +...|+.+++... .+.+ .+.+..+++.+|+....+ .++..|||||+|||+|||||+.+|+||
T Consensus 81 ~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999987433 3446888876431 1222 234567899999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.++|.++ +.|||++|||++.+. .|+++++|++|+++ ..|+.+++.
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999998754 579999999999995 69999999999997 457766653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=347.10 Aligned_cols=191 Identities=27% Similarity=0.385 Sum_probs=165.7
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCC
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHS 408 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~ 408 (568)
.| +++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++. +..++|++|++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46 677899999999999999999999999999999999999999999998643 34799999987
Q ss_pred CCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 409 GEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
.+|+.+|+.+++... .+.+. +.+.++|+.+||..+.+. ++.+|||||||||+|||||+.+|+||||||||
T Consensus 81 --~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~-~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 --ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR-YPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred --cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 488999999887532 23332 446778999999876654 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++||+.++..+.+.|.++ +.|||+||||++++..+|++|++|++|+++. .|+++++.
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 999999999999988654 6799999999999999999999999999975 46666543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=331.06 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=169.3
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|+++|+++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 9 ~~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 9 AQPQIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred cceeEEEeeeEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 35689999999999 567899999999999999999999999999999999999985 799987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+... ..+.++++.+++.. .....++.+|||||+|||+
T Consensus 88 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 88 VVELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence 235899999874 566 7888877532 23332 23567889898842 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|+++++|++|++.. .|+.+++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 240 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQI 240 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999875 4799999999999999999999999999974 4666654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=330.10 Aligned_cols=202 Identities=24% Similarity=0.270 Sum_probs=168.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+..
T Consensus 5 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEe-CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 4589999999999 567899999999999999999999999999999999999997 489987632
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. ++. .|+.+++... .+. . .+.+..++..+++.. .....++.+|||||||||+
T Consensus 84 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPN--PFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeeccc--ccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 235999999874 453 7888877432 121 1 234566788888731 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999974 46666553
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=332.17 Aligned_cols=203 Identities=24% Similarity=0.318 Sum_probs=168.2
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
+.++++++|+++.| +++.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 18 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYY-GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEe-CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35689999999999 56789999999999999999999999999999999999864 7899987542
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... ... . .+.+...+..+++.. .....++.+|||||||||
T Consensus 97 ~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 236999999874 5554 888876532 111 1 123556788888752 122347899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|++|||||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .++.+++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 4699999999999999999999999999974 46666553
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=334.96 Aligned_cols=203 Identities=29% Similarity=0.418 Sum_probs=171.3
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 468999999999953 35799999999999999999999999999999999999999999997653 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|+|++|++. .++...|+.+++... .+.+. ..+..++..+||...... ++..|||||||||+|||||+.+|+
T Consensus 83 i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~~~p~ 160 (279)
T PRK13635 83 VGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-EPHRLSGGQKQRVAIAGVLALQPD 160 (279)
T ss_pred eEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 999999873 244557888877432 22232 346778999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++. .|+++++|.+|+++ ..|+.++..
T Consensus 161 lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 161 IIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999764 569999999999997 49999999999986 456666543
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=341.11 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=168.6
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECCC---------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSPR--------- 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~--------- 398 (568)
+|+++||++.|++. ..+|+||||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999432 4699999999999999999999999999999999999974 8899976431
Q ss_pred ------eeEEEEecCCCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHHhCCCCCc--cccCCCCCCCHhHHHHH
Q psy16366 399 ------LRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARV 462 (568)
Q Consensus 399 ------~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~----~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqRv 462 (568)
..|+|++|++...+++.+++.+.+... .+.. .+.+.++|+.+||... ...+++.+|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 259999999865678888876654321 1222 2446788999999742 22347899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+|||||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||+.++..+||++++|.+|++++. |+.++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~ 240 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHD 240 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 9999999999999999999999999999999988764 57999999999999999999999999999864 44433
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=336.44 Aligned_cols=203 Identities=24% Similarity=0.308 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------ 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 397 (568)
..|+++|+++.|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 458999999999432 2599999999999999999999999999999999999999999987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..|+|++|++...++. .|+.+++... .+... ..+..+++.++|+.....+++.+|||||||||+|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred HHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 23589999987433443 4787776421 12222 235568899999532334578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 238 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS-IGSPFEI 238 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999888754 5799999999999999999999999999874 4666664
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=329.46 Aligned_cols=202 Identities=25% Similarity=0.332 Sum_probs=168.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|..+.
T Consensus 11 ~~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEe-CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 4679999999999 56789999999999999999999999999999999999986 5899987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+.+++|++|++. +++ .|+.+++... . +.+. +.+.++++.+++.. .....++.+|||||+|||+
T Consensus 90 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 236999999874 555 6888876432 1 2222 34567888998742 1223467899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 243 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE-FGNTDTIF 243 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999975 46666653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=331.15 Aligned_cols=323 Identities=23% Similarity=0.306 Sum_probs=214.3
Q ss_pred CCChHHHHHHHHHhcCCCc----cCCCch-H------------HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 177 ADAAEPRARRILAGLGFTT----IYIPSS-R------------VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 177 ~~~~~~~~~~~L~~lg~~~----L~~ePn-~------------L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
..+++.-+|.+++..-... +||||. | +.++.+. +++||||+||+..|+-++|-|-++...
T Consensus 213 ~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG~-- 289 (591)
T COG1245 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYGE-- 289 (591)
T ss_pred hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEecC--
Confidence 3455555555554332222 899993 3 3344444 789999999999999988877666432
Q ss_pred eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccc
Q psy16366 240 FYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREY 319 (568)
Q Consensus 240 ~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (568)
.|-|..+...+.- +.....| .+- ..++-.-+.+.+
T Consensus 290 ---pg~YGvvs~p~sv--r~gIN~y----------------------------L~G------------yl~~EN~R~R~~ 324 (591)
T COG1245 290 ---PGVYGVVSKPKSV--RVGINEY----------------------------LKG------------YLPEENVRFRPE 324 (591)
T ss_pred ---CccceEeccchHH--HHHHHHH----------------------------Hhc------------cCchhccccccc
Confidence 3444433221110 0000100 000 000000011222
Q ss_pred eeeeecCCCCCC-C-CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC
Q psy16366 320 IVKFRFPNPPYL-P-PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP 397 (568)
Q Consensus 320 ~~~~~~~~~~~~-~-~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 397 (568)
...|...++... . ..+++..++++.| ++ .-|.-=.=+|..||+++++||||.|||||.++|+|.++|++|. ..
T Consensus 325 ~I~F~~~~~~~~~~~~~lv~y~~~~k~~-g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~---~~ 399 (591)
T COG1245 325 EIEFEEKPPRDDKARDTLVEYPDLKKTY-GD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS---EE 399 (591)
T ss_pred ceeeeccCcccccccceeeecchheeec-Cc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC---Cc
Confidence 344444333221 2 4567777888888 33 3344444567788999999999999999999999999999998 55
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHhcC--C-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--L-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~--~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
..+++|-||--.. ..+.|+.+++..... . +..-..+++.-+.|+....+ ++..|||||.|||+||.+|.++++|
T Consensus 400 ~~~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~-~v~~LSGGELQRvaIaa~L~reADl 476 (591)
T COG1245 400 DLKVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLER-PVDELSGGELQRVAIAAALSREADL 476 (591)
T ss_pred cceEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhc-ccccCCchhHHHHHHHHHhccccCE
Confidence 6789999986532 245688887764322 1 11223456778888876664 8999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECC--eEEEEcC--CHHHHHHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKK--NIRKFNG--DFDDYREKLLTSL 546 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g--~i~~~~g--~~~~~~~~~~~~~ 546 (568)
+|||||+++||.+.+-.+.+.|+++ +.|.++|-||+.++..++|++++++.- .--...+ +..+=.+.+++.+
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr~GMN~FLk~l 556 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMREGMNRFLKNL 556 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHHHHHHHHHHHc
Confidence 9999999999999988888888765 679999999999999999999998732 1111122 2334457788888
Q ss_pred hhhhhcCCc
Q psy16366 547 GEAMVYNPS 555 (568)
Q Consensus 547 ~~~~~~~~~ 555 (568)
+..+..+|.
T Consensus 557 ~vTFRRD~~ 565 (591)
T COG1245 557 GVTFRRDPE 565 (591)
T ss_pred CcEEecCcc
Confidence 877754443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=360.91 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=176.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++|+++.| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..
T Consensus 9 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEe-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3589999999999 567899999999999999999999999999999999999999999998653 135
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCC---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNL---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++|++. +++..|+.+++...... ..+.+.++++.+++....+ +++.+|||||||||+|||||+.+|+||||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999874 77888999987532211 1345678899999986655 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ ..|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcC
Confidence 9999999999999999998765 579999999999999999999999999997 468887774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.60 Aligned_cols=203 Identities=21% Similarity=0.274 Sum_probs=169.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECC---------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSP---------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~ 400 (568)
.+|+++||+++| + +++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|..+. +..
T Consensus 3 ~~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 80 (254)
T PRK10418 3 QQIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRK 80 (254)
T ss_pred cEEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccce
Confidence 368999999999 3 5799999999999999999999999999999999999999 999998643 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHH---hcCC--CHHHHHHHHHhCCCCCc--cccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMK---LFNL--PYEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~---~~~~--~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++...+.+..++.++... ..+. ..+.+.++++.+++... ....++.+|||||+|||+|||||+.+|+
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 999999974334455666655432 1222 23457788999999762 1234789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.+...+.++|.++ +.|||+||||++.+..+|+++|+|++|+++. .++.+++.
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 229 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETLF 229 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999998888764 5799999999999999999999999999974 56666653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=327.94 Aligned_cols=202 Identities=24% Similarity=0.277 Sum_probs=169.6
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYY-GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEe-CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 478999999999 567899999999999999999999999999999999999987 499997642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++..|+.+++... .+. .. ..+..+++.+++... ....++.+|||||||||+
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 235899999864 67778998877532 121 21 235677888887531 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999974 56666653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=378.45 Aligned_cols=197 Identities=24% Similarity=0.318 Sum_probs=163.1
Q ss_pred eEEEEeeEEEeC------------CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC---
Q psy16366 335 VLGLHDVTFGYP------------GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP--- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~------------~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~--- 397 (568)
.+.++||++.++ +.+.+|+|||+.|++|++++|+|||||||||||++|+|..++ .+|+|.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 588999998873 124699999999999999999999999999999999999763 689998753
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh--c----CCCH----HHHHHHHHhCCCCCccccCCC-----CCCCHh
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F----NLPY----EKSRRQLGMFGLPSYAHTIPI-----RDLSGG 457 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~----~~~~----~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 457 (568)
+..+||++|++. +++..|+.|.+... . ..+. +.+.++++.++|.+..+. .+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~-~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDA-IVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCC-ccCCCCCCCcCHH
Confidence 235899999863 67889999987531 1 1222 236678999999876554 33 589999
Q ss_pred HHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEEC-CeEEEEc
Q psy16366 458 QKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRKFN 532 (568)
Q Consensus 458 qkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~-g~i~~~~ 532 (568)
|||||+||++|+.+|+||+|||||+|||..+...+++.|+++ +.|||++||+++ .+.+.+|++++|.+ |+++ +.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999999775 679999999998 47788999999997 7776 45
Q ss_pred CCH
Q psy16366 533 GDF 535 (568)
Q Consensus 533 g~~ 535 (568)
|+.
T Consensus 1103 G~~ 1105 (1470)
T PLN03140 1103 GPL 1105 (1470)
T ss_pred CCc
Confidence 553
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=328.73 Aligned_cols=202 Identities=26% Similarity=0.346 Sum_probs=169.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|+++||++.| +++++|+|+||+|++|++++|+|||||||||||++|+|+++| ++|+|.+..
T Consensus 16 ~~~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEE-CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 45689999999999 567899999999999999999999999999999999999975 899997543
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. |+.+++... .+. . ...+..+++.+++... ....++.+||||||||
T Consensus 95 ~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 171 (267)
T PRK14235 95 VVELRARVGMVFQKPN--PFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQR 171 (267)
T ss_pred hHHHhhceEEEecCCC--CCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 235899999874 5554 888876431 121 1 2345678999999641 2234689999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++
T Consensus 172 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14235 172 LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKM 249 (267)
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999999876 4699999999999999999999999999974 4666655
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=366.68 Aligned_cols=201 Identities=30% Similarity=0.565 Sum_probs=171.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+|+++||+++| +++++|+||||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.....++|++|.+.. ..
T Consensus 3 ~l~i~~ls~~~-~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~--~~ 79 (635)
T PRK11147 3 LISIHGAWLSF-SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR--NV 79 (635)
T ss_pred EEEEeeEEEEe-CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCC--CC
Confidence 78999999999 6678999999999999999999999999999999999999999999998876678999886531 11
Q ss_pred CCCHHHHHH------------------------------H---h---c----CC-CHHHHHHHHHhCCCCCccccCCCCC
Q psy16366 415 DDTPCEYLM------------------------------K---L---F----NL-PYEKSRRQLGMFGLPSYAHTIPIRD 453 (568)
Q Consensus 415 ~~~~~e~l~------------------------------~---~---~----~~-~~~~~~~~L~~~~l~~~~~~~~~~~ 453 (568)
..++.+++. . . . +. ....+..+|..+||.. .+++.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~ 156 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSS 156 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhh
Confidence 122222210 0 0 0 00 1235677899999963 457899
Q ss_pred CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
|||||||||+|||+|+.+|+||||||||||||+.++.+|.+.|.++++|||+||||++++..+|+++|+|++|+++.+.|
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred CHHHHHHH
Q psy16366 534 DFDDYREK 541 (568)
Q Consensus 534 ~~~~~~~~ 541 (568)
+|++|.+.
T Consensus 237 ~~~~~~~~ 244 (635)
T PRK11147 237 NYDQYLLE 244 (635)
T ss_pred CHHHHHHH
Confidence 99988643
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=342.18 Aligned_cols=197 Identities=25% Similarity=0.383 Sum_probs=168.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
+|++ ||+++| +++. + |+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +.
T Consensus 1 ~l~~-~l~k~~-~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQL-GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEe-CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4677 999999 5543 3 99999999999999999999999999999999999999997532 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
.++|++|++ .+|+.+|+.+++.... ....+.+.++++.+||....+ +++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDA--RLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCc--ccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 699999987 4788899999875322 223456778999999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 154 EPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~i~ 217 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA-FGPLEEVW 217 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE-ecCHHHHH
Confidence 999999999999999888754 5799999999999999999999999999975 46666543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=330.51 Aligned_cols=203 Identities=27% Similarity=0.363 Sum_probs=169.5
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++||++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47899999999952 46899999999999999999999999999999999999999999997643
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++...+++..++.+++... .+... ..+.+++..+|+.......++..|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 2369999998744466677887765321 12222 246778999999643334578999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .|+.++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~ 238 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE-TQPVGD 238 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee-eCChhh
Confidence 999999999999999999999999999988888654 5799999999999999999999999999874 455444
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=323.29 Aligned_cols=187 Identities=30% Similarity=0.430 Sum_probs=160.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 5 ~~~i~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLA-GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEee-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4689999999999 567899999999999999999999999999999999999999999998653 2468
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
+|++|++. +++ .|+.+++... ... ....+..+++.+++.......++.+|||||+|||+|||+|+.+|++||
T Consensus 84 ~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999864 555 4888876421 121 234566889999996433345789999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
|||||++||+.++..+.++|.++ +.|||+||||.+++. .|+++++|+
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEe
Confidence 99999999999999999988765 569999999999996 699999996
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=319.94 Aligned_cols=189 Identities=28% Similarity=0.404 Sum_probs=163.1
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++||++.|+ . .+.|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 46899999994 2 57899999999999999999999999999999999999999998643 245999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc--CC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF--NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~--~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++.... .. ....+.++++.+|+....+ +++.+|||||+|||+|||+|+.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 974 777789988875321 11 1235667899999986654 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||++||+.+...+.++|.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999988764 5699999999999999999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=320.65 Aligned_cols=184 Identities=28% Similarity=0.348 Sum_probs=158.4
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~ 404 (568)
+|+++| +++.+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 5 ~l~~~~-~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRL-PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEec-CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 899999 55555 99999999 99999999999999999999999999999987643 2359999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
+|++ .+++..|+.+++...... ....+.++++.+++..... .++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 81 FQQY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred ecCC--ccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9986 367778998876432111 1234677899999986554 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+|||+.+++.+.++|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999998764 5799999999999999999999999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=332.34 Aligned_cols=202 Identities=25% Similarity=0.365 Sum_probs=170.2
Q ss_pred CeEEEEeeEEEeCC-----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
++|+++|++++|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999953 25799999999999999999999999999999999999999999997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..+||++|++...++. .++.+++... .+... ..+..+++.+||....+. ++.+|||||||||+|||+|+
T Consensus 83 ~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-APHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-CcccCCHHHHHHHHHHHHHH
Confidence 23589999987544553 5777765421 12232 346678999999876654 78999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|+++. .|+.+++.
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999999998764 5699999999999976 99999999999874 57777654
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=331.40 Aligned_cols=201 Identities=22% Similarity=0.270 Sum_probs=165.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEec
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQ 406 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q 406 (568)
.|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6899999999954578999999999999999999999999999999999999999999986541 35999999
Q ss_pred CCCCCCCCCCCHHHHHHH-------hcCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 407 HSGEHLFPDDTPCEYLMK-------LFNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~-------~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
++........++.+++.. .... ..+.+..+++.+|+....+ +++.+|||||||||+|||||+.+|+||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 874222222344444321 0011 1234567889999987655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||++||+.+...+.++|.++ +.|||+||||++++..+|++++++ +|+++. .|+.+++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 999999999999999999999765 569999999999999999999777 899864 5666664
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=330.37 Aligned_cols=202 Identities=27% Similarity=0.408 Sum_probs=170.3
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.++++++|+++.|+ +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999995 246799999999999999999999999999999999999999999997642 245
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. ..+...|+.+++... .+.... .+.++++.+++....+. ++.+|||||+||++|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDK-EPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 234567888877432 122322 35678899999876654 679999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||+|||+.++..+.++|.++ +.|||+||||++++. .|+++++|.+|++.. .|+.+++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 229 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEI 229 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999865 369999999999996 799999999999974 4666654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=331.54 Aligned_cols=203 Identities=25% Similarity=0.336 Sum_probs=169.1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC--------
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP-------- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~-------- 397 (568)
.+.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 35 ~~~~~l~i~~l~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 356789999999999 56789999999999999999999999999999999999987 6899987642
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC---HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~---~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++. ++.+++... .+.. .+.+..+++.+++... ....++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 236899999873 5654 888876432 1222 2346778889988531 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEE-EEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELW-ALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~-~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|++++ +|++|+++. .++.+++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~-~g~~~~~ 267 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE-FDDTDKI 267 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999877 4699999999999999999975 579999975 4666554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=322.11 Aligned_cols=199 Identities=30% Similarity=0.458 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|.++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+.|+|.+.. +..++|++|
T Consensus 1 l~~~~l~~~~-~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999997643 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. ++...++.+++.... +.. ...+..+++.+|+....+. .+..||+||+|||+|||||+.+|++|||||
T Consensus 80 ~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-KPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 864 666778888765321 222 2345678899999876654 679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++.. .++.+++.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~-~~~~~~~~ 219 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ-IGTPEEIY 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHHH
Confidence 99999999999999998764 5799999999999999999999999999974 46655543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=318.35 Aligned_cols=185 Identities=27% Similarity=0.409 Sum_probs=161.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACER-DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEE-CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998653 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+|++ .+++..|+.+++.... + .....+.++++.+|+....+ +++.+|||||||||+||+||+.+|++||||||
T Consensus 80 ~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCcc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9876 3677789998874321 2 23456778999999986655 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|++||+.++..+.++|.++ +.|||+||||.+++..+..+++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999876 579999999999999888888766
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=329.95 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=169.7
Q ss_pred CCeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
+++|+++|+++.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 5689999999999533 4699999999999999999999999999999999999999999998653 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. .++...++.+++... .+... +.+..+++.+++....+. ++.+|||||||||+|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-EPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-CcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999873 245556776655321 12222 345678999999866554 689999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.++..+.+.|.++ +.|||+||||.+++.. ||++++|++|++.. .|+.+++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999988764 5699999999999985 99999999999974 57766654
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=306.87 Aligned_cols=165 Identities=30% Similarity=0.386 Sum_probs=148.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|+++.|++++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++. ++ .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--cc-c
Confidence 46899999995456899999999999999999999999999999999999999999999988788999999874 33 4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
.|+.+++... ++..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 78 ~tv~~nl~~~------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~ 133 (166)
T cd03223 78 GTLREQLIYP------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133 (166)
T ss_pred ccHHHHhhcc------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHH
Confidence 6887776421 3478999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 496 IKNYQGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
|.+++.|||+||||.+++ .+||++++|+++..
T Consensus 134 l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~~ 165 (166)
T cd03223 134 LKELGITVISVGHRPSLW-KFHDRVLDLDGEGG 165 (166)
T ss_pred HHHhCCEEEEEeCChhHH-hhCCEEEEEcCCCC
Confidence 999988999999999876 58999999988753
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=325.80 Aligned_cols=200 Identities=25% Similarity=0.321 Sum_probs=167.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
+++++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++| ++|+|.++.
T Consensus 4 ~l~i~~v~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYY-GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEE-CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 68999999999 567899999999999999999999999999999999999974 699998643
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++..|+.+++... .+. .. +.+.++++.+++.. .....++.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 135999999864 67778998887532 121 22 23556788888842 223357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE------CCeEEEEcCCHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE------KKNIRKFNGDFDD 537 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~------~g~i~~~~g~~~~ 537 (568)
|||+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||++++..+|+++++|. +|+++. .|+.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~ 239 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEK 239 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999997 798874 567666
Q ss_pred H
Q psy16366 538 Y 538 (568)
Q Consensus 538 ~ 538 (568)
+
T Consensus 240 ~ 240 (258)
T PRK14241 240 I 240 (258)
T ss_pred H
Confidence 5
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=325.54 Aligned_cols=201 Identities=23% Similarity=0.294 Sum_probs=168.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.|+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEE-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4689999999999 567899999999999999999999999999999999999875 789987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. ..+.++++.+++.. .....++.+|||||||||+
T Consensus 81 ~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 245999999874 565 7888876521 222 11 23556788888742 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.. ++.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF-NKTEKI 233 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe-CCHHHH
Confidence 999999999999999999999999999999999876 47999999999999999999999999999754 666554
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=321.98 Aligned_cols=200 Identities=30% Similarity=0.412 Sum_probs=162.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-|+++|+++.|++.+++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 378999999994345799999999999999999999999999999999999999999998653 345999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. ++.. |+.+++.... ......+...+..+++ ..... .++.+|||||||||+|||+|+.+
T Consensus 82 ~~q~~~--~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 82 VLQDTF--LFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred ecCCch--hhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcC
Confidence 999863 5554 8888765322 1223344444444443 32222 35789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++.. |+++++|.+|++.. .++++++..
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~~ 226 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELLA 226 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHHh
Confidence 9999999999999999999999999876 4699999999999964 99999999999974 577766643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=360.08 Aligned_cols=202 Identities=23% Similarity=0.298 Sum_probs=174.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.. +..
T Consensus 3 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3689999999999 567899999999999999999999999999999999999999999998643 135
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-------cCC---C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-------FNL---P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-------~~~---~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
++|++|++. +++..|+.+++... .+. . .+.+.++|..+|+....+ +++.+|||||||||+|||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~ 158 (510)
T PRK09700 82 IGIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAK 158 (510)
T ss_pred eEEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHH
Confidence 999999863 67788998876421 111 1 134567899999986654 578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++ +.|+++++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 233 (510)
T PRK09700 159 TLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVS 233 (510)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCC
Confidence 999999999999999999999999999998765 579999999999999999999999999996 567777653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=330.28 Aligned_cols=203 Identities=28% Similarity=0.400 Sum_probs=170.7
Q ss_pred CCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc---cEEEECC-----------
Q psy16366 333 PPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK---GELRKSP----------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~---G~i~~~~----------- 397 (568)
.++|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|.++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 458999999999953 2469999999999999999999999999999999999999987 8987543
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+..+||++|++.. ++...|+.+++.. ..+... +.+.++++.+||....+ +++..|||||+|||+|||||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHc
Confidence 2468999998742 3456788887752 122333 33667899999987665 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||+|||+.+...+.+.|.++ +.|||+||||++++. .|+++++|.+|+++. .|+.+++.
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 231 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIF 231 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999998764 569999999999995 799999999999975 56666653
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=325.17 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=169.1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC--------
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP-------- 397 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~-------- 397 (568)
...++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 8 ~~~~~l~i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 8 MKQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred cCCceEEEeeEEEEE-CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 345789999999999 56789999999999999999999999999999999999987 3 589987532
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. ++.+++... .+. .. ..+..+++.+++... ....++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 235899999874 5554 888876421 221 21 235567888888531 2234789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|||+|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 242 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMF 242 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999999999999999999999999999999876 4699999999999999999999999999974 57766653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=320.35 Aligned_cols=191 Identities=30% Similarity=0.470 Sum_probs=161.4
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 6799999999432 5799999999999999999999999999999999999999999998754 236999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. ++. .|+.+++..... .....+..++..+++.+..+.. ++.+|||||||||+||||++.+|
T Consensus 83 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 83 VPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred eCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999874 454 588887643221 2344566778888887544432 24699999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
++|||||||+|||+.++..+.+.|.++. .|||+||||++++ ++||++++|++|+++.
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 9999999999999999999999998863 5999999999987 6999999999999863
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=324.12 Aligned_cols=201 Identities=25% Similarity=0.336 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC---cCC--CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTP--NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~---~~p--~~G~i~~~~----------- 397 (568)
++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+ ++| ++|+|.++.
T Consensus 2 ~~l~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEE-CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 689999999999 567899999999999999999999999999999999997 455 589987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+. . ...+.++++.+++... ....++.+|||||||||+|
T Consensus 81 ~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 235999999874 555 5888876432 121 1 1345678888998542 2234788999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||.+++.++||++++|++|+++. .|+.+++.
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~ 233 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIF 233 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHh
Confidence 99999999999999999999999999999999876 4699999999999999999999999999974 46666653
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=309.48 Aligned_cols=203 Identities=27% Similarity=0.408 Sum_probs=173.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++||+..| |..++|++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.+.. +..|
T Consensus 2 ~mL~v~~l~~~Y-G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecc-cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 589999999999 778999999999999999999999999999999999999999999998753 3569
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCC---H--HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLP---Y--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~---~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
+|+||-. .+|+.+|+.|++... +... . ....++.+.|---....+++.++|||||||.++|||||+.+|++|
T Consensus 81 ~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 9999975 599999999998642 2111 1 114556666653333444578999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||||.||-|.-.+.+.+.|+++ +.||++|.++..++.+++|+.++|++|+++ +.|+.+++..
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999999999888765 349999999999999999999999999997 6788877653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=357.64 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=171.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|+++|++++| +++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +..+
T Consensus 3 ~~i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEe-CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 589999999999 567899999999999999999999999999999999999999999998653 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc------C-CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF------N-LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~------~-~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++ .+++..|+.+++.... + .+. ..+.++++.+|+....+ +++.+|||||||||+|||||+.
T Consensus 82 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhc
Confidence 9999986 3777889999875311 1 111 34567899999987654 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVADL 228 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcC
Confidence 99999999999999999999998888764 5799999999999999999999999999864 4554443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=323.70 Aligned_cols=201 Identities=22% Similarity=0.323 Sum_probs=168.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 397 (568)
..|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 3 ~~l~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHF-GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEe-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 358999999999 56789999999999999999999999999999999999986 4 689987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHhc---C-CCH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---N-LPY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~-~~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++..|+.+++...+ + ... +.+..+++.+++... ....++.+|||||||||+|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 82 SIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 235999999874 777789988775321 2 111 345677888998531 2234689999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|.+|++.. .|+.+++
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 234 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE-CGETKKI 234 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999876 5699999999999999999999999999975 4665554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=323.65 Aligned_cols=201 Identities=25% Similarity=0.313 Sum_probs=166.5
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CC---CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TP---NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p---~~G~i~~~~---------- 397 (568)
.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+. +| ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 3 EPILQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred CceEEEEeeEEEE-CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 3589999999999 5678999999999999999999999999999999999985 46 489987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+.. ...+..+++.+++... ....++.+|||||||||+
T Consensus 82 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 82 VDLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred HhhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 235999999874 565 6888876522 1221 1234567888887431 223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.++.
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQM 234 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999876 4699999999999999999999999999975 4665554
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=327.87 Aligned_cols=201 Identities=22% Similarity=0.338 Sum_probs=166.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
..++|+++|+++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 21 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWY-GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 45689999999999 56789999999999999999999999999999999999997 6999997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHHhCCC----CCccccCCCCCCCHhHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLGMFGL----PSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-~----~~~~~~L~~~~l----~~~~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. ++. .|+.+++... .+.. . ..+.+.+..+++ .... ..++..||||||||
T Consensus 100 ~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qr 175 (271)
T PRK14238 100 VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQR 175 (271)
T ss_pred HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHH
Confidence 235999999874 555 4888876531 1222 1 223455666653 2223 34789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||+|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++|+|++|++.. .|+.+++
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~ 253 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE-YDDTDKI 253 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999999876 4799999999999999999999999999975 4666554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=323.60 Aligned_cols=199 Identities=24% Similarity=0.300 Sum_probs=166.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC-----------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP-----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~-----------~~~ 400 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++. +..
T Consensus 2 ~~~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFY-GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEE-CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 57899999999 56789999999999999999999999999999999999974 6899998643 236
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA~al 468 (568)
++|++|++. +++ .|+.+++... .+. . ...+..+++.+++... ....++.+|||||+|||+|||||
T Consensus 81 i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999874 565 5888876422 111 1 1235678999999532 22346789999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 228 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE-FGESKEF 228 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999865 6799999999999999999999999999975 4565554
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=300.47 Aligned_cols=197 Identities=28% Similarity=0.390 Sum_probs=168.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
++.+++|.+.| +..+ =..+++|..||++||+||+||||||||++|+|...|.+|+|..+. .+.++++|
T Consensus 1 ~l~L~~V~~~y-~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSY-GHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEee-Ccce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 35688999999 4332 357889999999999999999999999999999999999998763 34689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--C-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--N-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|+.+ +|..+|+.+++.... + ...+.+..++.++||.++..+ .|.+|||||||||+|||+|+++-+||+||
T Consensus 78 QEnN--LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~R-LP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QENN--LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKR-LPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hccc--cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhh-CccccCchHHHHHHHHHHHhccCCeEEec
Confidence 9864 999999998874211 1 234567889999999998876 56899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+.|||.-+..+..++.+. +.|++||||..+.+..++++++++++|+|. +.|+.+++
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~ 217 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQEL 217 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHH
Confidence 999999999888887777544 679999999999999999999999999996 56766665
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=323.29 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=166.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEE-CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 68899999999 5678999999999999999999999999999999999999874 79987542
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CHH----HHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PYE----KSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~~----~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++..|+.+++... .+. ..+ .+...+..+++.. .....++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 236999999864 67778998887532 121 222 2334566666532 122357899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|+.+|+||||||||++||+.++..+.+.|+++ +.|||++|||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQLF 235 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 3799999999999999999999999999974 56666653
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=324.04 Aligned_cols=215 Identities=25% Similarity=0.335 Sum_probs=180.9
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-C----CccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-P----NKGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p----~~G~i~~~~--------- 397 (568)
+|+++|++..|... ..+++||||+|.+||++||||.+||||||+.+.|+|+++ | .+|+|.++.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999532 369999999999999999999999999999999999998 3 467876543
Q ss_pred ------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCC-C----HHHHHHHHHhCCCCCc--cccCCCCCCCHhHHH
Q psy16366 398 ------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNL-P----YEKSRRQLGMFGLPSY--AHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 ------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~-~----~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkq 460 (568)
...|+|+||+|...|.|-+++-+.+... .+. . .+.+.++|+.+||+.. ....++++|||||+|
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 2479999999998899988886654321 222 2 2357788999999864 445578999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE-----
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF----- 531 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~----- 531 (568)
||+||.||+.+|+|||.||||++||...+..++++|++ ++.++|+||||+..+.++||+|.||..|++++.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~ 240 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEE 240 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHH
Confidence 99999999999999999999999999999999888865 467999999999999999999999999999875
Q ss_pred --cCCHHHHHHHHHHHHhhh
Q psy16366 532 --NGDFDDYREKLLTSLGEA 549 (568)
Q Consensus 532 --~g~~~~~~~~~~~~~~~~ 549 (568)
..+.+.|.+.++.++...
T Consensus 241 i~~~P~HPYT~~Ll~s~P~~ 260 (316)
T COG0444 241 IFKNPKHPYTRGLLNSLPRL 260 (316)
T ss_pred HhcCCCChHHHHHHHhCccc
Confidence 234567888888888664
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=323.37 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 2 ~~l~~~~l~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYY-GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEe-CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 478999999999 567899999999999999999999999999999999999884 899987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .++.+++... .+. .. +.+..+++.+++... ....++.+|||||+||++|
T Consensus 81 ~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 246999999874 555 7888877532 122 11 234567888888532 2334789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999999999974 46666554
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=326.26 Aligned_cols=190 Identities=25% Similarity=0.292 Sum_probs=160.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
++++|+++||++.| +++.+|+|+||+|.+|++++|+|||||||||||++|+|+++ |++|+|.++.
T Consensus 10 ~~~~l~i~nl~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEE-CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 34689999999999 56789999999999999999999999999999999999987 6899997643
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+.. .+.+.++++.+++.. .....++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 135999999873 565 4888877532 1221 234566788887642 12234779999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||||+.+|++|||||||+|||+.+...+.++|.++ +.|||+||||++++..+||++++|++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999999999999999999876 36899999999999999999999997
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=339.04 Aligned_cols=194 Identities=25% Similarity=0.307 Sum_probs=167.3
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------------ee
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------------LR 400 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------------~~ 400 (568)
++.+.| +...+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++.. ..
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 455667 6778999999999999999999999999999999999999999999987531 36
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++. +++..|+.+++... .+.+. ..+.++++.+||..+.+. ++.+|||||||||+|||||+.+|+
T Consensus 108 i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~-~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 108 VSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADK-KPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999974 78889999987532 23332 346678999999876654 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||||++||+.++..+.+.|.++ +.|||+||||++++.++|+++++|++|+++. .|+.+++
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~-~g~~~ei 252 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ-HGTPEEI 252 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999888654 6799999999999999999999999999975 4666655
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=323.47 Aligned_cols=200 Identities=24% Similarity=0.334 Sum_probs=166.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~----------- 397 (568)
++|+++|++++| +.+++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEE-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 478999999999 56789999999999999999999999999999999999997 4799987542
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++. .|+.+++... .+.. ...+..+++.+++.. .....++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 235899999863 554 6888876432 1221 134556788888842 12234779999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|++... ++.+++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTEEM 233 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999876 57999999999999999999999999999754 555554
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=329.09 Aligned_cols=203 Identities=23% Similarity=0.289 Sum_probs=168.4
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 397 (568)
+.++|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.++.
T Consensus 36 ~~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYY-GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 56789999999999 56789999999999999999999999999999999999864 4999987642
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... .+.. .+.+..++..+++.. .....++..|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPN--PFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCC--CCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 236999999974 5554 898887532 1221 123456788888742 122346899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|++|||||||+|||+.++..+.++|+++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~~ 269 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQLF 269 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 3589999999999999999999999999974 56766653
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=322.27 Aligned_cols=199 Identities=26% Similarity=0.440 Sum_probs=165.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECC----------C--
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSP----------R-- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~----------~-- 398 (568)
+++|+++||++.| +++.+|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.+.. +
T Consensus 5 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEe-CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4589999999999 467899999999999999999999999999999999998 579999997642 1
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcC----------CC----HHHHHHHHHhCCCCC-ccccCCCC-CCCHhHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFN----------LP----YEKSRRQLGMFGLPS-YAHTIPIR-DLSGGQKARV 462 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----------~~----~~~~~~~L~~~~l~~-~~~~~~~~-~LSgGqkqRv 462 (568)
..++|++|++. +++..+..+++..... .. .+.+.++|..+++.. ... .++. .|||||+|||
T Consensus 84 ~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~LSgG~~qrv 160 (252)
T CHL00131 84 LGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLS-RNVNEGFSGGEKKRN 160 (252)
T ss_pred eeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhc-cccccCCCHHHHHHH
Confidence 13778899863 6777787776542210 11 133567899999974 344 3565 5999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~ 536 (568)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+ |+++++|++|+++. .|+.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 9999999999999999999999999999999999765 57999999999999887 89999999999974 56655
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=324.26 Aligned_cols=201 Identities=24% Similarity=0.289 Sum_probs=167.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.++|+++||+++| +++++|+|+||+|.+|++++|+|||||||||||++|+|+++ |++|+|..+.
T Consensus 18 ~~~l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYY-GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEE-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 4689999999999 56789999999999999999999999999999999999986 5899987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++.... +. .. ..+.+++..+++.. .....++.+|||||+|||+
T Consensus 97 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 335999999863 555 58888875321 21 11 23556788888852 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||.+++..+||++++|++|+++. .|+.+++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 249 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE-YDKTRNI 249 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999999876 4689999999999999999999999999975 4666554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=321.56 Aligned_cols=200 Identities=27% Similarity=0.336 Sum_probs=165.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
.|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFY-GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEE-CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 47899999999 567899999999999999999999999999999999999763 689997642
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++ .|+.+++... .+. . .+.+.+++..+++.. .....++.+|||||+|||+||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 235899999863 565 7888876431 222 1 234556778888742 122347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++.+..+|+++++|++|+++. .++.+++.
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 233 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE-FGDTVDLF 233 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999999999975 46666553
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=355.28 Aligned_cols=200 Identities=23% Similarity=0.322 Sum_probs=172.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC------------Ce
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP------------RL 399 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~------------~~ 399 (568)
++|+++|++++| +++++|+||||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.++. +.
T Consensus 4 ~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEe-CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 589999999999 567899999999999999999999999999999999999996 899998643 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
.++|++|++. +++..|+.+++.... + .. .+.+.++++.+++....+ +++.+|||||||||+|||||+
T Consensus 83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-TPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence 5999999863 777889999875321 1 12 134677899999976554 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .++.+++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 230 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAGM 230 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-ecccccC
Confidence 999999999999999999999999998765 5799999999999999999999999999864 4555443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=316.17 Aligned_cols=181 Identities=29% Similarity=0.438 Sum_probs=155.0
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEE
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIG 402 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~ 402 (568)
++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.. +..++
T Consensus 1 i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEE-CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 46899999 567899999999999999999999999999999999999999999987643 13599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++..|+.+++... .+.. .+.+.++++.+|+....+ +++.+|||||+||++|||||+.+|++|
T Consensus 80 ~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999864 67778998876431 1222 234677899999976655 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||||||++||+.++..+.+.|+++ +.|||+||||++++ .+|+++++|
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 999999999999999999999875 57999999999987 479999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=320.07 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=170.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|..+. +..++|++|
T Consensus 1 i~i~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRF-GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEE-CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4689999999 567899999999999999999999999999999999999999999987642 246899999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++. +++..|+.+++.... +.. .+.+.++++.+++....+ .++..||+||+||++|||+|+.+|+++||||
T Consensus 80 ~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 873 777788888775321 222 234567899999976554 4679999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.+...+.++|.+. +.|||++||+++++..+|+++++|++|+++. .++.+++.
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999764 5799999999999999999999999999975 46666654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=319.65 Aligned_cols=198 Identities=24% Similarity=0.363 Sum_probs=169.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
|+++|+++.|+ +. +|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999994 43 89999999999999999999999999999999999999999998653 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++ .+++..++.+++.... +.. .+.+.++++.++|...... ++.+|||||+|||+||||++.+|++|||||
T Consensus 79 ~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-KPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cC--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-CcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 86 4677789988775321 222 2345678999999876654 689999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+|||+.+.+.+.++|+++ +.|||++|||++++..+|+++++|++|+++. .++.++..
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 218 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVF 218 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999988764 5799999999999999999999999999974 56666554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=308.61 Aligned_cols=201 Identities=23% Similarity=0.394 Sum_probs=175.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
++|.++|+.++| +.++++++|||+|++||++|++|||||||||.+.+++|+.+|++|.|..+. +..|
T Consensus 3 ~~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 468899999999 788999999999999999999999999999999999999999999997642 4569
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----CC--HH--HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----LP--YE--KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----~~--~~--~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
||++|++. +|-.+|+.++++.... .. .+ ++.++|+.|++.+..+. +..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~-~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-KAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcC-cccccccchHHHHHHHHHHhcCC
Confidence 99999985 8999999998764321 11 12 35588999999987664 78999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHH---HhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAI---KNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l---~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+++||||||+|.||-++..+.+++ ++.+.+|+++-|+.+....+|||.|+|.+|++. +.|+++++.
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~ 227 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIV 227 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHh
Confidence 999999999999998876665555 555789999999999999999999999999996 688888764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=326.27 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=168.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC--------ccEEEECC---------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--------KGELRKSP--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~--------~G~i~~~~--------- 397 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 1 ml~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVAR-RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEE-CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 47899999999 5678999999999999999999999999999999999999998 89998643
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHhc-------C-C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~~-------~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++...|+.+++.... + . ..+.+..+|+.+++....+ +++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQ--PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCC--CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHH
Confidence 124799999863 334578888874321 0 0 1134667899999987655 4789999999999999
Q ss_pred HHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 465 AELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 465 A~al~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
||+|+ .+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~- 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA- 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-
Confidence 99999 599999999999999999999999988754 5799999999999999999999999999874
Q ss_pred cCCHHHHH
Q psy16366 532 NGDFDDYR 539 (568)
Q Consensus 532 ~g~~~~~~ 539 (568)
.++.++..
T Consensus 236 ~g~~~~~~ 243 (272)
T PRK13547 236 HGAPADVL 243 (272)
T ss_pred ecCHHHHc
Confidence 56766653
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=324.32 Aligned_cols=203 Identities=26% Similarity=0.406 Sum_probs=169.9
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++|.++||+++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 18 ~~~~l~i~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEE-CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 35789999999999 577899999999999999999999999999999999999986 699987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CCHH----HHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPYE----KSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~~~----~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .. .... .+.+++..+++... ....++.+|||||+|||+
T Consensus 97 ~~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 97 LEFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HHHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 246899999874 566 6888876532 11 1222 23466888888642 123467899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|+||||||||++||+.++..|.+.|.++ ..|||+||||++++..+|+++++|.+|+++. .|+.+++.
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999999876 4799999999999999999999999999975 46666654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=322.54 Aligned_cols=199 Identities=26% Similarity=0.342 Sum_probs=163.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--C---CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--P---NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~---------- 397 (568)
+++++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ | ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFY-GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEE-CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4689999999999 56789999999999999999999999999999999999875 4 589987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. +.+...++.+++.. .....++.+|||||||||+
T Consensus 82 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 236999999864 555 5888876432 121 11 23455677777632 1223478999999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||+|+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|+++.. ++..
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 232 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF-ADTK 232 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 999999999999999999999999999999999876 47999999999999999999999999999865 4433
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=327.08 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=169.3
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||++.|++. .++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 378999999999532 3599999999999999999999999999999999999999999997643 345
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++|++.. ++...|+.+++... .+... +.+..+++.+|+..... .++..|||||+|||+|||||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~ 160 (277)
T PRK13642 83 IGMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRVAVAGIIALRPE 160 (277)
T ss_pred eEEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999998632 34456888877431 12232 23567889999986655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||||++||+.+...+.++|.++ +.|||+||||++++. .|+++++|++|+++. .|+.+++.
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~ 228 (277)
T PRK13642 161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELF 228 (277)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999988654 679999999999997 599999999999874 56776654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=317.57 Aligned_cols=188 Identities=27% Similarity=0.401 Sum_probs=160.1
Q ss_pred eEEEEeeEEEeCC------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC--C---------
Q psy16366 335 VLGLHDVTFGYPG------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--P--------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--~--------- 397 (568)
+|+++|+++.|++ ..++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++ .
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999942 1479999999999999999999999999999999999999999999874 1
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++..|+.+++... .+.. .+.+.++++.+++.......++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 135899999873 67788888876431 2222 235667899999976443457899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEE
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
+|||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999765 5799999999999999999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=319.75 Aligned_cols=199 Identities=27% Similarity=0.429 Sum_probs=161.1
Q ss_pred EEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999953 35799999999999999999999999999999999999999999998754 245999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHH---------HHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQ---------LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~---------L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++.... ......+... +..+ ++..... .++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENV--LFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCch--hcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhh-cCCCcCCHHHHHHHHHHHHHhhC
Confidence 999863 554 58888775321 2222233222 3333 3443333 36799999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .|+++++|.+|+++. .++.+++.+
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999999999876 469999999999996 599999999999974 567666543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=324.56 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=167.0
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
.+++|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 17 ~~~~l~~~nl~~~~-~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEe-CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 35689999999999 567899999999999999999999999999999999999863 589987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. ++. .++.+++.... +.. .+.+...+..+++.. .....++..|||||+|||+|
T Consensus 96 ~~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 SVKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hHHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 246999999874 555 48888764321 111 233456677777632 12234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE---------CCeEEEEcC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNG 533 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~---------~g~i~~~~g 533 (568)
||||+.+|++|||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|+ +|+++. .|
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g 251 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FS 251 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eC
Confidence 99999999999999999999999999999999876 4699999999999999999999998 799874 57
Q ss_pred CHHHHH
Q psy16366 534 DFDDYR 539 (568)
Q Consensus 534 ~~~~~~ 539 (568)
+.+++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 766653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=362.50 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=173.4
Q ss_pred CCCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 332 PPPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
.+++|+++|+++.|+. ..++|+||||+|.+|+++||+||||||||||+++|+|+++|++|.|.+..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 3568999999999942 24799999999999999999999999999999999999999999987532
Q ss_pred --------------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCC--ccccCCCCC
Q psy16366 398 --------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPS--YAHTIPIRD 453 (568)
Q Consensus 398 --------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~--~~~~~~~~~ 453 (568)
+..|||++|++...+++.+|+.+++... .+.+. +.+.++|+.+||.. ....+++.+
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 1359999999754577888999877532 13332 34667899999963 123457899
Q ss_pred CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|||||||||+||+||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 9999999999999999999999999999999999999888888654 679999999999999999999999999997
Q ss_pred EEcCCHHHH
Q psy16366 530 KFNGDFDDY 538 (568)
Q Consensus 530 ~~~g~~~~~ 538 (568)
. .|+.+++
T Consensus 249 ~-~g~~~~~ 256 (623)
T PRK10261 249 E-TGSVEQI 256 (623)
T ss_pred c-cCCHHHh
Confidence 4 5766655
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=319.90 Aligned_cols=200 Identities=24% Similarity=0.363 Sum_probs=160.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECCC------------ee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPR------------LR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~ 400 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++.. ..
T Consensus 1 ~i~~~nl~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSV-EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEe-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 47899999999 4678999999999999999999999999999999999995 699999976531 35
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh------c-C---CC----HHHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL------F-N---LP----YEKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~------~-~---~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~lA 465 (568)
++|++|++. +++..+..+++... . . .. ...+.+.++.++++.....+++. .|||||||||+||
T Consensus 80 i~~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCch--hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 899999864 44444443332110 0 0 11 12345678889996433334554 7999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+ |+++++|++|+++ ..|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHHHH
Confidence 9999999999999999999999999999987654 57999999999999987 8999999999996 45777643
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=336.94 Aligned_cols=193 Identities=24% Similarity=0.332 Sum_probs=164.8
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKF 404 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~ 404 (568)
|++++| +++. + ++||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..++|+
T Consensus 4 ~l~~~~-~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRL-GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEE-CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 799999 5555 4 99999999999999999999999999999999999999987532 2459999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc-CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF-NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~-~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
+|++ .+|+.+|+.+++.... ... ...+.++++.++|....+ +++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEA--RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCC--ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 9987 4788889999875321 111 234678899999987665 4789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 158 Pts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVW 220 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHh
Confidence 99999999999999988764 5799999999999999999999999999974 56666543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=319.95 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=165.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 397 (568)
++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.++.
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEE-CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 578999999999 5678999999999999999999999999999999999999997 59986532
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++. |+.+++... .+.. .+.+...+..+++... ....++.+|||||+|||+|
T Consensus 82 ~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPN--PFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCc--cCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 346999999974 5554 888876432 1221 1234456777776421 2234789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|++.. .++.++.
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE-YGRTGEI 233 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE-eCCHHHH
Confidence 99999999999999999999999999999999876 4799999999999999999999999999975 4666554
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=352.87 Aligned_cols=193 Identities=25% Similarity=0.349 Sum_probs=168.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
|+|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 3 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTF-PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEE-CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 689999999999 567899999999999999999999999999999999999999999998643 2359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-----C-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-----N-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. +++..|+.+++.... + .. .+.+.++++.+++....+ +++.+|||||||||+|||+|+.+
T Consensus 82 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhC
Confidence 99999863 777889988875321 1 12 234667899999986554 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998765 5799999999999999999999999999864
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=320.40 Aligned_cols=185 Identities=29% Similarity=0.462 Sum_probs=156.5
Q ss_pred EEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEecCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFDQHSGEHL 412 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~q~~~~~l 412 (568)
..| +.+++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.. +..++|++|+. ..+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-ccc
Confidence 445 556899999999999999999999999999999999999999999998643 23689987543 246
Q ss_pred CCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 413 FPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 413 ~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
++..|+.+++.. ..+... ..+..+++.+++....+ .++..||||||||++||++|+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 677888887632 223322 23456788999986555 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+.+...+.++|.++ +.|||+||||++++..+|+++++|.+|++..
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999876 4699999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=304.68 Aligned_cols=160 Identities=33% Similarity=0.521 Sum_probs=144.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
++++|+++.| ++.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRY-GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4689999999 456899999999999999999999999999999999999999999997643 24689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
|++. +++..++.+++. |||||+|||+|||||+.+|++|||||||++||
T Consensus 80 q~~~--~~~~~tv~~~~~------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD 127 (173)
T cd03230 80 EEPS--LYENLTVRENLK------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127 (173)
T ss_pred cCCc--cccCCcHHHHhh------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 9864 667778777652 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 486 IESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 486 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+.++..+.++|.++ +.|||++|||.+++..+|+++++|++|++
T Consensus 128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 128 PESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999876 46899999999999999999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=311.78 Aligned_cols=184 Identities=29% Similarity=0.420 Sum_probs=160.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|+++||++.| +++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.. +..++|++
T Consensus 1 l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCER-DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEe-CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4689999999 567899999999999999999999999999999999999999999997643 23689999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
|++. +++..|+.+++..... ...+.+.++++.+++.+..+ .++.+||||||||++|||||+.+|++|||||||+||
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9863 6667899888754321 23456778899999987654 478999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE
Q psy16366 485 DIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 485 D~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|+.++..+.+.|.++ +.|+|+||||...+..+|++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999765 679999999999999999999776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=322.62 Aligned_cols=203 Identities=26% Similarity=0.317 Sum_probs=168.9
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC---------
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP--------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~--------- 397 (568)
..++++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 22 ~~~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 22 EQTALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CCcEEEEEEEEEEE-CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 35689999999999 567899999999999999999999999999999999999874 899987532
Q ss_pred ----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-C----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHH
Q psy16366 398 ----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-P----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 ----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv 462 (568)
+..++|++|++. +++. |+.+++... .+. . ...+.++++.+++.. .....++.+|||||+|||
T Consensus 101 ~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 177 (272)
T PRK14236 101 VAELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRL 177 (272)
T ss_pred HHHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHH
Confidence 346899999864 5665 888877532 222 1 123566788888853 122346789999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||.+++..+|+++++|++|+++. .|+.+++.
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 255 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTLF 255 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHHh
Confidence 9999999999999999999999999999999999876 4799999999999999999999999999874 56666653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=317.17 Aligned_cols=198 Identities=30% Similarity=0.420 Sum_probs=161.8
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999432 2799999999999999999999999999999999999999999998653 235999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHH---------HHHHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSR---------RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++.... ......+. +++..+ ++..... .++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVF--LFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCe--ecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeec-cCCCcCCHHHHHHHHHHHHHhcC
Confidence 999874 554 58888775321 12222222 334444 4554443 36789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++.. |+++++|++|++. ..++.+++.
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999999999999999999876 5699999999999976 9999999999997 457776654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=319.92 Aligned_cols=199 Identities=24% Similarity=0.320 Sum_probs=165.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 397 (568)
+++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEE-CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 68899999999 567899999999999999999999999999999999999986 589987642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-H----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-Y----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
+..++|++|++. +++ .|+.+++... .+.. . +.+...++.+++.. .....++.+|||||+|||+|||
T Consensus 82 ~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 158 (249)
T PRK14253 82 RIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIAR 158 (249)
T ss_pred HhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHH
Confidence 235899999874 565 6888877532 1221 1 23445677788743 1223478899999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+|+++++|.+|++.. .|+.+++
T Consensus 159 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 159 TIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999999999999876 4699999999999999999999999999974 4666655
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=322.72 Aligned_cols=201 Identities=22% Similarity=0.269 Sum_probs=165.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 397 (568)
.|+|+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++.
T Consensus 8 ~~~l~i~~v~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYY-GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEE-CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4689999999999 56789999999999999999999999999999999999986 4789987643
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++ .|+.+++.... +.. .+.+..++..+++.. .....++.+|||||+|||+||
T Consensus 87 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 87 VEVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred HHHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 235999999873 555 48888764321 111 233455677777742 122347889999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE---------CCeEEEEcCC
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE---------KKNIRKFNGD 534 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~---------~g~i~~~~g~ 534 (568)
|||+.+|+||||||||++||+.++..+.++|.++ +.|||+||||++++..+||++|+|+ +|+++. .|+
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~ 242 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDR 242 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCC
Confidence 9999999999999999999999999999999876 3699999999999999999999998 788874 466
Q ss_pred HHHH
Q psy16366 535 FDDY 538 (568)
Q Consensus 535 ~~~~ 538 (568)
.+++
T Consensus 243 ~~~~ 246 (264)
T PRK14243 243 TEKI 246 (264)
T ss_pred HHHH
Confidence 6665
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=320.57 Aligned_cols=203 Identities=22% Similarity=0.345 Sum_probs=170.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
.|++.++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|...+
T Consensus 8 ~~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 4789999999999 678899999999999999999999999999999999999999997654321
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++..|+.+++... .+. .. ..+..+++.+++.. .....++..||||||||++|
T Consensus 87 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 346899999874 67778888877532 122 22 23456788899853 12234678999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|++..+ |+.+++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~-g~~~~~~ 240 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEW-GSSNEIF 240 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCHHHHH
Confidence 99999999999999999999999999999999876 47999999999999999999999999999754 5666554
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=315.37 Aligned_cols=190 Identities=30% Similarity=0.455 Sum_probs=161.8
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+++++|+++.|+++ +.+|+|+||++.+|++++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 37899999999432 6799999999999999999999999999999999999999999997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---c-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---F-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+..++|++|++. +++..|+.+++... . .... ..+.++++.+|+...... ++.+||+|||||++|||+|+
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-YPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-ChhhCCHHHHHHHHHHHHHh
Confidence 246999999874 67778988876422 1 1222 346778999999765554 67999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||+++. .+|+++++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999988888654 57999999999965 79999999999975
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=353.56 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=171.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC----------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP---------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~---------------- 397 (568)
|+++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|++ +|++|+|.+..
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEE-CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4689999999 5678999999999999999999999999999999999997 79999987630
Q ss_pred ----------------------------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCC
Q psy16366 398 ----------------------------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGL 442 (568)
Q Consensus 398 ----------------------------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l 442 (568)
+..++|++|++. .+++..++.+++... .+.+. +.+.++|+.+||
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 235899999742 466778888876432 23322 346678999999
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCc
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDC 518 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~ 518 (568)
....+ +++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+
T Consensus 159 ~~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 237 (520)
T TIGR03269 159 SHRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237 (520)
T ss_pred hhhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence 86654 478999999999999999999999999999999999999999998887654 5799999999999999999
Q ss_pred eEEEEECCeEEEEcCCHHHHHHH
Q psy16366 519 ELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 519 ~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++++|++|+++. .|+++++...
T Consensus 238 ~i~~l~~G~i~~-~g~~~~~~~~ 259 (520)
T TIGR03269 238 KAIWLENGEIKE-EGTPDEVVAV 259 (520)
T ss_pred EEEEEeCCEEee-ecCHHHHHHH
Confidence 999999999874 6888777554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=315.28 Aligned_cols=191 Identities=25% Similarity=0.338 Sum_probs=160.7
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 6899999999543 4799999999999999999999999999999999999999999997643 346999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|++. +++ .|+.+++........+++.+.+..+++..... ..++..|||||+|||+|||+|+.+|+
T Consensus 83 ~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 83 IPQDPV--LFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred ECCCCc--ccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999874 554 58888764322234455566666666654322 23678999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+.++..+.++|.++ +.|||++|||.+++.. |+++++|++|++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~ 217 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVE 217 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEe
Confidence 99999999999999999999999875 4689999999999976 89999999999864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=351.59 Aligned_cols=194 Identities=24% Similarity=0.353 Sum_probs=167.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECC------------Cee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSP------------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~------------~~~ 400 (568)
+|+++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++. +..
T Consensus 1 ~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEe-CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 47899999999 567899999999999999999999999999999999999987 799998753 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----C--CCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----N--LPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----~--~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++..|+.+++.... . ... +.+.++++.+++......+++.+|||||||||+|||||+
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 999999873 677889988765321 1 111 345678999999865444578999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++..
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeee
Confidence 999999999999999999999999988764 57999999999999999999999999998743
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=306.35 Aligned_cols=165 Identities=25% Similarity=0.346 Sum_probs=146.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
+++++++|++++| +|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3589999999998 89999999999999999999999999999999999999999997643 236
Q ss_pred EEEEecCCC-CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 401 IGKFDQHSG-EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 401 i~~~~q~~~-~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++|++|++. ..+++..|+.+++..... |||||||||+|||||+.+|++|||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~--------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL--------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh--------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 999999863 246677788887642110 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 480 PTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
||++||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999865 57999999999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=319.89 Aligned_cols=198 Identities=24% Similarity=0.361 Sum_probs=164.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC-------------
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP------------- 397 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------- 397 (568)
-+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+.+ |++|+|.+..
T Consensus 6 ~~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEE-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 4689999999 56789999999999999999999999999999999999986 4799997642
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--C----HHHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--P----YEKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--~----~~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++. ++.+++... .+. . ...+..+++.+++... ....++..|||||||||+||
T Consensus 85 ~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 235899999863 5654 787776421 121 1 1235567899998642 12346789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||.+++..+|+++++|++|+++. .++.+++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 235 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEI 235 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999999999999999765 4799999999999999999999999999974 4665554
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=308.09 Aligned_cols=174 Identities=32% Similarity=0.545 Sum_probs=143.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCC
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~ 416 (568)
+++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++... +. ..
T Consensus 1 ~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~-~~------------~~ 66 (180)
T cd03214 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKD-LA------------SL 66 (180)
T ss_pred CeeEEEEEE-CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEE-CC------------cC
Confidence 368999999 45789999999999999999999999999999999999999999999875421 10 00
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 417 ~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
..... ....+ .+.++++.+|+....+ .++..|||||+||++|||+|+.+|++|||||||++||+.+...+.+.|
T Consensus 67 ~~~~~-~~~i~----~~~q~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 140 (180)
T cd03214 67 SPKEL-ARKIA----YVPQALELLGLAHLAD-RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL 140 (180)
T ss_pred CHHHH-HHHHh----HHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 11111 00000 0112788889986554 478999999999999999999999999999999999999999999998
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 141 ~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 141 RRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 765 5699999999999999999999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=292.19 Aligned_cols=191 Identities=30% Similarity=0.376 Sum_probs=165.8
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------------
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--------------- 396 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------------- 396 (568)
+|+++++++..+. .-.||++|+|.|++||.++||||+||||||||-+++|+..|++|+|+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 7888999888732 2369999999999999999999999999999999999999999999853
Q ss_pred CCeeEEEEecCCCCCCCCCCCHHHHHHHh---cC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 397 ~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
...++|++||.+ ++.+.+|..|++... .+ .....++++|+.+||...... +|.+|||||+|||+||||++
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~H-yP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH-YPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccccc-CccccCchHHHHHHHHHHhc
Confidence 235799999986 588999999987532 22 123557889999999987765 67999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
..|+||+.||||-+||..+-+.+.++|- +.+.|+|+||||..++.+ |+|++.|.+|+++
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceec
Confidence 9999999999999999999888888874 457799999999999976 7899999999985
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=311.29 Aligned_cols=185 Identities=32% Similarity=0.417 Sum_probs=159.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEec
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQ 406 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q 406 (568)
+++++|+++.| +++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVR-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEE-CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 58899999999 5678999999999999999999999999999999999999999999987542 35789987
Q ss_pred CCCCCCCCCCCHHHHHHH---hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMK---LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++. +++..|+.+++.. ..+.....+.++++.+|+.... ..++.+||||||||++||||++.+|++|||||||+|
T Consensus 81 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 653 5667888887643 2233345678899999998654 457899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
||+.++..+.+.|.++ +.|||+||||.+++.. ++++.++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999865 6799999999999986 78877753
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=316.37 Aligned_cols=199 Identities=29% Similarity=0.383 Sum_probs=161.0
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++++|+++.|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999995456799999999999999999999999999999999999999999998754 2358999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+|++. +++ .|+.+++.... ......+...+..+++ ..... .++..|||||||||+|||||+.+|
T Consensus 81 ~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 81 PQDTV--LFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred CCCCh--hhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99973 554 58888775321 2223333333333333 22222 356899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|||||||+|||+.++..+.+.|.++ +.|||+|||+.+++.. |+++++|++|++. ..++.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~-~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIV-ERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEE-eeCCHHHHhh
Confidence 999999999999999999999999766 5699999999999975 9999999999996 4566666543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=319.10 Aligned_cols=201 Identities=22% Similarity=0.291 Sum_probs=167.0
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-----ccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-----KGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 397 (568)
++|+++|+++.| ++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+..
T Consensus 6 ~~l~~~nl~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYY-DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEe-CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 478999999999 5667999999999999999999999999999999999999985 78776432
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+. +. ..+..+++.+++... ....++.+|||||+|||+|
T Consensus 85 ~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 235899999864 666 7888876432 122 21 235667888887532 2345789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC-----CeEEEEcCCH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK-----KNIRKFNGDF 535 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~-----g~i~~~~g~~ 535 (568)
||+|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.++|+++++|++ |+++ ..|+.
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~ 240 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV-EFGLT 240 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE-EeCCH
Confidence 99999999999999999999999999999988763 67999999999999999999999999 9986 45777
Q ss_pred HHHH
Q psy16366 536 DDYR 539 (568)
Q Consensus 536 ~~~~ 539 (568)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14258 241 KKIF 244 (261)
T ss_pred HHHH
Confidence 6653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=352.57 Aligned_cols=205 Identities=21% Similarity=0.319 Sum_probs=170.1
Q ss_pred CCeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-------
Q psy16366 333 PPVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------- 397 (568)
.|+|+++|+++.|++ .+++|+|+||+|.+||++||+||||||||||+|+|+|+++| ++|+|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 358999999999942 25799999999999999999999999999999999999987 799987532
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCc--cccCCCCCCCHhHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSY--AHTIPIRDLSGGQK 459 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~--~~~~~~~~LSgGqk 459 (568)
+..+||++|++...+++..++.+++... .+.+. +.+.++++.+||... ...+++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 1369999999743466667777655321 12222 346678999999752 12347899999999
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|||+|||||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~-~g~~ 241 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE-QNRA 241 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE-eCCH
Confidence 9999999999999999999999999999999999998763 6799999999999999999999999999874 4655
Q ss_pred HHH
Q psy16366 536 DDY 538 (568)
Q Consensus 536 ~~~ 538 (568)
+++
T Consensus 242 ~~~ 244 (529)
T PRK15134 242 ATL 244 (529)
T ss_pred HHH
Confidence 554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=351.83 Aligned_cols=200 Identities=24% Similarity=0.296 Sum_probs=167.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++|+++.| +++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.... +..++|
T Consensus 3 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRL-SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEc-CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 68999999999 566799999999999999999999999999999999999999999997532 124899
Q ss_pred EecCCCCCCCC------CCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 404 FDQHSGEHLFP------DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 404 ~~q~~~~~l~~------~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
++|++...++. ..++.+++... ....+.+.++++.+|+....+ +++.+|||||||||+||+||+.+|++|||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLD-RRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99986432221 34555544211 012345778899999986554 57899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 222 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEI 222 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHH
Confidence 9999999999999999999876 5799999999999999999999999999974 5776664
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=307.54 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=157.0
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+.++++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 468999999999532 4799999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|++|++. +++ .|+.+++..........+.+.++ + . .++..|||||+|||+|||+|+.+|++|||||||
T Consensus 85 ~~v~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~l~---~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 85 TIIPQDPT--LFS-GTIRSNLDPFDEYSDEEIYGALR---V----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred EEEecCCc--ccC-ccHHHHhcccCCCCHHHHHHHhh---c----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 99999973 555 48888874322233344444444 2 2 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 482 NNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
++||+.++..+.+.|.++ +.|+|++|||.+++.. |+++++|++|++..
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 154 ASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKE 203 (207)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEe
Confidence 999999999999999876 4699999999999976 89999999999864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=324.61 Aligned_cols=208 Identities=25% Similarity=0.304 Sum_probs=170.3
Q ss_pred CCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC----
Q psy16366 327 NPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP---- 397 (568)
Q Consensus 327 ~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---- 397 (568)
.++...+++|.++||++.| +++++|+++||+|.+|++++|+|||||||||||++|+|+++ |++|+|.++.
T Consensus 37 ~~~~~~~~~l~i~nl~~~~-~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 37 DYEFDGDAKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ccccCCCceEEEEEEEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3344456789999999999 56789999999999999999999999999999999999986 6899997642
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHHhc---------------CCC-----HHHHHHHHHhCCCCC---c
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---------------NLP-----YEKSRRQLGMFGLPS---Y 445 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---------------~~~-----~~~~~~~L~~~~l~~---~ 445 (568)
+..++|++|++. +++ .++.+++.... +.. .+.+..++..+++.. .
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred cccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 236999999874 565 48888765311 011 233566788888742 1
Q ss_pred cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceE-EE
Q psy16366 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-WA 522 (568)
Q Consensus 446 ~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i-~~ 522 (568)
....++.+|||||+|||+|||||+++|+||||||||+|||+.+...|.++|+++ +.|||+||||++++..+|+++ ++
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 223467999999999999999999999999999999999999999999999876 469999999999999999996 57
Q ss_pred EECCeEEEEcCCHHHHH
Q psy16366 523 LEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 523 l~~g~i~~~~g~~~~~~ 539 (568)
|++|+++. .|+.+++.
T Consensus 273 l~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 273 LTGGELVE-YDDTDKIF 288 (305)
T ss_pred ecCCEEEE-eCCHHHHH
Confidence 89999975 57776654
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=303.55 Aligned_cols=161 Identities=37% Similarity=0.496 Sum_probs=142.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~ 402 (568)
++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 1 i~~~~l~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEE-CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4689999999 567899999999999999999999999999999999999999999997532 23589
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++|++. ++...|+.+++... |||||+||++|||||+.+|++|||||||+
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~~~----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~ 129 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIALG----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTS 129 (178)
T ss_pred EEecCCc--cCCCCCHHHheeec----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 9999864 56667776654311 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|||+.++..+.++|.++ +.|+|+||||.+++..+|+++++|++|+
T Consensus 130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999988764 5799999999999999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=296.84 Aligned_cols=200 Identities=26% Similarity=0.446 Sum_probs=174.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------- 397 (568)
+.|.++|+.++| |...+|++||++-+.|+++.|+|.+|||||||||||.=+..|+.|.|..+.
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 468899999999 788899999999999999999999999999999999999999999987532
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
+.+.|++||+++ ++..+|+.++.... .+.+. +.+..+|.++|+....+ .+|..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FN--LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFN--LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcc--hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHH
Confidence 246799999975 89999999987642 24443 44667899999987766 4678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++|||||+.+|+++|+|||||+|||+-.-.+.+.++++ +.|+++|||.+.|+..++++++++++|.|.+ .|+++..
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE-~G~P~qv 239 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE-EGPPEQV 239 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc-cCChHHH
Confidence 99999999999999999999999999988887777654 7899999999999999999999999999854 6776654
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=316.24 Aligned_cols=199 Identities=31% Similarity=0.409 Sum_probs=160.0
Q ss_pred EEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 336 LGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
++++|+++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999953 24699999999999999999999999999999999999999999998654 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhC-----------CCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMF-----------GLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +++ .|+.+++.... ......+...+..+ ++..... .++.+|||||+|||+|||+|+.
T Consensus 81 ~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhc
Confidence 9999863 554 58888765321 11222333333333 3332333 3578999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.++..+.+.|.++ +.|||++|||++++. .||++++|.+|+++ ..++.+++..
T Consensus 157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~-~~~~~~~~~~ 226 (238)
T cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVV-EQGTHDELMA 226 (238)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEE-EeCCHHHHhh
Confidence 99999999999999999999999999765 468999999999997 89999999999986 4566666543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=316.81 Aligned_cols=202 Identities=22% Similarity=0.263 Sum_probs=166.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++|+++|+++.| +++.+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++.
T Consensus 4 ~~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEE-CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3589999999999 567899999999999999999999999999999999999763 489987542
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~ 463 (568)
+..++|++|++. +++ .|+.+++... .+. .. ..+.++++.+++... ....++..|||||||||+
T Consensus 83 ~~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 83 VALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred hhhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 235899999874 565 4888876421 121 11 234567788877431 123478899999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+|+.+|++|||||||+|||+.++..+.++|.++ +.|||++|||++++..+|+++++|++|+++. .|+.+++.
T Consensus 160 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14261 160 IARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE-FDKTTQIF 236 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE-cCCHHHHH
Confidence 999999999999999999999999999999999876 4799999999999999999999999999974 56666553
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=313.77 Aligned_cols=193 Identities=24% Similarity=0.296 Sum_probs=164.1
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC--------Cee
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP--------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--------~~~ 400 (568)
++.++||++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.. +..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 56799999999764 689999999999999999999999999999999999999 9999998643 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh---cC---CCH----HHHHH-HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL---FN---LPY----EKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~---~~---~~~----~~~~~-~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++ .+++..|+.+++... .. ... ..+.. .+..+++....+ .++..|||||+|||+|||+|+
T Consensus 83 i~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDD--ILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCC--ccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCcCHHHHHHHHHHHHHH
Confidence 99999986 367788998877521 11 111 12334 788888876554 468999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecch-HHHHhhCceEEEEECCeEEE
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDE-RLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~i~~~~~~i~~l~~g~i~~ 530 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|||++||+. ..+..+||++++|++|+++.
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999999999999999999765 56999999998 68999999999999999864
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=318.54 Aligned_cols=201 Identities=26% Similarity=0.360 Sum_probs=166.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
.++|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 14 ~~~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEE-CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 5689999999999 567899999999999999999999999999999999999975 789987632
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC-----HHHHHHHHHhCCCCC---ccccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP-----YEKSRRQLGMFGLPS---YAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~-----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +++. ++.+++... .+.. .+.+..++..+++.. .....++..|||||+||
T Consensus 93 ~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 93 DPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred CHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 235899999864 5654 888876432 1221 234556777777642 12234678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||+|+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|++|+++.. |+.+++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 247 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF-GATDTI 247 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999876 36999999999999999999999999999754 666554
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=321.14 Aligned_cols=197 Identities=26% Similarity=0.375 Sum_probs=167.9
Q ss_pred EEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
|+++|++++|++ ..++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++. +..|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 689999999953 4579999999999999999999999999999999999997 789998754 246999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCC-----------CCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|+ .|+.+++........+++.++++.+||...... .+.. |||||+|||+|||||+.+|
T Consensus 82 v~q~~~--lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~-~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 82 IPQKVF--IFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQ-FPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred ECCCcc--cch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHh-CcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999874 665 488888743223456678888999999866554 4454 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.+...+.+.|.+. +.|||+||||++++.. ||++++|++|+++.+ |+++++.
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~-g~~~~l~ 224 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY-DSIQKLL 224 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec-CCHHHHh
Confidence 999999999999999999999999864 5799999999999975 999999999999865 5665543
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=313.56 Aligned_cols=192 Identities=29% Similarity=0.452 Sum_probs=159.7
Q ss_pred CCCeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C
Q psy16366 332 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R 398 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~ 398 (568)
..++++++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999532 4699999999999999999999999999999999999999999998753 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHH---------HHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..++|++|++. +++ .|+.+++.... ...... +.++++.+ |+..... .++.+|||||+|||+|||
T Consensus 88 ~~i~~~~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 88 SKVSLVGQEPV--LFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred hhEEEEecccH--HHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHH
Confidence 45999999873 554 58888764221 111111 23567777 7766554 368999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|+.+|++|||||||++||+.++..+.+.|.++ +.|||+||||++++.. |+++++|++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~i 226 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDGGRI 226 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEecCCcC
Confidence 999999999999999999999999999999876 3699999999999964 999999999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=308.40 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=151.9
Q ss_pred EEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 336 LGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 336 l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
++++||++.|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++. +|+|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~-- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW-- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--
Confidence 4689999999543 3799999999999999999999999999999999999999999999876 7999999974
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC-----------CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~-----------~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++ ..|+.+++..............+..+++. .... .++..||+|||||++|||+|+.+|++||||||
T Consensus 77 l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 77 IQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 55 46888887543222333333444443332 2222 35689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 481 TNNLDIESIDALAE-AIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 481 t~~LD~~~~~~l~~-~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++||+.+.+.+.+ ++..+ +.|||+|||+.+.+.. |+++++|++|+
T Consensus 155 ~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred cccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 99999999998887 45433 4799999999999988 99999999884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=301.32 Aligned_cols=158 Identities=35% Similarity=0.613 Sum_probs=139.9
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4689999999532 4699999999999999999999999999999999999999999998653 346899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++|++. +++ .|+.+++ |||||+||++|||||+.+|++|||||||++
T Consensus 81 ~~q~~~--~~~-~tv~~~l-------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 81 LPQDDE--LFS-GSIAENI-------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred ECCCCc--ccc-CcHHHHC-------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 999873 555 3766654 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 484 LDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
||+.++..+.+.|.++ +.|||+||||.+++. .|+++++|++|++
T Consensus 127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d~v~~l~~G~i 173 (173)
T cd03246 127 LDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SADRILVLEDGRV 173 (173)
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEEECCCC
Confidence 9999999999999765 469999999999985 7999999999864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=316.73 Aligned_cols=200 Identities=24% Similarity=0.284 Sum_probs=166.1
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC-----------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP----------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 397 (568)
++|+++||++.| +++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEE-CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 378999999999 567899999999999999999999999999999999999985 489987642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cC-CCH----HHHHHHHHhCCCCC---ccccCCCCCCCHhHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FN-LPY----EKSRRQLGMFGLPS---YAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~-~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqRv~l 464 (568)
+..++|++|++. +++ .|+.+++... .+ .+. +.+.+++..+++.. .....++.+|||||+|||+|
T Consensus 85 ~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 135999999874 565 7888876432 11 121 23556788888742 12234678999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE-----CCeEEEEcCCHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE-----KKNIRKFNGDFDD 537 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~-----~g~i~~~~g~~~~ 537 (568)
||||+.+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|+ +|+++. .|+.++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~ 240 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQ 240 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHH
Confidence 99999999999999999999999999999999876 4699999999999999999999998 588874 567666
Q ss_pred H
Q psy16366 538 Y 538 (568)
Q Consensus 538 ~ 538 (568)
+
T Consensus 241 ~ 241 (259)
T PRK14260 241 I 241 (259)
T ss_pred H
Confidence 5
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=301.31 Aligned_cols=163 Identities=33% Similarity=0.503 Sum_probs=144.1
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
++++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999533 3799999999999999999999999999999999999999999998764 2458999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
+|++. +++ .++.+++ +..|||||+||++||||++.+|++|||||||++|
T Consensus 81 ~q~~~--~~~-~tv~~~i----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 81 NQRPY--LFD-TTLRNNL----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred ccCCe--eec-ccHHHhh----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 99863 443 4666554 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 485 DIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 485 D~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+.+.+.+.+.|.++ +.|||++|||.+++. .|+++++|++|+++.
T Consensus 130 D~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 130 DPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 999999999999876 579999999999996 699999999999864
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=296.72 Aligned_cols=158 Identities=28% Similarity=0.423 Sum_probs=131.8
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++|+++.| +++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++... +. .
T Consensus 1 l~~~~l~~~~-~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~-~~------------~ 66 (163)
T cd03216 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKE-VS------------F 66 (163)
T ss_pred CEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE-CC------------c
Confidence 4689999999 56789999999999999999999999999999999999999999998765321 00 0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
....+.. + ..+++ +.+|||||+||++||||++.+|++|||||||++||+.+++.+.++
T Consensus 67 ~~~~~~~-----------~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 67 ASPRDAR-----------R---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred CCHHHHH-----------h---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 0111100 0 00110 112999999999999999999999999999999999999999999
Q ss_pred HHhc---CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 496 IKNY---QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 496 l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|+++ +.|||++|||.+++..+|+++++|++|++.
T Consensus 125 l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 125 IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9876 579999999999999999999999999985
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=314.05 Aligned_cols=190 Identities=31% Similarity=0.383 Sum_probs=159.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
+.+++++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++... +.+..+. ..+++.
T Consensus 23 l~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEV-GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPE 98 (224)
T ss_pred hhhhhhhhhc-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCC
Confidence 7789999999 67889999999999999999999999999999999999999999999886532 2211111 235567
Q ss_pred CCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 416 DTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 416 ~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
.|+.+++... .+... +.+.++++.+++..... .++.+|||||||||+|||+|+.+|++|||||||+|||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 7888876432 22222 23556788899986655 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 489 IDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 489 ~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+..+.++|.++ +.|||+||||.+++..+|+++++|++|+++.
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999988765 5799999999999999999999999999864
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=313.29 Aligned_cols=192 Identities=27% Similarity=0.395 Sum_probs=163.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCCCCCCCCC
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~~~~l~~~ 415 (568)
-++|+||+|+.||++.|+|-+|||||||+|+|.++++|+.|+|.+.. +.+++++||++. |+|.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa--LlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA--LLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc--cccc
Confidence 46899999999999999999999999999999999999999998653 457999999975 8999
Q ss_pred CCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 416 DTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 416 ~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
.|+.++.... .+.+. +.+.++|+.+||.++.+. +|.+|||||||||-|||||+.+|+|||||||||+|||--
T Consensus 121 rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~-yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 121 RTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK-YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc-CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 9999986432 34443 456789999999999876 679999999999999999999999999999999999955
Q ss_pred H----HHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH--------HHHHHHHHHHH
Q psy16366 489 I----DALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF--------DDYREKLLTSL 546 (568)
Q Consensus 489 ~----~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~--------~~~~~~~~~~~ 546 (568)
+ +.|.++-.++++||||||||++.+.++.+||.+|+||+|+.. |++ ++|...+.+.+
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~-Gtp~eIl~~PAndYV~~Fv~~v 268 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV-GTPEEILLNPANDYVRDFVRNV 268 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe-CCHHHHHcCccHHHHHHHHhcC
Confidence 4 455555566789999999999999999999999999999864 443 45655555444
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=312.59 Aligned_cols=188 Identities=26% Similarity=0.323 Sum_probs=156.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC----CccEEEECC---------CeeEEEEecCCCCCCCCCCC
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP----NKGELRKSP---------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~ 417 (568)
+|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.++. +..++|++|++...+++..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899998653 24699999997433556678
Q ss_pred HHHHHHHh---cCCC----HHHHHHHHHhCCCCC--ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHH
Q psy16366 418 PCEYLMKL---FNLP----YEKSRRQLGMFGLPS--YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488 (568)
Q Consensus 418 ~~e~l~~~---~~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~ 488 (568)
+.+++... .+.. .+.+.++++.+++.. .....++.+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 77765321 2221 234677899999973 22234789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 489 IDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 489 ~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
...+.+.|.++ +.|||+||||++++..+|+++++|.+|++.. .|+.+++.
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 214 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE-RGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999888754 5699999999999999999999999999974 56666553
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=306.55 Aligned_cols=178 Identities=29% Similarity=0.410 Sum_probs=153.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~ 404 (568)
+|+++|++++| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|+
T Consensus 1 ml~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEe-CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 47899999999 567899999999999999999999999999999999999999999998753 2368999
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+|++. +++..|+.+++.... ......+.++++.+++....+ +++..|||||+||++||||++.+|++|||||||+
T Consensus 80 ~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred ccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99763 667789988865321 112345778899999976554 5789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRET 516 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~ 516 (568)
+||+.++..+.++|.++ +.|||+||||..++...
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 157 ALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 99999999999999864 57999999999999764
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=289.55 Aligned_cols=144 Identities=48% Similarity=0.830 Sum_probs=137.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|+++.| ++.++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++....++|++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEE-CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 4689999999 456899999999999999999999999999999999999999999999988778899887
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~ 495 (568)
||+||+||++|||+|+.+|+++||||||++||+.++..+.+.
T Consensus 71 --------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 71 --------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred --------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 496 IKNYQGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++++.|||+|||+.+++..+|+++++|++|+
T Consensus 113 l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99988899999999999999999999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=314.13 Aligned_cols=205 Identities=23% Similarity=0.324 Sum_probs=163.2
Q ss_pred EEeCCCceeeeeeeEEEe-----CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLD-----MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~-----~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
|+|++....+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.+... .|+|++|++. ++...|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~--~~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIK--ADYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEeccccc--CCCCCC
Confidence 356554556777777776 79999999999999999999999999999999988765 7999999864 345678
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 418 PCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 418 ~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
+.+++.... ........+++..+++....+ +++.+|||||||||+||+||+.+|++|||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 888764321 112234567889999986555 4789999999999999999999999999999999999999999999
Q ss_pred HHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE-EEcCCHHH---HHHHHHHHHhhhhh
Q psy16366 495 AIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR-KFNGDFDD---YREKLLTSLGEAMV 551 (568)
Q Consensus 495 ~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~-~~~g~~~~---~~~~~~~~~~~~~~ 551 (568)
+|+++ +.|||+||||++++..+||++|+|+++... ...+.+.+ ..+.+++.++..+.
T Consensus 157 ~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (246)
T cd03237 157 VIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLRSGMNRFLKNLDITFR 221 (246)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHHHHHHHHHHHCCCEEe
Confidence 98775 579999999999999999999999765433 23344444 44555665555443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=312.47 Aligned_cols=176 Identities=28% Similarity=0.325 Sum_probs=151.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ...+|++|++. +++..|+.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 57999999999999999999999999999999999999999987532 23589999874 77778998886432
Q ss_pred -----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 426 -----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 426 -----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
.+... ..+.++++.+++..... +++.+|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 12222 23567899999986554 478999999999999999999999999999999999999999999988
Q ss_pred Hhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 497 KNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 497 ~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 764 5799999999999999999999999999974
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=345.44 Aligned_cols=196 Identities=21% Similarity=0.289 Sum_probs=167.4
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeEEEEe
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRIGKFD 405 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i~~~~ 405 (568)
++|++++| +++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++
T Consensus 1 ~~nl~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSF-PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEe-CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 36899999 567899999999999999999999999999999999999999999998653 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHh-c---CC--C----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL-F---NL--P----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~-~---~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++. +++..|+.+++... . +. . .+.+.+++..+++....+ +++.+|||||||||+|||||+.+|+||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9873 67778998876531 1 11 1 124567899999986554 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .++.+++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 221 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA-TQPLAGL 221 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe-ecChhhC
Confidence 999999999999999999988764 5799999999999999999999999999974 4555444
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=308.91 Aligned_cols=187 Identities=22% Similarity=0.304 Sum_probs=152.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRI 401 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i 401 (568)
.+.|+.+.|+++.++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++. +..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999996567899999999999999999999999999999999999999999987632 1458
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. ++ ..++.+++............+.+..+++.... ...++..|||||||||+|||+|+.+
T Consensus 82 ~~~~q~~~--~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 82 AYAAQKPW--LL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred EEEcCCCc--cc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999874 45 56888877543222334445566666654321 1235789999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHH--HH---HhcCceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 472 PDILILDEPTNNLDIESIDALAE--AI---KNYQGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~--~l---~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|++|||||||++||+.++..+.+ ++ ++.+.|||++|||.+++. .|+++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 99999999999999999988776 33 344689999999999986 699999998873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=303.83 Aligned_cols=168 Identities=32% Similarity=0.466 Sum_probs=145.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECC------------CeeE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~------------~~~i 401 (568)
++++|+++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|+ ++|++|+|.++. +..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSV-GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEe-CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4689999999 467899999999999999999999999999999999999 579999998643 1249
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|++|++. +++..++.+++ ......|||||+|||+|||+|+.+|++|||||||
T Consensus 80 ~~v~q~~~--~~~~~~~~~~l-------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 132 (200)
T cd03217 80 FLAFQYPP--EIPGVKNADFL-------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD 132 (200)
T ss_pred EEeecChh--hccCccHHHHH-------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999863 56666655443 1123589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHh-hCceEEEEECCeEEEE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE-TDCELWALEKKNIRKF 531 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~-~~~~i~~l~~g~i~~~ 531 (568)
++||+.+...+.++|.++ +.|||++|||++++.. +|+++++|++|++...
T Consensus 133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 186 (200)
T cd03217 133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKS 186 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999765 5799999999999988 7999999999999754
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=313.60 Aligned_cols=202 Identities=20% Similarity=0.226 Sum_probs=169.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC----------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP---------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 397 (568)
++.+.++++++.| ++.++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.++.
T Consensus 6 ~~~~~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFY-GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEe-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 5679999999999 677899999999999999999999999999999999999987 799987642
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhc---CCC---HHHHHHHHHhCCCCCcc---ccCCCCCCCHhHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLP---YEKSRRQLGMFGLPSYA---HTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~---~~~~~~~L~~~~l~~~~---~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. ++ ..|+.+++.... ... ...+.++++.+++.... ...++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 235899999874 55 478888775321 111 23567789999985421 1246789999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE--------CCeEEEEcCCH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE--------KKNIRKFNGDF 535 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~--------~g~i~~~~g~~ 535 (568)
|||+.+|++|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++. .|+.
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~-~g~~ 240 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE-MGPT 240 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE-eCCH
Confidence 9999999999999999999999999999999876 4699999999999999999999996 789875 4676
Q ss_pred HHHH
Q psy16366 536 DDYR 539 (568)
Q Consensus 536 ~~~~ 539 (568)
+++.
T Consensus 241 ~~~~ 244 (261)
T PRK14263 241 AQIF 244 (261)
T ss_pred HHHH
Confidence 6654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=305.59 Aligned_cols=180 Identities=31% Similarity=0.470 Sum_probs=152.5
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~~ 405 (568)
++++|+++.| +++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSR-GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 4689999999 5678999999999999999999999999999999999999999999976542 4689999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++ .+++..|+.+++... .+.....+.++++.+++..... .++.+|||||||||+||||++.+|++|||||||+
T Consensus 80 q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 875 367778998876432 1222345778899999987655 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEE
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~ 521 (568)
+||+.++..+.++|.++ +.|||+||||...+. |++++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~--~~~~~ 196 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV--EAREL 196 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc--ceEEe
Confidence 99999999999999875 679999999986553 45544
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=311.97 Aligned_cols=190 Identities=22% Similarity=0.323 Sum_probs=159.1
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh-
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL- 425 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~- 425 (568)
..+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. +++++|.+ .+++..|+.+++...
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~--~~~~~~tv~enl~~~~ 110 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISA--GLSGQLTGIENIEFKM 110 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEeccc--CCCCCCcHHHHHHHHH
Confidence 3456999999999999999999999999999999999999999999988753 56677764 356677888876421
Q ss_pred --cCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 426 --FNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 426 --~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
.+..... +..++..+++..... .++.+|||||+|||+||+||+.+|++|||||||+|||+.+...+.+.|.++
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 2333322 345677888876654 478999999999999999999999999999999999999999999988765
Q ss_pred ---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 500 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 500 ---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+.|||+||||.+++..+|+++++|++|++.. .|+.+++....
T Consensus 190 ~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~-~g~~~~~~~~~ 234 (264)
T PRK13546 190 KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD-YGELDDVLPKY 234 (264)
T ss_pred HHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE-eCCHHHHHHHh
Confidence 6799999999999999999999999999974 57777776544
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=301.50 Aligned_cols=172 Identities=33% Similarity=0.380 Sum_probs=149.8
Q ss_pred CeEEEEeeEEEeCC-----CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC--------C
Q psy16366 334 PVLGLHDVTFGYPG-----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP--------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-----~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~--------~ 398 (568)
+.++++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.++. +
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35789999999954 267999999999999999999999999999999999999 99999998643 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
..++|++|++. +++..|+.+++.... .+ ..|||||+|||+|||||+.+|++||||
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~~i~~~~------------~~-----------~~LS~G~~qrv~laral~~~p~illlD 136 (194)
T cd03213 82 KIIGYVPQDDI--LHPTLTVRETLMFAA------------KL-----------RGLSGGERKRVSIALELVSNPSLLFLD 136 (194)
T ss_pred heEEEccCccc--CCCCCcHHHHHHHHH------------Hh-----------ccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 46999999863 677788888764210 00 179999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~ 530 (568)
|||++||+.++..+.+.|.++ +.|||+||||.+ .+..+||++++|++|++..
T Consensus 137 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 999999999999999999765 569999999996 7888999999999999864
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=333.43 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=178.7
Q ss_pred CCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC----ccEEEECC--------
Q psy16366 333 PPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN----KGELRKSP-------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~-------- 397 (568)
.++|+++|+++.|... ..+++||||+|.+||++||||.+||||||+++.|.|++++. +|+|.++.
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 3589999999999432 25999999999999999999999999999999999999987 79997653
Q ss_pred -------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCC----HHHHHHHHHhCCCCCcccc-CCCCCCCHhHHHH
Q psy16366 398 -------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLP----YEKSRRQLGMFGLPSYAHT-IPIRDLSGGQKAR 461 (568)
Q Consensus 398 -------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~----~~~~~~~L~~~~l~~~~~~-~~~~~LSgGqkqR 461 (568)
..+|+|+||+|...+.+-+++.+.+... .+.. ..++.++|+.+||++.... +++++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 2579999999988888888887655432 1222 2345678999999875543 4789999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCH--
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDF-- 535 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~-- 535 (568)
|+||+||+.+|++||+||||++||+..+..+.++|+++ +.++|+||||+..+.++||+++||++|++++. |+.
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~~~ 241 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET-GPTEE 241 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCHHH
Confidence 99999999999999999999999999999999988754 67999999999999999999999999999874 443
Q ss_pred ------HHHHHHHHHHHh
Q psy16366 536 ------DDYREKLLTSLG 547 (568)
Q Consensus 536 ------~~~~~~~~~~~~ 547 (568)
+.|.+.++....
T Consensus 242 i~~~p~hpYT~~Ll~a~p 259 (539)
T COG1123 242 ILSNPQHPYTRGLLAAVP 259 (539)
T ss_pred HHhccCCcccHHHHhhCC
Confidence 345555555543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=311.44 Aligned_cols=200 Identities=22% Similarity=0.310 Sum_probs=165.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP------------ 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------ 397 (568)
+++++||++.| +++++|+|+||+|.+|++++|+||||||||||+++|+|++. |++|+|.++.
T Consensus 3 ~l~~~~v~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYF-DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 57899999999 56789999999999999999999999999999999999864 4899987543
Q ss_pred -CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC-CH----HHHHHHHHhCCCCCc---cccCCCCCCCHhHHHHHHHH
Q psy16366 398 -RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL-PY----EKSRRQLGMFGLPSY---AHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 398 -~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~-~~----~~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqRv~lA 465 (568)
+..++|++|++. +++. ++.+++... .+. .. +.+..+++.+++... ....++..|||||+||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPN--PFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCc--cCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 235999999874 5654 888876432 111 11 235567888887431 12347899999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.+|+||||||||++||+.+...+.++|.++ +.|||+||||++++..+|+++++|++|++.. .|+.+++.
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE-SGLTDQIF 233 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE-eCCHHHHH
Confidence 9999999999999999999999999999999875 4699999999999999999999999999974 57776653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=293.59 Aligned_cols=207 Identities=28% Similarity=0.381 Sum_probs=170.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+|+++|++++. .++.++++|||++++||+++|+||||||||||||.|+|.+.|++|++.++.. .+.+.
T Consensus 1 mi~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 57899999999 6789999999999999999999999999999999999999999999987542 34678
Q ss_pred EecCCCCCCCCCCCHHHHHHHh---c--CCC--H--HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL---F--NLP--Y--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---- 470 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~---~--~~~--~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---- 470 (568)
++|+.. +-...|+.|.+... . +.. + ..+++.|...++.++..+ ...+|||||||||.|||+|++
T Consensus 80 lpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-DYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-chhhcCchHHHHHHHHHHHHHccCC
Confidence 899864 33335777765421 1 111 2 236788999999887765 568999999999999999987
Q ss_pred --CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HHHHHHH
Q psy16366 471 --NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLT 544 (568)
Q Consensus 471 --~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~~~~~~ 544 (568)
++++|+|||||+.||+..+..++++.+++ +++|++|-||++++..|||+|++|.+|+++. .|.+++ +..+.++
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a-~g~p~~vlt~Etl~ 235 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA-SGSPQDVLTDETLE 235 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee-cCCHHHhcCHHHHH
Confidence 34589999999999999999999988876 5789999999999999999999999999985 565555 5555444
Q ss_pred HH
Q psy16366 545 SL 546 (568)
Q Consensus 545 ~~ 546 (568)
..
T Consensus 236 ~v 237 (259)
T COG4559 236 RV 237 (259)
T ss_pred HH
Confidence 43
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=330.23 Aligned_cols=202 Identities=23% Similarity=0.319 Sum_probs=167.3
Q ss_pred CCCeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC
Q psy16366 332 PPPVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
..++++++|+++.|+++ +++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.++.... ++.+.+
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~- 94 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS- 94 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc-
Confidence 34689999999999543 4699999999999999999999999999999999999999999998875431 222222
Q ss_pred CCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 410 EHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
.+++..|+.+++.. ..+.... .+..+++.+++....+ +++.+|||||||||+|||||+.+|++|||||||+
T Consensus 95 -~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTs 172 (549)
T PRK13545 95 -GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSRLGFAISVHINPDILVIDEALS 172 (549)
T ss_pred -ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 35566788887642 1233332 2446789999986655 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++.
T Consensus 173 gLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~-~G~~~el~ 231 (549)
T PRK13545 173 VGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE-YGDIKEVV 231 (549)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999765 5799999999999999999999999999974 46665544
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=356.01 Aligned_cols=200 Identities=28% Similarity=0.449 Sum_probs=173.2
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|..+. +..||
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5899999999953 46799999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|++|++. +|. .|+.|++......+.+++.++++..++.+..... ....||||||||++|||||+++|
T Consensus 531 ~v~Q~~~--lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 531 VVLQNGR--LMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred EEccCCc--cCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999984 665 4899988643335677888888888876433221 13579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||++||+.+.+.+.+.|.+++.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.
T Consensus 608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv~-~G~~~~Ll 672 (686)
T TIGR03797 608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVVQ-QGTYDELM 672 (686)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999998999999999999975 89999999999985 57877654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=332.46 Aligned_cols=199 Identities=32% Similarity=0.488 Sum_probs=171.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
.++++|+++.|++++++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.++. +.+++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 456679999998777999999999999999999999999999999999999999999999874 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc-----CCC----CCCCHhHHHHHHHHHHHccCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT-----IPI----RDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~-----~~~----~~LSgGqkqRv~lA~al~~~p~ 473 (568)
++|+|. +|+. |+.|++... .+.+.+++.++++..|+.+.... ..+ ..|||||+|||+|||||+.+++
T Consensus 400 v~Q~p~--lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPY--LFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCc--cccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999984 6654 788887543 34667888888888887654432 123 3599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++||||||+|||.++...+.+.|.+. +.|||+|||++..+.. +|+||+|++|++++ .|.++++
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l~~-~g~~~~L 541 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRLVE-QGTHEEL 541 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCceec-cCCHHHH
Confidence 99999999999999999999999876 5799999999999976 68999999999985 5777765
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=305.49 Aligned_cols=198 Identities=27% Similarity=0.467 Sum_probs=167.6
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC------------CC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS------------PR 398 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~------------~~ 398 (568)
..+++|+++||++.| +++++|+|+||+|++||+|+|+|||||||||||++++|.++|++|.+... .+
T Consensus 27 ~~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 27 INEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CCcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 456789999999999 78999999999999999999999999999999999999999999987532 25
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh-------c--CCC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL-------F--NLP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~-------~--~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
.+||+++..-...+....++.+.+... + ..+ ...+..+|+.+|+.+..+ ++..+||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-RPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-CchhhcCHhHHHHHHHHH
Confidence 678998765444455566666644321 1 112 234667899999988555 589999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-----GGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.+|.+|||||||+|||...++.+.+.|.+.. .++|+|||..+.+..+.++++.+.+|+++.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999998763 369999999999999999999999999863
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=295.52 Aligned_cols=157 Identities=38% Similarity=0.588 Sum_probs=138.5
Q ss_pred EEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
++++|+++.|++. ..+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999432 2799999999999999999999999999999999999999999998654 235899
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
++|++ .+++ .++.+++ |||||+|||+|||+|+.+|++|||||||++
T Consensus 81 ~~~~~--~~~~-~t~~e~l-------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 81 VPQDP--FLFS-GTIRENI-------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred EcCCc--hhcc-chHHHHh-------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 99986 3454 4665553 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 484 LDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
||+.++..+.+.|.++ +.|||++|||.+++.. |+++++|++|+
T Consensus 127 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 127 LDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 9999999999999876 4689999999999987 99999999874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=320.70 Aligned_cols=203 Identities=25% Similarity=0.312 Sum_probs=167.7
Q ss_pred CCCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-----CCccEEEECC--------
Q psy16366 332 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-----PNKGELRKSP-------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~-------- 397 (568)
...+|+++|++++|++ .+++|+|+||+|.+|+++||+||||||||||+++|+|+.+ |++|+|.+++
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3468999999999953 3579999999999999999999999999999999999986 5799987521
Q ss_pred -----CeeEEEEecCCCCCCCCCCCHHHHHHHh--c-CCCH-H----HHHHHHHhCCCCCc---cccCCCCCCCHhHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDTPCEYLMKL--F-NLPY-E----KSRRQLGMFGLPSY---AHTIPIRDLSGGQKAR 461 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~-~~~~-~----~~~~~L~~~~l~~~---~~~~~~~~LSgGqkqR 461 (568)
+..++|++|++. +| ..|+.+++... + +... + .+..++..++|... ....++..||||||||
T Consensus 157 ~~~~lr~~i~~v~q~~~--~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 157 SSLELRTRIGMVFQKPT--PF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred chHhhhccEEEEecCCc--cC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 346999999974 55 46888887521 1 2222 1 24567888887421 1224678999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||||+.+|+||||||||++||+.+...+.+.|.++ +.|||+|||+++++.++||+|++|++|++++. |+++++
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~-g~~~~l 311 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA-GETKTI 311 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999999866 47999999999999999999999999999864 666665
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=299.51 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=148.3
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC-------CeeEE
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP-------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~-------~~~i~ 402 (568)
.|+++|+++.|++ ++++|+++||+|.+|++++|+|||||||||||++|+|+. +|++|+|.++. +..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6889999999953 267999999999999999999999999999999999986 48999998754 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|++|++. +++..|+.+++.... .+ ..|||||+|||+|||||+.+|++|||||||+
T Consensus 83 ~~~q~~~--~~~~~tv~~~l~~~~---------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 83 YVEQQDV--HSPNLTVREALRFSA---------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred EecccCc--cccCCcHHHHHHHHH---------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCc
Confidence 9999863 677788888865210 00 0799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEEC-CeEEE
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEK-KNIRK 530 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~-g~i~~ 530 (568)
+||+.+...+.+.|.++ +.|||+||||.+ .+..+||++++|++ |+++.
T Consensus 138 ~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 138 GLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 99999999999999765 579999999998 47889999999999 88864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=311.66 Aligned_cols=202 Identities=19% Similarity=0.224 Sum_probs=162.0
Q ss_pred CCeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.+.++++|++++|++. +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999532 5799999999999999999999999999999999999999999998643 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH---------HhC--CCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL---------GMF--GLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L---------~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +++ .|+.+++..........+..++ ..+ ++..... .++..|||||+||++|||||+
T Consensus 97 i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 97 LSIILQDPI--LFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEEECCCCc--ccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHHh
Confidence 899999873 554 4776665321111122233333 333 4443333 256899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|++|||||||++||+.+...+.++|.++ +.|||+|||+++.+.. |+++++|.+|+++. .|+.+++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~-~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVE-CDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 999999999999999999999999999764 5799999999999986 99999999999974 577766543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=299.31 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=149.2
Q ss_pred eEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC---CCccEEEECC----------C
Q psy16366 335 VLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT---PNKGELRKSP----------R 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~----------~ 398 (568)
++.++||+|.|+. ++.+|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.++. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999963 4579999999999999999999999999999999999999 8999987542 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
..++|++|++ .+++..|+.+++..... +. . ..++..|||||+||++|||||+.+|++||||
T Consensus 83 ~~i~~~~q~~--~~~~~~tv~~~l~~~~~---------~~-------~-~~~~~~LS~Ge~qrl~laral~~~p~llllD 143 (202)
T cd03233 83 GEIIYVSEED--VHFPTLTVRETLDFALR---------CK-------G-NEFVRGISGGERKRVSIAEALVSRASVLCWD 143 (202)
T ss_pred ceEEEEeccc--ccCCCCcHHHHHhhhhh---------hc-------c-ccchhhCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 3689999986 36777899888753210 00 2 2367899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEE-ecchHHHHhhCceEEEEECCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILV-SHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~v-sHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|||++||+.+++.+.++|.++ +.|+|++ +|+.+.+.++||++++|++|+++.
T Consensus 144 EPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 144 NSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999999999999999998865 3465555 566788889999999999999864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=350.07 Aligned_cols=202 Identities=28% Similarity=0.404 Sum_probs=170.8
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|+.+ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|..+. |..|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 358999999999654 3699999999999999999999999999999999999999999998764 5689
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
||++|++. +|. -|+.|++... ...+.+++.+++...|........ .-..||||||||++|||||++
T Consensus 550 g~V~Q~~~--Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 550 GYVLQDPF--LFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred eEEcccch--hhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 99999973 554 5888887643 344556676666665554333222 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+|||||||||+||+++...+.+.|.++. .|+|+|||+...+. .||+|+||++|++++ .|+.+++..
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gkiv~-~gs~~ell~ 696 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKIVE-QGSHEELLA 696 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCceec-cCCHHHHHH
Confidence 999999999999999999999999999985 89999999999996 579999999999974 688777654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=310.89 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=159.1
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
..+.|+++|+++. ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. .++|++|++.
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~-- 108 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW-- 108 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--
Confidence 4567999999985 35799999999999999999999999999999999999999999998865 5999999863
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+++ .++.+++..........+...+..+++..... ..++..|||||+|||+|||+|+.+|++|||||||
T Consensus 109 l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 109 IMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred ccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 555 48888765322122223334445455432111 1235799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 482 NNLDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||+.++..+.+.+ ..+ +.|||+||||++++. .|+++++|.+|+++. .|+.+++.+
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999888754 333 579999999999985 799999999999874 567766653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=287.35 Aligned_cols=193 Identities=28% Similarity=0.425 Sum_probs=166.9
Q ss_pred CeEEEEeeEEEeCCCce--eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~--il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~ 405 (568)
+++.+++++.+| .+++ +|+|+|++|.+||.++++||+||||||||++++|+.+|..|+|..+.+ ..-|.+|
T Consensus 2 ~~l~~~~~sl~y-~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVF 80 (259)
T COG4525 2 CMLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVF 80 (259)
T ss_pred ceeehhheEEec-CCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEe
Confidence 357789999999 4555 999999999999999999999999999999999999999999987654 3569999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .++|.+++.++... ..+++. +.+.+.|..+||.+..+ +.|.+|||||||||-|||||+.+|++|+||
T Consensus 81 Q~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 81 QNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-KYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred ccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-cceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 996 48999999887643 345543 34567899999998775 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEE--CCeEEE
Q psy16366 479 EPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALE--KKNIRK 530 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~--~g~i~~ 530 (568)
||+.+||.-+++.+.++|-+ .++.+++||||++.+.-+++++++|. .|+|+.
T Consensus 158 EPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 158 EPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 99999999998887777643 47789999999999999999999998 467754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=346.50 Aligned_cols=200 Identities=29% Similarity=0.416 Sum_probs=169.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|.|++++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|..+. +..|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4899999987755678999999999999999999999999999999999999 9999998764 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccc-------c---CCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~-------~---~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.|++... .+.+.+++.++++..++.+... + .....||||||||++|||||+++|
T Consensus 428 v~Q~~~--LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQ--LPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCc--CCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999984 665 4899988653 3466777777777666543211 1 123579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|||||||||+||.++.+.+.+.|.++ +.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl~~G~i~e-~G~~~eL~~ 572 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVMQDGQIVQ-QGDYAELSQ 572 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEEeCCeEee-cCCHHHHHh
Confidence 999999999999999999999999876 5799999999999865 89999999999974 688777643
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=294.21 Aligned_cols=209 Identities=23% Similarity=0.393 Sum_probs=176.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+++++||++.| +++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|.+.+. .+++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 57899999999 7899999999999999999999999999999999999999999999987643 24555
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-c----C-C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-F----N-L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~----~-~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+-|.. ++....|+.+.+... + + + +...+.++++.++|....++ ...+||||||||+.+|..++++.+.
T Consensus 80 LkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dr-yLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 80 LKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDR-YLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHH-hHHhcccchhhhhhhheeeeccCcE
Confidence 66654 466778888866421 1 1 1 23457788999999876654 7899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH-HHHHHHHhh
Q psy16366 475 LILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR-EKLLTSLGE 548 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~-~~~~~~~~~ 548 (568)
++||||.|+||......+++.|+ ++++|||+|-||+.|+..++|+|+.|++|+++ ..|++++.. .+.+.++.+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv-~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVV-KQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEE-ecCCHHHhcCHHHHHHHhc
Confidence 99999999999998887777775 56899999999999999999999999999997 578888865 556666543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=345.69 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|.|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|++|++. +|+. |+.+++......+.+++.++++.+|+....... ....||||||||++|||||+.+|
T Consensus 419 ~v~Q~~~--lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 419 MVQQDPV--VLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EEccCCc--cccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 9999984 6765 889988654455677788888887765322211 23579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+++...+.+.|.++ ++|+|+|||+++.+.. ||+|++|++|+++. .|+++++.
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l~~G~i~~-~G~~~~L~ 562 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVLHRGQAVE-QGTHQQLL 562 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999999999876 5799999999999875 89999999999985 57877754
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=353.38 Aligned_cols=201 Identities=30% Similarity=0.405 Sum_probs=172.4
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35899999999964 36799999999999999999999999999999999999999999998753 4679
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++.+.++..++....... ....||||||||++|||||++
T Consensus 556 ~~v~Q~~~--lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 556 AMVDQDIF--LFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred eEEecCCh--hhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999974 664 5899988643 245677787777777765432211 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+||||||||++||..+...+.+.|.+.+.|+|+|||+++.+.. ||+|++|++|+++. .|+.+++.
T Consensus 633 ~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~-~G~~~~Ll 699 (710)
T TIGR03796 633 NPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQ-RGTHEELW 699 (710)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEeCCEEEE-ecCHHHHH
Confidence 999999999999999999999999999888999999999999975 89999999999975 58877654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=306.93 Aligned_cols=193 Identities=26% Similarity=0.338 Sum_probs=160.7
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEe
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFD 405 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~ 405 (568)
+++||++. .+|+|+||+|.+|++++|+||||||||||+++|+|++++ +|+|.++.. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46777764 279999999999999999999999999999999999864 899986431 3489999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc--CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc-------CC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF--NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NP 472 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~-------~p 472 (568)
|++. ++...|+.+++.... ... .+.+.++++.+++....+ +++..|||||||||+||+||+. +|
T Consensus 76 q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9863 455678888765321 111 234677899999976554 4789999999999999999997 67
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||++||+.++..+.++|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 221 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA-SGRRDEVL 221 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999998765 4699999999999999999999999999974 56776654
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=277.23 Aligned_cols=199 Identities=29% Similarity=0.439 Sum_probs=173.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC-----------------CC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-----------------PR 398 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-----------------~~ 398 (568)
|+++++++.| |...+|-||+|+...|+.+.++||+|+|||||+|.|.=+..|.+|+..+. .+
T Consensus 3 irv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 6899999999 77889999999999999999999999999999999999999999997642 14
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
..+|++||.. .+++.+|+.+++.. ..+++.+ ++.++|+++.|..+.++ .+-.|||||+|||+|||||++
T Consensus 82 ~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr-~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 82 RNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR-YPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred Hhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc-CceecccchhhhHHHHHHHhc
Confidence 5799999986 59999999998854 2355543 35578999999988876 457899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|++||||++|||+-...+.++|+++ +.|-++|||..+++.+++.+++.|++|+|++. |+.+-+.
T Consensus 159 kpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~-g~a~~ft 229 (242)
T COG4161 159 EPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ-GDASCFT 229 (242)
T ss_pred CCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee-cchhhcc
Confidence 99999999999999999999999998877 45789999999999999999999999999864 5555443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=343.89 Aligned_cols=201 Identities=30% Similarity=0.402 Sum_probs=170.4
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|..++ +..|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999653 6799999999999999999999999999999999999999999998754 35799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cC-CCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FN-LPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~-~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +|+ .|+.+++... .+ .+.+++.+.++..++....... .-..||||||||++|||||++
T Consensus 421 ~v~Q~~~--lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH--LFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce--eec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999974 665 5889988643 22 4677788888877755432211 125699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||||||||++||+++...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~-~D~Ii~l~~g~i~e-~g~~~~l~~ 567 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVE-RGTHAELLA 567 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEEECCEEEE-eCCHHHHHh
Confidence 99999999999999999999999999876 4799999999998864 89999999999975 578777643
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=296.89 Aligned_cols=164 Identities=33% Similarity=0.488 Sum_probs=138.2
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------CeeEEEEecCCCCCCC
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLRIGKFDQHSGEHLF 413 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~i~~~~q~~~~~l~ 413 (568)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++. +..++|++|++...++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 566799999999999999999999999999999999999999999997642 2358999998743344
Q ss_pred CCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 414 PDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 414 ~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
..|+.+++... .+... +.+.+++..+++....+ +++.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 35888876431 22322 34567899999987655 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecchHH
Q psy16366 487 ESIDALAEAIKNY---QGGVILVSHDERL 512 (568)
Q Consensus 487 ~~~~~l~~~l~~~---~~tvi~vsHd~~~ 512 (568)
.++..+.++|.++ +.|||+||||+++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 9999999999765 5699999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=323.19 Aligned_cols=195 Identities=27% Similarity=0.403 Sum_probs=171.7
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Ce
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RL 399 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~ 399 (568)
.+|+++++|++++| ++.++|++|||+|++||++||+|.||||||||+|+|+|.++|++|+|.++. ..
T Consensus 5 ~~~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 5 TPPLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ccceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 35789999999999 678999999999999999999999999999999999999999999998764 24
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh------cC-CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL------FN-LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~------~~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
.|+.++|+.. +++++|+.|++... ++ ++ ...++++|..+++... ...++.+||.||||.|+||||+
T Consensus 84 GI~~V~QEl~--L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 84 GIATVHQELS--LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred CcEEEeechh--ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHH
Confidence 5899999975 99999999987421 11 12 2456778999998644 3458999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
..+++||||||||+.|+....+.|.+.++++ +.+||+|||.++.+.++||++.||.||+++.
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 9999999999999999999999999888765 6799999999999999999999999999763
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=349.84 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=170.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..+. +..|||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 589999999996567899999999999999999999999999999999999999999998764 357999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +|.. |+.+++... ...+.+++.++++..++.+.... .....||||||||++||||++++
T Consensus 553 v~Q~~~--lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPY--IFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCce--ehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999984 6654 899988643 34566777777777666432211 12357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||.++...+.+.|.++ +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~-~G~~~~L~ 696 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKIIE-QGSHDELL 696 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999876 579999999999885 589999999999974 68877654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=319.81 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=171.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|.|++++++|+++||+|++|+.+||+|+|||||||++|+|.+.+. .+|+|..++ |..||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 459999999999656669999999999999999999999999999999999999 899998754 56799
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|+||+. .+|.+ |+..++.. ....+.+++-+.++++|+.+...+. +...|||||||||+||||++.+
T Consensus 429 ~VPQd~--~LFnd-TIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd 505 (591)
T KOG0057|consen 429 VVPQDS--VLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD 505 (591)
T ss_pred EeCCcc--cccch-hHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence 999996 47754 77777653 2345678888888888886533222 2457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+|++||||||+||.++...+.+.+... +.|+|+|-|+++++.. ||+|+++++|++.++ |+.+++..
T Consensus 506 a~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 506 APILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred CCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 9999999999999999999999999874 5799999999999976 699999999999865 67766644
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=299.37 Aligned_cols=181 Identities=26% Similarity=0.388 Sum_probs=151.2
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEecCCCCCCCCCCCHHHHHHHh-----
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKL----- 425 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q~~~~~l~~~~~~~e~l~~~----- 425 (568)
|+|.+|++++|+||||||||||+++|+|+++|++|+|.++.. ..++|++|++........|+.+++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999987653 469999998753222346787776431
Q ss_pred --cCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 426 --FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 426 --~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
... ....+..+++.+++....+ .++.+|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 111 1234677899999986555 468999999999999999999999999999999999999999999999865
Q ss_pred ---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 500 ---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 500 ---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.|||+||||++++..+|++++++ +|+++ ..|+.+++.+
T Consensus 160 ~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 469999999999999999999999 89987 4677777654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=293.95 Aligned_cols=176 Identities=27% Similarity=0.298 Sum_probs=149.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------eeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------LRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~i~~~~q~ 407 (568)
+|+++|++++| +++.+++ +||+|++|++++|+|+||||||||+++|+|+++|++|+|.++.. ..++|++|+
T Consensus 1 ~l~~~~l~~~~-~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNI-EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEE-CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 47899999999 4566665 99999999999999999999999999999999999999987642 348899987
Q ss_pred CCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 408 SGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
+ .++...|+.+++..... .....+..++..+++..... +++.+||||||||++||||++.+|++|||||||++||
T Consensus 79 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 L--GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred c--CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 6 35567888887753221 12345677889999986554 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCceEEEEecchHHHHh
Q psy16366 486 IESIDALAEAIKN---YQGGVILVSHDERLIRE 515 (568)
Q Consensus 486 ~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~ 515 (568)
+.+...+.+.|.+ .+.|||+||||.+++..
T Consensus 156 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 156 KENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 9999999998863 36799999999999876
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=346.55 Aligned_cols=202 Identities=30% Similarity=0.449 Sum_probs=171.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|++ .+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 35899999999964 35799999999999999999999999999999999999999999998764 4579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.|++.... +.+.+++.++++..++.+..... ....||||||||++|||||++
T Consensus 542 ~~v~Q~~~--lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 542 GYVPQDPR--LFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EEECCChh--hhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999984 665 48999886432 35677788887777665432221 235799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+++...+.+.|.+. +.|+|+|||+++.+. .||+|++|++|++++ .|+.+++.+
T Consensus 619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~e-~G~~~eLl~ 688 (694)
T TIGR03375 619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIVA-DGPKDQVLE 688 (694)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEEe-eCCHHHHHH
Confidence 99999999999999999999999999876 579999999999985 689999999999985 578777654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=300.35 Aligned_cols=194 Identities=25% Similarity=0.370 Sum_probs=163.3
Q ss_pred CeEEEEeeEEEeCCC--------ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 334 PVLGLHDVTFGYPGG--------KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--------~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
++++++|+++.|+-. ..+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|.+.+..-..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence 589999999999532 268999999999999999999999999999999999999999999876433100
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
+ + .....+.+.++|..+|+......+.+++|||||+||++|||||+.+|+++++|||||+||
T Consensus 80 ------~----~--------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 80 ------L----S--------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred ------c----c--------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 0 0 001234577899999998766667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEc-------CCHHHHHHHHHHHHhh
Q psy16366 486 IESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFN-------GDFDDYREKLLTSLGE 548 (568)
Q Consensus 486 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~-------g~~~~~~~~~~~~~~~ 548 (568)
...+..+.++|.++ +.|.++||||+..+..+||++.+|..|++++.. .+.+.|.+.++.++..
T Consensus 142 vSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~a~p~ 215 (268)
T COG4608 142 VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLSAVPV 215 (268)
T ss_pred hhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHHhCCc
Confidence 99988888888654 679999999999999999999999999998753 2445677777777653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=340.72 Aligned_cols=196 Identities=24% Similarity=0.423 Sum_probs=159.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc---CCCccEEEECCCeeEEEEecCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL---TPNKGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~~~~~~i~~~~q~~~ 409 (568)
..+|.++|++++| +++++|+|+||+|.+|+++|||||||||||||||+|+|.. .|+.|+| +|+.|+..
T Consensus 175 ~~~I~i~nls~~y-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I--------~~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISV-GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI--------LHVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEe-CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE--------EEEeccCC
Confidence 4579999999999 5778999999999999999999999999999999999964 4566654 45555421
Q ss_pred CCCCCCCCHHHH-----------------------------------------------------HHHhc---C--CCHH
Q psy16366 410 EHLFPDDTPCEY-----------------------------------------------------LMKLF---N--LPYE 431 (568)
Q Consensus 410 ~~l~~~~~~~e~-----------------------------------------------------l~~~~---~--~~~~ 431 (568)
..+.++.+. +...+ + ....
T Consensus 246 ---g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 322 (718)
T PLN03073 246 ---GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEA 322 (718)
T ss_pred ---CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHH
Confidence 111121110 00000 0 0123
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchH
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 511 (568)
++..+|..+||......+++.+|||||||||+||++|+.+|+||||||||||||+.++.+|.+.|+++++|||+||||++
T Consensus 323 r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 323 RAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred HHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45667888999754445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 512 LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 512 ~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++..+|+++|+|++|++..+.|+|+.|..
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999889999988754
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=337.89 Aligned_cols=201 Identities=28% Similarity=0.421 Sum_probs=172.9
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
+.++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 5799999999999999999999999999999999999999999998754 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc---------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT---------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~---------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
+|++|++. +|. .|+.+++... ...+.+++.++++.+++.+.... .....||||||||++||||++++
T Consensus 417 ~~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~ 493 (574)
T PRK11160 417 SVVSQRVH--LFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD 493 (574)
T ss_pred eEEcccch--hhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 99999974 665 4889987543 24567788889999988765432 12457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|++|||||||++||+++...+.+.|.++ +.|+|+|||+++.+.. ||++++|++|++++ .|+.+++.
T Consensus 494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 561 (574)
T PRK11160 494 APLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQIIE-QGTHQELL 561 (574)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 9999999999999999999999999876 5799999999999865 89999999999985 57776653
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=323.56 Aligned_cols=201 Identities=30% Similarity=0.442 Sum_probs=173.7
Q ss_pred eEEEEeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.++++||+|+|+++. ++|+|+||++.+||++||+|++|||||||+++|+|.++|++|+|..+. +..|+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999997765 699999999999999999999999999999999999999999998754 23688
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~ 471 (568)
+++|.+ ++|. .|+.+++.. ..+.+.+++.++|+.+||.+.....| -..|||||+||++|||+|+++
T Consensus 416 vl~Qr~--hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRV--HLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccch--HHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 899986 4665 478888754 34567788999999999876554432 357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+++||||||.|||+.+.+.+++.|.+. ++|+|||||++..++ .||+|++|++|++++ +|++.++..
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie-~G~~~~Ll~ 561 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIE-EGTHAELLA 561 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeee-cCCHHhhhc
Confidence 9999999999999999999999999765 679999999999997 479999999999974 687776543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=362.91 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=179.1
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeE
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i 401 (568)
.+.|+++||++.|+ +++.+++|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 46899999999994 357899999999999999999999999999999999999999999998653 2469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||++|++ .+++.+|+.|++.. ..+.+ .+++.++|+.+||.+..+ +++.+|||||||||+||+||+.+|+|
T Consensus 1006 G~~pQ~~--~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHN--ILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCC--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 37888999998743 22333 234677899999987665 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
|||||||+|||+.+++.+.++|+++ +.|||++|||++++..+||++++|.+|++.. .|+.+.+++..
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~-~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC-SGTPLFLKNCF 1151 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHHHhc
Confidence 9999999999999999999999876 5699999999999999999999999999974 57777665543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=281.46 Aligned_cols=190 Identities=28% Similarity=0.398 Sum_probs=164.4
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKF 404 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~ 404 (568)
++++++.+.- ++.++|+|+||++++||+++|+||+|||||||+|+++-+++|++|++.+.+ +..|+|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 4455554443 567899999999999999999999999999999999999999999998753 4678999
Q ss_pred ecCCCCCCCCCCCHHHHHHH-----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMK-----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.|.|. +|++ |+.+++.. ....+...+...|++|+++.....+++.+||||||||++|+|-|..-|+||||||
T Consensus 83 ~Q~pa--Lfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 83 AQTPA--LFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred HcCcc--cccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 99985 7765 67776642 2233556677899999999887788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 480 PTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
||++||+.+.+.+.++|..| ..+|++||||.+...+.++++|-+..|.+-
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999999999776 469999999999988999999999998764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.27 Aligned_cols=201 Identities=28% Similarity=0.435 Sum_probs=168.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..|+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998764 35799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... .+.+.+++...++.+++...... .....||||||||++|||||+++
T Consensus 413 ~v~Q~~~--lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 413 VVFQDAG--LFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred EEecCcc--ccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 664 5889987643 23456677777776665432211 12346999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||+.+...+.+.|.+. ++|||+|||+.+.+. .||++++|++|++.. .|+.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~-~g~~~~l~ 557 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVVE-SGSFDELV 557 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999876 579999999999885 589999999999975 56666653
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=334.65 Aligned_cols=201 Identities=33% Similarity=0.473 Sum_probs=165.9
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 369999999999643 5899999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCC-----------CCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG-----------LPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~-----------l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+. |+.+++.... ..+.+++.+.++..+ ++.... .....||||||||++||||++
T Consensus 395 ~~v~q~~~--lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 395 GYLPQDVE--LFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALY 470 (544)
T ss_pred EEecCCcc--cccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHh
Confidence 99999974 6654 8889886322 244555555444443 332222 245789999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|++|||||||++||+++.+.+.+.|.++ +.|+|+|||+.+.+. .||++++|++|+++. .|+.+++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRIAR-FGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEe-eCCHHHHhh
Confidence 999999999999999999999999999875 479999999999875 699999999999974 577766543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=343.87 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=168.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35899999999964 35799999999999999999999999999999999999999999998764 357
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~ 469 (568)
|+|++|++. +|. .|+.+++... ...+.+++.++++..++.+..... ....||||||||++||||++
T Consensus 557 i~~v~Q~~~--lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPV--LFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCcc--ccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999984 564 5899988643 234567777888877765432211 23579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|+||||||||++||.++...+.+.....+.|+|+|||+++.+.. ||+|++|++|++++ .|+.+++.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~-aD~IivL~~G~ive-~Gt~~eL~~ 702 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVE-MGTHKQLME 702 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh-CCEEEEEECCEEEE-eeCHHHHHh
Confidence 9999999999999999999999988333336799999999999864 89999999999975 577776543
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=284.79 Aligned_cols=154 Identities=29% Similarity=0.349 Sum_probs=134.4
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCH
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~ 418 (568)
.||++.| +++.+++++ |+|++|++++|+||||||||||+|+|+|+++|++|+|.++. ..++|++|++.
T Consensus 4 ~~l~~~~-~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRY-GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEE-CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC---------
Confidence 4789999 678889884 99999999999999999999999999999999999999875 35888887541
Q ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 419 CEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 419 ~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
||||||||++|||+|+.+|+++||||||++||+.++..+.+.|.+
T Consensus 72 -----------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 72 -----------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred -----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876
Q ss_pred c----CceEEEEecchHHHHhhCceEEEEECCeEE-EEcCCHHHHH
Q psy16366 499 Y----QGGVILVSHDERLIRETDCELWALEKKNIR-KFNGDFDDYR 539 (568)
Q Consensus 499 ~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~-~~~g~~~~~~ 539 (568)
+ +.|||+||||++++..+|+++++|+++..+ ..-|++..++
T Consensus 117 ~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 117 LSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 5 379999999999999999999999987553 3334444443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=335.88 Aligned_cols=199 Identities=27% Similarity=0.399 Sum_probs=169.0
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..+. +..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5899999999964 36799999999999999999999999999999999999999999998764 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +| +.|+.+++.... ..+.+++.+.++.+|+....... .-..||||||||++||||++.
T Consensus 410 ~v~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVV--LF-NDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCcc--cc-cccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999984 55 458999886432 45677788888887765432211 124699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+||||||||++||..+.+.+.+.|.++ +.|+|+|||+...+. .||++++|++|++.. .|+.+++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~~-~g~~~~l 554 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIVE-RGTHNEL 554 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEEe-eCCHHHH
Confidence 99999999999999999999999999887 579999999998875 589999999999975 4666654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=333.17 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 3589999999996556799999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCC-----------CccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~-----------~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
|++|++. +|. .|+.+++... ...+.+++.+.+...++. .... .....||||||||++|||||+.
T Consensus 413 ~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 413 TVFQDAG--LFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEccCCc--cCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhc
Confidence 9999974 554 5888988643 233455555555444332 2222 2456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.+.+.+.+.|.+. +.|||+|||+.+.+. .||++++|++|++.. .|+.+++.+
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 558 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIE-KGSFQELIQ 558 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEE-ECCHHHHHH
Confidence 99999999999999999999999999876 579999999999996 599999999999974 577777643
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=337.95 Aligned_cols=187 Identities=22% Similarity=0.315 Sum_probs=164.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
..++++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|....+..++|++|++. ++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MT 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CC
Confidence 4799999999996566899999999999999999999999999999999999999999998877788999999974 56
Q ss_pred CCCCHHHHHHHhc--------CCCHHHHHHHHHhCCCCCccccCC---------CCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 414 PDDTPCEYLMKLF--------NLPYEKSRRQLGMFGLPSYAHTIP---------IRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 414 ~~~~~~e~l~~~~--------~~~~~~~~~~L~~~~l~~~~~~~~---------~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
+. |+.+++.... +...+++.++++.+++...... + ...||||||||++|||||+.+|++||
T Consensus 528 ~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred Cc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 55 8888875321 2345667888999998765443 3 36899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
|||||++||+.+.+.+.+.+++.+.|||+||||++++ ..||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999889999999999997 57999999973
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=360.31 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=177.1
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
.+|+++||++.|++ .+.+++||||+|.+||++||+||||||||||+|+|+|+++|++|+|..++ +..||
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 47999999999943 26799999999999999999999999999999999999999999998653 24599
Q ss_pred EEecCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++ .+++.+|+.|++.. ..+.+.. .+.++|+.++|..+.+ +++++|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-RLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986 47788999998743 2344332 3456799999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
||||||+|||+.+++.+.+.|.+. +.|||++||+++++..+|+++++|.+|+++ ..|+.+++++..
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~-~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQ-CLGTIQHLKSKF 2161 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHHHh
Confidence 999999999999999999998764 569999999999999999999999999997 457777765543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=311.72 Aligned_cols=194 Identities=28% Similarity=0.430 Sum_probs=172.6
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.+.++++++++.| ++..+.++|||+|++||+.||+|.||||||||+++|.|+++|++|+|+++. +..
T Consensus 2 ~~~l~~~~itK~f-~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 2 EPALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred CceEEEeccEEEc-CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 3578999999999 478899999999999999999999999999999999999999999998764 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcC------CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFN------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~------~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
||+++||+. |++..|+.|++..... .+ .+++.++..++||+-..+. .+.+||-||||||.|.++|.+
T Consensus 81 IGMVhQHF~--Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~-~V~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 81 IGMVHQHFM--LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDA-KVADLSVGEQQRVEILKALYR 157 (501)
T ss_pred CcEEeeccc--cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccc-eeecCCcchhHHHHHHHHHhc
Confidence 999999984 8999999998753221 12 2456678899999866654 789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|++|||||||+-|-|...+.|.+.|+.+ ++|||+|||-+..+.++||++-||..|+++.
T Consensus 158 ~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 158 GARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999999999998765 7899999999999999999999999999864
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=333.91 Aligned_cols=201 Identities=31% Similarity=0.486 Sum_probs=169.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
-++++||+|+|++++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|..++ +.+|++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 489999999996578999999999999999999999999999999999999999999998743 467999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~-------~~---~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.+++.... +.+.+++.++++..++.+.. ++ .....||||||||++||||++.+|
T Consensus 408 V~Qd~~--LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPL--LFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccce--eec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999974 776 68999886432 35666777666655433211 11 123579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+||||||||++||+++...+.+.+.+. +.|+|+|+|.+..+.. ||+|++|++|++++ .|+.+++..
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e-~G~h~eLl~ 552 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVE-RGTHEELLA 552 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999754 4599999999999987 89999999999875 578777654
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=278.36 Aligned_cols=202 Identities=28% Similarity=0.447 Sum_probs=178.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
+++|.++||+++| ++..+++++||+|.+||.-+|+||||||||||+.+|+|..+|+.|++.+.. +.
T Consensus 3 ~~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 3 PIILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred CceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 3689999999999 788999999999999999999999999999999999999999999998754 34
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhcC------------C---CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLFN------------L---PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~~------------~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
.||.-||.|. .|...|+++++.-..+ . ....+.+.|+..||....+. +...||.||||++.|
T Consensus 82 GIGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-~A~~LSHGqKQwLEI 158 (249)
T COG4674 82 GIGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-LAALLSHGQKQWLEI 158 (249)
T ss_pred ccCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-hhhhhccchhhhhhh
Confidence 5888899885 8899999998742111 1 12357789999999987764 789999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+..++++|++|+||||++|+-.+......++|+... .+|++|.||+.|+.++++++-+|+.|.+. .+|+.++..
T Consensus 159 GMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL-~EGsld~v~ 234 (249)
T COG4674 159 GMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL-AEGSLDEVQ 234 (249)
T ss_pred heeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee-ecccHHHhh
Confidence 999999999999999999999999999999998874 58999999999999999999999999985 588887764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=330.94 Aligned_cols=201 Identities=25% Similarity=0.372 Sum_probs=167.2
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 358999999999643 5799999999999999999999999999999999999999999998753 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++...++..++...... .....||||||||++||||+++
T Consensus 392 ~~v~q~~~--lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 392 AVVSQTPF--LFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred EEEccCCe--ecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999974 665 4889988643 23456666677766665422111 1246799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+. .||++++|++|+++. .|+.+++.
T Consensus 469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 537 (569)
T PRK10789 469 NAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIAQ-RGNHDQLA 537 (569)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEEE-ecCHHHHH
Confidence 99999999999999999999999999875 579999999999886 489999999999974 57766553
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.14 Aligned_cols=196 Identities=23% Similarity=0.253 Sum_probs=162.1
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 3689999999996556799999999999999999999999999999999999999999998653 34799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----CCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----PIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++|++. +|.. |+.++ ....+.+.+.+.++.+++....... ....||||||||++||||++++|++||||
T Consensus 401 ~v~q~~~--lf~~-ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD 474 (547)
T PRK10522 401 AVFTDFH--LFDQ-LLGPE---GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD 474 (547)
T ss_pred EEecChh--HHHH-hhccc---cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999874 5543 33333 1123455677788888887543210 02489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHH
Q psy16366 479 EPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~ 536 (568)
|||++||+++...+.+.|.+ .+.|||+|||+.+.+. .||++++|++|++.+..++-.
T Consensus 475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 99999999999998887753 3689999999998875 689999999999998877643
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=323.86 Aligned_cols=202 Identities=32% Similarity=0.436 Sum_probs=166.2
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|.||.. .++|+|+||+|++|+++|||||||+||||+.++|..++.|++|+|..++ +.+
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 469999999999753 3699999999999999999999999999999999999999999998653 468
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCC-------CCCcccc---CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFG-------LPSYAHT---IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~-------l~~~~~~---~~~~~LSgGqkqRv~lA~al~ 469 (568)
||++.|+|. +|. -|+.|++... .+.+.+++.+..++.+ ++.-.++ .+-.+||||||||+||||||+
T Consensus 544 Ig~V~QEPv--LFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPV--LFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeeccce--eec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 999999985 665 4788887643 2445566655444322 2221111 134589999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++|.||||||.||+||.++...+.++|.+. +.|||+|.|.+..++. +|+|+++++|++.+ .|+++++.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~ 691 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLS 691 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhh
Confidence 999999999999999999999999999765 5799999999999975 78999999999986 477777653
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=287.99 Aligned_cols=185 Identities=21% Similarity=0.250 Sum_probs=149.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-ECCCeeEEEEecCCCCCCCCCCCHHHHHHHh---
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--- 425 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~--- 425 (568)
.+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|. ..... + .+.+. ..+++..|+.+++...
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~--~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGAN--SFILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-ccccc--cccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999996 44321 1 12222 3477888999887532
Q ss_pred cCCCHHHHH-HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh-c-Cce
Q psy16366 426 FNLPYEKSR-RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN-Y-QGG 502 (568)
Q Consensus 426 ~~~~~~~~~-~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-~-~~t 502 (568)
.+....+.. .++..++++...+ .++..||||||||++||+||+.+|++|||||||++||+.+...+.+.|.+ . +.|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ 155 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLEQCYT-DRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKG 155 (213)
T ss_pred cCCCHHHHHHHHHHHhChhHHhh-chHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCc
Confidence 234433333 3345667776544 47899999999999999999999999999999999999999999887753 2 468
Q ss_pred EEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 503 VILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 503 vi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|+||||+.++..+|+++++|++|+++ +.++.++.++
T Consensus 156 ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 192 (213)
T PRK15177 156 LIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQATA 192 (213)
T ss_pred EEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHHHH
Confidence 999999999999999999999999997 5577666543
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=339.48 Aligned_cols=201 Identities=32% Similarity=0.424 Sum_probs=165.1
Q ss_pred CeEEEEeeEEEeCCCc--eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~--~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+||..+ ++|+++||.|++|+.++|||||||||||++++|.+++.|++|+|..++ +.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 4689999999997543 699999999999999999999999999999999999999999998653 457
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcc-------cc---CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYA-------HT---IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~-------~~---~~~~~LSgGqkqRv~lA~al~ 469 (568)
||.++|+|. +| ..|+.|++... .+.+.+++.++++..+..... ++ ..--+||||||||+||||||+
T Consensus 429 iglV~QePv--lF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEPV--LF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeechh--hh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 999999983 55 56888887643 244555555554433221111 11 112369999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+++...+.++|.+. +.|.|+|+|++..++. +|+|++|++|+|++ .|+.+++.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE-~G~h~ELi 575 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVE-QGTHDELI 575 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999876 6799999999999987 89999999999986 46666654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.71 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++. +..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 358999999999642 5799999999999999999999999999999999999999999998764 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
++|++|++. +| +.|+.+++.... ..+.+++...++..++...... .....||||||||++||||++
T Consensus 416 i~~~~Q~~~--lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 416 MALVPQDPV--LF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred ceEEccCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 999999974 55 458889876422 3456677777777665432111 123579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|++|||||||++||+.+.+.+.+.|.++ +.|+|+|||+.+.+. .+|++++|++|+++. .|+++++.
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~-~g~~~~l~ 562 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIVA-QGTHAELI 562 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEe-eecHHHHH
Confidence 999999999999999999999999999876 579999999999886 589999999999975 46666653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=336.76 Aligned_cols=201 Identities=27% Similarity=0.430 Sum_probs=168.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.-++++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|..++ +..|
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 35899999999954 35799999999999999999999999999999999999999999998764 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|. .|+.+++... ...+.+++.+.++..++...... .....||||||||++|||||++
T Consensus 534 ~~v~q~~~--lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 534 GVVLQENV--LFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred eEEccCCe--ehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999974 554 5889988643 23456677777666655432111 1346899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+.+.+.. ||++++|++|+++. .|+.+++.
T Consensus 611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i~~-~g~~~~l~ 679 (694)
T TIGR01846 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQIAE-SGRHEELL 679 (694)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEEEE-eCCHHHHH
Confidence 99999999999999999999999999876 5799999999999975 89999999999974 57777664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=267.90 Aligned_cols=211 Identities=23% Similarity=0.338 Sum_probs=172.9
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------- 397 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 397 (568)
.|+|++.++++.| +...-++||||.+++||+++|+|.+||||||||+||++-+.|+.|.|.+..
T Consensus 4 ~PLL~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred Ccceeehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 5799999999999 667789999999999999999999999999999999999999999997531
Q ss_pred -----CeeEEEEecCCCCCCCCCCC----HHHHHHH----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH
Q psy16366 398 -----RLRIGKFDQHSGEHLFPDDT----PCEYLMK----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL 464 (568)
Q Consensus 398 -----~~~i~~~~q~~~~~l~~~~~----~~e~l~~----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l 464 (568)
+...|++.|+|.+.+-..-+ +-|-++. .++.-.+.+..||+.+.++...-...+..+|||++||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 34589999999776554333 3343332 2333345667899999987654444679999999999999
Q ss_pred HHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEE-------cC
Q psy16366 465 AELTLNNPDILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKF-------NG 533 (568)
Q Consensus 465 A~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~-------~g 533 (568)
||-|+..|.++++||||.|||..-+..|.++++ +++-++|+||||+..+.-.+++..+|.+|++++. +.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDD 242 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccccccccC
Confidence 999999999999999999999999888888876 4577999999999999999999999999999763 33
Q ss_pred CHHHHHHHHHH
Q psy16366 534 DFDDYREKLLT 544 (568)
Q Consensus 534 ~~~~~~~~~~~ 544 (568)
+-+.|.+.+..
T Consensus 243 P~hPYTQLLVS 253 (258)
T COG4107 243 PHHPYTQLLVS 253 (258)
T ss_pred CCCchHHHHHH
Confidence 34456554443
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=323.56 Aligned_cols=185 Identities=36% Similarity=0.493 Sum_probs=158.2
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 58999999999654 4799999999999999999999999999999999999999999998653 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... ...+.+++.+.++..++.+..... ....||||||||++||||++++
T Consensus 400 ~v~Q~~~--lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPF--LFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCc--ccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 9999984 665 5999998643 234667788888887775432221 2457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++.+. .||++++|
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999999876 579999999999985 58999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=325.15 Aligned_cols=174 Identities=37% Similarity=0.557 Sum_probs=149.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGK 403 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~ 403 (568)
.-++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..|+|
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 3589999999996556799999999999999999999999999999999999999999998875 347999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p 472 (568)
++|++. +|. .|+.+++... ...+.+++.++++..++.+..... .-..||||||||++||||++.+|
T Consensus 413 V~Q~~~--lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~ 489 (529)
T TIGR02868 413 FAQDAH--LFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA 489 (529)
T ss_pred EccCcc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence 999984 665 4899988653 335677888888888775432211 12469999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecch
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDE 510 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 510 (568)
+||||||||++||.++...+.+.|.+. +.|+|+|||++
T Consensus 490 ~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 490 PILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999876 57999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=326.52 Aligned_cols=200 Identities=28% Similarity=0.347 Sum_probs=167.9
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC--ccEEEECC-------CeeEEEEecC
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN--KGELRKSP-------RLRIGKFDQH 407 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~--~G~i~~~~-------~~~i~~~~q~ 407 (568)
.++|+++.| +++.+|+|+||+|++|+++||+|||||||||||++|+|.++|+ +|+|..++ ..+++|++|+
T Consensus 70 ~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 366788899 5688999999999999999999999999999999999999985 89998754 2469999998
Q ss_pred CCCCCCCCCCHHHHHHHh--c----CCCH----HHHHHHHHhCCCCCccc----cCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 408 SGEHLFPDDTPCEYLMKL--F----NLPY----EKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~--~----~~~~----~~~~~~L~~~~l~~~~~----~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
+ .+++..|+.|++... . .... +.+.++++.+||.+..+ ...+..|||||||||+||++|+.+|+
T Consensus 149 ~--~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 149 D--ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred c--ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 6 477888999987431 1 1222 23567899999976543 23467899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||||||||+|||..+...+.+.|+++ +.|||++||+++ .+.+++|++++|.+|+++ +.|+.++..+
T Consensus 227 iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv-~~G~~~~~~~ 296 (659)
T PLN03211 227 LLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL-FFGKGSDAMA 296 (659)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE-EECCHHHHHH
Confidence 99999999999999999999999864 679999999998 588899999999999986 5677776654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=293.06 Aligned_cols=182 Identities=27% Similarity=0.342 Sum_probs=146.7
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC----------
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP---------- 397 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 397 (568)
.+|+++|++.+.+++|+|+ |.+|++++|+|||||||||||++|+|+++|++|+|. ...
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999533469999995 999999999999999999999999999999999995 211
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHHhcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMKLFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
...++|++|+.. +++. ++.+.+..... .....+.++++.+|+..... .++..||||||||++|||+|+.+|
T Consensus 83 ~~~~~~i~~~~~~~~--~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVD--LIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhc--cCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCC
Confidence 113677777653 3332 44443332211 11345678899999987654 477999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+++||||||++||+.+...+.+.|.++ +.|||+||||++++..+|+++++|.+
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECC
Confidence 999999999999999999888888764 57999999999999999999999954
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=323.39 Aligned_cols=191 Identities=23% Similarity=0.252 Sum_probs=157.6
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~ 398 (568)
.-++++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358999999999542 3699999999999999999999999999999999999999999998653 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCC-----CCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP-----IRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..++|++|++. +|.. |..++. ......+++.++++.+++.......| ...||||||||++||||++.+|+
T Consensus 416 ~~i~~v~q~~~--lf~~-ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 416 DLFSAIFADFH--LFDD-LIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred hhCcEEccChh--hhhh-hhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 46899999873 5544 444442 11234566778899998876543222 35799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH-H---hcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAI-K---NYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l-~---~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
+|||||||++||+++.+.+.+.+ . ..+.|+|+|||+++.+. .||+|++|++|++++
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIVK 550 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 99999999999999999987754 2 34689999999999775 799999999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=282.32 Aligned_cols=190 Identities=28% Similarity=0.453 Sum_probs=153.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEEecCCCCCCCCCCCHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKFDQHSGEHLFPDDTPC 419 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~~q~~~~~l~~~~~~~ 419 (568)
++.+||||+|++|++++++|||||||||+||+|+|++.|++|.|+.++. .++++++-+. .++.-+..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk-~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK-LQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh-heeeeechhh
Confidence 4789999999999999999999999999999999999999999987531 1244433221 1222222222
Q ss_pred HH---HHHhcCCCHHHH----HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 420 EY---LMKLFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 420 e~---l~~~~~~~~~~~----~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
+- +...+.++..+. ..+.+.+++++.... |++.||-|||.|+.||.+|+++|+||+|||||-|||...+..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~-~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhh-hhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 22 223345555443 345567788877754 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
.+.|+++ +.||+++||++.-+..+|++|++|+.|+++ |+|++..+.+.+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv-~dg~l~~l~~~f 248 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV-FDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe-ecccHHHHHHHh
Confidence 9999876 579999999999999999999999999997 899988876654
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=321.78 Aligned_cols=194 Identities=27% Similarity=0.394 Sum_probs=166.7
Q ss_pred CeEEEEeeEEEeCC---CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------
Q psy16366 334 PVLGLHDVTFGYPG---GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~---~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 397 (568)
++|+++|+++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 47999999999953 24799999999999999999999999999999999999999999997642
Q ss_pred --CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 398 --RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 398 --~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+..++|++|++ .+++..++.+++... .+.. .+.+.++++.+|+....+ .++..|||||+||++|||+|
T Consensus 83 ~~~~~i~~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRY--HLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-CCcccCCHHHHHHHHHHHHH
Confidence 23689999987 478888888876421 1222 234567899999987655 47899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
+.+|++|||||||++||+.+++.+.++|+++ +.|+|+|||+.+++. .||++++|++|+++..
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRN 224 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEee
Confidence 9999999999999999999999999998765 579999999999886 6999999999999753
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=271.51 Aligned_cols=148 Identities=27% Similarity=0.328 Sum_probs=124.6
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe------eEEEEecCCCCCCCCCCCHHHHH
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL------RIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
.++|+|+||+|.+|++++|+|||||||||||++|. +++|++.+.... .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57899999999999999999999999999999985 368888754321 2333322
Q ss_pred HHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC--CCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy16366 423 MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNLDIESIDALAEAIKNY- 499 (568)
Q Consensus 423 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~--p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 499 (568)
.++|..++|.......++.+||||||||++|||+|+.+ |++|||||||++||+.+.+.+.+.|.++
T Consensus 68 -----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 68 -----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred -----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 35788899875423347899999999999999999999 9999999999999999999999988764
Q ss_pred --CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 500 --QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 500 --~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+.|||+||||++++. .||++++|.+|..
T Consensus 137 ~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 137 DLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred hCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 689999999999984 7999999987654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=266.65 Aligned_cols=142 Identities=43% Similarity=0.667 Sum_probs=126.9
Q ss_pred EEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEec
Q psy16366 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFDQ 406 (568)
Q Consensus 338 ~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~q 406 (568)
++++++.| .++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++.. ..++|++|
T Consensus 2 ~~~~~~~~-~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRY-GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEe-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 67999999 4568999999999999999999999999999999999999999999976542 11222222
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
||+||+||++||++++.+|+++||||||++||+
T Consensus 81 -----------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~ 113 (157)
T cd00267 81 -----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP 113 (157)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 487 ESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 487 ~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
.+...+.+.|.++ +.|+|++||+++++..+|+++++|.+|+
T Consensus 114 ~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 114 ASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999765 3599999999999999999999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=298.03 Aligned_cols=169 Identities=30% Similarity=0.400 Sum_probs=144.4
Q ss_pred EECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----
Q psy16366 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY---- 430 (568)
Q Consensus 367 ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~---- 430 (568)
|+|||||||||||++|+|+++|++|+|.++. +..++|++|++. +|+.+|+.+++... .+...
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 6899999999999999999999999998653 236999999874 78889999987532 22222
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEE
Q psy16366 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILV 506 (568)
Q Consensus 431 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~v 506 (568)
+.+.++++.++|....+. ++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.++ +.|||+|
T Consensus 79 ~~~~~~l~~~~l~~~~~~-~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADR-KPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCcchhcC-ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 346678999999876654 78999999999999999999999999999999999999999999888654 6799999
Q ss_pred ecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 507 SHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 507 sHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++++..+||++++|++|++.. .|+.+++.
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~-~g~~~~~~ 189 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQ-IGTPEEIY 189 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999999999974 56776654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=282.40 Aligned_cols=181 Identities=25% Similarity=0.411 Sum_probs=156.9
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------CeeEEEEecCCCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~i~~~~q~~~~~l~~~~~ 417 (568)
=++||++..-.++||.|++|||||||+|+|+|+.+|++|.|..+. +.+|||+||+. .+|+.+|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA--RLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc--ccccceE
Confidence 368888888789999999999999999999999999999997542 46899999997 5999999
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 418 PCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 418 ~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
+..++.... ........++...+|+.+.+.+ .|.+|||||||||+|+|||+..|++||||||.+.||..-..+++-+|
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl 171 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence 988875432 2235577888999999988776 67899999999999999999999999999999999999888888877
Q ss_pred Hh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 497 KN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 497 ~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
.+ ++..|++|||.++.+.+.++++++|++|++..+ |..++
T Consensus 172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~-g~~e~ 215 (352)
T COG4148 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKAS-GPLEE 215 (352)
T ss_pred HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEec-CcHHH
Confidence 65 467899999999999999999999999999754 54443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=289.28 Aligned_cols=215 Identities=25% Similarity=0.386 Sum_probs=176.7
Q ss_pred CCCeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-----CccEEEECC------
Q psy16366 332 PPPVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-----NKGELRKSP------ 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------ 397 (568)
..|+|.++|+++.|. +...++++|||+|++||.+||||.+|||||-..+.|+|+++. -+|.|.+++
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 357899999999993 245799999999999999999999999999999999999864 257777643
Q ss_pred ---------CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCH----HHHHHHHHhCCCCCc--cccCCCCCCCHhH
Q psy16366 398 ---------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPY----EKSRRQLGMFGLPSY--AHTIPIRDLSGGQ 458 (568)
Q Consensus 398 ---------~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~----~~~~~~L~~~~l~~~--~~~~~~~~LSgGq 458 (568)
..+|+++||+|...+.|-.|+...+.. ..+... +++.++|+.+|+... ....+|++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 247999999998888887776554432 224433 445678999999752 2234689999999
Q ss_pred HHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEE---
Q psy16366 459 KARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKF--- 531 (568)
Q Consensus 459 kqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~--- 531 (568)
||||+||.||+.+|++||.||||.+||..-+..+.++|++ ++.++++||||+..+.+++|+++||.+|++++-
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 9999999999999999999999999999999999988875 478999999999999999999999999999863
Q ss_pred ----cCCHHHHHHHHHHHH
Q psy16366 532 ----NGDFDDYREKLLTSL 546 (568)
Q Consensus 532 ----~g~~~~~~~~~~~~~ 546 (568)
..+-..|.+.++++-
T Consensus 243 ~~lF~~PqHpYTr~Ll~ae 261 (534)
T COG4172 243 ETLFAAPQHPYTRKLLAAE 261 (534)
T ss_pred HHHhhCCCChHHHHHHhcC
Confidence 234456777776654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=340.42 Aligned_cols=188 Identities=27% Similarity=0.401 Sum_probs=157.6
Q ss_pred eEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC-C-----------Cee
Q psy16366 335 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS-P-----------RLR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~-----------~~~ 400 (568)
-|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|..+ . +..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 58999999999642 369999999999999999999999999999999999999999999873 1 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc------------------------------------------------------
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF------------------------------------------------------ 426 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~------------------------------------------------------ 426 (568)
|||++|++. +|. .|+.+++....
T Consensus 462 Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 999999974 675 48888875311
Q ss_pred ----CCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 427 ----NLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 427 ----~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
..+.+++.++++.+++..... ......|||||||||+|||||+.+|+||||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 112345666777776654321 124678999999999999999999999999999999999999999
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.++|.++ +.|+|+|||+++.+ ..||+|++|++|
T Consensus 619 ~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 619 QKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 9999876 47999999999998 579999999986
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=266.20 Aligned_cols=194 Identities=26% Similarity=0.365 Sum_probs=158.7
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH---H
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---K 424 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~---~ 424 (568)
...+|+||||+|++||++||||+||||||||||+|+|.++|++|+|..+.+. +++.- ....+.+++|..|++. .
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v--~~li~-lg~Gf~pelTGreNi~l~~~ 115 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIE-LGAGFDPELTGRENIYLRGL 115 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE--ehhhh-cccCCCcccchHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999887543 32221 1234678889888763 2
Q ss_pred hcCCCHHHH----HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-
Q psy16366 425 LFNLPYEKS----RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY- 499 (568)
Q Consensus 425 ~~~~~~~~~----~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~- 499 (568)
..++..+++ .++.+.-.|..+.+ .|+.++|-||+.|+++|.|...+|++||+||-.+--|+.-++.-.+.+.++
T Consensus 116 ~~G~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 116 ILGLTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 346665544 44556666766666 499999999999999999999999999999999999998877776666655
Q ss_pred --CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHH
Q psy16366 500 --QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 546 (568)
Q Consensus 500 --~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~ 546 (568)
+.|||+||||+..+.++||++++|++|+++ +.|++++..+......
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~-~~G~~~~vi~~Y~~~~ 242 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR-MEGSPEEVIPAYEEDL 242 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEE-EcCCHHHHHHHHHHhh
Confidence 579999999999999999999999999997 5688887665554444
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.69 Aligned_cols=182 Identities=27% Similarity=0.339 Sum_probs=150.2
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC-----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP----------- 397 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~----------- 397 (568)
+++++|+++..+|++++ .+++|+++||+||||||||||||+|+|+++|+.|+|. +.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 48999943357999999 8999999999999999999999999999999999985 321
Q ss_pred --CeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 398 --RLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 398 --~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..++++.+|.... .++. .++.+++... .....+.++++.++|....+ +++.+|||||||||+||++|+.+|+
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~--~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV--DERGKLDEVVERLGLENILD-RDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred ccCcceeecccchhhhhhhhc-chHHHHHHhh--hHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1335665654321 1222 3677766421 12345778999999986554 5889999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|.++
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999877 789999999999999999999999864
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=288.73 Aligned_cols=204 Identities=32% Similarity=0.464 Sum_probs=164.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..|.++++++.=|+. +++++++||++.+|+.++||||+|||||||.|+|.|..+|++|.|+.+. ...|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 479999999977654 4899999999999999999999999999999999999999999998653 3579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCC-------CCCccccC---CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFG-------LPSYAHTI---PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~-------l~~~~~~~---~~~~LSgGqkqRv~lA~al~~ 470 (568)
||+||+- ++|+. |+.|++.++. ..+.+.+-+....-| |+.-.++. --..||||||||++|||||..
T Consensus 413 GYLPQdV--eLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 413 GYLPQDV--ELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred CcCcccc--eecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999986 47766 7889888765 344444333222222 22111110 125799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
+|.+++||||-++||.+...+|.++|.. .++|+|+|||....+. .+|+|.+|++|++..| |+.++...++
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F-G~r~eVLa~~ 562 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF-GPREEVLAKV 562 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc-CCHHHHHHHh
Confidence 9999999999999999999999999865 4789999999999986 5799999999999765 6665554443
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=259.38 Aligned_cols=176 Identities=29% Similarity=0.412 Sum_probs=149.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC----------eeEEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----------LRIGKF 404 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i~~~ 404 (568)
++..+|++..- +..++|.++||++.+||.+-|.||||||||||||+|+|+++|++|+|+++.. ..+-|+
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 46678888887 7889999999999999999999999999999999999999999999998631 112233
Q ss_pred ecCCCCCCCCCCCHHHHHHHhc---C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 405 DQHSGEHLFPDDTPCEYLMKLF---N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 405 ~q~~~~~l~~~~~~~e~l~~~~---~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
-.++ .+-.++|+.|++..+. + .+...+.+.+..+||.+..+. |+++||-|||+||+|||..++.++++|||||
T Consensus 81 GH~~--giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dl-p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 GHQP--GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDL-PVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hccc--cccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccccccc-chhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 2222 4678899999886542 3 346778899999999998875 9999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY---QGGVILVSHDERLIR 514 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~ 514 (568)
|++||.+....|...+... ++.||++||..-.+.
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 9999999999999998754 678999999987664
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=296.64 Aligned_cols=200 Identities=29% Similarity=0.487 Sum_probs=162.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--eeEEEEecCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--LRIGKFDQHSGEHL 412 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~l 412 (568)
-|.+.+++..| |++.+|++-++++..|.++||+|+||+|||||||+|+. |.|..-+. ...|..-.+....+
T Consensus 80 Di~~~~fdLa~-G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l 152 (582)
T KOG0062|consen 80 DIHIDNFDLAY-GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVL 152 (582)
T ss_pred ceeeeeeeeee-cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhh
Confidence 47788999999 78999999999999999999999999999999999987 33322111 01121111111223
Q ss_pred CCCCCHHHHHHHh----cCCCHHHHHH-HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 413 FPDDTPCEYLMKL----FNLPYEKSRR-QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 413 ~~~~~~~e~l~~~----~~~~~~~~~~-~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++...+++..- .....+++.. +|.-+||+.....+|+.+||||-|.|++|||||..+|||||||||||+||..
T Consensus 153 ~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 153 ESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred hccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 4444455555432 1223344444 8999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++.+|.+.|..++.|+|+||||..|+..+|..|+.+++-++..|.|+|+.+.+.
T Consensus 233 av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 233 AVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=254.57 Aligned_cols=201 Identities=24% Similarity=0.286 Sum_probs=169.3
Q ss_pred CeEEEEeeEEEeCC--------CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------
Q psy16366 334 PVLGLHDVTFGYPG--------GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--------~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------- 397 (568)
++|+++|+++.|.. ...+++.|||+++.|+.+||+|.||||||||.|+|+|.++|++|+|..+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 56889999988732 12478999999999999999999999999999999999999999998764
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..+|-++||+|+..+.|.+.+-..+-. ...++ .+++.+.|..+||-++-....+..||-||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 346899999999888887766554422 12232 2446677999999765556688999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
||+.+|+|+|.||..++||...+..+.++..+ .+.+.|+|+.++-.+..++|.|+||+.|+++++..+
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 99999999999999999999998888877643 477999999999999999999999999999987543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=330.54 Aligned_cols=197 Identities=23% Similarity=0.309 Sum_probs=162.3
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.++++|++|.|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. .|+|++|++. ++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--IQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--cc
Confidence 69999999999533 5799999999999999999999999999999999999999999998875 6999999974 54
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCCC-----------ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----------YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~-----------~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
..|+.+++......+.+...+.++..++.. ... ....+|||||||||+||||++.+|+++||||||+
T Consensus 712 -~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 712 -NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred -CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 468999886432334444444443333221 112 2457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHh-----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKN-----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~-----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||+.+...+.+.+.+ .+.|+|+|||+.+++.. ||+|++|++|++.. .|+++++.
T Consensus 790 aLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~-~g~~~~l~ 849 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISE-MGSYQELL 849 (1522)
T ss_pred ccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEe-eCCHHHHH
Confidence 9999999999988853 24799999999999976 89999999999974 57777764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=259.20 Aligned_cols=194 Identities=27% Similarity=0.323 Sum_probs=160.3
Q ss_pred EEEEeeEEEeC----CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 336 LGLHDVTFGYP----GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 336 l~~~~v~~~y~----~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
+.+.|+++.|. ..+++|+++|++|..|+++.|+|.||||||||+++|+|.+.|++|+|.... ...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 34556665552 235799999999999999999999999999999999999999999998653 234
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc------CCCH-------HHHHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF------NLPY-------EKSRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~------~~~~-------~~~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
++.+||+|....++.+|+.|++.-.. ++.. +..+..+..+ ||+..+.. ++.-|||||||-|+|+
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~-~iglLSGGQRQalsL~ 160 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSD-RIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcC-hhhhccchHHHHHHHH
Confidence 77899999988999999999875321 2221 2234455554 45666654 7999999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHH----HHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEA----IKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~----l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
.|.+..|+||+|||-|++|||.+...+++. +.+.+.|.+||||+++-+-.|.+|.++|++|+|+.
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999999999999998777664 45668899999999999999999999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=329.34 Aligned_cols=200 Identities=24% Similarity=0.355 Sum_probs=165.1
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
..++++|++|+|++ ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++|.+.. .+..|+|++|+|.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~-- 689 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW-- 689 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc--
Confidence 36899999999964 357999999999999999999999999999999999999999987643 3557999999984
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
+|. .|+.|++......+.+++.++++..++..+.... .-..||||||||++||||+.++|+||||||||
T Consensus 690 Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEpt 768 (1495)
T PLN03232 690 IFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768 (1495)
T ss_pred ccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 554 5999998754445667777777777764332211 12469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH-HHh--cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 482 NNLDIESIDALAEA-IKN--YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 482 ~~LD~~~~~~l~~~-l~~--~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++||..+...+.+. +.. .+.|+|+|||++..+. .||+|++|++|++++ .|+++++.
T Consensus 769 SaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~-~Gt~~eL~ 827 (1495)
T PLN03232 769 SALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIKE-EGTFAELS 827 (1495)
T ss_pred cccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEEE-ecCHHHHH
Confidence 99999998877654 544 2579999999999876 589999999999974 68887764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=303.81 Aligned_cols=190 Identities=25% Similarity=0.293 Sum_probs=160.4
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC--------eeEEEEecCCCCCCCCC
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR--------LRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~--------~~i~~~~q~~~~~l~~~ 415 (568)
+.+++|+|+|++|++||+++|+|||||||||||++|+|..+|. +|+|..++. ..+||++|++ .+++.
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~--~~~~~ 113 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD--LFIPT 113 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc--ccCcc
Confidence 3567999999999999999999999999999999999999885 799987653 3689999986 47888
Q ss_pred CCHHHHHHHh--cC----CCH----HHHHHHHHhCCCCCccccCCCC------CCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 416 DTPCEYLMKL--FN----LPY----EKSRRQLGMFGLPSYAHTIPIR------DLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 416 ~~~~e~l~~~--~~----~~~----~~~~~~L~~~~l~~~~~~~~~~------~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.|+.|++... .. ... ..+.++++.+||.+..++ +++ .|||||||||+||++|+.+|+||+|||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t-~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT-RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcC-ccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 9999987532 11 121 246778999999876654 454 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
||+|||..+...+.+.|++. +.|||+++|+++ .+.+.+|++++|.+|+++ +.|+.++..+
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v-~~G~~~~~~~ 256 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVA-YLGSPDQAVP 256 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEE-EECCHHHHHH
Confidence 99999999999999998765 579999999985 788899999999999997 5677776543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=327.43 Aligned_cols=200 Identities=23% Similarity=0.370 Sum_probs=166.0
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEECCCeeEEEEecCCCC
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~~~i~~~~q~~~~ 410 (568)
+.++++|++|+|+. ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++ |+|.. +..|+|++|+|.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--~~~Iayv~Q~p~- 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--RGTVAYVPQVSW- 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--cCeEEEEcCccc-
Confidence 46899999999953 3579999999999999999999999999999999999999999 89975 457999999984
Q ss_pred CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 411 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+|. .|+.+++......+.+++.++++..+|..+.... .-..|||||||||+||||+.++|+|||||||
T Consensus 690 -Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEp 767 (1622)
T PLN03130 690 -IFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDP 767 (1622)
T ss_pred -cCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 554 5999998754445667777777777765432211 2347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHH-HHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 481 TNNLDIESIDALA-EAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 481 t~~LD~~~~~~l~-~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++||+.+...+. +.+... +.|+|+|||++..+. .+|+|++|++|++.+ .|+++++.+
T Consensus 768 tSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e-~Gt~~eL~~ 828 (1622)
T PLN03130 768 LSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIKE-EGTYEELSN 828 (1622)
T ss_pred ccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEEE-eCCHHHHHh
Confidence 9999999887765 455543 579999999999886 489999999999974 688887653
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=251.23 Aligned_cols=202 Identities=29% Similarity=0.404 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECC------------C
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSP------------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~------------~ 398 (568)
.+|+++|++... .+ +.+|++|||+|++||+.+|+||||||||||.++|+|.- .+++|+|..+. +
T Consensus 2 ~~L~I~dLhv~v-~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEV-EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEe-cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 378999999999 55 59999999999999999999999999999999999974 78999998653 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhcCC----------CHHHHHHHHHhCCCCCccccCCC-CCCCHhHHHHHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----------PYEKSRRQLGMFGLPSYAHTIPI-RDLSGGQKARVALAEL 467 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~----------~~~~~~~~L~~~~l~~~~~~~~~-~~LSgGqkqRv~lA~a 467 (568)
..|...+|.|. -++..+..+++....+. ....+++.++.++++.....+.+ ..+|||||+|.-|+.+
T Consensus 81 ~GifLafQ~P~--ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~ 158 (251)
T COG0396 81 AGIFLAFQYPV--EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQL 158 (251)
T ss_pred cCCEEeecCCc--cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHH
Confidence 34667789885 45777888888643321 13456778999999874333343 5799999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhC-ceEEEEECCeEEEEcCCHHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETD-CELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~-~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
++.+|++.|||||-||||+.+.+.+.+.++.+ +.++++|||..+++..+. |++.+|-+|+|+. .|++ ++.+
T Consensus 159 ~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~-sG~~-el~~ 233 (251)
T COG0396 159 LLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK-SGDP-ELAE 233 (251)
T ss_pred HhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEe-cCCH-HHHH
Confidence 99999999999999999999999998888766 578999999999998775 8999999999974 6776 4433
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=241.50 Aligned_cols=184 Identities=32% Similarity=0.447 Sum_probs=153.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC---------CeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP---------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~---------~~~i~ 402 (568)
++.++||+.+. ++..+|-|+||+|.+||++.|+||+||||||||..+.|.+.+. +|++..+. ++.+|
T Consensus 2 ~l~l~nvsl~l-~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRL-PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecC-CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 57899999998 5789999999999999999999999999999999999999875 68887543 46799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-----C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-----N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-----~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl 476 (568)
++||++ .+|+..++.+++.... + .....+...|++.||++..+. .+.+||||||.||+|-|+|+..|+.|+
T Consensus 81 iLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 81 ILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred eeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceee
Confidence 999997 4899999988764321 1 112345678999999998876 568999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHH----HHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 477 LDEPTNNLDIESIDALAEA----IKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~----l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||||+|.||..-++.+.+. ++..+..+|+||||...+. ...+++.|
T Consensus 158 LDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred eCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999776655554 4566778999999999887 56666554
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=283.66 Aligned_cols=199 Identities=29% Similarity=0.484 Sum_probs=159.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
-+.++|+++.| .+..+++|+.|++.+|++|||+|+|||||||+|++|.|-..|..-.+.. ..+.++. ...
T Consensus 75 dvk~~sls~s~-~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~------y~ls~e~---~ps 144 (614)
T KOG0927|consen 75 DVKIESLSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF------YLLSREI---EPS 144 (614)
T ss_pred cceeeeeeecc-CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch------hhhcccC---CCc
Confidence 48899999999 6789999999999999999999999999999999999999996544321 1111111 011
Q ss_pred CCCHHH--------------HHHH--------------------hc--CC--CHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 415 DDTPCE--------------YLMK--------------------LF--NL--PYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 415 ~~~~~e--------------~l~~--------------------~~--~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
..+..+ ++.. .. +. ...++..+|..+|+......+....|||
T Consensus 145 ~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 145 EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 111111 1100 00 00 0123345677888887777778899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc-eEEEEecchHHHHhhCceEEEEECCeEEEEcCCH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG-GVILVSHDERLIRETDCELWALEKKNIRKFNGDF 535 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~ 535 (568)
|++.|++|||+|..+|++|||||||||||++++.+|.+.|.++.. ++|++||+.+|+..+|+.|+.+++++.+.|.|+|
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gny 304 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNY 304 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCH
Confidence 999999999999999999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy16366 536 DDYREKLL 543 (568)
Q Consensus 536 ~~~~~~~~ 543 (568)
+.|.....
T Consensus 305 dqy~~tr~ 312 (614)
T KOG0927|consen 305 DQYVKTRS 312 (614)
T ss_pred HHHhhHHH
Confidence 99965443
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=323.40 Aligned_cols=184 Identities=25% Similarity=0.380 Sum_probs=148.5
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCC
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~ 428 (568)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|..++ .|+|++|++. +++ .|+.+++......
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~~-~Ti~eNI~~g~~~ 513 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IMP-GTIKDNIIFGLSY 513 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cCC-ccHHHHHHhcccc
Confidence 4689999999999999999999999999999999999999999998765 6999999974 565 4999987632222
Q ss_pred CHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-HH
Q psy16366 429 PYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA-IK 497 (568)
Q Consensus 429 ~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~ 497 (568)
......+++..++|.... -..+..+|||||||||+||||++.+|++|||||||++||+.+...+.+. +.
T Consensus 514 ~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~ 593 (1490)
T TIGR01271 514 DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLC 593 (1490)
T ss_pred chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 322333333333322111 1124578999999999999999999999999999999999999999874 44
Q ss_pred hc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 498 NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 498 ~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+ +.|||+|||+++++.. ||++++|++|++. ..|+++++.
T Consensus 594 ~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~l~ 635 (1490)
T TIGR01271 594 KLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSELQ 635 (1490)
T ss_pred HHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHHHH
Confidence 43 5799999999999875 9999999999986 467777664
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=260.50 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=128.8
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHH-HHHhc--------------------CcCCCccEEEECCCeeEEEEe
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL-NLLKG--------------------ELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl-k~l~G--------------------~~~p~~G~i~~~~~~~i~~~~ 405 (568)
.+..+|++|||+|++||++||+||||||||||+ .+|.. ...|..+.+ .....++..
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 82 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSI---EGLSPAIAI 82 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccc---cCCCceEEe
Confidence 345799999999999999999999999999996 33321 111111111 011234444
Q ss_pred cCCCCCCCCCCCHHH------HHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEE
Q psy16366 406 QHSGEHLFPDDTPCE------YLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILI 476 (568)
Q Consensus 406 q~~~~~l~~~~~~~e------~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLl 476 (568)
|++...+.+..++.. ++...+. .......+.|..+++.......++.+|||||+|||+||++|+.+| ++||
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~lll 162 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYV 162 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 544333334334221 1111111 112233568999999764334578999999999999999999998 5999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE------ECCeEEE
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL------EKKNIRK 530 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l------~~g~i~~ 530 (568)
|||||++||+.+...+.+.|.++ +.|||+||||++++. +||++++| ++|+|+.
T Consensus 163 lDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d~i~~l~~~~~~~~G~iv~ 224 (226)
T cd03270 163 LDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AADHVIDIGPGAGVHGGEIVA 224 (226)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCCEEEEeCCCccccCCEEEe
Confidence 99999999999999998888654 579999999999984 89999999 8888874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=290.77 Aligned_cols=105 Identities=29% Similarity=0.371 Sum_probs=90.3
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEE
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILV 506 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~v 506 (568)
..+.|..+||......+++.+|||||+||++||++|+.+| +++||||||+|||+..+..|.+.|+++ +.|||+|
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3467888999754334578999999999999999999999 999999999999999999999988765 5799999
Q ss_pred ecchHHHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 507 SHDERLIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 507 sHd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
|||++++. .||+++.| ++|+++ +.|+.+++.
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~ 926 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVA 926 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHH
Confidence 99999995 69999999 688886 567777654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=302.72 Aligned_cols=104 Identities=24% Similarity=0.369 Sum_probs=89.2
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc---cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL---NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~---~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
++|..+||......+++.+|||||+|||+||++|+ .+|++|||||||+|||+.++..|.++|.++ +.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 47888999765234578999999999999999997 699999999999999999999999988765 579999999
Q ss_pred chHHHHhhCceEEEEE------CCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALE------KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~------~g~i~~~~g~~~~~~~ 540 (568)
|++++ .+||++++|. +|+++ ..|+++++..
T Consensus 871 dl~~i-~~aDrVi~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 871 NMHVV-KVADYVLELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred CHHHH-HhCCEEEEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 99999 7999999996 56675 5688877653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=312.86 Aligned_cols=185 Identities=25% Similarity=0.331 Sum_probs=148.9
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|... .+|+|++|++. ++ ..|+.+++.....
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l~-~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--IM-NATVRGNILFFDE 746 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--cC-CCcHHHHHHcCCh
Confidence 4579999999999999999999999999999999999999999999864 57999999974 55 4689998764222
Q ss_pred CCHHHHHHH---------HHhC--CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHH-
Q psy16366 428 LPYEKSRRQ---------LGMF--GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA- 495 (568)
Q Consensus 428 ~~~~~~~~~---------L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~- 495 (568)
...+...+. +..+ |+..... .+..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~ 825 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEEC 825 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 222222222 3333 4443333 35789999999999999999999999999999999999988777653
Q ss_pred HH-hc-CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 496 IK-NY-QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 496 l~-~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+. .. +.|+|+||||++++. .||++++|++|++. ..|+++++.+
T Consensus 826 ~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~-~~G~~~~l~~ 870 (1560)
T PTZ00243 826 FLGALAGKTRVLATHQVHVVP-RADYVVALGDGRVE-FSGSSADFMR 870 (1560)
T ss_pred HHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEEE-EecCHHHHHh
Confidence 22 22 579999999999995 69999999999996 5688888653
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=238.30 Aligned_cols=189 Identities=26% Similarity=0.412 Sum_probs=157.6
Q ss_pred eEEEEeeEEEeC----CC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 335 VLGLHDVTFGYP----GG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~----~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
.|.++|++++|. ++ -++|+|+||+|+.||++++-||+|+|||||||+|.|-+.|++|+|...+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 477889988883 22 2689999999999999999999999999999999999999999997531
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv 462 (568)
+..|||++|... ..+.-+..+..+. ..+.+. ..++.+|.+++++..++..++.++||||||||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 346899988542 3444444443332 224443 45677899999999888889999999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
-|||.++.+-+||||||||+.||..++..+.++|.+. +.++|=|=||.+.=..+|||++-|..
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999765 56799999999999999999987753
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=309.57 Aligned_cols=190 Identities=20% Similarity=0.188 Sum_probs=157.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc----CCCccEEEECC----------CeeEEEEecCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL----TPNKGELRKSP----------RLRIGKFDQHSGEHLF 413 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~----------~~~i~~~~q~~~~~l~ 413 (568)
.+++|+|||+.|++|++++|+||||||||||||+|+|.. +|++|+|.+++ +..++|++|+. .++
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d--~~~ 150 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETD--VHF 150 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccc--ccC
Confidence 357999999999999999999999999999999999986 57899998753 23489999985 477
Q ss_pred CCCCHHHHHHHh---c-------CCCHH----H-HHHHHHhCCCCCccccC----CCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 414 PDDTPCEYLMKL---F-------NLPYE----K-SRRQLGMFGLPSYAHTI----PIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 414 ~~~~~~e~l~~~---~-------~~~~~----~-~~~~L~~~~l~~~~~~~----~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
+.+|+.|++... . +.+.+ . ...+|+.+||.+..++. .++.|||||||||+||++|+.+|+|
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 889999977431 1 12222 1 24578999998765432 3578999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecch-HHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+|||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.+++|++++|.+|+++ +.|+.++..+
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv-~~G~~~~~~~ 300 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQI-YFGPADKAKQ 300 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEE-EECCHHHHHH
Confidence 9999999999999999999998764 56899999996 7888999999999999987 5677766544
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=269.16 Aligned_cols=200 Identities=30% Similarity=0.399 Sum_probs=159.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|.|..++++|+||||++.+|+.+|||||+|+||||++|+|......++|.|..++ |..||
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 3588999999998889999999999999999999999999999999999999999999998764 45799
Q ss_pred EEecCCCCCCCCCCCHHHHHHH-hcCCCHHHHHHHHH-------hCCCCCcccc---CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMK-LFNLPYEKSRRQLG-------MFGLPSYAHT---IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~~~~~L~-------~~~l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.+||+.. +|.+ |+..++.. ..+...+++.++.. .+++++-... .+--.|||||||||||||+++..
T Consensus 616 VVPQDtv--LFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~ 692 (790)
T KOG0056|consen 616 VVPQDTV--LFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA 692 (790)
T ss_pred cccCcce--eecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence 9999974 6665 44444321 11223333322222 2334322111 12347999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|.+++|||.||+||..+.+++..+|.+. +.|-|+|.|.+..+-. +|.|+++.+|.|++- |.-+++
T Consensus 693 P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~IvEr-G~HeeL 759 (790)
T KOG0056|consen 693 PSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIVER-GRHEEL 759 (790)
T ss_pred CcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEeec-CcHHHH
Confidence 9999999999999999999999999886 5799999999999964 799999999999863 554443
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-29 Score=283.84 Aligned_cols=102 Identities=27% Similarity=0.395 Sum_probs=87.2
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc---CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEe
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVS 507 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vs 507 (568)
.+.|..+||......+++.+|||||+|||+||++|+. +|+++||||||+|||+..+..|.+.|.++ +.|||+||
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~ 888 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIE 888 (924)
T ss_pred HHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567888997533345789999999999999999997 59999999999999999999999998765 57999999
Q ss_pred cchHHHHhhCceEEEE------ECCeEEEEcCCHHH
Q psy16366 508 HDERLIRETDCELWAL------EKKNIRKFNGDFDD 537 (568)
Q Consensus 508 Hd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~ 537 (568)
||++++. .||++++| .+|+++ +.|+.++
T Consensus 889 H~~~~i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~~ 922 (924)
T TIGR00630 889 HNLDVIK-TADYIIDLGPEGGDGGGTIV-ASGTPEE 922 (924)
T ss_pred CCHHHHH-hCCEEEEecCCccCCCCEEE-EeCCHHH
Confidence 9999995 69999999 688887 5577654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=309.27 Aligned_cols=190 Identities=24% Similarity=0.273 Sum_probs=158.3
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECC--------CeeEEEEecCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSP--------RLRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~--------~~~i~~~~q~~~~~l~~~~ 416 (568)
.+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.+++ +..++|++|+. .+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d--~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND--VHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccc--cCCCcC
Confidence 467999999999999999999999999999999999999998 99998753 35699999985 477889
Q ss_pred CHHHHHHHh---cC----------CCH-H---------------------------HHHHHHHhCCCCCccc----cCCC
Q psy16366 417 TPCEYLMKL---FN----------LPY-E---------------------------KSRRQLGMFGLPSYAH----TIPI 451 (568)
Q Consensus 417 ~~~e~l~~~---~~----------~~~-~---------------------------~~~~~L~~~~l~~~~~----~~~~ 451 (568)
|+.|++... .+ ... + .+..+|+.+||.+..+ ...+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 999977421 11 000 0 1245788999976442 2356
Q ss_pred CCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecch-HHHHhhCceEEEEECC
Q psy16366 452 RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDE-RLIRETDCELWALEKK 526 (568)
Q Consensus 452 ~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~i~~~~~~i~~l~~g 526 (568)
+.|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|+++ +.|||+++|+. ..+..++|++++|.+|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 899999999999999999999999999999999999999999998765 56999999996 6888999999999999
Q ss_pred eEEEEcCCHHHHHH
Q psy16366 527 NIRKFNGDFDDYRE 540 (568)
Q Consensus 527 ~i~~~~g~~~~~~~ 540 (568)
+++ +.|+.++..+
T Consensus 415 ~iv-y~G~~~~~~~ 427 (1470)
T PLN03140 415 QIV-YQGPRDHILE 427 (1470)
T ss_pred eEE-EeCCHHHHHH
Confidence 997 5677766543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-29 Score=241.38 Aligned_cols=154 Identities=22% Similarity=0.316 Sum_probs=123.3
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc---------EEEEC--------CCeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG---------ELRKS--------PRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G---------~i~~~--------~~~~i~~~~q~~~~~l~~~ 415 (568)
++++|++.+| +++|+||||||||||+++|+|++.|..| ++... ...++++++|++..+ +..
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~-~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR-YSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc-eeE
Confidence 6789999999 9999999999999999999999877643 23221 135799999998643 110
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~ 491 (568)
...+.+.++++. .+.. ..++.+||||||||++||++++ .+|++|||||||++||+.+...
T Consensus 92 ------------~~~~~~~~~l~~---~~~~-~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~ 155 (197)
T cd03278 92 ------------ISQGDVSEIIEA---PGKK-VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVER 155 (197)
T ss_pred ------------EehhhHHHHHhC---CCcc-ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHH
Confidence 013345566666 3333 3478999999999999999986 4679999999999999999999
Q ss_pred HHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 492 LAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 492 l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+.+.|.++ +.|||+||||++++ .+||+++.|..
T Consensus 156 l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 156 FARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 99999876 46899999999987 47999998864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=256.43 Aligned_cols=200 Identities=29% Similarity=0.408 Sum_probs=161.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..+.+.+|+|.|.+.+++|+++||++.+|+.++|+||+|+||||++++|...+.+++|.|..++ +.-||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 3578999999998788999999999999999999999999999999999999999999998754 35699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~~ 471 (568)
.+||+.. ||.+ |...+.... .....+++...++.+.+....... .--.|||||||||+|||+++.+
T Consensus 341 ~VPQDtv--LFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 341 IVPQDTV--LFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred cCcccce--ehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 9999874 6654 554444321 223445555544444333211111 1247999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||+|||.||+||..+.+++...|++. +.|-++|.|.++.+-. +|+|+++++|+|++ .|+-+++
T Consensus 418 p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~e-rg~h~~l 484 (497)
T COG5265 418 PPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIVE-RGTHEEL 484 (497)
T ss_pred CCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEEe-cCcHHHH
Confidence 9999999999999999999999999875 5799999999999975 79999999999986 4665544
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=287.73 Aligned_cols=204 Identities=27% Similarity=0.412 Sum_probs=176.3
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------CeeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 401 (568)
..+.++++++.|+....+++++||.|++||+.|++|+|||||||++++|+|..+|++|++.... +..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4678999999994332399999999999999999999999999999999999999999987632 3459
Q ss_pred EEEecCCCCCCCCCCCHHHHHH---HhcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~---~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
||+||+. .+++.+|..|.+. +..|++. +.+...|+.++|.++... +++.+|||+|+|+++|.|++.+|++
T Consensus 643 GyCPQ~d--~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~-~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 643 GYCPQFD--ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANK-QVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred ccCCchh--hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhcc-chhhCCCcchhhHHHHHHHhcCCCE
Confidence 9999984 5889999998764 3345553 345678999999988875 7999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
++|||||+|+||.+++.+.+++.+. +++||++||.+++++..|+|+.+|-+|++..+ |+.+.++..
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ci-Gs~q~LKsr 788 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCI-GSPQELKSR 788 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEe-cChHHHHhh
Confidence 9999999999999999999999876 23999999999999999999999999999754 676666643
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=280.60 Aligned_cols=203 Identities=24% Similarity=0.375 Sum_probs=172.0
Q ss_pred CCCCeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 331 LPPPVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
...+.++++|.+|+.+. ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|.++..+|+|..++. ++|++|.|
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p 591 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP 591 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc
Confidence 34567999999999843 335899999999999999999999999999999999999999999988765 89999987
Q ss_pred CCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 409 GEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
...+-|+.|++......+.+..++.++...|..+....| --+||||||||++||||+.++++|+|||
T Consensus 592 ---WI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 592 ---WIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred ---HhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 334568999987666667788888888888876554433 2489999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHH-HHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 479 EPTNNLDIESIDALAE-AIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~-~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
-|++++|...-..|.+ .|..+ ++|+|+|||.+.++.. +|.|++|+||+|. ..|+|+++.+
T Consensus 669 DplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I~-~~Gty~el~~ 731 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKIV-ESGTYEELLK 731 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeEe-cccCHHHHHh
Confidence 9999999988666655 44443 5799999999999975 7999999999997 4799998764
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=264.69 Aligned_cols=202 Identities=30% Similarity=0.373 Sum_probs=167.7
Q ss_pred CeEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC---CccEEEECC--------C
Q psy16366 334 PVLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP---NKGELRKSP--------R 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~ 398 (568)
.-+.+++++...++. +.+|++||..+++|+++||+||+||||||||++|+|...+ .+|+|..++ +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 346788888877443 6799999999999999999999999999999999999875 789998876 3
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh--cCC----C----HHHHHHHHHhCCCCCccccCCCC-----CCCHhHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----P----YEKSRRQLGMFGLPSYAHTIPIR-----DLSGGQKARVA 463 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~--~~~----~----~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGqkqRv~ 463 (568)
..+||+.|+. .+++.+|+.|.+... ..+ + .+.+++++..+||....+. .++ .+|||||+||+
T Consensus 104 ~~s~yV~QdD--~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t-~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDD--VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADT-LIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccc--cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccc-eecCCCCCccccchhhHHH
Confidence 4689999985 589999999987532 111 2 2456788999999965554 554 59999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH-HHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER-LIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||.-|+.+|.||+|||||+|||..+...+.+.|+++ +.|||++=|.+. .+...-|++++|.+|+++ |.|+.++..
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~v-y~G~~~~~~ 259 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVV-YSGSPRELL 259 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEE-EecCHHHHH
Confidence 999999999999999999999999999999988765 679999999974 466677999999999886 667665443
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=223.95 Aligned_cols=123 Identities=42% Similarity=0.607 Sum_probs=104.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
|+||||+|++|++++|+|+||||||||+++|+|..+|++|.|.++. +..++|++|++ .++...++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP--QLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH--CHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 6899999999999999999999999999999999999999998653 35699999985 4777888877
Q ss_pred HHHHhcCCCHHHHHHHHHhCCCCCcccc---CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHT---IPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+. ....+..++..+++...... .++..||+||||||+||+||+.+|++||||||||
T Consensus 79 ~~------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 NE------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 71 23456777888887653332 2339999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=235.87 Aligned_cols=180 Identities=22% Similarity=0.231 Sum_probs=131.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEe-CCCEEEEECCCCChHHHHHHHHhcCc-CCCccEEEE----------CCCeeEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLD-MESRVALVGPNGIGKSTFLNLLKGEL-TPNKGELRK----------SPRLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~-~Ge~~~ivG~NGsGKSTLlk~l~G~~-~p~~G~i~~----------~~~~~i~ 402 (568)
-|+++|+. +|. +. .+++|... +|++++|+|||||||||||++|++.+ -+..+.... .....|+
T Consensus 5 ~i~l~nf~-~y~-~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFR-EE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcC-Cc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 36788888 662 22 56677644 58999999999999999999999643 333333221 1234688
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHH--HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----------
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ--LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN---------- 470 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~--L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~---------- 470 (568)
+.+|++...+. +.. ..+.+.+...+. +...++..... .++..|||||+||++||++++.
T Consensus 80 ~~f~~~~~~~~----~~r----~~gl~~~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~ 150 (213)
T cd03279 80 FTFQLGGKKYR----VER----SRGLDYDQFTRIVLLPQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGA 150 (213)
T ss_pred EEEEECCeEEE----EEE----ecCCCHHHHHHhhhhhhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 88887642211 101 114444443332 33344544444 4779999999999999999985
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
+|++|||||||++||+.+...+.++|.++ +.|||+||||++++..+|++++++++|.+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 57899999999999999999998888766 56999999999999999999999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=231.29 Aligned_cols=180 Identities=22% Similarity=0.252 Sum_probs=127.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh--------cC--cCCCccEEEEC--CCeeEEEEecCCCCC------
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK--------GE--LTPNKGELRKS--PRLRIGKFDQHSGEH------ 411 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~--------G~--~~p~~G~i~~~--~~~~i~~~~q~~~~~------ 411 (568)
.-|+|||++|+.|..++|+|++|||||||++.+. +. ..|..++.... .-..+-++.|.|...
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3589999999999999999999999999998662 11 11322221110 111233444443210
Q ss_pred --------------------------------------CCCCCCHHHHHHHhcCC-CHHHHHHHHHhCCCCCccccCCCC
Q psy16366 412 --------------------------------------LFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIR 452 (568)
Q Consensus 412 --------------------------------------l~~~~~~~e~l~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~ 452 (568)
....+|+.|.+...... ....+.++|..+||......+++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 11223333332211111 113345678899998633345789
Q ss_pred CCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEE---
Q psy16366 453 DLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWAL--- 523 (568)
Q Consensus 453 ~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l--- 523 (568)
+|||||+||++||++|+.+ |+++||||||+|||+..+..+.+.|.++ +.|||+||||++++. .||++++|
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~aD~ii~Lgp~ 247 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CADWIIDLGPE 247 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEecCC
Confidence 9999999999999999996 7999999999999999999999988765 679999999999996 69999999
Q ss_pred ---ECCeEEE
Q psy16366 524 ---EKKNIRK 530 (568)
Q Consensus 524 ---~~g~i~~ 530 (568)
.+|+++.
T Consensus 248 ~g~~~G~iv~ 257 (261)
T cd03271 248 GGDGGGQVVA 257 (261)
T ss_pred cCCCCCEEEE
Confidence 7888864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.5e-26 Score=245.23 Aligned_cols=183 Identities=28% Similarity=0.357 Sum_probs=157.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
...++++|++..-|++.+++++.||+|++|+.+.|.||||||||||+|+|+|+-|--+|.|.......+-|+||.|.
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY--- 466 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY--- 466 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC---
Confidence 46899999999998888999999999999999999999999999999999999999999998877777999999984
Q ss_pred CCCCCHHHHHHHhc---CCCHHHHHHHHHhCCCCCccccC-----CCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 413 FPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHTI-----PIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 413 ~~~~~~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~~-----~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
++.-|..+.+.... ..+.+++.+.|..+||.+...+. =-..||+||||||++||+|+++|++++|||-|++|
T Consensus 467 ~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsAL 546 (604)
T COG4178 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546 (604)
T ss_pred CCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhcc
Confidence 45558888765322 25678888999999987533211 01479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh--cCceEEEEecchHHHHhhCc
Q psy16366 485 DIESIDALAEAIKN--YQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 485 D~~~~~~l~~~l~~--~~~tvi~vsHd~~~i~~~~~ 518 (568)
|+++...+.+++++ .+.|||-|+|...+..-...
T Consensus 547 De~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 547 DEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred ChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 99999999999998 67899999999988765443
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-27 Score=237.90 Aligned_cols=201 Identities=24% Similarity=0.465 Sum_probs=160.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC---cCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE---LTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~---~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
-|.++|.+.+- .++.+|.|.|+.|-.|.++++|||||-||||||+.|+.- ++| ...+-++-|.....
T Consensus 264 DIKiEnF~ISA-~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp---------nIDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISA-QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP---------NIDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeec-ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC---------CCceEeeeeeeeec
Confidence 37889999887 678899999999999999999999999999999999763 233 22334444432100
Q ss_pred ----------------------------C-CCCCCHHHHHHH------hcCC--CHHHHHHHHHhCCCCCccccCCCCCC
Q psy16366 412 ----------------------------L-FPDDTPCEYLMK------LFNL--PYEKSRRQLGMFGLPSYAHTIPIRDL 454 (568)
Q Consensus 412 ----------------------------l-~~~~~~~e~l~~------~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~L 454 (568)
+ -.+.|+.+.+.. ..+. ....+|++|.-+|++.....+|...+
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kF 413 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKF 413 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCcccc
Confidence 0 001111111110 0111 23456789999999998888899999
Q ss_pred CHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCC
Q psy16366 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGD 534 (568)
Q Consensus 455 SgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~ 534 (568)
|||-|.||+|||||...|-+|+|||||||||....-+|-+.|..|..|++|||||..|+..+|+.|+.+.+.++..|.|+
T Consensus 414 SGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGN 493 (807)
T KOG0066|consen 414 SGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGN 493 (807)
T ss_pred CCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy16366 535 FDDYREKLLTS 545 (568)
Q Consensus 535 ~~~~~~~~~~~ 545 (568)
|.-+++.+...
T Consensus 494 Y~~FKKmY~Qk 504 (807)
T KOG0066|consen 494 YTLFKKMYAQK 504 (807)
T ss_pred HHHHHHHHHHH
Confidence 88776544433
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=228.48 Aligned_cols=178 Identities=21% Similarity=0.259 Sum_probs=112.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC----------------cCCCccEEEECCCe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE----------------LTPNKGELRKSPRL 399 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~----------------~~p~~G~i~~~~~~ 399 (568)
++++|.- +| ++..++.+++ |++++|+||||||||||+++|+++ +.+.+|... ...
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~--~~~ 74 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSV--MSA 74 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCC--ceE
Confidence 3444442 46 4566777776 889999999999999999999844 334333100 012
Q ss_pred eEEEEecCCCCCCCCCC---CHH---HHHHH---hc--CCCHHHHHHHHHhCCCC--------------------Ccccc
Q psy16366 400 RIGKFDQHSGEHLFPDD---TPC---EYLMK---LF--NLPYEKSRRQLGMFGLP--------------------SYAHT 448 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~---~~~---e~l~~---~~--~~~~~~~~~~L~~~~l~--------------------~~~~~ 448 (568)
.+.++++++..++.... ++. .+... .+ ....+++...+..+++. ... .
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~-~ 153 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDE-Q 153 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccc-c
Confidence 23333333211111000 000 00000 00 01222333334443332 222 2
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
.++..||||||||++||++|+ .+|++|||||||++||+.+...+.+.|.++ +.+||++||+.+ +..+||++++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d~i~~ 232 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVADKFYG 232 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCCEEEE
Confidence 467899999999999999996 368999999999999999999999999887 346777777755 5689999998
Q ss_pred EE
Q psy16366 523 LE 524 (568)
Q Consensus 523 l~ 524 (568)
|.
T Consensus 233 l~ 234 (243)
T cd03272 233 VK 234 (243)
T ss_pred EE
Confidence 86
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=212.61 Aligned_cols=188 Identities=20% Similarity=0.296 Sum_probs=118.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc-h----hHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD-D----SAV 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~-~----~~~ 133 (568)
+|+++|++.+|++..+|+||||+|.+||.++||||||||||||||||++.. .|.++.|.+.++.+.... . ..+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--CCCCceEEECCEeccchhhHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999975 345566655444432211 0 001
Q ss_pred HHHHhccHHHHHHHHHHHHHhh----------ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHh-cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLER----------DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAG-LGFTT 195 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~----------~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~-lg~~~ 195 (568)
+.|++. +.+..-...+++ ....+..++-.++++.+. -....++++++|.+++. |-+.+
T Consensus 80 GmVFQ~----fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 80 GMVFQQ----FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred Ceeccc----ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 122221 011110011111 000000111122222211 11224667777766654 33333
Q ss_pred ---cCCCch------HHH------HHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHH
Q psy16366 196 ---IYIPSS------RVH------EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKM 252 (568)
Q Consensus 196 ---L~~ePn------~L~------~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~ 252 (568)
|||||. +.. .-|++-|.|+|+|||++.|..+|||||+.|++|+++..+.+-+.|.+.
T Consensus 156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999992 222 223456899999999999999999999999999998876544555543
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-26 Score=227.72 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=121.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEEC--------------CCeeEEEEecCCCCC-------CCCCCCHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKS--------------PRLRIGKFDQHSGEH-------LFPDDTPC 419 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~--------------~~~~i~~~~q~~~~~-------l~~~~~~~ 419 (568)
..+++|+||||||||||+++|++++.|+. |.++.. ...++++++|++... +++..++.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 56999999999999999999999998863 455431 124789999986321 22333333
Q ss_pred HHHHH-----h-cC---CCHHHHHHHHHhCCCCC-------------------ccccCCCCCCCHhHHHHHHHHHHHc--
Q psy16366 420 EYLMK-----L-FN---LPYEKSRRQLGMFGLPS-------------------YAHTIPIRDLSGGQKARVALAELTL-- 469 (568)
Q Consensus 420 e~l~~-----~-~~---~~~~~~~~~L~~~~l~~-------------------~~~~~~~~~LSgGqkqRv~lA~al~-- 469 (568)
+.+.. . .+ ...+++.++|..+++.. .....++.+||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 22110 0 11 23467788999999861 1122467899999999999999997
Q ss_pred --cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEE
Q psy16366 470 --NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 470 --~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
.+|++|||||||++||+.+...+.+.|.++ +.+||+|||+.+.+. .||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 578999999999999999999999999875 458999999966665 689998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-27 Score=213.43 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=156.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+++++||+.+- -|-.+|.++..|+++-+||||||||||||-.|+|++ |.+|+|...+. ..-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57788887543 467889999999999999999999999999999997 57999986532 23467
Q ss_pred EecCCCCCCCCCCCHHHHHHHhcCC--CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc-----CC--Ce
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLFNL--PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-----NP--DI 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~-----~p--~l 474 (568)
+.|+.... ..+.++.|+...... ....+..+...+++++.+.+ .+..|||||-|||-||..+++ +| ++
T Consensus 77 LsQqq~p~--f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~R-s~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTPP--FAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCCc--chhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhh-hhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 87775422 235667776432211 12345677888999987775 689999999999999998876 33 69
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH-HHHHHHHHHh
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD-YREKLLTSLG 547 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~-~~~~~~~~~~ 547 (568)
||+|||.|+||.....+|-..|.++ +.+|||++||++--.+.++++|.+..|++.. .|..++ ++..++....
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~-~G~~~eVlt~~vL~q~f 229 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA-SGRREEVLTPPVLAQAY 229 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe-ecchhhhcChHHHHHHh
Confidence 9999999999998877777766655 6799999999999999999999999999975 455444 4555655543
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-27 Score=230.20 Aligned_cols=176 Identities=22% Similarity=0.298 Sum_probs=125.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
|+++|.. .| ++..++++++| ++++|+||||||||||+++|.-.+-.. +......++++++++. .+++.
T Consensus 6 l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~---~~~~~~~~i~~~~~~~--~~~~~ 73 (212)
T cd03274 6 LVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFR---ASKMRQKKLSDLIHNS--AGHPN 73 (212)
T ss_pred EEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccC---HHHhhhhhHHHHhcCC--CCCCC
Confidence 5677776 78 67789999988 899999999999999999998221110 0011123466766654 23444
Q ss_pred CCHHHHHHH-----------hcCCCHH--H----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc----CCCe
Q psy16366 416 DTPCEYLMK-----------LFNLPYE--K----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN----NPDI 474 (568)
Q Consensus 416 ~~~~e~l~~-----------~~~~~~~--~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~----~p~l 474 (568)
.+..+++.. ..+.... . ..++++.++++...+. ++..||+|||||++||++++. +|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~-~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWK-NISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeecccccccc-chhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 444332111 1122111 1 1345567778765554 678999999999999999964 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
+||||||++||+.+...+.+.|.++ ++++|+|||+. .+..+||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 9999999999999999999999887 36899999996 55679999999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=218.64 Aligned_cols=157 Identities=32% Similarity=0.387 Sum_probs=119.3
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHh----cCcCCCccEEEE--------CCCeeEEEEecCC-CCCCC--CCCCHH
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLK----GELTPNKGELRK--------SPRLRIGKFDQHS-GEHLF--PDDTPC 419 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~----G~~~p~~G~i~~--------~~~~~i~~~~q~~-~~~l~--~~~~~~ 419 (568)
.++++.+| +++|+|||||||||||++|. |...|+.|.+.. .....+++++|++ ...+. ...++.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44566677 99999999999999999994 999998875431 1245789999887 22221 122444
Q ss_pred HHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHH------HHHHHHHccCCCeEEEeCCCCCCCHHHHH-HH
Q psy16366 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR------VALAELTLNNPDILILDEPTNNLDIESID-AL 492 (568)
Q Consensus 420 e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR------v~lA~al~~~p~lLlLDEPt~~LD~~~~~-~l 492 (568)
+.+.. ....++.+.+ ..++..||+||+|| ++||++++.+|++|||||||++||+.+.. .+
T Consensus 95 ~~~~~---~~~~~~~~~~----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l 161 (204)
T cd03240 95 ENVIF---CHQGESNWPL----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL 161 (204)
T ss_pred hceee---echHHHHHHH----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH
Confidence 44321 1233333333 23678999999996 78999999999999999999999999999 99
Q ss_pred HHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 493 AEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 493 ~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+.|.++ +.+||+||||++++. .|+++|.|++.
T Consensus 162 ~~~l~~~~~~~~~~iiiitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 162 AEIIEERKSQKNFQLIVITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred HHHHHHHHhccCCEEEEEEecHHHHh-hCCEEEEEeeC
Confidence 9998765 458999999999885 68999998754
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=218.13 Aligned_cols=179 Identities=23% Similarity=0.339 Sum_probs=138.2
Q ss_pred EEeCCCceeeeeeeEEEeCCC-----EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCC
Q psy16366 343 FGYPGGKVLLEKVNFGLDMES-----RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 343 ~~y~~~~~il~~vs~~i~~Ge-----~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~ 417 (568)
+.||+-+..+.+..+.|..|+ ++..+|.||.|||||+++++|.++|+.|.= -+...++|-+|....- ..-+
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e--~p~lnVSykpqkispK--~~~t 418 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE--IPVLNVSYKPQKISPK--REGT 418 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc--ccccceeccccccCcc--ccch
Confidence 567766777888899998885 589999999999999999999999998731 2345788888875421 1234
Q ss_pred HHHHHHHh---cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 418 PCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 418 ~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
+...+... .....+-+.+.++-+.++...+. .+..|||||+|||+||.+|-..+++++.|||.+.||.+.+..-..
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dq-evq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQ-EVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhH-HhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 44444321 12344555666777766655543 578999999999999999999999999999999999998766555
Q ss_pred HHHh----cCceEEEEecchHHHHhhCceEEEEECC
Q psy16366 495 AIKN----YQGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 495 ~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+++ .+.|-.+|.||.-.+...+|++++.+..
T Consensus 498 vikRfilhakktafvVEhdfImaTYladrvivf~G~ 533 (592)
T KOG0063|consen 498 VIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQ 533 (592)
T ss_pred HHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecC
Confidence 5554 4689999999999999999999988754
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=212.86 Aligned_cols=182 Identities=21% Similarity=0.306 Sum_probs=127.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC--------------ceEEEEec
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--------------IDLLYCEQ 123 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~--------------~~i~~~~q 123 (568)
..|+++|++|+|+++++|+||||+|.+|++++||||||+|||||+|+|.|...|..+. ..|.|++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 4799999999998768999999999999999999999999999999999964432221 35789998
Q ss_pred cccCC---chhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCC
Q psy16366 124 EVEAS---DDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 124 e~~~~---~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~ 193 (568)
....+ +.++.+.|......+..++.. .+..+...+.++++++ +.++..|+++++|..||..-.
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~-------~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRR-------LNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred ccccCCCCCcCHHHHHHccCccccccccc-------ccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 65433 233334443221111111100 0111123334444433 356778999999999887655
Q ss_pred Cc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+. ++||| .+|.++-++ ++|||+||||++.+...||+|+.|+.. +.. .|+.+.+
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~-~~~-~G~~~~~ 225 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRH-LIA-SGPPEEV 225 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCe-eEe-ccChhhc
Confidence 54 88999 266666666 999999999999999999999999764 444 3544433
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-25 Score=215.78 Aligned_cols=178 Identities=22% Similarity=0.304 Sum_probs=122.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-------------------E
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-------------------L 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-------------------~ 119 (568)
.++++|+||+|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.| .
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEE
Confidence 5789999999999999999999999999999999999999999999999643 333333 4
Q ss_pred EEeccccCC-chhHHHHHHhccHHHHHHHHHHHHHhhcc--CCChHHHHHHHHHHH-------hccCCCChHHHHHHHHH
Q psy16366 120 YCEQEVEAS-DDSAVNIVLSADKNRVKLLKECSKLERDE--SGDNQLRLTEVYDEL-------KSIEADAAEPRARRILA 189 (568)
Q Consensus 120 ~~~qe~~~~-~~~~~~~v~~~~~~~~~l~~~~~~l~~~~--~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~ 189 (568)
|++|+.... ..++.+.|.......... +. ...+.+.+.+.++.+ +.+...++++|++..++
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~---------~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGL---------FGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCccccc---------ccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHH
Confidence 555553222 222222222111100000 11 011122233333332 23455688899988887
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-.+. |+|||. .+.++.++.+.|+|+|.||+++...+||+++.|.+|+++..+.+-+
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcch
Confidence 665443 899992 3445555668999999999999999999999999999998766543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-25 Score=225.48 Aligned_cols=194 Identities=25% Similarity=0.318 Sum_probs=147.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCC---C-
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSG---E- 410 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~---~- 410 (568)
-|+++||.|.|+....=+..||++|++||++-|+|.||||||||+++|+|+++|++|+|.+++..- +.+.. .
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV----~~e~ledYR~ 397 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----SAEQLEDYRK 397 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC----CCCCHHHHHH
Confidence 589999999996554668899999999999999999999999999999999999999998875320 00000 0
Q ss_pred ---CCCCCCCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccc----cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 411 ---HLFPDDTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAH----TIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 411 ---~l~~~~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~----~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
..|.+.-..+.+....+ .+.+.+..+|.++.+.+... ....-.||.|||+|+++.-|++.+.+||++||-.+
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 00111111111112222 35677788888776653211 11245899999999999999999999999999999
Q ss_pred CCCHHHHHHHHH----HHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcC
Q psy16366 483 NLDIESIDALAE----AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNG 533 (568)
Q Consensus 483 ~LD~~~~~~l~~----~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g 533 (568)
..||.-++.+.. .+++.|+||+.||||-.... .+||++.+++|++++..|
T Consensus 478 DQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~G~~~e~tg 531 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTG 531 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhcCceeeccc
Confidence 999998877655 45788999999999977653 689999999999987654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=209.48 Aligned_cols=184 Identities=23% Similarity=0.317 Sum_probs=122.5
Q ss_pred cceEEeeeEEEeCCce----eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----
Q psy16366 58 VDIKVENFSLSAKGVE----LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---- 129 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---- 129 (568)
.+++++|+++.|++.. +|++|||+|.+||++||||+||||||||+|+|+|..- |..+.|.+.+.+.....
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~ 79 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKA 79 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchh
Confidence 4789999999998877 9999999999999999999999999999999999743 44555555444433211
Q ss_pred -hhHHHHHHhccHHHHHHHHHH-HHHh-hccC---CChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCC-
Q psy16366 130 -DSAVNIVLSADKNRVKLLKEC-SKLE-RDES---GDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFT- 194 (568)
Q Consensus 130 -~~~~~~v~~~~~~~~~l~~~~-~~l~-~~~~---~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~- 194 (568)
...++.|++.+..-..-..-. ..+. .+.. .+.+.+..++++.+. .....++++++|.+++..-..
T Consensus 80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 112333443322211100000 0000 0111 112333444444331 122347788888777654333
Q ss_pred c---cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 195 T---IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 195 ~---L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
+ ++||| |.|.++-+.++.|+|+||||...+..+||||++|++|+++...
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~ 224 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEee
Confidence 2 88999 3566777788999999999999999999999999999999754
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=216.53 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=114.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------CeeEEEEec--CCCCCCCCCC---CHHHH
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------RLRIGKFDQ--HSGEHLFPDD---TPCEY 421 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------~~~i~~~~q--~~~~~l~~~~---~~~e~ 421 (568)
.+++|+|||||||||||.+|++.+.+..|.++... ...+...++ ++...++... ....+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 39999999999999999999999987767664311 123333333 2211111100 00000
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCcc---------------------ccCCCCCCCHhHHHHHHHHHHHccC----CCeEE
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYA---------------------HTIPIRDLSGGQKARVALAELTLNN----PDILI 476 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~---------------------~~~~~~~LSgGqkqRv~lA~al~~~----p~lLl 476 (568)
...........+.+++..+|+.... ...++.+||+|||||++||++++.+ |+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 0011123455667788888885221 1123589999999999999999864 89999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEEC
Q psy16366 477 LDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 477 LDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
|||||++||+.+...+.+.|.++ +.+||+||||.+++ ..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeEEEEEe
Confidence 99999999999999999999876 46899999998877 57999988863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=204.47 Aligned_cols=160 Identities=20% Similarity=0.213 Sum_probs=116.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-----cE----EEE--CCCeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-----GE----LRK--SPRLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-----G~----i~~--~~~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
++++++++.+| +++|+|||||||||||..|...+.... |. +.. .....|.+.+++.. ++..
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~----- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN----- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC-----
Confidence 46777887776 789999999999999999875433221 11 000 11345777777653 3321
Q ss_pred HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 421 YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al----~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
.........+.++|.. .... ..++.+||+|||||++||+++ +.+|++|||||||++||+.+...+.+.|
T Consensus 84 ---~~~~~~~~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l 156 (198)
T cd03276 84 ---PLCVLSQDMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLL 156 (198)
T ss_pred ---cCCHHHHHHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHH
Confidence 0111123456666665 3333 457899999999999999999 6899999999999999999999998888
Q ss_pred Hhc-----C-ceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 497 KNY-----Q-GGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 497 ~~~-----~-~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
.+. + .+||++||+++.+..+ |+|-++..+.
T Consensus 157 ~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 157 VKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 663 2 3799999999999886 8998887643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=203.10 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=114.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~ 138 (568)
.+.+++++++|++..+|+|+||+|.+||+++||||||||||||||+|+|... |..+.+...++++ ......+..++|
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCCCCEEEEec
Confidence 5889999999999999999999999999999999999999999999999743 3444444444433 111111122222
Q ss_pred ccHHHHHHHHHHHHHhh-cc-----CCChHHHHHHHHHHHhcc-------CCCChHHHHHHHHHhcCCCc----cCCCc-
Q psy16366 139 ADKNRVKLLKECSKLER-DE-----SGDNQLRLTEVYDELKSI-------EADAAEPRARRILAGLGFTT----IYIPS- 200 (568)
Q Consensus 139 ~~~~~~~l~~~~~~l~~-~~-----~~~~~~~l~~v~~el~~~-------~~~~~~~~~~~~L~~lg~~~----L~~eP- 200 (568)
.+. ..-.....+.... +. ..+...+..+.++.+..- ...|+++++|.+++..-... |+|||
T Consensus 80 ~~~-LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 80 EDA-LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred cCc-ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111 0000000000000 00 011122333344333211 12478889988887643332 88999
Q ss_pred ------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCC
Q psy16366 201 ------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMK 237 (568)
Q Consensus 201 ------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g 237 (568)
+||.++.++.+.|||+||||.++.-.++|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 3788888888999999999999999999999999984
|
|
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=191.78 Aligned_cols=195 Identities=21% Similarity=0.261 Sum_probs=154.2
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe-----------eE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL-----------RI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~i 401 (568)
.-.+++.++.|.|+...|++-|+|++++.|++..+||.||||||||||+|+|-.-.-.|.|....+. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3468999999999877899999999999999999999999999999999999876666777653321 12
Q ss_pred EEEecC--------CCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 402 GKFDQH--------SGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 402 ~~~~q~--------~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
.|+--. ..-.+..+.++...+....+...++-..++..+.++- . -+++.+|-|||+||.||.-|+..-+
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl-~--WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL-R--WRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc-e--EEEeeccccchhhhHHHHhccccee
Confidence 222110 0011233455555554444555555556677776652 2 2468899999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||||||-|-.||.-.+..|.+.+++- +.|||+.||-.+=+....++++.|.+|+++.
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999753 6799999999999999999999999999964
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=196.12 Aligned_cols=214 Identities=21% Similarity=0.301 Sum_probs=164.6
Q ss_pred CeEEEEeeEEEeC---CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE-----EEC--------C
Q psy16366 334 PVLGLHDVTFGYP---GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL-----RKS--------P 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~---~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i-----~~~--------~ 397 (568)
|+|.+.|++..+. |-..+++++|+++..||+-|+||.+|||||-..|.|+|..+-. =.| +.+ +
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdn-W~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDN-WRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccc-eEEEhhhcccccchhhcCCh
Confidence 4677888887773 2336899999999999999999999999999999999987632 112 111 1
Q ss_pred -------CeeEEEEecCCCCCCCCCCCHHHHHH-------------HhcCCCHHHHHHHHHhCCCCCccc--cCCCCCCC
Q psy16366 398 -------RLRIGKFDQHSGEHLFPDDTPCEYLM-------------KLFNLPYEKSRRQLGMFGLPSYAH--TIPIRDLS 455 (568)
Q Consensus 398 -------~~~i~~~~q~~~~~l~~~~~~~e~l~-------------~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~LS 455 (568)
...|+++||+|..-+.+..++-..+. ..+++....+-++|.++|+.++.+ ..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 13578999998766666555433322 223445556678899999976432 34678999
Q ss_pred HhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEE
Q psy16366 456 GGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKF 531 (568)
Q Consensus 456 gGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~ 531 (568)
.||-|+|+||.|++.+|++||.|||||.+|+.+...+..+|... +.||+++|||+..+.+.||++-||.=|+-++-
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 99999999999999999999999999999999999998888655 46899999999999999999999988875432
Q ss_pred -------cCCHHHHHHHHHHHHhh
Q psy16366 532 -------NGDFDDYREKLLTSLGE 548 (568)
Q Consensus 532 -------~g~~~~~~~~~~~~~~~ 548 (568)
..+-..|...++..+..
T Consensus 241 a~~e~l~~~PhHPYTqALi~a~PD 264 (330)
T COG4170 241 APSEELVTMPHHPYTQALIRAIPD 264 (330)
T ss_pred cchhHHhcCCCCchHHHHHHhCcc
Confidence 22334577777776654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-23 Score=204.36 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=130.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh------H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS------A 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~------~ 132 (568)
+|.++|+++.|+...+++|+||.|..||.++|.||||||||||||+|||... |..+.|.+- +++..+... .
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~-~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLN-GRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEEC-CEeccchhccchhhcc
Confidence 6899999999999999999999999999999999999999999999999754 455555443 332222111 1
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-c----cCC---ChHHHHHHHHHHHh--cc-----CCCChHHHHHHHHHhcCCCc--
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-D----ESG---DNQLRLTEVYDELK--SI-----EADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~----~~~---~~~~~l~~v~~el~--~~-----~~~~~~~~~~~~L~~lg~~~-- 195 (568)
++.|++. ...+.-+...+.+.. + ..+ ....+..++++.++ .+ .-.++++++|.+|+..-...
T Consensus 79 VGfvFQ~-YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 79 VGFVFQH-YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred eeEEEec-hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 2222221 111111111111111 1 111 12334444544332 11 12478889999987754332
Q ss_pred --cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 196 --IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 196 --L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
|+||| .||.++..+++.|.|+||||+++...+||||++|++|+|...+.+++.|.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 88999 29999999999999999999999999999999999999998877777764
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-21 Score=209.41 Aligned_cols=105 Identities=28% Similarity=0.356 Sum_probs=87.4
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
+.|..+||.-...-+|..+|||||.|||-||.-|.... -++||||||.||=..-+..|++.|.++ +-|||+|.|
T Consensus 804 qtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEH 883 (935)
T COG0178 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEH 883 (935)
T ss_pred HHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34677888866666788999999999999999999887 899999999999999999999888765 679999999
Q ss_pred chHHHHhhCceEEEEE-----CCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALE-----KKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~-----~g~i~~~~g~~~~~~~ 540 (568)
+++.|. .||.|+-|- +|.-+...|++++..+
T Consensus 884 NLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 884 NLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred ccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 999995 578887763 3333447898888754
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=193.79 Aligned_cols=189 Identities=20% Similarity=0.255 Sum_probs=118.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh----HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS----AVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~----~~~ 134 (568)
+|+++|+|++|+++.+++|+||+|+.||+++|||||||||||+||+|++.. -|..+.|...+.++...+.. .++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi--ept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI--EPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc--CCCCceEEECCeecccCCHHHHHHhhh
Confidence 589999999999999999999999999999999999999999999999863 35566776666666543322 133
Q ss_pred HHHhccHHH--HHHHHHHHHHhhccCCCh---HHHHHHHHHHHhc---------cCCCChHHHHHH-HHHhcCCCc---c
Q psy16366 135 IVLSADKNR--VKLLKECSKLERDESGDN---QLRLTEVYDELKS---------IEADAAEPRARR-ILAGLGFTT---I 196 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~~~~~~~---~~~l~~v~~el~~---------~~~~~~~~~~~~-~L~~lg~~~---L 196 (568)
+|++...-. ....+...-...+..++. ..+..++++.+.. ....++++++|. ++.+|-..+ |
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 343321000 000000000001122222 2233333332210 011234444332 111121222 7
Q ss_pred CCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 197 YIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 197 ~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+||| +-+.++-+++++|+|+||||.++....+|||.+|++|+++-|..+-+..
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 8888 1344555678999999999999999999999999999999987654443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=207.43 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=130.7
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNI 135 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~ 135 (568)
..|+++|++.+|++..+++|+||+|.+||+++|+||||||||||||+|||-. .|.++.|.+.++++...+. ..+..
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe--~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE--QPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC--CCCCceEEECCEECCCCChhhcccce
Confidence 4689999999999999999999999999999999999999999999999964 4666777776666543321 22344
Q ss_pred HHhccHHHHHHHHHHHHHhh-cc--C--C--ChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 136 VLSADKNRVKLLKECSKLER-DE--S--G--DNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 136 v~~~~~~~~~l~~~~~~l~~-~~--~--~--~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
|++.-. .+--+...+.... +. . . +...+..++++.+ +.....++++++|.+|+.--... |+
T Consensus 82 VFQ~YA-LFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 82 VFQSYA-LFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eecCcc-cCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 443210 0000000000000 00 0 0 1122334433322 12223477888998887643332 88
Q ss_pred CCc--h-----------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 198 IPS--S-----------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 198 ~eP--n-----------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
||| + -|.++.++.|.|.|+||||++....++|||++|++|+|.-.+.+.+.|.+
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999 1 35566777899999999999999999999999999999877666666654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=199.10 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=112.3
Q ss_pred cceEEeeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC-Cch----h
Q psy16366 58 VDIKVENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA-SDD----S 131 (568)
Q Consensus 58 ~~I~i~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~-~~~----~ 131 (568)
.+|.++|++|+|++. ++|+++||+|.+|++++|+|+||||||||+++|+|...| ..+.+.+.+.+... .+. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeeccchhhHHHhhc
Confidence 368899999999765 999999999999999999999999999999999997543 33444332222210 000 0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhh-ccC-C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 132 AVNIVLSADKNRVKLLKECSKLER-DES-G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 132 ~~~~v~~~~~~~~~l~~~~~~l~~-~~~-~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
.+..|++.+...+-.-...+++.. ..+ + +...+..++.+.+. .....|++++.|.+++++-...
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 111222221111100000000100 000 0 01112222222211 1112344555555555442222
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
++|||. .+.++.+..+.|+|+||||++++..+||++++|++|++...+.+++.|.
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 888982 3444444557899999999999999999999999999987655555554
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=232.53 Aligned_cols=104 Identities=24% Similarity=0.310 Sum_probs=89.1
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEec
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSH 508 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsH 508 (568)
+.|..+||.-....++..+|||||.||+-||.-|..+ +.++||||||+||++..++.|++.|++ .+.|||+|.|
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH 1760 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDH 1760 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4678899987766778899999999999999999875 789999999999999999999999665 4789999999
Q ss_pred chHHHHhhCceEEEEEC------CeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWALEK------KNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l~~------g~i~~~~g~~~~~~~ 540 (568)
|++++.. ||.|+-|.. |+| .+.|+++++.+
T Consensus 1761 ~~~~i~~-aD~iidlgp~gG~~GG~i-va~Gtp~~i~~ 1796 (1809)
T PRK00635 1761 DPALLKQ-ADYLIEMGPGSGKTGGKI-LFSGPPKDISA 1796 (1809)
T ss_pred CHHHHHh-CCEEEEcCCCcccCCCEE-EEEeCHHHHhh
Confidence 9999986 899988852 345 47899887754
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-22 Score=209.60 Aligned_cols=190 Identities=22% Similarity=0.265 Sum_probs=153.2
Q ss_pred CCCeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe---eEEEEecC
Q psy16366 332 PPPVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL---RIGKFDQH 407 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---~i~~~~q~ 407 (568)
.+..+++++|++.-|. +..+++|+||+|..|+.+.|.||||||||+|||.|+|+-+-.+|.+....+. .+-|+||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 4578999999999876 5568889999999999999999999999999999999999999999876543 48899999
Q ss_pred CCCCCCCCCCHHHHHHHh--------cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 408 SGEHLFPDDTPCEYLMKL--------FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~--------~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
|. ++.-|..+.+... ...+.+.+.+.|+.++|.+...+ .=...||+||+||+++||.+.
T Consensus 510 PY---mt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 510 PY---MTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred CC---ccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 84 3333666643211 12345566666666655432111 113589999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEEC
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEK 525 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~ 525 (568)
.+|++-||||-|+++|.+...++.+.+++.+.|.|-|+|...+..- -+.++-|..
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf-Hd~~L~~~g 641 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF-HDYVLRMDG 641 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh-hhEEEEecC
Confidence 9999999999999999999999999999999999999999999864 455655553
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=204.09 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=130.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--HHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--AVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~~~~v 136 (568)
.|+++|++++|++..+++++||+|..||+++|+||||||||||||+|||... |.++.+...+..+...++. -+..|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEE
Confidence 6899999999987669999999999999999999999999999999999743 4556666655555432211 11222
Q ss_pred HhccHHHHHHHHHHHHHhh-c-----cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSADKNRVKLLKECSKLER-D-----ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~-----~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+|... .+--+...+.+.. + ...+...++.++.+-|. .....++++++|.+++..-... |+||
T Consensus 81 FQ~yA-LyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 81 FQNYA-LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred eCCcc-ccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 22110 0000000001100 0 11122344455444331 2345688899998887665554 9999
Q ss_pred c--h-----------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHH
Q psy16366 200 S--S-----------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKK 251 (568)
Q Consensus 200 P--n-----------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~ 251 (568)
| | .+.++-++++.|+|.||||+.++..++|||++|++|+|.-.+.+-+.|.+
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 9 2 45566667889999999999999999999999999999988877777754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=194.58 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=129.6
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
+|+++++|+.|.. ..+++||||+|++||++||||.||+|||||+|+|++.. -|..+.+.+.++++...+...+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le--~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE--RPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCceEEEcCEecccCChHHH
Confidence 5899999999865 47999999999999999999999999999999999974 4677788888877765443322
Q ss_pred H-------HHHhccHHHHHHHHHHHHHhh----c--cC---CChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHh
Q psy16366 134 N-------IVLSADKNRVKLLKECSKLER----D--ES---GDNQLRLTEVYDELKS-------IEADAAEPRARRILAG 190 (568)
Q Consensus 134 ~-------~v~~~~~~~~~l~~~~~~l~~----~--~~---~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~ 190 (568)
. ++++. +.++.......+ + .. .+...|..++++-+.. ..-.++++++|..++.
T Consensus 79 r~~R~~IGMIFQh----FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 79 RQLRQKIGMIFQH----FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHHhhccEEecc----ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence 1 11110 111111000000 0 01 1113344444433211 1123666777766554
Q ss_pred cCCC-c---cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHH
Q psy16366 191 LGFT-T---IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMY 253 (568)
Q Consensus 191 lg~~-~---L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~ 253 (568)
.-.. + |.||| ..|.++.++++.|||+|||-++++..+|||+.+|++|+++..+.-.+.|...+
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 3222 2 55666 26778888999999999999999999999999999999999888788886544
Q ss_pred H
Q psy16366 254 V 254 (568)
Q Consensus 254 ~ 254 (568)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-22 Score=189.73 Aligned_cols=187 Identities=19% Similarity=0.211 Sum_probs=122.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV 136 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v 136 (568)
...|++++++++|+++.+++|+||+|.+||..+|+||||||||||||+|.|.. -|..+.+...+.++...+......+
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll--~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--RPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC--CCCCCeEEEcCcchhccCHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999974 3566677777777654433222111
Q ss_pred HhccHHHHHHHHHHHHHhh----c--------cCCCh-HHHH-HHHHHHHhccCC-----------CChHHHHHHHHHhc
Q psy16366 137 LSADKNRVKLLKECSKLER----D--------ESGDN-QLRL-TEVYDELKSIEA-----------DAAEPRARRILAGL 191 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~----~--------~~~~~-~~~l-~~v~~el~~~~~-----------~~~~~~~~~~L~~l 191 (568)
. .+.+.+.|..+|-. + +...- ...+ .-+...|+..|. .+++.+-|.+|+..
T Consensus 84 r----~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARA 159 (263)
T COG1127 84 R----KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARA 159 (263)
T ss_pred H----hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHH
Confidence 1 01111111111100 0 00000 1111 112233333332 24555666666542
Q ss_pred -CCCc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 192 -GFTT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 192 -g~~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
-+.+ ++|||. .+.++....+.|+++||||.+.+..+||||++|.+|++.+ .|+.++..
T Consensus 160 ialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~-~Gt~~el~ 234 (263)
T COG1127 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA-EGTPEELL 234 (263)
T ss_pred HhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE-eCCHHHHH
Confidence 2333 789992 3445555678999999999999999999999999999986 46666543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=191.60 Aligned_cols=181 Identities=19% Similarity=0.279 Sum_probs=108.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh---HHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS---AVNIV 136 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~---~~~~v 136 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++...... .+..+
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEe
Confidence 578999999998899999999999999999999999999999999999643 3334443332222110000 00000
Q ss_pred HhccHH--HHHHHHHHH---HHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADKN--RVKLLKECS---KLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~~--~~~l~~~~~---~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+...- .....+... ............+..++.+.+. .+...+.+++.+..++..-+.. |+|||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000000 000000000 0000000001112233333321 1234577777777665543333 88999
Q ss_pred h---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 201 S---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 201 n---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++ .++.++.+.|||+||||++++..+||+|++|++|++...
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe
Confidence 1 33 333333478999999999999999999999999999764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=193.23 Aligned_cols=187 Identities=18% Similarity=0.257 Sum_probs=113.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---hH----
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---SA---- 132 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~~---- 132 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcc
Confidence 478999999988899999999999999999999999999999999999643 344555544433321110 00
Q ss_pred HHHHHhccHHH--HHHHHHHHH-HhhccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNR--VKLLKECSK-LERDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+..... ....+.... ......... ..+..++.+.+. .+...+.+++++..++..-+..
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 01111110000 000000000 000000000 122233333321 1233577777777766543332
Q ss_pred cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++.. .|+.+.+
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 224 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA-EGTPEEL 224 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE-ecCHHHH
Confidence 889991 44444433 47899999999999999999999999999975 4555543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=194.84 Aligned_cols=167 Identities=18% Similarity=0.164 Sum_probs=110.9
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce--------------EEEEe
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID--------------LLYCE 122 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~--------------i~~~~ 122 (568)
...|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...| ..+. +.|+.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEHHHhhCceEEEe
Confidence 3569999999999988999999999999999999999999999999999997433 2333 33444
Q ss_pred ccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCC
Q psy16366 123 QEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 123 qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~ 194 (568)
|+..... .+..+.+..... .....+..++.+.+ ......+.+++++..++..-+.
T Consensus 88 q~~~l~~~~tv~enl~~~~~-----------------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLK-----------------GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred cCccCCCCCcHHHHHHhccc-----------------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 4432221 122111110000 00011112222221 1123457777777766554333
Q ss_pred c----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 195 T----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 195 ~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++|||. + |.++.+..+.|||+||||++++..+||+|++|++|+++..
T Consensus 151 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 151 RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 2 889991 3 3444344578999999999999999999999999999763
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=191.25 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=108.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v~ 137 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++..... ..+..+.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEc
Confidence 468999999988899999999999999999999999999999999999643 334444433332211000 0000000
Q ss_pred hcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 138 SAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 138 ~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.. .....+ ................+..++.+.+. .....+.+++.+..++..-... ++|||
T Consensus 79 q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 79 QDYALFPHLTVAENI-AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred CchhhccCCcHHHHH-HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000 000000 00000000000000112222333221 1233577777777766543332 88999
Q ss_pred h---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 201 S---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 201 n---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
. ++.+++++ .+.|||+||||.+++..+||+|++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 2 45555543 47899999999999999999999999999864
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=195.00 Aligned_cols=187 Identities=17% Similarity=0.270 Sum_probs=115.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
.|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++....... +.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEE
Confidence 5889999999988899999999999999999999999999999999999643 34455544443332111000 00
Q ss_pred HHHhccHHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 135 IVLSADKNRVKLLKECSKLER--DESGDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~--~~~~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+.+. ..... ....+.+.. ........+..++.+.+. .....+.+++.+..|+..-... ++|||
T Consensus 81 ~~~q~-~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 81 MVFQQ-PHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EEecC-chhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00010 00000 000000100 000111122233333321 1233567777777665543332 88999
Q ss_pred h---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 201 S---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 201 n---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++.++++ ..+.|||+||||++++..+||+|++|++|+++..+.+.+.+
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 1 4444443 34789999999999999999999999999998766555444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=189.88 Aligned_cols=180 Identities=22% Similarity=0.228 Sum_probs=107.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v~ 137 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++..... ..+..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEe
Confidence 478999999998899999999999999999999999999999999999743 333444333322211000 0000000
Q ss_pred hcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 138 SAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 138 ~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.. .....+ ................++.++.+.+. .+...+.+++.+..++..-+.. ++|||
T Consensus 79 q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 79 QNYALYPHMTVYDNI-AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred cChhhccCCCHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 000 000000 00000000000000112222222221 1234577777776665443332 88999
Q ss_pred h---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 201 S---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 201 n---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++.++++ +.+.|||+||||++++..+||+|++|++|+++.+
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 2 4444443 3478999999999999999999999999999764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=202.90 Aligned_cols=173 Identities=22% Similarity=0.260 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------E
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY-----------------C 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~-----------------~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+ +
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEE
Confidence 7999999999998899999999999999999999999999999999999743 33344433 3
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+...... +..+.+... + . .......+...++.++.+.+. .....+.++++|.+|+..-.
T Consensus 84 fQ~~~lfp~~tv~eNi~~~------l-~----~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~ 152 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYG------L-K----MLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI 152 (351)
T ss_pred eCCcccCCCCCHHHHHHHH------H-h----HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 333222111 111111000 0 0 000000001122333333221 22345788888887766544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
.. |+|||. .|.++.++++.|+|+||||++++..+||+|++|++|++...+.
T Consensus 153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~ 220 (351)
T PRK11432 153 LKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220 (351)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 33 889991 3445555668999999999999999999999999999987543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=195.26 Aligned_cols=185 Identities=20% Similarity=0.270 Sum_probs=111.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
..+++++++.+|||-.+++||||++++||++|||||||||||||+++|+|-. -|..+.+.+.++++.......
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~--~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY--KPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc--cCCCceEEECCcccCCCCHHHHHhcc
Confidence 3578999999999999999999999999999999999999999999999963 355677777777665433221
Q ss_pred ----------------HHHHHhccHHHHHHHHHHHHHhhccCC--Ch---HHHHHHHHHHHhcc-------CCCCh-HHH
Q psy16366 133 ----------------VNIVLSADKNRVKLLKECSKLERDESG--DN---QLRLTEVYDELKSI-------EADAA-EPR 183 (568)
Q Consensus 133 ----------------~~~v~~~~~~~~~l~~~~~~l~~~~~~--~~---~~~l~~v~~el~~~-------~~~~~-~~~ 183 (568)
.+.|+-....+.. .......... .. .++..++++.+... +..+. ++|
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~----~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLG----LSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhh----hhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 1111111000000 0000000000 00 11111222211100 00111 112
Q ss_pred HHHHHHhcCCCc---cCCCc----h---------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 184 ARRILAGLGFTT---IYIPS----S---------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 184 ~~~~L~~lg~~~---L~~eP----n---------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
...+...|-..+ |+||| | .+.++-+..+.||++|+||++++..+||||++|+.|++.. .|+++
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA-eG~P~ 235 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA-EGTPE 235 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc-cCCHH
Confidence 222211121111 88999 2 3444434456899999999999999999999999999876 56665
Q ss_pred HH
Q psy16366 248 LF 249 (568)
Q Consensus 248 ~~ 249 (568)
.-
T Consensus 236 eV 237 (250)
T COG0411 236 EV 237 (250)
T ss_pred HH
Confidence 43
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=187.90 Aligned_cols=170 Identities=21% Similarity=0.378 Sum_probs=108.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE---------------EEEecc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL---------------LYCEQE 124 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i---------------~~~~qe 124 (568)
|+++|+++.|+++.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+ .|+.|+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~i~~~~q~ 78 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARNRIGYLPEE 78 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHccEEEeccC
Confidence 468999999988899999999999999999999999999999999999643 333333 333443
Q ss_pred ccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 125 VEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 125 ~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..... .+..+.+.. . .............++.++.+.+. .....+.+++.+..++..-...
T Consensus 79 ~~~~~~~tv~e~l~~--------~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 79 RGLYPKMKVIDQLVY--------L---AQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred CcCCcCCcHHHHHHH--------H---HHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 22211 111111100 0 00000000000112222222221 1233567777776665443332
Q ss_pred ---cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 ---IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
++|||. ++.++++.+ +.|||+||||++++..+||++++|++|++..+
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 889992 555555443 67999999999999999999999999998753
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=203.72 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=117.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe----------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE---------------- 122 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~---------------- 122 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEE
Confidence 6899999999998899999999999999999999999999999999999743 3444444433
Q ss_pred -ccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 123 -QEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 123 -qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
|+....+. +..+.+.- .+ . .......+...+..++.+.+. .....++++++|.+|+..-.
T Consensus 82 ~Q~~~lfp~~tv~eNi~~------~~-~----~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~ 150 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAY------GL-K----NRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALA 150 (353)
T ss_pred eCCcccCCCCcHHHHHHH------HH-H----hcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 33221111 11111100 00 0 000000001223334444332 12235778888877765433
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. |+|||. .|.++.++++.|+|+||||++++..+||+|++|++|++..++.+.+.|
T Consensus 151 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 151 TSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 32 889991 344555556899999999999999999999999999998765544444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=198.69 Aligned_cols=176 Identities=19% Similarity=0.218 Sum_probs=112.6
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY----------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~----------------- 120 (568)
.+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEE
Confidence 36899999999998899999999999999999999999999999999999643 33344433
Q ss_pred -EeccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 121 -CEQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 121 -~~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+.|+..... .+..+.+.. ..............+..++.+.+. .+...+.++++|..|+..
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~-----------~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLV-----------FGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHH-----------HHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 333322111 111111100 000000000000112222232221 223457778877776654
Q ss_pred CCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++... |+.+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 220 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE-GRPH 220 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 3332 889992 44444443 378999999999999999999999999998754 5443
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-21 Score=203.90 Aligned_cols=172 Identities=23% Similarity=0.252 Sum_probs=113.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-----------------EEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-----------------LYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-----------------~~~ 121 (568)
.|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+ .|+
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEE
Confidence 5899999999998899999999999999999999999999999999999743 333333 344
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+...... +..+.+... + ............+..++.+.+. .....+.++++|..|+..-.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~------~-----~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~ 149 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFG------L-----KLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (369)
T ss_pred eCCcccCCCCCHHHHHHhH------H-----hhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHh
Confidence 443322211 111111000 0 0000000000122333333321 12345778888887766544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
.. |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++..++
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 33 889991 344554555889999999999999999999999999998653
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=197.81 Aligned_cols=177 Identities=17% Similarity=0.192 Sum_probs=114.3
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE------------------E
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL------------------L 119 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i------------------~ 119 (568)
.+|+++|++++|++..+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+ .
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEE
Confidence 47999999999998899999999999999999999999999999999999643 333333 3
Q ss_pred EEeccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 120 YCEQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 120 ~~~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
|+.|+..... .+..+.+. + ...+......+...+..++.+.+. .+...+.+++.+..++..
T Consensus 84 ~v~q~~~~~~~~tv~e~l~--------~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLL--------V---FGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred EEeccCcCCCCCcHHHHHH--------H---HHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHH
Confidence 4444432221 11111110 0 000000000000122233333221 223457777777666544
Q ss_pred CCCc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
-+.. ++|||. ++.++++++ +.|||++||+++++..+||+|++|++|+++.. |..+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~-g~~~~ 224 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAE-GAPHA 224 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 3332 889992 455555443 78999999999999999999999999999764 55443
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=191.16 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=108.0
Q ss_pred ceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----
Q psy16366 59 DIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---- 132 (568)
+|+++|++++|++ +++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~ 78 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFL 78 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHH
Confidence 4789999999964 479999999999999999999999999999999999643 34455544443332111000
Q ss_pred ---HHHHHhccHHHH---HHHHHHHHHhhccCC---ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 ---VNIVLSADKNRV---KLLKECSKLERDESG---DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 ---~~~v~~~~~~~~---~l~~~~~~l~~~~~~---~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+.+.. ... ...+........... ....++.++.+.+. .....+.++++|..++..-+..
T Consensus 79 ~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 79 RRHIGMVFQDH-RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred HHhceEEecCc-cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 00011100 000 000000000000000 01122233333221 1234567777777776544433
Q ss_pred ---cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 196 ---IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
|+|||. ++.++++++ +.|||+||||.+++..+||+|++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 889992 455555443 78999999999999999999999999875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=182.80 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=118.3
Q ss_pred cceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch------
Q psy16366 58 VDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD------ 130 (568)
Q Consensus 58 ~~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~------ 130 (568)
.+|+++|++.+| +++.+|+||||+|++||+++||||||||||||||+|+|.. .|..+.+...+-++.....
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~--d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV--DPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc--CCCcceEEecccchhccchHHHHHH
Confidence 479999999999 7889999999999999999999999999999999999952 3444455443333322221
Q ss_pred -----------------hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH-------HhccCCCChHHHHHH
Q psy16366 131 -----------------SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE-------LKSIEADAAEPRARR 186 (568)
Q Consensus 131 -----------------~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e-------l~~~~~~~~~~~~~~ 186 (568)
+++..|+.....+...+ ..+..+.+..+..+.-+.+++ +...+..++++++|.
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~---~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRV 156 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTW---RSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRV 156 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHH---HHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHH
Confidence 12222221110000000 000001111111111112222 122334566777776
Q ss_pred HHHhcCCCc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.++..-.+. |.||| +.|.++.++.|.|||+..|+.++...+|||||-|.+|++++ .|+.+
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf-Dg~~~ 233 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF-DGPAS 233 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE-eCChh
Confidence 666544433 88999 26777777889999999999999999999999999999986 45443
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=200.70 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=111.6
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---H
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---V 133 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~ 133 (568)
...|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccE
Confidence 347999999999999999999999999999999999999999999999999743 33444444333321110000 0
Q ss_pred HHHHhc-----cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 134 NIVLSA-----DKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 134 ~~v~~~-----~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
..+.+. .......+.....+..........+..++.+.+. .+...+.+++.+..++..-+.. ++
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiL 196 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000000 0000000000000000000001112223333221 2234577777776665433222 88
Q ss_pred CCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 198 IPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 198 ~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
|||. ++.+++++ .+.|||++||+++++..+||+|++|++|+++..
T Consensus 197 DEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~ 253 (340)
T PRK13536 197 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9992 44444433 378999999999999999999999999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=193.07 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc-cCCCceEEEEeccccCCchhH----H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA-IPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~-ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
+|+++|+++.|+++++|+|+||+|.+|++|+|+||||||||||+++|+|...+ .|..+.+.+.++++...+... +
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 58899999999988999999999999999999999999999999999996432 244555554443332111000 0
Q ss_pred HHHHhccHHHH--HHHHHH---HHHhhc-cCCC-hHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhcCCCc
Q psy16366 134 NIVLSADKNRV--KLLKEC---SKLERD-ESGD-NQLRLTEVYDELK-----------SIEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 134 ~~v~~~~~~~~--~l~~~~---~~l~~~-~~~~-~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~lg~~~ 195 (568)
..+.+.. ... ...+.. ...... .... ...++.++.+.+. .....+.+++.+..++..-+..
T Consensus 82 ~~~~q~~-~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQP-NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCC-ccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 0000000 000 000000 000000 0000 1112233333221 1233577777777766544433
Q ss_pred ----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 196 ----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
++|||. ++.+++.+ .+.|+|+||||++++..+||+|++|++|+++..+...+
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 227 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKE 227 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHH
Confidence 889992 45555543 27899999999999999999999999999987544333
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-21 Score=198.45 Aligned_cols=186 Identities=19% Similarity=0.331 Sum_probs=115.1
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|++ .++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~ 78 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELT 78 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHH
Confidence 4899999999952 479999999999999999999999999999999999743 44555555554443211110
Q ss_pred -----HHHHHhccHHHH---HHHHHHH-HHh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRV---KLLKECS-KLE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~---~l~~~~~-~l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+++.. ... ...+... .+. .........+..++++.+. .....++++++|..++..-..
T Consensus 79 ~~r~~Ig~v~Q~~-~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 79 KARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred HHhcCEEEEECCc-cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 00111100 000 0000000 000 0000011223333333321 122357778887777654333
Q ss_pred c----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 195 T----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 195 ~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
. |+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~-g~~~~ 227 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-GTVSE 227 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 2 889991 34444444588999999999999999999999999999864 55443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=190.24 Aligned_cols=175 Identities=22% Similarity=0.242 Sum_probs=110.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------EE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------------YC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------------~~ 121 (568)
.|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+. |+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEE
Confidence 4889999999998899999999999999999999999999999999999743 2333333 33
Q ss_pred eccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhc-c--CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 122 EQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERD-E--SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 122 ~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~-~--~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
.|+..... .+..+.+.... ..... . .. ....++.++.+.+. .....+.+++.+..++
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGL-----------RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhh-----------hhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHH
Confidence 33322111 11111110000 00000 0 00 00111222222221 1233567777777665
Q ss_pred hcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-... ++|||. ++.+++ ++.+.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 222 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV-GTPD 222 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe-cCHH
Confidence 543332 889991 344444 33478999999999999999999999999999754 4433
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-21 Score=187.11 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=106.4
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|+++ ++|+++||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHh
Confidence 47899999999876 89999999999999999999999999999999999643 33444443332221100000
Q ss_pred -HHHHHhcc-----HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 -VNIVLSAD-----KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 -~~~v~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.. ......+............+...+..++.+.+. .....+.+++.+..|+..-...
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 00000000 000000000000000000000112222222221 1223466777766665433322
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++|||. ++.+++.+ .+.|+|+||||.+++..+||++++|++|++..
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 889992 44444433 37899999999999999999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-21 Score=186.71 Aligned_cols=169 Identities=25% Similarity=0.268 Sum_probs=106.4
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE--------------EEE
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL--------------LYC 121 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i--------------~~~ 121 (568)
|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+ .|+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~i~~v 78 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTGPGPDRGYV 78 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccccCcEEEE
Confidence 468999999987 789999999999999999999999999999999999743 333333 333
Q ss_pred eccccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+..... .+..+.+. +.. ............+..++.+.+ ......+.+++++..++..-.
T Consensus 79 ~q~~~~~~~~tv~e~l~--------~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~ 147 (220)
T cd03293 79 FQQDALLPWLTVLDNVA--------LGL---ELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALA 147 (220)
T ss_pred ecccccccCCCHHHHHH--------HHH---HHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 33322111 11111110 000 000000000011222222222 122345777777776654433
Q ss_pred Cc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEc--CCeeeE
Q psy16366 194 TT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLD--MKKLFY 241 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~--~g~l~~ 241 (568)
.. ++|||. ++.+++ +..+.|||+||||++++..+||+|++|+ +|+++.
T Consensus 148 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 148 VDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred cCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 22 889992 444444 3347899999999999999999999999 799864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=185.99 Aligned_cols=177 Identities=24% Similarity=0.335 Sum_probs=106.2
Q ss_pred EeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc-hhHHHHHHhc
Q psy16366 62 VENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD-DSAVNIVLSA 139 (568)
Q Consensus 62 i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~-~~~~~~v~~~ 139 (568)
++|++++|++ +.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++.... ...+..+.+.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecC
Confidence 6799999987 889999999999999999999999999999999999643 33444443332221000 0000000010
Q ss_pred cHHHHHHHHHHHHHhh-c-cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch-----
Q psy16366 140 DKNRVKLLKECSKLER-D-ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS----- 201 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~-~-~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn----- 201 (568)
.........-.+.+.. . .......+..++.+.+. .....+.+++++..++..-... ++|||.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 0000000000000000 0 00111123344444332 1233577777777766543322 889992
Q ss_pred ----HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeee
Q psy16366 202 ----RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240 (568)
Q Consensus 202 ----~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~ 240 (568)
++.++++.+ +.|+|+||||++++..+||+|++|++|+++
T Consensus 160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 160 KNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 455555433 789999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=200.64 Aligned_cols=172 Identities=20% Similarity=0.209 Sum_probs=114.0
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE----------------
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC---------------- 121 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~---------------- 121 (568)
+|+++|++++| +++.+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEE
Confidence 58999999999 77899999999999999999999999999999999999743 334444443
Q ss_pred -eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC
Q psy16366 122 -EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 122 -~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg 192 (568)
.|+...... +..+.+... + . ...........++.++.+.+. .....++++++|.+|+..-
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~------~-~----~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYG------L-K----IRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhH------H-h----hcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHH
Confidence 333222211 111111000 0 0 000000000122333333221 2234578888888876654
Q ss_pred CCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 193 FTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 193 ~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
... |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++..++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 433 889991 444455556899999999999999999999999999998654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-22 Score=192.82 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=104.8
Q ss_pred eeeeeeEEEeCCC-EEEEECCCCChHHHHHHHHh--------cCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 351 LLEKVNFGLDMES-RVALVGPNGIGKSTFLNLLK--------GELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 351 il~~vs~~i~~Ge-~~~ivG~NGsGKSTLlk~l~--------G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
-+-++||+|.+|+ +++|+||||||||||||+|+ |...|.... ..++|+.|...
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~------~~~~~~~~~~~------------ 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG------SSLPVFENIFA------------ 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc------ccCcCccEEEE------------
Confidence 3567899999996 69999999999999999998 555453221 22344444321
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HH---H
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AI---K 497 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l---~ 497 (568)
.++...... ...+++|+|++|++.+++++ .+|+++|+||||++||+.....+.. .+ .
T Consensus 78 -----------------~lg~~~~l~-~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~ 138 (200)
T cd03280 78 -----------------DIGDEQSIE-QSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL 138 (200)
T ss_pred -----------------ecCchhhhh-cCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 111111111 24578999999999999884 8999999999999999998776643 33 3
Q ss_pred hcCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 498 NYQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 498 ~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
+.+.++|++||+.+ +..+|++++.|++|++.
T Consensus 139 ~~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 139 ERGALVIATTHYGE-LKAYAYKREGVENASME 169 (200)
T ss_pred hcCCEEEEECCHHH-HHHHHhcCCCeEEEEEE
Confidence 44679999999965 45788999999999885
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=194.68 Aligned_cols=188 Identities=18% Similarity=0.259 Sum_probs=114.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~ 135 (568)
.|+++|++++|+++.+|+|+||+|++|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +..
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEE
Confidence 4889999999998899999999999999999999999999999999999743 33444444333221110000 000
Q ss_pred HHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 136 VLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 136 v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+.+... .....+.....+..........++.++.+.+. .....+.+++.+..++..-+.. ++||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE 159 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 000000 00000000000000000000122333333321 1233466677666655433322 8899
Q ss_pred ch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. ++.++++.+ +.|||++||+++++..+||||++|++|++.. .|+.+.+
T Consensus 160 Pt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 219 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA-DKKLDEL 219 (301)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 92 555555554 5899999999999999999999999999984 5766654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-21 Score=190.81 Aligned_cols=171 Identities=18% Similarity=0.143 Sum_probs=109.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE--------------EEecc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL--------------YCEQE 124 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~--------------~~~qe 124 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+. |+.|+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCCcEEEEeCC
Confidence 4789999999988899999999999999999999999999999999999743 3333333 33333
Q ss_pred ccCCc-hhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 125 VEASD-DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 125 ~~~~~-~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
..... .+..+.+... .............++.++.+.+. .....+.+++.+..|+..-+..
T Consensus 79 ~~~~~~~tv~e~l~~~-----------~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFG-----------LQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhH-----------HHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 22111 1111111000 00000000000112223333221 1233577777777665543332
Q ss_pred ---cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEc--CCeeeEE
Q psy16366 196 ---IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLD--MKKLFYY 242 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~--~g~l~~~ 242 (568)
++|||. ++.+++++ .+.|||+||||++++..+||+|++|+ +|+++..
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEE
Confidence 889992 55555544 36899999999999999999999998 5888653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-21 Score=191.23 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=113.8
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecc-----ccCCchhH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE-----VEASDDSA 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe-----~~~~~~~~ 132 (568)
.+|+++|++++|+++++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+++ +.......
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHH
Confidence 36999999999988899999999999999999999999999999999999643 344555544433 21111100
Q ss_pred --------HHHHHhccHH-H---HHHHHHH-HHHhhcc--C-CChHHHHHHHHHHHh--------ccCCCChHHHHHHHH
Q psy16366 133 --------VNIVLSADKN-R---VKLLKEC-SKLERDE--S-GDNQLRLTEVYDELK--------SIEADAAEPRARRIL 188 (568)
Q Consensus 133 --------~~~v~~~~~~-~---~~l~~~~-~~l~~~~--~-~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L 188 (568)
+..+.+.... . ....+.. ..+.... . .....+..++.+.+. .....+.+++.+..+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 0001111000 0 0000000 0000000 0 000112222222221 123356777777776
Q ss_pred HhcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 189 AGLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 189 ~~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
+..-+.. ++|||. ++.+++ +.++.|||+||||++++..+||+|++|++|+++.. |..+.
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~-~~~~~ 238 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVES-GLTDQ 238 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEe-CCHHH
Confidence 6543332 889992 444443 44578999999999999999999999999999754 44443
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=198.68 Aligned_cols=173 Identities=19% Similarity=0.224 Sum_probs=114.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc-------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV------------- 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~------------- 125 (568)
.|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEE
Confidence 4889999999998899999999999999999999999999999999999643 3344444433332
Q ss_pred ----cCCch-hHHHHHHhccHHHHHHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 126 ----EASDD-SAVNIVLSADKNRVKLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 126 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
...+. +..+.+.... .... ..... ...+..++++.+. .....+.++++|..|+
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGL-----------TVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred ecCcccCCCCcHHHHHHhhh-----------hhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 21111 1111110000 0000 00000 0123333333321 1223577788887776
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|+++.++.
T Consensus 149 rAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~ 220 (353)
T PRK10851 149 RALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220 (353)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 544333 889991 4555555568899999999999999999999999999987543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.3e-21 Score=189.33 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=112.3
Q ss_pred eEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---hH---
Q psy16366 60 IKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---SA--- 132 (568)
Q Consensus 60 I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~~--- 132 (568)
|+++|++++|++ +.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++..... ..
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999987 789999999999999999999999999999999999643 344455444433321110 00
Q ss_pred -HHHHHhccHHH--HHHHHHHHH-----------HhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 133 -VNIVLSADKNR--VKLLKECSK-----------LERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~-----------l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+..+.+..... ....+.... +..........+..++.+.+. .....+.+++.+..|+..
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 158 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARA 158 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHH
Confidence 00011100000 000000000 000000001122233333321 123356777777776554
Q ss_pred CCCc----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-... ++|||. + |.++.++.+.|||+||||++++..+||++++|++|+++. .|..+.+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 159 LMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHh
Confidence 3332 889992 3 444333347899999999999999999999999999875 4555544
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.1e-21 Score=185.70 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=107.6
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|+++|++++| +++.+|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHH
Confidence 47899999999 46789999999999999999999999999999999999743 34455554443332111000
Q ss_pred --HHHHHhccHHHH---HHHHHHHHHhhcc--CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 --VNIVLSADKNRV---KLLKECSKLERDE--SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 --~~~v~~~~~~~~---~l~~~~~~l~~~~--~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
+..+.+. .... ...+......... .. ....++.++.+.+. .....+.+++.+..++..-+..
T Consensus 79 ~~i~~~~q~-~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 79 RRIGVVFQD-FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred hheEEEecC-hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 0000110 0000 0000000000000 00 01122333333321 1234567777777766543332
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCe
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKK 238 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~ 238 (568)
++|||. ++.++++. .+.|+|+||||++++..+||+|++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 889991 45554443 37899999999999999999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=196.67 Aligned_cols=182 Identities=19% Similarity=0.330 Sum_probs=110.9
Q ss_pred ceEEeeeEEEeC----CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAK----GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|++++|+ ++++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++...+....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~ 78 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELR 78 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHH
Confidence 488999999997 3689999999999999999999999999999999999743 344555544443321111000
Q ss_pred ------HHHHhccHHH--HHHHHHHH---HHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc
Q psy16366 134 ------NIVLSADKNR--VKLLKECS---KLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 134 ------~~v~~~~~~~--~~l~~~~~---~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~ 195 (568)
..+.+...-. ....+... ............+..++.+.+. .....+.++++|..++..-...
T Consensus 79 ~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 79 KARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 0000000000 00000000 0000000001122333333321 1233577788777766543332
Q ss_pred ----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 ----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
++|||. ++.+++ ++.+.|||+||||++++..+||+|++|++|+++..
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 889992 344444 33478999999999999999999999999999864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=185.72 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=105.2
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--- 132 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~--- 132 (568)
|+++|++++|++ +++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~ 78 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAA 78 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHH
Confidence 468999999976 789999999999999999999999999999999999643 34445544443332111000
Q ss_pred -----HHHHHhccHHHHH--HHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRVK--LLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~~--l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. .... ...+.-.+.. ..... ...++.++.+.+. .....+.+++.+..|+..-+.
T Consensus 79 ~~~~~i~~~~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 79 FRRRHIGFVFQSF-NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred HHhhcEEEEeecc-ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 00000000 0000 0000000000 00000 1122233333321 122356777777776654433
Q ss_pred c----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 195 T----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
. |+|||. ++.+++++ .+.|||+||||.+++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 3 889991 44444433 4789999999999997 9999999999874
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-21 Score=190.88 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=113.0
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|.++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLR 78 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHH
Confidence 478999999998 7789999999999999999999999999999999999643 34455544433322111000
Q ss_pred --HHHHHhccHHHHHHHHHHHHHhh-c-------------cCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 133 --VNIVLSADKNRVKLLKECSKLER-D-------------ESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 133 --~~~v~~~~~~~~~l~~~~~~l~~-~-------------~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
+..+.+.. ....-....+.+.. . .......+..++.+.+. .....+.+++.+..++
T Consensus 79 ~~i~~v~q~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 79 RRIGMIFQHY-NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred hheEEEcCCC-cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 00011100 00000000000000 0 00001122333333321 1234567777777765
Q ss_pred hcCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..-+.. ++|||. ++.++++ +.+.|||+||||.+++..+||++++|++|+++. .|+.+.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~ 232 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF-DGAPSE 232 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe-cCCHHH
Confidence 543332 889992 4444443 336899999999999999999999999999974 455544
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-21 Score=201.88 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=149.6
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC----
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH---- 411 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~---- 411 (568)
|.++||-+--|.+..++..++|+|.+|-.+.|+||||||||+|+|+|.|+-|...|.....+..+|-|+||.|...
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtl 561 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTL 561 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcc
Confidence 6788888887777889999999999999999999999999999999999999999999888888899999998521
Q ss_pred ---CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccC--------CCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 412 ---LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI--------PIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 412 ---l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~--------~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
+.-..+..++- ..+...++...+|..+.|+....+. =-..||||||||+++||++..+|..-+|||-
T Consensus 562 RDQIIYPdS~e~~~--~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 562 RDQIIYPDSSEQMK--RKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred cceeecCCcHHHHH--hcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 11122333332 2356667777777666554322110 0146999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 481 TNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
||+..++....+.++.+.++.+.|-|||...+.... +.++-+
T Consensus 640 TsAvsidvE~~i~~~ak~~gi~llsithrpslwk~h-~~ll~~ 681 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKYH-THLLEF 681 (728)
T ss_pred hcccccchHHHHHHHHHhcCceEEEeecCccHHHHH-HHHHhc
Confidence 999999999999999999999999999999998643 444444
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=199.59 Aligned_cols=189 Identities=21% Similarity=0.259 Sum_probs=117.0
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNI 135 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~ 135 (568)
..|+++|++++|+++.+|+++||+|.+||+++|+|||||||||||++|+|... |..+.+.+.+.++..... ..+..
T Consensus 13 ~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 13 PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred ceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEE
Confidence 35899999999998899999999999999999999999999999999999643 334445444433321100 00011
Q ss_pred HHhccHHHH---HHHHHHH-HHh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 136 VLSADKNRV---KLLKECS-KLE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 136 v~~~~~~~~---~l~~~~~-~l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
+++... .+ ...+... .+. .........++.++.+.+. .....++++++|.+|+..-... |+|
T Consensus 91 vfQ~~~-lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD 169 (375)
T PRK09452 91 VFQSYA-LFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD 169 (375)
T ss_pred EecCcc-cCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111000 00 0000000 000 0000000122333333221 1233577888888876644333 889
Q ss_pred Cch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 199 PSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 199 ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
||. .|.++.++.+.|+|+||||++++..+||+|++|++|++...+.+.+.|
T Consensus 170 EP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 170 ESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 991 344555556899999999999999999999999999998764433333
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-21 Score=189.98 Aligned_cols=184 Identities=18% Similarity=0.298 Sum_probs=110.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEE
Confidence 468999999988889999999999999999999999999999999999643 33445544433332111100 00
Q ss_pred HHHhccHHH--HHHHHHHHHHhh-ccC-------------CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 135 IVLSADKNR--VKLLKECSKLER-DES-------------GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~-~~~-------------~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
.+.+..... ....+.. .+.. ... .....+..++.+.+. .....+.+++.+..++..
T Consensus 79 ~v~q~~~l~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 79 RTFQIPRLFPELTVLENV-MVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred EEecccccccCCCHHHHH-HHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHH
Confidence 001100000 0000000 0000 000 000112333333321 122346677777666544
Q ss_pred CCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|++|++.. .|+.+
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 228 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPD 228 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHH
Confidence 3332 889992 44444433 46899999999999999999999999999975 34443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=194.34 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=112.6
Q ss_pred ceEEeeeEEEeCCc-----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC------
Q psy16366 59 DIKVENFSLSAKGV-----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA------ 127 (568)
Q Consensus 59 ~I~i~nls~~~~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~------ 127 (568)
.|+++|++++|++. ++|+|+||+|.+||+++|+||||||||||+++|+|... |..+.+.+.+..+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccc
Confidence 48999999999753 59999999999999999999999999999999999743 334455443222100
Q ss_pred ----------C--------chhH----HHHHHhccH-HHHHHHHHHHHHhh-c-cCC-C---hHHHHHHHHHHHh-----
Q psy16366 128 ----------S--------DDSA----VNIVLSADK-NRVKLLKECSKLER-D-ESG-D---NQLRLTEVYDELK----- 173 (568)
Q Consensus 128 ----------~--------~~~~----~~~v~~~~~-~~~~l~~~~~~l~~-~-~~~-~---~~~~l~~v~~el~----- 173 (568)
. .... +..+++... .... ....+.+.. . ..+ . ...+..++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 0 0000 111111100 0000 000000100 0 000 0 1122233333221
Q ss_pred ---ccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 174 ---SIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 174 ---~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
.....+.+++.+..++..-... |+|||. ++.++++ +.+.|||+||||++++..+||||++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 1223466777777766554332 889992 3333333 34789999999999999999999999
Q ss_pred cCCeeeEEcCChhHH
Q psy16366 235 DMKKLFYYKGNFTLF 249 (568)
Q Consensus 235 ~~g~l~~~~g~y~~~ 249 (568)
++|+++..+.+++.+
T Consensus 239 ~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 239 KDGKIIKDGDTYDIL 253 (305)
T ss_pred ECCEEEEECCHHHHh
Confidence 999998765544444
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=190.73 Aligned_cols=188 Identities=19% Similarity=0.240 Sum_probs=112.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA------ 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~------ 132 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++.......
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhh
Confidence 6899999999998899999999999999999999999999999999999743 33444444333321110000
Q ss_pred -HHHHHhccHHH--HHHHHHHHH-HhhccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 -VNIVLSADKNR--VKLLKECSK-LERDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+..... ..+.+.... +........ ..+..++++.+. .....+.+++.+..++..-+..
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00000000000 000000000 000000000 112222333221 1233567777777665543332
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. +|.++.+..+.|||+||||++++..+||+|++|++|++.. .|..+.+
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 231 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQAL 231 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHH
Confidence 889991 3333333347899999999999999999999999999975 4555443
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=191.27 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=120.2
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HH
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~ 134 (568)
.|.++|++.+|+ ++.+|+|+||+|.+|+.+||+||||||||||+|+|+|... |..+.+.+.++++....... +.
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheE
Confidence 578899999999 6999999999999999999999999999999999999743 45556655555443221110 01
Q ss_pred HHHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.+. ...+.+.-...+..........++.++.+.+.. +...+.+++.|..++..-+.. ++|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 1111100 000111111111111111123456666665432 233566777776554332222 889
Q ss_pred Cch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
||. +|.++.++.+.|||++||.++.+..+||+|++|++|++++++ ..+.
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g-~~~~ 223 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG-TPEE 223 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC-CHHH
Confidence 992 455555544479999999999999999999999999999865 4443
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-21 Score=198.24 Aligned_cols=186 Identities=13% Similarity=0.167 Sum_probs=114.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc--cCCCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA--IPSSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~--ip~~~~i~~~~qe~~~~~~~~ 132 (568)
.|+++|++++|++ ..+|+|+||+|.+||++||||+||||||||+++|+|...+ .|..+.+.+.++++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 4699999999999999999999999999999999996422 123456666555543221111
Q ss_pred --------HHHHHhccHHHH----HHHHHHHH-HhhccCCC---hHHHHHHHHHHHh----------ccCCCChHHHHHH
Q psy16366 133 --------VNIVLSADKNRV----KLLKECSK-LERDESGD---NQLRLTEVYDELK----------SIEADAAEPRARR 186 (568)
Q Consensus 133 --------~~~v~~~~~~~~----~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~----------~~~~~~~~~~~~~ 186 (568)
+..+++...... ........ +....... ...+..++++.+. .....++++++|.
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 111111110000 00000000 00000000 1122233333321 1223467777777
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
.++..-... ++|||. +|.++.++.+.|+|+||||++++..+||+|++|++|+|+..+.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 665432222 889992 4555545568899999999999999999999999999987543
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=178.44 Aligned_cols=146 Identities=18% Similarity=0.235 Sum_probs=102.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
|+++|++++|+++++|+++||+|.+||+++|+||||||||||+++|+|... |..+.+.+.++++...+.. .
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~--~----- 71 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR--D----- 71 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH--H-----
Confidence 578999999998899999999999999999999999999999999999743 4455665544443211100 0
Q ss_pred cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHH
Q psy16366 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEI 206 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~ 206 (568)
... ...... ...+.+++.+..++..-... ++|||. ++.++
T Consensus 72 ------~~~--~~i~~~-------------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 124 (163)
T cd03216 72 ------ARR--AGIAMV-------------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKV 124 (163)
T ss_pred ------HHh--cCeEEE-------------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHH
Confidence 000 000000 00456666666555433322 889992 34444
Q ss_pred Hhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 207 MRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 207 l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 125 l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 125 IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 4332 7899999999999999999999999999863
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-21 Score=193.17 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=114.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SA---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~---- 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++..... ..
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhh
Confidence 4789999999988889999999999999999999999999999999999643 344555544444321110 00
Q ss_pred HHHHHhccHHH-H-HHHHHHHHHh-hccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNR-V-KLLKECSKLE-RDESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~-~-~l~~~~~~l~-~~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+..... . ....+.-.+. ....... ..++.++.+.+. .....+.+++.+..|+..-+..
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111110000 0 0000000000 0000010 112233333321 1234577777777766543332
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. ++.+++.+ .+.|||+||||.+++..+||++++|++|+++.. |..+.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~ 222 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTH-GAPGE 222 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 889992 44444433 368999999999999999999999999999864 44443
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=189.12 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=112.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--------h
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--------D 130 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--------~ 130 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHH
Confidence 5899999999988899999999999999999999999999999999999643 33444444333321100 0
Q ss_pred hH----HHHHHhccHHH--HHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 131 SA----VNIVLSADKNR--VKLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 131 ~~----~~~v~~~~~~~--~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.. +..+.+..... ....+.... ........ ...+..++.+.+. .....+.+++.+..|+..-.
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHh
Confidence 00 00000000000 000000000 00000000 0112223333221 12234666777766654433
Q ss_pred Cc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. ++|||. ++.+++. +.+.|||+||||.+++..+||+|++|++|+++. .|+.+.+
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 231 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKAL 231 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 32 889992 4444443 237899999999999999999999999999975 4555543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-21 Score=188.03 Aligned_cols=185 Identities=15% Similarity=0.252 Sum_probs=111.6
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-- 132 (568)
+|+++|++++|+++ ++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHH
Confidence 47899999999876 89999999999999999999999999999999999743 33445554444332111000
Q ss_pred -----HHHHHhccHHHH---HHHHHHHHHhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -----VNIVLSADKNRV---KLLKECSKLERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -----~~~v~~~~~~~~---~l~~~~~~l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. ... ...+............ ......++.+.+. .....+.+++.+..++..-+.
T Consensus 79 ~~~~~i~~~~q~~-~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 79 KARRRIGMIFQHF-NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HHHhheEEEccCc-ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 00000100 000 0000000000000000 0112223333321 122346677777666543332
Q ss_pred c----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 195 T----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
. ++|||. ++.+++. +.+.|||+||||.+++..+||++++|++|+++.. |+.+
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-~~~~ 226 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE-GTVE 226 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-cCHH
Confidence 2 889992 4444443 3478999999999999999999999999999854 4443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=198.77 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=118.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL----------------- 119 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~----------------- 119 (568)
..+|+++|++++|++..+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEE
Confidence 346999999999988889999999999999999999999999999999999743 3333333
Q ss_pred EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 120 YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 120 ~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
|+.|+...... +..+.+... + . .......+...++.++.+.+. .....+.++++|.+|+..
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~------l-~----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFG------L-K----QDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHH------H-H----HcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 34443322211 111111100 0 0 000000001123333333322 122357788888877654
Q ss_pred CCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-... |+|||. .|.+++++.+.|+|+||||++++..+||+|++|++|++...+.+.+.|
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 4333 889991 344566667899999999999999999999999999998764433333
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=183.00 Aligned_cols=179 Identities=23% Similarity=0.320 Sum_probs=107.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNIV 136 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~v 136 (568)
|+++|+++.|+++++|+|+||+|.+| +++|+||||||||||+++|+|... |..+.+.+.++++....... +..+
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEe
Confidence 57899999998889999999999999 999999999999999999999643 33444444333321110000 0000
Q ss_pred HhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 137 LSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 137 ~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+... .....+............+....+.++.+.+ ......+.+++.+..++..-... |+|||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 00000 0000000000000000000011222222221 11233567777776665543333 88999
Q ss_pred h---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 201 S---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 201 n---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
. ++.++++++ +.|+|+||||++++..+||++++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 1 566666544 5899999999999999999999999999864
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=190.67 Aligned_cols=189 Identities=19% Similarity=0.267 Sum_probs=115.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC-CCceEEEEeccccCCc-----hhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP-SSIDLLYCEQEVEASD-----DSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip-~~~~i~~~~qe~~~~~-----~~~ 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...|.+ ..+.+.+.+.++.... ...
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 6899999999998999999999999999999999999999999999999754432 1245544443332110 000
Q ss_pred ----HHHHHhccHHH--HHHHHHHHHHhh------------ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 133 ----VNIVLSADKNR--VKLLKECSKLER------------DESGDNQLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 133 ----~~~v~~~~~~~--~~l~~~~~~l~~------------~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
+..+.+..... ....+.. .... ........+..++.+.+. .....+.+++.+..
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENV-LIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHhheEEEccccccccCCcHHHHH-HhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 00011110000 0000000 0000 000001112233333221 22335677777766
Q ss_pred HHhcCCCc----cCCCch---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+..-... |+|||. ++.++++. .+.|||+||||++++..+||+|++|++|++. +.|+++.+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQF 240 (262)
T ss_pred HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHh
Confidence 65432222 889992 44444443 3689999999999999999999999999996 45777665
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=189.45 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=114.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS---------- 128 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~---------- 128 (568)
.|+++|+++.|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+..+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccc
Confidence 4899999999998999999999999999999999999999999999999743 3344554443332110
Q ss_pred c---hhH----HHHHHhccHHH--HHHHHHHHH-HhhccCC---ChHHHHHHHHHHHh--------ccCCCChHHHHHHH
Q psy16366 129 D---DSA----VNIVLSADKNR--VKLLKECSK-LERDESG---DNQLRLTEVYDELK--------SIEADAAEPRARRI 187 (568)
Q Consensus 129 ~---~~~----~~~v~~~~~~~--~~l~~~~~~-l~~~~~~---~~~~~l~~v~~el~--------~~~~~~~~~~~~~~ 187 (568)
. ... +..+.+...-. ....+.... ....... ....+..++.+.+. .....+.+++.+..
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 0 000 00000000000 000000000 0000000 01223333443331 12234666777766
Q ss_pred HHhcCCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+..-... ++|||. +|.+++++ .+.|||+||||++++..+||+|++|++|+++. .|+++.+
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 65543332 889992 55555443 37899999999999999999999999999985 4666654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=178.52 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=102.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
++++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... ...
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~-~~~------ 71 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEP-EEV------ 71 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccch-Hhh------
Confidence 468999999988889999999999999999999999999999999999643 34555554443321100 000
Q ss_pred cHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHH
Q psy16366 140 DKNRVKLLKECSKLER-DESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHE 205 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~ 205 (568)
. ..... .+.... ..-..+.+.+. .+.+++.+..++..-... |+|||. ++.+
T Consensus 72 --------~--~~i~~~~q~~~~-~~~~tv~~~~~----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 72 --------K--RRIGYLPEEPSL-YENLTVRENLK----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred --------h--ccEEEEecCCcc-ccCCcHHHHhh----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 0 00000 111100 00001222221 567777776655433322 889992 4444
Q ss_pred HHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 206 IMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 206 ~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
+++++ +.|+|+||||.+++..+||++++|++|++
T Consensus 137 ~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 44332 68999999999999999999999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=223.85 Aligned_cols=187 Identities=26% Similarity=0.342 Sum_probs=147.2
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC--CCccEEEECC--------CeeEEEEecCCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT--PNKGELRKSP--------RLRIGKFDQHSGEHLFPDDT 417 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~--------~~~i~~~~q~~~~~l~~~~~ 417 (568)
.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.+++ ++.+||+.|+.. ++ +..|
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~Di-H~-~~~T 880 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDI-HS-PELT 880 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccc-cC-cccc
Confidence 4579999999999999999999999999999999999742 1245555543 357899999864 33 7889
Q ss_pred HHHHHHHh------cCCCH----HHHHHHHHhCCCCCccccCCCC----CCCHhHHHHHHHHHHHccCC-CeEEEeCCCC
Q psy16366 418 PCEYLMKL------FNLPY----EKSRRQLGMFGLPSYAHTIPIR----DLSGGQKARVALAELTLNNP-DILILDEPTN 482 (568)
Q Consensus 418 ~~e~l~~~------~~~~~----~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqRv~lA~al~~~p-~lLlLDEPt~ 482 (568)
+.|-|... ...+. +.++++++.++|.+..+. -++ -||..||+|+.||--|+.+| -||+||||||
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~da-iVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA-LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhh-hccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 99866421 12222 346778888998865543 344 49999999999999999999 8999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecchHH-HHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 483 NLDIESIDALAEAIKNY---QGGVILVSHDERL-IRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~-i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
|||..+...+++++++. |.|||++-|.++- +.+.-|++++|+.|+-..|.|+..+
T Consensus 960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999888888765 6799999998743 3445689999987766667776544
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-21 Score=194.83 Aligned_cols=186 Identities=20% Similarity=0.287 Sum_probs=112.3
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--h
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--S 131 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~ 131 (568)
.|+++|++++|++ +++|+|+||+|.+||++||+||||||||||+++|+|... |..+.+.+.+.++..... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHH
Confidence 4889999999964 479999999999999999999999999999999999643 344455444433321100 0
Q ss_pred H----HHHHHhccH-HHH--HHHHHHHHHhhccCC-C---hHHHHHHHHHHHhc---------cCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADK-NRV--KLLKECSKLERDESG-D---NQLRLTEVYDELKS---------IEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~-~~~--~l~~~~~~l~~~~~~-~---~~~~l~~v~~el~~---------~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+... ... ...+... +.....+ . ...+..++.+.+.. ....+.+++.|..++..
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAra 158 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIA-FGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGV 158 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHH-hHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHH
Confidence 0 011111100 000 0000000 0000000 0 11223333333211 22346677777766554
Q ss_pred CCCc----cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 192 GFTT----IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 192 g~~~----L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
-... ++|||. ++ .++.++.+.|||+||||++++..+||+|++|++|++..+ |..+.
T Consensus 159 L~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~-g~~~~ 231 (287)
T PRK13637 159 VAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQ-GTPRE 231 (287)
T ss_pred HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 3332 889992 44 444344478999999999999999999999999999865 44433
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=182.60 Aligned_cols=179 Identities=20% Similarity=0.248 Sum_probs=106.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--hhHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DSAVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--~~~~~~v~ 137 (568)
|+++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.... ...+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEec
Confidence 478999999988899999999999999999999999999999999999743 33444444333221000 00000000
Q ss_pred hccHHH--HHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch---
Q psy16366 138 SADKNR--VKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS--- 201 (568)
Q Consensus 138 ~~~~~~--~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn--- 201 (568)
+...-. ....+.. .+..........+..++.+.+. .....+.+++.+..|+..-... ++|||.
T Consensus 79 q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 79 EAPGFYPNLTARENL-RLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred CCCccCccCcHHHHH-HHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 000000 0000000 0000000001112222222221 1233567777776665443332 889992
Q ss_pred ------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 202 ------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 202 ------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++.+++.+ .+.|+|+||||.+++..+||++++|++|+++.
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 34444433 47899999999999999999999999999864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=186.66 Aligned_cols=187 Identities=20% Similarity=0.277 Sum_probs=112.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--H----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--A---- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~---- 132 (568)
+|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+..+...... .
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhc
Confidence 4789999999988899999999999999999999999999999999999643 3344444433332210000 0
Q ss_pred HHHHHhccHHH--HHHHHHHHHHh--hccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 VNIVLSADKNR--VKLLKECSKLE--RDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~l~--~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+..... ....+.. .+. ...... ...+..++.+.+. .....+.+++.+..++..-...
T Consensus 79 i~~~~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENV-MFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred eEEEecccccCCCCcHHHHH-HhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 00000000000 0000000 000 000000 0112223333221 1223466677766665443322
Q ss_pred -cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 -IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 -L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.++++. .+.|+|+||||++++..+||+|++|++|++++ .|+++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 223 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE-DGDPQVL 223 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-eCCHHHH
Confidence 889992 44444433 37899999999999999999999999999985 4666554
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=189.08 Aligned_cols=192 Identities=15% Similarity=0.219 Sum_probs=115.3
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCC--ch
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEAS--DD 130 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~--~~ 130 (568)
.+..|+++|++++|+++.+|+++||+|.+|++++|+|||||||||||++|+|...+. |..+.+.+.++++... ..
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 456799999999998888999999999999999999999999999999999963211 2345554444333210 00
Q ss_pred hH----HHHHHhccHH-HHHHHHHHH---HHhhccCC-ChHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHh
Q psy16366 131 SA----VNIVLSADKN-RVKLLKECS---KLERDESG-DNQLRLTEVYDELK-----------SIEADAAEPRARRILAG 190 (568)
Q Consensus 131 ~~----~~~v~~~~~~-~~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~ 190 (568)
.. +..+.+.... .....+... ........ ....++.++.+.+. .....+.+++.+..++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 00 0000000000 000000000 00000000 00112222222211 12345777887777665
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... ++|||. ++.++++++ +.|||+||||.+++..+||+|++|++|++... |..+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 234 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV-GPTEQ 234 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 43332 889992 555555543 57999999999999999999999999999764 44443
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=175.88 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=130.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS 138 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~ 138 (568)
||+++|+|.+|+++.+++++|++|.+|..++||||||+||||||.+++.... +..+.+.+.++++...+...+..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk--- 75 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAK--- 75 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHH---
Confidence 5899999999999999999999999999999999999999999999997522 34567777788877655443322
Q ss_pred ccHHHHHHHHHHHH---------Hhh---ccC--C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 139 ADKNRVKLLKECSK---------LER---DES--G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 139 ~~~~~~~l~~~~~~---------l~~---~~~--~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
...++++... |.. ++. + ++...+.+..+.+. .+...++++|+|...+.+-.
T Consensus 76 ----~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 76 ----KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred ----HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence 2223333322 211 111 1 12233344444332 23446788899988877654
Q ss_pred Cc----cCCCc-h------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPS-S------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~eP-n------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
+. |+||| | .|.++..++++|+|+|=||..|..-++|+|+-|.+|+++.. |..+
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~-G~~~ 221 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ-GSPD 221 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec-CCHH
Confidence 43 99999 2 57777888999999999999999999999999999999864 4443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=175.47 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=120.4
Q ss_pred ceEEeeeEEEeCCce-eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHH--
Q psy16366 59 DIKVENFSLSAKGVE-LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI-- 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~-ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~-- 135 (568)
||.+.+++.+|+... +++|+||++..|+++||.||||+||||+||+|++.. +|..+.+..++-+..-++..+...
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL--~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL--IPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc--cCCCceEEEeecccccChHHHhhhcc
Confidence 578999999999875 999999999999999999999999999999999964 566666666654443332222111
Q ss_pred HHhcc---HHHHHH---HHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 136 VLSAD---KNRVKL---LKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 136 v~~~~---~~~~~l---~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
|+... ..+... +.-...+..+...+...+..++.++|. ..+..+-+.+++..++..-+.. +||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 00000 000000 000111111222223345555555442 2334556666666665432222 899
Q ss_pred Cc---------hHHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PS---------SRVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 eP---------n~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|| +.+.++++ +-+.+||+.||+++.+..+||+||+|++|++++ .|+.+.
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~-~gs~~~ 219 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL-EGSIEA 219 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE-cCCHHH
Confidence 99 24445444 346899999999999999999999999999885 565443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=185.45 Aligned_cols=186 Identities=13% Similarity=0.155 Sum_probs=110.4
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-H----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~----~~ 134 (568)
|+++|+++.|+++++|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+.++...+.. . +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 468999999998899999999999999999999999999999999999743 3344444433332211100 0 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccCCChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDESGDNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~~~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
.+.+.... .....+..................++.+.+ ..+...+.+++.+..++..-... ++|||
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 11111000 000000000000000000011111222111 12233577777776665443322 88999
Q ss_pred h---------HHHHHHhc----cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 201 S---------RVHEIMRT----WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 201 n---------~L~~~l~~----~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
. ++.+++.+ .+.|+|+||||.+++..+||+|++|++|+++.. |+.+.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~-~~~~~ 218 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS-GAGDE 218 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 2 44444443 378999999999999999999999999999754 44443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=190.13 Aligned_cols=187 Identities=17% Similarity=0.250 Sum_probs=113.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheE
Confidence 5889999999998899999999999999999999999999999999999643 33444444332221100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccCC----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC-------C
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDESG----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF-------T 194 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~-------~ 194 (568)
.+.+.... .....+.. .+...... ....+..++.+.+. .....+.+++.+..++..-. .
T Consensus 80 ~~~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVV-AMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred EEccCCcCCCCCCHHHHH-HhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 01110000 00000000 00000000 01112233333221 22345777887777665544 2
Q ss_pred c---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 T---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 ~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
+ ++|||. +|.++.+..+.|||+||||++++..+||+|++|++|+++. .|.++.+
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA-DGTPAEV 228 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe-eCCHHHH
Confidence 2 889991 4555443447899999999999999999999999999975 4555443
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=184.65 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=110.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++.+|+|+||+|.+|+++||+|||||||||||++|+|... |..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999998899999999999999999999999999999999999743 33444433332221100000 00
Q ss_pred HHHhccHHH--HHHHHHHHH-HhhccCC--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADKNR--VKLLKECSK-LERDESG--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~-l~~~~~~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+..... ....+.... ....... ....++.++.+.+. .....+.+++.+..++..-... ++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 001100000 000000000 0000000 01112233333221 1233567777776665443332 889
Q ss_pred Cch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 199 PSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 199 ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
||. ++.++++ ..+.|||+||||++++..+||+|++|++|++.. .|+.+.
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 219 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEE 219 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHH
Confidence 992 3333332 347899999999999999999999999999975 455443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=186.46 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=113.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----chh--H
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS----DDS--A 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~----~~~--~ 132 (568)
+|.++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++... ... .
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHH
Confidence 5889999999998899999999999999999999999999999999999743 3445555444332110 000 0
Q ss_pred ----HHHHHhccHHHH---HHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 133 ----VNIVLSADKNRV---KLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 ----~~~v~~~~~~~~---~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+.. ... ...+.... ........ ...+..++.+.+. .....+.+++.+..++..-..
T Consensus 80 ~~~~i~~~~q~~-~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 80 LRRNVGMVFQQY-NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHhheEEEecCc-cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 00000000 000 00000000 00000000 0112222222221 123356677777666544332
Q ss_pred c----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 T----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++|||. ++.+++++ .+.|+|+||||.+++..+||++++|++|++.. .|+++.+
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~ 228 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE-QGDASCF 228 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 2 889992 55555543 37899999999999999999999999999974 5666654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=191.40 Aligned_cols=188 Identities=17% Similarity=0.229 Sum_probs=112.9
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--- 132 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~--- 132 (568)
....|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++.......
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhh
Confidence 3457999999999998899999999999999999999999999999999999743 33444444333221111000
Q ss_pred -HHHHHhccHHH--HHHHHHHHHHhhcc-------CCC-hHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCC
Q psy16366 133 -VNIVLSADKNR--VKLLKECSKLERDE-------SGD-NQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 133 -~~~v~~~~~~~--~~l~~~~~~l~~~~-------~~~-~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~ 194 (568)
+..+.+..... ....+.. ...... ... ...++.++.+.+ ......+.+++.+..++..-..
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELV-ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred heEEeeccCcCCCCCcHHHHH-HhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 00011100000 0000000 000000 000 011223333322 1223456777777666554333
Q ss_pred c----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 195 T----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
. |+|||. ++.+++. ..+.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 229 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQ-GAPK 229 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 2 889992 3444443 3478999999999999999999999999998754 4443
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=192.22 Aligned_cols=187 Identities=23% Similarity=0.348 Sum_probs=114.7
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----H
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
.|+++|++++|+ +.++|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+..+....... +
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhE
Confidence 689999999996 5689999999999999999999999999999999999643 34455555443332111100 1
Q ss_pred HHHHhccHHH-H--HHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 134 NIVLSADKNR-V--KLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 134 ~~v~~~~~~~-~--~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
..+.+..... . ...+... +.. ..... ...++.++.+.+. .+...+.+++.|..|+..-...
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVA-FGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEecChhhhhccCcHHHHHH-hhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 1111110000 0 0000000 000 00000 1122333333321 1234577777777766543332
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. ++.++++. .+.|||+||||++++..+||+|++|++|+++.+ |+.+.+
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 225 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAE-GDKSLL 225 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHh
Confidence 889992 44444433 278999999999999999999999999999865 444544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=182.84 Aligned_cols=181 Identities=19% Similarity=0.218 Sum_probs=107.2
Q ss_pred cceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-
Q psy16366 58 VDIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~- 132 (568)
.+|+++|++++|++ .++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++.+.......
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHH
Confidence 46999999999975 369999999999999999999999999999999999743 33444444333321111000
Q ss_pred -------HHHHHhccHH--HHHHHHHHHHHhhccC---CChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 133 -------VNIVLSADKN--RVKLLKECSKLERDES---GDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 133 -------~~~v~~~~~~--~~~l~~~~~~l~~~~~---~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
+..+.+.... .....+.......... .....++.++.+.+. .....+.+++.+..++..-.
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 0000000000 0000000000000000 001122223333221 22345677777776665433
Q ss_pred Cc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 194 TT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.. ++|||. ++.+++ ++.+.|||+||||.+++.. ||++++|++|+++.
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 32 889992 444444 3457899999999999865 99999999999864
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-21 Score=190.71 Aligned_cols=192 Identities=16% Similarity=0.245 Sum_probs=113.2
Q ss_pred eEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC---CceEEEEeccccCCchhH
Q psy16366 60 IKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 60 I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~---~~~i~~~~qe~~~~~~~~ 132 (568)
++|+|++++|.. ..+++||||+|.+||++||||+|||||||+.++|.|....-|. ++.+.+.++++...+...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 679999999843 4799999999999999999999999999999999996321111 234555555543322211
Q ss_pred H--------HHHHhccHHHH----HHHHHHHHHhhc-cCC-ChHHHHHHHHHHHhccCC-------------CChHHHHH
Q psy16366 133 V--------NIVLSADKNRV----KLLKECSKLERD-ESG-DNQLRLTEVYDELKSIEA-------------DAAEPRAR 185 (568)
Q Consensus 133 ~--------~~v~~~~~~~~----~l~~~~~~l~~~-~~~-~~~~~l~~v~~el~~~~~-------------~~~~~~~~ 185 (568)
. ..++|...... .+-.+..+.... ... ...+....+.+.|+.++. .+++.++|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 1 11111111000 000010000000 000 001111222222222221 24445555
Q ss_pred HHHHhcC-CCc---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 186 RILAGLG-FTT---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 186 ~~L~~lg-~~~---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
..++-.- ..+ +.|||. .|.++.++.+.|+|+||||+..+.++||||++|..|+|+..+...+.
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 4443221 111 778992 56666667899999999999999999999999999999997665555
Q ss_pred HHH
Q psy16366 249 FKK 251 (568)
Q Consensus 249 ~~~ 251 (568)
|..
T Consensus 242 ~~~ 244 (316)
T COG0444 242 FKN 244 (316)
T ss_pred hcC
Confidence 543
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-20 Score=196.04 Aligned_cols=183 Identities=16% Similarity=0.187 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC--ceEEEEeccccCCch--hHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS--IDLLYCEQEVEASDD--SAVN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~--~~i~~~~qe~~~~~~--~~~~ 134 (568)
.|+++|++++|+++.+|+|+||+|.+|++++|+|||||||||||++|+|... |.. +.+.+.+.++..... ..+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEE
Confidence 4789999999998899999999999999999999999999999999999743 344 555444433321100 0011
Q ss_pred HHHhccHHHHHHHHHHHHHh------hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cC
Q psy16366 135 IVLSADKNRVKLLKECSKLE------RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IY 197 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~------~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~ 197 (568)
.+++... .+.-+...+.+. .........+..++.+.+. .....+.++++|.+|+..-... |+
T Consensus 83 ~vfQ~~~-l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 83 LLFQNYA-LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEECCcc-cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111100 000000000000 0000011223334444331 1234577888888776544332 88
Q ss_pred CCch-------------HHHHHHhcc-CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 198 IPSS-------------RVHEIMRTW-KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 198 ~ePn-------------~L~~~l~~~-~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
|||. .|.++.+++ +.|+|+||||++++..+||+|++|++|++...+.
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9991 344444455 7899999999999999999999999999987543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=185.45 Aligned_cols=181 Identities=18% Similarity=0.224 Sum_probs=112.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc---cCCCceEEEEeccccCCc--hhHH-
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA---IPSSIDLLYCEQEVEASD--DSAV- 133 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~---ip~~~~i~~~~qe~~~~~--~~~~- 133 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|...+ .|..+.+.+.++++.... ....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 5789999999888999999999999999999999999999999999997410 234455555443332111 0000
Q ss_pred ---HHHHhccHHHHHHHHHHHHHhh---ccC-CC---hHHHHHHHHHHH------h-c--cCCCChHHHHHHHHHhcCCC
Q psy16366 134 ---NIVLSADKNRVKLLKECSKLER---DES-GD---NQLRLTEVYDEL------K-S--IEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 134 ---~~v~~~~~~~~~l~~~~~~l~~---~~~-~~---~~~~l~~v~~el------~-~--~~~~~~~~~~~~~L~~lg~~ 194 (568)
..+.+.. .... ....+.+.. ... .. ...++.++.+.+ . . ....+.+++.+..++..-+.
T Consensus 81 ~~i~~~~q~~-~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 81 RRVGMVFQKP-NPFP-GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hhEEEEecCc-hhcc-ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 0011110 0000 000000000 000 00 112233333332 1 1 24567778877777654333
Q ss_pred c----cCCCch---------HHHHHHhccC--CeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 195 T----IYIPSS---------RVHEIMRTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 195 ~----L~~ePn---------~L~~~l~~~~--~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
. ++|||. ++.++++++. .|||+||||++++..+||+|++|++|+++.+
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 2 889992 4555554432 6999999999999999999999999999865
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=183.03 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=107.7
Q ss_pred eEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HH
Q psy16366 60 IKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VN 134 (568)
Q Consensus 60 I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~ 134 (568)
|+++|+++.|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEE
Confidence 578999999976 789999999999999999999999999999999999743 33444444333321100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHhhccC-C--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 135 IVLSADKN--RVKLLKECSKLERDES-G--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~~~~~-~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.... .....+.......... . ....+..++.+.+. .....+.+++.+..++..-... ++|
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 00100000 0000000000000000 0 00112223333221 1233566777776665433332 889
Q ss_pred Cch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 199 PSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 199 ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
||. ++.++++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 992 444555433 47999999999999999999999999999854
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=185.93 Aligned_cols=189 Identities=20% Similarity=0.278 Sum_probs=114.0
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|.....|..+.+.+.+.++....... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 4689999999988999999999999999999999999999999999996311244455544443322111000 00
Q ss_pred HHHhccH-----HHHHHHHHH-HHHhhcc-----C-CChHHHHHHHHHHHh--------ccC-CCChHHHHHHHHHhcCC
Q psy16366 135 IVLSADK-----NRVKLLKEC-SKLERDE-----S-GDNQLRLTEVYDELK--------SIE-ADAAEPRARRILAGLGF 193 (568)
Q Consensus 135 ~v~~~~~-----~~~~l~~~~-~~l~~~~-----~-~~~~~~l~~v~~el~--------~~~-~~~~~~~~~~~L~~lg~ 193 (568)
.+.+... .....+... ....... . .....++.++.+.+. ... ..+.+++.+..++..-+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 1111100 000000000 0000000 0 000122333333221 122 26777777777665433
Q ss_pred Cc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. ++|||. ++.++++++ +.|||+||||++++..+ ||+|++|++|++.. .|+.+.+
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK-SGDVELA 232 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE-ecCHHHh
Confidence 32 889992 555555543 68999999999999998 89999999999975 5666544
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=182.68 Aligned_cols=186 Identities=15% Similarity=0.193 Sum_probs=111.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|.++|++++|+++++|+++||+|.+||++||+||||||||||+++|+|... |..+.+.+.++++...+...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhC
Confidence 36999999999988899999999999999999999999999999999999743 33444544433322111000
Q ss_pred HHHHHhccHHHH---HHHHHHHHHhh-ccCC-ChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNRV---KLLKECSKLER-DESG-DNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~---~l~~~~~~l~~-~~~~-~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.. ... ...+.. .+.. .... .....+.++.+.+ ......+.+++.+..++..-...
T Consensus 82 i~~~~q~~-~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 82 VAIVPEGR-RVFSRMTVEENL-AMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEEeccCc-ccCCCCcHHHHH-HHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 00000000 000 000000 0000 0000 0011111111111 12234567777777665543332
Q ss_pred cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
++|||. .+.++++ +.+.|||++|||.+++..+||++++|++|+++. .|+.+.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 223 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL-EDTGDA 223 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe-eCCHHH
Confidence 889992 3333332 347899999999999999999999999999975 455443
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=177.85 Aligned_cols=189 Identities=19% Similarity=0.261 Sum_probs=117.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH---HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV---NI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~---~~ 135 (568)
+|+++|+|++..|+.+++++||++.+||..+|+||||+|||||||+|+|.. -|.++.+.+.+.....-..... .+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel--~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL--SPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc--CCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 588999999999999999999999999999999999999999999999974 3566677776655432222211 12
Q ss_pred HHhccHHHHH-H-HHHHHHHhhccC--CC----hHHHHHHHHHHHh-------ccCCCChHHHHHHHHH----hcCCC--
Q psy16366 136 VLSADKNRVK-L-LKECSKLERDES--GD----NQLRLTEVYDELK-------SIEADAAEPRARRILA----GLGFT-- 194 (568)
Q Consensus 136 v~~~~~~~~~-l-~~~~~~l~~~~~--~~----~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~----~lg~~-- 194 (568)
|+.......- + ..+.-.+...+. +. +.......+.... .....++++++|.-|+ .+--.
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 2211111100 0 011111111111 11 1111222222211 1112356666665444 33211
Q ss_pred -c---cCCCch------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 -T---IYIPSS------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 -~---L~~ePn------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++|||. .+.+-+..-+..|++|=||++....+||||+.|++|+++..+.+.+.+
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vl 229 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVL 229 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhc
Confidence 1 789992 233334455799999999999999999999999999999865544443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=181.44 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=109.7
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
+|.++|++++| +++.+|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.+.++.......
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLR 78 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHH
Confidence 37899999999 66789999999999999999999999999999999999643 34455544443332111000
Q ss_pred --HHHHHhccHH--HHHHHHHHHHHhh-ccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 --VNIVLSADKN--RVKLLKECSKLER-DESGDN---QLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 --~~~v~~~~~~--~~~l~~~~~~l~~-~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
+..+.+.... .....+.. .+.. ...... ..++.++.+.+. .....+.+++.+..++..-...
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 79 RQIGMIFQDHHLLMDRTVYDNV-AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred hheEEEecCccccccccHHHHH-HhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 0001110000 00000000 0000 000000 112223333321 1234566777776665543332
Q ss_pred --cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 196 --IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
++|||. .+.+++. ..+.|+|+||||.+++..+||+|++|++|+++.-.|
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccCCC
Confidence 889992 2333333 236899999999999999999999999999875444
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=186.79 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=112.9
Q ss_pred ceEEeeeEEEeCC---------ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc
Q psy16366 59 DIKVENFSLSAKG---------VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 129 (568)
Q Consensus 59 ~I~i~nls~~~~~---------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~ 129 (568)
+|+++|++++|++ +++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5899999999962 479999999999999999999999999999999999743 33444544333332111
Q ss_pred hhH----HHHHHhccH-------HHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHhc--------cCCCChHHHHHHHHH
Q psy16366 130 DSA----VNIVLSADK-------NRVKLLKECSKLER-DESGDNQLRLTEVYDELKS--------IEADAAEPRARRILA 189 (568)
Q Consensus 130 ~~~----~~~v~~~~~-------~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~ 189 (568)
... +..+.+... .....+........ .........+.++.+.+.. ....+.+++++..|+
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 000 000001000 00000000000000 0000011222333333211 133566777777666
Q ss_pred hcCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... |+|||. ++.+++. ..+.|||+||||++++..+||+|++|++|++.. .|+++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 237 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE-RGSTADV 237 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe-cCCHHHH
Confidence 443332 889991 4444443 347899999999999999999999999999974 5666554
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=188.94 Aligned_cols=187 Identities=18% Similarity=0.299 Sum_probs=111.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----HH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----VN 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~~ 134 (568)
+|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|... |..+.+.+.+.++....... +.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheE
Confidence 5899999999998899999999999999999999999999999999999743 33344443332221100000 00
Q ss_pred HHHhccHH--HHHHHHHHHHHh------hcc--CCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 135 IVLSADKN--RVKLLKECSKLE------RDE--SGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 135 ~v~~~~~~--~~~l~~~~~~l~------~~~--~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
.+.+...- .....+.. ... .+. ......++.++.+.+. .....+.+++.+..++..-...
T Consensus 80 ~~~q~~~~~~~~tv~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 80 LLPQHHLTPEGITVRELV-AYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred EecccCCCCCCccHHHHH-HhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 00000000 00000000 000 000 0001112223333221 1234567777776665433322
Q ss_pred --cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 --IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. ++.++++. .+.|||++|||++++.++||+|++|++|++.. .|.++.+
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 225 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA-QGTPEEV 225 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE-EcCHHHh
Confidence 889992 44444433 37899999999999999999999999999875 4555443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=190.24 Aligned_cols=186 Identities=15% Similarity=0.216 Sum_probs=113.5
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---- 129 (568)
.|+++|++++|++ +++|+|+||+|++|+++||+|+||||||||+++|+|... |..+.+.+.+.++....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKY 79 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 4889999999963 369999999999999999999999999999999999643 44555655444442110
Q ss_pred hh----HHHHHHhccH-HHH--HHHHHHHHHhhccC-CC---hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 130 DS----AVNIVLSADK-NRV--KLLKECSKLERDES-GD---NQLRLTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 130 ~~----~~~~v~~~~~-~~~--~l~~~~~~l~~~~~-~~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
.. .+..+++... ... ...+.. .+..... .. ...+..++.+.+. .....+.+++.+..++.
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~tv~e~i-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 80 IRPVRKRIGMVFQFPESQLFEDTVEREI-IFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHHHhheEEEecChHhccchhhHHHHH-HhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 00 0111122110 000 000000 0000000 01 1122223333221 12234666777766655
Q ss_pred cCCCc----cCCCch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... |+|||. ++.++++ ..+.|||+||||++++..+||+|++|++|+++.. |..+.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~-g~~~~ 232 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ-TSPKE 232 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 43322 889992 4555444 3478999999999999999999999999999864 55544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=183.62 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC---CCceEEEE-------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYC------------- 121 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip---~~~~i~~~------------- 121 (568)
.+|.++|++++|+.+.+|+|+||+|.+|+++||+|+||||||||+++|+|...+.| ..+.+.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 36899999999988899999999999999999999999999999999999632112 13444333
Q ss_pred --------eccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCCh-HHHHHHHHHHH-----------hccCCCChH
Q psy16366 122 --------EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDEL-----------KSIEADAAE 181 (568)
Q Consensus 122 --------~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~-~~~l~~v~~el-----------~~~~~~~~~ 181 (568)
.|+......+..+.+... .........+. ..+..+..+.+ ......+.+
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYG-----------LRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHH-----------HHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 332211111111110000 00000000000 01111111111 122345677
Q ss_pred HHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 182 PRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 182 ~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
++.+..++..-+.. |+|||. ++.+++..+ +.|+|+||||++++..+||+|++|++|+++.++.++
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 77776665543332 889992 555555443 479999999999999999999999999999876666
Q ss_pred hHHH
Q psy16366 247 TLFK 250 (568)
Q Consensus 247 ~~~~ 250 (568)
+.|.
T Consensus 233 ~~~~ 236 (252)
T PRK14255 233 QMFL 236 (252)
T ss_pred HHhc
Confidence 6553
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=171.49 Aligned_cols=131 Identities=32% Similarity=0.455 Sum_probs=96.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHhc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSA 139 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~~ 139 (568)
|+++|+++.|++..+|+++||++++||+++|+|+||||||||+++|+|... |..+.+.+.+... +..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~~~-------i~~---- 67 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGSTVK-------IGY---- 67 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCeEE-------EEE----
Confidence 468999999988889999999999999999999999999999999999743 3344443322100 000
Q ss_pred cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhccCCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHH
Q psy16366 140 DKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTT----IYIPSS---------RVHEI 206 (568)
Q Consensus 140 ~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~ 206 (568)
... .+.+++.+..|+..-... ++|||. ++.++
T Consensus 68 ----------------~~~-------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~ 112 (144)
T cd03221 68 ----------------FEQ-------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA 112 (144)
T ss_pred ----------------Ecc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 000 233444444333322222 888992 67778
Q ss_pred HhccCCeEEEEeCCHHHHHhhhceeeEEcCCe
Q psy16366 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKK 238 (568)
Q Consensus 207 l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~ 238 (568)
+++++.|+|+|||+.+++..+||++++|++||
T Consensus 113 l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 113 LKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 88888899999999999999999999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-20 Score=184.62 Aligned_cols=172 Identities=19% Similarity=0.308 Sum_probs=111.2
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC------ceEEEEeccccCCch--
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDD-- 130 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~------~~i~~~~qe~~~~~~-- 130 (568)
+|+++|++++|+++++|+++||+|.+|++++|+||||||||||+++|+|...|..+. ..+.|+.|+......
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC
Confidence 689999999999889999999999999999999999999999999999974332221 134566665432211
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-------hccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL-------KSIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-------~~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
..+...+... ......++.++.+.+ ......+.+++.+..++..-... ++||
T Consensus 84 ~~~~~~~~~~-----------------~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 146 (251)
T PRK09544 84 LTVNRFLRLR-----------------PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDE 146 (251)
T ss_pred hhHHHHHhcc-----------------ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0111100000 000001111222211 12334577777777765543332 8899
Q ss_pred ch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. ++.+++ +.++.|||+||||++++..+||+|++|++ +++. .|+.+.+
T Consensus 147 Pt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~-~g~~~~~ 207 (251)
T PRK09544 147 PTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC-SGTPEVV 207 (251)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe-eCCHHHH
Confidence 91 444444 33478999999999999999999999975 6654 4554443
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=188.73 Aligned_cols=187 Identities=17% Similarity=0.280 Sum_probs=112.6
Q ss_pred ceEEeeeEEEeC---------CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc
Q psy16366 59 DIKVENFSLSAK---------GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD 129 (568)
Q Consensus 59 ~I~i~nls~~~~---------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~ 129 (568)
+|+++|++++|+ ++.+|+|+||+|.+||++||+|+||||||||+++|+|... |..+.+.+.+.++....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 488999999995 3679999999999999999999999999999999999643 34445544433332111
Q ss_pred hhH-------HHHHHhccH-------HHHHHHHHH-HHHhhccCCChHHHHHHHHHHHhc--------cCCCChHHHHHH
Q psy16366 130 DSA-------VNIVLSADK-------NRVKLLKEC-SKLERDESGDNQLRLTEVYDELKS--------IEADAAEPRARR 186 (568)
Q Consensus 130 ~~~-------~~~v~~~~~-------~~~~l~~~~-~~l~~~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~ 186 (568)
... +..+.+... .....+... .....+.......+..++.+.+.. ....+.+++.+.
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv 159 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRI 159 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHH
Confidence 000 000001000 000000000 000000000111223333333211 123466677776
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.++..-+.. |+|||. +|.++.+..+.|||+||||++++..+||++++|++|+++. .|..+.
T Consensus 160 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~ 237 (265)
T TIGR02769 160 NIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQ 237 (265)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHH
Confidence 665443332 889992 4555555457899999999999999999999999999975 455443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=189.87 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=112.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC------CCceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP------SSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip------~~~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+++|+|...|.- ..+.+.+.+.++.......
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4789999999998999999999999999999999999999999999999643210 0455555443332111111
Q ss_pred H----HHHHhccHHH--HHHHHHHHHHhhccC----C----ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 133 V----NIVLSADKNR--VKLLKECSKLERDES----G----DNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 133 ~----~~v~~~~~~~--~~l~~~~~~l~~~~~----~----~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
. ..+.+..... ....+.. ....... . ....+..++.+.+. .....+.+++.+..++..
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIV-LLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHH-hhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 0 0011110000 0000000 0000000 0 01122233333321 123457777777766554
Q ss_pred CC----------Cc---cCCCch---------HH----HHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 192 GF----------TT---IYIPSS---------RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 192 g~----------~~---L~~ePn---------~L----~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
-+ .+ |+|||. ++ .++.++++.|||+||||++++..+||++++|++|+++.. |+
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~-g~ 238 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH-GA 238 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe-cC
Confidence 44 22 889992 34 444444578999999999999999999999999999754 44
Q ss_pred h
Q psy16366 246 F 246 (568)
Q Consensus 246 y 246 (568)
.
T Consensus 239 ~ 239 (272)
T PRK13547 239 P 239 (272)
T ss_pred H
Confidence 3
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-20 Score=184.69 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=108.0
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch---h
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD---S 131 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~---~ 131 (568)
+|.++|++++|+++ ++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.++++...+. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHH
Confidence 37899999999765 79999999999999999999999999999999999743 344455444433321110 0
Q ss_pred H----HHHHHhccHHH----HHHHHHHH-HHhhccCCC--hH-HH-HHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 132 A----VNIVLSADKNR----VKLLKECS-KLERDESGD--NQ-LR-LTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 132 ~----~~~v~~~~~~~----~~l~~~~~-~l~~~~~~~--~~-~~-l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
. +..+.+..... ....+... .+....... .. .. ..++.+.+. .....+.+++.+..++.
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 0 00011110000 00000000 000000000 00 01 012222221 12335677777777665
Q ss_pred cCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 191 LGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.-+.. |+|||. ++.+++ ++.+.|||+||||.+++..+||+|++|++|+++.
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 44333 889991 344444 3337899999999999999999999999999864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=188.96 Aligned_cols=190 Identities=14% Similarity=0.190 Sum_probs=114.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCCc--hh
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEASD--DS 131 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~~--~~ 131 (568)
..+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|...+. |..+.+.+.++.+.... ..
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 34799999999998889999999999999999999999999999999999974331 23455555444332110 00
Q ss_pred H----HHHHHhccHHH-HHHHHHHH---HHhhccCC-ChHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADKNR-VKLLKECS---KLERDESG-DNQLRLTEVYDELK-----------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~~~-~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+..... ....+... ........ ....++.++.+.+. .....+.+++++..++..
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 0 00001100000 00000000 00000000 00112222222111 123457777877777654
Q ss_pred CCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. ++|||. ++.++++.+ +.|||+||||++++..+||+|++|++|+++.. |..+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~ 234 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE-SSTD 234 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 4432 889992 444444433 57999999999999999999999999999864 4433
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-20 Score=190.00 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=116.7
Q ss_pred CCCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCccc---CCCceEEEEeccccCC-c
Q psy16366 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAI---PSSIDLLYCEQEVEAS-D 129 (568)
Q Consensus 54 ~~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~i---p~~~~i~~~~qe~~~~-~ 129 (568)
+..+.+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|...|. |..+.+.+.+..+... .
T Consensus 16 ~~~~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 16 DAAAPAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred cccCcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 33456899999999999999999999999999999999999999999999999974332 2344554433222110 0
Q ss_pred hhH----HHHHHhccHHH-HHHHHHHHH-Hhhcc-CCCh--HHHHHHHHHHHh-----------ccCCCChHHHHHHHHH
Q psy16366 130 DSA----VNIVLSADKNR-VKLLKECSK-LERDE-SGDN--QLRLTEVYDELK-----------SIEADAAEPRARRILA 189 (568)
Q Consensus 130 ~~~----~~~v~~~~~~~-~~l~~~~~~-l~~~~-~~~~--~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~ 189 (568)
... +..+.+..... ....+.... ..... .... ..+..++.+.+. .....+.+++.+..|+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 000 00111100000 000000000 00000 0000 011122222221 1234577777777766
Q ss_pred hcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... |+|||. +|.++|+.+ ..|||+||||++++..+||++++|++|+++.. |..+.+
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~-g~~~~~ 249 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEE-GPTEQL 249 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 543332 889992 555555543 47999999999999999999999999999864 444433
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-20 Score=189.68 Aligned_cols=185 Identities=14% Similarity=0.224 Sum_probs=110.1
Q ss_pred cceEEeeeEEEeCCc-----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC---C-
Q psy16366 58 VDIKVENFSLSAKGV-----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA---S- 128 (568)
Q Consensus 58 ~~I~i~nls~~~~~~-----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~---~- 128 (568)
..|+++|++++|+++ ++|+|+||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++.. .
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccccc
Confidence 358999999999764 49999999999999999999999999999999999743 334444443322210 0
Q ss_pred -chhH----HHHHHhccH-HHHH-HHHHHHHHhhc-cCCCh---HHHHHHHHHHHh--------ccCCCChHHHHHHHHH
Q psy16366 129 -DDSA----VNIVLSADK-NRVK-LLKECSKLERD-ESGDN---QLRLTEVYDELK--------SIEADAAEPRARRILA 189 (568)
Q Consensus 129 -~~~~----~~~v~~~~~-~~~~-l~~~~~~l~~~-~~~~~---~~~l~~v~~el~--------~~~~~~~~~~~~~~L~ 189 (568)
.... +..+.+... .... ...+.-.+... ..... ..++.++.+.+. .....+.+++.+..++
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la 162 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA 162 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 0000 000111100 0000 00000000000 00000 112233333221 1223567777777665
Q ss_pred hcCCCc----cCCCch---------H----HHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcC
Q psy16366 190 GLGFTT----IYIPSS---------R----VHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKG 244 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~----L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g 244 (568)
..-+.. ++|||. + |.++.+..+.|||+||||++++..+||+|++|++|+++.++.
T Consensus 163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 433322 889991 3 444444457899999999999999999999999999986543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=190.25 Aligned_cols=188 Identities=21% Similarity=0.277 Sum_probs=112.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----H
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----V 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----~ 133 (568)
..|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|... |..+.+.+.+.++....... +
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhhe
Confidence 36899999999988899999999999999999999999999999999999643 33444444332221100000 0
Q ss_pred HHHHhccHH--HHHHHHHHHH-Hhhc----c-CC-ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 134 NIVLSADKN--RVKLLKECSK-LERD----E-SG-DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 134 ~~v~~~~~~--~~~l~~~~~~-l~~~----~-~~-~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
..+.+.... .....+.... .... . .. ....+..++.+.+. .....+.+++.+..|+..-...
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 167 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSR 167 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 000000000 0000000000 0000 0 00 01112223333221 1234577777777665443332
Q ss_pred --cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 --IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 --L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .|.++.+..+.|||+||||++++..+||+|++|++|+++. .|..+.
T Consensus 168 lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~-~~~~~~ 234 (265)
T PRK10575 168 CLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA-QGTPAE 234 (265)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHH
Confidence 889992 3444434447899999999999999999999999999975 344443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=187.99 Aligned_cols=190 Identities=17% Similarity=0.259 Sum_probs=113.3
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC---CceEEEEeccccCC--chh
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS---SIDLLYCEQEVEAS--DDS 131 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~---~~~i~~~~qe~~~~--~~~ 131 (568)
..+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|...+.|. .+.+.+.++++... ...
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 3479999999999988999999999999999999999999999999999996432231 44554444333211 000
Q ss_pred H----HHHHHhccHHH-HHHHHHHH---HHhhccCC-ChHHHHHHHHHHH-----------hccCCCChHHHHHHHHHhc
Q psy16366 132 A----VNIVLSADKNR-VKLLKECS---KLERDESG-DNQLRLTEVYDEL-----------KSIEADAAEPRARRILAGL 191 (568)
Q Consensus 132 ~----~~~v~~~~~~~-~~l~~~~~---~l~~~~~~-~~~~~l~~v~~el-----------~~~~~~~~~~~~~~~L~~l 191 (568)
. +..+.+...-. ....+... ........ .......++.+.+ ......+.+++.+..|+..
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART 163 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence 0 00000000000 00000000 00000000 0011122222211 1123456777777766554
Q ss_pred CCCc----cCCCc---------hHHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 192 GFTT----IYIPS---------SRVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 192 g~~~----L~~eP---------n~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
-+.. |+||| .++.+++..+ +.|||++|||.+++..+||+|++|++|+++.. |..+
T Consensus 164 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 233 (253)
T PRK14261 164 LAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEF-DKTT 233 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEc-CCHH
Confidence 3332 88999 2555555443 47999999999999999999999999999864 4443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=192.54 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=114.3
Q ss_pred ceEEeeeEEEeCC-----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC--c--
Q psy16366 59 DIKVENFSLSAKG-----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS--D-- 129 (568)
Q Consensus 59 ~I~i~nls~~~~~-----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~--~-- 129 (568)
.|+++|++++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|... |..+.+.+.++++... .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~ 79 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKK 79 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccch
Confidence 4899999999964 469999999999999999999999999999999999743 4455555555443210 0
Q ss_pred hhH----HHHHHhccH-HHH--HHHHHHHHHhhccCC-C---hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHh
Q psy16366 130 DSA----VNIVLSADK-NRV--KLLKECSKLERDESG-D---NQLRLTEVYDELK--------SIEADAAEPRARRILAG 190 (568)
Q Consensus 130 ~~~----~~~v~~~~~-~~~--~l~~~~~~l~~~~~~-~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~ 190 (568)
... +..+++... ... ...+.. .+.....+ . ...+..++++.+. .+...+.+++.+..|+.
T Consensus 80 ~~~~~~~ig~v~q~~~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 80 LKPLRKKVGIVFQFPEHQLFEETVEKDI-CFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHHHhhEEEEeeCchhhhhhhhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 000 111111110 000 010100 00000000 1 1123333443322 12234667777766655
Q ss_pred cCCCc----cCCCch---------HHH----HHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVH----EIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~----~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-... ++|||. ++. ++.++.+.|||+||||.+++..+||||++|++|+++. .|+.+.
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~-~g~~~~ 232 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL-QGTPRE 232 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 43332 889992 333 3334457899999999999999999999999999985 455544
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-20 Score=186.50 Aligned_cols=187 Identities=15% Similarity=0.241 Sum_probs=110.8
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc----------
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD---------- 129 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~---------- 129 (568)
|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+++|+|... |..+.+.+.++++...+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccc
Confidence 578999999988899999999999999999999999999999999999643 34445544333331100
Q ss_pred -h--hH----HHHHHhccHHH--HHHHHHHHH--Hh--hccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 130 -D--SA----VNIVLSADKNR--VKLLKECSK--LE--RDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 130 -~--~~----~~~v~~~~~~~--~~l~~~~~~--l~--~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
. .. +..+.+..... ..+.+.... .. ............++.+.+. .....+.+++.+..++
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHH
Confidence 0 00 00000000000 000000000 00 0000000112222222221 1223466677776665
Q ss_pred hcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-... ++|||. ++.+++ ++.+.|+|+||||++++..+||++++|++|+++. .|+++.+
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 234 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEI 234 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 443322 889992 343433 3347899999999999999999999999999975 4665544
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=183.18 Aligned_cols=186 Identities=13% Similarity=0.178 Sum_probs=109.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~ 135 (568)
+|+++|++++|+++++|+++||+|.+|+++||+||||||||||+++|+|... |..+.+.+.+.++....... +..
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEE
Confidence 4789999999988899999999999999999999999999999999999743 33444443332221100000 000
Q ss_pred HHhccHH--HHHHHHHHHHHhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 136 VLSADKN--RVKLLKECSKLERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 136 v~~~~~~--~~~l~~~~~~l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+.+.... .....+............ ......++.+.+. .+...+.+++.+..++..-+.. ++||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 158 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE 158 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0000000 000000000000000000 0112222333221 1233567777776665443332 8899
Q ss_pred ch---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 200 SS---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 200 Pn---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|. ++.++++ +.+.|+|+||||++++.. ||+|++|++|++... |..+.
T Consensus 159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~-~~~~~ 218 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLAD-GAAAE 218 (236)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEe-CCHHH
Confidence 91 4444443 346899999999999975 999999999999754 55443
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=186.96 Aligned_cols=184 Identities=13% Similarity=0.220 Sum_probs=110.6
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC---CCceEEEEeccccCCc--hhH-
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP---SSIDLLYCEQEVEASD--DSA- 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip---~~~~i~~~~qe~~~~~--~~~- 132 (568)
.|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||+++|+|...+.| ..+.+.+.++++.... ...
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 3789999999988899999999999999999999999999999999999743112 2455544443332100 000
Q ss_pred ---HHHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-----------ccCCCChHHHHHHHHHhcC
Q psy16366 133 ---VNIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK-----------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 133 ---~~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-----------~~~~~~~~~~~~~~L~~lg 192 (568)
+..+.+.... .....+.... ........ ...+..++.+.+. .....+.+++.+..|+..-
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 0000000000 0000000000 00000000 0112222222221 1233567777777665543
Q ss_pred CCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 193 FTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
+.. ++|||. ++.++++++ +.|||+||||++++..+||++++|++|++..+
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC 228 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe
Confidence 332 889992 455555443 57999999999999999999999999999865
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=183.26 Aligned_cols=184 Identities=18% Similarity=0.247 Sum_probs=109.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----HH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA-----VN 134 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~-----~~ 134 (568)
|+++|++++|+++++|+++||+|.+|+++||+|||||||||||++|+|... |..+.+.+.++++...+... +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 568999999988899999999999999999999999999999999999743 33445544443332111100 11
Q ss_pred HHHhccHHH--HHHHHHHHHHhhcc-CCChHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 135 IVLSADKNR--VKLLKECSKLERDE-SGDNQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 135 ~v~~~~~~~--~~l~~~~~~l~~~~-~~~~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
.+.+..... ....+......... ......++.++.+.+. .....+.+++.+..++..-+.. ++||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 111100000 00000000000000 0001112222222221 1223566777776665443332 8899
Q ss_pred ch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCCh
Q psy16366 200 SS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNF 246 (568)
Q Consensus 200 Pn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y 246 (568)
|. .+.+++++ .+.|||+||||.+++..+||+|++|++|++.. .|+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTA 216 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCH
Confidence 92 33333332 46899999999999999999999999999875 3443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 568 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-25 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-16 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-14 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-24 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 5e-16 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-13 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-24 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-16 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-13 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-12 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-12 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-11 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-10 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-10 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-10 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-10 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-10 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-10 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 9e-10 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 5e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 5e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 5e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-08 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 9e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-07 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 4e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 7e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 7e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 2e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-06 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 7e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-06 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-06 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-05 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-05 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 7e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 246 bits (630), Expect = 1e-71
Identities = 114/575 (19%), Positives = 197/575 (34%), Gaps = 112/575 (19%)
Query: 54 DDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR---AL 110
+D D+ FSL+ L + L++ RRYG+ GPNG GK+TL+R IA
Sbjct: 430 EDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF 489
Query: 111 AIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD 170
+Y E +++ + +D + + + E ++ + +
Sbjct: 490 PTQEECRTVYVEHDIDGTH---------SDTSVLDFVFESGVGTKEA-------IKDKLI 533
Query: 171 ELKSIEADAAEP--------RARRILAGLGFT----------TIYIPSSRVH---EIMRT 209
E + A P + + LA T ++ + V + T
Sbjct: 534 EFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
Query: 210 WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQE- 268
T + +SHD FL+N+C II+ + KL YKGNFT F K + E
Sbjct: 594 CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEF 653
Query: 269 ---------------KQIREMKSQGMSKEKAER-QHSHKALKEQARKRV----------- 301
K I ++ + + Q + + R+
Sbjct: 654 KFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKS 713
Query: 302 -----------------------------QKDDDDEPKELLEKPREYIVKFRFPNPPYLP 332
Q L + P EYI
Sbjct: 714 TLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRF---QTGED 770
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
+ + + + K+ R+A + K+T+ L N G
Sbjct: 771 RETMDRANRQINENDAEAM-NKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829
Query: 393 L---------RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL 442
+ + G+ + + + D F L ++ M GL
Sbjct: 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889
Query: 443 -PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
P IR LSGGQK ++ LA T P +++LDEPTN LD +S+ AL++A+K ++G
Sbjct: 890 DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEG 949
Query: 502 GVILVSHDERLIRETDCELWALEKKNIRKFNGDFD 536
GVI+++H + E+WA++ + ++
Sbjct: 950 GVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-39
Identities = 64/287 (22%), Positives = 104/287 (36%), Gaps = 5/287 (1%)
Query: 256 KRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEK 315
+ E + + E+ Q + + + +
Sbjct: 354 LKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFR 413
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIG 374
R PN L + F G K+LL K L R + GPNG G
Sbjct: 414 KRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCG 473
Query: 375 KSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434
KST + + R + +H + D + +++ + E +
Sbjct: 474 KSTLMRAIANGQVDG---FPTQEECRTV-YVEHDIDGTHSDTSVLDFVFESGVGTKEAIK 529
Query: 435 RQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+L FG +PI LSGG K ++ALA L N DIL+LDEPTN+LD ++ L
Sbjct: 530 DKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN 589
Query: 495 AIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541
+ I +SHD + + E +RK+ G+F ++ +K
Sbjct: 590 YLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-34
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 73/342 (21%)
Query: 196 IYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241
Y PSS +V ++R K +LVV HD + L+ + D+IH+ ++
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLS-DVIHV----VYG 303
Query: 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRV 301
G + +F + K R ++ + + E R R
Sbjct: 304 EPGVYGIF----------------SKPKGTRNGINEFLQGYLKD---------ENVRFRP 338
Query: 302 QKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDM 361
+ + E ++ RE +V++ Y G LE +
Sbjct: 339 YEIRFTKLSERVDVERETLVEYPRLVKDY-----------------GSFKLEVEPGEIRK 381
Query: 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY 421
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE--WDLTVAYKPQYI--KAEYEGTVYEL 437
Query: 422 LMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
L K+ + + + L G+ DLSGG+ RVA+A L + DI +LD
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-EDLSGGELQRVAIAATLLRDADIYLLD 496
Query: 479 EPTNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRET 516
EP+ LD+E A++ AI++ ++V HD +I
Sbjct: 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 49/194 (25%), Positives = 72/194 (37%), Gaps = 26/194 (13%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
D Y G + + V +VGPNG GK+T + +L G+L PN E S
Sbjct: 96 DCVHRY-GVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 400 RIGKFDQHSGEHLFP----------------DDTP---CEYLMKLFNLPYEKSR--RQLG 438
I F + ++ F D P + +L E + +
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
L + + LSGG+ RVA+A L DEP++ LDI +A I
Sbjct: 215 ELELEN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 497 -KNYQGGVILVSHD 509
N V++V HD
Sbjct: 274 LANEGKAVLVVEHD 287
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 47/225 (20%), Positives = 73/225 (32%), Gaps = 35/225 (15%)
Query: 36 ENFTVSQSSKASSKRSTVDDNSVDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPN 94
EN +K S D + VE L G +I G G+VGPN
Sbjct: 332 ENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPN 391
Query: 95 GHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLE 154
G GKTT ++ +A + P+ + + I + +LL SK++
Sbjct: 392 GIGKTTFVKMLA--GVEEPTEGKVEWDLTVAYKPQ----YIKAEYEGTVYELL---SKID 442
Query: 155 RDESGDNQLRLTEVYDELKSIEADAAEP------------------RARRIL------AG 190
+ N TE+ L I+ R I A
Sbjct: 443 SSKLNSNF-YKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501
Query: 191 LGFTTIYIPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
L S + +M +KT LVV HD ++ + +I +
Sbjct: 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 85/526 (16%), Positives = 158/526 (30%), Gaps = 130/526 (24%)
Query: 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-------TR 108
N + + + G+ GLVG NG GK+T L+ +A R
Sbjct: 74 NLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 109 ALAIPSSIDLL----------YCEQEVEASDDSAVNI-----VLSADKNRVKLLKECSKL 153
P +++ Y + +E + + + A K V+ + E KL
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 154 ERDESGDNQLRLTEVYDELKSIE----------------------ADAAEPRARRILAGL 191
++ + + L+ +E + E
Sbjct: 194 RMEK---SPEDVKRYIKILQ-LENVLKRDIEKLSGGELQRFAIGMSCVQEAD-------- 241
Query: 192 GFTTIYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMK 237
+Y+ PSS +I+R+ K ++ V HD S L+ + + +
Sbjct: 242 ----VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
Query: 238 KLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQA 297
Y G TL + +E + ++
Sbjct: 298 PSVY--GVVTLPASV-----REGINIFLDGHIPAENLRF--------------------R 330
Query: 298 RKRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNF 357
+ +Q D ++L + G +L
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPS-----------------LKKTQGDFVLNVEEG 373
Query: 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDT 417
+ ++G NG GK+T + LL G L P++G+ P+L + Q T
Sbjct: 374 EFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD--IPKLNVSMKPQKIA--PKFPGT 429
Query: 418 PCEYLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474
+ K + + Q + + + LSGG+ RVA+ DI
Sbjct: 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-QHLSGGELQRVAIVLALGIPADI 488
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRET 516
++DEP+ LD E ++ I+ + +V HD +
Sbjct: 489 YLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 6e-30
Identities = 68/342 (19%), Positives = 113/342 (33%), Gaps = 69/342 (20%)
Query: 196 IYI---PSS--------RVHEIMRTWK--KTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242
+YI PSS + + +R K ++VV HD L+ + I + + Y
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY- 217
Query: 243 KGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQ 302
G + K A R + LK
Sbjct: 218 -GRVS---------------------------------KSYAARVGINNFLKGYLPAENM 243
Query: 303 KDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME 362
K DE K +L++ + + G L N
Sbjct: 244 KIRPDEIKFMLKEVSDLDLSKDLKTKMKWT---------KIIKKLGDFQLVVDNGEAKEG 294
Query: 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL 422
+ ++GPNGIGK+TF +L GE+T ++G + + + Q D T +YL
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITADEGSVTP-EKQILSYKPQRI--FPNYDGTVQQYL 351
Query: 423 MKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478
S L + DLSGG+ ++ +A D+ +LD
Sbjct: 352 ENASKDALSTSSWFFEEVTKRLNLHRLLESNV-NDLSGGELQKLYIAATLAKEADLYVLD 410
Query: 479 EPTNNLDIESIDALAEAIKNYQ----GGVILVSHDERLIRET 516
+P++ LD+E +A+AIK ++ HD +
Sbjct: 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYI 452
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 31/197 (15%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESR---VALVGPNGIGKSTFLNLLKGELTPNKGE---- 392
+V Y FGL + ++G NG+GK+T L +L GE+ PN G+
Sbjct: 4 EVIHRYKVNGF----KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK 59
Query: 393 ------LRKSPRLRIGKFDQHSGEHLFP-------DDTPCEYLMKLFNL---PYEKSRRQ 436
L++ I + + + + ++L N ++ ++
Sbjct: 60 VGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 437 LGMFGLPSYAHTI--PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+ L + + LSGG R+ +A L D+ I D+P++ LD+ +A+
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 495 AIKNYQGG--VILVSHD 509
AI+ VI+V HD
Sbjct: 180 AIRELLKNKYVIVVDHD 196
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 40/222 (18%), Positives = 60/222 (27%), Gaps = 47/222 (21%)
Query: 45 KASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRH 104
K S D +K +L N + G G++GPNG GKTT R
Sbjct: 255 KEVSDLDLSKDLKTKMKWTKIIKKLGDFQL-VVDNGEAKEGEIIGILGPNGIGKTTFARI 313
Query: 105 IATRALAIPSS-------IDLLYCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDE 157
+ L Y Q + + D V L +D
Sbjct: 314 LV--GEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYL-------------ENASKDA 358
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRA------RRI---LAGLGFTTIYI---PSS---- 201
+ EV L + +++ +Y+ PSS
Sbjct: 359 LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 202 ----RV----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
V + R K ++ HD S + I II
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 35/215 (16%)
Query: 326 PNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385
P ++ L + GK +L+K+++ + + L G NG GK+T LN+L
Sbjct: 12 GLVPRGSHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70
Query: 386 LTPNKGELR-------------KSPRLRIGKFDQHSGEHLFPDDTPCEYLM-------KL 425
G + ++ R IG E + + ++ +
Sbjct: 71 EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV 130
Query: 426 FNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
+ ++ R + L + G+ + A I LS G+K RV +A + P +LILDEP
Sbjct: 131 YQDIDDEIRNEAHQLLKLVGMSAKAQQ-YIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 482 NNLDIES-------IDALAEAIKNYQGGVILVSHD 509
LD + +D+L+++ +I V+H
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLA--MIYVTHF 222
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 39 TVSQSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGK 98
+ SS + + I+++ +G + + QIA G ++ L G NG GK
Sbjct: 2 SSHHHHHHSSGLVPRGSHML-IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGK 60
Query: 99 TTLLRHIATRALAIPSS 115
TTLL + A +S
Sbjct: 61 TTLLNILN--AYEPATS 75
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 78/343 (22%), Positives = 124/343 (36%), Gaps = 75/343 (21%)
Query: 196 IYI---PSS--------RVHEIMRTWK---KTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241
Y PSS +R K++LVV HD + L+ + DIIH+
Sbjct: 179 FYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLS-DIIHV------- 230
Query: 242 YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALK-EQARKR 300
+Y E + + SQ + LK E R R
Sbjct: 231 ----------VY-------------GEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR 267
Query: 301 VQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLD 360
+ + E +E RE +V + G LE +
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYP-----------------RLVKDYGSFRLEVEPGEIK 310
Query: 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 420
+ +VGPNGIGK+TF+ +L G P +G++ L + Q+ + T E
Sbjct: 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE--WDLTVAYKPQYI--KADYEGTVYE 366
Query: 421 YLMKLFNLPYEKSRRQ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
L K+ + + L G+ +LSGG+ RVA+A L + DI +L
Sbjct: 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREV-NELSGGELQRVAIAATLLRDADIYLL 425
Query: 478 DEPTNNLDIES----IDALAEAIKNYQGGVILVSHDERLIRET 516
DEP+ LD+E A+ ++ + ++V HD +I
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 468
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 97.7 bits (244), Expect = 1e-21
Identities = 49/194 (25%), Positives = 70/194 (36%), Gaps = 26/194 (13%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399
D Y G + + V +VGPNG GKST + +L G+L PN S
Sbjct: 26 DCVHRY-GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDG 84
Query: 400 RIGKFD---------QHSGEHLFPD------DTPCEYLMKLFNLPYEKSRRQ------LG 438
I F + + P D + + +K+ +
Sbjct: 85 VIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-- 496
L + I+ LSGG+ RVA+A L N DEP++ LDI A AI
Sbjct: 145 ALELENVLER-EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 497 -KNYQGGVILVSHD 509
V++V HD
Sbjct: 204 LSEEGKSVLVVEHD 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-- 391
L + ++ F Y L +++NF L+ +A++G NG GKST L+LL G P +G
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYL--------MKLFNLP----YEKSRRQLGM 439
E+ + IG Q P + + F P Y+ + + L
Sbjct: 63 EVYQ----SIGFVPQ---FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY 115
Query: 440 FGLPSYAHTIPIRDLSGGQKARV----ALAELTLNNPDILILDEPTNNLD----IESIDA 491
L A LSGGQ+ + A+A + +++LDEPT+ LD +
Sbjct: 116 LNLTHLAKR-EFTSLSGGQRQLILIARAIA----SECKLILLDEPTSALDLANQDIVLSL 170
Query: 492 LAEAIKNYQGGVILVSHD 509
L + ++ V+ +H
Sbjct: 171 LIDLAQSQNMTVVFTTHQ 188
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ VEN LF N + G ++G NG GK+TLL +
Sbjct: 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLL 52
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 18/175 (10%)
Query: 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR------KSPRLRI 401
K +LE++ ++ + V GPNGIGK+T L + L P KGE+ + +I
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKI 80
Query: 402 GKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSR--RQLGMFGLPSYAHTIPIRDLSG 456
+ + + +YL L+ + K+ L + + +LS
Sbjct: 81 FFLPEEII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK--KLGELSQ 136
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508
G RV LA L N +I +LD+P +D +S + ++I +G VI+ S
Sbjct: 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 4e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 60 IKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
+++ + S + + I G GPNG GKTTLL+ I+T P +
Sbjct: 11 LEIRDLS---VGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST--YLKPLKGE 65
Query: 118 LLYCEQEVE 126
++Y +
Sbjct: 66 IIYNGVPIT 74
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+L + ++ + Y G L+ +N + A++G NG+GKST G L P+ G +
Sbjct: 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 394 RKSPRLRIGKFDQHSGEHL------------FPDD-----TPCE---YLMKLFNLPYEKS 433
K +S + + PD+ + + + LP ++
Sbjct: 66 LFD-----NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
Query: 434 RRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
R++ L G+ LS GQK RVA+A + + P +LILDEPT LD +
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 490 DALAEAIK--NYQGG--VILVSHD 509
+ + + + G +I+ +HD
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHD 203
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 7e-07
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL 118
+KVE + + + G N+ I G ++G NG GK+TL ++ + PSS +
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFN--GILKPSSGRI 65
Query: 119 LYCEQEVEASDDSAVNI 135
L+ + ++ S + +
Sbjct: 66 LFDNKPIDYSRKGIMKL 82
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 9e-24
Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 19/186 (10%)
Query: 338 LHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L +V G + LE +N ++ E +V ++GPNG GK+T L + G L P G +
Sbjct: 4 LKNVGITLSGKGYERFSLENINLEVNGE-KVIILGPNGSGKTTLLRAISG-LLPYSGNIF 61
Query: 395 ------KSPRLRIGKFDQHSGEHLFP----DDTPCEYLMKLFNLPYEKSRRQLGMFGLP- 443
+ R I + D +L L + L L
Sbjct: 62 INGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIV--YLYEELKGLDRDLFLEMLKALKLGE 119
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV 503
LS GQ V + + P+I+ LDEP N+D ++ IK Y
Sbjct: 120 EILRRKL-YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG 178
Query: 504 ILVSHD 509
ILV+H+
Sbjct: 179 ILVTHE 184
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I+++N S N NL++ +G + ++GPNG GKTTLLR I+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAIS 51
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-23
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 23/182 (12%)
Query: 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-------KSP-- 397
G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G + + P
Sbjct: 26 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 85
Query: 398 -RLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ----LGMFGLPSYAHTI 449
R I + +G + + EYL + + + GL
Sbjct: 86 VRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD- 142
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VILV 506
+ S G ++ +A + NP + ILDEPT+ LD+ + + + +K +++
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 507 SH 508
SH
Sbjct: 203 SH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
+ V++ E+ + +I G +GL+GPNG GKTT LR I+T L PSS
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSS 69
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 34/201 (16%)
Query: 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392
V+ L DV L ++ + + LVGPNG GKST L + G +T KG
Sbjct: 2 SIVMQLQDV-----AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGS 55
Query: 393 LR--------KSPR---LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR---RQLG 438
++ S L Q P TP + + L ++ G
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQ---QTPPFATPVWHYLTLHQHDKTRTELLNDVAG 112
Query: 439 MFGLPSYAHTIPIRDLSGGQKARVALA-------ELTLNNPDILILDEPTNNLDI---ES 488
L LSGG+ RV LA +L+LDEP N+LD+ +
Sbjct: 113 ALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171
Query: 489 IDALAEAIKNYQGGVILVSHD 509
+D + A+ +++ SHD
Sbjct: 172 LDKILSALSQQGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 67 LSAKGV---ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + V + ++ +G LVGPNG GK+TLL +A
Sbjct: 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-22
Identities = 56/207 (27%), Positives = 87/207 (42%), Gaps = 49/207 (23%)
Query: 338 LHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
+ +V+ + G K LE V+ ++ + + G G GKST L ++ G + P G++
Sbjct: 5 VVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64
Query: 394 R--------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF-------------NL--PY 430
R IG Q +P+D + F N
Sbjct: 65 LYDGERKKGYEIRRNIGIAFQ------YPED-------QFFAERVFDEVAFAVKNFYPDR 111
Query: 431 EKSRR---QLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + GL S+ +P LSGG+K RVA+A + ++ PDILILDEP LD
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPF-FLSGGEKRRVAIASVIVHEPDILILDEPLVGLD 170
Query: 486 IESIDALAEAIKNYQGG---VILVSHD 509
E L ++ ++ VIL+SHD
Sbjct: 171 REGKTDLLRIVEKWKTLGKTVILISHD 197
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 59 DIKVENFSLS-AKGVELFHNA----NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIP 113
I+V N S +G L A +L I G + G G GK+TLL+ +A L P
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA--GLIEP 59
Query: 114 SS 115
+S
Sbjct: 60 TS 61
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 4e-18
Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 41/215 (19%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNKGE 392
+L ++ G ++L + ++ + V+++G +G GKST L +L G L P +G+
Sbjct: 3 EILRAENIKKVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGK 60
Query: 393 L------------RKSPRLR---IG-KFDQHSGEHLFPDDTPCEYLMKLFNLP------- 429
+ ++ LR +G F H +L P+ T E ++ +P
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFH---YLIPELTALENVI----VPMLKMGKP 113
Query: 430 ----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
E+ L GL P +LSGG++ RVA+A N P +L DEPT NLD
Sbjct: 114 KKEAKERGEYLLSELGLGDKLSRKP-YELSGGEQQRVAIARALANEPILLFADEPTGNLD 172
Query: 486 IESIDALAEAIK--NYQGG-VILVSHDERLIRETD 517
+ + + N G +++V+H+ L T
Sbjct: 173 SANTKRVMDIFLKINEGGTSIVMVTHERELAELTH 207
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 82.5 bits (205), Expect = 5e-18
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 44/198 (22%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELT 387
+L V F Y + +L ++F S +A GP+G GKST +LL GE+T
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 388 PNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGM 439
+ + ++ R +IG Q S + T E NL Y + + L
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDS--AIM-AGTIRE------NLTYGLEGDYTDEDLWQ 111
Query: 440 FGLPSYAHTIPIRD---------------LSGGQKARVALAELTLNNPDILILDEPTNNL 484
++A + + + +SGGQ+ R+A+A L NP IL+LDE T +L
Sbjct: 112 VLDLAFARSF-VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASL 170
Query: 485 DIES---I-DALAEAIKN 498
D ES + AL +K
Sbjct: 171 DSESESMVQKALDSLMKG 188
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-16
Identities = 61/235 (25%), Positives = 90/235 (38%), Gaps = 70/235 (29%)
Query: 332 PPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
P + G ++ F YP +L+ +N + VALVG +G GKST + L++
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 387 TPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435
P G + + R IG Q LF T E N+
Sbjct: 441 DPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP--VLF-ATTIAE------NI------- 484
Query: 436 QLGMFGLP-------------SYAHTIPIRDL---------------SGGQKARVALAEL 467
+G + A+ I L SGGQK R+A+A
Sbjct: 485 ---RYGREDVTMDEIEKAVKEANAYDF-IMKLPHQFDTLVGERGAQLSGGQKQRIAIARA 540
Query: 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
+ NP IL+LDE T+ LD ES + A+ + G I+++H RL +R D
Sbjct: 541 LVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAH--RLSTVRNADV 593
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-15
Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 50/233 (21%)
Query: 325 FPNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ P + G V F YP +L+ ++ + +ALVG +G GKST +
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 380 NLL-------KGELTPNKGELR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
LL G + + E++ + R ++G Q LF D + E N+
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP--ILF-DCSIAE------NI 1127
Query: 429 PYEKSRRQLGM--------------F--GLPS-YAHTIPIR--DLSGGQKARVALAELTL 469
Y + R + F LP Y + + LSGGQK R+A+A +
Sbjct: 1128 AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187
Query: 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
P IL+LDE T+ LD ES + EA+ + G I+++H RL I+ D
Sbjct: 1188 RQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH--RLSTIQNADL 1238
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 4e-16
Identities = 66/233 (28%), Positives = 91/233 (39%), Gaps = 68/233 (29%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVA 366
+L+ +E + G +VTF YPG +V L +N + VA
Sbjct: 320 AILDSEQEK------DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVA 373
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPD 415
LVG +G GKST +L+ ++G + S R ++ Q+ HLF +
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLF-N 430
Query: 416 DTPCEYLMKLFNLPYEKSRRQLGMFGLPS-----------YAH-----------TIPIRD 453
DT N+ Y S YA TI I +
Sbjct: 431 DTVAN------NIAY-------ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI-IGE 476
Query: 454 ----LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
LSGGQ+ R+A+A L + ILILDE T+ LD ES I AL E KN
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 9e-16
Identities = 71/226 (31%), Positives = 93/226 (41%), Gaps = 54/226 (23%)
Query: 311 ELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGG-KVLLEKVNFGLDMESRVA 366
L++ E N Y V G + DVTF Y G K L V+F + VA
Sbjct: 320 GLMDLETER------DNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVA 373
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGEL-----------RKSPRLRIGKFDQHSGEHLFPD 415
LVG +G GKST NL + G + + R Q+ HLF +
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV--HLF-N 430
Query: 416 DTPCEYLMKLFNLPY----EKSRRQLGM---------F--GLPSYAHTIPIRD----LSG 456
DT N+ Y E +R Q+ F +P T+ I + LSG
Sbjct: 431 DTIAN------NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV-IGENGTSLSG 483
Query: 457 GQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
GQ+ RVA+A L + +LILDE T+ LD ES I AL E KN
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 43/210 (20%)
Query: 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL-------KGELTPNKGE 392
+V F Y G+ L+ V+F + +ALVGP+G GKST L LL G + + +
Sbjct: 58 NVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117
Query: 393 LR----KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-----------EKSRR-Q 436
+ S R IG Q + LF +DT + N+ Y ++
Sbjct: 118 ISQVTQASLRSHIGVVPQDT--VLF-NDTIAD------NIRYGRVTAGNDEVEAAAQAAG 168
Query: 437 LGMF--GLPS-YAHTIPIRDL--SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDA 491
+ P Y + R L SGG+K RVA+A L P I++LDE T+ LD + A
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 492 LAEAIKNYQGG--VILVSHDERL--IRETD 517
+ ++ I+V+H RL + D
Sbjct: 229 IQASLAKVCANRTTIVVAH--RLSTVVNAD 256
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 3e-15
Identities = 42/220 (19%), Positives = 74/220 (33%), Gaps = 45/220 (20%)
Query: 332 PPPVLGLHDVT--FGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN 389
+L ++ FG L+ V+ ++ ++GPNG GKST +N++ G L +
Sbjct: 4 TMEILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 390 KGELR--------KSPRLRIGK-----FDQHSGEHLFPDDT-----------PCEYLMKL 425
+G + K P F Q + T P E +
Sbjct: 61 EGRVYFENKDITNKEPAELYHYGIVRTF-QTP--QPLKEMTVLENLLIGEICPGESPLNS 117
Query: 426 FNLP---------YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI 476
EK+ + L L +LSGGQ V + + NP +++
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIV 176
Query: 477 LDEPT---NNLDIESIDALAEAIKNYQGGVILVSHDERLI 513
+DEP I +K +++ H ++
Sbjct: 177 MDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 52/224 (23%)
Query: 335 VLGLHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-TPNK 390
++ L +VT Y G+ + L+ VN + V+++GP+G GKST LN++ G L P +
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTE 59
Query: 391 GE------------------LRKSPRLRIG----KFDQHSGEHLFPDDT-------PCEY 421
GE +R R +IG +F +L P T P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIR---RDKIGFVFQQF------NLIPLLTALENVELPLIF 110
Query: 422 LMKLFNLPYEKSRR---QLGMFGLPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477
+ E+ +R L M L +A+ P LSGGQ+ RVA+A NNP I++
Sbjct: 111 KYRGAMSGEERRKRALECLKMAELEERFANHKP-NQLSGGQQQRVAIARALANNPPIILA 169
Query: 478 DEPTNNLDIESIDALAEAIK--NYQGG--VILVSHDERLIRETD 517
D+PT LD ++ + + + +K N + G V++V+HD + R +
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 8e-14
Identities = 53/232 (22%), Positives = 84/232 (36%), Gaps = 80/232 (34%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
++ F Y P V+L+ +N + + +VG +G GKST L+
Sbjct: 10 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------------- 55
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS-RRQLGM---------------- 439
R + +G+ L D + L + RRQ+G+
Sbjct: 56 QRF----YIPENGQVLI-DGHD----LALADP---NWLRRQVGVVLQDNVLLNRSIIDNI 103
Query: 440 -FGLP-------------SYAHTIPIRDLSGG---------------QKARVALAELTLN 470
P + AH I +L G Q+ R+A+A +N
Sbjct: 104 SLANPGMSVEKVIYAAKLAGAHDF-ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162
Query: 471 NPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL--IRETDC 518
NP ILI DE T+ LD ES + + G VI+++H RL ++ D
Sbjct: 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAH--RLSTVKNADR 212
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
DI N F + N NL I G G+VG +G GK+TL
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTL 51
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 2e-13
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 35/170 (20%)
Query: 365 VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSPRLR-IGKFDQHSGEHLFPD 415
L+GP G GKS FL L+ G + P++GE+R P R IG Q LFP
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYA--LFPH 84
Query: 416 DTPCEYLMKLF-NLPY-----------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463
+ ++ N+ Y + R G+ P LSGG++ RVA
Sbjct: 85 -------LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQRVA 136
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGV----ILVSHD 509
LA + P +L+LDEP + +D+++ L E ++ Q + V+HD
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 4e-13
Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 23/166 (13%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGEL-- 393
V YPGG + V+ + V L+GP+G GK+T L L+ G P KG++
Sbjct: 17 FVGVEKIYPGGARSVRGVS--FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 394 ------RKSPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLP----YEKSRRQLGM 439
P+ R +G Q+ LF T + + ++ +P + R L
Sbjct: 75 GGKRVTDLPPQKRNVGLVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRF 132
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
L SYA+ P +LSGGQ+ RVALA P +L+ DEP +D
Sbjct: 133 MRLESYANRFP-HELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 57 SVDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
S+ I+ G + QI G GL+GP+G GKTT+LR IA
Sbjct: 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA 62
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 1e-12
Identities = 53/160 (33%), Positives = 70/160 (43%), Gaps = 26/160 (16%)
Query: 352 LEKVNFGLDMESRVALVGPNGIGKSTFL---NLL----KG-------ELTPNKGELRKSP 397
L+ +N + V ++GP+G GKSTFL NLL +G L L K
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV- 98
Query: 398 RLRIGKFDQHSGEHLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTI 449
R +G Q +LFP T + K+ P K+ L GL AH
Sbjct: 99 REEVGMVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 450 PIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
P LSGGQ RVA+A P I++ DEPT+ LD E +
Sbjct: 157 PDS-LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
L + ++ + +L ++ LD + ++G +G GK+T L L G P+ GE+
Sbjct: 3 AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 394 RKSPRLRIGKFDQHSGEH------------LFPDDTPCE---YLMKLFNLPYEKSRRQ-- 436
S + I + + LFP T Y + + R++
Sbjct: 62 SLSGK-TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 437 --LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
L + G+ A P +LSGGQ+ R ALA +P++++LDEP + LD + + E
Sbjct: 121 AMLELTGISELAGRYP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIRE 179
Query: 495 AIKNYQ--GGV--ILVSHD 509
+ G + VSHD
Sbjct: 180 DMIAALRANGKSAVFVSHD 198
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 57/213 (26%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ +VT + GG +L+ +NF ++ +A+ G G GK++ L ++ GEL P++G+++ S
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI 449
RI Q S ++M +F + Y++ R Y I
Sbjct: 69 G--RISFCSQFS------------WIMPGTIKENIIFGVSYDEYR----------YRSVI 104
Query: 450 ------------PIRD----------LSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
+D LSGGQ+AR++LA + D+ +LD P LD+
Sbjct: 105 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 488 SIDAL-AEAIKNYQGG--VILVSHDERLIRETD 517
+ + + ILV+ +++ D
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 197
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 316 PREYIVKFRFPNPPYLPPPVLGLHDV--TFGYPGGKVL-LEKVNFGLDMESRVALVGPNG 372
+ + ++ L ++ F + L V+ + ++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 373 IGKSTF---LNLL----KGELTPN--------KGELRKSPRLRIGKFDQHSGEHLFPDDT 417
GKST +NLL +G + + + EL K+ R +IG QH +L T
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQHF--NLLSSRT 121
Query: 418 PCE---YLMKLFNLPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470
++L N P ++ +R+ L + GL + P +LSGGQK RVA+A +
Sbjct: 122 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALAS 180
Query: 471 NPDILILDEPTNNLDIE---SIDALAEAIKNYQGG--VILVSHDERLIRE 515
NP +L+ D+ T+ LD SI L + I N + G ++L++H+ +++
Sbjct: 181 NPKVLLCDQATSALDPATTRSILELLKDI-NRRLGLTILLITHEMDVVKR 229
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 42 QSSKASSKRSTVDDNSVDIKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHG 97
SS DD + IK+ N F + ++ +N +L + +G+ YG++G +G G
Sbjct: 8 HHHHHSSGHIDDDDKHM-IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAG 66
Query: 98 KTTLLRHI 105
K+TL+R +
Sbjct: 67 KSTLIRCV 74
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 35/175 (20%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
+ +V+ + GKV+ N +++E+ ++GP+G GK+TF+ ++ G P+ GEL
Sbjct: 6 VKNVSKVFKKGKVVALD-NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY- 63
Query: 396 SPRLRIGKFDQHSGEH------------------LFPDDTPCE---YLMKLFNLP----Y 430
S L+P+ T E + + +
Sbjct: 64 -----FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
++ + + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 9e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
N N+ I +G R+G++GP+G GKTT +R IA
Sbjct: 22 DNVNINIENGERFGILGPSGAGKTTFMRIIA 52
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 1e-10
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALA 493
+ P+ LSGG++ + LA +LILDEPT LD E L
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 494 EAIKNYQGG---VILVSHDERLIRETD 517
++ Y VILVSHDE L D
Sbjct: 295 TIMERYLKKIPQVILVSHDEELKDAAD 321
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 30/153 (19%)
Query: 365 VALVGPNGIGKSTFL---NLL----KGELT----------PNKGELRKSPRLRIGKFDQH 407
++++G +G GKSTFL N L +G + G+L+ + + ++
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94
Query: 408 SGE-----HLFPDDTPCEYLM----KLFNLP----YEKSRRQLGMFGLPSYAHTIPIRDL 454
+L+ T E +M ++ L E++ + L G+ A L
Sbjct: 95 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 154
Query: 455 SGGQKARVALAELTLNNPDILILDEPTNNLDIE 487
SGGQ+ RV++A PD+L+ DEPT+ LD E
Sbjct: 155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 34/160 (21%)
Query: 348 GKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR--------KSP 397
L+ ++ L +ES ++GP G GK+ FL L+ G P+ G + SP
Sbjct: 12 KNFSLDNLS--LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP 69
Query: 398 RLR-IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPY----------EKSRRQLGMFGLPSY 445
I Q+ LFP M + NL + ++ +
Sbjct: 70 EKHDIAFVYQNYS--LFPH-------MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 446 AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
P LSGG++ RVALA + NP IL+LDEP + LD
Sbjct: 121 LDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 54/173 (31%)
Query: 338 LHDVTFGY-PGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396
+ + TF + L + F + + VA+VG G GKS+ L+ L E+ +G +
Sbjct: 6 VRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65
Query: 397 PRLRIGKFDQHSGEHLFPDDTPCEYLMK-------LFNLPYEKSRRQLGMFGLPSYAHTI 449
+ Q + ++ LF E+ Y I
Sbjct: 66 G--SVAYVPQQA------------WIQNDSLRENILFGCQLEEPY----------YRSVI 101
Query: 450 ------------PIRD----------LSGGQKARVALAELTLNNPDILILDEP 480
P D LSGGQK RV+LA +N DI + D+P
Sbjct: 102 QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 154
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 1e-09
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 450 PIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P+ LSGG++ + LA +LILDEPT LD E L ++ Y
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 503 --VILVSHDERLIRETD 517
VILVSHDE L D
Sbjct: 114 PQVILVSHDEELKDAAD 130
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES----IDALAEAIKNYQGGVILVSHD 509
LSGGQ+ VALA + P +LILD T+ LD + L E+ + V+L++
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ- 215
Query: 510 ERL--IRETD 517
+L
Sbjct: 216 -QLSLAERAH 224
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 326 PNPPYLPPPVLG---LHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLN 380
+ P + G DV+F YP +L+ + F L ALVGPNG GKST
Sbjct: 4 LSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAA 63
Query: 381 LL 382
LL
Sbjct: 64 LL 65
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 81/224 (36%)
Query: 311 ELLEKPREYIVKFRFPNP-PYLPPPVLG---LHDVTFGYPGGKVLLEKVNFGLDMESRVA 366
E+L+ E +P V G +V F Y K +L+ + F + +VA
Sbjct: 332 EILDLEEE------KDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVA 385
Query: 367 LVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426
LVGP G GK+T +NLL ++G++ D D +K
Sbjct: 386 LVGPTGSGKTTIVNLLMRFYDVDRGQIL---------VDGI--------DI---RKIKRS 425
Query: 427 NLPYEKSRRQLGM-----------------FGLP-------------SYAHTIPIRDLSG 456
+L R +G+ +G P +++ I+ L
Sbjct: 426 SL-----RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHF-IKHLPE 479
Query: 457 G---------------QKARVALAELTLNNPDILILDEPTNNLD 485
G Q+ +A+ L NP ILILDE T+N+D
Sbjct: 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 68/253 (26%)
Query: 299 KRVQKDDDDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFG 358
+ V ++ EL EK ++ N + G +L+ +NF
Sbjct: 8 ENVTAFWEEGFGELFEKAKQ-------NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFK 60
Query: 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
++ +A+ G G GK++ L ++ GEL P++G+++ HSG F
Sbjct: 61 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK------------HSGRISFCSQNS 108
Query: 419 CEYLMKLFN---------LPYEKSRRQLGMFGLPSYAHTI------------PIRDL--- 454
+ + Y++ R Y I +D
Sbjct: 109 W-----IMPGTIKENIIGVSYDEYR----------YRSVIKACQLEEDISKFAEKDNIVL 153
Query: 455 -------SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGG--VI 504
SGGQ+AR++LA + D+ +LD P LD+ + + + I
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 505 LVSHDERLIRETD 517
LV+ +++ D
Sbjct: 214 LVTSKMEHLKKAD 226
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDER 511
LSGG++ R+A+A L +P I+I DE T++LD ++ +A+++ + +I+++H R
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH--R 213
Query: 512 L--IRETDC 518
L I +
Sbjct: 214 LSTISSAES 222
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 340 DVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL 382
DV F YP L+ +NF + + ALVG G GKST LL
Sbjct: 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 79/507 (15%), Positives = 153/507 (30%), Gaps = 126/507 (24%)
Query: 76 HNANLQIASGRRYGLVGPNGHGKTTL----LRHIATRALAIPSSI---DLLYCEQEVEAS 128
A L++ + + G G GKT + + + I +L C S
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCN-----S 194
Query: 129 DDSAVNIVLSADKNRVKLLKECSKLERDESGDN-QLRLTEVYDELKSIEADAAEPRARRI 187
++ + ++ ++ + + R + N +LR+ + EL+ + +
Sbjct: 195 PETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 188 LAGLGFTTIYIPSSRVHEIMRTWK------KTLLVVSHDQS---FLNNICTDIIHL-DMK 237
L + + W K L+ + + FL+ T I L
Sbjct: 250 LLN-----VQNA--------KAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 238 KLFYYKGNFTLFKKMYVQKRKELTKEYE----LQEKQIREMKSQGMSKEKAERQHSHKAL 293
+L K + ++L +E + I E G++ + + L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 294 KEQARKRVQKDDDDEPKELLEKPREYIVKFR-FPNPPYLPPPVLGL--HDVTFGYPG--- 347
+ + EP E R+ + FP ++P +L L DV
Sbjct: 356 TTIIESSL---NVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 348 ----GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS--PRLRI 401
L+EK ES +++ + L N+ L +S I
Sbjct: 409 NKLHKYSLVEKQPK----ESTISIPS---------IYLELKVKLENEYALHRSIVDHYNI 455
Query: 402 GK---------------FDQHSGEHLF---PDDTPCEYLMKLFNLPYEKSR-RQLGMFGL 442
K F H G HL + + M + + + + R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS---- 511
Query: 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG 502
++ + I + L +L P I ++P + L AI ++
Sbjct: 512 TAWNASGSILNT---------LQQLKFYKPYI-CDNDPKY-------ERLVNAILDF--- 551
Query: 503 VILVSHDERLIRETDCEL--WALEKKN 527
L +E LI +L AL ++
Sbjct: 552 --LPKIEENLICSKYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 1e-08
Identities = 60/392 (15%), Positives = 113/392 (28%), Gaps = 92/392 (23%)
Query: 203 VHEIMRTWKKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELT 261
E +K L V + +F++N C D+ DM K K + + ++
Sbjct: 11 TGEHQYQYKDILSV--FEDAFVDNFDCKDV--QDMPKSILSKEEI----DHIIMSKDAVS 62
Query: 262 KEYELQEKQIREMKSQGMSKEKAER------QHSHKALKEQARKRVQKDDDDEPKELLEK 315
L + S+ +E ++ + ++K L + ++ + ++
Sbjct: 63 GTLRL----FWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 316 PREYIVKFRFPNPPYL---PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNG 372
R Y F Y P L L + LLE L V + G G
Sbjct: 117 DRLYNDNQVFA--KYNVSRLQPYLKLR---------QALLE-----LRPAKNVLIDGVLG 160
Query: 373 IGKSTFLNLLKGELTPNKGELRKSPR----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNL 428
GK+ + ++ + K L + ++P L L L
Sbjct: 161 SGKTW----VALDVCLSYKVQCKMDFKIFWLNLKN-----------CNSPETVLEMLQKL 205
Query: 429 PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIES 488
Y + ++ I +R S + R L N +L+L N +
Sbjct: 206 LY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNA 261
Query: 489 ID------------ALAEAIKNYQGGVILVSHDERLIRETDC-ELWALEKKNIRKFNGDF 535
+ + + + I + H + + L + +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRP 315
Query: 536 DDYREKLLTSLGEAMVYNP---SVAAEQDDDE 564
D E + NP S+ AE D
Sbjct: 316 QDLPR-------EVLTTNPRRLSIIAESIRDG 340
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 27/49 (55%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIES---I-DALAEAIKN 498
LSGGQK R+++A + LNNP ILILDE T+ LD+ES I +AL K+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD 526
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 307 DEPKELLEKPREYIVKFRFPNPPYLPPPVLG---LHDVTFGYPGGKV-LLEKVNFGLDME 362
DE ++ G + V+F Y + +L+ +N ++
Sbjct: 319 DEDYDIKNGVG-----------AQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 363 SRVALVGPNGIGKSTFLNLL 382
VA VG +G GKST +NL+
Sbjct: 368 ETVAFVGMSGGGKSTLINLI 387
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 420 EYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE-------LTLNNP 472
E + + + + + I +LSGG++ VAL+ L N
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRV 306
Query: 473 DILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERL 512
+ +ILDEPT LD LAE + + +I+++H L
Sbjct: 307 ECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 24/166 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L ++ + L N L ++ +AL+GP+G GKST L + G P G++
Sbjct: 6 LENIVKKFGNFTAL---NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 395 -------KSPRLR-IGKFDQHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQLG----M 439
P+ R +G Q+ L+P T + + ++L P E+ +++ M
Sbjct: 63 DEKDVTELPPKDRNVGLVFQNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKM 120
Query: 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + P LSGGQ+ RVA+A + P++L+LDEP +NLD
Sbjct: 121 LHIDKLLNRYP-WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 3e-07
Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 45/179 (25%)
Query: 333 PPVLGLHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391
VL + + Y G + ++ ++ + V L+G NG GK+T L+ + G + KG
Sbjct: 4 DIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 392 ELRKSPRLRIGKFDQHS-----------GEHLFPDDTPCEYLM----------------- 423
++ + + I H G +FP+ T E LM
Sbjct: 62 KIIFNGQ-DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE 120
Query: 424 KLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481
+F+L P K R + T LSGG++ +A+ ++ P +L++DEP+
Sbjct: 121 WIFSLFPRLKERLK-------QLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPS 167
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 450 PIRDLSGGQKARV------ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG- 502
P R LSGG++A + +LAE+ D +DE ++LD E+ + +A +K +
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN 335
Query: 503 --VILVSHDERL 512
++ ++HD
Sbjct: 336 KVIVFITHDREF 347
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK 395
L DV + + L+++ + L+GP+G GK+T L ++ G P++G++
Sbjct: 6 LVDVWKVFGEVTAV---REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY- 61
Query: 396 SPRLRIGKF---DQHSGEHLFPDD----------------TPCE---YLMKLFNLPYEKS 433
IG D G + P D T + + +KL +P ++
Sbjct: 62 -----IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 434 RRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+++ + GL + P R+LSGGQ+ RVAL + P + ++DEP +NLD
Sbjct: 117 DQRVREVAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 32/170 (18%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELR- 394
L ++T + + L ++ + L+GP+G GK+T L ++ G P +G +
Sbjct: 14 LENLTKRFGNFTAV---NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 395 -------KSPRLRIGKFD-----QHSGEHLFPDDTPCE---YLMKLFNLPYEKSRRQL-- 437
P+ R + Q ++P T E + +K+ P ++ +++
Sbjct: 71 GDRDVTYLPPKDR----NISMVFQSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRW 124
Query: 438 --GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + + P LSGGQ+ RVA+A + PD+L++DEP +NLD
Sbjct: 125 AAELLQIEELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 45/170 (26%)
Query: 345 YPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIG 402
Y G ++ V+ +++ VAL+GP+G GK+T L +L G P GE +
Sbjct: 12 YFGKVKAVDGVS--FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE------IYFD 63
Query: 403 KFDQHSGEHLFPDDTPCE-----------------------YLMKLFNLPYEKSRRQL-- 437
+ L D P + ++ + ++ +++
Sbjct: 64 -------DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVE 116
Query: 438 --GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485
+ + P LSGGQ+ RVALA + P +L+ DEP +NLD
Sbjct: 117 IARKLLIDNLLDRKP-TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
V+ + ++ G L+GP+G GKTT L +A
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 5e-05
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 255 QKRKE---LTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKR------VQKDD 305
+ +E + K E Q K+++E+ + E+ R+ + K L+E +++ + ++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 306 DDEPKELLEKPREYIV 321
K ++P I+
Sbjct: 139 RIADKAFYQQPDADII 154
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
LS G K + LA L+ IL+LDEP+ +LD + +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT-YQI 193
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 21/173 (12%), Positives = 52/173 (30%), Gaps = 19/173 (10%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
++ + G G+GK+T + + L + +R + + +G + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW-TEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE--PT 481
F + Y + + A E + ++I+DE
Sbjct: 61 SKFFTSKKLVGS---------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 482 NNLDIESIDALAEAIKNYQGGVILVSHD-------ERLIRETDCELWALEKKN 527
+ D + + + + V+ + + R L L +N
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 454 LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVS 507
SGGQK R+++A + P +LILD+ T+++D + + + +K Y G +++
Sbjct: 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 324 RFPNPPYLPPPVLG---LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFL 379
+ P V G +V F Y L VNF + S VA++G G GKST +
Sbjct: 327 EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM 386
Query: 380 NLL 382
NL+
Sbjct: 387 NLI 389
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 51/195 (26%), Positives = 75/195 (38%), Gaps = 66/195 (33%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGE--------LRKSP--RLRIGKF------- 404
AL+GPNG GKST +L G + +GE L SP R R G F
Sbjct: 33 ALMGPNGAGKSTLGKILAGDPEYTVE--RGEILLDGENILELSPDERARKGLFLAFQYPV 90
Query: 405 ---------------DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTI 449
G + E+ K+ +K+ L SY
Sbjct: 91 EVPGVTIANFLRLALQAKLGREV----GVAEFWTKV-----KKALELLDW--DESYLS-- 137
Query: 450 PIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNYQG- 501
R L SGG+K R + +L + P +LDE + LD IDAL A + +G
Sbjct: 138 --RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD---IDALKVVARGVNAMRGP 192
Query: 502 --GVILVSHDERLIR 514
G ++++H +R++
Sbjct: 193 NFGALVITHYQRILN 207
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 7e-04
Identities = 46/198 (23%), Positives = 73/198 (36%), Gaps = 68/198 (34%)
Query: 366 ALVGPNGIGKSTFLNLLKG----ELTPNKGE--------LRKSP--RLRIGKF------- 404
A++GPNG GKST L G E+T G L SP R G F
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVT--GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107
Query: 405 ------------------DQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYA 446
+ G+ ++ + E+ L M
Sbjct: 108 EIPGVSNQFFLQTALNAVRSYRGQ---ETLDRFDFQDLM-----EEKIALLKM--PEDLL 157
Query: 447 HTIPIRDL----SGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL---AEAIKNY 499
R + SGG+K R + ++ + P++ ILDE + LD IDAL A+ + +
Sbjct: 158 T----RSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD---IDALKVVADGVNSL 210
Query: 500 QG---GVILVSHDERLIR 514
+ I+V+H +R++
Sbjct: 211 RDGKRSFIIVTHYQRILD 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.92 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.9 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.9 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.9 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.89 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.89 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.89 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.89 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.89 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.89 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.89 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.89 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.89 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.89 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.89 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.88 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.88 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.88 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.88 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.88 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.88 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.88 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.87 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.87 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.87 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.87 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.86 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.86 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.86 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.85 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.85 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.85 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.84 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.84 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.83 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.83 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.83 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.83 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.82 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.82 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.79 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.79 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.79 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.78 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.78 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.78 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.77 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.77 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.77 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.77 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.77 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.76 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.75 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.75 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.73 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.72 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.71 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.7 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.7 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.69 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.68 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.68 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.66 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.66 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.65 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.64 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.63 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.62 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.59 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.58 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.55 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.55 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.51 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.5 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.48 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.45 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.45 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.42 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.39 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.39 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.36 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.35 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.35 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.32 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.32 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.32 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.31 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.3 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.29 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.27 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.27 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.27 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.26 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.25 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.24 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.23 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.22 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.22 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.18 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.18 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.16 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.16 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.15 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.15 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.14 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.1 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.07 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.06 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.06 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.05 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.05 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.04 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.04 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.03 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.03 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.02 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.01 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.01 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.99 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.97 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.93 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.88 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.87 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.87 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.83 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.8 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.78 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.76 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 98.75 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.75 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.74 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.7 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.68 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.68 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.67 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.66 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.65 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.64 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.63 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.63 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.63 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.62 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.6 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.6 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.59 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.58 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.57 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.57 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.56 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.54 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.51 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.48 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.48 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.48 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.47 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.43 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.43 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.42 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.41 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.4 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.4 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.37 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.37 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.34 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.33 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.33 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.29 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.29 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.28 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 98.28 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.28 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.27 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.25 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.22 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.21 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.2 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.19 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.18 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.18 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.18 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.17 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.16 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.16 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.14 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.13 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.13 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.13 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.11 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.11 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.1 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.1 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.09 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.06 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.02 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.02 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.02 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.01 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.0 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 98.0 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.0 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.99 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 97.98 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 97.95 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.95 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.94 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.94 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.91 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.91 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.9 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.9 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.9 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.88 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.87 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.86 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.86 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.86 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 97.86 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.84 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 97.82 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.81 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.81 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.81 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.8 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.8 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.79 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.77 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.76 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.76 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.76 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.75 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.75 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.75 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.74 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.71 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.71 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.7 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.69 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.68 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.68 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.68 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 97.65 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.65 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.65 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.64 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.64 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.64 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.64 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.62 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.61 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.59 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.55 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 97.55 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.54 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.5 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.5 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.49 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 97.47 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.44 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.43 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.42 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.42 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.38 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.36 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.36 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.33 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.32 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.32 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.27 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.26 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.25 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.25 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.24 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.24 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.23 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.22 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.21 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.2 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.2 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.19 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.18 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.18 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.15 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.14 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.12 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.12 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.11 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.09 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.08 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.08 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.07 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.07 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.05 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.05 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.04 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.03 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.03 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.01 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.01 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.97 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.96 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.95 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.92 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.9 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.9 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.9 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.89 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.88 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.88 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.88 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.88 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.86 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.85 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.85 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.85 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.84 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.84 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.83 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.83 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.83 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.79 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.78 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.77 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.76 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.74 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.73 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.72 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.72 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.71 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.71 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.7 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.69 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.69 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.67 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.66 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.66 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.64 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.64 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.62 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.61 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.6 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.58 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.58 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.56 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.55 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.55 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.55 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.49 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.47 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.44 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.44 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.43 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.41 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.39 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.35 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.35 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.35 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.35 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.33 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.33 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.33 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.32 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.32 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.31 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.29 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.28 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 96.28 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.24 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.21 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.21 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.17 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.16 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.15 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.13 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.13 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.12 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.11 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.1 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.1 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.09 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.08 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.08 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.07 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.06 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.06 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.04 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.04 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.03 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.02 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.01 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.0 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.98 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.98 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.97 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.97 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.96 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.93 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.92 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 95.92 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.9 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.9 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.9 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-63 Score=570.02 Aligned_cols=403 Identities=33% Similarity=0.550 Sum_probs=297.2
Q ss_pred CccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc---ccCCCceEEEEecccc--CCch
Q psy16366 56 NSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL---AIPSSIDLLYCEQEVE--ASDD 130 (568)
Q Consensus 56 ~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~---~ip~~~~i~~~~qe~~--~~~~ 130 (568)
....|...|++++|+++.+|+|+||+|.+|+++||+||||||||||||+|+|..+ +.+....+.|+.|+.. ....
T Consensus 432 ~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 432 EGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp SSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTS
T ss_pred ccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCC
Confidence 3457788899999999999999999999999999999999999999999995322 1222344567666541 1222
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH--------hccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 131 SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL--------KSIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 131 ~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el--------~~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
+..+.+.... .+. ..++.++++.+ ..++..++++++|..|+..-+.. |+|
T Consensus 512 tv~e~l~~~~-----------------~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD 573 (986)
T 2iw3_A 512 SVLDFVFESG-----------------VGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD 573 (986)
T ss_dssp BHHHHHHTTC-----------------SSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHhh-----------------cCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3333332100 000 11222222221 22455788898888776654333 889
Q ss_pred Cc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy16366 199 PS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEK 269 (568)
Q Consensus 199 eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ 269 (568)
|| .||.++++..++|||+||||++++..+||+|++|++|+++.|.|+++.|.......
T Consensus 574 EPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~------------- 640 (986)
T 2iw3_A 574 EPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAA------------- 640 (986)
T ss_dssp STTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGG-------------
T ss_pred CCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHH-------------
Confidence 99 28888888878999999999999999999999999999988889988764310000
Q ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC------CCCCCeEEEEeeEE
Q psy16366 270 QIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP------YLPPPVLGLHDVTF 343 (568)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~v~~ 343 (568)
... .. . .. ....+.+|.+. ..+.++|+++|++|
T Consensus 641 -----~~~-----------------------~~--l--~~---------~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~ 679 (986)
T 2iw3_A 641 -----KAY-----------------------EE--L--SN---------TDLEFKFPEPGYLEGVKTKQKAIVKVTNMEF 679 (986)
T ss_dssp -----GGS-----------------------SS--T--TT---------CCCCCCCCCCCCCTTCCSTTSEEEEEEEEEE
T ss_pred -----HHH-----------------------Hh--h--hh---------hhhhccccccccccccccCCCceEEEEeeEE
Confidence 000 00 0 00 00011122211 12356899999999
Q ss_pred EeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC--CCCCCHHH
Q psy16366 344 GYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL--FPDDTPCE 420 (568)
Q Consensus 344 ~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l--~~~~~~~e 420 (568)
+|++ .+++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.++...+|+|++|++...+ ..+.|+.+
T Consensus 680 ~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e 759 (986)
T 2iw3_A 680 QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSE 759 (986)
T ss_dssp CCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHH
T ss_pred EeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHH
Confidence 9954 26799999999999999999999999999999999999999999999987778999999752100 01122222
Q ss_pred HHHH----------------------------------------------------------------------------
Q psy16366 421 YLMK---------------------------------------------------------------------------- 424 (568)
Q Consensus 421 ~l~~---------------------------------------------------------------------------- 424 (568)
++..
T Consensus 760 ~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~ 839 (986)
T 2iw3_A 760 YIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMS 839 (986)
T ss_dssp HHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCG
T ss_pred HHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccch
Confidence 2110
Q ss_pred --------------------------------hcCCCHHHHHHHHHhCCCCCcc-ccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 425 --------------------------------LFNLPYEKSRRQLGMFGLPSYA-HTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 425 --------------------------------~~~~~~~~~~~~L~~~~l~~~~-~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
........++++|+.+||.... ..+++.+|||||||||+|||+|+.+
T Consensus 840 ~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~ 919 (986)
T 2iw3_A 840 VDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQR 919 (986)
T ss_dssp GGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTC
T ss_pred hhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhC
Confidence 0011245677899999997543 3457899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+||||||||||||+.+...+.+.|+++++|||+||||++++..+|+++|+|.+|+++.
T Consensus 920 P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 920 PHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp CSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-59 Score=515.02 Aligned_cols=414 Identities=23% Similarity=0.261 Sum_probs=272.1
Q ss_pred eEE-eeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc--cCCchhHHH-
Q psy16366 60 IKV-ENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV--EASDDSAVN- 134 (568)
Q Consensus 60 I~i-~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~--~~~~~~~~~- 134 (568)
..+ +|++++|+++ .+|.++| +|.+||++|||||||||||||||+|+|...| ..+.+......+ ...+.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p--~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP--NLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC--CTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCccCcchhhhHHhhCCccHHHH
Confidence 345 5899999887 4899999 9999999999999999999999999997433 222210000000 000000000
Q ss_pred --HHH----------hc---cHHHH-HHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 135 --IVL----------SA---DKNRV-KLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 135 --~v~----------~~---~~~~~-~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
... +. ..... ....+ .+... +...+..++++.+. .+...+.++++|..++..
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e--~~~~~---~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAra 172 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIE--LLKKA---DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAA 172 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHH--HHHHH---CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHH--HHhhh---hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHH
Confidence 000 00 00000 00000 00000 00112333444432 123357778888777654
Q ss_pred CCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeee--EEcCChhHHHHH
Q psy16366 192 GFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF--YYKGNFTLFKKM 252 (568)
Q Consensus 192 g~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~--~~~g~y~~~~~~ 252 (568)
-+.. |+|||. ||.++.+ .++|||+||||++++..+||+|++|+++... .+..+++.-..
T Consensus 173 L~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~- 250 (538)
T 1yqt_A 173 LLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG- 250 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH-
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHHH-
Confidence 3332 889991 4555443 4899999999999999999999999865321 22233331100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCC--C
Q psy16366 253 YVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPP--Y 330 (568)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 330 (568)
+..... +. .... .. . .......+.++.+. .
T Consensus 251 ------------------~~~~~~-~~---------------------~~~~------~~-~-~~~~~~~~~~~~~~~~~ 282 (538)
T 1yqt_A 251 ------------------INEFLR-GY---------------------LKDE------NV-R-FRPYEIKFTKTGERVEI 282 (538)
T ss_dssp ------------------HHHHHH-TE---------------------ETTT------TE-E-CSSSCCCCCCSSGGGSS
T ss_pred ------------------HHHHhh-hc---------------------cchh------hh-c-ccccccccccCCccccc
Confidence 000000 00 0000 00 0 00000011111111 1
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCC
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
.+.++++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.. ...|+|++|++.
T Consensus 283 ~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--~~~i~~v~Q~~~- 357 (538)
T 1yqt_A 283 ERETLVTYPRLVKDY-GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--DLTVAYKPQYIK- 357 (538)
T ss_dssp CCCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC--CCCEEEECSSCC-
T ss_pred CCCeEEEEeeEEEEE-CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE--CceEEEEecCCc-
Confidence 245689999999999 44 5799999999999999999999999999999999999999999976 457999999874
Q ss_pred CCCCCCCHHHHHHHh--cC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 411 HLFPDDTPCEYLMKL--FN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~--~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
.+...|+.+++... .. ...+.++++|+.+++.... .+++.+|||||||||+|||+|+.+|+||||||||+|||+.
T Consensus 358 -~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 358 -ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp -CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred -CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 34567887765432 11 1345577889999997554 4588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHH
Q psy16366 488 SIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYR 539 (568)
Q Consensus 488 ~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~ 539 (568)
++..+.++|+++ ++|||+||||++++..+||++++|.+ |.+. ..|++++..
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG-RALPPMGMR 492 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe-ecCCHHHHH
Confidence 999999998754 78999999999999999999999986 5665 346665544
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=512.24 Aligned_cols=417 Identities=24% Similarity=0.265 Sum_probs=276.6
Q ss_pred ceEE--------eeeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc--cC
Q psy16366 59 DIKV--------ENFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV--EA 127 (568)
Q Consensus 59 ~I~i--------~nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~--~~ 127 (568)
.|++ +|++++|++. .+|+++| +|.+||++||+||||||||||||+|+|...| ..+.+.....++ ..
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p--~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP--NLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC--CTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC--CCCccccccchhhhee
Confidence 4788 8999999877 4999999 9999999999999999999999999997433 222210000000 00
Q ss_pred CchhHHHHHH--------------hccHHHHHHH--HHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHH
Q psy16366 128 SDDSAVNIVL--------------SADKNRVKLL--KECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRA 184 (568)
Q Consensus 128 ~~~~~~~~v~--------------~~~~~~~~l~--~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~ 184 (568)
.+.. +.... +.......+. ...+.+.. .+...+..++++.+. .+...++++++
T Consensus 160 ~G~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQ 235 (607)
T 3bk7_A 160 RGNE-LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK---VDEVGKFEEVVKELELENVLDRELHQLSGGELQ 235 (607)
T ss_dssp TTST-HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH---TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHH
T ss_pred CCEe-hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh---hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHH
Confidence 0000 00000 0000000000 00000000 000112334444432 22345788888
Q ss_pred HHHHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeE--EcCC
Q psy16366 185 RRILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFY--YKGN 245 (568)
Q Consensus 185 ~~~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~--~~g~ 245 (568)
|..++..-+.. |+|||. ||.++.+ .+.|||+||||++++..+||+|++|+++...+ +..+
T Consensus 236 RvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~ 314 (607)
T 3bk7_A 236 RVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKP 314 (607)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCC
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEEEECCCccccceeccc
Confidence 87776543332 889991 4555443 38999999999999999999999998653221 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeec
Q psy16366 246 FTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRF 325 (568)
Q Consensus 246 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (568)
++.-. . +..... +. ... . .. . .......+.+
T Consensus 315 ~~~~~---------~----------i~~~~~-~~---------------------~~~----~--~~-~-~~~~~~~~~~ 345 (607)
T 3bk7_A 315 KGTRN---------G----------INEFLQ-GY---------------------LKD----E--NV-R-FRPYEIRFTK 345 (607)
T ss_dssp EEHHH---------H----------HHHHHH-TE---------------------ETT----T--TE-E-CCSSCCCCCC
T ss_pred hhHHH---------H----------HHHHHh-hc---------------------chh----h--hh-h-cccccccccc
Confidence 22100 0 000000 00 000 0 00 0 0000111122
Q ss_pred CCCC--CCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEE
Q psy16366 326 PNPP--YLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGK 403 (568)
Q Consensus 326 ~~~~--~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~ 403 (568)
+.+. ....++++++|+++.| ++ ..|+++||+|.+||+++|+||||||||||||+|+|+++|++|+|.. ..+++|
T Consensus 346 ~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--~~~i~~ 421 (607)
T 3bk7_A 346 LSERVDVERETLVEYPRLVKDY-GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--DLTVAY 421 (607)
T ss_dssp STTSCCCCCCEEEEECCEEEEC-SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC--CCCEEE
T ss_pred CCCcccccCceEEEEeceEEEe-cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE--eeEEEE
Confidence 2111 1235689999999999 44 4799999999999999999999999999999999999999999976 457999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-c-C-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-F-N-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~-~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
++|++. ++...|+.+++... . . ...+.+.++|+.+++....+ +++.+|||||||||+|||||+.+|+|||||||
T Consensus 422 v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 422 KPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYD-RNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp ECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTT-SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred EecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999874 34567887766432 1 1 12345678899999986554 57899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYRE 540 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~~ 540 (568)
|+|||+.++..+.++|+++ +.|||+||||++++..+||++++|++ |.+. ..|++++...
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~-~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG-RALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE-EECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE-ecCCHHHHHh
Confidence 9999999999999998764 67999999999999999999999986 6654 3466655543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-54 Score=482.77 Aligned_cols=411 Identities=19% Similarity=0.219 Sum_probs=264.3
Q ss_pred eeEEEeCCc-eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHHh-ccH
Q psy16366 64 NFSLSAKGV-ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVLS-ADK 141 (568)
Q Consensus 64 nls~~~~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~~-~~~ 141 (568)
|++++|++. ..|++++ ++.+|+++||+||||||||||||+|+|...|. .+.+.. . .........+. ...
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~-----~-~~~~~~~~~~~g~~~ 152 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDD-----P-PEWQEIIKYFRGSEL 152 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCC-----S-SCHHHHHHHTTTSTH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEec-----c-cchhhhhheecChhh
Confidence 467788765 4666666 68999999999999999999999999975433 222200 0 00000000000 000
Q ss_pred HHH--HHHHH------------------------HHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHH
Q psy16366 142 NRV--KLLKE------------------------CSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRIL 188 (568)
Q Consensus 142 ~~~--~l~~~------------------------~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L 188 (568)
... ..... ...+..........+..++++.+. .+...++++++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 153 QNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred hhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 000 00000 000000000111234445555542 234567788888776
Q ss_pred HhcCCCc----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE--cCChhHHH
Q psy16366 189 AGLGFTT----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY--KGNFTLFK 250 (568)
Q Consensus 189 ~~lg~~~----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~--~g~y~~~~ 250 (568)
+..-+.. ++|||. ++.+++++ .+.|||+||||++++..+||+|++|+++...+. ..+++. .
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~-~ 311 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV-R 311 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH-H
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccccceecCchhH-H
Confidence 6543322 889992 44455443 378999999999999999999999987654321 111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCccceeeeecCCCCC
Q psy16366 251 KMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPREYIVKFRFPNPPY 330 (568)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (568)
. . +..+.. + ... ..... .......+.....
T Consensus 312 ~--------~----------~~~~~~-~---------------------~~~------~~~~~--~~~~~~~~~~~~~-- 341 (608)
T 3j16_B 312 E--------G----------INIFLD-G---------------------HIP------AENLR--FRTEALQFRIADA-- 341 (608)
T ss_dssp H--------H----------HHHHHH-T---------------------EET------TTTEE--CSSSCCCCCCSSS--
T ss_pred H--------H----------HHHhhc-c---------------------ccc------hhhhc--ccccccccccccc--
Confidence 0 0 000000 0 000 00000 0000000111100
Q ss_pred CCCCeEEEEeeEEEeCCCceeeeeeeEEEeCC-----CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEe
Q psy16366 331 LPPPVLGLHDVTFGYPGGKVLLEKVNFGLDME-----SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFD 405 (568)
Q Consensus 331 ~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~G-----e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~ 405 (568)
.....+...++++.|++...+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. ....++|++
T Consensus 342 ~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~~~~i~~~~ 419 (608)
T 3j16_B 342 TEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--PKLNVSMKP 419 (608)
T ss_dssp SCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--CSCCEEEEC
T ss_pred ccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--cCCcEEEec
Confidence 01111222567888954456899999999999 88999999999999999999999999999742 345799999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc-C--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF-N--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~-~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
|+.. .....++.+++.... . .....+.++++.+++....+ +++.+|||||||||+|||||+.+|+||||||||+
T Consensus 420 q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 420 QKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIID-QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSS-SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9864 233457777664322 1 23456678899999987665 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEEC--CeEEEEcCCHHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEK--KNIRKFNGDFDDYRE 540 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~--g~i~~~~g~~~~~~~ 540 (568)
|||+.++..+.++|+++ +.|||+||||++++..+||++++|++ |++. ..|++++...
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNA-HARAPESLLT 559 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEE-ECCCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEE-ecCChHHHhh
Confidence 99999999998888764 68999999999999999999999986 7775 4666665543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-55 Score=479.25 Aligned_cols=296 Identities=20% Similarity=0.238 Sum_probs=214.1
Q ss_pred CCCChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeee
Q psy16366 176 EADAAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240 (568)
Q Consensus 176 ~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~ 240 (568)
...+.+++++..++..-+.. ++|||. +|.++++++ ++|||+||||++++..+||+|++|++|...
T Consensus 137 ~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCccc
Confidence 44678888887776543332 889992 455555444 789999999999999999999999876433
Q ss_pred E--EcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhcCCcc
Q psy16366 241 Y--YKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELLEKPRE 318 (568)
Q Consensus 241 ~--~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (568)
+ +...+..-. .... .+... .... .... +.
T Consensus 217 ~g~~~~~~~~~~---------~~~~---------~~~g~-----------------------~~~~----~~~~--r~-- 247 (538)
T 3ozx_A 217 YGRVSKSYAARV---------GINN---------FLKGY-----------------------LPAE----NMKI--RP-- 247 (538)
T ss_dssp EEEECCCEEHHH---------HHHH---------HHHTE-----------------------ETTT----TEEC--SS--
T ss_pred ccccchhhhHHH---------HHHH---------HHhhh-----------------------chhh----hhhc--cc--
Confidence 2 112222100 0000 00000 0000 0000 00
Q ss_pred ceeeeecCCC-----CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 319 YIVKFRFPNP-----PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 319 ~~~~~~~~~~-----~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
....+....+ .....++++++++++.| ++ ..|.++||+|++||++||+||||||||||+|+|+|+++|++|+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL-GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp SCCCCSCC----------CCEEEEECCEEEEE-TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred hhhhccccccccccccccccceEEEcceEEEE-CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 0000000000 01235689999999999 44 56888999999999999999999999999999999999999999
Q ss_pred EECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 394 RKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 394 ~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
... ...++|++|+.. .....|+.+++..... .....+.++++.+++....+ +++.+|||||||||+|||||+
T Consensus 326 ~~~-~~~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 326 TPE-KQILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp ESS-CCCEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-SBGGGCCHHHHHHHHHHHHHH
T ss_pred EEC-CeeeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHH
Confidence 865 456899999864 2346788887754321 12345677899999987655 478999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|+++
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999888754 679999999999999999999999863
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=512.49 Aligned_cols=202 Identities=27% Similarity=0.384 Sum_probs=167.7
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
..++++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|..++ +.+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 359999999999542 3699999999999999999999999999999999999999999998753 356
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc---CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF---NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~a 467 (568)
|+|++|++. +| ..|+.+++.... ..+.+++.+.++..++...... ....+|||||||||+||||
T Consensus 1109 i~~v~Q~~~--l~-~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPI--LF-DCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCC--CC-SSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCc--cc-cccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 999999983 55 469999875321 2355666666665554332221 1246899999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+.+|+||||||||++||+.+...+.+.|++. +.|||+||||++++.. ||+|++|++|++++ .|+++++.+
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~-~g~~~~l~~ 1258 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE-HGTHQQLLA 1258 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE-EECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999875 5699999999999965 99999999999986 477777653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-50 Score=481.06 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=171.4
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
-|+++||+|+||+ +.++|+||||+|++|+++|||||||||||||+++|.|+++|++|+|..++ |.+|
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5899999999964 34799999999999999999999999999999999999999999998764 4579
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELT 468 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al 468 (568)
++++|+|. +|.. |+.+++... .+.+.+++.++++..++.+..... .-..||||||||++|||||
T Consensus 1156 ~~V~Qdp~--LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT--LFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC--CCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE--eeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999984 6654 899987432 235677888888887764322111 2357999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+++|+||||||||++||+++...+.+.|++. ++|+|+|+|.++.+.. ||+|+||++|+|+++ |+++++.+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~-Gth~eLl~ 1304 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEK-GTHTQLMS 1304 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEESSSSEEEE-ECHHHHHH
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999876 5799999999999965 799999999999875 77777654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=443.01 Aligned_cols=105 Identities=27% Similarity=0.378 Sum_probs=89.7
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC---eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPTNNLDIESIDALAEAIKNY---QGGVIL 505 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~---lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~ 505 (568)
...+.|..+++......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+++ +.|||+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 455678889997544456889999999999999999998874 99999999999999999999888755 679999
Q ss_pred EecchHHHHhhCceEEEE------ECCeEEEEcCCHHHH
Q psy16366 506 VSHDERLIRETDCELWAL------EKKNIRKFNGDFDDY 538 (568)
Q Consensus 506 vsHd~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~ 538 (568)
||||++++. .||++++| ++|+++ ..|+.+++
T Consensus 602 vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~-~~g~~~~~ 638 (670)
T 3ux8_A 602 IEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEV 638 (670)
T ss_dssp ECCCHHHHT-TCSEEEEEESSSGGGCCEEE-EEECHHHH
T ss_pred EeCCHHHHH-hCCEEEEecCCcCCCCCEEE-EecCHHHH
Confidence 999999985 69999999 789987 45776664
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=379.51 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=176.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
.++|+++||+++|+++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.. +.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 35899999999995455699999999999999999999999999999999999999999998754 23
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.|||+||++...++ ..|+.+++... .+.+. +.+.++|+.+||....+ +++.+|||||||||+|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 59999999854555 67998877532 23343 34677899999987665 578999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 232 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 232 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999888654 579999999999999999999999999997 467777653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=373.25 Aligned_cols=201 Identities=27% Similarity=0.410 Sum_probs=175.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------- 397 (568)
++|+++||+++| +++++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++.
T Consensus 5 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 579999999999 677899999999999999999999999999999999999999999998643
Q ss_pred --------CeeEEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCc-cccCCCCCCCHhHHH
Q psy16366 398 --------RLRIGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSY-AHTIPIRDLSGGQKA 460 (568)
Q Consensus 398 --------~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~-~~~~~~~~LSgGqkq 460 (568)
+..+||++|++ .+++.+|+.+++... .+.+. +.+.++|+.+||... .+ +++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-KYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-SCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-CCcccCCHHHHH
Confidence 12499999986 478888999987531 23332 346788999999876 55 478999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQ 239 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 999999999999999999999999999999999988765 6799999999999999999999999999974 567666
Q ss_pred HH
Q psy16366 538 YR 539 (568)
Q Consensus 538 ~~ 539 (568)
+.
T Consensus 240 ~~ 241 (262)
T 1b0u_A 240 VF 241 (262)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=371.61 Aligned_cols=201 Identities=28% Similarity=0.403 Sum_probs=175.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~ 400 (568)
++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..
T Consensus 23 ~~l~i~~l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 479999999999 677899999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh----cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL----FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~----~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
|||++|++. +++.+|+.+++... .+.+. +.+.++|+.++|....+ +++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-AYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHCCC
Confidence 999999863 78888999987531 23332 34678899999987665 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 247 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGKPEDLF 247 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999998765 6799999999999999999999999999974 56766653
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=385.56 Aligned_cols=203 Identities=23% Similarity=0.335 Sum_probs=175.8
Q ss_pred CCCeEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------
Q psy16366 332 PPPVLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------- 397 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 397 (568)
..++|+++||+++|+++ .++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45789999999999532 4699999999999999999999999999999999999999999998753
Q ss_pred ---CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ---RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ---~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+.+|||+||++. +++.+|+.+++.. ..+.+. +.+.++|+.+||....+ +++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~--l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCC--CCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-CCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHH
Confidence 246999999974 8888999998753 234443 34677899999987665 4789999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++..+||++++|++|+++. .|+.+++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-CCBHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999988754 6799999999999999999999999999974 6766654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=368.07 Aligned_cols=193 Identities=28% Similarity=0.363 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------
Q psy16366 335 VLGLHDVTFGYPGG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------- 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 398 (568)
+|+++||+++|+++ .++|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 47899999999532 36999999999999999999999999999999999999999999987541
Q ss_pred --eeEEEEecCCCCCCCCCCCHHHHHHHh---c---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 --LRIGKFDQHSGEHLFPDDTPCEYLMKL---F---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 --~~i~~~~q~~~~~l~~~~~~~e~l~~~---~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
..|||++|++ .+++.+|+.+++... . .... +.+.++++.+++......+++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 2599999997 478889999987532 1 2222 346678999999865434578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.+|++|||||||++||+.+...+.+.|.++ +.|||+||||++.+ .+||++++|++|+++.
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999988764 67999999999965 7899999999999975
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-46 Score=364.10 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=168.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC---------------
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------------- 398 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 398 (568)
++|+++|++++| +++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++..
T Consensus 3 ~~l~~~~l~~~y-~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVI-RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 479999999999 5678999999999999999999999999999999999999999999986531
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..|+|++|++ .+++..|+.+++... .+.+ .+.+.++++.+++....+ +++.+|||||||||+|||||+.+
T Consensus 82 ~~i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-RKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-CCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 3599999987 377888999987532 2333 234677899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|++|||||||++||+.+...+.+.|.++ +.|||+||||++++ .+||++++|++|+++.
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999988765 67999999999998 7999999999999864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=368.84 Aligned_cols=202 Identities=25% Similarity=0.295 Sum_probs=176.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRI 401 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 401 (568)
.++|+++||++.| +++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++.. ..+
T Consensus 9 ~~~l~~~~l~~~~-~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHV-QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEe-CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 3689999999999 6789999999999999999999999999999999999999999999987542 359
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc------
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------ 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~------ 470 (568)
+|++|++. ++...|+.+++..... ...+.+.++++.+++....+. ++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 88 AVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-BGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-CcccCCHHHHHHHHHHHHHhcccccCC
Confidence 99999874 5567899998764321 123567889999999876654 789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 236 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEVL 236 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHC
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 99999999999999999999999988765 359999999999999999999999999997 467777764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=381.71 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=175.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Cee
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~~ 400 (568)
++|+++||+++| ++.++|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.+.. +..
T Consensus 3 ~~l~i~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 379999999999 678899999999999999999999999999999999999999999997643 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||+||++ .+|+.+|+.+++.... +.+ .+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|+
T Consensus 82 ig~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r-~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 82 LGYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR-YPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CEEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999987 4899999999986432 222 2456788999999877664 789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIK----NYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~----~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||++||+.++..+.+.|. +.+.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~el~ 227 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TASPHELY 227 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-EeCHHHHH
Confidence 999999999999999888876543 457899999999999999999999999999974 56776643
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=366.59 Aligned_cols=202 Identities=22% Similarity=0.334 Sum_probs=176.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEE
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIG 402 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~ 402 (568)
-++|+++||+++| +++++|++|||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.. +..||
T Consensus 13 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 3679999999999 678899999999999999999999999999999999999999999998754 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +++..|+.+++... .+.+. +.+.++++.+||....+ +++.+|||||||||+|||||+.+|+||
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-DRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-SBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999874 67788999987432 23332 34677899999987665 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 234 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELK 234 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999998765 5799999999999999999999999999974 56766654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=363.66 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=174.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------ee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 400 (568)
.++|+++||+++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++.. ..
T Consensus 4 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4589999999999 5678999999999999999999999999999999999999999999987531 24
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc--CC--C--HHHHHHHHHhCC-CCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF--NL--P--YEKSRRQLGMFG-LPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~--~~--~--~~~~~~~L~~~~-l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
|||++|++ .+++..|+.+++.... .. . .+.+.++++.++ +..... +++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhc-CChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999987 4778889999886422 11 1 234567888884 876655 4789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EcCHHHHh
Confidence 99999999999999999999998765 5799999999999999999999999999974 56666653
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=370.68 Aligned_cols=200 Identities=20% Similarity=0.282 Sum_probs=174.0
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------------Cee
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 400 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++. +..
T Consensus 5 ~~~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3589999999999 677899999999999999999999999999999999999999999998753 125
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-----C-----------CC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-----N-----------LP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-----~-----------~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
|+|++|++. +++..|+.+++.... + .. .+.+.++++.+||....+ +++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhC-CCchhCCHHHHH
Confidence 999999873 677889999875421 2 11 234677899999987655 478999999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
||+|||||+.+|+||||||||+|||+.++..+.++|.++ +.|||+||||++++..+||++++|++|+++. .|+.++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEE 239 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-EeCHHH
Confidence 999999999999999999999999999999999998765 6799999999999999999999999999974 456565
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=378.91 Aligned_cols=199 Identities=25% Similarity=0.357 Sum_probs=175.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| ++..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 678899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.. ..+.+. +.+.++|+.++|....+ +++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-CCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 997 48999999998743 234443 34678899999987665 478999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~~l 221 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 221 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EeCHHHH
Confidence 999999999999888887654 7899999999999999999999999999975 4666664
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=378.23 Aligned_cols=204 Identities=28% Similarity=0.401 Sum_probs=177.8
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEE
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIG 402 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~ 402 (568)
+.++|+++||+++|++++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..||
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 457899999999994356799999999999999999999999999999999999999999998753 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL 475 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL 475 (568)
|++|++. +|+.+|+.+++... .+.+. +.+.++|+.++|.+..+ +++.+|||||||||+|||||+.+|+||
T Consensus 91 ~v~Q~~~--l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-r~~~~LSGGq~QRvalArAL~~~P~lL 167 (355)
T 1z47_A 91 LVFQNYA--LFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-RFPHELSGGQQQRVALARALAPRPQVL 167 (355)
T ss_dssp EECGGGC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEecCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999874 88999999987532 23332 35678899999987765 478999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 476 ILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 476 lLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 168 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 234 (355)
T 1z47_A 168 LFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEVY 234 (355)
T ss_dssp EEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999999998888654 6799999999999999999999999999975 46766653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=363.15 Aligned_cols=199 Identities=25% Similarity=0.358 Sum_probs=172.9
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
++|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.. +..|+|++|++. ++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--~~~i~~v~q~~~--~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--YQSIGFVPQFFS--SP 78 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--CSCEEEECSCCC--CS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--eccEEEEcCCCc--cC
Confidence 37999999999931678999999999999999999999999999999999999999999984 356999999874 66
Q ss_pred CCCCHHHHHHHhc----C----CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 414 PDDTPCEYLMKLF----N----LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 414 ~~~~~~e~l~~~~----~----~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+..|+.+++.... + .. .+.+.++++.+||....+ +++.+|||||||||+|||||+.+|+||||||||+
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-REFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 6789999875421 1 12 234678899999987665 4789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+ + ..|+.+++.
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHHh
Confidence 99999999999998765 6799999999999999999999999999 5 457777653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=370.54 Aligned_cols=204 Identities=24% Similarity=0.327 Sum_probs=174.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-------------Ce
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------RL 399 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------~~ 399 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +.
T Consensus 19 ~~~l~~~~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 19 HMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp CEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CceEEEEeEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4589999999999 667899999999999999999999999999999999999999999998754 13
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-------C-CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-------N-LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-------~-~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
.|||++|++...++...|+.+++.... + .. .+.+.++|+.+||..... +++.+|||||||||+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqRv~lAraL 176 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-QYIGYLSTGEKQRVMIARAL 176 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHH
Confidence 599999987433444569999875321 1 12 234677899999987655 47899999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceE--EEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGV--ILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tv--i~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+.+|+||||||||+|||+.++..+.++|.++ +.|| |+||||++++..+||++++|++|+++ ..|+.+++.
T Consensus 177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 251 (279)
T 2ihy_A 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI-QQGAVEDIL 251 (279)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEE-EEEEHHHHC
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999999998765 5789 99999999999999999999999997 457777663
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=375.68 Aligned_cols=200 Identities=25% Similarity=0.341 Sum_probs=175.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 58999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++.... +.+ .+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-KPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 987 4889999999986432 222 2357789999999877654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|+|+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 222 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDEVY 222 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46776653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=357.94 Aligned_cols=197 Identities=26% Similarity=0.378 Sum_probs=170.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| ++ +|+|+||+|++ ++++|+||||||||||||+|+|+++|++|+|.++. +..|||++
T Consensus 1 ml~~~~l~~~y-~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRL-GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEE-TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEe-CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 46899999999 44 59999999999 99999999999999999999999999999998753 34699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
|++ .+++.+|+.+++...... ..+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-RKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-CCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCC--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 987 378888999987643211 1245678899999987665 47899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.+++.
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 215 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999998764 6799999999999999999999999999974 56766653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=375.19 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=174.9
Q ss_pred eEEEEeeEEEeCCCce--eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------C
Q psy16366 335 VLGLHDVTFGYPGGKV--LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------R 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~--il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~ 398 (568)
+|+++||+++| ++++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +
T Consensus 3 ~l~i~~l~~~y-~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEE-GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEE-CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 58999999999 5667 99999999999999999999999999999999999999999997643 2
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..|||++|++ .+|+.+|+.+++.... +.+. +.+.++|+.++|.+..+ +++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHhC
Confidence 4699999987 4889999999986432 2332 35678899999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+++++.
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~l~ 229 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLY 229 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 9999999999999999999998888654 6799999999999999999999999999975 46666643
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=375.24 Aligned_cols=200 Identities=26% Similarity=0.358 Sum_probs=175.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEES-SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 58999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++... .+.+. +.+.++++.++|.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-YPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9874 88999999987532 23332 346788999999887664 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~~~ 222 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VGTPDEVY 222 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46766653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=361.08 Aligned_cols=202 Identities=28% Similarity=0.390 Sum_probs=173.3
Q ss_pred eEEEEeeEEEeC-CC---ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEE
Q psy16366 335 VLGLHDVTFGYP-GG---KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~-~~---~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~ 402 (568)
+|+++||+++|+ ++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999994 24 5799999999999999999999999999999999999999999998764 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcC--C----CHHHHHHHHHhCCCC--CccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFN--L----PYEKSRRQLGMFGLP--SYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~--~----~~~~~~~~L~~~~l~--~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
|++|++.. ++...|+.+++..... . ..+.+.++++.+||. ...+ +++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPED-QFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKD-RVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGG-GCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTT-CCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchh-hcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCccccc-CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99998632 3446799998754211 1 245678899999998 6655 47899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|+.++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 226 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF-DGTRMEFL 226 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE-EEEHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5799999999999999999999999999964 56666654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=373.43 Aligned_cols=198 Identities=22% Similarity=0.321 Sum_probs=174.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 1 ml~~~~l~~~y-~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKW-KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEEC-SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEE-CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 47899999999 566 99999999999999999999999999999999999999999998764 23599999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
|++ .+|+.+|+.+++... .+. ..+.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~-~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcC-ChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 987 488999999987532 122 22667889999999887664 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 482 NNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++
T Consensus 156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~~ 215 (348)
T 3d31_A 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEI 215 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999998888654 6799999999999999999999999999975 4666664
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-44 Score=374.90 Aligned_cols=200 Identities=25% Similarity=0.368 Sum_probs=171.4
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| +++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +..|||+|
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEE-CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 59999999999 677899999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc---CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF---NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~---~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++. +|+.+|+.+++.... +.+. +.+.++|+.++|.+..++ ++.+|||||||||+|||||+.+|+|||||
T Consensus 90 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P~lLLLD 166 (372)
T 1v43_A 90 QSYA--VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMD 166 (372)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9874 889999999986432 2332 346788999999877654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 167 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 230 (372)
T 1v43_A 167 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVY 230 (372)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999998888654 6799999999999999999999999999975 46766653
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=374.77 Aligned_cols=200 Identities=24% Similarity=0.373 Sum_probs=174.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
+|+++||+++| +++++|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++. +.
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 58999999999 677899999999999999999999999999999999999999999997643 23
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.|||+||++. +|+.+|+.+++... .+.+. +.+.++|+.++|.+..+. ++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-KPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-CGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-CcccCCHHHHHHHHHHHHHhcCC
Confidence 5999999874 88999999987532 23333 346788999999877654 78999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|+++++.
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l~ 228 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEVY 228 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHHH
Confidence 999999999999999999988888654 6799999999999999999999999999975 46766653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=357.07 Aligned_cols=202 Identities=23% Similarity=0.359 Sum_probs=169.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCC------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPR------------ 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 398 (568)
.++|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+ ++|++|+|.+...
T Consensus 18 ~~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4689999999999 678899999999999999999999999999999999999 4789999987542
Q ss_pred eeEEEEecCCCCCCCCCCCHHHHHHHh-------cC---CCH----HHHHHHHHhCCCCCccccCCCC-CCCHhHHHHHH
Q psy16366 399 LRIGKFDQHSGEHLFPDDTPCEYLMKL-------FN---LPY----EKSRRQLGMFGLPSYAHTIPIR-DLSGGQKARVA 463 (568)
Q Consensus 399 ~~i~~~~q~~~~~l~~~~~~~e~l~~~-------~~---~~~----~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqRv~ 463 (568)
..++|++|++. +++.+|+.+++... .+ .+. +.+.++|+.+|+......+++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 23899999874 67888888876421 11 122 3467889999997433334666 59999999999
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHHHH
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||||+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||++++|++|+++. .|+.++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK-SGDFTLV 252 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE-EECTTHH
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999999999999999999999999876 46999999999999886 89999999999974 4665554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=352.60 Aligned_cols=199 Identities=25% Similarity=0.413 Sum_probs=167.5
Q ss_pred eEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-++++||+++|+ +++++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 378999999994 356899999999999999999999999999999999999999999998754 23599
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. ++. .|+.+++.... ....+.+.+++..+++...... .++.+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999874 555 59999885422 2345566677777777543322 24689999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.. ||++++|++|+++. .|+.+++
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~l 230 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVE-QGKHKEL 230 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEE-EECHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999876 6799999999999865 99999999999974 5666654
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=355.34 Aligned_cols=196 Identities=23% Similarity=0.337 Sum_probs=172.8
Q ss_pred eEEEEeeEEEeCCC----ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG----KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~----~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~ 402 (568)
+|+++||+++| ++ +++|+++||+|+ |++++|+||||||||||||+|+|++ |++|+|.++. +.+++
T Consensus 1 ml~~~~l~~~y-~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~ 77 (263)
T 2pjz_A 1 MIQLKNVGITL-SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS 77 (263)
T ss_dssp CEEEEEEEEEE-EEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEE
T ss_pred CEEEEEEEEEe-CCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheE
Confidence 47899999999 44 689999999999 9999999999999999999999999 9999998764 33699
Q ss_pred -EEecCCCCCCCCCCCHHHHHHHh---cCCCHHHHHHHHHhCCCC-CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEE
Q psy16366 403 -KFDQHSGEHLFPDDTPCEYLMKL---FNLPYEKSRRQLGMFGLP-SYAHTIPIRDLSGGQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 403 -~~~q~~~~~l~~~~~~~e~l~~~---~~~~~~~~~~~L~~~~l~-~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlL 477 (568)
|++|++. + ..|+.+++... .....+.+.++++.++|. ...+ +++.+|||||||||+|||||+.+|++|||
T Consensus 78 ~~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 78 TNLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-RKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp ECCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-SBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EEeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999874 3 78999887532 244566788999999998 6655 47899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc-eEEEEECCeEEEEcCCHHHHH
Q psy16366 478 DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC-ELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 478 DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~-~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||++||+.++..+.+.|.++..|||+||||++++..+|+ ++++|++|+++. .|+.+++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-EEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999886699999999999999999 999999999974 56766553
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=361.13 Aligned_cols=202 Identities=27% Similarity=0.368 Sum_probs=170.5
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
..|+++||+|+|++++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +..||
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 4699999999996667899999999999999999999999999999999999999999998764 24699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++.... ....+.+.+.+..+++...... .+..+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--LFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--CCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--cCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999974 664 59999886432 2345556666666555432211 24578999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+.. ||+|++|++|+++. .|+.+++.+
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVE-RGRHEALLS 277 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999875 6799999999999987 99999999999975 577777643
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=355.21 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=167.5
Q ss_pred CeEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||+++|++ .+++|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 57999999999943 16799999999999999999999999999999999999999999998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcC-CCH-HH---------HHHHHHhC--CCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFN-LPY-EK---------SRRQLGMF--GLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~-~~~-~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
|+|++|++. +++ .|+.+++..... ... .. +.+++..+ |+..... +++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVG-ETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCC-GGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhc-CCcCCCCHHHHHHHHHHHH
Confidence 999999874 565 599998864321 111 11 23456666 6765554 4689999999999999999
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++.. ||++++|++|+++. .|+.+++.
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~-~g~~~~l~ 244 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE-QGTHLQLM 244 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE-EECHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999999999999999999999876 4699999999999975 99999999999974 57777654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=345.13 Aligned_cols=199 Identities=25% Similarity=0.372 Sum_probs=163.6
Q ss_pred CeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCC
Q psy16366 334 PVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 334 ~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
.+|+++||+++|+ +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++. +|+|++|++. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 3789999999995 246899999999999999999999999999999999999999999999876 5999999874 5
Q ss_pred CCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccc----------cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 413 FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAH----------TIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 413 ~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~----------~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
++. |+.+++..............+..+++..... ..++.+|||||||||+|||||+.+|++|||||||+
T Consensus 81 ~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts 159 (229)
T 2pze_A 81 MPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 159 (229)
T ss_dssp CSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 664 9999886432223333444555555432111 12457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 483 NLDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 483 ~LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
+||+.+...+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 160 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 217 (229)
T ss_dssp TSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEE-EECHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 99999999999974 443 579999999999986 599999999999974 56666553
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=352.79 Aligned_cols=197 Identities=24% Similarity=0.381 Sum_probs=164.3
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCC------------ee
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPR------------LR 400 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~ 400 (568)
+|+++||+++| +++++|+||||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.++.. ..
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 68999999999 667899999999999999999999999999999999998 8899999987531 23
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHh----cC--CC----HHHHHHHHHhCCCC-CccccCCCCC-CCHhHHHHHHHHHHH
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKL----FN--LP----YEKSRRQLGMFGLP-SYAHTIPIRD-LSGGQKARVALAELT 468 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~----~~--~~----~~~~~~~L~~~~l~-~~~~~~~~~~-LSgGqkqRv~lA~al 468 (568)
++|++|++. +++.+|+.+++... .+ .. .+.+.++|+.+|+. ...+ +++.+ |||||||||+|||||
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGqkQrv~iAraL 158 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-RYLNEGFSGGEKKRNEILQLL 158 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-SBTTCC----HHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-CCcccCCCHHHHHHHHHHHHH
Confidence 789999874 67888998876421 12 12 23467789999995 4444 57888 999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhh-CceEEEEECCeEEEEcCCHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRET-DCELWALEKKNIRKFNGDFD 536 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~-~~~i~~l~~g~i~~~~g~~~ 536 (568)
+.+|+||||||||+|||+.++..+.+.|.++ +.|||+||||++++..+ ||++++|++|+++. .|+.+
T Consensus 159 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 159 VLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp HHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE-EESHH
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE-EeCHH
Confidence 9999999999999999999999999999876 46999999999999988 59999999999974 46665
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-44 Score=354.21 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=170.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++||+++|++++++|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.++. +..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 478999999995456899999999999999999999999999999999999999999998643 245999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +++ .|+.+++... .....+.+.++++.+++...... .++.+|||||||||+|||||+.+
T Consensus 81 v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~ 157 (243)
T 1mv5_A 81 VSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (243)
T ss_dssp ECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcC
Confidence 999874 565 4999987532 12345667788888888765432 24579999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.+...+.+.|.++ +.|||+||||++++. .||++++|++|+++ ..|+.+++..
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEE-EeCCHHHHHh
Confidence 9999999999999999999888888765 679999999999986 59999999999986 4677777643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=349.54 Aligned_cols=195 Identities=26% Similarity=0.327 Sum_probs=171.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~ 403 (568)
+|+++||+++ ++|+|+||+|.+|++++|+||||||||||||+|+|+++|+ |+|.++.. ..++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 7899999975 5899999999999999999999999999999999999999 99987642 35999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC-------e
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD-------I 474 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~-------l 474 (568)
++|++. +++..|+.+++.... ....+.+.++++.+|+....+ +++.+|||||||||+|||||+.+|+ +
T Consensus 78 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 999874 677889999886421 123566788999999987665 4789999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|||||||+|||+.++..+.+.|.++ +.|||+||||++++..+|+++++|++|+++. .|+.+++.
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEEHHHHS
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999998765 5799999999999999999999999999974 56776653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=343.20 Aligned_cols=189 Identities=25% Similarity=0.353 Sum_probs=163.3
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEec
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQ 406 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q 406 (568)
..+|+++||+++| ++ ++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++.. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y-~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGY-DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEES-SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEe-CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 3589999999999 56 8999999999999999999999999999999999999999999988652 46999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
++. +++..|+.+++... .+ ...+.+.++++.+|+... .+++.+|||||||||+|||||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 874 67788999987432 12 235667889999999876 4578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeE
Q psy16366 482 NNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNI 528 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i 528 (568)
++||+.++..+.+.|.++ +.|||+||||++++..+|+++|+ .+|+|
T Consensus 162 s~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 999999999999998765 46999999999999998888764 45554
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=345.12 Aligned_cols=198 Identities=23% Similarity=0.306 Sum_probs=162.0
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
+|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++. .|+|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999942 46899999999999999999999999999999999999999999999876 5999999873 3
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCC------Cc----cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLP------SY----AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~------~~----~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
...|+.+++............+++..+++. .. ...+++.+|||||||||+|||||+.+|+||||||||++
T Consensus 78 ~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 157 (237)
T 2cbz_A 78 QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 157 (237)
T ss_dssp CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 467999988643222222233333333321 10 11346789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH---hc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 484 LDIESIDALAEAIK---NY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 484 LD~~~~~~l~~~l~---~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.+...+.+.|. ++ +.|||+||||++++. .||++++|++|+++. .|+++++.
T Consensus 158 LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~ 216 (237)
T 2cbz_A 158 VDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQELL 216 (237)
T ss_dssp SCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHHh
Confidence 99999999999984 32 579999999999985 699999999999974 57776654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=344.04 Aligned_cols=200 Identities=27% Similarity=0.363 Sum_probs=166.8
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
++|+++||+++|++. +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++. +..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999432 4699999999999999999999999999999999999987 89998754 235
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc----------ccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA----------HTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|+|++|++. ++. .|+.+++.... ....+.+.+.+..+++.... ...++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 999999974 565 59999876421 23445566777777764321 12356899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 241 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-KGTHKDLL 241 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-EECHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 569999999999986 599999999999974 57776654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=357.18 Aligned_cols=200 Identities=26% Similarity=0.339 Sum_probs=172.6
Q ss_pred CCeEEEEeeEEEeC-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 333 PPVLGLHDVTFGYP-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 333 ~~~l~~~~v~~~y~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
...|+++||+++|+ ++.++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++. +..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995 35679999999999999999999999999999999999998 899998764 246
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCC-----------CCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRD-----------LSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqRv~lA~al~ 469 (568)
|||+||++. +|+ .|+.+++........+++.++++.++|....+. ++.. |||||||||+|||||+
T Consensus 96 ig~v~Q~~~--lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~-~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 96 FGVIPQKVF--IFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ-FPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEEESCCCC--CCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTT-STTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEEcCCcc--cCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhh-cccccccccccccccCCHHHHHHHHHHHHHh
Confidence 999999974 665 599998753334456778899999999876664 5566 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|+||||||||++||+.++..+.+.|++. +.|+|+||||++.+. .||+|++|++|++.. .|+++++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~-~g~~~el~ 241 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQ-YDSILELY 241 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEE-ESSHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 569999999998765 599999999999975 46666643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=338.00 Aligned_cols=195 Identities=24% Similarity=0.363 Sum_probs=150.8
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
+.|+++||++.+ +++|+++||+|++|++++|+||||||||||||+|+|+++|++|+|.++. +|+|++|++. ++
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IM 111 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CC
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cC
Confidence 468999999864 5799999999999999999999999999999999999999999999876 5999999874 56
Q ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 414 PDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 414 ~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
+. |+.+++. ............+..+++...... .++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 112 ~~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 189 (290)
T 2bbs_A 112 PG-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (290)
T ss_dssp SS-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred cc-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCccc
Confidence 64 9999887 322233334445555555432111 23579999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 484 LDIESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 484 LD~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||+.++..+.+.+ .++ +.|||+||||++++. .||++++|++|+++. .|+.+++.
T Consensus 190 LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 246 (290)
T 2bbs_A 190 LDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSELQ 246 (290)
T ss_dssp CCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHHh
Confidence 9999999999974 333 579999999999986 599999999999974 57777664
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=359.87 Aligned_cols=201 Identities=29% Similarity=0.387 Sum_probs=172.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999543 6799999999999999999999999999999999999999999998754 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+ .|+.+++.... +.+.+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 99999974 665 49999886432 3456677888888877644332 135799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||++++|++|+++. .|+.+++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999876 579999999999997 699999999999974 57777654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=360.30 Aligned_cols=202 Identities=28% Similarity=0.361 Sum_probs=172.7
Q ss_pred CeEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999533 6899999999999999999999999999999999999999999998764 2369
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|+ .|+.+++.... +.+.+++.++++.+++.+.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 99999974 666 49999986432 3456778888888877543322 245799999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+||||++.+. .||++++|++|+++. .|+.+++.+
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEE-ecCHHHHHH
Confidence 999999999999999999999999998765 679999999999986 699999999999975 577776643
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=356.81 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=169.9
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 35799999999999999999999999999999999999999999998765 2469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|++. +|+. |+.|++.... ....+++.+.++..++...... .+..+|||||||||+|||||+.
T Consensus 418 ~~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--LFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--CCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--cCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999974 6655 9999886432 3455667777776665432221 1346899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+|++|||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||++++|++|++++ .|+.+++.+
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el~~ 564 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIA 564 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999998765 5799999999999865 99999999999975 578777643
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=358.86 Aligned_cols=202 Identities=28% Similarity=0.386 Sum_probs=171.4
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
.-++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..++ +.+++
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 3599999999996567899999999999999999999999999999999999999999998764 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccCC----------CCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTIP----------IRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~~----------~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++. +|. .|+.+++... ...+.+++.+.++.+++.......| ..+|||||||||+|||||+.+
T Consensus 433 ~v~Q~~~--lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 433 IVLQDTI--LFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp EECTTCC--CCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EEeCCCc--ccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 665 5999988642 2234556777777776654333222 268999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|++|||||||++||+.+...+.+.|.+. +.|+|+||||++.+.. ||++++|++|++++ .|+.+++.+
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999998765 6799999999999975 99999999999974 688877643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=354.09 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=169.1
Q ss_pred CeEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 334 PVLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
..++++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|..+. +.+|
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 46999999999953 46799999999999999999999999999999999999999999998764 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
+|++|++. +|.. |+.|++.... ....+++.+.++..++ +.... .+..+|||||||||+|||||+
T Consensus 420 ~~v~Q~~~--lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 420 SAVPQETV--LFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEECSSCC--CCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHHHHHH
T ss_pred EEECCCCc--CcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHHHHHH
Confidence 99999974 6654 9999885332 2345555555555443 22222 356899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||++||+.+...+.+.|.+. +.|+|+||||++.+. .||++++|++|++++ .|+.+++.+
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELLE 566 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999875 579999999999986 799999999999975 578877654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=354.51 Aligned_cols=295 Identities=19% Similarity=0.233 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHhcCCCc------cCCCch---------HHHHH---HhccCCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGLGFTT------IYIPSS---------RVHEI---MRTWKKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~~~------L~~ePn---------~L~~~---l~~~~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+..-... +||||. ||.++ |+.++.|||+||||++++. .||+|++|
T Consensus 380 LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~aD~ii~lgpgaG 458 (842)
T 2vf7_A 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RADWLVDVGPEAG 458 (842)
T ss_dssp SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hCCEEEEeCCCcc
Confidence 466777777765543221 789992 55553 4567899999999999886 69999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+...... .. . + .. .. . .
T Consensus 459 ~~~G~iv-~~g~~~~~~~~~~~~~----~~---------~------------------l-----~~---~~----~--~- 491 (842)
T 2vf7_A 459 EKGGEIL-YSGPPEGLKHVPESQT----GQ---------Y------------------L-----FA---DR----H--T- 491 (842)
T ss_dssp GGCCSEE-EEECGGGGGGCTTCHH----HH---------H------------------H-----HT---CC----C--C-
T ss_pred cCCCEEE-EecCHHHHHhchHHHH----HH---------H------------------h-----hh---cc----c--c-
Confidence 577765 5788887643110000 00 0 0 00 00 0 0
Q ss_pred cCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHH-HhcCc------
Q psy16366 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNL-LKGEL------ 386 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~-l~G~~------ 386 (568)
+ +.......++|+++++++. .|+||||+|++|+++||+|+||||||||+++ |+|++
T Consensus 492 --~---------~~~~~~~~~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~ 554 (842)
T 2vf7_A 492 --E---------PHTPREPAGWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQ 554 (842)
T ss_dssp --C---------CCCCCCCSCEEEEEEEEET------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC
T ss_pred --c---------ccccCCCCceEEEEeeeec------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcC
Confidence 0 0001123468999999852 5999999999999999999999999999996 77554
Q ss_pred -CCCccEEE-------------EC---CCeeEEEEecCCCCC--------------------------------------
Q psy16366 387 -TPNKGELR-------------KS---PRLRIGKFDQHSGEH-------------------------------------- 411 (568)
Q Consensus 387 -~p~~G~i~-------------~~---~~~~i~~~~q~~~~~-------------------------------------- 411 (568)
+|+.|.+. .. ...++.++.|.+...
T Consensus 555 ~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~ 634 (842)
T 2vf7_A 555 PVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSF 634 (842)
T ss_dssp -----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCS
T ss_pred CCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccc
Confidence 35444431 00 001133444433210
Q ss_pred ---------------------CCC------------------------CCCH--------HHHHHHhcCCC-HHHHHHHH
Q psy16366 412 ---------------------LFP------------------------DDTP--------CEYLMKLFNLP-YEKSRRQL 437 (568)
Q Consensus 412 ---------------------l~~------------------------~~~~--------~e~l~~~~~~~-~~~~~~~L 437 (568)
+++ ..++ .+.+....... ...+.++|
T Consensus 635 n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L 714 (842)
T 2vf7_A 635 NVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTL 714 (842)
T ss_dssp SSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHH
T ss_pred cccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHH
Confidence 000 1122 22211111111 23456789
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC---CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN---PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDER 511 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~---p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~ 511 (568)
..+||......+++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.|||+||||++
T Consensus 715 ~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 715 REVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 9999986443457899999999999999999996 7999999999999999999998888654 679999999999
Q ss_pred HHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 512 LIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 512 ~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
++ ..||++++| .+|+++ ..|+++++.
T Consensus 795 ~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 795 VV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp HH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred HH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 99 689999999 688886 467776653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=343.91 Aligned_cols=295 Identities=24% Similarity=0.309 Sum_probs=192.5
Q ss_pred CChHHHHHHHHHhcCC---C---ccCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGLGF---T---TIYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~---~---~L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+..-. . -++|||. +|.++++++ |.|||+||||++++.. ||+|++|
T Consensus 465 LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-aD~ii~lgpgag 543 (916)
T 3pih_A 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-ADHIIDIGPGGG 543 (916)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-CSEEEEEESSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEEEEcCCcc
Confidence 4667777766654321 1 1789992 666666543 6899999999999976 9999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+.... +... ... . ... .
T Consensus 544 ~~~G~iv-~~G~~~e~~~~~~~------------------------~~~~-------~~l-----~--~~~----~---- 576 (916)
T 3pih_A 544 TNGGRVV-FQGTVDELLKNPDS------------------------SLTG-------EYL-----S--GKR----K---- 576 (916)
T ss_dssp GGCSEEE-EEECHHHHHHSCTT------------------------CHHH-------HHH-----H--SSS----C----
T ss_pred cCCCEEE-EeechhhhhcCchh------------------------cchh-------hhh-----h--ccc----c----
Confidence 788886 56887765321000 0000 000 0 000 0
Q ss_pred cCCccceeeeecCCCCCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHH---------HHHhc
Q psy16366 314 EKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---------NLLKG 384 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl---------k~l~G 384 (568)
...+.........+.+++++ ...|+||||+|+.|+++||+||||||||||+ +++.+
T Consensus 577 ---------~~~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~ 641 (916)
T 3pih_A 577 ---------ITVNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHK 641 (916)
T ss_dssp ---------CCCCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHC
T ss_pred ---------cccccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcc
Confidence 00011111112346666543 3469999999999999999999999999997 44544
Q ss_pred CcCCCc------cE------EEECC----------------------------------------------------Cee
Q psy16366 385 ELTPNK------GE------LRKSP----------------------------------------------------RLR 400 (568)
Q Consensus 385 ~~~p~~------G~------i~~~~----------------------------------------------------~~~ 400 (568)
...+.. |. +.... ...
T Consensus 642 ~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g 721 (916)
T 3pih_A 642 TKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQG 721 (916)
T ss_dssp CCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTT
T ss_pred ccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccC
Confidence 433322 21 11000 001
Q ss_pred EEEEecCCCCCCCC--------------------------------CCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCccc
Q psy16366 401 IGKFDQHSGEHLFP--------------------------------DDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAH 447 (568)
Q Consensus 401 i~~~~q~~~~~l~~--------------------------------~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~ 447 (568)
.|++.++.. +++ .+++.+.+......+ ...+.+.|..+||.....
T Consensus 722 ~G~i~~e~~--flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~l 799 (916)
T 3pih_A 722 QGYVKIEML--FLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKL 799 (916)
T ss_dssp SSEEEECCT--TSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBT
T ss_pred cceEEEeee--ccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhc
Confidence 233333221 111 123333332221111 234567899999976544
Q ss_pred cCCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEE
Q psy16366 448 TIPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 448 ~~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|.+.|+++ +.|||+||||++++.. ||+|+
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-ADrIi 878 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-ADHII 878 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CSEEE
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 5688999999999999999999875 799999999999999999999988764 6799999999999965 99999
Q ss_pred EE------ECCeEEEEcCCHHHHH
Q psy16366 522 AL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 522 ~l------~~g~i~~~~g~~~~~~ 539 (568)
+| .+|+++ ..|+++++.
T Consensus 879 vLgp~gg~~~G~Iv-~~Gtpeel~ 901 (916)
T 3pih_A 879 DLGPEGGKEGGYIV-ATGTPEEIA 901 (916)
T ss_dssp EEESSSGGGCCEEE-EEESHHHHH
T ss_pred EecCCCCCCCCEEE-EEcCHHHHH
Confidence 99 788887 567777654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=345.95 Aligned_cols=199 Identities=29% Similarity=0.458 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc-CcCCCccEEEECCCeeEEEEecCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG-ELTPNKGELRKSPRLRIGKFDQHSGEHLF 413 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~i~~~~q~~~~~l~ 413 (568)
.|...|++++| +++.+|+|+||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|++. .++
T Consensus 435 ~L~~~~ls~~y-g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEE-CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 45566999999 67889999999999999999999999999999999994 22 121 0112235788887642 356
Q ss_pred CCCCHHHHHHH-hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH
Q psy16366 414 PDDTPCEYLMK-LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492 (568)
Q Consensus 414 ~~~~~~e~l~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l 492 (568)
...|+.+++.. ..+. .+.++++|+.+||......+++.+|||||||||+|||||+.+|+||||||||||||+.++..|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 78899998763 1222 567888999999964333458899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 493 AEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 493 ~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.++|++.+.|||+||||++++..+|+++++|++|+++.+.|+++++.+
T Consensus 588 ~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 588 VNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999998778999999999999999999999999999877899988754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=340.29 Aligned_cols=295 Identities=22% Similarity=0.232 Sum_probs=192.8
Q ss_pred CChHHHHHHHHHhc-CCC---c--cCCCch---------HHHHHH---hccCCeEEEEeCCHHHHHhhhceeeEE-----
Q psy16366 178 DAAEPRARRILAGL-GFT---T--IYIPSS---------RVHEIM---RTWKKTLLVVSHDQSFLNNICTDIIHL----- 234 (568)
Q Consensus 178 ~~~~~~~~~~L~~l-g~~---~--L~~ePn---------~L~~~l---~~~~~tvlvVSHd~~~l~~v~d~ii~L----- 234 (568)
.++++++|..|+.. +.. . +||||. ||.++| ++.|.|||+||||++++. .||+|++|
T Consensus 505 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG 583 (972)
T 2r6f_A 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAG 583 (972)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCcc
Confidence 35566666555432 221 1 789992 555544 456899999999999987 59999999
Q ss_pred -cCCeeeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhh
Q psy16366 235 -DMKKLFYYKGNFTLFKKMYVQKRKELTKEYELQEKQIREMKSQGMSKEKAERQHSHKALKEQARKRVQKDDDDEPKELL 313 (568)
Q Consensus 235 -~~g~l~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (568)
++|+++ +.|+++.+.+.... ... ..+ . ... ..
T Consensus 584 ~~gG~iv-~~G~~~e~~~~~~s-------------------------lt~------~~l-----~---g~~----~~--- 616 (972)
T 2r6f_A 584 IHGGEVV-AAGTPEEVMNDPNS-------------------------LTG------QYL-----S---GKK----FI--- 616 (972)
T ss_dssp GGCCSEE-EEECTTTTTTCTTC-------------------------TTH------HHH-----H---TSS----CC---
T ss_pred CCCCEEE-EecCHHHHHhhhHH-------------------------HHH------HHh-----c---CCc----cc---
Confidence 677776 56777765321000 000 000 0 000 00
Q ss_pred cCCccceeeeecCCC-CCCCCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh-cCc-----
Q psy16366 314 EKPREYIVKFRFPNP-PYLPPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GEL----- 386 (568)
Q Consensus 314 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~-G~~----- 386 (568)
..|.. .....++|++++++. ..|+||||+|+.|+++||+|+||||||||+++|+ |.+
T Consensus 617 ----------~~~~~~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~ 680 (972)
T 2r6f_A 617 ----------PIPAERRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLH 680 (972)
T ss_dssp ----------CCCSSCCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHH
T ss_pred ----------cCccccccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 00110 111246899999862 3699999999999999999999999999999853 322
Q ss_pred --CCCccE-------------EEECC-------C-----------------------eeEEEEecCCCCC----------
Q psy16366 387 --TPNKGE-------------LRKSP-------R-----------------------LRIGKFDQHSGEH---------- 411 (568)
Q Consensus 387 --~p~~G~-------------i~~~~-------~-----------------------~~i~~~~q~~~~~---------- 411 (568)
.+..|. |.+.. + ..+||++|.+...
T Consensus 681 ~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~ 760 (972)
T 2r6f_A 681 RAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACH 760 (972)
T ss_dssp CCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTT
T ss_pred CCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccc
Confidence 123342 11110 0 0123444432110
Q ss_pred ----------CC------------------------C--------CCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCcccc
Q psy16366 412 ----------LF------------------------P--------DDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHT 448 (568)
Q Consensus 412 ----------l~------------------------~--------~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~~ 448 (568)
+. . .+|+.+.+....... .....++|..+||......
T Consensus 761 g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~ 840 (972)
T 2r6f_A 761 GDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLG 840 (972)
T ss_dssp TCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTT
T ss_pred cccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCccccc
Confidence 00 0 123333332211111 1234578999999863334
Q ss_pred CCCCCCCHhHHHHHHHHHHHccCC---CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTLNNP---DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~~~p---~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||+||||++++. .||++++
T Consensus 841 ~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aDrIiv 919 (972)
T 2r6f_A 841 QPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TADYIID 919 (972)
T ss_dssp CCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCCEEEE
Confidence 588999999999999999999865 999999999999999999999988754 679999999999984 7999999
Q ss_pred E------ECCeEEEEcCCHHHH
Q psy16366 523 L------EKKNIRKFNGDFDDY 538 (568)
Q Consensus 523 l------~~g~i~~~~g~~~~~ 538 (568)
| .+|+++ ..|+++++
T Consensus 920 L~p~gG~~~G~Iv-~~g~~~el 940 (972)
T 2r6f_A 920 LGPEGGDRGGQIV-AVGTPEEV 940 (972)
T ss_dssp ECSSSTTSCCSEE-EEESHHHH
T ss_pred EcCCCCCCCCEEE-EecCHHHH
Confidence 9 688886 45666654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=354.81 Aligned_cols=202 Identities=27% Similarity=0.382 Sum_probs=167.9
Q ss_pred CeEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------Cee
Q psy16366 334 PVLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLR 400 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 400 (568)
.-++++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|..++ +..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 358999999999642 4799999999999999999999999999999999999999999999865 346
Q ss_pred EEEEecCCCCCCCCCCCHHHHHHHhc-CCCHHHHHHHHHhCCCCCcc-------c---cCCCCCCCHhHHHHHHHHHHHc
Q psy16366 401 IGKFDQHSGEHLFPDDTPCEYLMKLF-NLPYEKSRRQLGMFGLPSYA-------H---TIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~~~e~l~~~~-~~~~~~~~~~L~~~~l~~~~-------~---~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|||++|++. +|.. |+.+++.... ....+++.+.+...++.... + .....+|||||||||+|||||+
T Consensus 466 i~~v~Q~~~--l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 466 IGVVSQEPV--LFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp EEEECSSCC--CCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEEcCCCc--cCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 999999984 6655 9999886432 34566666665554432211 1 1245689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||++||+++...+.+.|... +.|+|+|||+++.+.. ||+|++|++|++++ .|+++++.+
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~-~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVE-QGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCC-EECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999988754 6799999999999976 99999999999974 577777643
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=329.66 Aligned_cols=184 Identities=28% Similarity=0.312 Sum_probs=149.9
Q ss_pred EE-EeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE---------EEC---------
Q psy16366 337 GL-HDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL---------RKS--------- 396 (568)
Q Consensus 337 ~~-~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~--------- 396 (568)
++ +||+++| ++. .+++++| +|.+||++||+||||||||||||+|+|+++|++|++ ...
T Consensus 22 ~~~~~ls~~y-g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 22 QLEEDCVHRY-GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp --CCCEEEEC-STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hHhcCcEEEE-CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 44 5899999 454 5899999 999999999999999999999999999999999984 111
Q ss_pred ----CCeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 397 ----PRLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 397 ----~~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
....+++++|.... .++. .++.+++.... ..+.+.++|+.+||....+ +++.+|||||||||+|||||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~-~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~-~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVK-GKVIELLKKAD--ETGKLEEVVKALELENVLE-REIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCC-SBHHHHHHHHC--SSSCHHHHHHHTTCTTTTT-SBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhh-ccHHHHHhhhh--HHHHHHHHHHHcCCChhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 12357788886421 1111 26666554221 1234678999999987654 5889999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
+|+||||||||||||+.++..+.++|+++ +.|||+||||++++..+||++++|.++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999988765 789999999999999999999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.77 Aligned_cols=182 Identities=26% Similarity=0.312 Sum_probs=151.4
Q ss_pred EeeEEEeCCCc-eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE---------EC------------
Q psy16366 339 HDVTFGYPGGK-VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KS------------ 396 (568)
Q Consensus 339 ~~v~~~y~~~~-~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~---------~~------------ 396 (568)
+||+++| ++. .+|+++| +|.+|++++|+||||||||||||+|+|+++|++|++. ..
T Consensus 95 ~~ls~~y-g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRY-GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEEC-STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEE-CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 8999999 555 5899999 9999999999999999999999999999999999851 11
Q ss_pred -CCeeEEEEecCCCC--CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 397 -PRLRIGKFDQHSGE--HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 397 -~~~~i~~~~q~~~~--~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
....+++++|.... .++. .++.+++... ...+.+.++|+.+||....+ +++.+|||||||||+|||||+.+|+
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~-~tv~e~l~~~--~~~~~~~~~L~~lgL~~~~~-~~~~~LSGGekQRvaIAraL~~~P~ 248 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVK-GKVRELLKKV--DEVGKFEEVVKELELENVLD-RELHQLSGGELQRVAIAAALLRKAH 248 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCC-SBHHHHHHHT--CCSSCHHHHHHHTTCTTGGG-SBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred hhhcceEEeechhhhchhhcc-ccHHHHhhhh--HHHHHHHHHHHHcCCCchhC-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 12357788876421 1222 2777766432 12235678999999987665 5789999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECC
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|.++
T Consensus 249 lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 249 FYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999988766 789999999999999999999999865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=350.60 Aligned_cols=199 Identities=29% Similarity=0.382 Sum_probs=170.4
Q ss_pred eEEEEeeEEEeCC--CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 335 VLGLHDVTFGYPG--GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~--~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
-++++||+|+|++ +.++|+|+||+|++|+.+|||||+|||||||+++|.|+++|++|+|..++ +.+|
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 5899999999964 45899999999999999999999999999999999999999999999865 3479
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccccC----------CCCCCCHhHHHHHHHHHHHcc
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAHTI----------PIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~~~----------~~~~LSgGqkqRv~lA~al~~ 470 (568)
+|++|+|. +|. .|+.+++... ...+.+++.++++..++.+..... .-..||||||||++||||+++
T Consensus 495 ~~v~Q~~~--Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA--LFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce--eeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999984 554 5899998643 245678888888777654322211 235899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|+|||||||||+||+++...+.+.|.++ +.|+|+|||++..+. .||+|++|++|+|++ .|+++++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEEE-EECHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeeec-cCCHHHH
Confidence 99999999999999999999999999876 689999999999986 589999999999986 4777665
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=338.20 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=125.8
Q ss_pred CCeEEEEeeEEEeCCCceeeeee-eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEH 411 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 411 (568)
.+.+.++++++.|++ |+.+ +..|.+|++++|+||||||||||+++++|...|. |+ ..+.+.+|++..
T Consensus 255 ~~~~~~~~l~~g~~~----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~- 322 (525)
T 1tf7_A 255 TQRSSNVRVSSGVVR----LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA- 322 (525)
T ss_dssp CCCCCCCEECCSCHH----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH-
T ss_pred ccccccceeecChHH----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH-
Confidence 345677888877732 3322 4599999999999999999999999999999885 54 124455555321
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----
Q psy16366 412 LFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE---- 487 (568)
Q Consensus 412 l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~---- 487 (568)
.+.... ..++++..+ +..+|+..... .++..|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 -----~l~~~~-~~~g~~~~~----~~~~g~~~~~~-~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~ 390 (525)
T 1tf7_A 323 -----QLLRNA-YSWGMDFEE----MERQNLLKIVC-AYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNN 390 (525)
T ss_dssp -----HHHHHH-HTTSCCHHH----HHHTTSEEECC-CCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHH
T ss_pred -----HHHHHH-HHcCCCHHH----HHhCCCEEEEE-eccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChH
Confidence 111221 123444322 22455544443 356899999999999999999999999999 99999998
Q ss_pred -HHHHHHHHH---HhcCceEEEEecch----------HHHHhhCceEEEEECCe
Q psy16366 488 -SIDALAEAI---KNYQGGVILVSHDE----------RLIRETDCELWALEKKN 527 (568)
Q Consensus 488 -~~~~l~~~l---~~~~~tvi~vsHd~----------~~i~~~~~~i~~l~~g~ 527 (568)
.+..+.+++ ++.+.|||+||||. ..+..+||++++|.+|+
T Consensus 391 ~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 391 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 777665555 45678999999999 88888999999998765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=313.10 Aligned_cols=186 Identities=26% Similarity=0.335 Sum_probs=143.7
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------C----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------R---------- 398 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~---------- 398 (568)
|++++|+++...+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|.... .
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57889954445677777 5899999999999999999999999999999999873110 0
Q ss_pred ---eeEEEEecCCCC---CC-CCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 ---LRIGKFDQHSGE---HL-FPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 ---~~i~~~~q~~~~---~l-~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
....+.+|.... .+ ....++.+.+........+.+.++++.+||....+ +++.+|||||||||+||+||+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK-RDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGG-SCTTTCCHHHHHHHHHHHHHHSC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhC-CChHHCCHHHHHHHHHHHHHHhC
Confidence 001111221100 00 01112333333222334567888999999987665 47899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|.++.
T Consensus 240 p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999998876 5799999999999999999999998764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=312.21 Aligned_cols=190 Identities=22% Similarity=0.252 Sum_probs=130.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHH---------------------HHHhcCcCCCccEEE-------EC---
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFL---------------------NLLKGELTPNKGELR-------KS--- 396 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~--- 396 (568)
...+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. ..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 999999999866553 21
Q ss_pred ----CCeeEEEEecCCC-----------------CCCCCCCCHHHHHHHhcCC--C---H----------HHHHHHHHhC
Q psy16366 397 ----PRLRIGKFDQHSG-----------------EHLFPDDTPCEYLMKLFNL--P---Y----------EKSRRQLGMF 440 (568)
Q Consensus 397 ----~~~~i~~~~q~~~-----------------~~l~~~~~~~e~l~~~~~~--~---~----------~~~~~~L~~~ 440 (568)
.+..+|+++|.+. ...+..+++.+++...... . . ......|..+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1223444444321 1122344555554321110 0 0 0111348889
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHh
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRE 515 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~ 515 (568)
||......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.+.|+++ +.|||+||||++++.
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~- 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML- 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-
Confidence 998654456889999999999999999999998 99999999999999999999888765 679999999999876
Q ss_pred hCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 516 TDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 516 ~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
.||++++| ++|+++ +.|+++++.
T Consensus 269 ~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~ 297 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 297 (670)
T ss_dssp HCSEEEEECSSSGGGCCSEE-EEECHHHHH
T ss_pred hCCEEEEecccccccCCEEE-EecCHHHHh
Confidence 59999999 788886 567777764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-32 Score=302.31 Aligned_cols=182 Identities=24% Similarity=0.327 Sum_probs=139.2
Q ss_pred eeEEEeCCCceeeeeeeEEE-eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE-----------ECC----------
Q psy16366 340 DVTFGYPGGKVLLEKVNFGL-DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSP---------- 397 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i-~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 397 (568)
+++.+|+.+. |+-..|.+ ++|+++||+||||||||||+|+|+|+++|++|+|. ...
T Consensus 4 ~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4667883332 44444544 59999999999999999999999999999999872 111
Q ss_pred ---CeeEEEEecCCC--CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 398 ---RLRIGKFDQHSG--EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 398 ---~~~i~~~~q~~~--~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
...+....|... ..++ ..++.+.+.... ....+.++++.+++....+ +++.+|||||||||+|||||+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~Qrv~iA~aL~~~p 157 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFL-KGTVNEILTKID--ERGKKDEVKELLNMTNLWN-KDANILSGGGLQRLLVAASLLREA 157 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTC-CSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTT-SBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred hhcccchhhccchhhhhhhhc-cCcHHHHhhcch--hHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCC
Confidence 112333333321 0112 225555443221 1234677899999987665 578999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCe
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKN 527 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~ 527 (568)
+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+++++.+|.
T Consensus 158 ~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 158 DVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999876 6799999999999999999999998653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-33 Score=301.70 Aligned_cols=205 Identities=16% Similarity=0.089 Sum_probs=161.4
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-E-EEECC--CeeEEEEecCC
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-E-LRKSP--RLRIGKFDQHS 408 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~--~~~i~~~~q~~ 408 (568)
.++++++||++.| + ++||+|.+|++++|+||||||||||+|+|+|+++|++| + |.++. +..++|++|+.
T Consensus 116 ~~mi~~~nl~~~y-~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFML-E------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHH-H------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehh-h------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 4688899999998 2 79999999999999999999999999999999999999 8 87653 55688999976
Q ss_pred CC-CCCCCCCHHHHHHHh---cCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH--HccCCCe----EEE
Q psy16366 409 GE-HLFPDDTPCEYLMKL---FNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL--TLNNPDI----LIL 477 (568)
Q Consensus 409 ~~-~l~~~~~~~e~l~~~---~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a--l~~~p~l----LlL 477 (568)
.. .++...++.+++... .+. ..+.+..++..+|+..... +.+|||||||||+|||+ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 31 122334554443110 010 1122445677888876543 67999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHHhcCceEEEEecchH------HHHhhCce-----EEEEE-CCeEEEEcCCHHHHHHHHHH
Q psy16366 478 DE-PTNNLDIESIDALAEAIKNYQGGVILVSHDER------LIRETDCE-----LWALE-KKNIRKFNGDFDDYREKLLT 544 (568)
Q Consensus 478 DE-Pt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~------~i~~~~~~-----i~~l~-~g~i~~~~g~~~~~~~~~~~ 544 (568)
|| ||++||+. ...|.+++++++.|+|+||||.+ ++..+|++ +++|. +|+++ .++.++..+....
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~~~~~~~~ 342 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVYKRSLQRT 342 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHHHHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHHHhhhhHH
Confidence 99 99999999 88888999999999999999988 88899999 99999 99987 6887766432223
Q ss_pred HHhhhh
Q psy16366 545 SLGEAM 550 (568)
Q Consensus 545 ~~~~~~ 550 (568)
.+.+++
T Consensus 343 ~i~~~f 348 (460)
T 2npi_A 343 SIREYF 348 (460)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 344444
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=260.08 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=71.2
Q ss_pred CCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE----EC
Q psy16366 454 LSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL----EK 525 (568)
Q Consensus 454 LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l----~~ 525 (568)
|||||||||+||++|+.+| ++|||||||+|||+.+...|.+.|+++ ++|||+||||++++. .||++++| .+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999988 489999999998874 79999999 89
Q ss_pred CeEEE
Q psy16366 526 KNIRK 530 (568)
Q Consensus 526 g~i~~ 530 (568)
|+++.
T Consensus 375 G~~~~ 379 (415)
T 4aby_A 375 GRTVS 379 (415)
T ss_dssp TEEEE
T ss_pred CceEE
Confidence 98754
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-29 Score=243.04 Aligned_cols=144 Identities=18% Similarity=0.206 Sum_probs=99.7
Q ss_pred EeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE--------CCCeeEEEEecCCCCCCCCC
Q psy16366 344 GYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK--------SPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 344 ~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~--------~~~~~i~~~~q~~~~~l~~~ 415 (568)
+| +++.+|++| .+|++++|+|||||||||||++|+|+ +|++|+|.. ..+..+||++|++.+.+...
T Consensus 9 ~~-g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 9 TL-GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp SH-HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred CH-hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 35 456789986 89999999999999999999999999 999998842 12346888888763322111
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 416 DTPCEYLMKLFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 416 ~~~~e~l~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
... ....... .....+.++++. ++ ||||||+|||||+.+|+||||||||++ +...+.+
T Consensus 83 ~~~--~~~~~~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~ 141 (208)
T 3b85_A 83 LRP--LHDALRDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKM 141 (208)
T ss_dssp THH--HHHHHTTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHH
T ss_pred HHH--HHHHHHHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHH
Confidence 000 0111111 122345555554 33 999999999999999999999999999 8888888
Q ss_pred HHHhc--CceEEEEecchHHHHh
Q psy16366 495 AIKNY--QGGVILVSHDERLIRE 515 (568)
Q Consensus 495 ~l~~~--~~tvi~vsHd~~~i~~ 515 (568)
+|.++ +.||| ||||++++..
T Consensus 142 ~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 142 FLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp HHTTBCTTCEEE-EEEC------
T ss_pred HHHHhcCCCEEE-EECCHHHHhC
Confidence 88876 46888 9999998764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-26 Score=239.41 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=73.7
Q ss_pred CCCCCCCHhHHHHHHHHHHHc------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARVALAELTL------NNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++.+|||||||||+||+||+ .+|++|||||||+|||+.+...+.+.|.++ +.|||+||||+++ ...||+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~ 353 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDR 353 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCE
Confidence 467899999999999999999 799999999999999999999999999876 5799999999998 467899
Q ss_pred EEEEECCeEE
Q psy16366 520 LWALEKKNIR 529 (568)
Q Consensus 520 i~~l~~g~i~ 529 (568)
+++|.+|+++
T Consensus 354 ~~~l~~G~i~ 363 (365)
T 3qf7_A 354 KLRITGGVVV 363 (365)
T ss_dssp EEEEETTEEC
T ss_pred EEEEECCEEE
Confidence 9999999985
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-27 Score=220.81 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=101.4
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
||||+|++|++++|+||||||||||++++.+-... .......|+++|++....+.. ...+.+. ..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~------~~~d~~~g~~~~~~~~~~~~~-~~~~~~~--------~~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEV------ISSDFCRGLMSDDENDQTVTG-AAFDVLH--------YI 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGE------EEHHHHHHHHCSSTTCGGGHH-HHHHHHH--------HH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeE------EccHHHHHHhcCcccchhhHH-HHHHHHH--------HH
Confidence 68999999999999999999999999986643221 111111256666653222111 1111111 11
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH----------------HHHHHHHHHH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE----------------SIDALAEAIK 497 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~----------------~~~~l~~~l~ 497 (568)
.......|...... .....||||||||+||++++.+|++|+|||||++||+. ....+.+.|.
T Consensus 66 ~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~ 143 (171)
T 4gp7_A 66 VSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK 143 (171)
T ss_dssp HHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred HHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence 12223345543333 23567999999999999999999999999999999999 5577777754
Q ss_pred h---cCceEEEEecchHHHHhh
Q psy16366 498 N---YQGGVILVSHDERLIRET 516 (568)
Q Consensus 498 ~---~~~tvi~vsHd~~~i~~~ 516 (568)
+ .+.|+|+||||++++..+
T Consensus 144 ~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 144 GLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp THHHHTCSEEEEECSHHHHHHE
T ss_pred hHHhcCCcEEEEeCCHHHhhhh
Confidence 3 377999999999999764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-26 Score=217.63 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=110.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCC-ccEEEE-----CCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPN-KGELRK-----SPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~-----~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
+++|+||||||||||+++|+|++... .|.... ..+.++||++|++. . .+.+ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~--~------~~~~--------------~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE--G------KKKI--------------F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT--C------CEEE--------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc--H------HHHH--------------H
Confidence 68999999999999999999998532 343211 12356888888751 0 0100 0
Q ss_pred HhCCCCC-ccccCCCCCCCHhHHHHHHHHHH-----HccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcCceEEEEe--
Q psy16366 438 GMFGLPS-YAHTIPIRDLSGGQKARVALAEL-----TLNNPDILILDE--PTNNLDIESIDALAEAIKNYQGGVILVS-- 507 (568)
Q Consensus 438 ~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~a-----l~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~~tvi~vs-- 507 (568)
..+++.. ....+++.+||||||||++||++ ++.+|++||||| ||++||+...+.+.+.+.+.+.|+|++|
T Consensus 60 ~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 60 SSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp EETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred HhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 1111111 12234678899999999999996 999999999999 9999999999999999998777788888
Q ss_pred -cchHHHHhhCceEEEEECCeEEEEc-CCHHHHHHHHHHH
Q psy16366 508 -HDERLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTS 545 (568)
Q Consensus 508 -Hd~~~i~~~~~~i~~l~~g~i~~~~-g~~~~~~~~~~~~ 545 (568)
||.+++..+|++ .+|++..+. .+.+++.+++.+.
T Consensus 140 ~h~~~~~~~i~~r----~~~~i~~~~~~~r~~~~~~l~~~ 175 (178)
T 1ye8_A 140 RDVHPLVKEIRRL----PGAVLIELTPENRDVILEDILSL 175 (178)
T ss_dssp SCCSHHHHHHHTC----TTCEEEECCTTTTTTHHHHHHHH
T ss_pred CCCchHHHHHHhc----CCcEEEEecCcCHHHHHHHHHHH
Confidence 599999999887 345554432 3445555555443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-23 Score=209.86 Aligned_cols=187 Identities=19% Similarity=0.224 Sum_probs=120.6
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHH-
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIV- 136 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v- 136 (568)
.+|+++|++++|+++++|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++...........
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheE
Confidence 47999999999999999999999999999999999999999999999999643 445666665555432221111100
Q ss_pred ---HhccHHHHH-HHHHHHHHhh--ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC-------c-
Q psy16366 137 ---LSADKNRVK-LLKECSKLER--DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT-------T- 195 (568)
Q Consensus 137 ---~~~~~~~~~-l~~~~~~l~~--~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~-------~- 195 (568)
.+....... ...+.-.+.. ........+..++.+.+. .....++++++|..++..-+. +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 000000000 0000000000 011122344555555543 223468888888777654432 2
Q ss_pred --cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 196 --IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 --L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~-g~~~ 233 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVAC-GTPE 233 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 889991 34344344356999999999999999999999999999864 4443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=208.68 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=118.0
Q ss_pred cceEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH----
Q psy16366 58 VDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---- 132 (568)
.+|+++|++++|++ ..+|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHh
Confidence 47999999999975 469999999999999999999999999999999999642 34455555554442111000
Q ss_pred --HHHHHhccHH-HH--HHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc-
Q psy16366 133 --VNIVLSADKN-RV--KLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 133 --~~~v~~~~~~-~~--~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~- 195 (568)
+..+++.... .. ...+.. .+.. ..... ...+..++++.+. .....++++++|..++..-...
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDV-SFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHH-HHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEEcCcccccccCcHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 0001111000 00 000000 0000 00001 1233444444432 2234688888888877654433
Q ss_pred ---cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 ---IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 ---L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .|.++.++.+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~-g~~~~ 230 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ-GNPKE 230 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE-ECHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 889992 34444323488999999999999999999999999999865 55444
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=217.53 Aligned_cols=184 Identities=15% Similarity=0.185 Sum_probs=120.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC----c--hhH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS----D--DSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~----~--~~~ 132 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.|.+.++++... . ...
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCC
Confidence 6999999999999999999999999999999999999999999999999643 3344554444333100 0 000
Q ss_pred HHHHHhccHHHHHHHHHHHHHhh-cc-----CCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKNRVKLLKECSKLER-DE-----SGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~-~~-----~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+++... ...-+...+.+.. +. ......++.++++.+. .....++++++|.+|+..-...
T Consensus 82 ig~vfQ~~~-l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 82 LGYLVQEGV-LFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CEEECTTCC-CCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCc-CCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 111111100 0000000000100 00 0011334555555542 2334688899998887654433
Q ss_pred cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 196 IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 196 L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
|+|||. .|.+++++.+.|+|+||||++++..+||||++|++|++...+.+
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 223 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASP 223 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCH
Confidence 889991 35556667789999999999999999999999999999875443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-23 Score=216.89 Aligned_cols=178 Identities=22% Similarity=0.249 Sum_probs=119.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-----------------EEEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID-----------------LLYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~-----------------i~~~ 121 (568)
.|+++|++++|++..+|+|+||+|.+||+++|+||||||||||||+|+|... |..+. +.++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999999999999999999999999999999999999999999743 23333 3444
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+....+. +..+.+... + ............+..++.+.+. .....++++++|.+|+..-.
T Consensus 81 fQ~~~l~p~ltV~eni~~~------~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFG------L-----KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHH------H-----HHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred ecCCcCCCCCCHHHHHHHH------H-----HHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH
Confidence 454432221 222211100 0 0000000011234444444432 22346888888887765432
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. |+|||. .|.++.++.+.|+|+||||++++..+||||++|++|+++..+.+.+.|
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~ 222 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHH
Confidence 22 889991 455555566899999999999999999999999999998765443333
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=212.69 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=119.6
Q ss_pred cceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH
Q psy16366 58 VDIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~ 133 (568)
.+|+++|++++|++ ..+|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++........
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHH
Confidence 47999999999953 469999999999999999999999999999999999643 344555554444432211110
Q ss_pred -------HHHHhcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 134 -------NIVLSAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 134 -------~~v~~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..+++.. .....+. ...............+..++++.+. .....++++++|..++..-.
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~-~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVA-LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 0011100 0000000 0000000000011234445555442 12346888999988876554
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+|||. .|.++.++.+.|||+||||++++..+||||++|++|+++.. |+.+
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~-g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ-DTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC-CBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 43 889991 45555555689999999999999999999999999999864 4443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=198.87 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=113.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA------ 132 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~------ 132 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+.++++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHh
Confidence 6999999999998899999999999999999999999999999999999642 34455555444432211100
Q ss_pred --HHHHHhccH-----HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 133 --VNIVLSADK-----NRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 133 --~~~v~~~~~-----~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
+..+.+... .....+................+..++.+.+. .....++++++|..++..-...
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 000001000 00000000000000000001223344444432 1234578888888877654443
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
|+|||. .|.++.++ +.|||+||||.+++ .+||+|++|++|+++..
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 889991 33333333 78999999999998 79999999999999754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-23 Score=204.65 Aligned_cols=187 Identities=16% Similarity=0.223 Sum_probs=116.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC--chhHH---
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS--DDSAV--- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~--~~~~~--- 133 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.++++... .....
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCc
Confidence 6999999999998899999999999999999999999999999999999642 3345555444443200 00000
Q ss_pred -HHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 134 -NIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 134 -~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
..+.+.... .....+.... ........ ...++.++.+.+. .....++++++|..++..-+..
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 001110000 0000000000 00000000 1223444444432 1234678888888776544433
Q ss_pred cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. .|.++.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 246 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE-GKPEDL 246 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 889991 34444333 78999999999999999999999999999864 555443
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=199.78 Aligned_cols=187 Identities=13% Similarity=0.183 Sum_probs=115.7
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH-----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA----- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~----- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+.+.+.++.......
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCC
Confidence 46999999999998899999999999999999999999999999999999643 33344444333332111000
Q ss_pred HHHHHhccHH--HHHHHHHHHHHhhcc--CCC-hHHHHHHHHHHHh--------ccCCCChHHHHHHHHHhcCCCc----
Q psy16366 133 VNIVLSADKN--RVKLLKECSKLERDE--SGD-NQLRLTEVYDELK--------SIEADAAEPRARRILAGLGFTT---- 195 (568)
Q Consensus 133 ~~~v~~~~~~--~~~l~~~~~~l~~~~--~~~-~~~~l~~v~~el~--------~~~~~~~~~~~~~~L~~lg~~~---- 195 (568)
+..+.+.... .....+.. .+.... ... ...++.++.+.+. .....+.++++|..++..-...
T Consensus 83 i~~v~q~~~l~~~ltv~enl-~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENL-MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHH-HGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHH-HHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 0000000000 00000000 000000 011 1223344443331 2334688888888776654433
Q ss_pred cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .+.+++++ .+.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 225 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASE 225 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHH
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 889992 33333332 478999999999999999999999999999754 54443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=214.92 Aligned_cols=88 Identities=23% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceE--
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCEL-- 520 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i-- 520 (568)
.++..|||||||||+||++|+ .+|++|||||||++||+.....+.+.|.++ +.+||+|||+.++ ..+||++
T Consensus 215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~~~~ 293 (322)
T 1e69_A 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADLLHG 293 (322)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSEEEE
T ss_pred CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCceEEE
Confidence 467899999999999999997 689999999999999999999999999877 5689999999764 5678976
Q ss_pred EEEECCeEEEEcCCHHH
Q psy16366 521 WALEKKNIRKFNGDFDD 537 (568)
Q Consensus 521 ~~l~~g~i~~~~g~~~~ 537 (568)
++|.+|.......+.++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 78888876555555444
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=204.91 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=115.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC----------C
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA----------S 128 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~----------~ 128 (568)
+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||+|+|+|... |..+.+.+.++++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccccccccccc
Confidence 6999999999998899999999999999999999999999999999999642 334555554443320 0
Q ss_pred chh---H----HHHHHhccHH--HHHHHHHHHH-HhhccCCC---hHHHHHHHHHHHh--------ccCCCChHHHHHHH
Q psy16366 129 DDS---A----VNIVLSADKN--RVKLLKECSK-LERDESGD---NQLRLTEVYDELK--------SIEADAAEPRARRI 187 (568)
Q Consensus 129 ~~~---~----~~~v~~~~~~--~~~l~~~~~~-l~~~~~~~---~~~~l~~v~~el~--------~~~~~~~~~~~~~~ 187 (568)
... . +..+.+.... .....+.... ........ ...+..++.+.+. .....++++++|..
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 000 0 0000110000 0000000000 00000000 1123333444321 12346788888877
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++..-+.. |+|||. .|.++.++ +.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 240 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE-GDPEQV 240 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHH
Confidence 76543332 889992 34444333 78999999999999999999999999999864 555443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=212.19 Aligned_cols=178 Identities=21% Similarity=0.228 Sum_probs=120.0
Q ss_pred CccceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE----------------
Q psy16366 56 NSVDIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL---------------- 118 (568)
Q Consensus 56 ~~~~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i---------------- 118 (568)
.+.+|+++|++++| +++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCc
Confidence 35689999999999 88889999999999999999999999999999999999743 233333
Q ss_pred -EEEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHH
Q psy16366 119 -LYCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILA 189 (568)
Q Consensus 119 -~~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~ 189 (568)
.++.|+...... +..+.+.- .+ ........+...++.++.+.+. .....++++++|.+|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~------~l-----~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSF------GL-----REKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHH------HH-----HHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 444444322221 22111110 00 0000000001233444444432 1234688899988887
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 231 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQF-GTPE 231 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 654443 889991 45555555689999999999999999999999999999865 4443
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=201.95 Aligned_cols=178 Identities=20% Similarity=0.269 Sum_probs=116.1
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-----------------
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY----------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~----------------- 120 (568)
..|+++|++++|+++.+|+++||+|.+|++++|+||||||||||||+|+|... |..+.+.+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEE
Confidence 47899999999998899999999999999999999999999999999999643 33344443
Q ss_pred -EeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhc
Q psy16366 121 -CEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGL 191 (568)
Q Consensus 121 -~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~l 191 (568)
+.|+...... +..+.+. +. ..+..........++.++.+.+. .....+.++++|..++..
T Consensus 92 ~v~q~~~l~~~ltv~enl~--------~~---~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra 160 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLR--------FV---AGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA 160 (256)
T ss_dssp EECTTCCCCTTSBHHHHHH--------HH---HHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHH--------HH---HHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 3333222111 1111110 00 00000000000123344444432 233468888888877655
Q ss_pred CCCc----cCCCch---------HHHHHHh---ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 192 GFTT----IYIPSS---------RVHEIMR---TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 192 g~~~----L~~ePn---------~L~~~l~---~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
-+.. |+|||. .+.++++ +.+.|||+||||++++..+||+|++|++|+++.. |+.+.+
T Consensus 161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~~ 233 (256)
T 1vpl_A 161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEEL 233 (256)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHH
T ss_pred HHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEe-cCHHHH
Confidence 4333 889992 3333332 2378999999999999999999999999999864 554443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-22 Score=200.15 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=118.5
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc----eEEEEeccccCC-chhH
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI----DLLYCEQEVEAS-DDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~----~i~~~~qe~~~~-~~~~ 132 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|...|..+.+ .+.|+.|+.... ..+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 699999999998 8899999999999999999999999999999999999743322221 356777775443 2233
Q ss_pred HHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch
Q psy16366 133 VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS 201 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn 201 (568)
.+.+......... ...........++.++.+.+. .....+.++++|..++..-+.. |+|||.
T Consensus 84 ~enl~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 84 LDIVLMGRSTHIN-------TFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp HHHHHGGGGGGSC-------TTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred HHHHHHhhhhhcc-------cccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3322211000000 000000001123333444331 2334688888887776543332 889991
Q ss_pred ---------HHHHHHh----ccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 202 ---------RVHEIMR----TWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 202 ---------~L~~~l~----~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++.++++ +.+.|||+||||.+++..+||+|++|++|+ + +.|+.+.+
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-F-KFGETRNI 215 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-E-EEEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-E-ecCCHHHH
Confidence 3444443 337899999999999999999999999999 5 45655443
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=211.43 Aligned_cols=175 Identities=21% Similarity=0.217 Sum_probs=118.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-----------------EEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL-----------------LYC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i-----------------~~~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||||+|+|... |..+.+ .++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999988899999999999999999999999999999999999643 333344 344
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCC
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS-------IEADAAEPRARRILAGLGF 193 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+....+. +..+.+.- .+ ........+...++.++.+.+.. ....++++++|.+|+..-.
T Consensus 81 ~Q~~~l~~~ltv~eni~~------~~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAF------PL-----ELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp CTTCCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred ecCcccCCCCCHHHHHHH------HH-----HhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHH
Confidence 444322211 11111110 00 00000000112334444544321 2346888899888876544
Q ss_pred Cc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 219 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQV-GTPD 219 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 33 889991 45555555689999999999999999999999999999865 4433
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=211.56 Aligned_cols=172 Identities=21% Similarity=0.242 Sum_probs=117.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------EE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL-----------------YC 121 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~-----------------~~ 121 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+. |+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999998899999999999999999999999999999999999643 3334443 34
Q ss_pred eccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCC---ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHh
Q psy16366 122 EQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESG---DNQLRLTEVYDELK-------SIEADAAEPRARRILAG 190 (568)
Q Consensus 122 ~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~---~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~ 190 (568)
.|+....+. +..+.+.-. + ..... +...++.++.+.+. .....++++++|.+|+.
T Consensus 81 ~Q~~~l~~~ltv~eni~~~-------------~-~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFP-------------L-RARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGG-------------G-SSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ecCcccCCCCCHHHHHHHH-------------H-HhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 443322211 111111100 0 00000 00123444554432 12346888999888876
Q ss_pred cCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 191 LGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 191 lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 219 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY-GTPD 219 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 54443 889991 45555555689999999999999999999999999999865 4443
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-26 Score=243.47 Aligned_cols=171 Identities=16% Similarity=0.118 Sum_probs=131.4
Q ss_pred ceeeeeeeEEEeCCC--------------------EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe--eEEEEec
Q psy16366 349 KVLLEKVNFGLDMES--------------------RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL--RIGKFDQ 406 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge--------------------~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~i~~~~q 406 (568)
+.++++|||+|.+|+ ++||+||||||||||+|+|+|+++|++|+|...... +.++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999998754321 2378888
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHh--HHHHHHHHHHHcc----------CCCe
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGG--QKARVALAELTLN----------NPDI 474 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgG--qkqRv~lA~al~~----------~p~l 474 (568)
++ .++..++.+++... .....+.++|..+++..... .+ . ||+| |+||++||++|+. +|++
T Consensus 116 ~~---~~~~ltv~D~~g~~--~~~~~~~~~L~~~~L~~~~~-~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl 187 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIG--STNFPPDTYLEKMKFYEYDF-FI-I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS 187 (413)
T ss_dssp CS---SCTTEEEEECCCGG--GSSCCHHHHHHHTTGGGCSE-EE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred cc---ccCCeeehHhhccc--chHHHHHHHHHHcCCCccCC-eE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc
Confidence 74 24445554432111 12234677889999876432 23 3 9999 9999999999999 9999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc------------CceEEEEecchHH--HHhhCceEE-EEECCe
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY------------QGGVILVSHDERL--IRETDCELW-ALEKKN 527 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~------------~~tvi~vsHd~~~--i~~~~~~i~-~l~~g~ 527 (568)
|+|||||++||+.++..+.+.|+++ ..+|+++||++.. +..+|+++. .+..|.
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999999999999888887776554 1358889999887 788887774 344443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-22 Score=208.38 Aligned_cols=171 Identities=23% Similarity=0.254 Sum_probs=117.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc-------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV------------- 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~------------- 125 (568)
+|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEE
Confidence 47899999999888 9999999999999999999999999999999999743 3344444433332
Q ss_pred ----cCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 126 ----EASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 126 ----~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..... +..+.+.- .+ ... ..... .++.++.+.+. .....++++++|.+|+..-.
T Consensus 78 ~Q~~~l~~~ltv~enl~~------~~-----~~~--~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEF------GM-----RMK--KIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp CTTCCCCTTSCHHHHHHH------HH-----HHH--CCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCHHHHHHH------HH-----HHc--CCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 11111 11111100 00 000 01111 34455555442 12346888999988877655
Q ss_pred Cc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 TT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.. |+||| ++|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 213 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV-GKPE 213 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEE-ECHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHH
Confidence 44 88999 145555555689999999999999999999999999999865 4443
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-22 Score=195.82 Aligned_cols=180 Identities=19% Similarity=0.208 Sum_probs=110.2
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|++++|++ .++|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.+.++........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~ 78 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELT 78 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHH
Confidence 4789999999963 469999999999999999999999999999999999643 334444444433322111110
Q ss_pred -------HHHHhccHH--HHHHHHHHHHHhh-cc---CCCh---HHHHHHHHHHHh--------ccCCCChHHHHHHHHH
Q psy16366 134 -------NIVLSADKN--RVKLLKECSKLER-DE---SGDN---QLRLTEVYDELK--------SIEADAAEPRARRILA 189 (568)
Q Consensus 134 -------~~v~~~~~~--~~~l~~~~~~l~~-~~---~~~~---~~~l~~v~~el~--------~~~~~~~~~~~~~~L~ 189 (568)
..+++...- .....+.. .+.. .. .... ..+..++.+.+. .....++++++|..++
T Consensus 79 ~~~~~~i~~v~Q~~~l~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 79 KIRRDKIGFVFQQFNLIPLLTALENV-ELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHH-HHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHhhccEEEEecCCccCCCCcHHHHH-HHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 001110000 00000000 0000 00 0011 123333333322 1234578888888876
Q ss_pred hcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 190 GLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 190 ~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
..-+.. |+|||. +|.++.++.+.|||+||||++.+ .+||+|++|++|+++..
T Consensus 158 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~ 226 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEE
Confidence 654433 889992 34444444589999999999965 78999999999999764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=210.72 Aligned_cols=175 Identities=21% Similarity=0.194 Sum_probs=117.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-------------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL------------------- 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~------------------- 119 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhH
Confidence 5899999999998899999999999999999999999999999999999743 2333333
Q ss_pred ----EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 120 ----YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 120 ----~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
|+.|+...... +..+.+.- .+ ............++.++.+.+. .....++++++|.+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~------~~-----~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRva 149 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAF------PL-----KLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHH------HH-----HHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHH------HH-----HHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHH
Confidence 33333222111 11111110 00 0000000011234444554432 12346888888888
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+..-... |+|||. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 225 (372)
T 1g29_1 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPD 225 (372)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEe-CCHH
Confidence 76643332 889991 45555555689999999999999999999999999999865 4443
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-23 Score=205.98 Aligned_cols=186 Identities=12% Similarity=0.132 Sum_probs=117.9
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh-H----
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS-A---- 132 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~-~---- 132 (568)
.+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+.++++...... .
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHT
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCC
Confidence 36999999999998899999999999999999999999999999999999642 3455665555444221110 0
Q ss_pred HHHHHhccHHH--HHHHHHHHHHhhcc---------------CCC--hHHHHHHHHHHHh-------ccCCCChHHHHHH
Q psy16366 133 VNIVLSADKNR--VKLLKECSKLERDE---------------SGD--NQLRLTEVYDELK-------SIEADAAEPRARR 186 (568)
Q Consensus 133 ~~~v~~~~~~~--~~l~~~~~~l~~~~---------------~~~--~~~~l~~v~~el~-------~~~~~~~~~~~~~ 186 (568)
+..+.+..... ....+.. .+.... ... ...+..++.+.+. .....+.++++|.
T Consensus 84 i~~v~q~~~l~~~~tv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHH-HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHH-HHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence 00111111000 0000000 000000 001 1233444555442 1234577888887
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.++..-+.. |+|||. +|.++.+. +.|||+||||++++..+||+|++|++|+++.. |+.+.
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE-GRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEE-EESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEE-eCHHH
Confidence 776543322 889991 34444333 78999999999999999999999999999864 44443
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=211.39 Aligned_cols=185 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v 136 (568)
+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.+.++++..... ..+..+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEE
Confidence 5999999999998899999999999999999999999999999999999643 344555444443321110 001111
Q ss_pred HhccHHHHHHHHHHHHHhh-cc--CCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSADKNRVKLLKECSKLER-DE--SGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~~--~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
++.. ....-+...+.+.. +. ... ...++.++.+.+. .....++++++|.+|+..-... |+||
T Consensus 89 ~Q~~-~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 89 FQSY-AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp EC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred ecCc-ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1110 00000000001100 00 001 1234444555432 1234577788888776654433 8899
Q ss_pred ch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 200 SS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 200 Pn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|. .|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~-g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI-GSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 91 45555555689999999999999999999999999999865 4443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=210.43 Aligned_cols=175 Identities=27% Similarity=0.270 Sum_probs=117.0
Q ss_pred ceEEeeeEEEeCCce--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE-----------------
Q psy16366 59 DIKVENFSLSAKGVE--LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL----------------- 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~----------------- 119 (568)
+|+++|++++|+++. +|+|+||+|.+||+++|+||||||||||||+|+|... |..+.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChh
Confidence 589999999998888 9999999999999999999999999999999999643 2333333
Q ss_pred -----EEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHH
Q psy16366 120 -----YCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARR 186 (568)
Q Consensus 120 -----~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~ 186 (568)
++.|+...... +..+.+.-.. ............+..++.+.+. .....++++++|.
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~-----------~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPL-----------TNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGG-----------TTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 33333222111 1111111000 0000000001233444444432 1234688899988
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
+|+..-... |+|||. +|.++.++.+.|+|+||||++++..+||+|++|++|++... |+.+
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~-g~~~ 226 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQV-GKPE 226 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHH
Confidence 887654433 889991 45555555689999999999999999999999999999865 4443
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=195.25 Aligned_cols=186 Identities=19% Similarity=0.265 Sum_probs=112.4
Q ss_pred ccceEEeeeEEEe--CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHH
Q psy16366 57 SVDIKVENFSLSA--KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 134 (568)
Q Consensus 57 ~~~I~i~nls~~~--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~ 134 (568)
.-||+++|++++| +++.+|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+.++.......+.
T Consensus 5 ~~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~ 82 (247)
T 2ff7_A 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLR 82 (247)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHH
T ss_pred cCceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHH
Confidence 3589999999999 35789999999999999999999999999999999999642 3344444433333211110000
Q ss_pred ----HHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH------Hh------------ccCCCChHHHHHHHHHhcC
Q psy16366 135 ----IVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE------LK------------SIEADAAEPRARRILAGLG 192 (568)
Q Consensus 135 ----~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e------l~------------~~~~~~~~~~~~~~L~~lg 192 (568)
.+.+.. ..... ...+.+..........++.++.+. +. .....+.++++|..++..-
T Consensus 83 ~~i~~v~Q~~-~l~~~-tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 83 RQVGVVLQDN-VLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp HHEEEECSSC-CCTTS-BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred hcEEEEeCCC-ccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 000000 00000 000000000000001112222211 11 1245788899888877654
Q ss_pred CCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 193 FTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 193 ~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
+.. |+|||. .+.+++++ .+.|||+||||.+++.. ||+|++|++|+++.. |+.+.
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~-g~~~~ 229 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQ-GKHKE 229 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEETTEEEEE-ECHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHH
Confidence 433 889991 33333333 27899999999998865 999999999999864 55544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=196.92 Aligned_cols=173 Identities=23% Similarity=0.177 Sum_probs=112.9
Q ss_pred ceEEeeeEEEeC--C---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE-------------
Q psy16366 59 DIKVENFSLSAK--G---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY------------- 120 (568)
Q Consensus 59 ~I~i~nls~~~~--~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~------------- 120 (568)
+|+++|++++|+ + +++|+|+||+|.+|++++|+||||||||||+|+|+|... |..+.+.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhh
Confidence 589999999997 4 579999999999999999999999999999999999643 33344443
Q ss_pred ---Eeccc--cCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc---------cCCCChHHHHHH
Q psy16366 121 ---CEQEV--EASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS---------IEADAAEPRARR 186 (568)
Q Consensus 121 ---~~qe~--~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~---------~~~~~~~~~~~~ 186 (568)
+.|+. .....+..+.+... .... ........++.++.+.+.. ....++++++|.
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~-----------~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFA-----------VKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHT-----------TTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHH-----------HHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHH
Confidence 33321 11111111111000 0000 0111112334444444321 234678888888
Q ss_pred HHHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 187 ILAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.++..-+.. |+|||. .|.++.+. +.|||+||||++++..+||+|++|++|+++.. |+.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~ 223 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD-GTRM 223 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE-EEHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 776554433 889992 34343334 78999999999999999999999999999754 4443
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=196.29 Aligned_cols=173 Identities=17% Similarity=0.216 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeCC---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE--------------
Q psy16366 58 VDIKVENFSLSAKG---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY-------------- 120 (568)
Q Consensus 58 ~~I~i~nls~~~~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~-------------- 120 (568)
.+|+++|++++|++ +++|+++||+|.+|++++|+|||||||||||++|+|... |..+.+.+
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~ 92 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLH 92 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHh
Confidence 36999999999976 789999999999999999999999999999999999643 33344443
Q ss_pred -----EeccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCC-h-------HHHHHHHHHHH---------hccCCC
Q psy16366 121 -----CEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGD-N-------QLRLTEVYDEL---------KSIEAD 178 (568)
Q Consensus 121 -----~~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~-~-------~~~l~~v~~el---------~~~~~~ 178 (568)
+.|+......+..+.+.-.. ..... . ...+.++.+.+ +.....
T Consensus 93 ~~i~~v~Q~~~l~~~tv~enl~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 93 TQVAAVGQEPLLFGRSFRENIAYGL---------------TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHTTC---------------SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred ccEEEEecCCccccccHHHHHhhhc---------------ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 33433222222222211100 00000 0 00112222222 123456
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc----CCeEEEEeCCHHHHHhhhceeeEEcCCeeeE
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW----KKTLLVVSHDQSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~----~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~ 241 (568)
++++++|..|+..-+.. |+|||. .+.++++++ +.|||+||||.+++.. ||+|++|++|+++.
T Consensus 158 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 158 SGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVCE 236 (271)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE
Confidence 88888888876654433 889992 455555443 6799999999999875 99999999999975
Q ss_pred EcCChhHH
Q psy16366 242 YKGNFTLF 249 (568)
Q Consensus 242 ~~g~y~~~ 249 (568)
. |+.+.+
T Consensus 237 ~-g~~~~l 243 (271)
T 2ixe_A 237 Q-GTHLQL 243 (271)
T ss_dssp E-ECHHHH
T ss_pred E-CCHHHH
Confidence 4 555543
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=201.00 Aligned_cols=188 Identities=17% Similarity=0.158 Sum_probs=116.0
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc--CCchhHH--
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE--ASDDSAV-- 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~--~~~~~~~-- 133 (568)
.+|+++|++++|+++++|+|+||+|.+|+++||+||||||||||||+|+|... |..+.+.+.+.++. .......
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcC
Confidence 36999999999998899999999999999999999999999999999999642 34455555444432 1111000
Q ss_pred --HHHHhccHHHHHH-HHHHHHHhh-c-------cCCC--hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC
Q psy16366 134 --NIVLSADKNRVKL-LKECSKLER-D-------ESGD--NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 134 --~~v~~~~~~~~~l-~~~~~~l~~-~-------~~~~--~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~ 193 (568)
..+.+........ +...+.+.. . .... ...++.++.+.+. .....+.++++|..++..-+
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~ 177 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALM 177 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHh
Confidence 0000000000000 000000000 0 0001 1223344444432 12346788888877765433
Q ss_pred Cc----cCCCch---------HHHHHHhcc---CCeE--EEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 194 TT----IYIPSS---------RVHEIMRTW---KKTL--LVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~~~---~~tv--lvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.. |+|||. ++.++++++ +.|| |+||||++++..+||+|++|++|+++. .|+.+.
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~-~g~~~~ 249 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ-QGAVED 249 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE-EEEHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 32 889992 333443322 7899 999999999999999999999999985 455443
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=189.57 Aligned_cols=179 Identities=18% Similarity=0.264 Sum_probs=116.0
Q ss_pred ceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC----ceEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS----IDLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~----~~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|...|..+. ..+.|+.|+......+.
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~tv 85 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPGTI 85 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSBCH
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCCCH
Confidence 689999999995 478999999999999999999999999999999999974332222 13567888765444444
Q ss_pred HHHHHhcc-HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh---------ccCCCChHHHHHHHHHhcCCCc----cCC
Q psy16366 133 VNIVLSAD-KNRVKLLKECSKLERDESGDNQLRLTEVYDELK---------SIEADAAEPRARRILAGLGFTT----IYI 198 (568)
Q Consensus 133 ~~~v~~~~-~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~---------~~~~~~~~~~~~~~L~~lg~~~----L~~ 198 (568)
.+.+.-.. ...... .+ .+... .+.+..+.+. .....+.++++|..++..-+.. |+|
T Consensus 86 ~enl~~~~~~~~~~~-~~--~~~~~-------~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 86 KENIIFGVSYDEYRY-RS--VIKAC-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHHTTSCCCHHHH-HH--HHHHT-------TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHHhhccCCcChHHH-HH--HHHHh-------CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 44332210 000000 00 00000 0001111110 1235688888887776543332 889
Q ss_pred Cch---------HHHHH-Hhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 199 PSS---------RVHEI-MRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 199 ePn---------~L~~~-l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
||. .+.++ +..+ +.|||+||||.+++. .||+|++|++|+++.. |+++.+
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~-g~~~~~ 216 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFY-GTFSEL 216 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEE-ECHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 992 45454 3332 679999999999986 5999999999999764 555543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=196.11 Aligned_cols=168 Identities=23% Similarity=0.240 Sum_probs=115.0
Q ss_pred ceEEeeeEEEeCC----ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe------------
Q psy16366 59 DIKVENFSLSAKG----VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE------------ 122 (568)
Q Consensus 59 ~I~i~nls~~~~~----~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~------------ 122 (568)
+|+++|++++|++ +++|+++||+|. |++++|+||||||||||||+|+|.. |..+.+.+.+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~---p~~G~I~~~g~~~~~~~~~~~i 76 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL---PYSGNIFINGMEVRKIRNYIRY 76 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS---CCEEEEEETTEEGGGCSCCTTE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC---CCCcEEEECCEECcchHHhhhe
Confidence 4789999999987 789999999999 9999999999999999999999974 4445554433
Q ss_pred -----ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc--------cCCCChHHHHHHHHH
Q psy16366 123 -----QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS--------IEADAAEPRARRILA 189 (568)
Q Consensus 123 -----qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~--------~~~~~~~~~~~~~L~ 189 (568)
|+... ..+..+.+. +. ..+ . .....++.++.+.+.. ....+.++++|..++
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~--------~~---~~~---~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVY--------LY---EEL---K-GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHH--------HH---HHH---T-CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHH--------Hh---hhh---c-chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 33222 111111110 00 000 0 1112333444444321 234577888887776
Q ss_pred hcCCCc----cCCCc---------hHHHHHHhccCCeEEEEeCCHHHHHhhhc-eeeEEcCCeeeEEcCChh
Q psy16366 190 GLGFTT----IYIPS---------SRVHEIMRTWKKTLLVVSHDQSFLNNICT-DIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 190 ~lg~~~----L~~eP---------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d-~ii~L~~g~l~~~~g~y~ 247 (568)
..-... |+||| .++.++++++..|||+||||++++..+|| +|++|++|++... |+.+
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~-g~~~ 211 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGP-ISVS 211 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEE-EEHH
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEe-cCHH
Confidence 543322 88999 26777887775599999999999999999 9999999999754 4443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=192.47 Aligned_cols=171 Identities=13% Similarity=0.152 Sum_probs=110.8
Q ss_pred ceEEeeeEEEe-CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe---------------
Q psy16366 59 DIKVENFSLSA-KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE--------------- 122 (568)
Q Consensus 59 ~I~i~nls~~~-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~--------------- 122 (568)
+|+++|++++| +++++|+|+||+|.+|++++|+|||||||||||++|+|... |..+.+.+.+
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i 78 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQI 78 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhE
Confidence 47899999999 56789999999999999999999999999999999999643 3334444433
Q ss_pred ----ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh------------------ccCCCCh
Q psy16366 123 ----QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK------------------SIEADAA 180 (568)
Q Consensus 123 ----qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~------------------~~~~~~~ 180 (568)
|+......+..+.+.-. ........++.++.+.+. .....+.
T Consensus 79 ~~v~q~~~l~~~tv~enl~~~----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSg 142 (243)
T 1mv5_A 79 GFVSQDSAIMAGTIRENLTYG----------------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISG 142 (243)
T ss_dssp CEECCSSCCCCEEHHHHTTSC----------------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCH
T ss_pred EEEcCCCccccccHHHHHhhh----------------ccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCH
Confidence 32221111111111100 000011122223332221 1235688
Q ss_pred HHHHHHHHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCC
Q psy16366 181 EPRARRILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGN 245 (568)
Q Consensus 181 ~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~ 245 (568)
++++|..++..-+.. |+|||. .+.+++++ .+.|||+||||.+++. .||+|++|++|+++. .|+
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~-~g~ 220 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITG-SGK 220 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECC-CSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEE-eCC
Confidence 888887776543322 889991 33333332 2789999999999886 599999999999975 466
Q ss_pred hhHH
Q psy16366 246 FTLF 249 (568)
Q Consensus 246 y~~~ 249 (568)
.+.+
T Consensus 221 ~~~~ 224 (243)
T 1mv5_A 221 HNEL 224 (243)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=195.41 Aligned_cols=191 Identities=19% Similarity=0.250 Sum_probs=117.2
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-H-
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV-N- 134 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~-~- 134 (568)
..+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|.....|..+.+.+.++++........ .
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 44799999999998889999999999999999999999999999999999962112334455444433321111000 0
Q ss_pred ---HHHhccH-----HHHHHHHH-HHHH---hhccCCC---hHHHHHHHHHHHhc--------cC-CCChHHHHHHHHHh
Q psy16366 135 ---IVLSADK-----NRVKLLKE-CSKL---ERDESGD---NQLRLTEVYDELKS--------IE-ADAAEPRARRILAG 190 (568)
Q Consensus 135 ---~v~~~~~-----~~~~l~~~-~~~l---~~~~~~~---~~~~l~~v~~el~~--------~~-~~~~~~~~~~~L~~ 190 (568)
.+.+... .....+.. ...+ ....... ...++.++.+.+.. +. ..+.++++|..++.
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 0011000 00000000 0000 0000001 12234445544321 12 26778888877765
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChhH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~~ 248 (568)
.-+.. |+|||. ++.++++++ +.|||+||||.+++..+ ||+|++|++|+++.. |+.+.
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 251 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS-GDFTL 251 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE-ECTTH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE-cCHHH
Confidence 43322 889992 566666554 67999999999999886 999999999999864 45443
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-26 Score=234.02 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=122.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|.+. +|.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~--lf~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSH--FWL 166 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSG--GGG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCccc--ccc
Confidence 477899999994 67999999999999999999999999999999999998 8988 356677652 443
Q ss_pred CCCHHH-HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH
Q psy16366 415 DDTPCE-YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493 (568)
Q Consensus 415 ~~~~~e-~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~ 493 (568)
. ++.+ ++....... ..+.+.+..+ |+...+ ...|||||||| ||||+.+|+||| |++||+.+...+.
T Consensus 167 ~-ti~~~ni~~~~~~~-~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~ 233 (305)
T 2v9p_A 167 A-SLADTRAALVDDAT-HACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYL 233 (305)
T ss_dssp G-GGTTCSCEEEEEEC-HHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGG
T ss_pred c-cHHHHhhccCcccc-HHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHH
Confidence 2 3332 221111112 2345556654 443332 57899999999 999999999999 9999999877775
Q ss_pred HHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 494 EAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 494 ~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
. +||++..+ ..||++ +|++|+++ ..|+.+++
T Consensus 234 ~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 234 Y-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp G-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCHHHH
T ss_pred H-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCHHHH
Confidence 2 29998876 579999 99999986 56888777
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-21 Score=197.16 Aligned_cols=178 Identities=17% Similarity=0.197 Sum_probs=114.3
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
..|+++|++|+|+ ++++|+|+||+|.+|+++|||||||||||||+++|+|...| ..+.
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEETTSBCHHHHHHT
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEEcccCCHHHHhcc
Confidence 4699999999995 57899999999999999999999999999999999996432 2233
Q ss_pred EEEEeccccCCchhHHHHHHhccH--HHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHHHH
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSADK--NRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRARR 186 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~~~ 186 (568)
+.|+.|+......+..+.+.-... ....+... +. ...+.+..+.+ +.....++++++|.
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~---~~-------~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAA---AQ-------AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHH---HH-------HHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred eEEEecCCccCcccHHHHHHhhcccCCHHHHHHH---HH-------HhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 455666554433333333321100 00000000 00 00001111111 01124688888888
Q ss_pred HHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 187 ILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 187 ~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.|+..-+.. |+|||. .+.+.+.+ .+.|+|+||||++.+.. ||+|++|++|+|+.. |+++..
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~-G~~~el 275 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVER-GRHEAL 275 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEE-CCHHHH
Confidence 776653332 889992 23333332 26899999999999987 999999999999864 666544
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-23 Score=214.90 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=126.3
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~ 415 (568)
.++||++.+|++++|+||||||||||+++|+|+++|+.|+|.... +..++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 467888999999999999999999999999999999999987532 124899999763 25566
Q ss_pred CCHHHHHHHh--cCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKL--FNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~ 491 (568)
.++.+++... .+.. ..+++.+|+.+.... ++.+|| |||++|||+++.+|+ +|+|| ||+|||+...
T Consensus 170 ~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~-- 238 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ-- 238 (302)
T ss_dssp HHHHHHHHHHHHTTCS----EEEECCCCCSSCCHH-HHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--
T ss_pred HHHHHHHHHHHHcCCc----chHHhcCCCCcchhH-HHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--
Confidence 6677765421 1111 124566777654443 678899 999999999999999 99999 9999998754
Q ss_pred HHHHHHhcCceEEEEec---------chHHHHhhCceEEEEECCeE
Q psy16366 492 LAEAIKNYQGGVILVSH---------DERLIRETDCELWALEKKNI 528 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsH---------d~~~i~~~~~~i~~l~~g~i 528 (568)
+..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 239 ~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 23333356889999999 66778888889999999964
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=192.78 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=111.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCc--hhHHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD--DSAVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~--~~~~~~v 136 (568)
+|+++|++++|++ .|+|+||+|.+ +++||+||||||||||+|+|+|... |..+.+.+.++++.... ...+..+
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEE
Confidence 3789999999975 49999999999 9999999999999999999999642 34455555443331100 0001111
Q ss_pred HhccHHHHHHHHHHHHHhh-ccC-C--ChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch
Q psy16366 137 LSADKNRVKLLKECSKLER-DES-G--DNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS 201 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~~~-~--~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn 201 (568)
.+... ....+...+.+.. ... + ....+..++.+.+. .....++++++|..++..-+.. |+|||.
T Consensus 76 ~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 76 PQDYA-LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CSSCC-CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred cCCCc-cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11000 0000000000000 000 0 00122333333321 1234678888888776654433 889992
Q ss_pred -------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 202 -------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 202 -------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.|.++.++.+.|||+||||.+++..+||+|++|++|+++.. |+.+.+
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 214 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLKEL 214 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 33343334478999999999999999999999999999864 555443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=191.28 Aligned_cols=174 Identities=18% Similarity=0.226 Sum_probs=115.4
Q ss_pred ceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc----eEEEEeccccCCchhH
Q psy16366 59 DIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI----DLLYCEQEVEASDDSA 132 (568)
Q Consensus 59 ~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~----~i~~~~qe~~~~~~~~ 132 (568)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|...|..+.+ .+.|+.|+......+.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~tv 82 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDSL 82 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEEH
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcCH
Confidence 589999999997 4789999999999999999999999999999999999754322221 3567788764433333
Q ss_pred HHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHH---HHHHH------------hccCCCChHHHHHHHHHhcCCCc--
Q psy16366 133 VNIVLSADKNRVKLLKECSKLERDESGDNQLRLTE---VYDEL------------KSIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 133 ~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~---v~~el------------~~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
.+.+.-... . ......+..+ +.+.+ ......++++++|..++..-+..
T Consensus 83 ~enl~~~~~--------------~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 83 RENILFGCQ--------------L-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp HHHHHTTSC--------------C-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhhCccc--------------c-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 333321100 0 0000000000 01111 11235688888887776543322
Q ss_pred --cCCCch---------HHHHHHh---c--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 --IYIPSS---------RVHEIMR---T--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 --L~~ePn---------~L~~~l~---~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|+|||. .+.+++. . .+.|||+||||.+++. .||+|++|++|+++. .|+.+.+
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISE-MGSYQEL 215 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEE-EECHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEE-eCCHHHH
Confidence 889992 4445552 2 2689999999999885 699999999999975 4665543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-21 Score=191.62 Aligned_cols=188 Identities=16% Similarity=0.180 Sum_probs=112.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-H---
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV-N--- 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~-~--- 134 (568)
+|+++|++++|+++++|+|+||+|.+|++++|+||||||||||+|+|+|.....|..+.+.+.++++........ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 589999999999889999999999999999999999999999999999962112445566555444322111110 0
Q ss_pred -HHHhccH-----HHHHHHHHHH-HHhhccCC--ChHHHHHHHHHHHhc--------cCC-CChHHHHHHHHHhcCCCc-
Q psy16366 135 -IVLSADK-----NRVKLLKECS-KLERDESG--DNQLRLTEVYDELKS--------IEA-DAAEPRARRILAGLGFTT- 195 (568)
Q Consensus 135 -~v~~~~~-----~~~~l~~~~~-~l~~~~~~--~~~~~l~~v~~el~~--------~~~-~~~~~~~~~~L~~lg~~~- 195 (568)
.+.+... .....+.... ........ +...++.++.+.+.. +.. .+.++++|..++..-+..
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 0111100 0000000000 00000000 012233444443321 233 677888887766543222
Q ss_pred ---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhh-hceeeEEcCCeeeEEcCChh
Q psy16366 196 ---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNI-CTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 196 ---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v-~d~ii~L~~g~l~~~~g~y~ 247 (568)
|+|||. .+.+++++ .+.|||+||||.+++..+ ||+|++|++|+++.. |+.+
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~-g~~~ 229 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVAT-GGPE 229 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEE-ESHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEE-eCHH
Confidence 889992 44444443 368999999999999988 599999999999864 5544
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=196.76 Aligned_cols=78 Identities=36% Similarity=0.520 Sum_probs=67.9
Q ss_pred CCCCCCCHhHHH------HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKA------RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkq------Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++..||||||| |+++|++++.+|++|||||||+|||+.++..+.+.|.++ +.+||+||||.++ ..+|++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d~ 322 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAADH 322 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCSE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCCE
Confidence 467899999999 678888999999999999999999999999999999875 3589999999765 578999
Q ss_pred EEEEE--CCe
Q psy16366 520 LWALE--KKN 527 (568)
Q Consensus 520 i~~l~--~g~ 527 (568)
+++|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 98885 454
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-24 Score=210.42 Aligned_cols=160 Identities=13% Similarity=0.014 Sum_probs=100.2
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-------CCCeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-------SPRLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-------~~~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
.++++| .+|.+|++++|+||||||||||+|+|+|+++...+.+.. ..+..++|++|++. +|+.+++.++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~--~~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT--RFQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH--HHHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH--HHHHHHhcCC
Confidence 456777 699999999999999999999999999998633322111 01235788888753 2333222221
Q ss_pred HH---------HhcCCCHHHHHHH----------HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC
Q psy16366 422 LM---------KLFNLPYEKSRRQ----------LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 422 l~---------~~~~~~~~~~~~~----------L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~ 482 (568)
+. ..++.+...+++. ++.+|+..... .++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKK-TMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHH-HCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHH-hcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 1112233333322 23333332222 2455666 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 483 NL----DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 483 ~L----D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
++ |+..+..+.+++.++ +.|||+||||++.+..+|+++++|.
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 98 677888887777554 5699999999999999999998874
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-24 Score=221.00 Aligned_cols=173 Identities=16% Similarity=0.083 Sum_probs=128.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEE-----------------------EeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFG-----------------------LDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~-----------------------i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.|
T Consensus 43 ~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 43 QIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred eEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 578999999992 677777764 899999999999999999999999999999877
Q ss_pred EEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh--cCC----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL--FNL----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 392 ~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~--~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
. .++++++|++. +++. ++.+++... .+. ..+.+.+.|..++ .+... .++..|||||+||+++|
T Consensus 120 ~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~-~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 120 H------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDY-ACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp C------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSC-EEEEEEETTTTEEEEEE
T ss_pred C------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCccc-CCcccCChhhhhhhhhH
Confidence 4 46899999864 4555 776664321 122 2355677888887 44432 35679999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHH-hhCceEEEEECC
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR-ETDCELWALEKK 526 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~-~~~~~i~~l~~g 526 (568)
++++.+|+|||||||+..+|... ..+.++-..+|+|+||.+... ....|...+.++
T Consensus 189 ~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 189 EQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998521 123333345788889887643 233444334443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=184.53 Aligned_cols=181 Identities=18% Similarity=0.153 Sum_probs=108.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHH----
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN---- 134 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~---- 134 (568)
+|+++|++++ ++|+|+||+|.+|++++|+||||||||||||+|+|... |. +.+.+.++++.........
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEE
Confidence 6899999987 68999999999999999999999999999999999743 33 5554444333211110000
Q ss_pred HHHhccHHHHHHHHHHHHHhh-ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcC---CC--------c
Q psy16366 135 IVLSADKNRVKLLKECSKLER-DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLG---FT--------T 195 (568)
Q Consensus 135 ~v~~~~~~~~~l~~~~~~l~~-~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg---~~--------~ 195 (568)
.+.+... ...-+...+.+.. ........++.++.+.+. .....++++++|..++..- -. -
T Consensus 77 ~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~ll 155 (249)
T 2qi9_C 77 YLSQQQT-PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155 (249)
T ss_dssp EECSCCC-CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEE
T ss_pred EECCCCc-cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEE
Confidence 0000000 0000000000000 000001233444444432 1234677887776654331 11 1
Q ss_pred cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 196 IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 196 L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
|+|||. .+.++++++ +.|||+||||++++..+||++++|++|+++.. |+.+.
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~-g~~~~ 219 (249)
T 2qi9_C 156 LLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRREE 219 (249)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-EEHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHH
Confidence 789992 333433322 78999999999999999999999999999754 54443
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=187.13 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=109.6
Q ss_pred ceEEeeeEEEeCC---ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEE--------------
Q psy16366 59 DIKVENFSLSAKG---VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYC-------------- 121 (568)
Q Consensus 59 ~I~i~nls~~~~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~-------------- 121 (568)
+|+++|++++|++ +++|+|+||+|.+|++++|+||||||||||+++|+|... | .+.+.+.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHT
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhc
Confidence 6999999999976 469999999999999999999999999999999999642 2 4444443
Q ss_pred -----eccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHH------HH------------hccCCC
Q psy16366 122 -----EQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYD------EL------------KSIEAD 178 (568)
Q Consensus 122 -----~qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~------el------------~~~~~~ 178 (568)
.|+......+..+.+.-. ..... ..++.++.+ .+ +.....
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~----------------~~~~~-~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYG----------------KLDAT-DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTT----------------CTTCC-HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred cEEEEcCCCcccccCHHHHHhcc----------------CCCCC-HHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 333222111221111100 00000 111111111 11 012356
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
++++++|..++..-+.. |+|||. .+.++++++ +.|||+||||.+++. .||+|++|++|+++. .
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~-~ 234 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVE-K 234 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEE-E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEE-E
Confidence 88888887776543322 889992 333444332 689999999999986 599999999999985 4
Q ss_pred CChhHH
Q psy16366 244 GNFTLF 249 (568)
Q Consensus 244 g~y~~~ 249 (568)
|+.+..
T Consensus 235 g~~~~l 240 (260)
T 2ghi_A 235 GTHKDL 240 (260)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 665544
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6.9e-23 Score=212.31 Aligned_cols=152 Identities=17% Similarity=0.201 Sum_probs=107.2
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
++++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+.....+ .+.... .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~---------~~~~~~-------~----- 217 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI---------VFKHHK-------N----- 217 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC---------CCSSCS-------S-----
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc---------ccccch-------h-----
Confidence 3789999999999999999999999999999999999999999876532110 000000 0
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecc
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHD 509 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd 509 (568)
.+++ +.. |||+||++||+||..+|++|||||||+. +..+ +++.+..-+.|+|++||+
T Consensus 218 ---------~i~~--------~~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~ 274 (330)
T 2pt7_A 218 ---------YTQL--------FFG--GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHA 274 (330)
T ss_dssp ---------EEEE--------ECB--TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEEC
T ss_pred ---------EEEE--------EeC--CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcc
Confidence 0000 001 8999999999999999999999999982 3322 333443323479999999
Q ss_pred hHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHH
Q psy16366 510 ERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSL 546 (568)
Q Consensus 510 ~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~ 546 (568)
.+ +...|+++++|.+|......-+.+..++.+...+
T Consensus 275 ~~-~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~~~i 310 (330)
T 2pt7_A 275 GS-SEEAFIRLANMSSSNSAARNIKFESLIEGFKDLI 310 (330)
T ss_dssp SS-HHHHHHHHHHHHHTSGGGTTSCHHHHHHHHHTTC
T ss_pred cH-HHHHhhhheehhcCCcccCCCCHHHHHHHHHHhC
Confidence 99 6678899999988753211234444444443333
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-22 Score=210.74 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=125.9
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCC
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~ 415 (568)
.++||++.+|++++|+||||||||||+++|+|+++|+.|+|.... +..|+|++|++. .+++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChh
Confidence 357788899999999999999999999999999999999987532 124899999752 14555
Q ss_pred CCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHH
Q psy16366 416 DTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDA 491 (568)
Q Consensus 416 ~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~ 491 (568)
.++.+++.... +.. ..+++.+|+.+.... ++.+|| +||++|||+++.+|+ +|+|| ||+|||+.+..
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~-~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~- 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYS-LMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA- 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCSSCCHH-HHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH-
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCChhhhh-HHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH-
Confidence 66666654211 111 124566777654443 678899 999999999999999 99999 99999987652
Q ss_pred HHHHHHhcCceEEEEec---------chHHHHhhCceEEEEECCeE
Q psy16366 492 LAEAIKNYQGGVILVSH---------DERLIRETDCELWALEKKNI 528 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsH---------d~~~i~~~~~~i~~l~~g~i 528 (568)
..+-...+.|+|++|| .+..+..++..|.++..|+.
T Consensus 297 -~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 -REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 2333356889999999 56777788889999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=181.88 Aligned_cols=166 Identities=16% Similarity=0.247 Sum_probs=107.4
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce--------------EEEEe
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID--------------LLYCE 122 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~--------------i~~~~ 122 (568)
...|+++|++++|++ ++|+|+||+|.+|++++|+|||||||||||++|+|... |..+. +.|+.
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhhhhcCcEEEEe
Confidence 457999999999988 99999999999999999999999999999999999643 22333 34455
Q ss_pred ccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhc------cCCCChHHHHHHHHHhcCCCc
Q psy16366 123 QEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKS------IEADAAEPRARRILAGLGFTT 195 (568)
Q Consensus 123 qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~~------~~~~~~~~~~~~~L~~lg~~~ 195 (568)
|+...... +..+.+. +. ...... ..+ ..++.++.+.+.. ....+.++++|..++..-+..
T Consensus 85 q~~~~~~~~tv~enl~--------~~---~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLK--------AV---ASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp SSCCCCTTSBHHHHHH--------HH---HHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred CCCcCCCCCCHHHHHH--------HH---HHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC
Confidence 54332221 2221111 00 000001 111 2344445554421 223578888888877654443
Q ss_pred ----cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEEcCCee
Q psy16366 196 ----IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239 (568)
Q Consensus 196 ----L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l 239 (568)
++|||. .+.+++++ .+.|||+||||.+++..+||+|+.+ .|+|
T Consensus 152 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 889991 33333332 2689999999999999999998854 4444
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-22 Score=229.77 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=116.5
Q ss_pred CCCeEEEEe-----eEEEeCCCceeeeeeeEEEeC-------CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe
Q psy16366 332 PPPVLGLHD-----VTFGYPGGKVLLEKVNFGLDM-------ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL 399 (568)
Q Consensus 332 ~~~~l~~~~-----v~~~y~~~~~il~~vs~~i~~-------Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~ 399 (568)
..++|.+++ |++.|+++..+++|++|++.+ |++++|+||||||||||||+| |++.+. .
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 346899999 999995567899999999987 999999999999999999999 998752 2
Q ss_pred eEE-EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 400 RIG-KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 400 ~i~-~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
++| |+||++. ..++.+.+ +.++|+...... ..+++|+++++ +++|++++.+|.++|||
T Consensus 817 qiG~~Vpq~~~-----~l~v~d~I--------------~~rig~~d~~~~-~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 817 QMGCYVPAEVC-----RLTPIDRV--------------FTRLGASDRIMS-GESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTTCCEESSEE-----EECCCSBE--------------EEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred heeEEeccCcC-----CCCHHHHH--------------HHHcCCHHHHhh-chhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 345 8888752 12222211 123344333222 34678887775 99999999999999999
Q ss_pred CCCCCCCHHHH-H---HHHHHHHhc-CceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 479 EPTNNLDIESI-D---ALAEAIKNY-QGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 479 EPt~~LD~~~~-~---~l~~~l~~~-~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
|||+|+|+... . ++++.|.+. +.++|++|||.+++..++++++++ +|++.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999998763 3 334444443 779999999999999999988775 46654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-21 Score=200.48 Aligned_cols=188 Identities=14% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCccceEEeeeEEEe--CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH
Q psy16366 55 DNSVDIKVENFSLSA--KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA 132 (568)
Q Consensus 55 ~~~~~I~i~nls~~~--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~ 132 (568)
.....|+++|++++| ++..+|+|+||+|.+||+++|+||||||||||||+|+|.. +..+.|.+.++++.......
T Consensus 15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~---~~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS---EEEEEEEESSCBTTSSCHHH
T ss_pred CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC---CCCeEEEECCEECCcCChHH
Confidence 344579999999999 6678999999999999999999999999999999999963 23344444444332211110
Q ss_pred H----HHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH------hc-cCC-----------CChHHHHHHHHHh
Q psy16366 133 V----NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDEL------KS-IEA-----------DAAEPRARRILAG 190 (568)
Q Consensus 133 ~----~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el------~~-~~~-----------~~~~~~~~~~L~~ 190 (568)
. ..+++... .+.. ...+.+. ........++.++.+.+ .. ... .++++++|.+|+.
T Consensus 92 ~rr~ig~v~Q~~~-lf~~-tv~enl~-~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 92 WRKAFGVIPQKVF-IFSG-TFRKNLD-PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHHTEEEESCCCC-CCSE-EHHHHHC-TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcc-cCcc-CHHHHhh-hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 0 00111000 0000 0000000 00001112223333321 11 111 6888998888766
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.-... |+|||. .+.+.+++. +.|+|+||||.+.+. .||||++|++|+|..++.+.+.|
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~g~~~el~ 241 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVIEENKVRQYDSILELY 241 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEESSHHHHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 43332 889992 344455443 689999999998765 59999999999998764433333
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.5e-24 Score=206.87 Aligned_cols=139 Identities=12% Similarity=0.166 Sum_probs=90.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEEEecCCCCCCCCCCCH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGKFDQHSGEHLFPDDTP 418 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~l~~~~~~ 418 (568)
.-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.... +..++|++|++. +|..++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT--IFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHH--HHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHH--HHHHhhh
Confidence 4699999999999999999999999999999999998 6 8887521 234677777642 2211110
Q ss_pred H-HHH------HHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHH-----HHHHccCCCeEEEeCCCCCCCH
Q psy16366 419 C-EYL------MKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVAL-----AELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 419 ~-e~l------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~l-----A~al~~~p~lLlLDEPt~~LD~ 486 (568)
. +++ ...++.+...+.+++....+. .. ..+|||||+||++| +++++.+|++++|||||+++|.
T Consensus 86 ~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp TTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred ccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 0 000 001223345566667654321 11 14799999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16366 487 ESIDALAEAIKN 498 (568)
Q Consensus 487 ~~~~~l~~~l~~ 498 (568)
.+...+.+.|..
T Consensus 161 ~~~~~i~~~l~~ 172 (218)
T 1z6g_A 161 ENQEQIQKRMEQ 172 (218)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 887777777654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-22 Score=216.74 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=131.1
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
+++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.....
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 35688999999994356799999 999999999999999999999999999999999998875432
Q ss_pred -----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC--CCCccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 399 -----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG--LPSYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 399 -----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~--l~~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
..++|++|... .+++..++.+++... .+.....+ .....+ .+..||+|| |||+|| +.+
T Consensus 208 ~~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~~--------ae~~~~~~~~v~~~ld--~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 208 PDGRARSVVIAAPADV-SPLLRMQGAAYATRI--------AEDFRDRGQHVLLIMD--SLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHHHHTEEEEEECTTS-CHHHHHHHHHHHHHH--------HHHHHTTTCEEEEEEE--CHHHHHHHH-HHHHHH---TTC
T ss_pred ccccCceEEEEECCCC-CHHHHHHHHHHHHHH--------HHHHHhCCCCHHHHHH--hHHHHHHHH-HHHHHH---hCC
Confidence 35899998632 233344444443221 01111111 001111 356899999 999999 888
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC------c------eEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQ------G------GVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~------~------tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|++ |+|||+.+...+.+++.+.. + ||+++|||++ ..+|+++++|.+|+++.
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVL 335 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEE
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEE
Confidence 988 99999999999999997652 3 8999999998 56788888888888753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-19 Score=187.75 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=73.9
Q ss_pred CCC-CCCHhHHHHHHHHHHHc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCce
Q psy16366 450 PIR-DLSGGQKARVALAELTL---------NNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 450 ~~~-~LSgGqkqRv~lA~al~---------~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~ 519 (568)
++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++..|+|++||+ +. .|++
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~~~ 336 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GAAL 336 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TCSE
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cCCE
Confidence 556 79999999999999999 8999999999999999999999999999987899999995 33 8999
Q ss_pred EEEEECCeEEEEcCCHHH
Q psy16366 520 LWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 520 i~~l~~g~i~~~~g~~~~ 537 (568)
+++|++|++.. .|+.++
T Consensus 337 i~~l~~G~i~~-~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQAGRFTP-VADEEM 353 (359)
T ss_dssp EEEEETTEEEE-CCCTTT
T ss_pred EEEEECCEEEe-cCCHHH
Confidence 99999999974 555543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-21 Score=183.36 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=110.0
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------CCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---------PRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 432 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---------~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~ 432 (568)
|++++|+||||||||||+++|+|+++ ++| |... .+.++||++|+... .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~~---~~----------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----TR---GP----------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS----CE---EE-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc----ce---eh-----------
Confidence 78999999999999999999999998 888 6432 24568898887421 10 11
Q ss_pred HHHHHHhCCCCCc------cccCCCCCCCHhHHHHH-HHHH---HHccCCCeEEEeC--CCCCCCHHHHHHHHHHHHhcC
Q psy16366 433 SRRQLGMFGLPSY------AHTIPIRDLSGGQKARV-ALAE---LTLNNPDILILDE--PTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 433 ~~~~L~~~~l~~~------~~~~~~~~LSgGqkqRv-~lA~---al~~~p~lLlLDE--Pt~~LD~~~~~~l~~~l~~~~ 500 (568)
+..+++... ....+...+|+|||+++ +|++ |++.+|+|||||| ||+++|....+.|.+++..+.
T Consensus 61 ----l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~ 136 (189)
T 2i3b_A 61 ----LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG 136 (189)
T ss_dssp ----EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS
T ss_pred ----hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC
Confidence 111222110 11223457999999988 4444 5789999999999 999999999999999999875
Q ss_pred ceEE---EEecch--HHHHhhCceEEEEECCeEEEEc-CCHHHHHHHHHHHH
Q psy16366 501 GGVI---LVSHDE--RLIRETDCELWALEKKNIRKFN-GDFDDYREKLLTSL 546 (568)
Q Consensus 501 ~tvi---~vsHd~--~~i~~~~~~i~~l~~g~i~~~~-g~~~~~~~~~~~~~ 546 (568)
.+|| .||||. .|+.++++ +.+|++.... .+.+...+++++.+
T Consensus 137 ~~ilgti~vsh~~~~~~vd~i~~----~~~~~i~~~~~~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 137 TIILGTIPVPKGKPLALVEEIRN----RKDVKVFNVTKENRNHLLPDIVTCV 184 (189)
T ss_dssp CCEEEECCCCCSSCCTTHHHHHT----TCCSEEEECCSSSGGGHHHHHHHHH
T ss_pred cEEEEEeecCCCCchHHHHHHee----cCCcEEEEeChHhHHHHHHHHHHHH
Confidence 5553 456987 67766654 4666766543 45666666665544
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=182.68 Aligned_cols=178 Identities=19% Similarity=0.281 Sum_probs=105.3
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC----ceEEEEeccccCCchhHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS----IDLLYCEQEVEASDDSAV 133 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~----~~i~~~~qe~~~~~~~~~ 133 (568)
..|+++|+++. ++.+|+++||+|.+|++++|+||||||||||||+|+|...|..+. ..+.|+.|+......+..
T Consensus 39 ~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~ 116 (290)
T 2bbs_A 39 DSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIK 116 (290)
T ss_dssp -------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBHH
T ss_pred ceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcccHH
Confidence 36899999986 468999999999999999999999999999999999974332221 246788887654444444
Q ss_pred HHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh---------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 134 NIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK---------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 134 ~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~---------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+.+.......... .+ .+... .+.+..+.+. .....++++++|..++..-+.. |+|||
T Consensus 117 enl~~~~~~~~~~-~~--~~~~~-------~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 117 ENIIGVSYDEYRY-RS--VIKAC-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp HHHHTTCCCHHHH-HH--HHHHT-------TCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HHhhCcccchHHH-HH--HHHHh-------ChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 4433100000000 00 00000 0011111110 1245688888888776543332 88999
Q ss_pred h---------HHHHH-Hhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 201 S---------RVHEI-MRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 201 n---------~L~~~-l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. .+.++ +..+ +.|||+||||.+++. .||+|++|++|+++. .|+.+..
T Consensus 187 ts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~-~g~~~~l 245 (290)
T 2bbs_A 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYF-YGTFSEL 245 (290)
T ss_dssp TTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEE-EECHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEE-eCCHHHH
Confidence 2 44443 2222 689999999999986 599999999999975 4665544
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=194.38 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=112.5
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe-------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE------------- 122 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~------------- 122 (568)
.+|+++|++++|++ +++|+|+||+|.+||+++||||||||||||+++|+|... |..+.+.+.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEhhhCCHHHHhc
Confidence 46999999999974 689999999999999999999999999999999999643 3344444433
Q ss_pred ------ccccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHH------Hh------------ccCCC
Q psy16366 123 ------QEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDE------LK------------SIEAD 178 (568)
Q Consensus 123 ------qe~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~e------l~------------~~~~~ 178 (568)
|+....+.+..+.+.-.. ... ....++.++.+. ++ .....
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~---------------~~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAA---------------EGE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccC---------------CCC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 332221111111111000 000 011111221111 11 11346
Q ss_pred ChHHHHHHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEc
Q psy16366 179 AAEPRARRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYK 243 (568)
Q Consensus 179 ~~~~~~~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~ 243 (568)
++++++|..++..-+.. ++|||. .+.+.++++ ++|+|+||||.+.+. .||+|++|++|+++. .
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~-~ 559 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIE-R 559 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-E
Confidence 88889888877654433 889992 333444332 789999999999987 699999999999986 4
Q ss_pred CChhHH
Q psy16366 244 GNFTLF 249 (568)
Q Consensus 244 g~y~~~ 249 (568)
|+++..
T Consensus 560 g~~~~l 565 (582)
T 3b5x_A 560 GRHADL 565 (582)
T ss_pred CCHHHH
Confidence 666544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-21 Score=202.53 Aligned_cols=176 Identities=14% Similarity=0.144 Sum_probs=124.7
Q ss_pred CCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------------
Q psy16366 333 PPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-------------- 398 (568)
Q Consensus 333 ~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 398 (568)
+++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.....
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35688999999994366799999 999999999999999999999999999999999998764321
Q ss_pred ----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCe
Q psy16366 399 ----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDI 474 (568)
Q Consensus 399 ----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~l 474 (568)
..+.+++|.. ....+.+.... ..-.+.+.+...+-.-......+..||+|| |||++| +.+|++
T Consensus 122 ~~~~~~v~~~~~~~-------~~~~~r~~~~~--~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 122 STLSKCVLVVTTSD-------RPALERMKAAF--TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp HHHTTEEEEEECTT-------SCHHHHHHHHH--HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred hhhhceEEEEECCC-------CCHHHHHHHHH--HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 1244444432 11111111000 000011111111110000002467899999 899999 578887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc-----Cc-----eEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 475 LILDEPTNNLDIESIDALAEAIKNY-----QG-----GVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 475 LlLDEPt~~LD~~~~~~l~~~l~~~-----~~-----tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
|+|||+.....+.+++.+. +. ||+++|||++ ..+|+++++|.+|+++.
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEB
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEE
Confidence 9999999999999999765 23 7999999999 67899999999999863
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-22 Score=201.66 Aligned_cols=138 Identities=15% Similarity=0.185 Sum_probs=89.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCC----CHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNL----PYE 431 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~----~~~ 431 (568)
.++|+||||||||||+|+|+|+..|++|+|.... +..++|++|++. +++.+|+.+++...... ..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 3899999999999999999999999999986532 357999999863 56666666643211111 112
Q ss_pred HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchH
Q psy16366 432 KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 432 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~ 511 (568)
.+...+. ..... ..+.+|||||+|||++||+++. +++|||||.+||+...+ +++.|.+. .+||+|.|..+
T Consensus 82 ~i~~~~~----~~~~~-~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 82 PIEKYIN----EQYEK-FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHH----HHHHH-HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEETTGG
T ss_pred HHHHHHH----HHHHh-hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEeccc
Confidence 2333322 11222 3567899999999999999886 99999999999998754 45555555 78888888775
Q ss_pred HH
Q psy16366 512 LI 513 (568)
Q Consensus 512 ~i 513 (568)
.+
T Consensus 152 ~l 153 (270)
T 3sop_A 152 TM 153 (270)
T ss_dssp GS
T ss_pred cC
Confidence 43
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=185.92 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=105.6
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-CCCeeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 347 GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-SPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
+++++|+|+||++.+|+++||+||||||||||+++|+|++ |.+.+ ..+..++|++|+. ++...+..++....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 5667999999999999999999999999999999999976 33321 1234689999984 55667877765322
Q ss_pred c---CC------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy16366 426 F---NL------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496 (568)
Q Consensus 426 ~---~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 496 (568)
. .. ..+.+.+.|+.+ ..... .++..||+||+||+++ ++++.+|+++|||||+...|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~-~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~----l~~-- 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNI--VEGKT-VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE----IRD-- 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHH--HTTCC-EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH----HHT--
T ss_pred ccCCCCCCcccccHHHHHHHHHHH--HCCCC-eecccccccccCccCc-eEEecCCCEEEEeCccccccHH----HHH--
Confidence 1 11 223345555543 22222 3568999999999988 5888899999999999888864 111
Q ss_pred HhcCceEEEEecc-hHHHHhhCceEEEEECCeEEEEcCCHHHHHHHH
Q psy16366 497 KNYQGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDYREKL 542 (568)
Q Consensus 497 ~~~~~tvi~vsHd-~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~ 542 (568)
-.+.+|+++||+ .++...++.++ ++|. ++++..+..
T Consensus 153 -~~~~~i~v~th~~~~~~r~~~r~~---~~G~------~~e~~~~~~ 189 (245)
T 2jeo_A 153 -MFHLRLFVDTDSDVRLSRRVLRDV---RRGR------DLEQILTQY 189 (245)
T ss_dssp -TCSEEEEEECCHHHHHHHHHHHHT---C---------CHHHHHHHH
T ss_pred -hcCeEEEEECCHHHHHHHHHHHHH---HcCC------CHHHHHHHH
Confidence 136799999997 55555555444 4453 455555443
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-20 Score=208.41 Aligned_cols=145 Identities=21% Similarity=0.219 Sum_probs=109.6
Q ss_pred CeEEEEeeEEEe-C-CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCC
Q psy16366 334 PVLGLHDVTFGY-P-GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGE 410 (568)
Q Consensus 334 ~~l~~~~v~~~y-~-~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~ 410 (568)
+.+.+++...-+ . +++.+++|+||+ |++++|+||||||||||||+|+|+.. |..|.+....+..+++++|
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---- 621 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---- 621 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE----
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH----
Confidence 346676663211 0 235789999999 99999999999999999999999874 6788754333445665544
Q ss_pred CCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCC---CCCCC
Q psy16366 411 HLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEP---TNNLD 485 (568)
Q Consensus 411 ~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEP---t~~LD 485 (568)
++...++.+++ ...+|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 622 -i~~~~~~~d~l----------------------------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 622 -IYTRIGASDDL----------------------------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp -EEEECCC----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred -hhccCCHHHHH----------------------------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 22222222211 124799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHHhcCceEEEEecchHHHH
Q psy16366 486 IESI-DALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 486 ~~~~-~~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
..+. .++.+.|.+.+.++|++|||.+++.
T Consensus 673 ~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 673 GVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9886 5788888887889999999998874
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=206.75 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=107.5
Q ss_pred CeEEEEeeEEEeC----CCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHH--------hcCcCCCccEEEECCCeeE
Q psy16366 334 PVLGLHDVTFGYP----GGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLL--------KGELTPNKGELRKSPRLRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~----~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~i 401 (568)
+.+.+.+...-+- +++.+++|++|++.+|++++|+||||||||||||+| +|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 3455555433221 245789999999999999999999999999999999 67666644321 1
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeC
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDE 479 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDE 479 (568)
+.+. +++.++|+... ....+|+|+++++.+|+++ +.+|+++||||
T Consensus 703 ~~~d-----------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE 749 (934)
T 3thx_A 703 SIVD-----------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSLIIIDE 749 (934)
T ss_dssp ECCS-----------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred hHHH-----------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC
Confidence 2110 11222333221 2346888888888888888 99999999999
Q ss_pred CCCCCCHHHHHHH----HHHHHh-cCceEEEEecchHHHHhhCceEEEEECCeEE
Q psy16366 480 PTNNLDIESIDAL----AEAIKN-YQGGVILVSHDERLIRETDCELWALEKKNIR 529 (568)
Q Consensus 480 Pt~~LD~~~~~~l----~~~l~~-~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~ 529 (568)
||+|||+.....+ .+.+.+ .+.++|++|||.++. .+|+++..|.+|++.
T Consensus 750 p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 750 LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEE
Confidence 9999999876555 344443 478999999998876 578888777777764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=194.16 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=114.7
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc-------------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI------------------- 116 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~------------------- 116 (568)
..|+++|++|+|++ +++|+|+||+|++||++|||||||||||||+++|+|...| ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHHHhh
Confidence 46999999999964 5799999999999999999999999999999999997433 222
Q ss_pred eEEEEeccccCCchhHHHHHHhcc--HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH-----hccCCCChHHHHHHHHH
Q psy16366 117 DLLYCEQEVEASDDSAVNIVLSAD--KNRVKLLKECSKLERDESGDNQLRLTEVYDEL-----KSIEADAAEPRARRILA 189 (568)
Q Consensus 117 ~i~~~~qe~~~~~~~~~~~v~~~~--~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el-----~~~~~~~~~~~~~~~L~ 189 (568)
.+.++.|+....+.+..+.+.-.. .....+.+..... .. .+.+..+.+.+ +.....++++++|..++
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMA-NA-----HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHT-TC-----HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHh-Cc-----HHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 255666665544444433332110 0000010000000 00 00000000000 01124688898888776
Q ss_pred hcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 190 GLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 190 ~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..-+.. ++|||. .+.+.++. .++|+|+||||.+.+.. ||+|++|++|+++. .|+++..
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~el 562 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHREL 562 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHH
Confidence 543322 889992 33333332 26899999999999865 99999999999986 4666544
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.5e-19 Score=197.19 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=114.4
Q ss_pred cceEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 58 VDIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 58 ~~I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
..|+++|++|+|++ +++|+|+||+|++|+++|||||||||||||+++|+|...| ..+.
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEEhhhCCHHHHHhc
Confidence 46999999999964 6799999999999999999999999999999999996432 2333
Q ss_pred EEEEeccccCCchhHHHHHHhccH--HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-----ccCCCChHHHHHHHHHh
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSADK--NRVKLLKECSKLERDESGDNQLRLTEVYDELK-----SIEADAAEPRARRILAG 190 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-----~~~~~~~~~~~~~~L~~ 190 (568)
+.++.|+....+.+..+.+.-... ....+.+. + ........+..+.+.++ .....++++++|..++.
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEA---A---KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHH---T---TTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHH---H---HHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 455566554433333333321100 00000000 0 00000000000000000 01235888888888766
Q ss_pred cCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
.-+.. ++|||. .+.+.+.+ .++|+|+||||.+.+.. ||+|++|++|+++. .|+++...
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~-~g~~~~l~ 577 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVE-MGKHDELI 577 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEE-CSCHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE-ECCHHHHH
Confidence 43332 889992 23333322 27899999999999976 99999999999986 57766543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=193.33 Aligned_cols=179 Identities=13% Similarity=0.129 Sum_probs=114.2
Q ss_pred cceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce------------------
Q psy16366 58 VDIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------ 117 (568)
Q Consensus 58 ~~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------ 117 (568)
..|+++|++|+|+ ++++|+|+||+|++||+++||||||||||||+++|+|... |..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHHHHHh
Confidence 4699999999994 4689999999999999999999999999999999999643 22333
Q ss_pred -EEEEeccccCCchhHHHHHHhcc--HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHHH
Q psy16366 118 -LLYCEQEVEASDDSAVNIVLSAD--KNRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRAR 185 (568)
Q Consensus 118 -i~~~~qe~~~~~~~~~~~v~~~~--~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~~ 185 (568)
+.++.|+....+.+..+.+.-.. .......+.... . .+.+..+.+ +.....++++++|
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~-~---------~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQr 487 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKI-A---------QIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHH-T---------TCHHHHHTSSSGGGCEECSSSCSSCHHHHHH
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHH-h---------CcHHHHHhcccchhhHhcCCCCCcCHHHHHH
Confidence 44555554443333333322110 000000000000 0 000011111 1112468889988
Q ss_pred HHHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 186 RILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 186 ~~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
..++..-+.. ++|||. .+.+.+++ .++|+|+||||++.+. .||+|++|++|+++. .|+++...
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~-~g~~~el~ 565 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAG-FGTHKELL 565 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEE-EECHHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 8877653332 889992 33333332 3689999999999986 799999999999986 46666543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.9e-20 Score=186.66 Aligned_cols=168 Identities=15% Similarity=0.137 Sum_probs=105.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-EEEEC-CC-------eeEEEEecCCCCCCCCCCCHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-ELRKS-PR-------LRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~-------~~i~~~~q~~~~~l~~~~~~~e 420 (568)
++|+++++.|.+|++++|+||||||||||++.|+|.+.|..| .|.+. .. .++..+.+... ....+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~------~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR------LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC------GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC------hhhcc
Confidence 579999999999999999999999999999999999999877 44321 00 00111111100 00000
Q ss_pred HHHHhcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhH-HHHHHHHHHHccCCCeEEEeCCCC---C---CCH-HH
Q psy16366 421 YLMKLFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQ-KARVALAELTLNNPDILILDEPTN---N---LDI-ES 488 (568)
Q Consensus 421 ~l~~~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGq-kqRv~lA~al~~~p~lLlLDEPt~---~---LD~-~~ 488 (568)
.+... ..... .+..++...++. ... .+..+|.+| +||+. |+++..+|++||+||||+ + +|. ..
T Consensus 97 ~l~~~-~~~~~~~~~~~~~~l~~~~l~--i~~-~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQWFDELFGNDTFH--LYD-SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH-HHHHTHHHHHHHHHHSSSCEE--EEC-CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred ccccC-CCCHHHHHHHHHHHhccCCEE--EEC-CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 11000 00011 122233322331 222 236789999 56666 999999999999999999 5 455 55
Q ss_pred HHHHHHHHH----hcCceEEEEecch--H--------------------HHHhhCceEEEEECCeE
Q psy16366 489 IDALAEAIK----NYQGGVILVSHDE--R--------------------LIRETDCELWALEKKNI 528 (568)
Q Consensus 489 ~~~l~~~l~----~~~~tvi~vsHd~--~--------------------~i~~~~~~i~~l~~g~i 528 (568)
+..+.+.|+ +++.|||++||+. + .+..+||++++|.+|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 566666664 4578999999995 4 78889999999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=193.75 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=113.3
Q ss_pred cceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce------------------
Q psy16366 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------ 117 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------ 117 (568)
..|+++|++++|++ +++|+|+||+|.+||++|||||||||||||+++|+|... |..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHh
Confidence 46999999999974 689999999999999999999999999999999999643 22233
Q ss_pred -EEEEeccccCCchhHHHHHHhcc---HHHHHHHHHHHHHhhccCCChHHHHHHHHHHH---------hccCCCChHHHH
Q psy16366 118 -LLYCEQEVEASDDSAVNIVLSAD---KNRVKLLKECSKLERDESGDNQLRLTEVYDEL---------KSIEADAAEPRA 184 (568)
Q Consensus 118 -i~~~~qe~~~~~~~~~~~v~~~~---~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el---------~~~~~~~~~~~~ 184 (568)
+.++.|+....+.+..+.+.-.. .....+.+ .+. .. .+.+..+.+ +.....++++++
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~---~l~---~~----~l~~~~~~~p~g~~~~~~~~~~~LSgGq~q 487 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEE---AAR---MA----YAMDFINKMDNGLDTIIGENGVLLSGGQRQ 487 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHH---HHH---TT----TCHHHHHHSTTGGGSBCCTTSCSSCHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHH---HHH---Hc----CCHHHHHhccccccccccCCCCCCCHHHHH
Confidence 44555554433333333222110 00000000 000 00 001111111 012346888888
Q ss_pred HHHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 185 RRILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 185 ~~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|..++..-+.. ++|||. .+.+.++++ ++|+|+||||.+.+. .||+|++|++|+++.. |+++..
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~-g~~~~l 565 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER-GTHSEL 565 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEe-cCHHHH
Confidence 88776543332 889992 333333322 789999999999886 5999999999999864 665544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-20 Score=185.92 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECCCeeEEEEecCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSPRLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~~~~q~~~~~l~~ 414 (568)
+.++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|..... .++|++|+.. .+.
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~-~~v- 75 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKK-SIV- 75 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSS-SEE-
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcc-eee-
Confidence 345555532 5899999 8999999999999999999999999999998 899865422 1333333221 000
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy16366 415 DDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494 (568)
Q Consensus 415 ~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~ 494 (568)
.. ..+|+.. ..| |++||++|..+|++||||||| |+++...+.+
T Consensus 76 -----------~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~ 118 (261)
T 2eyu_A 76 -----------NQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALR 118 (261)
T ss_dssp -----------EE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH
T ss_pred -----------eH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH
Confidence 00 1233321 122 899999999999999999999 9998877666
Q ss_pred HHHhcCceEEEEecchHHHHhhCceE
Q psy16366 495 AIKNYQGGVILVSHDERLIRETDCEL 520 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~~i~~~~~~i 520 (568)
.. ..+.+|+++||+.+. ..+|+++
T Consensus 119 ~~-~~g~~vl~t~H~~~~-~~~~dri 142 (261)
T 2eyu_A 119 AA-ETGHLVFGTLHTNTA-IDTIHRI 142 (261)
T ss_dssp HH-HTTCEEEEEECCSSH-HHHHHHH
T ss_pred HH-ccCCEEEEEeCcchH-HHHHHHH
Confidence 54 347799999999874 3445543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-21 Score=215.62 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=108.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeE-EEeCCCEEEEECCCCChHHHHHHH--HhcCcCCCccEEEECCC----------eeEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNL--LKGELTPNKGELRKSPR----------LRIG 402 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~--l~G~~~p~~G~i~~~~~----------~~i~ 402 (568)
++.+++.. |+++.++|++|+| +|++|++++|+||||||||||+++ ++|+++|++|.|++... ..+|
T Consensus 13 ~~~~~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 13 SEHQAIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp -CCSSCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred cccccccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 33444543 4467789999999 999999999999999999999999 78999999998876431 1234
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCC-ccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEeCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVALAELT-LNNPDILILDEP 480 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLDEP 480 (568)
|++|++... . + +..+.... .....-...+.-++ ..-.++..| -.+|++++||||
T Consensus 92 ~~~q~~~~~--~--~-------------------l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g~~~~lilDe~ 147 (525)
T 1tf7_A 92 WDLAKLVDE--G--K-------------------LFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKYRARRVSIDSV 147 (525)
T ss_dssp CCHHHHHHT--T--S-------------------EEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHHTCSEEEEECS
T ss_pred CChHHhhcc--C--c-------------------EEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHcCCCEEEECCH
Confidence 444432110 0 0 00000000 00000112222222 233334444 257999999999
Q ss_pred CCC-----CCHHHHHHHHHHHHh---cCceEEEEecchHHH---------HhhCceEEEEEC
Q psy16366 481 TNN-----LDIESIDALAEAIKN---YQGGVILVSHDERLI---------RETDCELWALEK 525 (568)
Q Consensus 481 t~~-----LD~~~~~~l~~~l~~---~~~tvi~vsHd~~~i---------~~~~~~i~~l~~ 525 (568)
|+. ||+..+..+.++++. .+.|||+|||+++.+ ..+||++++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 984 688888887777754 478999999999884 566999999998
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=157.70 Aligned_cols=78 Identities=36% Similarity=0.509 Sum_probs=69.6
Q ss_pred CCCCCCCHhHHHHHHHH------HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARVALA------ELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA------~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~ 519 (568)
+++.+|||||||||+|| |+|+.+|++|||||||+|||+.+...+.+.|.++ +.|||+||||.+ +..+|++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ 131 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADH 131 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCE
Confidence 47899999999999876 8999999999999999999999999999999876 469999999995 5679999
Q ss_pred EEEE--ECCe
Q psy16366 520 LWAL--EKKN 527 (568)
Q Consensus 520 i~~l--~~g~ 527 (568)
+++| .+|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4554
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-19 Score=206.74 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=92.1
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~ 426 (568)
++.+++||||++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d--------------------- 717 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD--------------------- 717 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS---------------------
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH---------------------
Confidence 46789999999999999999999999999999999754211 11110000011122110
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-HHHH----hcCc
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIK----NYQG 501 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~----~~~~ 501 (568)
+++..+|+...... ..+++|+|+++++.++++ +.+|+||||||||+|||+.....+. ..+. +.+.
T Consensus 718 --------~i~~~ig~~d~l~~-~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~ 787 (918)
T 3thx_B 718 --------GIFTRMGAADNIYK-GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKS 787 (918)
T ss_dssp --------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------HHHHhCChHHHHHH-hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 01222333332322 457899999999999999 8999999999999999998776665 3332 2478
Q ss_pred eEEEEecchHHHH
Q psy16366 502 GVILVSHDERLIR 514 (568)
Q Consensus 502 tvi~vsHd~~~i~ 514 (568)
+||+||||.+++.
T Consensus 788 tvl~vTH~~el~~ 800 (918)
T 3thx_B 788 LTLFVTHYPPVCE 800 (918)
T ss_dssp EEEEECSCGGGGG
T ss_pred eEEEEeCcHHHHH
Confidence 9999999998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-18 Score=193.25 Aligned_cols=105 Identities=29% Similarity=0.405 Sum_probs=91.7
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEec
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSH 508 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsH 508 (568)
.+.|..+||......+++.+|||||+|||+|||+|+++|+ +|||||||+|||+.....|.+.|+++ +.|||+|||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtH 524 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 4568889998654456889999999999999999999887 99999999999999999999999876 569999999
Q ss_pred chHHHHhhCceEEEE------ECCeEEEEcCCHHHHHH
Q psy16366 509 DERLIRETDCELWAL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 509 d~~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~~ 540 (568)
|++++.. ||++++| .+|+++ +.|+++++.+
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~ 560 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLK 560 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHH
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEEE-Eeechhhhhc
Confidence 9999875 9999999 777775 6789888754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=161.88 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=87.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.|++|++++|+||||||||||+++|+|.+.|..|.... ...+-|+.... .+.. ....++....+...+ .++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~--~~~~i~~~~~~---~~~~-~~i~~~~~~~~~~~~---~~~ 91 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL--NGSVIWIDTEN---TFRP-ERIREIAQNRGLDPD---EVL 91 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC--SCEEEEEESSS---CCCH-HHHHHHHHHTTSCHH---HHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCC--CCEEEEEECCC---CCCH-HHHHHHHHHcCCCHH---HHh
Confidence 68999999999999999999999999965553332111 11223333221 1110 011122222333333 222
Q ss_pred HhCCCCCccccCCCCCCCHhHH-HHHHHHHHHcc-------CCCeEEEeCCCCCCCHH----------------HHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQK-ARVALAELTLN-------NPDILILDEPTNNLDIE----------------SIDALA 493 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqk-qRv~lA~al~~-------~p~lLlLDEPt~~LD~~----------------~~~~l~ 493 (568)
+.+.+ ...++++++ +.+..+..++. +|++|+|||||+++|+. ....|.
T Consensus 92 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~ 163 (231)
T 4a74_A 92 KHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 163 (231)
T ss_dssp HTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHH
Confidence 22211 123445443 33555555544 99999999999999983 122333
Q ss_pred HHHHhcCceEEEEec----chHHHHhhCceEEEEECC
Q psy16366 494 EAIKNYQGGVILVSH----DERLIRETDCELWALEKK 526 (568)
Q Consensus 494 ~~l~~~~~tvi~vsH----d~~~i~~~~~~i~~l~~g 526 (568)
+..++.+.|||+||| +-..+..+|+.+++|++|
T Consensus 164 ~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 164 RLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 333456889999999 555599999999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.1e-20 Score=176.84 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=108.6
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC----CCHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN----LPYEKSR 434 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~----~~~~~~~ 434 (568)
..+|++++|+||||||||||+++|+|++.| .++|++|++...-....++.+.....++ ...+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999999876 4789999874221245566665432222 2345677
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHH----HHHHHHHHHccCCCeEEEeCCCCC-------CCHHHHHHHHHHHHhc----
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQK----ARVALAELTLNNPDILILDEPTNN-------LDIESIDALAEAIKNY---- 499 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqk----qRv~lA~al~~~p~lLlLDEPt~~-------LD~~~~~~l~~~l~~~---- 499 (568)
+.+..+++...... |+..+|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+.
T Consensus 72 ~~l~~~~~~~~~~~-~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~ 150 (211)
T 3asz_A 72 EHAQALLRGLPVEM-PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLER 150 (211)
T ss_dssp HHHHHHHTTCCEEE-CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcCC-CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 78888888766654 7889999964 788999999999999999999999 8988877777776543
Q ss_pred CceEEEEecch
Q psy16366 500 QGGVILVSHDE 510 (568)
Q Consensus 500 ~~tvi~vsHd~ 510 (568)
+.|+++++|+.
T Consensus 151 g~t~~~~~~~~ 161 (211)
T 3asz_A 151 GRSLEGVVAQY 161 (211)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999985
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=160.52 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=105.0
Q ss_pred CceeeeeeeE-EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH--
Q psy16366 348 GKVLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK-- 424 (568)
Q Consensus 348 ~~~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~-- 424 (568)
+.+.|+++.+ .|.+|++++|+||||||||||++.|++...+..|.+. |+..+. +..+....
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~--------~~~~~~--------~~~~~~~~~~ 71 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCI--------YVTTEE--------SRDSIIRQAK 71 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEE--------EEESSS--------CHHHHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE--------EEEccc--------CHHHHHHHHH
Confidence 3456888887 8999999999999999999999999998877666543 332211 11111110
Q ss_pred hcCCCHHHHHH-HHHhCC-CCCcc-ccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCC--CHHHHHHHHHHHH
Q psy16366 425 LFNLPYEKSRR-QLGMFG-LPSYA-HTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNL--DIESIDALAEAIK 497 (568)
Q Consensus 425 ~~~~~~~~~~~-~L~~~~-l~~~~-~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~L--D~~~~~~l~~~l~ 497 (568)
..+...+.... .+..+. +.... ........|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLK 151 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH
T ss_pred HhcchHHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH
Confidence 11111100000 000000 00000 000113459999999888888888999 99999999888 9877777766664
Q ss_pred ----hcCceEEEEecch--------HHHHhhCceEEEEECC
Q psy16366 498 ----NYQGGVILVSHDE--------RLIRETDCELWALEKK 526 (568)
Q Consensus 498 ----~~~~tvi~vsHd~--------~~i~~~~~~i~~l~~g 526 (568)
+.+.|||++||+. ..+..+||++++|...
T Consensus 152 ~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 152 RVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 4577999999999 5588999999999753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=187.32 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=87.9
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.|..+||......+++.+|||||+|||+||++|.++| .||||||||+|||+...+.|.+.|++ .+.|||+||||+
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 4788999865345688999999999999999999985 99999999999999999999888765 467999999999
Q ss_pred HHHHhhCceEEEE------ECCeEEEEcCCHHHHH
Q psy16366 511 RLIRETDCELWAL------EKKNIRKFNGDFDDYR 539 (568)
Q Consensus 511 ~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~ 539 (568)
+++. .||+|++| .+|+++ +.|+++++.
T Consensus 567 ~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~ 599 (972)
T 2r6f_A 567 DTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVM 599 (972)
T ss_dssp HHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTT
T ss_pred HHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHH
Confidence 9986 69999999 677876 677777664
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-19 Score=185.16 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC-cCCCccEEEEC--------CCeeEEEEecCCC
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE-LTPNKGELRKS--------PRLRIGKFDQHSG 409 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~-~~p~~G~i~~~--------~~~~i~~~~q~~~ 409 (568)
.||++.| +++.++++++|+| +|+||||||||||+++|+|. +.|++| +... ....+++++|...
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 4788999 6788999999998 99999999999999999998 888888 4321 1234677777542
Q ss_pred CCCCCCCCHHHHHHHhcCC-CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC-CCHH
Q psy16366 410 EHLFPDDTPCEYLMKLFNL-PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN-LDIE 487 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~-LD~~ 487 (568)
++..+++++........ ..+..+.++.. +.... ..++.++|||||||+.+||+++ +|++||||++ ||+.
T Consensus 74 --~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 --VKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred --cccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 23333333321110000 00000111110 00111 1356789999999999999886 9999999985 9998
Q ss_pred HHHHHHHHHHh-cCceEEEEecchH
Q psy16366 488 SIDALAEAIKN-YQGGVILVSHDER 511 (568)
Q Consensus 488 ~~~~l~~~l~~-~~~tvi~vsHd~~ 511 (568)
..+ ++..+.. .+.++|+++||+.
T Consensus 145 ~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 DVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred HHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 753 3333333 3568899999973
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=183.01 Aligned_cols=103 Identities=26% Similarity=0.328 Sum_probs=88.2
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.|..+||......+++.+|||||+|||+||++|+.+| .||||||||+|||+..++.|.++|+. .+.|||+||||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5888999865344688999999999999999999999 49999999999999999998887754 478999999999
Q ss_pred HHHHhhCceEEEE------ECCeEEEEcCCHHHHHH
Q psy16366 511 RLIRETDCELWAL------EKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 511 ~~i~~~~~~i~~l------~~g~i~~~~g~~~~~~~ 540 (568)
+++. .||+|++| .+|+++ +.|+++++.+
T Consensus 442 ~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKH 475 (842)
T ss_dssp HHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGG
T ss_pred HHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHh
Confidence 9875 69999999 677775 6788877643
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-17 Score=189.48 Aligned_cols=146 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhc
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLF 426 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~ 426 (568)
++.+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........+++++| ++...+..+.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~-----i~~~~~~~d~l---- 663 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR-----IFTRVGAADDL---- 663 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE-----EEEEEC---------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH-----HHhhCCHHHHH----
Confidence 45789999999 9999999999999999999999999743 2334211111223444333 22222222211
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH----HHHHHHHHh-cCc
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI----DALAEAIKN-YQG 501 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~----~~l~~~l~~-~~~ 501 (568)
. ...+.+|+++++ ++.+...+.+|+++||||||+|+|+... ..+.+.+.+ .+.
T Consensus 664 --------------------~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 664 --------------------A-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred --------------------H-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 1 123457777765 4444556899999999999888887443 344555555 478
Q ss_pred eEEEEecchHHHHhhCceEEEEECC
Q psy16366 502 GVILVSHDERLIRETDCELWALEKK 526 (568)
Q Consensus 502 tvi~vsHd~~~i~~~~~~i~~l~~g 526 (568)
++|++|||.+++. +|+++..+.++
T Consensus 722 ~vl~~TH~~el~~-l~d~~~~v~n~ 745 (800)
T 1wb9_A 722 LTLFATHYFELTQ-LPEKMEGVANV 745 (800)
T ss_dssp EEEEECSCGGGGG-HHHHSTTEEEE
T ss_pred eEEEEeCCHHHHH-HhhhhhceEEE
Confidence 9999999998764 66654333333
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-17 Score=173.79 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=92.5
Q ss_pred EeeEEEeCC-CceeeeeeeE-------EEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECCCeeEEEEecCCC
Q psy16366 339 HDVTFGYPG-GKVLLEKVNF-------GLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSPRLRIGKFDQHSG 409 (568)
Q Consensus 339 ~~v~~~y~~-~~~il~~vs~-------~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~i~~~~q~~~ 409 (568)
..++++|.. ..+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|.. + .++.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t--------~-ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT--------I-EDPI 162 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE--------E-ESSC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE--------c-cCcH
Confidence 345555522 2344555555 67889999999999999999999999999987 455531 1 1111
Q ss_pred CCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHH
Q psy16366 410 EHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489 (568)
Q Consensus 410 ~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~ 489 (568)
........ . . +.. .. .....+|..+ +||++|.++|++||+|||| |.++.
T Consensus 163 e~~~~~~~--~----~----------------v~q-~~-~~~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~ 211 (356)
T 3jvv_A 163 EFVHESKK--C----L----------------VNQ-RE-VHRDTLGFSE----ALRSALREDPDIILVGEMR---DLETI 211 (356)
T ss_dssp CSCCCCSS--S----E----------------EEE-EE-BTTTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred Hhhhhccc--c----c----------------eee-ee-eccccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHH
Confidence 11000000 0 0 000 00 0011233333 9999999999999999999 88887
Q ss_pred HHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 490 DALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
..+.++.. .+.+||+++|+.+.+ .+++|++.|
T Consensus 212 ~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l 243 (356)
T 3jvv_A 212 RLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDV 243 (356)
T ss_dssp HHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHT
T ss_pred HHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhh
Confidence 77777654 378999999999887 456666544
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-19 Score=170.47 Aligned_cols=160 Identities=17% Similarity=0.177 Sum_probs=96.7
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----CCCccEEEECCCe----eEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----TPNKGELRKSPRL----RIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~~----~i~~~~ 405 (568)
+|+++|++|.| + .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...... .+.++.
T Consensus 3 ~l~~~~~~~~~-~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVM-S-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEE-E-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhhee-e-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 57899999999 3 467877 889999999999999999999999999998 7888875421100 111111
Q ss_pred cCCCCCC--CCCCC-------HHHHHHH--hc-----------CCCH--HHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 406 QHSGEHL--FPDDT-------PCEYLMK--LF-----------NLPY--EKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 406 q~~~~~l--~~~~~-------~~e~l~~--~~-----------~~~~--~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
-+.... .+... ...++.. .. .... ..+..++..++++...-..++..+|+||+||
T Consensus 79 -t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 79 -LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp -CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred -CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 111000 00000 0111110 00 1122 2355567777876543223578899999999
Q ss_pred -HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 462 -VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 462 -v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
+..+++++.+|.++++|||||++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999888764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.5e-16 Score=157.15 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=95.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC----CCeeEEEEecCCCCCCCCCCCHHHHHHH-hcCCCHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS----PRLRIGKFDQHSGEHLFPDDTPCEYLMK-LFNLPYEK 432 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~----~~~~i~~~~q~~~~~l~~~~~~~e~l~~-~~~~~~~~ 432 (568)
.|.+|++++|+||||||||||++.|++.+. .|.+... ....+.|+..+.. . ......+.. ........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhh
Confidence 478999999999999999999999998664 3433211 1234666654321 0 011112211 12344455
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC--CCCHHH---HHHHHHHH----HhcCceE
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN--NLDIES---IDALAEAI----KNYQGGV 503 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~--~LD~~~---~~~l~~~l----~~~~~tv 503 (568)
...+++.+++..... .++..||+||.+++ ++++.+|++||+||||+ ++|... ...+...| ++.+.||
T Consensus 99 ~~~~~~~l~l~~~~~-~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQPLIG-SLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECCCTT-SCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEeecCC-CCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 566778888776544 46889999997765 57788999999999999 999733 34555544 3457899
Q ss_pred EEEecchHHHH
Q psy16366 504 ILVSHDERLIR 514 (568)
Q Consensus 504 i~vsHd~~~i~ 514 (568)
|+|||+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987763
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=141.15 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=77.3
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWA 522 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~ 522 (568)
+++..||||||||++||++|+ .+|+++||||||++||+.+...+.+.|.++ +.++|+|||+...+ ..|++++.
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~~ 138 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKIIG 138 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEEE
Confidence 357899999999999999997 457999999999999999999999999876 35899999998765 67999985
Q ss_pred E--ECCeEEEEcCCHHHHHHH
Q psy16366 523 L--EKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 523 l--~~g~i~~~~g~~~~~~~~ 541 (568)
+ .+|....+..+.+++.+.
T Consensus 139 v~~~~g~s~~~~~~~~~~~~~ 159 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMKI 159 (173)
T ss_dssp EEEETTEEEEEECCHHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHHH
Confidence 5 577666666777777653
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-17 Score=169.18 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=101.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCCCCHHHHHH
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYLM 423 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l~ 423 (568)
+|++++|+||||||||||+++|+|+++|++|+|.... +..+++++|++. +++..++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 6899999999999999999999999999999987532 134788998763 455555555543
Q ss_pred Hhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC--eEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 424 KLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD--ILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 424 ~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~--lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
... +.. ..+++..|+.+.. ...++..++||++|||+++.+|+ +|.|| |+++.+. ...+..+-...
T Consensus 179 ~~~~~~~d----~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~ 247 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAV 247 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHH
T ss_pred HHHhCCCC----EEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHc
Confidence 210 000 0012233332211 12345566999999999999999 67778 6777653 23333333455
Q ss_pred CceEEEEecchHHH---------HhhCceEEEEECCe
Q psy16366 500 QGGVILVSHDERLI---------RETDCELWALEKKN 527 (568)
Q Consensus 500 ~~tvi~vsHd~~~i---------~~~~~~i~~l~~g~ 527 (568)
+.|+|++||+.... ..+...|..+..|+
T Consensus 248 ~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 248 GLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp CCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred CCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 88999999986432 22334677777775
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-17 Score=173.92 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=92.2
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE--EEE--C---CCeeEEEEec
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--LRK--S---PRLRIGKFDQ 406 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~--i~~--~---~~~~i~~~~q 406 (568)
.+|.++||++.| +++.+++++||+| +|+|+||||||||+++|+|...|..|. +.. . ....+++++|
T Consensus 10 ~~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 468899999999 6778999999997 999999999999999999998765441 111 0 1234677777
Q ss_pred CCCCCCCCCCCHHHHHHHhcCCC-HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC---eEEEeCCC-
Q psy16366 407 HSGEHLFPDDTPCEYLMKLFNLP-YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD---ILILDEPT- 481 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~---lLlLDEPt- 481 (568)
... ++..+++++.+....... ....+.+... .. ..++.++++|++|||+++.+|+ +|++||||
T Consensus 83 ~~~--~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~------i~----~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~ 150 (418)
T 2qag_C 83 EGG--VQLLLTIVDTPGFGDAVDNSNCWQPVIDY------ID----SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 150 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHH------HH----HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C
T ss_pred cCC--cccceeeeechhhhhhccchhhHHHHHHH------HH----HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc
Confidence 543 333344433221100000 0000111111 00 1356677889999999999999 99999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 482 NNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
++||+.... +++.|.. +.+||+|.|-.+.
T Consensus 151 ~~L~~~d~~-~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 151 HGLKPLDIE-FMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp CSCCHHHHH-HHHHHTT-TSEEEEEEESTTS
T ss_pred cCCCHHHHH-HHHHHhc-cCcEEEEEEcccC
Confidence 699987753 3444544 5677888776554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.3e-15 Score=142.30 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=96.9
Q ss_pred eeeeeeeE-EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHH--HHHhc
Q psy16366 350 VLLEKVNF-GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEY--LMKLF 426 (568)
Q Consensus 350 ~il~~vs~-~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~--l~~~~ 426 (568)
+.|+.+.. .|.+|++++|+||||||||||++.|++ .+ .+ .+.|+..+. .+ +.... .....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-~~--------~v~~i~~~~--~~----~~~~~~~~~~~~ 69 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-GK--------KVAYVDTEG--GF----SPERLVQMAETR 69 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-CS--------EEEEEESSC--CC----CHHHHHHHHHTT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-CC--------cEEEEECCC--CC----CHHHHHHHHHhc
Confidence 34555554 688999999999999999999999999 22 22 244554332 11 22111 11122
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhH--HHHHHHHHHHccC-CCeEEEeCCCCCCCHHH--------HHHH---
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQ--KARVALAELTLNN-PDILILDEPTNNLDIES--------IDAL--- 492 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGq--kqRv~lA~al~~~-p~lLlLDEPt~~LD~~~--------~~~l--- 492 (568)
+...+. ++..+ .+..+|+++ +++++.+++++.+ |+++|+||||+.+|... ...+
T Consensus 70 ~~~~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (220)
T 2cvh_A 70 GLNPEE---ALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQV 137 (220)
T ss_dssp TCCHHH---HHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHH
T ss_pred CCChHH---HhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHH
Confidence 232222 22211 233455654 5678888899986 99999999999999732 2333
Q ss_pred -HHHHHhcCceEEEEecchH-------------HHHhhCceEEEEECC
Q psy16366 493 -AEAIKNYQGGVILVSHDER-------------LIRETDCELWALEKK 526 (568)
Q Consensus 493 -~~~l~~~~~tvi~vsHd~~-------------~i~~~~~~i~~l~~g 526 (568)
.++.++++.+||+++|... .+..+||.+++|+..
T Consensus 138 L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 138 LLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3333456889999999875 677899999999754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-17 Score=182.98 Aligned_cols=168 Identities=19% Similarity=0.305 Sum_probs=93.3
Q ss_pred CeEEEEeeEEEeCCC-ceeeeee----------eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEEEECC----
Q psy16366 334 PVLGLHDVTFGYPGG-KVLLEKV----------NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP-NKGELRKSP---- 397 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~-~~il~~v----------s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~---- 397 (568)
+.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|.+.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 467899999999421 3455444 355554 999999999999999999999988 799875432
Q ss_pred ----------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHH
Q psy16366 398 ----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAEL 467 (568)
Q Consensus 398 ----------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~a 467 (568)
+..++|++|++. +++..++.+++... ...+...+. .+| ++++.++.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~~--------~~~~~~~~~----------~~s---~~~i~l~i~ 142 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINKA--------QNAIAGEGM----------GIS---HELITLEIS 142 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHHH--------HHHHHCSSS----------CCC---SCCEEEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHHHHHHHH--------HHHhcCCcc----------ccc---hHHHHHHhc
Confidence 346888888763 55555555544321 111111110 011 111223333
Q ss_pred HccCCCeEEEeCC------CCCCCHHHHHHHHHHHHhc-----CceEEEEecchHH--------HHhh----CceEEEEE
Q psy16366 468 TLNNPDILILDEP------TNNLDIESIDALAEAIKNY-----QGGVILVSHDERL--------IRET----DCELWALE 524 (568)
Q Consensus 468 l~~~p~lLlLDEP------t~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~--------i~~~----~~~i~~l~ 524 (568)
....|+++|+||| |++||+.....+.+++.++ ..+++++|||.++ +..+ +..|.++.
T Consensus 143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlT 222 (608)
T 3szr_A 143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILT 222 (608)
T ss_dssp ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEE
T ss_pred CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEec
Confidence 4458999999999 9999999999999988875 3478999999763 3333 24567776
Q ss_pred CCe
Q psy16366 525 KKN 527 (568)
Q Consensus 525 ~g~ 527 (568)
++.
T Consensus 223 K~D 225 (608)
T 3szr_A 223 KPD 225 (608)
T ss_dssp CGG
T ss_pred chh
Confidence 543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-15 Score=162.62 Aligned_cols=77 Identities=26% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCCC-CHhHHHHHHHHHHHccCC--CeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEE
Q psy16366 449 IPIRDL-SGGQKARVALAELTLNNP--DILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 449 ~~~~~L-SgGqkqRv~lA~al~~~p--~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...+.+.|.++ +.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 367888 999999999999999999 999999999999999999999988766 679999999999886 69999999
Q ss_pred ECC
Q psy16366 524 EKK 526 (568)
Q Consensus 524 ~~g 526 (568)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-16 Score=163.59 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=90.0
Q ss_pred eeeee-eEEEeCCCEEEEECCCCChHHHHHHHHhcCc--CCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 351 LLEKV-NFGLDMESRVALVGPNGIGKSTFLNLLKGEL--TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 351 il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+.|.. ...+-|+.-.. .+.. .-..++....+
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~----~G~vi~i~~e~---~~~~-~~i~~i~q~~~ 190 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL----NGSVIWIDTEN---TFRP-ERIREIAQNRG 190 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC----SCEEEEEESSS---CCCH-HHHHHHHHTTT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC----CCeEEEEeCCC---CCCH-HHHHHHHHHcC
Confidence 45554 6899999999999999999999999999988 6766310 01122333221 1100 00111222223
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc-------cCCCeEEEeCCCCCCCHHH------------
Q psy16366 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-------NNPDILILDEPTNNLDIES------------ 488 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~-------~~p~lLlLDEPt~~LD~~~------------ 488 (568)
+... .+++.+-+. . . .-|.+|++++.++++++ .+|++||+||||++||+..
T Consensus 191 ~~~~---~v~~ni~~~----~-~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~ 260 (349)
T 1pzn_A 191 LDPD---EVLKHIYVA----R-A--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 260 (349)
T ss_dssp CCHH---HHGGGEEEE----E-C--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHH
T ss_pred CCHH---HHhhCEEEE----e-c--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHH
Confidence 3322 222222111 0 1 12688999999999998 6899999999999999852
Q ss_pred HHHHHHHH----HhcCceEEEEecchHHHH
Q psy16366 489 IDALAEAI----KNYQGGVILVSHDERLIR 514 (568)
Q Consensus 489 ~~~l~~~l----~~~~~tvi~vsHd~~~i~ 514 (568)
...+...| ++++.|||+++|+...+.
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 33444433 345789999999987554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-16 Score=150.00 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=88.0
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECCC-------eeEEEEecCCCCCCCCCCCHHHHHHHhcC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFN 427 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-------~~i~~~~q~~~~~l~~~~~~~e~l~~~~~ 427 (568)
-..++|++++|+||||||||||+++|+|+++| ..|.|....+ ..++|+||++. +| +.+..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~--~f------~~~~~--- 79 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD--EF------KEMIS--- 79 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH--HH------HHHHH---
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH--HH------HHHHh---
Confidence 35689999999999999999999999999986 5777654321 12455555431 11 11100
Q ss_pred CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEe
Q psy16366 428 LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 507 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vs 507 (568)
.-.+..+.. ....+.|-.+++ +..++..++++||| ||+.+...+.+.+. .+.+|+++|
T Consensus 80 -----------~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~t 137 (219)
T 1s96_A 80 -----------RDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILP 137 (219)
T ss_dssp -----------TTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEEC
T ss_pred -----------cCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEEC
Confidence 000000000 001111111222 34455678999999 99999999999887 367999999
Q ss_pred cchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHH
Q psy16366 508 HDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLT 544 (568)
Q Consensus 508 Hd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~ 544 (568)
||++.+.. |+ +..| .++.+++.+.+..
T Consensus 138 h~~~~l~~---Rl--~~rG-----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 138 PSKIELDR---RL--RGRG-----QDSEEVIAKRMAQ 164 (219)
T ss_dssp SSHHHHHH---HH--HTTS-----CSCHHHHHHHHHH
T ss_pred CCHHHHHH---HH--HHcC-----CCCHHHHHHHHHH
Confidence 99998875 32 4555 3566666654433
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-15 Score=159.10 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=81.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCC-ccEEEECC-------CeeEEEEecCCCCCCCCCCCHHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPN-KGELRKSP-------RLRIGKFDQHSGEHLFPDDTPCEY 421 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~-------~~~i~~~~q~~~~~l~~~~~~~e~ 421 (568)
++|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|.... +..+++++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3567665 7899999999999999999999999999997 89885321 0111222221
Q ss_pred HHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc
Q psy16366 422 LMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501 (568)
Q Consensus 422 l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~ 501 (568)
.+|+. +..| +.+|+++|..+|++||+|||| |.++...+.+.. ..+.
T Consensus 190 -----------------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~ 235 (372)
T 2ewv_A 190 -----------------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGH 235 (372)
T ss_dssp -----------------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTC
T ss_pred -----------------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCC
Confidence 12221 1344 469999999999999999999 888766655554 3467
Q ss_pred eEEEEecchH
Q psy16366 502 GVILVSHDER 511 (568)
Q Consensus 502 tvi~vsHd~~ 511 (568)
+||+++|+.+
T Consensus 236 ~vi~t~H~~~ 245 (372)
T 2ewv_A 236 LVFGTLHTNT 245 (372)
T ss_dssp EEEECCCCCS
T ss_pred EEEEEECcch
Confidence 8999999865
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-16 Score=161.22 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=111.3
Q ss_pred EEEeeEEE---eCC-Cceee---------eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----
Q psy16366 337 GLHDVTFG---YPG-GKVLL---------EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR----- 398 (568)
Q Consensus 337 ~~~~v~~~---y~~-~~~il---------~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----- 398 (568)
.+++++|+ |++ +.++| +++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.....
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56778887 742 23455 9999999999999999999999999999999999999999876421
Q ss_pred ----eeEEEEe-cCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCC
Q psy16366 399 ----LRIGKFD-QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPD 473 (568)
Q Consensus 399 ----~~i~~~~-q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~ 473 (568)
..+++++ |++. ..++++...+..|+.++...|+
T Consensus 217 ~~~~~~v~~v~~q~~~------------------------------------------~~~~~~~t~~~~i~~~l~~~pd 254 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK------------------------------------------EEENAPVTAATLLRSCLRMKPT 254 (361)
T ss_dssp TTCSSEEEEECC----------------------------------------------------CCHHHHHHHHTTSCCS
T ss_pred cccCCEEEEeecCccc------------------------------------------cccccccCHHHHHHHHHhcCCC
Confidence 1233333 2110 0123445678899999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHHHHHHHhh
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREKLLTSLGE 548 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~ 548 (568)
.+++|||+. .+.. .+.+.+..-..|+|.++|+.. +...++|+..+..+.......+++..+..+...+..
T Consensus 255 ~~l~~e~r~---~~~~-~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~~~~~~~~~~~i~~~l~~~~~~ 324 (361)
T 2gza_A 255 RILLAELRG---GEAY-DFINVAASGHGGSITSCHAGS-CELTFERLALMVLQNRQGRQLPYEIIRRLLYLVVDV 324 (361)
T ss_dssp EEEESCCCS---THHH-HHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHCCE
T ss_pred EEEEcCchH---HHHH-HHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhccccccCCCHHHHHHHHHHHcCE
Confidence 999999986 2222 234444433347899999976 667788888776654211133555565555555543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-15 Score=157.87 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=100.0
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcCCCccEEEE--C---CCeeEEEEecC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKGELRK--S---PRLRIGKFDQH 407 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~--~---~~~~i~~~~q~ 407 (568)
.|++.+ +++| ++.+ |+++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... . .+..++|++|+
T Consensus 16 ~l~~~~-~~~y-~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGF-DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-C-C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEE-CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 345666 7889 5666 9999999999999 99999999999999999999842 222111 0 12368999997
Q ss_pred CCCCCCCCCCHHHHHHHhcCCC------------HHHHHHHHHhC-CCCCc----cccC---------C-CCCCCHhHHH
Q psy16366 408 SGEHLFPDDTPCEYLMKLFNLP------------YEKSRRQLGMF-GLPSY----AHTI---------P-IRDLSGGQKA 460 (568)
Q Consensus 408 ~~~~l~~~~~~~e~l~~~~~~~------------~~~~~~~L~~~-~l~~~----~~~~---------~-~~~LSgGqkq 460 (568)
+. +++..|+.+++....... ...+..+|... ++... .+.+ + -..|+-..
T Consensus 91 ~~--l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SN--VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp ----CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Cc--cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 53 333334333221100011 12233445444 43310 1110 0 02456555
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecch
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDE 510 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~ 510 (568)
+.|+++|..+++|+++|+||..|.+.....+.+.+.+ .+.+|+++|.|-
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 7999999999999999999999999888777777664 356889888764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-14 Score=147.70 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHhcCC--C--c--cCCCc---------hHHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEE----cC
Q psy16366 178 DAAEPRARRILAGLGF--T--T--IYIPS---------SRVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHL----DM 236 (568)
Q Consensus 178 ~~~~~~~~~~L~~lg~--~--~--L~~eP---------n~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L----~~ 236 (568)
.+.+++.+..|+..-+ . . ||||| .+|.++|+++ +.|||+||||++++. +||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccC
Confidence 4778877766544211 1 2 78999 2777777776 589999999999874 79999999 89
Q ss_pred CeeeEE
Q psy16366 237 KKLFYY 242 (568)
Q Consensus 237 g~l~~~ 242 (568)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=141.62 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=68.5
Q ss_pred CCCCCCCHhHHHHH------HHHHHHccC-CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCce
Q psy16366 449 IPIRDLSGGQKARV------ALAELTLNN-PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCE 519 (568)
Q Consensus 449 ~~~~~LSgGqkqRv------~lA~al~~~-p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~ 519 (568)
.++..|||||+||| ++|++++.+ |++|||||||++||+.....+.+.|.++. .+||+||||.+ +..+|++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 36689999999988 567889999 99999999999999999999999998863 58999999987 5688999
Q ss_pred EEEEE-CCe
Q psy16366 520 LWALE-KKN 527 (568)
Q Consensus 520 i~~l~-~g~ 527 (568)
+++|+ +|.
T Consensus 355 ~~~l~k~~~ 363 (371)
T 3auy_A 355 IINVKKDGN 363 (371)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 99997 443
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-13 Score=128.87 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|.+|++++|+||||||||||++.|++ .++|..|. ....+-|+.-.. .+....+.+. ....+...+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~----~~~~~~~i~~~~---~~~~~~~~~~-~~~~g~~~~~--- 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGG----GEGKAMYIDTEG---TFRPERLLAV-AERYGLSGSD--- 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTC----CSSEEEEEESSS---CCCHHHHHHH-HHHTTCCHHH---
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCC----CCCeEEEEECCC---CcCHHHHHHH-HHHcCCCHHH---
Confidence 478999999999999999999999999 56552221 011233333221 1111011111 1223333332
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHH-HHHHHH--ccCCCeEEEeCCCCCCCHH-------H-----HHHHHHHH----
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARV-ALAELT--LNNPDILILDEPTNNLDIE-------S-----IDALAEAI---- 496 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv-~lA~al--~~~p~lLlLDEPt~~LD~~-------~-----~~~l~~~l---- 496 (568)
+++.+. ....++..+...+ .-+..+ ..+|+++++||||+.+|.. + ...+...|
T Consensus 89 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~ 160 (243)
T 1n0w_A 89 VLDNVA--------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA 160 (243)
T ss_dssp HHHTEE--------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCeE--------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 222211 1123566554432 222233 3589999999999999975 2 23333333
Q ss_pred HhcCceEEEEecchHHHH-------------------hhCceEEEEECC
Q psy16366 497 KNYQGGVILVSHDERLIR-------------------ETDCELWALEKK 526 (568)
Q Consensus 497 ~~~~~tvi~vsHd~~~i~-------------------~~~~~i~~l~~g 526 (568)
++.+.|||+++|...... .+||.+++|..+
T Consensus 161 ~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 161 DEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 345789999999765443 378999998854
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-15 Score=148.70 Aligned_cols=131 Identities=21% Similarity=0.265 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHh---cCcCCCccEEEECC---C----eeEEEEecCCCCCCCCCCCHHHHHHHh-----
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLK---GELTPNKGELRKSP---R----LRIGKFDQHSGEHLFPDDTPCEYLMKL----- 425 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~---~----~~i~~~~q~~~~~l~~~~~~~e~l~~~----- 425 (568)
++++++|+||||||||||+++|+ |+..|+.|++.+.. . ..+++++|+. .+++..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 99999999875431 1 1233344543 245555665554321
Q ss_pred ------cCC--CHHHHHHHHHhCCCC-------------CccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEe----C
Q psy16366 426 ------FNL--PYEKSRRQLGMFGLP-------------SYAHTIPIRDLSGGQKARVALAELT-LNNPDILILD----E 479 (568)
Q Consensus 426 ------~~~--~~~~~~~~L~~~~l~-------------~~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLD----E 479 (568)
.+. ....++.+.....+. .....+++..||| |+ +++ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 122 222233332212211 0111235678999 66 677 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q psy16366 480 PTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~~~ 500 (568)
||++||..+...+.+.|.++.
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHH
Confidence 999999999988888887763
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-15 Score=157.18 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=88.1
Q ss_pred eeeeeEEEeC--CCEEEEECCCCChHHHHHHHHhcCcCCCc----cEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh
Q psy16366 352 LEKVNFGLDM--ESRVALVGPNGIGKSTFLNLLKGELTPNK----GELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL 425 (568)
Q Consensus 352 l~~vs~~i~~--Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~ 425 (568)
...|+++|.+ |++++|+||||||||||+++|+|+++|+. |.+.+.... .... ..+ ..... ..+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~-~~~-~~~~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDE-QAM-QYSDY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCT-TSS-CTTTH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCc-ccC-ChhHH-HHHHHH
Confidence 5679999999 99999999999999999999999999998 665321100 0000 011 11111 111111
Q ss_pred cCCCHHHHHHHHHhCCC--CCccccCCCCCCCHhHHHHHHHHHHHc-cCCCeEEEeC---CC------CCCCHHHHHHHH
Q psy16366 426 FNLPYEKSRRQLGMFGL--PSYAHTIPIRDLSGGQKARVALAELTL-NNPDILILDE---PT------NNLDIESIDALA 493 (568)
Q Consensus 426 ~~~~~~~~~~~L~~~~l--~~~~~~~~~~~LSgGqkqRv~lA~al~-~~p~lLlLDE---Pt------~~LD~~~~~~l~ 493 (568)
............+.+-+ ...... .+..+|+|++++..+++++. .+|+++|||| |+ .++|...+..+.
T Consensus 230 ~q~~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~ 308 (365)
T 1lw7_A 230 HQRYIDYAVRHSHKIAFIDTDFITT-QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQ 308 (365)
T ss_dssp HHHHHHHHHHHCSSEEEESSCHHHH-HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHH
T ss_pred HHHHHHHHHhccCCEEEEeCCchHH-HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHH
Confidence 10000000011111100 111111 23456778888888888774 6999999999 65 589998888888
Q ss_pred HHHHh----cCceEEEEecc
Q psy16366 494 EAIKN----YQGGVILVSHD 509 (568)
Q Consensus 494 ~~l~~----~~~tvi~vsHd 509 (568)
++|.+ .+.+||+++|.
T Consensus 309 ~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 309 QLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHHHcCCCEEEeCCC
Confidence 88743 36789999985
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-15 Score=139.01 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=81.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCe---------eEEEEecCCCCCCCCCCCHHHHHHHhc--
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRL---------RIGKFDQHSGEHLFPDDTPCEYLMKLF-- 426 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------~i~~~~q~~~~~l~~~~~~~e~l~~~~-- 426 (568)
.|.+|++++|+||||||||||+++|+|. |..|.|..+... .++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999998 678888765321 1233333211 1123333322100
Q ss_pred ---CCCHHHHHHHHHhCCCCCccc-cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--
Q psy16366 427 ---NLPYEKSRRQLGMFGLPSYAH-TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-- 500 (568)
Q Consensus 427 ---~~~~~~~~~~L~~~~l~~~~~-~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-- 500 (568)
+.....+..++..+++..... ..++..+|+|++|+++++|++..+|+++ +|+.....+.+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 79 YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 000000000011111211110 2245689999999999999999999887 68888888888776542
Q ss_pred ceEEEEec
Q psy16366 501 GGVILVSH 508 (568)
Q Consensus 501 ~tvi~vsH 508 (568)
..+++.|+
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 23444454
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=138.87 Aligned_cols=75 Identities=28% Similarity=0.355 Sum_probs=67.4
Q ss_pred CCCCCCCHhHHHHHHHHHHHc----cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecchHHHHhhCceEE
Q psy16366 449 IPIRDLSGGQKARVALAELTL----NNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al~----~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.++..||||||||++||++|+ .+|++|||||||++||+..+..|.+.|.++. .++|+|||+..++ ..|++++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 456789999999999999999 5899999999999999999999999998863 5899999998765 5799999
Q ss_pred EEE
Q psy16366 522 ALE 524 (568)
Q Consensus 522 ~l~ 524 (568)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-14 Score=145.10 Aligned_cols=118 Identities=18% Similarity=0.092 Sum_probs=81.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHH
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEK 432 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~ 432 (568)
++++|+ +|++++|+|+||+||||++..|++.+.+..|.|. ++..++. .. ...+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~--------l~~~d~~----~~-~~~~ql---------- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL--------LVAADTQ----RP-AAREQL---------- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEE--------EEECCSS----CH-HHHHHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE--------EecCCcc----cH-hHHHHH----------
Confidence 556777 8999999999999999999999999988777654 3333321 00 111111
Q ss_pred HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC-CCCCCHHHHHHHHHHHHhc
Q psy16366 433 SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP-TNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 433 ~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP-t~~LD~~~~~~l~~~l~~~ 499 (568)
..+....+++-.... ...+..+.+|.+|+++...+++++|+||| +.++|......+..+....
T Consensus 146 -~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 146 -RLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp -HHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred -HHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 112334455432111 12344566789999998899999999999 9999998888887776654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-14 Score=134.35 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=62.2
Q ss_pred EeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCee------EEEEecCCCCCC
Q psy16366 339 HDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLR------IGKFDQHSGEHL 412 (568)
Q Consensus 339 ~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~------i~~~~q~~~~~l 412 (568)
.++++.| +++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|......- ..+++|++. +
T Consensus 11 ~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~--l 86 (158)
T 1htw_A 11 EFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFD--L 86 (158)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEE--C
T ss_pred HHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccc--c
Confidence 4567778 5667899999999999999999999999999999999999 9999987543110 126788763 5
Q ss_pred CCCCCHHHHH
Q psy16366 413 FPDDTPCEYL 422 (568)
Q Consensus 413 ~~~~~~~e~l 422 (568)
+ .+++.+++
T Consensus 87 ~-~ltv~e~l 95 (158)
T 1htw_A 87 Y-RLADPEEL 95 (158)
T ss_dssp T-TCSCTTHH
T ss_pred c-cCCcHHHH
Confidence 5 66765554
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=119.39 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=28.8
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|+||+|.+|++++|+||||||||||++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc
Confidence 6899999999999999999999999997654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.5e-15 Score=159.91 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=42.7
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
..+|+++|++++|+ ++||++.+|++++|+||||||||||+|+|+|...
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 34688889988885 7999999999999999999999999999999743
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-13 Score=144.99 Aligned_cols=139 Identities=25% Similarity=0.313 Sum_probs=86.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc-----------CCCccEEEECCCeeEEEEecCCCCCCCCCCCHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL-----------TPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-----------~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e 420 (568)
-++++|+++.|+.++|+|+|||||||||++|+|.. .|+.|.|.......+ .+.+.+. +... ..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~-~l~DtpG--li~~--a~- 220 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERF-TLADIPG--IIEG--AS- 220 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEE-EEEECCC--CCCC--GG-
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceE-EEEeccc--cccc--hh-
Confidence 58999999999999999999999999999999983 233333332211111 1111111 1100 00
Q ss_pred HHHHhcCCCHHH------HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHH---H
Q psy16366 421 YLMKLFNLPYEK------SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESID---A 491 (568)
Q Consensus 421 ~l~~~~~~~~~~------~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~---~ 491 (568)
...++.... +..+|..+++. ..++.+||+|++|++++|++|+..|.||+| |.+|+.... .
T Consensus 221 ---~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~ 289 (416)
T 1udx_A 221 ---EGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKA 289 (416)
T ss_dssp ---GSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHH
T ss_pred ---hhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHH
Confidence 001111111 11123344444 236778999999999999999999999999 999986542 3
Q ss_pred HHHHHHhcCceEEEEe
Q psy16366 492 LAEAIKNYQGGVILVS 507 (568)
Q Consensus 492 l~~~l~~~~~tvi~vs 507 (568)
+.+.+.+.+.++|+||
T Consensus 290 l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 290 LADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHTTTSCEEECC
T ss_pred HHHHHHhcCCeEEEEE
Confidence 3334444455777666
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-13 Score=148.78 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=101.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCC
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFP 414 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~ 414 (568)
-+++||++.+|++++|+|+||||||||+++|+|+++|+.|+|.+.. +..|+|++|++. +++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 3678899999999999999999999999999999999999997631 224788888753 444
Q ss_pred CCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc-cCCC-eEEEeCCCCCCCHHHHH
Q psy16366 415 DDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL-NNPD-ILILDEPTNNLDIESID 490 (568)
Q Consensus 415 ~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~-~~p~-lLlLDEPt~~LD~~~~~ 490 (568)
..++.+++.... +.+. -++...|...... .|-.--++++.+++++. ..|+ +||...||.|.|.. .
T Consensus 361 ~~tV~e~l~~a~~~~~Dv----VLIDTaGrl~~~~-----~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al--~ 429 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNIDV----LIADTAGRLQNKS-----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--S 429 (503)
T ss_dssp HHHHHHHHHHHHHTTCSE----EEECCCCSCCCHH-----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--H
T ss_pred HHHHHHHHHHHHhcCCCE----EEEeCCCccchhh-----hHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--H
Confidence 455555543211 1100 0112222221111 11122347788888664 4574 55555599886653 2
Q ss_pred HHHHHHHhcCceEEEEecchH---------HHHhhCceEEEEECCe
Q psy16366 491 ALAEAIKNYQGGVILVSHDER---------LIRETDCELWALEKKN 527 (568)
Q Consensus 491 ~l~~~l~~~~~tvi~vsHd~~---------~i~~~~~~i~~l~~g~ 527 (568)
.+..+-...+.|.|++||--. .+..+...|..+..|.
T Consensus 430 ~ak~f~~~~~itgvIlTKLD~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 430 QAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp HHHHHHHHTCCSEEEEECGGGCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHhhcCCCEEEEEcCCCcccccHHHHHHHHHCCCEEEEecCC
Confidence 222223346789999999333 3444556777777775
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-15 Score=155.27 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=104.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC---------------CCee
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS---------------PRLR 400 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~---------------~~~~ 400 (568)
++++++++.| +...+++++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+. .+.+
T Consensus 30 ie~~~~~~~~-~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRA-AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHH-HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCccccc-ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 4566777788 45679999999999999999999999999999999999999999998642 1234
Q ss_pred EEEEecCCCCCCCCCCC------------HHHHH--H-----------------------Hh-------cCCC-HHH---
Q psy16366 401 IGKFDQHSGEHLFPDDT------------PCEYL--M-----------------------KL-------FNLP-YEK--- 432 (568)
Q Consensus 401 i~~~~q~~~~~l~~~~~------------~~e~l--~-----------------------~~-------~~~~-~~~--- 432 (568)
+++++|++. +|...+ ..+.+ . .. .... ...
T Consensus 109 i~~v~q~~~--~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 109 MARLAIDRN--AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp STTGGGCTT--EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred heeeccCcc--cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 677787753 332111 01110 0 00 0000 000
Q ss_pred ----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc------CCCeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 433 ----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN------NPDILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 433 ----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
+.+....+.+. ..+..+...+|+|+++++..+.+++. .|++++ ||++|...++.|.+.|.++
T Consensus 187 i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 01111112221 11111234689999999999999887 688876 9999999999999988764
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-12 Score=135.83 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=78.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEEC--------CCeeEEEEecCCCCCCCCCCCHHHHH
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKS--------PRLRIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~--------~~~~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
++++++. .+|++++|+||||||||||+|+|+|... |+.|+|... ....+++++|+.. +++..++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHhh
Confidence 4555553 3799999999999999999999999999 999998753 2346889988753 44444554431
Q ss_pred HHhcCCCHHH----HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 423 MKLFNLPYEK----SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 423 ~~~~~~~~~~----~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
..+.+.+. +.+++..+++..+.+ +++.+|| ||+||++||++++
T Consensus 283 --l~~l~~~e~~~~~~e~l~~~gl~~f~~-~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 --LWHLEPEQITQGFVEFHDYLGHCKYRD-CKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp --CCCCCHHHHHHTSGGGGGGTTCSSSTT-CCSSSCT-TCHHHHHHHHTSS
T ss_pred --hcCCCHHHHHHHHHHHHHHcCCchhcC-CCcccCC-HHHHHHHHHhcCC
Confidence 22344433 335678888887665 4678999 9999999998753
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-15 Score=158.77 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=93.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
++.++++++.| +...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.... ..
T Consensus 143 ~~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 45677787777 455688888 53 89999999999999999999999999999999986421 01
Q ss_pred eEEEEe---------cCCCCCCCCC----CCHHHHHHHh-cC---------CCHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 400 RIGKFD---------QHSGEHLFPD----DTPCEYLMKL-FN---------LPYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 400 ~i~~~~---------q~~~~~l~~~----~~~~e~l~~~-~~---------~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
.+++.+ |+|...++.+ .|+.+.+... .+ .+...+...|..+++.... .+..|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~---~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL---ISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---HHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---HHHHHHH
Confidence 223433 6654222333 3555544321 11 1123344467788887543 4678999
Q ss_pred hHHHHHHHHHHHccCCCeEEE
Q psy16366 457 GQKARVALAELTLNNPDILIL 477 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlL 477 (568)
||+|| ||++|+.+|+++.-
T Consensus 297 g~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEE--EEEEECTTTCEEEE
T ss_pred HHHHH--hhhhhcCCCCccCC
Confidence 99999 99999999998763
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-13 Score=124.65 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=72.1
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|.. +.|+ +..+.+.. ...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------~~~~------------~~~~~~~~--------~~~ 84 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------GYFF------------DTKDLIFR--------LKH 84 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------CCEE------------EHHHHHHH--------HHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------EEEE------------EHHHHHHH--------HHH
Confidence 45667899999999999999999999999988766631 1111 12222111 111
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEEEecch
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVILVSHDE 510 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~vsHd~ 510 (568)
..... ... -....+.+|++||||||++ ++|+.....+.+++... +.++|++||..
T Consensus 85 ~~~~~------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 85 LMDEG------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHT------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HhcCc------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11110 000 0112234899999999985 99999998888888653 67899999975
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.5e-13 Score=138.99 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=101.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------CeeEEEEecCCCCCCCCCCCHHHHH
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------------RLRIGKFDQHSGEHLFPDDTPCEYL 422 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~i~~~~q~~~~~l~~~~~~~e~l 422 (568)
.+|++++|+||||||||||+++|+|+++|+.|+|.... +..+.+++|.. .+++..++.+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHHH
Confidence 57999999999999999999999999999999987531 11244777654 355555555554
Q ss_pred HHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC
Q psy16366 423 MKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500 (568)
Q Consensus 423 ~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~ 500 (568)
.... +.+. -+++..|...... ..+.+|| .+++++..++.+++||.+|. .|. ...+..+-...+
T Consensus 205 ~~~~~~~~d~----vliDtaG~~~~~~-~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~--~~~~~~~~~~~~ 269 (328)
T 3e70_C 205 QHAKARGIDV----VLIDTAGRSETNR-NLMDEMK-------KIARVTKPNLVIFVGDALAG-NAI--VEQARQFNEAVK 269 (328)
T ss_dssp HHHHHHTCSE----EEEEECCSCCTTT-CHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THH--HHHHHHHHHHSC
T ss_pred HHHHhccchh----hHHhhccchhHHH-HHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHH--HHHHHHHHHhcC
Confidence 3210 0000 0122223322111 1222333 48899999999999996664 433 222333333567
Q ss_pred ceEEEEecch---------HHHHhhCceEEEEECCeEEE--EcCCHHHHHHHH
Q psy16366 501 GGVILVSHDE---------RLIRETDCELWALEKKNIRK--FNGDFDDYREKL 542 (568)
Q Consensus 501 ~tvi~vsHd~---------~~i~~~~~~i~~l~~g~i~~--~~g~~~~~~~~~ 542 (568)
.|+|++||.- ..+......|..+..|+.+. ..-+.+.+...+
T Consensus 270 it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~~l 322 (328)
T 3e70_C 270 IDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLERI 322 (328)
T ss_dssp CCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHHHH
T ss_pred CCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHHHH
Confidence 8999999954 34455667888888886421 123455555443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-15 Score=141.32 Aligned_cols=157 Identities=12% Similarity=0.003 Sum_probs=91.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ 436 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~ 436 (568)
|++++|+||||||||||+++|++ |..|.+..+.. ..+++++|... .....++.+.+.. .+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~-------~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITD-------LTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHH-------HHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHH-------HHHHH
Confidence 68999999999999999999987 66787765321 12233333210 0111122222211 01111
Q ss_pred HHhCCC----CC---ccccCCCCCC--CHhHHHHHHHHH------HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--
Q psy16366 437 LGMFGL----PS---YAHTIPIRDL--SGGQKARVALAE------LTLNNPDILILDEPTNNLDIESIDALAEAIKNY-- 499 (568)
Q Consensus 437 L~~~~l----~~---~~~~~~~~~L--SgGqkqRv~lA~------al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-- 499 (568)
+. .+. +. .........+ |+|+++++.++. +++.+|....+|+ +||+..+.. .+.+..+
T Consensus 70 ~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~ 144 (189)
T 2bdt_A 70 LL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI 144 (189)
T ss_dssp HH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC
T ss_pred Hh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC
Confidence 11 110 00 0000112235 888888887777 8888888888884 899988777 6666654
Q ss_pred -CceEEEEecc-hHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 500 -QGGVILVSHD-ERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 500 -~~tvi~vsHd-~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+.+||.+||. ++.+.++|++|+ .+|+++ +.|+.+.+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGS-CC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEE-EeecCCch
Confidence 4589999998 999999999997 888875 46666554
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-12 Score=122.03 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+++.| .+|.+|++++|+||||||||||+++|+|..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356777 799999999999999999999999999963
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.5e-12 Score=113.66 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=65.9
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCH
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY 430 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~ 430 (568)
+++++ +|+.++|+||||+|||||+++|++.+.+ .|. ++.|++... +...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~---~~~~--------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAAS---MPLT--------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTT---SCCC---------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHH---hhHH---------------
Confidence 45555 8999999999999999999999999887 451 234444321 1111
Q ss_pred HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---Cce-EEEE
Q psy16366 431 EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGG-VILV 506 (568)
Q Consensus 431 ~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~t-vi~v 506 (568)
+++.+|++||||||+. +|....+.|.++++.. +.+ +|++
T Consensus 79 ------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiit 121 (149)
T 2kjq_A 79 ------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLG 121 (149)
T ss_dssp ------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 2356899999999998 6655577777777643 567 8888
Q ss_pred ecc
Q psy16366 507 SHD 509 (568)
Q Consensus 507 sHd 509 (568)
||.
T Consensus 122 s~~ 124 (149)
T 2kjq_A 122 SEY 124 (149)
T ss_dssp ESS
T ss_pred CCC
Confidence 884
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-11 Score=124.74 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHhcCC-------Cc---cCCCch---------HHHHHHhc---cCCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 177 ADAAEPRARRILAGLGF-------TT---IYIPSS---------RVHEIMRT---WKKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 177 ~~~~~~~~~~~L~~lg~-------~~---L~~ePn---------~L~~~l~~---~~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
..+++++++..++..-. .+ |+|||. ++.++++. .+.|||+||||+++ ...||+|++|
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~~~l 357 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRKLRI 357 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCEEEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEEEEE
Confidence 35777776655422111 11 889991 55555544 36899999999998 5679999999
Q ss_pred cCCeee
Q psy16366 235 DMKKLF 240 (568)
Q Consensus 235 ~~g~l~ 240 (568)
++|+++
T Consensus 358 ~~G~i~ 363 (365)
T 3qf7_A 358 TGGVVV 363 (365)
T ss_dssp ETTEEC
T ss_pred ECCEEE
Confidence 999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=127.61 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=73.9
Q ss_pred EEEEECCCCChHHHHHHHHhc-CcCCCccEEEECC---------CeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG-ELTPNKGELRKSP---------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~---------~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
.+.|+||||+|||||+++|++ ++.|+.|.+.... ...+++++|.....+.... . .......+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~ 109 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----M----GNNDRIVI 109 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC------------CCHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----c----CCcchHHH
Confidence 389999999999999999999 7889888875432 2345666654421111110 0 00111123
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDER 511 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~ 511 (568)
++.+..+.-...... .. .||| +..+|+|+|+|||++ ||..+...|.+.|.+. +.++|++||+..
T Consensus 110 ~~~i~~~~~~~~~~~-~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 110 QELLKEVAQMEQVDF-QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp HHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred HHHHHHHHHhccccc-cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 444433321111111 11 4676 778999999999999 9999999999999986 357999999975
Q ss_pred H
Q psy16366 512 L 512 (568)
Q Consensus 512 ~ 512 (568)
.
T Consensus 176 ~ 176 (354)
T 1sxj_E 176 P 176 (354)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.9e-11 Score=126.14 Aligned_cols=150 Identities=13% Similarity=0.153 Sum_probs=82.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHH--HHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLN--LLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk--~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|.+|++++|+||||||||||++ ++.+..+|+.|. ....+-|+.-.. .+...... .+....++..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg----~~~~viyid~E~---~~~~~rl~-~~a~~~gl~~~~--- 242 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG----GEGKCLYIDTEG---TFRPVRLV-SIAQRFGLDPDD--- 242 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSSEEEEEESSS---CCCHHHHH-HHHHHTTCCHHH---
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC----CCCcEEEEeCCC---ccCHHHHH-HHHHHcCCChHh---
Confidence 57899999999999999999999 446777765551 112233443221 11100011 112223333321
Q ss_pred HHHhCCCCCccccCCCCCCCH-hHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHHH------------HHHHHHH----
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSG-GQKARVALAELT--LNNPDILILDEPTNNLDIESI------------DALAEAI---- 496 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSg-GqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~~~------------~~l~~~l---- 496 (568)
++..+-+ ....+. .+.+.+.-+..+ ..+|+++++||||+.+|.... ..++..|
T Consensus 243 vleni~~--------~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~la 314 (400)
T 3lda_A 243 ALNNVAY--------ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLA 314 (400)
T ss_dssp HHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEE--------eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 1221111 111222 223333333332 357999999999999996422 3333333
Q ss_pred HhcCceEEEEecch-------------------HHHHhhCceEEEEECC
Q psy16366 497 KNYQGGVILVSHDE-------------------RLIRETDCELWALEKK 526 (568)
Q Consensus 497 ~~~~~tvi~vsHd~-------------------~~i~~~~~~i~~l~~g 526 (568)
++++.|||+|+|.. ..+..+++.+++|+.+
T Consensus 315 ke~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 315 DQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 45688999999983 2346678888888765
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-12 Score=135.88 Aligned_cols=61 Identities=26% Similarity=0.307 Sum_probs=50.8
Q ss_pred ceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEe
Q psy16366 59 DIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCE 122 (568)
Q Consensus 59 ~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~ 122 (568)
.++++++++.|+ +..+++++ |+|.+|+++||+||||||||||+++|+|.. -|..+.+.+++
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~--~~~~g~i~~~G 106 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA--SADIIVLALIG 106 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS--CCSEEEEEEES
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC--CCCEEEEEEec
Confidence 578899999997 77899999 999999999999999999999999999963 23333444444
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-13 Score=130.09 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=35.7
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCc
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~ 116 (568)
|+++.+|+++ .+|++++|+||||||||||+++|+|. .|..+.+
T Consensus 10 ~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 10 LGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred HhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4566788885 89999999999999999999999997 5443443
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-13 Score=131.98 Aligned_cols=138 Identities=18% Similarity=0.095 Sum_probs=83.4
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH--HhcC----CCHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--KLFN----LPYEK 432 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~--~~~~----~~~~~ 432 (568)
..+|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+.. +..+.+. ...+ .....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF--HLDN-RLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG--BCCH-HHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC--cCCH-HHHHHhcccccCCCCchhhHHH
Confidence 3689999999999999999999999999875 4 23567776642 1111 1111110 0001 12222
Q ss_pred HHHHHHhCCCCC----ccccCCCCCCCHhHHHHHHHH-HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEe
Q psy16366 433 SRRQLGMFGLPS----YAHTIPIRDLSGGQKARVALA-ELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVS 507 (568)
Q Consensus 433 ~~~~L~~~~l~~----~~~~~~~~~LSgGqkqRv~lA-~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vs 507 (568)
....+..+.... .... ....+|+||+||++++ ++++.++.++++|||.- ..+..+-..+|+++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 233333221111 0111 1236899999999998 88888888888888841 11233345789999
Q ss_pred cchHH-HHhhCce
Q psy16366 508 HDERL-IRETDCE 519 (568)
Q Consensus 508 Hd~~~-i~~~~~~ 519 (568)
++.+. +.+.+.|
T Consensus 156 ~~~~~~~~R~~~R 168 (208)
T 3c8u_A 156 VPMADLEARLVQR 168 (208)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 98876 4555544
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-13 Score=140.42 Aligned_cols=129 Identities=17% Similarity=0.187 Sum_probs=77.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc--------CCCccEEEECCCe--------------------------eEEEE---e
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL--------TPNKGELRKSPRL--------------------------RIGKF---D 405 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~~~~--------------------------~i~~~---~ 405 (568)
++++|+|+||||||||||+|.|.. .|+.|+|.++... .++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 479999999999999999999987 7888987543210 11222 2
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCC-HHHH-HH---------------HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNLP-YEKS-RR---------------QLGMFGLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~~-~~~~-~~---------------~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
|++. ++.+.++.|.. ++. ...+ +. .+..+++...... . .+||+||+||+..++++
T Consensus 85 q~~~--~~~~~~v~E~~----~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~-~-~~ls~g~~Q~~~ad~il 156 (318)
T 1nij_A 85 DKGN--IQFDRLVIECT----GMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ-M-NQFTIAQSQVGYADRIL 156 (318)
T ss_dssp HHTS--CCCSEEEEEEE----TTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH-H-HHCHHHHHHHHTCSEEE
T ss_pred hcCC--CCCCEEEEeCC----CCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH-H-hhchHHHHHHHhCCEEE
Confidence 2211 11111111110 110 1110 00 1223344433332 2 37999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecch
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDE 510 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~ 510 (568)
+.+|+++ ||| ..+.+.|++. +.+|+++||+.
T Consensus 157 l~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 157 LTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 9999988 999 4444555443 56899999954
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-12 Score=132.69 Aligned_cols=119 Identities=14% Similarity=-0.014 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh---------cC----
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL---------FN---- 427 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---------~~---- 427 (568)
++.+++|+|++|||||||+++|++++.+. |. ....+.+++|+.. +++ .+..+.+... .+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f--~~~-~~~~~~l~~~~~~~~l~~~~g~p~a 101 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF--YLT-HEDQLKLNEQFKNNKLLQGRGLPGT 101 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG--BCC-HHHHHHHHHHTTTCGGGSSSCSTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc--cCC-hHHHHHHhccccccchhhhccCcch
Confidence 46689999999999999999999998763 21 1223445588863 333 3444443211 01
Q ss_pred CCHHHHHHHHHhCCCC------Cc-cccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHH
Q psy16366 428 LPYEKSRRQLGMFGLP------SY-AHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 428 ~~~~~~~~~L~~~~l~------~~-~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~ 487 (568)
.+...+.+.+..+.-. .. ........+||||+||+++|++...+|+|||+||||+++|+.
T Consensus 102 ~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 102 HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 1234555666665432 10 011123689999999999973333399999999999999985
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-13 Score=127.80 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=75.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCC---ccEEEECCC---------------eeEE----EEecCCCCCCCCCCCHHH
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPN---KGELRKSPR---------------LRIG----KFDQHSGEHLFPDDTPCE 420 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~---------------~~i~----~~~q~~~~~l~~~~~~~e 420 (568)
++++|+|+||||||||+++|+|+++|+ .|.|..+.. ..+| +++|++. +|......+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~--~~i~~~~~~ 80 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKL--AFIRRVSEE 80 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEE--EEEEECCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcE--EEEecCChh
Confidence 579999999999999999999999998 888864321 1234 5555542 110000000
Q ss_pred HHHHhcCCCHHHHHHHHHh-C-CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeE-------EEeCCCC---CCCHHH
Q psy16366 421 YLMKLFNLPYEKSRRQLGM-F-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDIL-------ILDEPTN---NLDIES 488 (568)
Q Consensus 421 ~l~~~~~~~~~~~~~~L~~-~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lL-------lLDEPt~---~LD~~~ 488 (568)
. ...+.+++.. + |++. .-...|||||+||++|||+++.+|++. +-|.|.. .+|...
T Consensus 81 ~--------~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~ 148 (171)
T 2f1r_A 81 E--------GNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDE 148 (171)
T ss_dssp H--------HTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTC
T ss_pred h--------hhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCccc
Confidence 0 0023344444 3 3322 223459999999999999999999873 2355532 234445
Q ss_pred HHHHHHHHHh
Q psy16366 489 IDALAEAIKN 498 (568)
Q Consensus 489 ~~~l~~~l~~ 498 (568)
.+.+.++|.+
T Consensus 149 ~~~~a~~i~~ 158 (171)
T 2f1r_A 149 VERIAEFILS 158 (171)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-14 Score=152.03 Aligned_cols=157 Identities=11% Similarity=0.079 Sum_probs=97.4
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC--------eeEEEEecCCC------------
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR--------LRIGKFDQHSG------------ 409 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~i~~~~q~~~------------ 409 (568)
.++++++|.|..|+.++|+|||||||||||++|+|+++|+.|.|..... ..+++..|...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4678999999999999999999999999999999999999999875421 23444444321
Q ss_pred --------CCCCCCCCHHHH---HHHhc-CC------CHHHHHHHHHhC-----CCCCcccc------CCCCCCCHhHHH
Q psy16366 410 --------EHLFPDDTPCEY---LMKLF-NL------PYEKSRRQLGMF-----GLPSYAHT------IPIRDLSGGQKA 460 (568)
Q Consensus 410 --------~~l~~~~~~~e~---l~~~~-~~------~~~~~~~~L~~~-----~l~~~~~~------~~~~~LSgGqkq 460 (568)
..++.+.+..|. +.... +. ....+..++.++ ++...... .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 011112222221 11111 10 001122223332 22211100 123468999999
Q ss_pred HHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE--EecchHHHHhhCc
Q psy16366 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVIL--VSHDERLIRETDC 518 (568)
Q Consensus 461 Rv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~--vsHd~~~i~~~~~ 518 (568)
|++++ ++ | |+|||+.+...+.+.|.++ +.|+++ +||+++.+...|.
T Consensus 408 R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 87764 12 7 9999998766666666554 457775 8999999987764
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.3e-12 Score=133.31 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=52.5
Q ss_pred cceEEeeeEEEeC-CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 58 VDIKVENFSLSAK-GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 58 ~~I~i~nls~~~~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
..++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|.. -|..+.+.++++
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~--~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT--RADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS--CCSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc--CCCeEEEEEece
Confidence 4678999999997 67899999 999999999999999999999999999963 233445555544
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-11 Score=141.32 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=41.7
Q ss_pred ccceEEee-----eEEEe-CCceeeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 57 SVDIKVEN-----FSLSA-KGVELFHNANLQIAS-------GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 57 ~~~I~i~n-----ls~~~-~~~~ll~~isl~i~~-------Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...|.++| +++.| ++..+++|++|++.+ |++++|+||||||||||||.| |.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 34699999 99988 667899999999987 999999999999999999999 75
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-10 Score=116.10 Aligned_cols=137 Identities=13% Similarity=0.103 Sum_probs=89.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
.+|++++|+|||||||||++..|++.+.++.|. ++.++.+++. ..+..+.+. .+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~-----r~~a~eqL~-----------~~~~~ 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTY-----RIAAVEQLK-----------TYAEL 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCS-----STTHHHHHH-----------HHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCcc-----cchHHHHHH-----------HHHHh
Confidence 368999999999999999999999999887782 5677777652 223333332 22334
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----C-ceEEEE--ecchHH
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY----Q-GGVILV--SHDERL 512 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~-~tvi~v--sHd~~~ 512 (568)
+|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|......+.++..-. . .+++++ ||+...
T Consensus 160 ~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~ 228 (296)
T 2px0_A 160 LQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYED 228 (296)
T ss_dssp TTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHH
T ss_pred cCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHH
Confidence 4544211 122 3345666665 4899999999 8899986554444333221 1 234555 999888
Q ss_pred HHhhCceEEEEECCeEEE
Q psy16366 513 IRETDCELWALEKKNIRK 530 (568)
Q Consensus 513 i~~~~~~i~~l~~g~i~~ 530 (568)
+.++++++..+..+.++.
T Consensus 229 ~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 229 MKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 888877765555666653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-13 Score=145.97 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=102.5
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhc------------CcCCCccEEEECC------------CeeE---EEEecCCCCC
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKG------------ELTPNKGELRKSP------------RLRI---GKFDQHSGEH 411 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~------------~~~i---~~~~q~~~~~ 411 (568)
+.+|.+++|+|+||||||||+++|+| .+.|+.|.+.... ...+ .++.+-+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG-- 94 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG-- 94 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc--
Confidence 46799999999999999999999999 5678999987653 1222 24444443
Q ss_pred CCCCCCHHH-----HHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC--CeEEEeCCCCCC
Q psy16366 412 LFPDDTPCE-----YLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP--DILILDEPTNNL 484 (568)
Q Consensus 412 l~~~~~~~e-----~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p--~lLlLDEPt~~L 484 (568)
+....+..+ ++......+ .++..+.... ...+..+||+. +| +++++|||+.++
T Consensus 95 l~~~~s~~e~L~~~fl~~ir~~d-----~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSHVRAVD-----AIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp GCCCCCSSSSSCHHHHHHHTTCS-----EEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHH-----HHHHHHhccc---cceeeeecccc------------CcchhhhhchhhhHHH
Confidence 333333211 111111100 1111122211 12444567653 89 999999999999
Q ss_pred CHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEE-EEECC-eEEEEcCCHHHH
Q psy16366 485 DIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELW-ALEKK-NIRKFNGDFDDY 538 (568)
Q Consensus 485 D~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~-~l~~g-~i~~~~g~~~~~ 538 (568)
|+..+....+.+... +.|| +||+...+..+|+++. +|++| ++. +.+++++-
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~-~~~~~~~~ 211 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI-RKGDWSNR 211 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG-GGSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee-ecCCCCHH
Confidence 999998888888765 3354 3999999999999998 88999 765 33554443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-11 Score=126.54 Aligned_cols=105 Identities=13% Similarity=0.012 Sum_probs=74.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CC----------C-eeEEEEecCCCCC---CCCCCCHHHHH
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SP----------R-LRIGKFDQHSGEH---LFPDDTPCEYL 422 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~----------~-~~i~~~~q~~~~~---l~~~~~~~e~l 422 (568)
..|++++|+||||||||||+|+|+ +++|+.|+|.. .+ . ..+||++|.|... +++.+|+ +.+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l 240 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REV 240 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGG
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHH
Confidence 469999999999999999999999 99999999876 21 0 1379999988532 2245565 433
Q ss_pred HH-----------hcC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 423 MK-----------LFN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 423 ~~-----------~~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
.. ..+ .+...+.++|+.++|.......++..|||.+++++.|||
T Consensus 241 ~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 241 RNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 111 123457889999999863334467899998899999986
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-13 Score=135.60 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=83.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEE-------------------eCCCEEEEECCCCChHHHHHHHHhcCcC--CCccEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGL-------------------DMESRVALVGPNGIGKSTFLNLLKGELT--PNKGEL 393 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i-------------------~~Ge~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i 393 (568)
+|++++|++.| .+++++++|.+ .+|+++||+||||||||||+++|+|++. |++|.|
T Consensus 37 ~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 37 DLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred ccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 57889999999 37899999988 8999999999999999999999999998 999998
Q ss_pred EE---CCC-------eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 394 RK---SPR-------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 394 ~~---~~~-------~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
.. +.. ..++++ |... ++...++.+++. .+..+--....-..|....+.+ +|+.
T Consensus 114 ~vi~~d~~~~~~~~~~~~~~v-q~~~--~~~~~~~~~~~~------------~~~~l~~~~~~i~~P~~~~~~~--~~~~ 176 (308)
T 1sq5_A 114 ELITTDGFLHPNQVLKERGLM-KKKG--FPESYDMHRLVK------------FVSDLKSGVPNVTAPVYSHLIY--DVIP 176 (308)
T ss_dssp EEEEGGGGBCCHHHHHHHTCT-TCTT--SGGGBCHHHHHH------------HHHHHTTTCSCEEECCEETTTT--EECT
T ss_pred EEEecCCccCcHHHHHhCCEe-ecCC--CCCCccHHHHHH------------HHHHHhCCCCceeccccccccc--Cccc
Confidence 75 321 113333 3221 223334433322 1211111111011243344443 3443
Q ss_pred HHHHHccCCCeEEEeCCCCCCC
Q psy16366 464 LAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD 485 (568)
.+.+.+..|+++|+|.|....+
T Consensus 177 ~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 177 DGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp TCCEEEC-CCEEEEECTTTTCC
T ss_pred ccceecCCCCEEEECchhhCCC
Confidence 3334556789999999998877
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-10 Score=110.82 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=27.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|.+|++++|+||||||||||+++|+|..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999953
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.4e-14 Score=134.22 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=74.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC-------------CCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHH---
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT-------------PNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM--- 423 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~--- 423 (568)
.+|++++|+||||||||||+++|+|+++ |..|++ + .+.|.++ +..++-.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~---g~~~~~~----------~~~~~~~~i~ 66 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--D---GKDYYFV----------TREMMQRDIA 66 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--B---TTTBEEC----------CHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--C---CceEEEc----------cHHHHHHHHH
Confidence 5799999999999999999999999875 333431 0 0111111 1111100
Q ss_pred ------------HhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHH---HHHH-HHccCCCeEEEeCCCCCCCHH
Q psy16366 424 ------------KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV---ALAE-LTLNNPDILILDEPTNNLDIE 487 (568)
Q Consensus 424 ------------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv---~lA~-al~~~p~lLlLDEPt~~LD~~ 487 (568)
..++.+...+++++..-... .... .+ .|-+... ..++ +++.+|.+++|||||+++|.+
T Consensus 67 ~~~~l~~~~~~~n~~g~~~~~i~~~~~~~~~~-~~~~----~~-~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 67 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRIC-VLDV----DL-QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp HTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEEC----CH-HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCCCEeeeeecCccCCCCHHHHHHHHHcCCcE-EEEC----CH-HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 01123445555555431100 0000 00 1111110 1455 678889999999999999998
Q ss_pred HHHHHHHHHHhcCceEEEEecchHHHHhhCceEEEE
Q psy16366 488 SIDALAEAIKNYQGGVILVSHDERLIRETDCELWAL 523 (568)
Q Consensus 488 ~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~~i~~l 523 (568)
+.+.+.+.|...... +.++|.. ..+|.+++.
T Consensus 141 ~e~~i~~~l~~~~~~-~~~a~~~----~~~D~iivn 171 (198)
T 1lvg_A 141 TEESLAKRLAAARTD-MESSKEP----GLFDLVIIN 171 (198)
T ss_dssp CHHHHHHHHHHHHHH-TTGGGST----TTCSEEEEC
T ss_pred CHHHHHHHHHHHHHH-HHHhhcc----CCceEEEEC
Confidence 888888777654222 2345511 456776544
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-13 Score=142.27 Aligned_cols=158 Identities=22% Similarity=0.245 Sum_probs=101.2
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCC-------CEEEEECCCCChHHHHHHHHhcCc----CCCccEEEEC---------
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDME-------SRVALVGPNGIGKSTFLNLLKGEL----TPNKGELRKS--------- 396 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~G-------e~~~ivG~NGsGKSTLlk~l~G~~----~p~~G~i~~~--------- 396 (568)
+.++++..| ++..+++++++.|..| +.++|+||||+|||||+++|+|.+ .|++|.+...
T Consensus 20 r~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 20 RPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344566667 6677899999999877 899999999999999999999998 6777765421
Q ss_pred --CCeeEEEEecCCCCCCCCCCCHHHHHHHh---cCC--------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 397 --PRLRIGKFDQHSGEHLFPDDTPCEYLMKL---FNL--------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 397 --~~~~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
....|.+++|.+. ++. ++.+.+... ... ....+...+..++|.. .. .++..||+|++||+.
T Consensus 99 ~~~~~~v~~iDE~~~--l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at-~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEIHR--LNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-AT-TRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETGGG--CCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EE-SCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcchhh--cCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ec-CCcccCCHHHHHhcC
Confidence 2346888888642 432 455554321 111 1122334455666654 33 356899999999986
Q ss_pred HHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHHhhCc
Q psy16366 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIRETDC 518 (568)
Q Consensus 464 lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~~~~ 518 (568)
++ .+||+.+.+.+.++|.+.... .-++|+.+.+..++.
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHH
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 54 667777777777766543110 113688777666554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=116.72 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=43.5
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC-CceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~-~~~i~~~~qe~ 125 (568)
|.+.|+++++.|.+|+.++|+||||||||||++.|+|... |. +..+.++..+.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEE 74 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSS
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcC
Confidence 4467999999999999999999999999999999999632 23 33677777664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=117.09 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=71.7
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHH
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSR 434 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~ 434 (568)
++|...+|++++|+|||||||||++..|++.+.+..|+|. ++..+. +. .... +...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~--------lv~~D~----~r-~~a~-----------eqL~ 152 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVV--------LAAADT----FR-AAAI-----------EQLK 152 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE--------EEEECT----TC-HHHH-----------HHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEE--------EEcccc----cc-HHHH-----------HHHH
Confidence 3445678999999999999999999999999998776653 333332 10 0111 1233
Q ss_pred HHHHhCCCCCccccCCCCCCCHhHHHHH---HHHHHHccCCCeEEEeCCCC
Q psy16366 435 RQLGMFGLPSYAHTIPIRDLSGGQKARV---ALAELTLNNPDILILDEPTN 482 (568)
Q Consensus 435 ~~L~~~~l~~~~~~~~~~~LSgGqkqRv---~lA~al~~~p~lLlLDEPt~ 482 (568)
.++..++++- +..+|+|+.+++ +|++++..+|+++|+|||..
T Consensus 153 ~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 153 IWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 4555666642 235789999999 89999999999999999985
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-12 Score=117.12 Aligned_cols=49 Identities=24% Similarity=0.020 Sum_probs=43.6
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..++++++|+++.+++++||+|.+|++++|+||||||||||+|+|+|..
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3445677787788999999999999999999999999999999999964
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-12 Score=133.45 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=37.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEE
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLY 120 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~ 120 (568)
+++++||++.+|+.++|+||||||||||+++|+|... |..+.+.+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i 204 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISI 204 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEE
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEE
Confidence 7899999999999999999999999999999999632 33444444
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-10 Score=110.47 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=41.9
Q ss_pred CceeeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANL-QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl-~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|.+.|+++.. .|.+|+.++|+||||||||||++.|++... +.+..+.++..+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE 61 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc
Confidence 4456788887 899999999999999999999999997532 3445677766543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.7e-10 Score=129.17 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=39.6
Q ss_pred ceEEeeeEEEe-----CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 59 DIKVENFSLSA-----KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 59 ~I~i~nls~~~-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
.|.+++....+ ++..+++|++|++.+|++++|+||||||||||||+|+
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46666655443 2456899999999999999999999999999999993
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-10 Score=121.46 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=42.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
.+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 579999999999 999999999999999999999999999999864
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.8e-10 Score=103.26 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.6
Q ss_pred cCCC--c---------hHHHHHHhccCCeEEEEe---CCHHHHHhhhce
Q psy16366 196 IYIP--S---------SRVHEIMRTWKKTLLVVS---HDQSFLNNICTD 230 (568)
Q Consensus 196 L~~e--P---------n~L~~~l~~~~~tvlvVS---Hd~~~l~~v~d~ 230 (568)
++|| | +++.+++.+.+.|+|+++ ||++++..+|++
T Consensus 104 ilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 104 IIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp EECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred EEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 8899 8 267788888778788888 599999999998
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-11 Score=122.88 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=46.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|+++|++|+|+ .++|+++||+|.+|++++||||||||||||+++|+|.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 588999999997 7899999999999999999999999999999999985
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-13 Score=134.62 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=80.9
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEecCCCCCCCCCC
Q psy16366 348 GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 348 ~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~l~~~~ 416 (568)
...+|++++|.+.+| ++|+||||||||||+++|+|.+.+ |.+..... ..+++++|... ...+..
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCe
Confidence 346789999999999 999999999999999999999876 45543321 01222222110 000000
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC------------CC
Q psy16366 417 TPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN------------NL 484 (568)
Q Consensus 417 ~~~e~l~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~------------~L 484 (568)
++.+.+.... ....... .. .+.... ...+..|||||+||+.|++++..+|++| |||+. -.
T Consensus 107 ~~~Deid~~~--~~r~~~~-~~--~~~~~~-~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 107 IFFDEVDALC--PRRSDRE-TG--ASVRVV-NQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEEETCTTTC--C------------CTTHH-HHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred Eeeehhhhhh--cccCCCc-ch--HHHHHH-HHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 0000000000 0000000 00 011111 1245689999999999999999999985 99864 34
Q ss_pred CHHHHHHHHHHHHh
Q psy16366 485 DIESIDALAEAIKN 498 (568)
Q Consensus 485 D~~~~~~l~~~l~~ 498 (568)
|...+..+++.+.+
T Consensus 179 ~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 179 PPADRLAILKTITK 192 (274)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHh
Confidence 66777777776653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=98.69 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=83.2
Q ss_pred eeeee-eEEEeCCCEEEEECCCCChHHHHHHHH-hcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH--hc
Q psy16366 351 LLEKV-NFGLDMESRVALVGPNGIGKSTFLNLL-KGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK--LF 426 (568)
Q Consensus 351 il~~v-s~~i~~Ge~~~ivG~NGsGKSTLlk~l-~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~--~~ 426 (568)
.|+.+ .-.|.+|++++|+||||||||||+..+ .+..++ .+. +.|+.-+ .+..+.... ..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~--------v~~~~~e--------~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEP--------GIYVALE--------EHPVQVRQNMAQF 73 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCC--------EEEEESS--------SCHHHHHHHHHTT
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCe--------EEEEEcc--------CCHHHHHHHHHHc
Confidence 45555 567899999999999999999996544 444433 222 3344322 122222111 12
Q ss_pred CCCHHHHHH--HHH-------hCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCC--CHHH----H
Q psy16366 427 NLPYEKSRR--QLG-------MFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNL--DIES----I 489 (568)
Q Consensus 427 ~~~~~~~~~--~L~-------~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~L--D~~~----~ 489 (568)
+...+.... .+. .++....... ....-+....+.+..++.++ .+|+++++|+|+..+ |+.. .
T Consensus 74 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 74 GWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK-YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp TCCCHHHHHHTSEEEEECSTTTTCC--CCCS-CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred CCCHHHHhhCCcEEEEecchhhccccccccc-ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 333222111 000 0110000000 00011112222223333332 579999999999988 5422 2
Q ss_pred HHHHHHHHhcCceEEEEecchHH--------HHhhCceEEEEEC
Q psy16366 490 DALAEAIKNYQGGVILVSHDERL--------IRETDCELWALEK 525 (568)
Q Consensus 490 ~~l~~~l~~~~~tvi~vsHd~~~--------i~~~~~~i~~l~~ 525 (568)
..|.+.+++.+.|||+++|.... +..+||.++.++.
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 34455556778899999998775 4577899988863
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=115.04 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=102.7
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH----h
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----L 425 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~----~ 425 (568)
+.|+++...+.+|+.+.|.|++|+|||||+..|++...+..|. .+.|+.-+ ++..+...+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E--------~s~~~l~~r~~~~~ 255 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLE--------MSAQQLVMRMLCAE 255 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESS--------SCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECC--------CCHHHHHHHHHHHH
Confidence 4688888889999999999999999999999999877654442 34555432 222222111 1
Q ss_pred cCC----------CHHH---HHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH----
Q psy16366 426 FNL----------PYEK---SRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI---- 486 (568)
Q Consensus 426 ~~~----------~~~~---~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~---- 486 (568)
.+. .... +...++.++....... ....+|.++.+ +.++.+. .+|+++|+|+|+...+.
T Consensus 256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 122 2221 2223333333222222 23579999987 4455554 68999999999998742
Q ss_pred ----HHHHHHHHHHH----hcCceEEEEec---------c--hH--------HHHhhCceEEEEECCeE
Q psy16366 487 ----ESIDALAEAIK----NYQGGVILVSH---------D--ER--------LIRETDCELWALEKKNI 528 (568)
Q Consensus 487 ----~~~~~l~~~l~----~~~~tvi~vsH---------d--~~--------~i~~~~~~i~~l~~g~i 528 (568)
..+..+...|+ +++.+||+++| | +. .+...||.+++|..+..
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23344444443 56789999999 3 22 46778999999986654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.5e-11 Score=121.27 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=62.3
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CCC-----------eeEEEEecCCCC-------------
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SPR-----------LRIGKFDQHSGE------------- 410 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~-----------~~i~~~~q~~~~------------- 410 (568)
++..|++++|+||||||||||||+|+|+.+|+.|+|.. .++ ..+||++|.|..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34569999999999999999999999999999999875 210 147899998752
Q ss_pred -CCCCCCCHHHHHHHh-c---CCCHHHHHHHHHhCCCCCccccCCCCCCCH
Q psy16366 411 -HLFPDDTPCEYLMKL-F---NLPYEKSRRQLGMFGLPSYAHTIPIRDLSG 456 (568)
Q Consensus 411 -~l~~~~~~~e~l~~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSg 456 (568)
.++++.++ +++... . ......+.++|+.++|+.....+.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 24556655 433211 0 112345788999999963333335567774
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-09 Score=111.09 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=40.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+..+||++.+|++++||||||||||||++.|+|... |.++.+.+.+.++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDT 138 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecc
Confidence 457889999999999999999999999999999643 4456777766554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-10 Score=116.67 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=58.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE---CC-------C-ee--EEEEecCCCCCCCC--CCCHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK---SP-------R-LR--IGKFDQHSGEHLFP--DDTPCEYLM 423 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~-------~-~~--i~~~~q~~~~~l~~--~~~~~e~l~ 423 (568)
+.+|++++|+||||||||||+|+|+|+..|..|+|.. .+ . .. +||++|.|....+. ..++ +.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 3479999999999999999999999999999999875 11 0 11 68999998633322 4566 5442
Q ss_pred H-------h------cC-----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHH
Q psy16366 424 K-------L------FN-----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKA 460 (568)
Q Consensus 424 ~-------~------~~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 460 (568)
. . .+ .+...+.++++.++|...... ....|+.|++|
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 1 1 01 122457888999999764333 23467777776
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=123.65 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=40.5
Q ss_pred ceEEeeeEEEe-----CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSA-----KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~-----~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++..-.. +++.+++|++|+ .+|++++|+||||||||||||+|+|.
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46666544321 456799999999 99999999999999999999999984
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-09 Score=123.49 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=40.9
Q ss_pred ceEEeeeEEEe-------CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 59 DIKVENFSLSA-------KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 59 ~I~i~nls~~~-------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|.+++..-.. ++..+++|++|++.+|++++|+||||||||||||+|++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 46666654432 34678999999999999999999999999999999985
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-09 Score=103.77 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=24.5
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..|+|+||+|.+|++++|+||||||||||+++|+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999999999999999995
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-08 Score=103.86 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHhc------CCCc--cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhcee--eEEc
Q psy16366 177 ADAAEPRARRILAGL------GFTT--IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDI--IHLD 235 (568)
Q Consensus 177 ~~~~~~~~~~~L~~l------g~~~--L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~i--i~L~ 235 (568)
..+.+++.+..++.. .-.. |+|||. +|.++++.+ +.|+|+|||+.+ +..+||++ +.|.
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~~~v~~~ 297 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLLHGVTMV 297 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEEEEEEES
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceEEEEEEe
Confidence 346667666555432 2122 789991 555555554 679999999965 55689987 8899
Q ss_pred CCeeeEEcCChh
Q psy16366 236 MKKLFYYKGNFT 247 (568)
Q Consensus 236 ~g~l~~~~g~y~ 247 (568)
+|.......+.+
T Consensus 298 ~g~s~~~~~~~~ 309 (322)
T 1e69_A 298 NGVSAIVPVEVE 309 (322)
T ss_dssp SSCEEEEECCC-
T ss_pred CCEEEEEEEEcc
Confidence 987766555444
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-09 Score=104.95 Aligned_cols=40 Identities=20% Similarity=0.082 Sum_probs=25.3
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.+|+|+||++.+|+++||+||||||||||+++|+|.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-09 Score=103.31 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=23.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHh-cCcCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLK-GELTP 388 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~-G~~~p 388 (568)
....++||++.+|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-10 Score=123.04 Aligned_cols=166 Identities=12% Similarity=0.095 Sum_probs=93.5
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEE---CCCeeEEEEecCCC--CCCC--CCCCHHHHHH-
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRK---SPRLRIGKFDQHSG--EHLF--PDDTPCEYLM- 423 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~---~~~~~i~~~~q~~~--~~l~--~~~~~~e~l~- 423 (568)
.+++.+.++.++.|.|++||||||+++.|.. +..++.|++.. +.+. .. ++... .++. .-..+.+...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e--l~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE--LSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG--GGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh--hhhhccCCcccceeecCHHHHHHH
Confidence 4678888999999999999999999999876 44555565542 1111 00 11110 0111 0112222111
Q ss_pred -HhcCCCHHHHHHHHHhCCCCCccccC--CCCCCCHhHHHHH----------HHHHHHccCCC-eEEEeCCCCCCCHHH-
Q psy16366 424 -KLFNLPYEKSRRQLGMFGLPSYAHTI--PIRDLSGGQKARV----------ALAELTLNNPD-ILILDEPTNNLDIES- 488 (568)
Q Consensus 424 -~~~~~~~~~~~~~L~~~~l~~~~~~~--~~~~LSgGqkqRv----------~lA~al~~~p~-lLlLDEPt~~LD~~~- 488 (568)
.......++-.+.|..+|+....... ....+|+||+|+. .+++++...|. ++++||++..+|...
T Consensus 236 L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~ 315 (512)
T 2ius_A 236 LRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGK 315 (512)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhhH
Confidence 11000011122567777876532210 1135788887652 35566777898 899999999888422
Q ss_pred -HHHHHHHH----HhcCceEEEEecchH-------HHHhhCceEEE
Q psy16366 489 -IDALAEAI----KNYQGGVILVSHDER-------LIRETDCELWA 522 (568)
Q Consensus 489 -~~~l~~~l----~~~~~tvi~vsHd~~-------~i~~~~~~i~~ 522 (568)
...++..| +.++.++|++||+.. +...+.+||.+
T Consensus 316 ~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 316 KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 22222222 234668999999987 45566666654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.2e-09 Score=107.42 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=39.4
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 76 HNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 76 ~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..+||++.+|++++||||||||||||++.|+|... |.++.+.+.+.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDT 195 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccc
Confidence 46788999999999999999999999999999642 4456777766554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.8e-08 Score=93.62 Aligned_cols=48 Identities=25% Similarity=0.246 Sum_probs=36.6
Q ss_pred eeeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANL-QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl-~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+.+.. .|.+|+.++|+||||||||||++.|++ +.+..+.|+..+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCC
Confidence 34555544 588999999999999999999999998 2344666766543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-09 Score=110.98 Aligned_cols=52 Identities=17% Similarity=0.184 Sum_probs=37.0
Q ss_pred eeeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANL-------QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl-------~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+++.+ .+.+|+.++|+|||||||||||++|+|...+ ..+..+..++..+
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-TKYHHILTIEDPI 162 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHH-HCCCEEEEEESSC
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccC-CCCcEEEEccCcH
Confidence 45555554 6788899999999999999999999995322 1234555555443
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=98.65 E-value=4.2e-08 Score=101.54 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=25.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.+..+.+.+| ..+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556666655 88999999999999999985
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-07 Score=98.83 Aligned_cols=136 Identities=15% Similarity=0.219 Sum_probs=80.7
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.|.+|+++.|.||||||||||+..++.......| .+.|+.-+.. + .. .. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~--------~vlyi~~E~~--~----~~--~~--------------a 106 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--------IAAFIDAEHA--L----DP--EY--------------A 106 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSCC--C----CH--HH--------------H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--------eEEEEECCCC--c----CH--HH--------------H
Confidence 5789999999999999999998888765543333 3455554321 1 11 11 1
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHccC--CCeEEEeCCCCCC----------CH----H---HH---HHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNN--PDILILDEPTNNL----------DI----E---SI---DALAEA 495 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~--p~lLlLDEPt~~L----------D~----~---~~---~~l~~~ 495 (568)
..+|+...... .....+.. +-+.++++++.. |+++|+|||++.+ |. . .. ..|...
T Consensus 107 ~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~ 183 (349)
T 2zr9_A 107 KKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183 (349)
T ss_dssp HHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHH
Confidence 22333211000 01112333 345677777654 9999999999998 32 1 11 222333
Q ss_pred HHhcCceEEEEecchH----------------HHHhhCceEEEEECC
Q psy16366 496 IKNYQGGVILVSHDER----------------LIRETDCELWALEKK 526 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~----------------~i~~~~~~i~~l~~g 526 (568)
+++++.+||+++|-.. .+..+|+.++.+..+
T Consensus 184 a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 184 LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp HHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEE
T ss_pred HHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEe
Confidence 4677899999999654 255678877777654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-09 Score=119.53 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=95.7
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCc-cEEEEC------CCeeEEEEecCCCCCC--
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK-GELRKS------PRLRIGKFDQHSGEHL-- 412 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~-G~i~~~------~~~~i~~~~q~~~~~l-- 412 (568)
+.-| +...+++++++.+..|+.++|+||||+|||||+++|++++++.. |.+... ....++++++.....+
T Consensus 41 ~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 41 DQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119 (604)
T ss_dssp HHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHH
T ss_pred ceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHH
Confidence 3345 67789999999999999999999999999999999999999887 544431 1234555554321000
Q ss_pred ------------------CCCCCHHHHHHH-hc---CC-----CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHH
Q psy16366 413 ------------------FPDDTPCEYLMK-LF---NL-----PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALA 465 (568)
Q Consensus 413 ------------------~~~~~~~e~l~~-~~---~~-----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA 465 (568)
+...+..+++.. .. +. .......+++.+.. ... ..+.+|+|++|++..+
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~---~~~-~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH---DPF-QSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC---CCC-----CCCCGGGGEECC
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe---chh-hcCCccccccccccCc
Confidence 000000000000 00 00 00011122222211 111 2357999999999999
Q ss_pred HHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 466 ELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 466 ~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
++...++.+|+|||... |++.....|.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 899999999999974
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-08 Score=95.72 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 460 ARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 460 qRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
+.+.+|++++.+|+++++| ||++|..++..+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3477899999999999999 999999999999888754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-09 Score=113.62 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=40.6
Q ss_pred ccceEEeeeEEEeCCceeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCC
Q psy16366 57 SVDIKVENFSLSAKGVELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 57 ~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
...+++.+ ++.|++.+ |+++||+|.+|++ +|||||||||||||+++|+|..
T Consensus 14 ~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 14 CRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ---CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 34566677 88888888 9999999999999 9999999999999999999964
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.5e-10 Score=107.34 Aligned_cols=53 Identities=30% Similarity=0.300 Sum_probs=42.2
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEEC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKS 396 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 396 (568)
.|+++|++..| +. +|+|.+ ++++|+|||||||||||++|+|++.|++|.|.++
T Consensus 9 ~l~l~~~~~~~-~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~ 61 (227)
T 1qhl_A 9 SLTLINWNGFF-AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 61 (227)
T ss_dssp EEEEEEETTEE-EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC---
T ss_pred EEEEEeeeccc-CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEEC
Confidence 57888887655 21 456666 8999999999999999999999999999987643
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-09 Score=111.64 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=54.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQ-----------------------IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~-----------------------i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~ 115 (568)
.|+++|+++.|. ++++++++. +.+|+++||+||||||||||+++|+|...+.++.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 588999999984 677777764 8899999999999999999999999964443333
Q ss_pred ceEEEEeccccCCc
Q psy16366 116 IDLLYCEQEVEASD 129 (568)
Q Consensus 116 ~~i~~~~qe~~~~~ 129 (568)
..+.++.|+....+
T Consensus 121 ~~v~~v~qd~~~~~ 134 (312)
T 3aez_A 121 PRVDLVTTDGFLYP 134 (312)
T ss_dssp CCEEEEEGGGGBCC
T ss_pred CeEEEEecCccCCc
Confidence 45778888764433
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-09 Score=105.73 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=36.2
Q ss_pred CCeEEEEee-EEEeCCCceeeeeeeEEEeC---CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 333 PPVLGLHDV-TFGYPGGKVLLEKVNFGLDM---ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 333 ~~~l~~~~v-~~~y~~~~~il~~vs~~i~~---Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++|+++|+ +++|.++.++|+++||+|.+ |++++|+|++||||||++++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 99994456799999999999 9999999999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-10 Score=122.26 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=80.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE-CC---C--eeEEEEecCCCCCCCCCCCHHHHHH
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK-SP---R--LRIGKFDQHSGEHLFPDDTPCEYLM 423 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~-~~---~--~~i~~~~q~~~~~l~~~~~~~e~l~ 423 (568)
.+|+++++++.+|++++|+||||||||||+++|+|.. .|.+.. .. + ..+|+++|.+. .++.+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~~~~~~~~lg~~~q~~~-~l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLPLDRLNFELGVAIDQFL-VVFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSCTTTHHHHHGGGTTCSC-EEETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEeccchhHHHHHHHhcchhH-HHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999853 677654 21 1 13555555542 1111111111000
Q ss_pred H-hcCCCH----HHHHHHHH---------------hCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEE-EeCCCC
Q psy16366 424 K-LFNLPY----EKSRRQLG---------------MFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILI-LDEPTN 482 (568)
Q Consensus 424 ~-~~~~~~----~~~~~~L~---------------~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLl-LDEPt~ 482 (568)
+ ...... ..+...+. ..-+....-......+++|+++|++.+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0 000000 11223332 11111111122467899999999999888899999988 999987
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.9e-12 Score=126.69 Aligned_cols=127 Identities=18% Similarity=0.211 Sum_probs=77.5
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEEEEe
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIGKFD 405 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~~~~ 405 (568)
+++++.+.| +...++++++|.+.+| ++|+||||||||||+++|++.+. .|.+..... ..+++++
T Consensus 51 ~l~~l~~~~-~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHH-HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 455666667 4567899999999999 99999999999999999999875 566654310 1233344
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCC-------CHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLFNL-------PYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~~~-------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|... ...+..++.+.+...... ........+.. .+..|||||+||+.+++++..+|++ ||
T Consensus 126 ~~~~-~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 126 ETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHH-TSCSEEEEEETHHHHHCC--------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHH-hcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 4321 111222222211110000 00111112211 1346899999999999999999987 56
Q ss_pred CCC
Q psy16366 479 EPT 481 (568)
Q Consensus 479 EPt 481 (568)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 553
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.2e-08 Score=100.96 Aligned_cols=119 Identities=22% Similarity=0.299 Sum_probs=77.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEE-ECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELR-KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l 442 (568)
.++|+|+||+|||||++.|+|.. +..|... ......++.+.+... .+..++.
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~--------------------------~~~l~Dt 221 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYF--------------------------RYQIIDT 221 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTE--------------------------EEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCc--------------------------eEEEEeC
Confidence 69999999999999999999975 2212110 011122333322110 0111222
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe-CCCCCCCHHHHHHHHHHHHh-c-CceEEEEe--cchH
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD-EPTNNLDIESIDALAEAIKN-Y-QGGVILVS--HDER 511 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD-EPt~~LD~~~~~~l~~~l~~-~-~~tvi~vs--Hd~~ 511 (568)
++... .++..+|+|+++++. +.+...++-++++| +|++++|......+...+.. . +..+|+|. ||+.
T Consensus 222 ~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 222 PGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 33333 256789999998776 55555677789999 99999999987777766654 3 56788888 8874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=90.89 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=33.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccC----CCceEEEEeccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIP----SSIDLLYCEQEV 125 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip----~~~~i~~~~qe~ 125 (568)
-|.+|+.++|+||||||||||++.|++....-| ....+.|+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 478999999999999999999999998422111 134556665543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-09 Score=105.08 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=35.7
Q ss_pred cceEEeee-EEEe-CCceeeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 58 VDIKVENF-SLSA-KGVELFHNANLQIAS---GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 58 ~~I~i~nl-s~~~-~~~~ll~~isl~i~~---Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..|+++|+ +++| ++..+|+++||+|.+ |++++|+|++||||||++++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999 9999 778899999999999 999999999999999999999974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.6e-08 Score=90.22 Aligned_cols=108 Identities=13% Similarity=0.010 Sum_probs=69.7
Q ss_pred ee--eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE----------E-------CCCeeEEEEecCCCCC
Q psy16366 351 LL--EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR----------K-------SPRLRIGKFDQHSGEH 411 (568)
Q Consensus 351 il--~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~----------~-------~~~~~i~~~~q~~~~~ 411 (568)
.+ ++++|.+.+| +++|+||||||||||+++|.+++.+..|... . .....|.+++|++...
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~ 92 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRG 92 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcc
Confidence 46 7889999999 9999999999999999999998887765321 1 1345788889887544
Q ss_pred CCCC---CCHHHHHH----H-----hcCCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHH
Q psy16366 412 LFPD---DTPCEYLM----K-----LFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVA 463 (568)
Q Consensus 412 l~~~---~~~~e~l~----~-----~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~ 463 (568)
+.+. .++...+. . ........+.+++..+++..... .-++.||.++++
T Consensus 93 ~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~----~~~~qg~~~~l~ 152 (182)
T 3kta_A 93 FPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY----NIVLQGDITKFI 152 (182)
T ss_dssp SSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT----TEECTTCTTHHH
T ss_pred cccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC----EEEEcccHHHHH
Confidence 3321 11110000 0 00124567788899898875321 235666665554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-08 Score=105.98 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=54.9
Q ss_pred CCCCCCHhHHHHH--HHHHHHcc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 450 PIRDLSGGQKARV--ALAELTLN---------------NPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 450 ~~~~LSgGqkqRv--~lA~al~~---------------~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
..+.+||||+|-. +|+.++++ .-.+++|||. +-+|.+.+...++++++++--+|++|=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 4689999999963 33333332 2257999999 9999999999999999999999999988 5
Q ss_pred HHhhCceEEEE
Q psy16366 513 IRETDCELWAL 523 (568)
Q Consensus 513 i~~~~~~i~~l 523 (568)
+..+++.++.+
T Consensus 453 i~p~v~~~~~~ 463 (483)
T 3euj_A 453 ISPERGTTYKL 463 (483)
T ss_dssp CCCSSSEEEEC
T ss_pred hhhccCceEEE
Confidence 55555665543
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-09 Score=111.17 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=54.1
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.|++++++++|++..+|+++||++.+|++++|+|+||||||||+++|+|.. .|.++.+.+.+.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~--~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh--hhCCCEEEEEEEcC
Confidence 467788888887788999999999999999999999999999999999853 23455666666554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-09 Score=103.40 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=45.6
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC-CceEEEEeccc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS-SIDLLYCEQEV 125 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~-~~~i~~~~qe~ 125 (568)
+.+++++++ ++|+++| +.+|+.++|+||||||||||+++|+|... |. .+.+.+.+.++
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPI 64 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSC
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcc
Confidence 456666654 5899999 89999999999999999999999999532 32 56776766554
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.2e-08 Score=93.14 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.7
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.8e-09 Score=107.93 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQI-------------------ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i-------------------~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~ 119 (568)
.|+++|+++.| .+++++++|.+ .+|+++||+|+||||||||+++|+|.....|..+.+.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 57889999998 47999999988 8999999999999999999999999532114455565
Q ss_pred EEec
Q psy16366 120 YCEQ 123 (568)
Q Consensus 120 ~~~q 123 (568)
++..
T Consensus 115 vi~~ 118 (308)
T 1sq5_A 115 LITT 118 (308)
T ss_dssp EEEG
T ss_pred EEec
Confidence 5443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-08 Score=95.40 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=22.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-cC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA-TR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La-G~ 108 (568)
.-..++||++.+|+++||+||||||||||+++|+ |.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3577899999999999999999999999999999 86
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-07 Score=90.67 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=73.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~ 443 (568)
+++|+|+|||||||+.++|+++ |... +..+. ............+..+...+|..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~---------id~d~------------~~~~~~~~~~~~~~~i~~~~g~~ 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPL---------VDADV------------VAREVVAKDSPLLSKIVEHFGAQ 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCE---------EEHHH------------HHHHTTCSSCHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcc---------cchHH------------HHHHHccCChHHHHHHHHHhCHH
Confidence 6899999999999999999983 3211 11110 00000000112233445555542
Q ss_pred CccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc-CceEEEEecchHHH--HhhCceE
Q psy16366 444 SYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY-QGGVILVSHDERLI--RETDCEL 520 (568)
Q Consensus 444 ~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~i--~~~~~~i 520 (568)
. -.|.|+.+|..++..+..+|..+..+ ++.+++.....+.+.+... +.+||+.+|.+... ...|+.+
T Consensus 58 ~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~v 127 (206)
T 1jjv_A 58 I--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRI 127 (206)
T ss_dssp C--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEE
T ss_pred H--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEE
Confidence 1 14678999999999888888654333 3445666666666667654 45788888987554 5678888
Q ss_pred EEEE
Q psy16366 521 WALE 524 (568)
Q Consensus 521 ~~l~ 524 (568)
|++.
T Consensus 128 i~l~ 131 (206)
T 1jjv_A 128 LVVD 131 (206)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.7e-08 Score=90.96 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=25.2
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|+++.+|++++|+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 577889999999999999999999999995
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=101.17 Aligned_cols=113 Identities=17% Similarity=0.221 Sum_probs=71.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
..++++++.+++| +.|+||+|+|||||+++|++.... .+-++.-. .+.. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~~---~~~~-~------------- 88 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISGS---DFVE-L------------- 88 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEGG---GTTT-C-------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCHH---HHHH-H-------------
Confidence 3455666666666 889999999999999999985421 01111100 0000 0
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC----------CCCCCHHHHHHHHHHHHhc
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP----------TNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP----------t~~LD~~~~~~l~~~l~~~ 499 (568)
.. =+|+++.|..+++|....|.||++||+ +++.|.+....+.+++..+
T Consensus 89 --------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 89 --------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp --------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred --------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 00 126788899999999999999999999 3466766555555555432
Q ss_pred -------CceEEEEecchHHHH
Q psy16366 500 -------QGGVILVSHDERLIR 514 (568)
Q Consensus 500 -------~~tvi~vsHd~~~i~ 514 (568)
+..||.+||+.+.+.
T Consensus 147 d~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGSC
T ss_pred hccCCCCCEEEEEecCChhhhc
Confidence 346888999986653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-07 Score=92.27 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+|+.++|+||||||||||++.|++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999999973
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=9e-08 Score=101.61 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=39.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALA 111 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ 111 (568)
.|.++|++++|+++.++++++|+| +|||+||||||||+++|+|...+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCC
Confidence 588999999999999999999998 99999999999999999997543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-08 Score=95.44 Aligned_cols=48 Identities=13% Similarity=0.277 Sum_probs=35.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|+++|++++|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999996 467777 899999999999999999999999999964
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=89.57 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHh
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKN 498 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 498 (568)
...|++++.+|+++++| ||++|...+..+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45688999999999999 999999998888877754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.37 E-value=8.2e-09 Score=115.05 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=30.3
Q ss_pred cceEEeeeEEEeCC--ceeeeeee----------EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 58 VDIKVENFSLSAKG--VELFHNAN----------LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 58 ~~I~i~nls~~~~~--~~ll~~is----------l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..+.++|++..|++ +++|+.++ |++.. +||||||||||||||++|+|..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC
Confidence 35788999999965 34665553 66664 9999999999999999999973
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.5e-08 Score=104.13 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=40.2
Q ss_pred EEeeeEEE---eCC--ceee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLS---AKG--VELF---------HNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~---~~~--~~ll---------~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++++|+ |++ .++| +++||+|.+|+.++|+||||||||||+++|+|.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 45566666 542 3455 999999999999999999999999999999996
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=105.38 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=86.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLG 438 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~ 438 (568)
+..|+.+.|+|||||||||++.++++...+..|. ...+.++ + |...+. ....+.+....+... ..
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~-----g~~ilvl-~-P~r~La--~q~~~~l~~~~~~~v------~~ 170 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE-----NTQVACT-Q-PRRVAA--MSVAQRVAEEMDVKL------GE 170 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG-----TCEEEEE-E-SCHHHH--HHHHHHHHHHTTCCB------TT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC-----CceEEec-C-chHHHH--HHHHHHHHHHhCCch------hh
Confidence 4578999999999999999999887765544420 1122222 1 100000 000011111011000 00
Q ss_pred hCC----CCC-ccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHHHHHHHHHhc---CceEEE-Eec
Q psy16366 439 MFG----LPS-YAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESIDALAEAIKNY---QGGVIL-VSH 508 (568)
Q Consensus 439 ~~~----l~~-~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~~l~~~l~~~---~~tvi~-vsH 508 (568)
.+| +.. ......+..+|+|+.+|..+++.++.++++||+|||.. +||......+...+... ..+|++ +||
T Consensus 171 ~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 171 EVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATL 250 (773)
T ss_dssp TEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCS
T ss_pred eecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 011 000 00112456789999999999999999999999999996 99987766666555443 235666 499
Q ss_pred chHHHHhhCce
Q psy16366 509 DERLIRETDCE 519 (568)
Q Consensus 509 d~~~i~~~~~~ 519 (568)
|.+.+..+.+.
T Consensus 251 ~~~~l~~~~~~ 261 (773)
T 2xau_A 251 DAEKFQRYFND 261 (773)
T ss_dssp CCHHHHHHTTS
T ss_pred cHHHHHHHhcC
Confidence 98877776653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.5e-06 Score=87.59 Aligned_cols=124 Identities=18% Similarity=0.230 Sum_probs=76.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLP 443 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l~ 443 (568)
.+.|.||+|+|||||++.+++.+.+..+ ..+.++.-.. ..+.... ...++..++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~------~~~~~~~-----------~~~l~~~l~~~ 101 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFI------YRNFTAI-----------IGEIARSLNIP 101 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTT------CCSHHHH-----------HHHHHHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCcc------CCCHHHH-----------HHHHHHHhCcc
Confidence 7999999999999999999998876431 1233333211 1222222 22333444432
Q ss_pred CccccCCCCCCCHhHHHHHHHHHHH-ccCCCeEEEeCCCCCCCHHHHHHHHHHHHh------cCceEEEEecchHHHHhh
Q psy16366 444 SYAHTIPIRDLSGGQKARVALAELT-LNNPDILILDEPTNNLDIESIDALAEAIKN------YQGGVILVSHDERLIRET 516 (568)
Q Consensus 444 ~~~~~~~~~~LSgGqkqRv~lA~al-~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~------~~~tvi~vsHd~~~i~~~ 516 (568)
. +....+.++.......... ...|.+|++||+... |......|...+.+ .+.++|++||+..+...+
T Consensus 102 ~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 102 F-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp C-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred C-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 1 2223444443332221111 245889999999876 99888888888854 355799999998766554
Q ss_pred C
Q psy16366 517 D 517 (568)
Q Consensus 517 ~ 517 (568)
.
T Consensus 176 ~ 176 (389)
T 1fnn_A 176 D 176 (389)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-06 Score=91.54 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=31.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHH--cCCcccC--CCceEEEEeccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIA--TRALAIP--SSIDLLYCEQEV 125 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~La--G~~~~ip--~~~~i~~~~qe~ 125 (568)
-|.+|++++|+||||||||||++.|+ +...+.. ....+.|+..+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 68899999999999999999999664 4211100 134566666554
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-07 Score=84.37 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=34.8
Q ss_pred EeeeEEEeCCceee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 62 VENFSLSAKGVELF--HNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 62 i~nls~~~~~~~ll--~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.+. +...+ ++++|.+.+| ..+|+||||||||||+++|.+.
T Consensus 4 i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 4 IEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4444443 22355 7889999999 9999999999999999999874
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.4e-08 Score=102.48 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=35.8
Q ss_pred ceeeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 72 VELFHNANLQIASGR--------------------RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge--------------------~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+.+|+++||+|.+|+ ++||+||||||||||+++|+|..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 468999999999999 99999999999999999999964
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-07 Score=86.86 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.8
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977655
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=90.19 Aligned_cols=127 Identities=20% Similarity=0.276 Sum_probs=74.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC-----------CCccEEEECCCeeEEEEecCCCCCCC--CCCCHHHH---HHHh--
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT-----------PNKGELRKSPRLRIGKFDQHSGEHLF--PDDTPCEY---LMKL-- 425 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~i~~~~q~~~~~l~--~~~~~~e~---l~~~-- 425 (568)
+++|+|+||||||||++.|+|... |+.|.+.... ..+-++. .+. .+. +...+..+ +...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~D-T~G-~i~~lp~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVD-TVG-FIRGIPPQIVDAFFVTLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEE-CCC-BCSSCCGGGHHHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEe-CCC-chhcCCHHHHHHHHHHHHHHHh
Confidence 399999999999999999999876 4556666654 2232221 111 111 11111111 1000
Q ss_pred -------cCC--CH----H---HHHHHHHhCCCCCcc----ccCCCCCCCHhHHHHHHHH----HHH-ccCCCeEEEeCC
Q psy16366 426 -------FNL--PY----E---KSRRQLGMFGLPSYA----HTIPIRDLSGGQKARVALA----ELT-LNNPDILILDEP 480 (568)
Q Consensus 426 -------~~~--~~----~---~~~~~L~~~~l~~~~----~~~~~~~LSgGqkqRv~lA----~al-~~~p~lLlLDEP 480 (568)
+.. .. + .+...|..+++.... .+ ++..+|+|+++++.++ +.+ ..+|++ +|
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 111 11 1 134567777654322 22 4567898988888877 555 444454 89
Q ss_pred CCCCCHHHHHHHHHHHHh
Q psy16366 481 TNNLDIESIDALAEAIKN 498 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~ 498 (568)
||++|...++.|.+.|.+
T Consensus 333 ~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CBTTTTBSHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH
Confidence 999999999988888765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=91.40 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=79.7
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc--CcCCCccEEEECCC-----------eeEEEEecCCCCCCCCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG--ELTPNKGELRKSPR-----------LRIGKFDQHSGEHLFPDD 416 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~l~~~~ 416 (568)
.+|++++++++ .++|+|++|||||||++.|+| .+++..|.+...+. ...+.+.+.+.. .+.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~ 100 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRK-KFTDF 100 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTC-CBSCH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCc-ccCCH
Confidence 57888888888 899999999999999999999 56776775532211 122333322211 11111
Q ss_pred CH-HHHHHH----hcC----CCHHHH--------HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 417 TP-CEYLMK----LFN----LPYEKS--------RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 417 ~~-~e~l~~----~~~----~~~~~~--------~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
.. ...+.. ..+ .+...+ ...+..+++++........+.++.++++..+++..+.+|+++||.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 10 000000 000 000000 0001122333332222223467889999999999999999888874
Q ss_pred CCCCCCHHHH--HHHHHHHHhcC-ceEEEEec
Q psy16366 480 PTNNLDIESI--DALAEAIKNYQ-GGVILVSH 508 (568)
Q Consensus 480 Pt~~LD~~~~--~~l~~~l~~~~-~tvi~vsH 508 (568)
..+..|.... ..+...+...+ .+|+++|.
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLATSDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGGCHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCCHHHHHHHHHhcccCCCEEEEEeC
Confidence 3344554432 22333333333 46777776
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.4e-07 Score=99.60 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=40.3
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
-+++||++..|++++|||+||||||||+++|+|... |.++.+.+...+.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDT 331 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcc
Confidence 468999999999999999999999999999999632 4456777765543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-06 Score=90.12 Aligned_cols=123 Identities=13% Similarity=0.160 Sum_probs=81.7
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHh----c
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKL----F 426 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~----~ 426 (568)
-|+.+.-.+.+|+.+.|.|++|+|||||+.-++..... .| ..+.|+.- +++..+...+. .
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g-------~~Vl~fSl--------Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD-------RGVAVFSL--------EMSAEQLALRALSDLT 98 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT-------CEEEEEES--------SSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEeC--------CCCHHHHHHHHHHHhh
Confidence 45555557899999999999999999999888765432 22 24555442 34554443322 1
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHH-Hhc-CceEE
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI-KNY-QGGVI 504 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l-~~~-~~tvi 504 (568)
+++...++ -+.||.++.+|+..|...+.+++++|.|+|.. .+..+...+..+ .++ +..+|
T Consensus 99 ~v~~~~l~----------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~--si~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 99 SINMHDLE----------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYV--RIEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp CCCHHHHH----------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTC--CHHHHHHHHHHHHHHCTTEEEE
T ss_pred CCCHHHHh----------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCC--cHHHHHHHHHHHHHhcCCCCEE
Confidence 22222211 14799999999999999999999999999864 454554444444 445 55677
Q ss_pred EEe
Q psy16366 505 LVS 507 (568)
Q Consensus 505 ~vs 507 (568)
||-
T Consensus 161 VID 163 (338)
T 4a1f_A 161 FID 163 (338)
T ss_dssp EEE
T ss_pred EEe
Confidence 764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.20 E-value=5.3e-07 Score=93.64 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=33.1
Q ss_pred Cceeeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 71 GVELFHNA-NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 71 ~~~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
|-+.|+.+ ++.|.+|+.++|+||||||||||++.|++..
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33455555 6899999999999999999999999999863
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.3e-06 Score=81.28 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=36.6
Q ss_pred eeeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNA-NLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.|+.+ .--|.+|+.++|+||||||||||+..++... .+.+..+.|+..+.
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 345554 5568999999999999999999977665432 23345677776554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.4e-08 Score=90.93 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=39.6
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
|++..+ +.....+.+++...+|++++|+||||||||||+++|++.+. ..|.+
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 4 NIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 455555 45556677788889999999999999999999999999987 66765
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.9e-07 Score=91.91 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=22.5
Q ss_pred eeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 63 ~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|++++|+++.++++++|+| +|||+||+|||||++.|.|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCC
Confidence 47889999999999999998 99999999999999999985
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.18 E-value=6.4e-07 Score=83.97 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=25.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.+|++++|+||||||||||+++|+|.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999999995
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-08 Score=101.81 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=50.2
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+.+++++++|+...+|+++ +. .+|+.++|+|||||||||||++|+|... |..+.+.+.+..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccch
Confidence 45677888777666788888 53 8899999999999999999999999532 34567777776553
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-07 Score=88.77 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=36.2
Q ss_pred eeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 63 ENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 63 ~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|+++.+++....+.+++...+|+.++|+|+||||||||+++|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46677777777778888888999999999999999999999999853
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.6e-07 Score=84.13 Aligned_cols=37 Identities=32% Similarity=0.178 Sum_probs=24.0
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...++|+||++.+|.+++|+|++||||||+++.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999974
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.6e-07 Score=85.54 Aligned_cols=31 Identities=26% Similarity=0.542 Sum_probs=24.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.-...+|+.++|+||||||||||+++|+|..
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999999999963
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.7e-07 Score=100.40 Aligned_cols=47 Identities=19% Similarity=0.225 Sum_probs=39.8
Q ss_pred ceEEeeeEEEe---CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 59 DIKVENFSLSA---KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 59 ~I~i~nls~~~---~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++..... ++..+++|+||+ |++++|+||||||||||||+|+|.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 46777765443 456789999999 999999999999999999999985
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=81.69 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=31.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~ 392 (568)
.|.+|+++.|.||||||||||+..+++...+..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 47899999999999999999999999988765554
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.9e-07 Score=84.50 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=31.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
..+|+++||+||||||||||+++|+|... + .+.++.|+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--RVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--GEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--CeEEEecCcc
Confidence 46899999999999999999999999522 1 4667777653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-06 Score=83.37 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 349 KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 349 ~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=8.1e-07 Score=83.03 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCC-CccEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTP-NKGEL 393 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p-~~G~i 393 (568)
.+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998864 44544
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.8e-07 Score=84.42 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=25.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..+|+++||+||||||||||+++|+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999963
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.10 E-value=5e-07 Score=89.37 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=33.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHh---cCcCCCccEEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLK---GELTPNKGELR 394 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~---G~~~p~~G~i~ 394 (568)
.+|++++|+||||||||||+++|+ |+..|+.|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999876
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-06 Score=83.70 Aligned_cols=26 Identities=42% Similarity=0.648 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+.++|+||||||||||+++|+|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999999985
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.9e-06 Score=81.57 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=25.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++|.+|++++|+||||||||||+++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 467899999999999999999999999964
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-06 Score=92.05 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=37.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
|+++|+ .+| ++. . ++++.+|++++|+|||||||||||++|++++.|.++
T Consensus 7 l~~~~~-~~~-~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 7 LELSNF-KSY-RGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEESC-SSC-CSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEeCE-EEE-CCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 677888 677 332 1 255678999999999999999999999999888654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-06 Score=81.73 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
|++++|+||||||||||+++|+|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999999853
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-07 Score=92.15 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=35.2
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..|.++|++..++. +|++.+ ++++|+|||||||||||++|+|..
T Consensus 8 ~~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 8 RSLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp EEEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred eEEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhccc
Confidence 45788888665432 566666 899999999999999999999964
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-06 Score=80.97 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=24.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++-+-.++..+|++++|+|+||||||||+++|++.
T Consensus 17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 334344466778999999999999999999999985
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-06 Score=81.58 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
+...+|++++|+||||||||||+++|+|.+ |.+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i 58 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFA 58 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEE
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEE
Confidence 556789999999999999999999999976 65543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.9e-06 Score=88.27 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=37.6
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.++++++. +...+++++|++.+| +++|+||||||||||+.+|.+
T Consensus 5 ~i~~L~l~--~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTL--NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEE--SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEe--CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 46666665 345678999999999 999999999999999999986
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-06 Score=88.29 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=71.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..+..+.|.||+|+|||||++.+++.+.+..|. ...+.++.-... .+.... ...++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~~~------~~~~~~-----------~~~i~~~ 100 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTRQI------DTPYRV-----------LADLLES 100 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHHHH------CSHHHH-----------HHHHTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECCCC------CCHHHH-----------HHHHHHH
Confidence 357789999999999999999999987654321 112223321110 012221 1223333
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCC---HHHHHHHHHHHHhc---CceEEEEecchH
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLD---IESIDALAEAIKNY---QGGVILVSHDER 511 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD---~~~~~~l~~~l~~~---~~tvi~vsHd~~ 511 (568)
++... +....+..+...... .++ ...|.+|++||+....+ ......+.+.+..+ +.++|++||+..
T Consensus 101 l~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 101 LDVKV-----PFTGLSIAELYRRLV-KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp TSCCC-----CSSSCCHHHHHHHHH-HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred hCCCC-----CCCCCCHHHHHHHHH-HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 33321 112344444222222 222 23488999999987652 34455666666432 457999999886
Q ss_pred HHHhh
Q psy16366 512 LIRET 516 (568)
Q Consensus 512 ~i~~~ 516 (568)
+...+
T Consensus 175 ~~~~~ 179 (386)
T 2qby_A 175 FVDLL 179 (386)
T ss_dssp GGGGC
T ss_pred hHhhh
Confidence 54433
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=9.3e-07 Score=92.25 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=32.3
Q ss_pred eeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 75 FHNANLQIAS--GRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 75 l~~isl~i~~--Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
...++++|.+ |++++|+||||||||||+++|+|..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4668999999 9999999999999999999999963
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.7e-06 Score=85.51 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
+|++++|+||||||||||+++|+|... |.++.+.+.+.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCC
Confidence 699999999999999999999999643 45667777776653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=3.9e-06 Score=78.32 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|+.++|+||||||||||+++|++.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999999985
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-07 Score=94.66 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=75.8
Q ss_pred eEEEeCCCceeeeeeeEEEeCCC------EEEEECCCCChHHHHHHHHhcCcC--CCccEEEECCCeeEEEEecCCCCCC
Q psy16366 341 VTFGYPGGKVLLEKVNFGLDMES------RVALVGPNGIGKSTFLNLLKGELT--PNKGELRKSPRLRIGKFDQHSGEHL 412 (568)
Q Consensus 341 v~~~y~~~~~il~~vs~~i~~Ge------~~~ivG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~~~i~~~~q~~~~~l 412 (568)
+++.| ++...+++++..+..+. ++||+||||||||||+++|++++. |+.|. ++++.++.. .
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~--------v~~i~~D~f--~ 134 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN--------VEVITTDGF--L 134 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC--------EEEEEGGGG--B
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe--------EEEEeeccc--c
Confidence 44445 45567777777777766 899999999999999999999987 44454 456666542 1
Q ss_pred CCCCCHHHH--HHHhcC----CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH
Q psy16366 413 FPDDTPCEY--LMKLFN----LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI 486 (568)
Q Consensus 413 ~~~~~~~e~--l~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~ 486 (568)
.+. ...+. +...++ .+.....+.|..+.-....-..|. +|.+..+|+..+...+..|+|+|++-|..-.|.
T Consensus 135 ~~~-~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~--yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 135 YSN-AKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPV--YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp CCH-HHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEE--EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cch-hhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccch--hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 111 11110 001111 123334444444322110111232 344444444333345678999999999887765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-07 Score=93.54 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=48.2
Q ss_pred eeEEEeCCceeeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 64 NFSLSAKGVELFHNANLQIASGR------RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 64 nls~~~~~~~ll~~isl~i~~Ge------~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+++.|++...|.+++..+..+. ++||+||||||||||+++|++.....|....+.++.++..
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 44555667778888888887776 8999999999999999999986433455566667776653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-05 Score=80.35 Aligned_cols=135 Identities=16% Similarity=0.199 Sum_probs=72.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC--cCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE--LTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|++|+++.|.||+|||||||+..++.. .++..|. ....+.|+.-+. .+....+.+.. ...+.+.+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg----~~~~vlyi~~E~---~~~~~~l~~~~-~~~g~~~~~--- 186 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY----PGGKIIFIDTEN---TFRPDRLRDIA-DRFNVDHDA--- 186 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB----CCCEEEEEESSS---CCCHHHHHHHH-HHTTCCHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC----CCCeEEEEECCC---CCCHHHHHHHH-HHcCCCHHH---
Confidence 4679999999999999999999988874 3322111 112455655432 11111111121 223343322
Q ss_pred HHHhCCCCCccccCCCCCCCHhHH-HHHHHHHHHc----cCCCeEEEeCCCCCCCHH--------H----HHH----HHH
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQK-ARVALAELTL----NNPDILILDEPTNNLDIE--------S----IDA----LAE 494 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqk-qRv~lA~al~----~~p~lLlLDEPt~~LD~~--------~----~~~----l~~ 494 (568)
+++.+-+ . ...++.+. +.+..++.++ .+++++|+|+.++..... . ... |..
T Consensus 187 ~l~~l~~----~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 187 VLDNVLY----A----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp HHHTEEE----E----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred HHhceeE----e----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 2332211 0 11233332 3444445554 679999999999876442 1 122 233
Q ss_pred HHHhcCceEEEEecchH
Q psy16366 495 AIKNYQGGVILVSHDER 511 (568)
Q Consensus 495 ~l~~~~~tvi~vsHd~~ 511 (568)
+.++++.+||+++|-..
T Consensus 259 la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 259 ISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHTCEEEEEECC--
T ss_pred HHHHhCCEEEEEeecee
Confidence 33456789999999654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-06 Score=79.51 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=27.4
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
.+|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999877
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-06 Score=95.08 Aligned_cols=37 Identities=27% Similarity=0.182 Sum_probs=34.4
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++++++.+.+|+.++|+|||||||||||++|+|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3578899999999999999999999999999999995
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.90 E-value=1.7e-07 Score=95.26 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcC-CCccEEEECCCeeEEEEecCCCCCCCCCC---C--HHHHHHHhcCCCHHHHHH
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELT-PNKGELRKSPRLRIGKFDQHSGEHLFPDD---T--PCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~i~~~~q~~~~~l~~~~---~--~~e~l~~~~~~~~~~~~~ 435 (568)
+.+++|+|++|+|||||++.|+|... +.++..........|++.++.....+.++ . ....+...+.. .+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~---~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNK---AASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTC---CTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHH---HHHH
Confidence 44899999999999999999999742 11111111122335666554321111111 1 00000000000 0000
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHh----cCc--eEEEE
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDIES-IDALAEAIKN----YQG--GVILV 506 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~~~-~~~l~~~l~~----~~~--tvi~v 506 (568)
.+...++.-.... ...+|+|++ .+++.+. ..|.++++ |.+|... ...+.+.+.+ ++. .+.++
T Consensus 85 ~l~~~D~vl~Vvd--~~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVE--GTRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEE--TTCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEe--CCCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 1111111111111 123899886 4556665 67999998 8899765 4444444432 332 45566
Q ss_pred ecchHHHHhhCc
Q psy16366 507 SHDERLIRETDC 518 (568)
Q Consensus 507 sHd~~~i~~~~~ 518 (568)
+|+-.-+..+.+
T Consensus 156 A~~g~~v~~l~~ 167 (301)
T 1ega_A 156 AETGLNVDTIAA 167 (301)
T ss_dssp TTTTTTHHHHHH
T ss_pred CCCCCCHHHHHH
Confidence 676655544433
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=1e-06 Score=88.31 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.5
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+....+|+++++++..| ++|+||||||||||+++|+|.
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 44567899999999999 999999999999999999995
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-07 Score=90.07 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=44.7
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
.+++++.+.| +...+++++++.+++| ++|+||||||||||+++|++.+. .|.+..
T Consensus 26 ~~l~~l~~~~-~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~ 80 (254)
T 1ixz_A 26 EELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITA 80 (254)
T ss_dssp HHHHHHHHHH-HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEe
Confidence 3456666667 4567899999999999 99999999999999999999875 555543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-07 Score=89.73 Aligned_cols=47 Identities=34% Similarity=0.452 Sum_probs=41.3
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++++..|+...+|+++++++.+| ++|+||||||||||+++|++.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34667777777778999999999999 999999999999999999985
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-07 Score=94.82 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=43.2
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASG-------RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~G-------e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+..++|+..++...+++++++.|..| +.++|+||||+|||||+++|+|.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667777788888999999999877 89999999999999999999985
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.6e-06 Score=79.27 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=26.6
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999999865
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.4e-06 Score=80.20 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=31.9
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
..+|.+++|+|+||||||||+++|++.+++..|.|.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~ 54 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVC 54 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEE
Confidence 357889999999999999999999999988777764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.9e-06 Score=85.50 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
.+|++++|+||||||||||++.|+|... |.++.+.+.+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeeccc
Confidence 6899999999999999999999999642 45667777776653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.8e-05 Score=81.64 Aligned_cols=111 Identities=16% Similarity=0.171 Sum_probs=66.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
++.+++++|||||||||++..|++.+.+..+.| .++.-+.. .....+. ...+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV--------llv~~D~~-----r~~a~eq-----------L~~~~~~~ 151 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKV--------GLVAADVY-----RPAAYDQ-----------LLQLGNQI 151 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCE--------EEEEECCS-----CHHHHHH-----------HHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE--------EEEecCcc-----chhHHHH-----------HHHHHHhc
Confidence 467899999999999999999999988765543 34443321 0011222 22233344
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC-CC--CCHHHHHHHHHHHHh
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT-NN--LDIESIDALAEAIKN 498 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt-~~--LD~~~~~~l~~~l~~ 498 (568)
+++-+... ...+.-.-.+-+++.+...+++++|+|+|. .+ .|......+..++..
T Consensus 152 gv~~~~~~---~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 152 GVQVYGEP---NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp TCCEECCT---TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred CCceeecc---ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 54322111 112222223445666666789999999997 45 777766666655443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.83 E-value=5.3e-07 Score=90.25 Aligned_cols=46 Identities=35% Similarity=0.481 Sum_probs=40.2
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++++...|+...+|+++++++.+| ++|+||||||||||+++|++.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3556666677778899999999999 999999999999999999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-06 Score=83.30 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++||||||||||||+++|+|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.81 E-value=6.2e-06 Score=77.22 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=26.4
Q ss_pred cCCeEEEEeCC-HHHHHhhhceeeEEcCCeeeE
Q psy16366 210 WKKTLLVVSHD-QSFLNNICTDIIHLDMKKLFY 241 (568)
Q Consensus 210 ~~~tvlvVSHd-~~~l~~v~d~ii~L~~g~l~~ 241 (568)
.+.++|.+||. ++.+..+|++|+ ++|++..
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred CccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 35789999998 999999999999 9999875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.5e-06 Score=78.35 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|++.+|+.++|+||||+|||||+++|++..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566779999999999999999999999853
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.81 E-value=2.5e-06 Score=89.34 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=34.3
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+++++++.+|+.++|+||||||||||+++|+|.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999999999999999999983
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6.3e-06 Score=80.12 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=29.1
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRK 395 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~ 395 (568)
+..+|++++|+|+||||||||+++|+|. .|+|..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~ 49 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICL 49 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEE
Confidence 4468999999999999999999999997 566543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.9e-06 Score=80.64 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
.+|++++|+||||||||||+++|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999999999
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.79 E-value=3.3e-06 Score=86.53 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=37.9
Q ss_pred eeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 352 LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 352 l~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVl 137 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3678888889999999999999999999999999998877664
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=80.54 Aligned_cols=129 Identities=12% Similarity=0.216 Sum_probs=80.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
+-|+.+.-.+.+|+.+.|.|+.|+|||||+..++...-- .| ..+.|+.- +++..+...+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~sl--------E~s~~~l~~R~~--- 116 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSL--------EMGKKENIKRLI--- 116 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEES--------SSCHHHHHHHHH---
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEEC--------CCCHHHHHHHHH---
Confidence 346666656899999999999999999998877643221 22 24555542 244444332211
Q ss_pred HHHHHHHHHhCCCCCccccCCCCC--CCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHH-HHHHhcCce--EE
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRD--LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA-EAIKNYQGG--VI 504 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~--LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~l~~~~~t--vi 504 (568)
.....+.+.... -.. ||.++++|+..|...+.++++++.|+|. +++..+...+ .+..+.+.. +|
T Consensus 117 -----~~~~~i~~~~l~----~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lV 185 (315)
T 3bh0_A 117 -----VTAGSINAQKIK----AARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIV 185 (315)
T ss_dssp -----HHHTTCCHHHHH----SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEE
T ss_pred -----HHHcCCCHHHHh----cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEE
Confidence 111111111111 123 9999999999999999899999999986 4454444333 333445656 77
Q ss_pred EEec
Q psy16366 505 LVSH 508 (568)
Q Consensus 505 ~vsH 508 (568)
+|-|
T Consensus 186 VID~ 189 (315)
T 3bh0_A 186 MIDY 189 (315)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7755
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=9.5e-06 Score=86.79 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=31.1
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHh---cCceEEEEecch
Q psy16366 470 NNPDILILDEPTNNLDI-ESIDALAEAIKN---YQGGVILVSHDE 510 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~-~~~~~l~~~l~~---~~~tvi~vsHd~ 510 (568)
.+|++|++||+..-.+. .....+...++. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999877764 566777777654 356789999973
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=78.77 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIA---TR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~La---G~ 108 (568)
.+++++|+||||||||||+++|+ |.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999999 84
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.9e-06 Score=88.14 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=47.6
Q ss_pred eEEEEeeEEEeCCCceeee--------------eeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 335 VLGLHDVTFGYPGGKVLLE--------------KVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~--------------~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-+.++||++.||..+..++ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3568999999987788899 899999999999999999999999999998865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.75 E-value=9.3e-06 Score=74.64 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
.|.+++|+||||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999998653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0001 Score=71.54 Aligned_cols=117 Identities=20% Similarity=0.270 Sum_probs=62.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEE--ECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELR--KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 441 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~--~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~ 441 (568)
+++|+|++|+|||||++.|+|...+..+... .........+.-+. ..+ ..++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i-------------------------~liD 84 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-TEL-------------------------VVVD 84 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT-EEE-------------------------EEEE
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC-ceE-------------------------EEEE
Confidence 4899999999999999999998776665431 11111111111000 000 0111
Q ss_pred CCCccccCCCCCCCHhHHHH--HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC-----ceEEEEec-ch
Q psy16366 442 LPSYAHTIPIRDLSGGQKAR--VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ-----GGVILVSH-DE 510 (568)
Q Consensus 442 l~~~~~~~~~~~LSgGqkqR--v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-----~tvi~vsH-d~ 510 (568)
.++... ...|+.+.++ ..........|+++|+..+.+.++......+..++..++ .+||++|| |.
T Consensus 85 TpG~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 85 TPGIFD----TEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp CCSCC---------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCccC----CCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 111111 1233333222 112222345789999999998888877666666654332 47888999 54
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6.3e-05 Score=77.01 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=73.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc-CCC-ccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL-TPN-KGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~-~p~-~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.|++|+++.|.||+|+|||||+..++... .|. .|- ...++.|+.-+. .+....+.+.. ...+.+.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg----~~~~vlyi~~e~---~~~~~~l~~~~-~~~g~~~~~--- 171 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG----LSGKAVYIDTEG---TFRWERIENMA-KALGLDIDN--- 171 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC----CSCEEEEEESSS---CCCHHHHHHHH-HHTTCCHHH---
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC----CCCeEEEEECCC---CCCHHHHHHHH-HHhCCCHHH---
Confidence 57899999999999999999998887642 231 110 012345554332 11111111121 223333322
Q ss_pred HHHhCCCCCccccCCCCCCCHhH-HHHHHHHHHHc---cCCCeEEEeCCCCCCCHH--------H----HHH----HHHH
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQ-KARVALAELTL---NNPDILILDEPTNNLDIE--------S----IDA----LAEA 495 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGq-kqRv~lA~al~---~~p~lLlLDEPt~~LD~~--------~----~~~----l~~~ 495 (568)
+++.+- . ....+..+ .+.+..++.++ .+|+++|+|+.++-.... . ... |..+
T Consensus 172 ~~~~l~----~----~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~l 243 (324)
T 2z43_A 172 VMNNIY----Y----IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRL 243 (324)
T ss_dssp HHHTEE----E----EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HhccEE----E----EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHH
Confidence 222111 0 11233332 34566666666 679999999999865421 1 122 2333
Q ss_pred HHhcCceEEEEecchH
Q psy16366 496 IKNYQGGVILVSHDER 511 (568)
Q Consensus 496 l~~~~~tvi~vsHd~~ 511 (568)
.++++.+||+++|-..
T Consensus 244 a~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 244 AEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHTCEEEEEEEC--
T ss_pred HHHhCCEEEEEcceee
Confidence 3456789999988553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=73.39 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
++..+.|.||+|+|||||++.|++.... . .-.+. .. .+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---~--------~~~i~--~~-~l~--------------------------- 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---T--------FLNIS--AA-SLT--------------------------- 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---E--------EEEEE--ST-TTS---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---C--------eEEee--HH-HHh---------------------------
Confidence 3567899999999999999999986521 1 11111 00 000
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCH----------HHHHHHHHHHHhcC-------ceE
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDI----------ESIDALAEAIKNYQ-------GGV 503 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~----------~~~~~l~~~l~~~~-------~tv 503 (568)
.. ..-++++..+..+..+...+|.+|++||+.+-++. .....+...+.... ..|
T Consensus 92 ------~~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 92 ------SK---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ------SS---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred ------hc---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 00 01246788888888888899999999999876553 22344555555542 246
Q ss_pred EEEecchH
Q psy16366 504 ILVSHDER 511 (568)
Q Consensus 504 i~vsHd~~ 511 (568)
|.+|++.+
T Consensus 163 i~~tn~~~ 170 (297)
T 3b9p_A 163 LAATNRPQ 170 (297)
T ss_dssp EEEESCGG
T ss_pred EeecCChh
Confidence 77788653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=85.10 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=32.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-++++|+|..|+.++|||+||||||||+++|+|.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999986
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=1.7e-05 Score=89.19 Aligned_cols=134 Identities=17% Similarity=0.119 Sum_probs=69.7
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCC--CccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKS 433 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~ 433 (568)
++.+.++..++|+|+||+|||||++.|++...+ ..|+| ... . ...+....+.- .......+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g---------~----~~~d~~~~e~~-~giti~~~~~ 67 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEG---------T----TTTDYTPEAKL-HRTTVRTGVA 67 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGT---------C----CSSCCSHHHHH-TTSCCSCEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCC---------c----ccccCCHHHHh-cCCeEEecce
Confidence 456788999999999999999999999976544 45554 110 0 11111121110 0000000000
Q ss_pred HHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHH
Q psy16366 434 RRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERL 512 (568)
Q Consensus 434 ~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~ 512 (568)
.+..-+..-.....| +.-. -.......+-..++-++++| |+++++..+... +..+...+..+|++.|.++.
T Consensus 68 --~~~~~~~~~nliDTp-G~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~-~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 68 --PLLFRGHRVFLLDAP-GYGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTERA-WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp --EEEETTEEEEEEECC-CSGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHH-HHHHHHTTCCEEEEEECGGG
T ss_pred --EEeeCCEEEEEEeCC-Cccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHHH-HHHHHHccCCEEEEecCCch
Confidence 000000000000001 1100 01223333446788899999 999999887744 44555567888999998875
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.7e-05 Score=75.82 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+.++|+||||||||||++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 47999999999999999999999986
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.69 E-value=1.5e-05 Score=73.22 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|.+++|+|+||||||||+++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999985
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=6.5e-06 Score=86.13 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=36.3
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+|++++ +.+|+.++|+||||||||||+++|+|...+. ..+.+...+..+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~ 175 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPI 175 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSC
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccH
Confidence 455544 7899999999999999999999999953221 145666666543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.9e-05 Score=80.10 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=26.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
++..|++++|+||||||||||+++|+|...
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 345699999999999999999999999743
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=1.7e-05 Score=73.14 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35899999999999999999999974
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=97.65 E-value=2.2e-05 Score=84.36 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=42.3
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|-+.|+++..-+.+|+.+.|.|++|+|||||+..|++...+ ..+..++|+..|.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-KTNENVAIFSLEM 242 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-HSSCCEEEEESSS
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCC
Confidence 34568888878999999999999999999999999975321 1234678877665
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=77.54 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+..+|++++|+|+||||||||+++|+|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468999999999999999999999984
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2e-05 Score=74.88 Aligned_cols=30 Identities=20% Similarity=0.213 Sum_probs=27.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++.+|.+++|+|++|||||||+++|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999999999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.64 E-value=3e-05 Score=80.41 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+|++++|+||||+|||||+++|+|...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 799999999999999999999999743
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=73.33 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+|++++|+|+||||||||+++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 368899999999999999999999865
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=72.04 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
+|+.++|+||||+|||||+++|++... +.+..+.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~--~~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL--EAGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH--TTTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEcH
Confidence 899999999999999999999999532 23334555443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.64 E-value=5.6e-07 Score=93.12 Aligned_cols=53 Identities=23% Similarity=0.181 Sum_probs=43.8
Q ss_pred eeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 340 DVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 340 ~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
++.+.| +...+++++++.+..|.+++|+|+||+|||||++.|++.+.+..|.+
T Consensus 35 ~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v 87 (341)
T 2p67_A 35 HPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87 (341)
T ss_dssp CHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred Cchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 333445 34567889999999999999999999999999999999988876654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.6e-05 Score=70.66 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=24.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+.++.+.+| +.+|+||||||||||+.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3444555544 899999999999999999874
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.3e-06 Score=89.06 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=33.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc-EEE
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKG-ELR 394 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G-~i~ 394 (568)
.+.+|++++|+|+||||||||+++|+|.+.|+.| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 4679999999999999999999999999999886 553
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=3.5e-05 Score=69.79 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.0
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.++.+.+| ..+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555555 89999999999999999997
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.55 E-value=1.1e-05 Score=83.72 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=44.2
Q ss_pred ceEEeeeEEEeCC-ceeee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 59 DIKVENFSLSAKG-VELFH--------------NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 59 ~I~i~nls~~~~~-~~ll~--------------~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++|+++.|+. +..|+ |+.+.|.+|++++|+||+|||||||++.|++
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 5678889999865 56888 8999999999999999999999999999986
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.55 E-value=6.5e-06 Score=83.68 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++.+|++++|+||||+|||||+++|+|..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 345579999999999999999999999964
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.54 E-value=3.4e-05 Score=73.28 Aligned_cols=29 Identities=17% Similarity=0.421 Sum_probs=24.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+....|+.++|+||||||||||++.|++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34457999999999999999999999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=1.4e-05 Score=76.81 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=28.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc---CCCccEEEE
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL---TPNKGELRK 395 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 395 (568)
+.+++|+||+||||||++++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 667776643
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0006 Score=61.82 Aligned_cols=24 Identities=46% Similarity=0.732 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=1.3e-05 Score=81.21 Aligned_cols=60 Identities=22% Similarity=0.167 Sum_probs=47.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.++++++.|++.. ++++|+ +|++++++|+||+||||+++.|++... +.+..+.++..+.
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCS
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCc
Confidence 55677777776543 788888 899999999999999999999998532 3456777776654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.1e-05 Score=75.88 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
..|+.++|+||||||||||+++|+ ..
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 469999999999999999999999 64
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.44 E-value=4e-05 Score=74.54 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=30.1
Q ss_pred eeeeeEEEe---CCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 352 LEKVNFGLD---MESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 352 l~~vs~~i~---~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 556666665 8999999999999999999999999887 5544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.43 E-value=4.5e-05 Score=72.33 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=31.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..+|.+++|+|+||||||||++.|++... +.++.+.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccCc
Confidence 46789999999999999999999998521 2344555555554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=3.9e-05 Score=72.83 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.+|..++|+|++|||||||++.|++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999999985
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00046 Score=71.56 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=66.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.+.+|+++.|.|++|+|||||...++...... | .++.|+.-... +. . ...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g-------~~vlyid~E~s--~~----~--~~a-------------- 108 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-G-------KTCAFIDAEHA--LD----P--IYA-------------- 108 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-T-------CCEEEEESSCC--CC----H--HHH--------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-C-------CeEEEEeCCCC--cc----H--HHH--------------
Confidence 47899999999999999999998877644322 2 13455554321 11 1 111
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHc--cCCCeEEEeCCCCCCCH-H-----------H--------HHHHHHH
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTL--NNPDILILDEPTNNLDI-E-----------S--------IDALAEA 495 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~--~~p~lLlLDEPt~~LD~-~-----------~--------~~~l~~~ 495 (568)
..+|+... ...+..-+.++ +-+.+++.++ .+++++|+|.++.-... + . ...|..+
T Consensus 109 ~~~g~~~~--~l~i~~~~~~e-~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~ 185 (356)
T 1u94_A 109 RKLGVDID--NLLCSQPDTGE-QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 185 (356)
T ss_dssp HHTTCCGG--GCEEECCSSHH-HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCChh--heeeeCCCCHH-HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 12232210 00011111222 3345555553 67999999999987631 1 0 1123333
Q ss_pred HHhcCceEEEEecch
Q psy16366 496 IKNYQGGVILVSHDE 510 (568)
Q Consensus 496 l~~~~~tvi~vsHd~ 510 (568)
+++++.+||+++|-.
T Consensus 186 a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 186 LKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHTCEEEEEEC--
T ss_pred HHHhCCEEEEEeccc
Confidence 456788999999854
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.36 E-value=3.7e-05 Score=78.64 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=39.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+.+++|++.+|++++|+|+||+||||++..|++... +.+..++++..++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCC
Confidence 367888899999999999999999999999998532 3456777766554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=69.94 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+.++..+.|.||+|+|||||+++|++.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34667889999999999999999999875
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=9.4e-05 Score=70.97 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.+++|+|++||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999984
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=5.9e-05 Score=78.09 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.+.+++|+|++|||||||++.|+|.+.|..|.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~ 106 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLS 106 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEE
Confidence 3557999999999999999999998888777653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=5.1e-05 Score=70.27 Aligned_cols=31 Identities=32% Similarity=0.296 Sum_probs=27.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.+|.+++|+|++||||||++++|++.+.| .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.31 E-value=5.1e-05 Score=70.44 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++|||+||||||||+++|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999995
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=69.26 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++||+|+|||||||++++|++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999983
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=69.56 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=23.1
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
+.++.+.+ .+.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 44455554 489999999999999999875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=7.8e-05 Score=70.19 Aligned_cols=43 Identities=23% Similarity=0.447 Sum_probs=31.6
Q ss_pred EEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 342 TFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 342 ~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++.|++-..+++++||..+.. .++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 455655557889999887776 5899999999999999999873
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00012 Score=68.38 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|+|+||||||||++.|+|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999754
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00067 Score=73.47 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=28.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+++.+..|.+++|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4678888999999999999999999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00014 Score=67.37 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|.+++|+|++||||||+++.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999999984
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00016 Score=68.83 Aligned_cols=29 Identities=31% Similarity=0.556 Sum_probs=24.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.++.+.+| ..+|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566554 89999999999999999996
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.23 E-value=6.1e-06 Score=85.30 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=40.4
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.++.+.+|+...+++++++.+..|.+++|+|+||+|||||++.|++.
T Consensus 32 e~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455556666788899999999999999999999999999999974
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.22 E-value=7.7e-05 Score=75.77 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=36.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 78 isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+++...+|++++|+|+|||||||+++.|++... +.+..+.++..+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~ 142 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADT 142 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECT
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcccc
Confidence 455667899999999999999999999998532 3455677766553
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00012 Score=69.04 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=67.89 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.3
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 77 NANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 77 ~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++|++...|..++|+|++||||||+++.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999963
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00014 Score=70.64 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=25.1
Q ss_pred eeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 75 FHNANLQIA---SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 75 l~~isl~i~---~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|.++||++. .|.++.|.|++||||||+++.|+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 455566665 8999999999999999999999975
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=67.95 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=3.3e-05 Score=80.44 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=37.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~ 392 (568)
.+.+.+++..| +.+.++++++|.| +|+|++|+|||||++.|.|...+..|.
T Consensus 17 ~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 57788888888 5677899999976 999999999999999998875554443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.18 E-value=5.2e-05 Score=83.22 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=44.1
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.++++...| ....++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|.
T Consensus 85 G~~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~ 140 (543)
T 3m6a_A 85 GLEKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140 (543)
T ss_dssp SCHHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC
T ss_pred cHHHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE
Confidence 345555555 3445677888887 8999999999999999999999999987666553
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.15 E-value=7.9e-05 Score=81.69 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=26.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+.+|+.++|+|+||||||||+++|+|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 57799999999999999999999999963
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0006 Score=68.51 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=57.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCCC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGL 442 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~l 442 (568)
..+.|+||+|+|||||+++|++.+.+..|.+. ++.-. .+... .....+ +|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~--------~~~~~---~~~~~-~~~~~l-----------------~g~ 98 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI--------RIDMT---EYMEK-HAVSRL-----------------IGA 98 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE--------EEEGG---GCCST-THHHHH-----------------HCC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE--------Eeecc---ccccc-ccHHHh-----------------cCC
Confidence 36889999999999999999999877666432 11111 11111 111111 111
Q ss_pred CCccccCCCCCCCHhHHHHHHHHHHHccCC-CeEEEeCCCCCCCHHHHHHHHHHHHhc
Q psy16366 443 PSYAHTIPIRDLSGGQKARVALAELTLNNP-DILILDEPTNNLDIESIDALAEAIKNY 499 (568)
Q Consensus 443 ~~~~~~~~~~~LSgGqkqRv~lA~al~~~p-~lLlLDEPt~~LD~~~~~~l~~~l~~~ 499 (568)
.. ...|- .++-.+..++...| .+|++||. ..|++.....|.+.|.+.
T Consensus 99 ~~--------~~~~~-~~~~~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~ 146 (311)
T 4fcw_A 99 PP--------GYVGY-EEGGQLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDG 146 (311)
T ss_dssp CT--------TSTTT-TTCCHHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHS
T ss_pred CC--------ccccc-cccchHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcC
Confidence 10 00010 00012344444444 79999998 678999999999999764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0012 Score=70.55 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=80.5
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCC
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP 429 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~ 429 (568)
+-|+.+.-.+.+|+.+.|.|++|+|||||+..++.......| ..+.|+.- +++..+...+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~sl--------E~~~~~l~~R~---- 248 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYSL--------EMPAAQLTLRM---- 248 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEES--------SSCHHHHHHHH----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEEC--------CCCHHHHHHHH----
Confidence 346666656899999999999999999999888765432222 23455432 23443332211
Q ss_pred HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHH-HHHHHhcCceEEEEec
Q psy16366 430 YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL-AEAIKNYQGGVILVSH 508 (568)
Q Consensus 430 ~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l-~~~l~~~~~tvi~vsH 508 (568)
.....+++.... .-+.||..+.+|+.-|...+...++++.|+|. +++..+... ..+..+.+..+|+|-+
T Consensus 249 ------~~~~~~i~~~~l--~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 249 ------MCSEARIDMNRV--RLGQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp ------HHHHTTCCTTTC--CGGGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred ------HHHHcCCCHHHH--hCCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 112234432211 12469999999998888777788899998774 445444433 3344455666776643
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00017 Score=68.01 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.11 E-value=9.4e-05 Score=80.70 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=31.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
..+++++|++.+| ..+|+|+||||||||+.+|.+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3678899999999 999999999999999999964
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.09 E-value=4.8e-05 Score=84.60 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=40.5
Q ss_pred eeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 64 NFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 64 nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++--++...+++++++.+..|+.++|+||||||||||+++|++..
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3444467778999999999999999999999999999999999963
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00016 Score=75.91 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++..|.++||||+||+|||||+++|+|..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~ 44 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSV 44 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44689999999999999999999999943
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0001 Score=70.35 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=29.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 457889999999999999999999999887777
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00022 Score=72.82 Aligned_cols=23 Identities=52% Similarity=0.550 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++|+|+||||||||+++|.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47999999999999999999986
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00022 Score=67.63 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+|..++|+||+|||||||++.|+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999874
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00023 Score=66.30 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=26.4
Q ss_pred eeeEEEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 354 KVNFGLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 354 ~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++|+...+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00067 Score=68.96 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=23.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568999999999999999999876543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00017 Score=76.53 Aligned_cols=40 Identities=20% Similarity=0.012 Sum_probs=35.4
Q ss_pred eeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 353 EKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 353 ~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
++++|+ ++.+++|+|+|||||||++..|++.+.+..|.|.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vl 130 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPL 130 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 567777 8999999999999999999999999998877654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=66.75 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+++|+++.|.||+|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987774
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.03 E-value=3e-05 Score=84.01 Aligned_cols=46 Identities=35% Similarity=0.481 Sum_probs=38.8
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++++...+.....|+++++.+..| ++|+||||+|||||+++|++.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 3555555555667899999999999 999999999999999999985
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00056 Score=65.50 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMF 440 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~ 440 (568)
.+..+.|.||+|+|||||++.++..+... ...+.|+.-.......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~--------~~~~~~~~~~~~~~~~--------------------------- 95 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL--------ERRSFYIPLGIHASIS--------------------------- 95 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEEGGGGGGSC---------------------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEHHHHHHHH---------------------------
Q ss_pred CCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHHH--HHHHHHHHHhc---Cce-EEEEecc
Q psy16366 441 GLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIES--IDALAEAIKNY---QGG-VILVSHD 509 (568)
Q Consensus 441 ~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~~--~~~l~~~l~~~---~~t-vi~vsHd 509 (568)
..++ +.+|.+|++|| ...++... ...|...+... +.. +|++|+.
T Consensus 96 ------------------------~~~~~~~~~~~vliiDe-~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 96 ------------------------TALLEGLEQFDLICIDD-VDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp ------------------------GGGGTTGGGSSEEEEET-GGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred ------------------------HHHHHhccCCCEEEEec-cccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00032 Score=64.34 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|.+++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0002 Score=66.57 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=29.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
.+|.+++|+|++||||||+++.|++.+.+..+.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4688999999999999999999999887655544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00038 Score=64.84 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=20.8
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 350 VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678888887776 789999999999999999987
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00031 Score=64.48 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+|.+++|||++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.95 E-value=3.2e-05 Score=84.97 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=37.9
Q ss_pred EeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 62 VENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 62 i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++..++....++.++++++ +|+.++|+||||||||||+++|++.
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 445555555556778888888 8999999999999999999999985
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00037 Score=70.18 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.++||+|++|||||||++.|++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999985
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=4.5e-05 Score=74.14 Aligned_cols=142 Identities=15% Similarity=0.076 Sum_probs=67.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..|+.++|+||+||||||++.++........|. ...++.+.+.|... ....+.+.+....+... -..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-----~~~~~~l~~~p~~~--la~q~~~~~~~~~~~~~------~~~ 140 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-----AAECNIVVTQPRRI--SAVSVAERVAFERGEEP------GKS 140 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-----GGGCEEEEEESSHH--HHHHHHHHHHHTTTCCT------TSS
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-----CCceEEEEeccchH--HHHHHHHHHHHHhcccc------Cce
Confidence 468899999999999999887765322111111 11234455544210 01111122211111000 000
Q ss_pred CCC----CCcc--ccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCC-CCCHHHHH-HHHHHHHhcC--ceEEEE-ec
Q psy16366 440 FGL----PSYA--HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTN-NLDIESID-ALAEAIKNYQ--GGVILV-SH 508 (568)
Q Consensus 440 ~~l----~~~~--~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~-~LD~~~~~-~l~~~l~~~~--~tvi~v-sH 508 (568)
.|. .... ....+--.+.|.-.+... ..+.+.+++|+||.-. ++|..... .+...+.... .+++++ |.
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~ 218 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATI 218 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSS
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 000 0000 000111234566666543 3688999999999976 57777664 3444444332 233333 55
Q ss_pred chHHHHhh
Q psy16366 509 DERLIRET 516 (568)
Q Consensus 509 d~~~i~~~ 516 (568)
+.+.+.++
T Consensus 219 ~~~~~~~~ 226 (235)
T 3llm_A 219 DTSMFCEY 226 (235)
T ss_dssp CCHHHHHH
T ss_pred CHHHHHHH
Confidence 55544443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00038 Score=70.34 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=32.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.+|++++|+|+||+||||++..|++...+ ..+..+.++..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEecCc
Confidence 47999999999999999999999985321 1334677777665
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00066 Score=70.70 Aligned_cols=44 Identities=16% Similarity=0.455 Sum_probs=32.7
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
..+..+++.. -..++++++++.+| ..+|+|+||||||||+-+|.
T Consensus 3 M~l~~L~l~n--Fr~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNN--FKSHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEE--ETTEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEc--cccccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3455555541 12346777787775 89999999999999999986
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.89 E-value=6.9e-05 Score=77.00 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=39.3
Q ss_pred CCceeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 347 GGKVLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 347 ~~~~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
++..+++.++..|..|++ +.+.||+|+|||||++++++.+.+..+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 556788888889999988 999999999999999999998876554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00044 Score=65.46 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=25.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
..+|.+++|+||+|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45788999999999999999999988763
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00012 Score=74.11 Aligned_cols=40 Identities=25% Similarity=0.105 Sum_probs=34.0
Q ss_pred ee-eeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 353 EK-VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 353 ~~-vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
.+ ++|+++ |.+++++|+||+||||++..|++.+.+..|.|
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v 129 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV 129 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 45 677765 99999999999999999999999998766554
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0005 Score=63.59 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCcc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKG 391 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G 391 (568)
.++|+|++|+|||||++.++|...+..+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~~~ 31 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLG 31 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC------
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCccCC
Confidence 5899999999999999999997544333
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.88 E-value=5.4e-05 Score=77.80 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=37.2
Q ss_pred eEEEeCCceeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcC
Q psy16366 65 FSLSAKGVELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 65 ls~~~~~~~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|+..++...+++.++..|..|+. ++|.||+|+|||||+++|++.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33345566788888888999988 999999999999999999985
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=8.4e-05 Score=70.00 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=31.7
Q ss_pred EEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 66 SLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 66 s~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|++ ..+++++|++...+ +++|+|++|+|||||++.+.+..
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~ 49 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDR 49 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCC
Confidence 445554 36888888888777 68999999999999999999753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=64.39 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+..+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345569999999999999999998865
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=9.7e-05 Score=76.84 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.|.+.|++..++.+.++++++|+| +|||+||+|||||++.|.|..
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 577888888888888999999977 999999999999999998753
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.003 Score=64.15 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=39.6
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|-+-|+.+.--+.+|+.+.|.|++|+|||||+..++.... . .+..++|+.-|.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~-~g~~vl~~slE~ 106 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-D-NDDVVNLHSLEM 106 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-T-TTCEEEEEESSS
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-H-cCCeEEEEECCC
Confidence 3455666665689999999999999999999999885321 1 235677777664
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00045 Score=65.12 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+++|+|++|||||||++.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999974
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00047 Score=63.82 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|.+++|+|++||||||+++.|+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 577899999999999999999985
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00024 Score=76.89 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=41.3
Q ss_pred EEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 337 GLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 337 ~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.++++...| ....+++++++.+++| +.|+||||+|||||+++|++... .+.+.
T Consensus 42 ~l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~ 94 (499)
T 2dhr_A 42 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFIT 94 (499)
T ss_dssp HHHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEE
T ss_pred HHHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEE
Confidence 344554445 3456789999999999 99999999999999999999864 44444
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00055 Score=71.77 Aligned_cols=37 Identities=30% Similarity=0.615 Sum_probs=29.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcC-----------cCCCccEEEE
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGE-----------LTPNKGELRK 395 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~ 395 (568)
+..|..++|+|+||+|||||++.|+|. +.|..|.+..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 356788999999999999999999998 5677777654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00063 Score=65.97 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-.+|.+++|+|++||||||+++.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999999973
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00025 Score=72.52 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=32.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 511 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~ 511 (568)
++.||++|| ...|+......|.+.+.+.. ..+|++|++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 567999999 88999999999999998764 34667776654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00068 Score=61.45 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00014 Score=74.93 Aligned_cols=36 Identities=25% Similarity=0.403 Sum_probs=31.8
Q ss_pred eeeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRR--YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~--~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.+++.+.+|++ ++|+|++|||||||+++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 366777888889988 999999999999999999974
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00068 Score=62.97 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|..+.|+|++||||||+++.|+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999974
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0006 Score=63.50 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=22.0
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+++++++..... +++|+|++|+|||||++.+.+..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSC
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCC
Confidence 4678888888877 79999999999999999999853
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00013 Score=75.30 Aligned_cols=38 Identities=32% Similarity=0.376 Sum_probs=33.3
Q ss_pred eeeeeeeEEEeCCCE--EEEECCCCChHHHHHHHHhcCcC
Q psy16366 350 VLLEKVNFGLDMESR--VALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 350 ~il~~vs~~i~~Ge~--~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+++.+++.+.+|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367778888889998 99999999999999999998653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=70.79 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|+||||||||++.|+|...
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcc
Confidence 699999999999999999999854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00061 Score=64.18 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998865
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0029 Score=59.95 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDER 511 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~ 511 (568)
.+|.+|++||.-. +|......|...+.+.. ..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 3578999999755 88888999999888753 46888888764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00026 Score=75.04 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=44.0
Q ss_pred EEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 61 KVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..++++..|++.. ++++|+ +|++++++|+|||||||++..|++... +.+..+.++..++
T Consensus 78 v~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 78 VYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCS
T ss_pred HHHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeeccc
Confidence 3445666676544 677887 899999999999999999999998532 3456677666543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00048 Score=67.48 Aligned_cols=33 Identities=39% Similarity=0.564 Sum_probs=23.4
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+++.++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 344445545544 999999999999999999985
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0015 Score=67.17 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=64.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
..+..+.|.||.|+|||||++.++..+....+.. .....+-++.-. ...+....+ ..++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~--~~~~~~~~i~~~------~~~~~~~~~-----------~~l~~~ 102 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSL--GVLVKPIYVNAR------HRETPYRVA-----------SAIAEA 102 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHH--TCCEEEEEEETT------TSCSHHHHH-----------HHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhcc--CCCeEEEEEECC------cCCCHHHHH-----------HHHHHH
Confidence 3456799999999999999999988664321100 001112222211 112332222 223333
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHH--ccCCCeEEEeCCCCCCCHH-HHHHHHHHHHhc-------CceEEEEecc
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELT--LNNPDILILDEPTNNLDIE-SIDALAEAIKNY-------QGGVILVSHD 509 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~~~p~lLlLDEPt~~LD~~-~~~~l~~~l~~~-------~~tvi~vsHd 509 (568)
++.. .+....|.++.... +..++ ...|.+|++||.-.-.+.. ....+..++... +..+|++|++
T Consensus 103 l~~~-----~~~~~~~~~~~~~~-l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 103 VGVR-----VPFTGLSVGEVYER-LVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HSCC-----CCSSCCCHHHHHHH-HHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred hCCC-----CCCCCCCHHHHHHH-HHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 4432 12234455552222 22233 2346799999985432221 345555555422 3478999988
Q ss_pred hH
Q psy16366 510 ER 511 (568)
Q Consensus 510 ~~ 511 (568)
..
T Consensus 177 ~~ 178 (387)
T 2v1u_A 177 LG 178 (387)
T ss_dssp ST
T ss_pred Cc
Confidence 73
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0065 Score=63.07 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+.+|+++.|.||.|+|||||+..++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998776543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00067 Score=70.26 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=28.4
Q ss_pred ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 72 VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 72 ~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
..+|+++++++. +++|||++|||||||++.|.|..+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCc
Confidence 357888888888 999999999999999999999643
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0022 Score=57.79 Aligned_cols=61 Identities=21% Similarity=0.255 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHH-------hcCC-Cc--cCCCch---------HHHHHHhcc---CCeEEEEeCCHHHHHhhhceeeEE
Q psy16366 177 ADAAEPRARRILA-------GLGF-TT--IYIPSS---------RVHEIMRTW---KKTLLVVSHDQSFLNNICTDIIHL 234 (568)
Q Consensus 177 ~~~~~~~~~~~L~-------~lg~-~~--L~~ePn---------~L~~~l~~~---~~tvlvVSHd~~~l~~v~d~ii~L 234 (568)
..+++++.+..++ .+-. .. ++|||. ++.+++..+ +.|||+||||.+ +..+||++++|
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d~ii~l 135 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHVIRI 135 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEEEEE
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCCEEEEE
Confidence 4577777776554 1111 12 889992 555655543 579999999995 56799999999
Q ss_pred c--CCe
Q psy16366 235 D--MKK 238 (568)
Q Consensus 235 ~--~g~ 238 (568)
+ +|.
T Consensus 136 ~~~~g~ 141 (148)
T 1f2t_B 136 SLENGS 141 (148)
T ss_dssp EEETTE
T ss_pred EcCCCe
Confidence 4 553
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00079 Score=69.67 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=34.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~ 127 (568)
-|.+|+.+.|+||||||||||+..++.... +.+..+.|+..+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHAL 101 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeccccc
Confidence 478999999999999999999999997532 234567777665433
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00074 Score=62.42 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=22.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999853
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00064 Score=64.69 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+..|.++.|+|++||||||+++.|++.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999974
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=61.38 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00099 Score=60.48 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++||||||+++.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00097 Score=61.58 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=60.53 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.|+|++||||||+++.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999974
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=64.53 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+|.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 578899999999999999999998743
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0006 Score=68.95 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+.+++|||++|+|||||++.|.|...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 44899999999999999999999753
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0074 Score=64.32 Aligned_cols=124 Identities=15% Similarity=0.238 Sum_probs=69.1
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH----hc
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK----LF 426 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~ 426 (568)
-|+.+.-.+.+|+.+.|.|+.|+|||||+--++...--. | ..+.|+.-+ ++..+...+ ..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-------~~vl~fSlE--------ms~~ql~~R~~~~~~ 249 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-------DVVNLHSLE--------MGKKENIKRLIVTAG 249 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-------CEEEEECSS--------SCTTHHHHHHHHHHS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-------CEEEEEECC--------CCHHHHHHHHHHHHc
Confidence 345444368999999999999999999987665432211 2 245555422 232222221 12
Q ss_pred CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHH-HHHhcCce--E
Q psy16366 427 NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE-AIKNYQGG--V 503 (568)
Q Consensus 427 ~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~-~l~~~~~t--v 503 (568)
+++...++. .-..|+..+.+|+.-|...+.+.+++|.|+| ++++..+...+. +..+.+.. +
T Consensus 250 ~i~~~~l~~--------------g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~--~~s~~~i~~~ir~l~~~~~~~~~l 313 (444)
T 3bgw_A 250 SINAQKIKA--------------ARRDFASEDWGKLSMAIGEISNSNINIFDKA--GQSVNYIWSKTRQTKRKNPGKRVI 313 (444)
T ss_dssp CCCHHHHHH--------------TGGGTCCSCHHHHHHHHHHHHTSCEEEECCS--SCBHHHHHHHHHHHHHHSCSSCEE
T ss_pred CCCHHHHhc--------------ccCCCCHHHHHHHHHHHHHHhcCCEEEECCC--CCCHHHHHHHHHHHHHHhCCCCeE
Confidence 333222210 0012667777777777666666777777776 355555443333 33344555 6
Q ss_pred EEE
Q psy16366 504 ILV 506 (568)
Q Consensus 504 i~v 506 (568)
|+|
T Consensus 314 IVI 316 (444)
T 3bgw_A 314 VMI 316 (444)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00098 Score=68.86 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.+.+++|+|++|||||||++.|.|... +.+..+.++..++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 466899999999999999999998532 3344555555443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0012 Score=60.80 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00075 Score=62.64 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
-.+++|+|++|||||||++.|.+.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 357999999999999999999988754
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.017 Score=61.35 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999887764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0016 Score=60.12 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|-++.|+|++||||||+++.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999985
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0038 Score=66.74 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHH
Q psy16366 457 GQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 457 GqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
.+.+....+...+.+++++|+......-....-..+.+.+++.+..+|+|-+-.+...
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC----
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchh
Confidence 4777777888888889988876655443333456788888888888888887666543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=60.45 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+|++||||||+++.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999964
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0009 Score=65.53 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=21.3
Q ss_pred EEEECCCCChHHHHHHHHhcCcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+.|+||+|+|||||+++|++.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHcC
Confidence 89999999999999999998763
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=58.88 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHI 105 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~L 105 (568)
+++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.35 E-value=0.00029 Score=71.26 Aligned_cols=60 Identities=20% Similarity=0.086 Sum_probs=43.3
Q ss_pred EEeeeEEEeCCceeeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 61 KVENFSLSAKGVELFHN-ANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 61 ~i~nls~~~~~~~ll~~-isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
-.++++..|++.. .+ ++|+.. |++++++|+||+||||++..|++... +.+..+.++..+.
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 3445555565543 45 777766 99999999999999999999998532 3355677766554
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=60.50 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|++||||||+++.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999974
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=60.00 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999974
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=58.80 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0017 Score=63.83 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+||||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5899999999999999999974
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0019 Score=66.76 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=33.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
-|.+|+.+.|.||||||||||+..++.... ..+..+.|+..+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHA 100 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCC
Confidence 578999999999999999999999886422 23456777776643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=59.41 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+..+.|+|++||||||+.+.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 66899999999999999999985
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=59.38 Aligned_cols=121 Identities=14% Similarity=0.165 Sum_probs=66.5
Q ss_pred EeCCCEEEEECCCCChHHHHH-HHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFL-NLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
+.+| ++-|.||.|+|||||+ .+++...+...| .++.|+.-.. .+. . .+ +
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g-------~~vlyId~E~--s~~----~-~r---------------a 75 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD-------AVCLFYDSEF--GIT----P-AY---------------L 75 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT-------CEEEEEESSC--CCC----H-HH---------------H
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC-------ceEEEEeccc--hhh----H-HH---------------H
Confidence 5788 8999999999999995 444443321112 2345554322 121 1 11 2
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHH--c--cCCCeEEEeCCCCCCC-H--H-----------H-HH-------H
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELT--L--NNPDILILDEPTNNLD-I--E-----------S-ID-------A 491 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al--~--~~p~lLlLDEPt~~LD-~--~-----------~-~~-------~ 491 (568)
.++|++.... .+..-.-++++.+.++..+ + .+|+++++|--++-.- . + . .+ .
T Consensus 76 ~~lGvd~d~l--lv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~Lrk 153 (333)
T 3io5_A 76 RSMGVDPERV--IHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRI 153 (333)
T ss_dssp HHTTCCGGGE--EEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHH
T ss_pred HHhCCCHHHe--EEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHH
Confidence 3444432111 1111123566656666666 3 3699999998877641 0 0 1 11 2
Q ss_pred HHHHHHhcCceEEEEecchH
Q psy16366 492 LAEAIKNYQGGVILVSHDER 511 (568)
Q Consensus 492 l~~~l~~~~~tvi~vsHd~~ 511 (568)
|..++++++.+||+|-|=..
T Consensus 154 L~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 154 VTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHhCCEEEEECCeee
Confidence 33345677889999999765
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=62.84 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.-+++|+||+||||||+++.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999953
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0018 Score=61.61 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0023 Score=58.63 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999998653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0013 Score=63.87 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.9
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.-+++|+||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0035 Score=64.31 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=39.1
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
+-|+.+.--+.+|+.+.|.|++|+|||||+..|+..... .+..++|+.-|.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEm 84 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEM 84 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSS
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCC
Confidence 445555556899999999999999999999999864221 455778877765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+..+.|+|++||||||+++.|+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567899999999999999999984
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0014 Score=68.60 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
.+..++|+|++|||||||++.|++...+..+.|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~ 67 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVI 67 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5778999999999999999999998777777765
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=58.33 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999996
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0016 Score=63.97 Aligned_cols=27 Identities=30% Similarity=0.230 Sum_probs=23.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+..+.|+|++||||||+++.|+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 445678999999999999999999974
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.003 Score=59.14 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|-+++|+|+.||||||+++.|+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999975
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=59.88 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+|++||||||+++.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999974
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0023 Score=59.27 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|..+.|+|++||||||+++.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0029 Score=58.41 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
|-+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0027 Score=61.41 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|||++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 689999999999999999999754
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=58.60 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0016 Score=65.70 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 80 LQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 80 l~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.+..+..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34677899999999999999999999984
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0027 Score=58.90 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.+++|+|+.||||||+++.|+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.016 Score=56.33 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHH
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR 435 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~ 435 (568)
.+.+....-+.|.||.|+|||||++.|+..+ ...+-++.-......+
T Consensus 33 ~~g~~~~~~vll~G~~GtGKT~la~~la~~~-----------~~~~~~~~~~~~~~~~---------------------- 79 (262)
T 2qz4_A 33 QLGAKVPKGALLLGPPGCGKTLLAKAVATEA-----------QVPFLAMAGAEFVEVI---------------------- 79 (262)
T ss_dssp ---CCCCCEEEEESCTTSSHHHHHHHHHHHH-----------TCCEEEEETTTTSSSS----------------------
T ss_pred HcCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCCEEEechHHHHhhc----------------------
Q ss_pred HHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC-----------CHHHHHHHHHHHHhcCc---
Q psy16366 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL-----------DIESIDALAEAIKNYQG--- 501 (568)
Q Consensus 436 ~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L-----------D~~~~~~l~~~l~~~~~--- 501 (568)
.-.+....+-.+..+....|.+|++||.-.-. +......+..++..+..
T Consensus 80 -----------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 80 -----------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred -----------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Q ss_pred ----eEEEEecchHHHH
Q psy16366 502 ----GVILVSHDERLIR 514 (568)
Q Consensus 502 ----tvi~vsHd~~~i~ 514 (568)
.||.+|.....+.
T Consensus 143 ~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 143 TDHVIVLASTNRADILD 159 (262)
T ss_dssp TCCEEEEEEESCGGGGG
T ss_pred CCCEEEEecCCChhhcC
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0021 Score=65.86 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++|+||||+|||||+++|++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999984
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=57.22 Aligned_cols=19 Identities=42% Similarity=0.655 Sum_probs=18.3
Q ss_pred EEEEECCCCChHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLL 382 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l 382 (568)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0025 Score=62.58 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.003 Score=58.44 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+.+++|+|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 55799999999999999999985
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0017 Score=63.76 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
..+.++.|+|++||||||+.+.|+..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999998764
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0026 Score=60.49 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=21.2
Q ss_pred CCEEEEECCCCChHHHHHHHHhc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
+-+++|+|++||||||+++.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=59.18 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|+||||+|||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999753
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.00084 Score=63.48 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
+++|+|++|||||||++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0033 Score=58.99 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|-+++|+|+.||||||+++.|+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3668999999999999999999863
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0023 Score=67.07 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+..|.+++|||+||+|||||+++|+|..
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4567899999999999999999999863
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.024 Score=61.20 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.+.+|+.+.|.|+.|+|||||+.-++-.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 5789999999999999999997666543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=59.21 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
..|-+++|+|+.||||||+++.|+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999999985
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=62.45 Aligned_cols=24 Identities=46% Similarity=0.645 Sum_probs=22.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0027 Score=58.81 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997644
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0034 Score=58.88 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++||||||+++.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999973
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0051 Score=63.72 Aligned_cols=34 Identities=32% Similarity=0.541 Sum_probs=27.8
Q ss_pred CCEEEEECCCCChHHHHHHHHhc-----------CcCCCccEEEE
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKG-----------ELTPNKGELRK 395 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~ 395 (568)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~ 46 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEec
Confidence 56799999999999999999998 34566676654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0034 Score=66.77 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+||+|||||++.|.|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 89999999999999999999974
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0017 Score=61.39 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++|||||||++.|+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0014 Score=70.59 Aligned_cols=37 Identities=38% Similarity=0.558 Sum_probs=30.9
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 70 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.....+.++++.+..| +.|+||+|+|||||+++|++.
T Consensus 36 ~~~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp HCTHHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred hChHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3445677777777777 999999999999999999985
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0034 Score=62.89 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.|+||+|||||||.+.|+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0033 Score=57.75 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
++..+.|+|++||||||+++.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0056 Score=57.84 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 70 KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 70 ~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+...++..-+.+ .|..+.|+||+|+|||||+..|+.+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3445566655555 5889999999999999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 568 | ||||
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-29 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-06 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-28 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-07 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-28 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-07 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-27 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-08 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-26 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-07 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-11 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-06 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-08 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-08 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-09 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-24 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-08 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-11 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-24 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-09 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-12 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-09 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-11 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-09 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-10 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-10 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-06 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 7e-05 | |
| d1mb4a1 | 147 | c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semiald | 0.001 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.001 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.003 |
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 114 bits (286), Expect = 2e-29
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+L V F Y + +L ++F S +A GP+G GKST +LL+ P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 395 -----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY--------EKSRR 435
++ R +IG Q + L + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQD--SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 436 QLGMFGLPSYAHTIPIRD---LSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDAL 492
+ + +P +T +SGGQ+ R+A+A L NP IL+LDE T +LD ES +
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 493 AEAIKNYQGG--VILVSHDERLIRETD 517
+A+ + G ++++H I + D
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDAD 205
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 47.9 bits (114), Expect = 1e-06
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 60 IKVENFSLS-AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
+ + + ++ + + + GP+G GK+T+ +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 110 bits (276), Expect = 6e-28
Identities = 59/236 (25%), Positives = 94/236 (39%), Gaps = 43/236 (18%)
Query: 307 DEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGYPGGKV-LLEKVNFGLDMESRV 365
DE K ++++ + +VTF YPG +V L +N + V
Sbjct: 1 DEGKRVIDRATGDLE----------------FRNVTFTYPGREVPALRNINLKIPAGKTV 44
Query: 366 ALVGPNGIGKSTFLNLLKGELTPNKGELR-----------KSPRLRIGKFDQHSGEHLFP 414
ALVG +G GKST +L+ ++G + S R ++ Q+ HLF
Sbjct: 45 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV--HLFN 102
Query: 415 DDTPCEY-LMKLFNLPYEKSRRQLGMFGLPSYAHTIPI----------RDLSGGQKARVA 463
D + E+ M + + + LSGGQ+ R+A
Sbjct: 103 DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIA 162
Query: 464 LAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG--VILVSHDERLIRETD 517
+A L + ILILDE T+ LD ES A+ A+ Q ++++H I + D
Sbjct: 163 IARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQAD 218
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 49.1 bits (117), Expect = 5e-07
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
D++ N F+ + V N NL+I +G+ LVG +G GK+T+ I
Sbjct: 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 110 bits (276), Expect = 7e-28
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 28/205 (13%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+ V+F Y + L+ +N ++ VA VG +G GKST +NL+ G++
Sbjct: 19 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 78
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYL-MKLFNLPYEKSRRQLGMFGLPS 444
S R +IG Q ++ DT E + + E+ M
Sbjct: 79 GHNIKDFLTGSLRNQIGLVQQD---NILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 445 YAHTIPI----------RDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
+ +P LSGGQK R+++A + LNNP ILILDE T+ LD+ES + E
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 495 AIKNYQGG--VILVSHDERLIRETD 517
A+ ++V+H I D
Sbjct: 196 ALDVLSKDRTTLIVAHRLSTITHAD 220
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 48.6 bits (116), Expect = 6e-07
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
I +++ F + + + NL I G VG +G GK+TL+ I
Sbjct: 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 107 bits (269), Expect = 9e-27
Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Query: 306 DDEPKELLEKPREYIVKFRFPNPPYLPPPVLGLHDVTFGY--PGGKVLLEKVNFGLDMES 363
++ ELLEK ++ + + +V+F + G +L+ +N ++
Sbjct: 13 EEGFGELLEKVQQSNGDRKHSSDEN---------NVSFSHLCLVGNPVLKNINLNIEKGE 63
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
+A+ G G GK++ L L+ GEL ++G ++ S R + Q S + P +
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--VSFCSQFS--WIMPGTIKENIIF 119
Query: 424 KLFNLPYEK------SRRQLGMFGLPSYAHTIPIR---DLSGGQKARVALAELTLNNPDI 474
+ Y + Q + +T+ LSGGQ+AR++LA + D+
Sbjct: 120 GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADL 179
Query: 475 LILDEPTNNLDIESIDALAEAIKNYQGG---VILVSHDERLIRETD 517
+LD P LD+ + + + E+ ILV+ +R+ D
Sbjct: 180 YLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.8 bits (124), Expect = 6e-08
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 42 QSSKASSKRSTVDDNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTL 101
+ + S+ + ++ + L G + N NL I G + G G GKT+L
Sbjct: 21 EKVQQSNGDRKHSSDENNVSFSHLCLV--GNPVLKNINLNIEKGEMLAITGSTGSGKTSL 78
Query: 102 LRHIA 106
L I
Sbjct: 79 LMLIL 83
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 104 bits (262), Expect = 4e-26
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 28/205 (13%)
Query: 338 LHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
++ F Y V+L+ +N + + +VG +G GKST L++ P G++
Sbjct: 4 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRR---------- 435
R ++G Q + L + + EK
Sbjct: 64 GHDLALADPNWLRRQVGVVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 436 -QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAE 494
G + LSGGQ+ R+A+A +NNP ILI DE T+ LD ES +
Sbjct: 122 ISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 495 AIKNYQGG--VILVSHDERLIRETD 517
+ G VI+++H ++ D
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNAD 205
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 50.7 bits (121), Expect = 1e-07
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 40/214 (18%)
Query: 59 DIKVEN--FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
DI N F + N NL I G G+VG +G GK+TL + I IP +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ--RFYIPENG 58
Query: 117 DLLYCEQEVEASDDSAV---------NIVLSADKNRVKLL--KECSKLERDESGDNQLRL 165
+L ++ +D + + + VL + +E+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 166 TEVYDELKSIEADAAEPRARRILAG-------------------LGFTTIYIPSSRVHEI 206
+ EL+ + + G T + H I
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 207 MRTWK-----KTLLVVSHDQSFLNNICTDIIHLD 235
MR +T+++++H S + N II ++
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVME 211
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (261), Expect = 6e-26
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L ++T + G + K+N + + L+GP+G GK+T L ++ G P +G +
Sbjct: 9 LENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 67
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
I Q ++P T E + +K+ P ++ ++ +
Sbjct: 68 RDVTYLPPKDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQG 501
+ + P LSGGQ+ RVA+A + PD+L++DEP +NLD + A+ IK Q
Sbjct: 126 IEELLNRYP-AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 502 G----VILVSHDERLIRE 515
I V+HD+
Sbjct: 185 KLKVTTIYVTHDQVEAMT 202
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 60.9 bits (148), Expect = 4e-11
Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 33/213 (15%)
Query: 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID 117
V++K+EN + + NL I G L+GP+G GKTT LR IA L P+
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG--LEEPTEGR 62
Query: 118 LLYCEQEVEASD-----------DSAVNIVLSADKN--RVKLLKECSKLERDESGDNQLR 164
+ + +++V AV ++ +N +K+ K E D+
Sbjct: 63 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE 122
Query: 165 LTEVYDELKSIEAD---------------AAEPR---ARRILAGLGFTTIYIPSSRVHEI 206
L ++ + L A EP L+ L + + ++
Sbjct: 123 LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKL 182
Query: 207 MRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+ K T + V+HDQ + I ++ +L
Sbjct: 183 QQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 102 bits (257), Expect = 1e-25
Identities = 59/212 (27%), Positives = 92/212 (43%), Gaps = 34/212 (16%)
Query: 338 LHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE-- 392
L +VT Y G+ L+ VN + V+++GP+G GKST LN++ P +GE
Sbjct: 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY 63
Query: 393 -------------LRKSPRLRIGKFDQHSGEHLFPDDTPCE------YLMKLFNLPYEKS 433
L K R +IG Q +L P T E + E+
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 434 RRQL----GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESI 489
R++ M L LSGGQ+ RVA+A NNP I++ D+PT LD ++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 490 DALAEAIKNYQG----GVILVSHDERLIRETD 517
+ + + +K V++V+HD + R +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 47.5 bits (113), Expect = 1e-06
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
IK++N + + + + N NL I G ++GP+G GK+T+L I L P+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC--LDKPTE 59
Query: 116 IDLLYCEQEVEASDDSAV 133
++ + DD +
Sbjct: 60 GEVYIDNIKTNDLDDDEL 77
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (254), Expect = 2e-25
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNK------G 391
+ D++ GY K +LE++ ++ + V GPNGIGK+T L + L P K G
Sbjct: 5 IRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYA 446
+ +I + + +YL + +L K + L +
Sbjct: 63 VPITKVKGKIFFLPEEIIV--PRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK 120
Query: 447 HTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVI 504
+ +LS G RV LA L N +I +LD+P +D +S + ++I + G++
Sbjct: 121 K--KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 505 LVSHDERL 512
++S E L
Sbjct: 179 IISSREEL 186
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.5 bits (123), Expect = 4e-08
Identities = 28/197 (14%), Positives = 67/197 (34%), Gaps = 26/197 (13%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI--- 116
+++ + S+ + + I G GPNG GKTTLL+ I+T + I
Sbjct: 3 LEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 61
Query: 117 ---------DLLYCEQEVEASDDSAVNIVLSA-------DKNRVKLLKECSKLERDESGD 160
+ + +E+ +V L A N+ +++ +E +
Sbjct: 62 GVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK 121
Query: 161 NQLRLTEVYDELKSIEADAAEPRARRIL----AGLGFTTIYIPSSRVHEIMRTWKKTLLV 216
L++ + + +L + + + + EI++ ++
Sbjct: 122 KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 217 VSHDQSFLNNICTDIIH 233
+ S+ + + +H
Sbjct: 182 SREELSYCDVN--ENLH 196
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 100 bits (250), Expect = 2e-24
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 31/206 (15%)
Query: 338 LHDVTFGYPGGKVL---LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
L ++T + G L V+ + ++G +G GKST + + P +G +
Sbjct: 4 LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63
Query: 395 --------------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ- 436
R +IG QH +L T + ++L N P ++ +R+
Sbjct: 64 VDGQELTTLSESELTKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 437 ---LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALA 493
L + GL + P +LSGGQK RVA+A +NP +L+ DE T+ LD + ++
Sbjct: 122 TELLSLVGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 494 EAIKNYQGG----VILVSHDERLIRE 515
E +K+ ++L++H+ +++
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKR 206
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (125), Expect = 4e-08
Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 60 IKVEN----FSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
IK+ N F + ++ +N +L + +G+ YG++G +G GK+TL+R + L P+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL--LERPTE 59
Query: 116 IDLLYCEQEVEASDDSAV------------NIVLSADKNRVKLLKEC------SKLERDE 157
+L QE+ +S + + L + + + K E
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRARRI-----------LAGLGFTTIYIPSSRVHEI 206
L L + D+ S ++ + + +R+ + T + + I
Sbjct: 120 RVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 207 M-------RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+ R T+L+++H+ + IC + + +L
Sbjct: 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 99 bits (249), Expect = 2e-24
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGEL 393
VL + + Y G ++ ++ + V L+G NG GK+T L+ + G + KG++
Sbjct: 5 IVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 394 RKSP----------RLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ------L 437
+ R+G G +FP+ T E LM +K +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 438 GMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAI 496
+F L + LSGG++ +A+ ++ P +L++DEP+ L + + E I
Sbjct: 124 SLFPRLKERLKQLG-GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 497 KNYQG---GVILVSHDERLIRE 515
+ ++LV + +
Sbjct: 183 QKINQEGTTILLVEQNALGALK 204
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 55.7 bits (134), Expect = 3e-09
Identities = 32/208 (15%), Positives = 64/208 (30%), Gaps = 33/208 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT------------ 107
++V++ + + +L++ G+ L+G NG GKTT L IA
Sbjct: 7 LEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 108 RALAIPSSIDLLYCEQEVEASDDSAVNIVLSADKN-----RVKLLKECSKLERDESGDNQ 162
++ + + L+ +N + KE K + +
Sbjct: 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF 126
Query: 163 LRLTEVYDELKS------------IEADAAEPR---ARRILAGLGFTTIYIPSSRVHEIM 207
RL E +L A + P+ GL + + +I
Sbjct: 127 PRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 208 RTWKKTLLVVSHDQSFLNNICTDIIHLD 235
+ T+L+V + + L+
Sbjct: 187 QE-GTTILLVEQNALGALKVAHYGYVLE 213
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 2e-24
Identities = 37/214 (17%), Positives = 74/214 (34%), Gaps = 35/214 (16%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
+L ++ + G L+ V+ ++ ++GPNG GKST +N++ G L ++G +
Sbjct: 4 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 395 ----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY-------------- 430
+ G + T E L+ P
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 431 ------EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
EK+ + L L +LSGGQ V + + NP ++++DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDR-KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 485 DIESIDALAEAIKNYQG---GVILVSHDERLIRE 515
+ + + +++ H ++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 215
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 53.8 bits (129), Expect = 1e-08
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIA 106
++ EN + ++ + G ++GPNG GK+TL+ I
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 51
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 99.2 bits (247), Expect = 4e-24
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTP--------- 388
L DV + G + +++ + + L+GP+G GK+T L ++ G P
Sbjct: 6 LVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGD 64
Query: 389 ------NKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM---KLFNLPYEKSRRQ--- 436
KG I Q L+P T + + KL +P ++ ++
Sbjct: 65 KLVADPEKGIFVPPKDRDIAMVFQS--YALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 437 -LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEA 495
+ GL + P R+LSGGQ+ RVAL + P + ++DEP +NLD + +
Sbjct: 123 VAELLGLTELLNRKP-RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181
Query: 496 IKNYQGG----VILVSHDERLIRE 515
+K Q I V+HD+
Sbjct: 182 LKKLQRQLGVTTIYVTHDQVEAMT 205
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 60.3 bits (146), Expect = 7e-11
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 51/223 (22%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+++ + V +L++ G L+GP+G GKTT LR IA L PS +
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG--LEEPSRGQIY 61
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
++ V + I + + ++ + L + + +L+ +
Sbjct: 62 IGDKLVADPEK---GIFVPPKDRDIAMVFQSYALYPHMTVYDN---IAFPLKLRKVPRQE 115
Query: 180 AEPRARRILAGLGFTTIY--IPSS-------RV--------------------------- 203
+ R R + LG T + P RV
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 204 -------HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
++ R T + V+HDQ + I ++ L
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.8 bits (246), Expect = 6e-24
Identities = 61/217 (28%), Positives = 86/217 (39%), Gaps = 33/217 (15%)
Query: 332 PPPVLG---LHDVTFGYPGGK--VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386
P + G DV+F YP ++L+ + F L ALVGPNG GKST LL+
Sbjct: 5 PLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 387 TPNKGELR-----------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----- 430
P G+L + ++ Q +F L P
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP--QVFGRSLQENIAYGLTQKPTMEEIT 122
Query: 431 ---EKSRRQLGMFGLPSYAHTI---PIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484
KS + GLP T LSGGQ+ VALA + P +LILD+ T+ L
Sbjct: 123 AAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSAL 182
Query: 485 DIES----IDALAEAIKNYQGGVILVSHDERLIRETD 517
D S L E+ + Y V+L++ L+ + D
Sbjct: 183 DANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQAD 219
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.9 bits (132), Expect = 5e-09
Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 44/218 (20%)
Query: 59 DIKVENFSLS---AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
++ ++ S + V + + G LVGPNG GK+T+ + L P+
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQ--NLYQPTG 68
Query: 116 IDLL-------------------YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERD 156
LL QE + S + + + + + +
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 128
Query: 157 ESGDNQLRLTEVYDELKS----------------IEADAAEPRAR---RILAGLGFTTIY 197
+ L + YD A +P + L +
Sbjct: 129 GAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 198 IPSSRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLD 235
++E + +++L+++ S + I+ L+
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLE 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 95.7 bits (238), Expect = 9e-23
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 38/215 (17%)
Query: 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE--- 392
L + D+ Y GG +L+ V+ ++++G +G GKSTFL + P++G
Sbjct: 3 LHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 393 ---------------------LRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM----KLFN 427
+ R R+ QH +L+ T E +M ++
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLG 119
Query: 428 LPYEKSRRQ----LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
L +R + L G+ A LSGGQ+ RV++A PD+L+ DEPT+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 484 LDIESIDALAEAIKNYQG---GVILVSHDERLIRE 515
LD E + + ++ +++V+H+ R
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 214
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 64.1 bits (156), Expect = 4e-12
Identities = 40/227 (17%), Positives = 80/227 (35%), Gaps = 49/227 (21%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ V + G E+ +LQ +G ++G +G GK+T LR I L PS ++
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGAII 60
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLR----LTEVYDELKSI 175
Q + D + ++ L + + + + + + + E ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 176 EADAAEPRARRILAGLGFT-------------------------------------TIYI 198
A RA + LA +G T +
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 199 PSSRVHEIMRTWK------KTLLVVSHDQSFLNNICTDIIHLDMKKL 239
V E++R + KT++VV+H+ F ++ + +I L K+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 94.3 bits (234), Expect = 2e-22
Identities = 39/198 (19%), Positives = 78/198 (39%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGE----- 392
+ D+ G K +L+ ++F ++ L+GPNG GK+T L ++ + P+ G
Sbjct: 5 VKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 63
Query: 393 -----LRKSPRLRIGKFDQHSGEHLFPDDTP---CEYLMKLFNLPY----EKSRRQLGMF 440
R I + +G + + ++ + E R +
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121
Query: 441 GLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ 500
GL + S G ++ +A + NP + ILDEPT+ LD+ + + + +K
Sbjct: 122 GLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180
Query: 501 ---GGVILVSHDERLIRE 515
+++ SH+ +
Sbjct: 181 QEGLTILVSSHNMLEVEF 198
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 54.2 bits (130), Expect = 7e-09
Identities = 32/135 (23%), Positives = 48/135 (35%), Gaps = 13/135 (9%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
+ V++ E+ + +I G +GL+GPNG GKTT LR I+T L PSS +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVT 60
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADA 179
V + + L E + R+ G LR + +
Sbjct: 61 V--------FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF---VAGFYASSSSE 109
Query: 180 AEPRARRILAGLGFT 194
E R G
Sbjct: 110 IEEMVERATEIAGLG 124
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 1e-21
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 24/198 (12%)
Query: 338 LHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR--- 394
L +VT + G V+ + +N + V VGP+G GKST L ++ G T G+L
Sbjct: 3 LQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGE 61
Query: 395 ------KSPRLRIGKFDQHSGEHLFPDDTPCEYL---MKLFNLPYEKSRRQ----LGMFG 441
+G Q L+P + E + +KL E ++ +
Sbjct: 62 KRMNDTPPAERGVGMVFQS--YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQ 119
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 498
L P + LSGGQ+ RVA+ + P + +LDEP +NLD + +
Sbjct: 120 LAHLLDRKP-KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 499 YQGG-VILVSHDERLIRE 515
G +I V+HD+
Sbjct: 179 RLGRTMIYVTHDQVEAMT 196
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 61.5 bits (149), Expect = 2e-11
Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 33/211 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
++++N + + V + + NL I G VGP+G GK+TLLR IA L +S DL
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLF 58
Query: 120 YCEQEVEASDDSAVNIVLSADKNRVK-------------LLKECSKLERDESGDNQLRLT 166
E+ + + + + + + L K ++ + +
Sbjct: 59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 118
Query: 167 EVYDELKS---------------IEADAAEPR---ARRILAGLGFTTIYIPSSRVHEIMR 208
++ L AEP L+ L + + +
Sbjct: 119 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 178
Query: 209 TWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+T++ V+HDQ + I+ LD ++
Sbjct: 179 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 90.4 bits (224), Expect = 3e-21
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 28/202 (13%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
V+ L DV L ++ + + LVGPNG GKST L + G +T KG ++
Sbjct: 3 VMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQ 56
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLP--YEKSRRQLGMFGLP 443
+ +L + + + YL + E G L
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD 116
Query: 444 SYAHTIPIRDLSGGQKARVALAELTLN-------NPDILILDEPTNNLDIESIDALAEAI 496
LSGG+ RV LA + L +L+LDEP N+LD+ AL + +
Sbjct: 117 DKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 175
Query: 497 KNYQG---GVILVSHDERLIRE 515
+++ SHD
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLR 197
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 55.3 bits (133), Expect = 3e-09
Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 41/217 (18%)
Query: 57 SVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSI 116
S+ +++++ + S + + ++ +G LVGPNG GK+TLL +A
Sbjct: 1 SIVMQLQDVAESTR----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG---MTSGKG 53
Query: 117 DLLYCEQEVEASDDSAVNIV-------------LSADKNRVKLLKECSKLERDESGDNQL 163
+ + Q +EA + + + + ++ E L
Sbjct: 54 SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL 113
Query: 164 RLTEVYDELKSIEADAAEPR---ARRILAGLGFT------------TIYIPSSRVHEIMR 208
L + + + R A +L + ++ + +
Sbjct: 114 ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173
Query: 209 T------WKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
+++ SHD + L K+
Sbjct: 174 ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 210
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.3 bits (213), Expect = 1e-19
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 29/204 (14%)
Query: 338 LHDVTFGYPGGKVL-LEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR-- 394
+ +V+ + GKV+ L+ VN ++ R ++GP+G GK+TF+ ++ G P+ GEL
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 395 -----------KSPRLR-IGKFDQHSGEHLFPDDTPCEYL---MKLFNLPY----EKSRR 435
P R IG Q L+P+ T E + + + ++
Sbjct: 66 DRLVASNGKLIVPPEDRKIGMVFQT--WALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 436 QLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDAL 492
+ + + P R+LSG Q+ RVALA + +P +L+LDEP +NLD +S AL
Sbjct: 124 VAKILDIHHVLNHFP-RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 493 AEAIKNYQGG-VILVSHDERLIRE 515
+ +++ G +++VSHD I
Sbjct: 183 VKEVQSRLGVTLLVVSHDPADIFA 206
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 59.3 bits (143), Expect = 2e-10
Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 58 VDIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSS 115
V I V+N S K V N N+ I +G R+G++GP+G GKTT +R IA L +PS+
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG--LDVPST 59
Query: 116 IDLLYCEQEVEASD----------------DSAVNIVLSADKNRVKLLKEC--SKLERDE 157
+L + ++ V ++ A+ L+A +N L SK E +
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 158 SGDNQLRLTEVYDELKSIEADAAEPRARRI------LAGLGFTTIYIPSSRV-------- 203
+ ++ +++ L + + + +R+ + + P S +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 204 ----HEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
E+ TLLVVSHD + + I + L KL
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 79.7 bits (196), Expect = 2e-17
Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 22/198 (11%)
Query: 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394
++ + ++ + L+ ++ ++ ++GP G GK+ FL L+ G P+ G +
Sbjct: 1 MIEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 395 ---------KSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPY----EKSRRQLGMFG 441
+ I Q+ LFP + L + ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQN--YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD---IESIDALAEAIKN 498
+ P LSGG++ RVALA + NP IL+LDEP + LD E+ + +
Sbjct: 117 IEHLLDRNP-LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175
Query: 499 YQG-GVILVSHDERLIRE 515
V+ ++HD+ R
Sbjct: 176 KNKLTVLHITHDQTEARI 193
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 57.4 bits (138), Expect = 7e-10
Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 33/209 (15%)
Query: 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL 119
I++E+ S K L N +L++ SG + ++GP G GKT L IA +P S +L
Sbjct: 2 IEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRIL 58
Query: 120 YCEQEVEA-----------SDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEV 168
++V + ++ ++ KN ++ K++ + + R ++
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK-KIKDPKRVLDTARDLKI 117
Query: 169 YDELKSIEADAAEPRARRI------------------LAGLGFTTIYIPSSRVHEIMRTW 210
L + +R+ L+ L T + + +
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 211 KKTLLVVSHDQSFLNNICTDIIHLDMKKL 239
K T+L ++HDQ+ + I + KL
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKL 206
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 73.1 bits (178), Expect = 1e-15
Identities = 21/186 (11%), Positives = 52/186 (27%), Gaps = 14/186 (7%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
++ + G G+GK+T + + L + + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 424 KLFNLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483
K F + + + A E + ++I+DE
Sbjct: 62 KFFTSKKLVGSYGVNV----------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKM 111
Query: 484 LDI--ESIDALAEAIKNYQGGVILVSHDERLIRETDCELWALEKKNIRKFN-GDFDDYRE 540
+ D + + + + V+ + E+ L + + + D E
Sbjct: 112 ELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVK-EIRRLPGAVLIELTPENRDVILE 170
Query: 541 KLLTSL 546
+L+ L
Sbjct: 171 DILSLL 176
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 3e-06
Identities = 19/160 (11%), Positives = 41/160 (25%), Gaps = 9/160 (5%)
Query: 87 RYGLVGPNGHGKTTLLRHIATRALAIPSS------IDLLYCEQEVEASDDSAVNIVLSAD 140
+ + G G GKTTL++ I L + + ++ +
Sbjct: 2 KIIITGEPGVGKTTLVKKIV-ERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 141 KNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPRARRILAGLGFTTIYIPS 200
K + +L + + + + D + G
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKV-IIIDEIGKMELFSKKFR 119
Query: 201 SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLF 240
V +IM ++ + + +I L L
Sbjct: 120 DLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVLI 158
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.9 bits (181), Expect = 2e-15
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELR---------KSPRLRIGKFD 405
V+F + + L+GP G GKS FL L+ G + P++GE+R R IG
Sbjct: 18 VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76
Query: 406 QHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQ-----LGMFGLPSYAHTIPIRDLSGGQKA 460
Q LFP + + R + G+ P LSGG++
Sbjct: 77 QD--YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-ARLSGGERQ 133
Query: 461 RVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG----VILVSHDERLIRE 515
RVALA + P +L+LDEP + +D+++ L E ++ Q ++ V+HD
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM 192
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 32/190 (16%)
Query: 76 HNANLQIASGRRY-GLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASD----- 129
N+ GR Y L+GP G GK+ L IA + P ++ ++
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAG--IVKPDRGEVRLNGADITPLPPERRG 71
Query: 130 ------DSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELKSIEADAAEPR 183
D A+ LS +N L+ ++ERD + L A +
Sbjct: 72 IGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGE 131
Query: 184 ARRI-LAGLGFTTIYI-----PSSRV------------HEIMRTWKKTLLVVSHDQSFLN 225
+R+ LA + P S V + R + +L V+HD
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 226 NICTDIIHLD 235
+ ++ +
Sbjct: 192 MLADEVAVML 201
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 7e-05
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 21/133 (15%)
Query: 392 ELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFGLPSYAHTIPI 451
EL K+P + ++ + +D P +K P K + +
Sbjct: 285 ELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYL----------- 333
Query: 452 RDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQGG---VI 504
SGG+K ALA L + +LDE LDI ++ +A I+ ++ I
Sbjct: 334 ---SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 505 LVSHDERLIRETD 517
++S + ++D
Sbjct: 391 VISLKNTMFEKSD 403
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} Length = 147 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Score = 37.3 bits (86), Expect = 0.001
Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 14/143 (9%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
RV LVG G+ S + + E R + F P+ ++
Sbjct: 2 RVGLVGWRGMVGSVLMQRMVEE--------RDFDLIEPVFFSTSQIGVPAPNFGKDAGML 53
Query: 424 KLFNLPYEKSRRQLGMFGLPS-YAHTIPIRDLSGGQKARVA-LAELTLNNPDI-LILDEP 480
+ + Y + G K A + + + LD
Sbjct: 54 HDAFDIESLKQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDP- 112
Query: 481 TNNLDIESIDALAEAIKNYQGGV 503
N I + K + GG
Sbjct: 113 VNLKQIL--HGIHHGTKTFVGGA 133
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 37.7 bits (86), Expect = 0.001
Identities = 12/55 (21%), Positives = 17/55 (30%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTP 418
V LVG GKS+ L + + +G + E D P
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIP 57
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 0.003
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLM 423
+V + G GKS+ LN L G ++ + R + + G L DT
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 62
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 568 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.93 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.93 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.93 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.93 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.92 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.92 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.92 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.92 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.91 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.91 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.91 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.9 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.9 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.9 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.88 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.87 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.85 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.85 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.84 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.72 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.19 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.73 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.72 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.37 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.09 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.6 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.16 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.13 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.11 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.07 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.05 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.03 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.02 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.97 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.93 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.93 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.9 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.77 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.76 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.76 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.75 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.72 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.72 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.68 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.64 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.63 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.61 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.61 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.55 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.54 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.43 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.42 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.4 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.4 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.4 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.39 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.37 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.35 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.33 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.27 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.26 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.26 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.23 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.23 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.23 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.22 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.22 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.18 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.17 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.17 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.15 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.14 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.14 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.13 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.11 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.09 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.08 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.04 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.02 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.02 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.94 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.93 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.91 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.9 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.86 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.85 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.84 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.83 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.82 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.82 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.81 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.76 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.76 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.73 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.72 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.72 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.72 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.72 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.7 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.7 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.69 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.68 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.68 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.66 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.64 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.63 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.62 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.62 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.61 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.61 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.6 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.6 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.58 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.57 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.56 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.54 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.54 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.54 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.53 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.52 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.52 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.51 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 95.49 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.48 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.47 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.47 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.46 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.43 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.43 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.42 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.37 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.37 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.37 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.37 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.36 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.34 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.33 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.26 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.26 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.25 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.23 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.21 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.2 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.2 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.17 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.17 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.14 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.11 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.1 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.1 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.1 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.08 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.06 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.06 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.04 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.0 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.99 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.98 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.94 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.94 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.94 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.91 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.89 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.87 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.87 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.87 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.87 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.83 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.83 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.83 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.79 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.79 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.77 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.77 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.74 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.73 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.7 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.69 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.68 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.68 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.65 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.62 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.61 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.61 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.6 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.59 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.58 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.56 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.53 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.5 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.48 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.47 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.45 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.4 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.39 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.37 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.36 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.33 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.3 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.29 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.27 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.26 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.25 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.25 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.24 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.24 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.23 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.23 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.22 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.21 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.2 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.13 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.13 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.13 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.09 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.09 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.06 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.06 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.04 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.03 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.0 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.99 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.98 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.94 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.91 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.91 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.9 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.86 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.84 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.82 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.81 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.8 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.78 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.75 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.74 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.73 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.72 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.7 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.7 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.67 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.66 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.64 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.6 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.59 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.56 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.51 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.5 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.49 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.49 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.48 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.45 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.43 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.43 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.41 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.41 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.34 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.34 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.28 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.28 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.27 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.23 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.23 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.22 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.19 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.19 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.19 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.14 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.08 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.03 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.98 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.97 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.95 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.95 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.85 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.8 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.78 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.76 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.72 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.72 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.69 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.67 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.57 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.55 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.46 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.43 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.41 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.29 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.28 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.26 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.23 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.15 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.06 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.86 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.85 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.81 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.81 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.79 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.78 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.5 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.42 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.38 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.36 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.05 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.05 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.03 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.92 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.88 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.8 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.65 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.6 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.59 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.3 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.28 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.27 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.09 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.08 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.77 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.68 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.6 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.39 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.29 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.11 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.06 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 88.96 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.87 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.82 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.81 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.76 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.76 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.75 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.43 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.32 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.22 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.18 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.1 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.89 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.84 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.38 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.35 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.34 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.19 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.12 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.01 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.92 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.8 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.71 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.62 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.95 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.61 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.42 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.14 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.13 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.9 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.8 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.77 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.7 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.31 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 83.99 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.98 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.82 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.78 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.53 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.5 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.33 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.12 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.98 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.86 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.41 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.21 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4e-50 Score=392.02 Aligned_cols=199 Identities=25% Similarity=0.362 Sum_probs=172.1
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|+++||+++| ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++. +.+|||+|
T Consensus 6 ~I~v~nlsk~y-g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 6 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEE-CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 38999999999 788999999999999999999999999999999999999999999998753 34699999
Q ss_pred cCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|++ .+|+.+|+.+++... .+.+. +.+.++|+.++|.+..+. ++.+|||||||||+|||||+.+|+|||||
T Consensus 85 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGGq~QRvaiAraL~~~P~iLllD 161 (239)
T d1v43a3 85 QSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-YPAQLSGGQRQRVAVARAIVVEPDVLLMD 161 (239)
T ss_dssp C--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-CTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred ech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcC-ChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence 997 489999999988643 24454 345678999999987765 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|||++||+.++..+.++|.++ +.|||+||||++++.++||++++|.+|+++. .|+++++
T Consensus 162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el 224 (239)
T d1v43a3 162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEV 224 (239)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999988888654 7899999999999999999999999999974 6777665
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-50 Score=392.50 Aligned_cols=198 Identities=25% Similarity=0.351 Sum_probs=145.2
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEec
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFDQ 406 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~q 406 (568)
++++||+++| ++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++. +..|||+||
T Consensus 1 Iev~nv~k~y-g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence 5799999999 788999999999999999999999999999999999999999999998753 346999999
Q ss_pred CCCCCCCCCCCHHHHHHHh---cCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeC
Q psy16366 407 HSGEHLFPDDTPCEYLMKL---FNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDE 479 (568)
Q Consensus 407 ~~~~~l~~~~~~~e~l~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDE 479 (568)
++ .+++.+|+.+++... .+.+ .+.+.++|+.++|.+..+. ++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-~~~~LSGGqkQRvaiAraL~~~P~illlDE 156 (232)
T d2awna2 80 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-KPKALSGGQRQRVAIGRTLVAEPSVFLLDE 156 (232)
T ss_dssp SC--CC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred cc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhC-ChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 97 489999999987532 2222 2457789999999987664 789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 480 PTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 480 Pt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
||++||+.+...+.+.|.+ .+.|||+||||++++..+||++++|++|+++. .|+++++
T Consensus 157 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el 218 (232)
T d2awna2 157 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 218 (232)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EeCHHHH
Confidence 9999999999888887754 47899999999999999999999999999975 5776664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-49 Score=389.65 Aligned_cols=199 Identities=25% Similarity=0.386 Sum_probs=176.6
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------------Ce
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 399 (568)
.|+++||+++| ++..+++||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++. +.
T Consensus 3 ~i~v~nl~k~y-g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred cEEEEeEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 58999999999 788999999999999999999999999999999999999999999998643 34
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+|||+||++ .+|+.+|+.+++.. ..+.+.. .+.++|+.++|++..+ +++++|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-~~p~~LSGGqkQRv~IAraL~~~P 158 (240)
T d1g2912 82 DIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-RKPRELSGGQRQRVALGRAIVRKP 158 (240)
T ss_dssp SEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-CCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCC
Confidence 699999997 48999999998753 3455543 4677899999987665 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+||||||||+|||+.++..+.+.|.+ ++.|||+||||++++..+||++++|++|+++.. |+.+++
T Consensus 159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~-G~~~el 227 (240)
T d1g2912 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDEV 227 (240)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred CEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 99999999999999999988888864 478999999999999999999999999999854 666654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.3e-49 Score=386.09 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=175.8
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
+|+++||+++| ++ .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++. +.+|||+|
T Consensus 1 mi~v~nlsk~y-~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 1 MIEIESLSRKW-KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp CEEEEEEEEEC-SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEe-CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence 58999999999 44 589999999999999999999999999999999999999999998753 24699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcC-CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFN-LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPT 481 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt 481 (568)
|++ .+|+.+|+.|++.. ..+ ...+++.++++.+++.+..+. ++.+|||||||||+|||||+.+|+||||||||
T Consensus 79 Q~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt 155 (229)
T d3d31a2 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (229)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-CGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred ccc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhC-ChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence 997 48999999998753 223 245678899999999987764 78999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 482 NNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 482 ~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
++||+.+...+.+.|.+ .+.|||+||||++++..+||++++|++|+++ ..|+++++
T Consensus 156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el 215 (229)
T d3d31a2 156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEI 215 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999988888754 4679999999999999999999999999997 46777665
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.7e-49 Score=386.41 Aligned_cols=200 Identities=28% Similarity=0.397 Sum_probs=175.7
Q ss_pred eEEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------Ce
Q psy16366 335 VLGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP--------------RL 399 (568)
Q Consensus 335 ~l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 399 (568)
.|+++||+++|+. ...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++. +.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 4789999999953 35789999999999999999999999999999999999999999997642 34
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHh---cCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKL---FNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~---~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
+|||+||++ .+|+.+|+.|++... .+.+. +.+.++|+.+||.+..+ +++++|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-HFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-SCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhh-CChhhCCHHHHhHHHHHhHHhhcc
Confidence 699999997 489999999998642 34444 34678899999987665 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+||||||||++||+.+...+.+.|+++ +.|||+||||++++.++||++++|.+|+++. .|+++++
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el 228 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDL 228 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 999999999999999999888887654 7899999999999999999999999999975 5676665
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2e-49 Score=387.62 Aligned_cols=199 Identities=24% Similarity=0.357 Sum_probs=173.7
Q ss_pred eEEEEeeEEEeCCCc---eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC--------------
Q psy16366 335 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~---~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 397 (568)
+|+++||++.|+.+. .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 589999999995432 589999999999999999999999999999999999999999998753
Q ss_pred CeeEEEEecCCCCCCCCCCCHHHHHHH---hcCCC----HHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc
Q psy16366 398 RLRIGKFDQHSGEHLFPDDTPCEYLMK---LFNLP----YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN 470 (568)
Q Consensus 398 ~~~i~~~~q~~~~~l~~~~~~~e~l~~---~~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~ 470 (568)
+.+|||+||++ .+++.+|+.+++.. ..+.+ .+.+.++|+.+||.+..+ +++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-SYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-SCBSCCCHHHHHHHHHHHHHHT
T ss_pred hcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHhhhhcc
Confidence 13599999997 48899999998753 23443 245678999999998765 4789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKN----YQGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDD 537 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~ 537 (568)
+|+||||||||++||+.+...+++.|.+ ++.|||+||||++++..+||++++|.+|++++ .|++++
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~e 227 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSE 227 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 9999999999999999999999888865 37899999999999999999999999999985 455544
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.1e-49 Score=382.24 Aligned_cols=193 Identities=29% Similarity=0.395 Sum_probs=166.8
Q ss_pred eEEEEeeEEEeCCCc---eeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-------------
Q psy16366 335 VLGLHDVTFGYPGGK---VLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------- 398 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~---~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 398 (568)
+|+++||++.|+.+. .+|+||||+|++||+++|+|||||||||||++|+|+++|++|+|.++..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 589999999995332 4799999999999999999999999999999999999999999987541
Q ss_pred --eeEEEEecCCCCCCCCCCCHHHHHHHh--c----CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHH
Q psy16366 399 --LRIGKFDQHSGEHLFPDDTPCEYLMKL--F----NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAE 466 (568)
Q Consensus 399 --~~i~~~~q~~~~~l~~~~~~~e~l~~~--~----~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~ 466 (568)
.+|||+||++ .+++.+|+.+++... . +.+. +.+.++|+.++|......++|.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 3599999997 488999999986531 1 2332 345678999999764444578999999999999999
Q ss_pred HHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEE
Q psy16366 467 LTLNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRK 530 (568)
Q Consensus 467 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~ 530 (568)
||+.+|+||||||||++||+.+...+++.|.++ +.|||+||||++++ ++|||+++|++|+|+.
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE
Confidence 999999999999999999999999999888654 67999999999988 6999999999999974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6e-48 Score=379.32 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=174.2
Q ss_pred CCCeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------e
Q psy16366 332 PPPVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------L 399 (568)
Q Consensus 332 ~~~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~ 399 (568)
+.++|+++||+++| ++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++.. .
T Consensus 3 sd~~Lev~~l~k~y-g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp CSEEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred cceEEEEeeEEEEE-CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 35689999999999 7889999999999999999999999999999999999999999999987542 2
Q ss_pred eEEEEecCCCCCCCCCCCHHHHHHHhc-C-CC----HHHHHHHHHhC-CCCCccccCCCCCCCHhHHHHHHHHHHHccCC
Q psy16366 400 RIGKFDQHSGEHLFPDDTPCEYLMKLF-N-LP----YEKSRRQLGMF-GLPSYAHTIPIRDLSGGQKARVALAELTLNNP 472 (568)
Q Consensus 400 ~i~~~~q~~~~~l~~~~~~~e~l~~~~-~-~~----~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p 472 (568)
.++|++|++ .+|+.+|+.+++.... . .. ...+..++..+ ++....+ +++++|||||||||+|||||+.+|
T Consensus 82 gi~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~LSGG~~Qrv~iAraL~~~P 158 (240)
T d1ji0a_ 82 GIALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK-QLGGTLSGGEQQMLAIGRALMSRP 158 (240)
T ss_dssp TEEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTT-SBSSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHh-CchhhCCHHHHHHHHHHHHHHhCC
Confidence 488999986 4899999999875432 1 11 12344556666 5665554 478999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 473 DILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 473 ~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
++|||||||+|||+.++..+.+.|+++ +.|||+||||++++.++||++++|++|+++ +.|+++++.
T Consensus 159 ~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~ 227 (240)
T d1ji0a_ 159 KLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred CEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999999999999988755 679999999999999999999999999997 578888765
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.6e-48 Score=381.28 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=174.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------------
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------------- 397 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 397 (568)
.|+++||+++| ++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++.
T Consensus 2 ~Lev~nl~k~y-g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEE-CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 48999999999 788999999999999999999999999999999999999999999998643
Q ss_pred -------CeeEEEEecCCCCCCCCCCCHHHHHHH----hcCCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHH
Q psy16366 398 -------RLRIGKFDQHSGEHLFPDDTPCEYLMK----LFNLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARV 462 (568)
Q Consensus 398 -------~~~i~~~~q~~~~~l~~~~~~~e~l~~----~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv 462 (568)
+.+|||+||++ .+++.+|+.+++.. ..+.+. +.+.++|+.+++......+++.+|||||||||
T Consensus 81 ~~~~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred HhHHHHHhcceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 13599999997 48899999987643 234443 34667899999987554556899999999999
Q ss_pred HHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 463 ALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 463 ~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||+||||++++..+||||++|.+|+|++ .|+++++
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~~~ev 236 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQV 236 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999999999999999988888654 5799999999999999999999999999984 5666654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-47 Score=373.80 Aligned_cols=201 Identities=21% Similarity=0.331 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC----------CeeEEEEe
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP----------RLRIGKFD 405 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~i~~~~ 405 (568)
|.++||+++| +++++|+||||+|.+||++||+||||||||||+|+|+|+++|++|+|.... +..+||+|
T Consensus 3 I~v~nl~k~y-g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 3 VVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEeEEEEE-CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 7899999999 789999999999999999999999999999999999999999999998754 35699999
Q ss_pred cCCCCCCCCCCCHHHHHHH---hcCCCHH----HHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEe
Q psy16366 406 QHSGEHLFPDDTPCEYLMK---LFNLPYE----KSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILD 478 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~---~~~~~~~----~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLD 478 (568)
|.+ .+++.+|+.|++.. .++.+.. .++.+++.++|...... ++.+|||||||||+|||||+.+|++||||
T Consensus 82 q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-RVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-BGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhh-hhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 986 58899999998743 3344443 35677888999876654 78999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHHH
Q psy16366 479 EPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYREK 541 (568)
Q Consensus 479 EPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~~ 541 (568)
|||+|||+.++..+.++|+++ +.|||+||||++++..+||++++|.+|+++ +.|+++++++.
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~~~ 223 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELKER 223 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHhc
Confidence 999999999999999888654 679999999999999999999999999997 56888887653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-47 Score=379.85 Aligned_cols=204 Identities=20% Similarity=0.274 Sum_probs=176.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------------eeE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------------LRI 401 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 401 (568)
.+|+++||+++| ++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++.. ..|
T Consensus 3 ~iL~v~nlsk~y-g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred ceEEEEEEEEEE-CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 379999999999 7889999999999999999999999999999999999999999999987642 249
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc---------------C--CC---HHHHHHHHHhCCCCCccccCCCCCCCHhHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF---------------N--LP---YEKSRRQLGMFGLPSYAHTIPIRDLSGGQKAR 461 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~---------------~--~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqR 461 (568)
+|+||++. +++.+|+.|++.... . .. .+.+.++++.+++....+ +++.+||||||||
T Consensus 82 ~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 82 VRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-RKAGELSGGQMKL 158 (254)
T ss_dssp EECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-SBGGGSCHHHHHH
T ss_pred CccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhcc-CchhhCCcHHHHH
Confidence 99999984 788999999875310 0 11 134667899999987655 4889999999999
Q ss_pred HHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHH
Q psy16366 462 VALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDY 538 (568)
Q Consensus 462 v~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~ 538 (568)
|+|||||+.+|+||||||||+|||+.+...+.+.|+++ +.|||+||||++++.++||++++|.+|+++. .|++++.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~ 237 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEE 237 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHHH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEE-EecHHHH
Confidence 99999999999999999999999999999988888654 6799999999999999999999999999974 6777765
Q ss_pred HHHH
Q psy16366 539 REKL 542 (568)
Q Consensus 539 ~~~~ 542 (568)
.+..
T Consensus 238 ~~~~ 241 (254)
T d1g6ha_ 238 IKNV 241 (254)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 5444
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.4e-47 Score=372.98 Aligned_cols=201 Identities=29% Similarity=0.413 Sum_probs=167.5
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
+|+++||+|+|++++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +.+|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 589999999997667899999999999999999999999999999999999999999998753 457999
Q ss_pred EecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCcccc----------CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHT----------IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~----------~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +|+. |+.+++.... ..........++..++...... .....|||||||||+|||||+.+
T Consensus 81 v~Q~~~--lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDSA--IMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSSC--CCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred Eccccc--cCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999974 6765 8988874321 2345555555554444322111 12357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|+ ..|+++++.+
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999888775 679999999999996 59999999999997 5789888754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.5e-45 Score=358.94 Aligned_cols=196 Identities=28% Similarity=0.423 Sum_probs=168.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC---------CeeEEEEe
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP---------RLRIGKFD 405 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~i~~~~ 405 (568)
.|++ ++.++| ++..+ ||||++. +++++|+||||||||||+|+|+|+++|++|+|.+++ +.+|||+|
T Consensus 2 ~l~v-~~~k~~-g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~ 76 (240)
T d2onka1 2 FLKV-RAEKRL-GNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CEEE-EEEEEE-TTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEE-EEEEEE-CCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence 3667 678899 55443 8999995 689999999999999999999999999999998753 45799999
Q ss_pred cCCCCCCCCCCCHHHHHHHhc-CCCH----HHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCC
Q psy16366 406 QHSGEHLFPDDTPCEYLMKLF-NLPY----EKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEP 480 (568)
Q Consensus 406 q~~~~~l~~~~~~~e~l~~~~-~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEP 480 (568)
|++ .+|+.+|+.|++.... ..+. +.+.++++.+||.+..+. ++.+|||||||||+|||||+.+|++||||||
T Consensus 77 Q~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~-~~~~LSGG~kQRvaiAral~~~P~illlDEP 153 (240)
T d2onka1 77 QDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-KPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-CGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred cch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhC-ChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence 997 4899999999986422 2332 457788999999987765 7899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 481 TNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 481 t~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+|||+.++..+.+.|+++ +.|||+||||++.+..+||++++|.+|+++. .|+.+++.
T Consensus 154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~ 215 (240)
T d2onka1 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHh
Confidence 9999999999999888654 6799999999999999999999999999975 57776653
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-45 Score=359.97 Aligned_cols=198 Identities=25% Similarity=0.403 Sum_probs=165.1
Q ss_pred EEEEeeEEEeCC-CceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEEE
Q psy16366 336 LGLHDVTFGYPG-GKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIGK 403 (568)
Q Consensus 336 l~~~~v~~~y~~-~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~~ 403 (568)
|+++||+|+|++ .+++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +.+|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 679999999964 45799999999999999999999999999999999999999999999764 346999
Q ss_pred EecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCC-----------CccccCCCCCCCHhHHHHHHHHHHHccC
Q psy16366 404 FDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLP-----------SYAHTIPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 404 ~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~-----------~~~~~~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
++|++. +|. .|+.+++... .....+.+...+...++. .... ..+..|||||||||+|||||+.+
T Consensus 82 v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~-~~g~~LSGGq~QRvalARal~~~ 157 (241)
T d2pmka1 82 VLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGLSGGQRQRIAIARALVNN 157 (241)
T ss_dssp ECSSCC--CTT-SBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS-TTTTCCCHHHHHHHHHHHHHTTC
T ss_pred Eecccc--cCC-ccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcC-CCCCccCHHHHHHHhhhhhhhcc
Confidence 999973 664 5999987532 234555555544443332 1122 23578999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|++ .|+++++.
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~-~G~~~ell 225 (241)
T d2pmka1 158 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELL 225 (241)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHH
T ss_pred cchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999875 569999999999985 699999999999985 58887764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-45 Score=360.49 Aligned_cols=200 Identities=28% Similarity=0.412 Sum_probs=164.0
Q ss_pred eEEEEeeEEEeCCC--ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeE
Q psy16366 335 VLGLHDVTFGYPGG--KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRI 401 (568)
Q Consensus 335 ~l~~~~v~~~y~~~--~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 401 (568)
.|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +.+|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 59999999999642 3599999999999999999999999999999999999999999998764 3469
Q ss_pred EEEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHH---------HHHHhC--CCCCccccCCCCCCCHhHHHHHHHHHHH
Q psy16366 402 GKFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSR---------RQLGMF--GLPSYAHTIPIRDLSGGQKARVALAELT 468 (568)
Q Consensus 402 ~~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGqkqRv~lA~al 468 (568)
+|++|++. +|. .|+.+++.... ........ ..+..+ ++...... .+.+|||||||||+|||||
T Consensus 91 ~~v~Q~~~--lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~-~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 91 AAVGQEPQ--VFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDE-AGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp EEECSSCC--CCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCS-SCSSSCHHHHHHHHHHHHH
T ss_pred hhcccccc--ccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhc-cCccCChhHceEEEEeecc
Confidence 99999983 664 58999876432 12222222 223333 33333332 4578999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 469 LNNPDILILDEPTNNLDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 469 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|++ .|+++++.+
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~-~Gt~~eLl~ 240 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIRE-GGTHQQLME 240 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999754 579999999999885 599999999999985 588888654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.4e-45 Score=360.91 Aligned_cols=200 Identities=29% Similarity=0.361 Sum_probs=166.4
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +..|+
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 48999999999654 4699999999999999999999999999999999999999999998754 34699
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh--cCCCHHHHHHHHHhCCC-----------CCccccCCCCCCCHhHHHHHHHHHHHc
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL--FNLPYEKSRRQLGMFGL-----------PSYAHTIPIRDLSGGQKARVALAELTL 469 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~--~~~~~~~~~~~L~~~~l-----------~~~~~~~~~~~LSgGqkqRv~lA~al~ 469 (568)
|++|++. +|. .|+.+++... ...+.+++.+++...++ ...... .+..|||||||||+|||||+
T Consensus 93 ~v~Q~~~--l~~-~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~-~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 93 LVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHH
T ss_pred EEeeccc--cCC-cchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcC-CCCCcCHHHHHHHHHHHHHh
Confidence 9999974 554 4677765432 23456666655554443 333332 45789999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 470 NNPDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 470 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|++ .|+++++.+
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~-~G~~~eLl~ 239 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLA 239 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999876 679999999999885 699999999999975 588877654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-44 Score=357.45 Aligned_cols=201 Identities=30% Similarity=0.409 Sum_probs=169.6
Q ss_pred eEEEEeeEEEeCCC-ceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC-----------CeeEE
Q psy16366 335 VLGLHDVTFGYPGG-KVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP-----------RLRIG 402 (568)
Q Consensus 335 ~l~~~~v~~~y~~~-~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i~ 402 (568)
-|+++||+|+|+++ +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +..|+
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 49999999999644 5799999999999999999999999999999999999999999998754 35799
Q ss_pred EEecCCCCCCCCCCCHHHHHHHh-cCCCHHHHHHHHHhCCCCCccc-------c---CCCCCCCHhHHHHHHHHHHHccC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKL-FNLPYEKSRRQLGMFGLPSYAH-------T---IPIRDLSGGQKARVALAELTLNN 471 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~-~~~~~~~~~~~L~~~~l~~~~~-------~---~~~~~LSgGqkqRv~lA~al~~~ 471 (568)
|++|++ .+|. .|+.+++... .....+++.++++..++..... . .....|||||||||+|||||+++
T Consensus 96 ~v~Q~~--~lf~-~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 96 LVQQDN--ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp EECSSC--CCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeccc--cCCC-CCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 999987 3664 5999988543 2345667777777766543211 1 12357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+. .||+|++|++|+|+. .|+++++.+
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~-~G~~~eLl~ 241 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVE-TGTHRELIA 241 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999876 569999999999885 699999999999985 588887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-41 Score=332.87 Aligned_cols=196 Identities=26% Similarity=0.328 Sum_probs=164.7
Q ss_pred CeEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC-----------eeEE
Q psy16366 334 PVLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR-----------LRIG 402 (568)
Q Consensus 334 ~~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i~ 402 (568)
.+|+++||+++| .|+||||+|++||++||+||||||||||+++|+|+. |++|+|.+... ...+
T Consensus 2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 478999998665 699999999999999999999999999999999975 68999987642 2478
Q ss_pred EEecCCCCCCCCCCCHHHHHHHhc--CCCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc-------CCC
Q psy16366 403 KFDQHSGEHLFPDDTPCEYLMKLF--NLPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLN-------NPD 473 (568)
Q Consensus 403 ~~~q~~~~~l~~~~~~~e~l~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~-------~p~ 473 (568)
|++|+.. .....++.+++.... ....+.+.++++.+++....+. ++.+|||||||||+|||+|++ +|+
T Consensus 76 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ 152 (231)
T d1l7vc_ 76 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-STNQLSGGEWQRVRLAAVVLQITPQANPAGQ 152 (231)
T ss_dssp EECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTS-BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eeecccc--CCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCc-ChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence 9988764 333456777654322 2235567788999999887764 789999999999999999997 779
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHH
Q psy16366 474 ILILDEPTNNLDIESIDALAEAIKNY---QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYR 539 (568)
Q Consensus 474 lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~ 539 (568)
||||||||+|||+.+...+.++|+++ +.|||+||||++++..+||++++|++|+++ ..|+.++..
T Consensus 153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev~ 220 (231)
T d1l7vc_ 153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEVL 220 (231)
T ss_dssp EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHHS
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999888888654 679999999999999999999999999997 578887763
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-41 Score=337.91 Aligned_cols=195 Identities=24% Similarity=0.366 Sum_probs=154.9
Q ss_pred EEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCC
Q psy16366 336 LGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPD 415 (568)
Q Consensus 336 l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~ 415 (568)
+.++|++ | .++++|+||||+|++|+++||+||||||||||+++|+|+++|++|.|.++. +|+|++|++. +|+
T Consensus 39 i~~~~~~--~-~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~~- 110 (281)
T d1r0wa_ 39 VSFSHLC--L-VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW--IMP- 110 (281)
T ss_dssp -CHHHHH--H-TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCC--CCS-
T ss_pred EEEEEcC--C-CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEecccc--ccC-
Confidence 4444554 3 457899999999999999999999999999999999999999999998875 5899999873 565
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHhCCC-------CCccc---cCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCC
Q psy16366 416 DTPCEYLMKLFNLPYEKSRRQLGMFGL-------PSYAH---TIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLD 485 (568)
Q Consensus 416 ~~~~e~l~~~~~~~~~~~~~~L~~~~l-------~~~~~---~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD 485 (568)
.|+.+++..............+....+ ..... .....+|||||||||+|||||+.+|+||||||||++||
T Consensus 111 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD 190 (281)
T d1r0wa_ 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190 (281)
T ss_dssp EEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred ceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence 488888754333444444444443332 21111 12346799999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-Hhc--CceEEEEecchHHHHhhCceEEEEECCeEEEEcCCHHHHHH
Q psy16366 486 IESIDALAEAI-KNY--QGGVILVSHDERLIRETDCELWALEKKNIRKFNGDFDDYRE 540 (568)
Q Consensus 486 ~~~~~~l~~~l-~~~--~~tvi~vsHd~~~i~~~~~~i~~l~~g~i~~~~g~~~~~~~ 540 (568)
+.+...+++.+ ... +.|+|+|||+++.+. .||+|++|++|+++ ..|+++++..
T Consensus 191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~-~~Gt~~eL~~ 246 (281)
T d1r0wa_ 191 VFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSY-FYGTFSELQS 246 (281)
T ss_dssp HHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEE-EECCHHHHhc
Confidence 99999888764 333 579999999999874 69999999999997 4688888754
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-40 Score=318.59 Aligned_cols=180 Identities=25% Similarity=0.318 Sum_probs=149.9
Q ss_pred eEEEEeeEEEeCCCceeeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECC------CeeEEEEecCC
Q psy16366 335 VLGLHDVTFGYPGGKVLLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSP------RLRIGKFDQHS 408 (568)
Q Consensus 335 ~l~~~~v~~~y~~~~~il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~i~~~~q~~ 408 (568)
.|+++||+++| + +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++. +.+++|++|+.
T Consensus 2 ~lev~~ls~~y-~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGY-D-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEES-S-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred eEEEEEEEEEe-C-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence 48999999999 3 5899999999999999999999999999999999999999999999865 45799999986
Q ss_pred CCCCCCCCCHHHHHHH---hcC--CCHHHHHHHHHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC
Q psy16366 409 GEHLFPDDTPCEYLMK---LFN--LPYEKSRRQLGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN 483 (568)
Q Consensus 409 ~~~l~~~~~~~e~l~~---~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~ 483 (568)
. ++...++.+++.. .++ ....++.+.++.+++.+.. +++.+|||||||||+|||+|+.+|+||||||||+|
T Consensus 80 ~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g 155 (200)
T d1sgwa_ 80 I--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 155 (200)
T ss_dssp C--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTT--SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred c--CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccc--cccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 3 6677888887643 233 4567778889998886532 36789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc----CceEEEEecchHHHHhhCceEEEEE
Q psy16366 484 LDIESIDALAEAIKNY----QGGVILVSHDERLIRETDCELWALE 524 (568)
Q Consensus 484 LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~i~~~~~~i~~l~ 524 (568)
||+.++..+++.|.++ +.+||+++||+ .+||.+.+|+
T Consensus 156 LD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 156 IDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp SCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred cCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence 9999999888888765 23444445554 4688887764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.4e-26 Score=224.07 Aligned_cols=188 Identities=21% Similarity=0.276 Sum_probs=112.1
Q ss_pred eEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--HHHHHH
Q psy16366 60 IKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--AVNIVL 137 (568)
Q Consensus 60 I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~~~~v~ 137 (568)
|+++|++++|++..+|+|+||+|.+||++||+||||||||||+++|+|... |..+.+.+.++++...... .+..++
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~ 78 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVF 78 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEEC
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchhhceeeeec
Confidence 789999999999999999999999999999999999999999999999642 4445555444443221110 011111
Q ss_pred hccHHHHHHHHHHHHH------hhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCc
Q psy16366 138 SADKNRVKLLKECSKL------ERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPS 200 (568)
Q Consensus 138 ~~~~~~~~l~~~~~~l------~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~eP 200 (568)
+... ....+...+.+ ......+...+..++++.+. .....++++++|.+++..-... ++|||
T Consensus 79 Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP 157 (232)
T d2awna2 79 QSYA-LYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp SSCC-C---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEEST
T ss_pred cccc-cccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1110 00000000000 00111111334444444432 1223466667666655432222 88999
Q ss_pred h-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 201 S-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 201 n-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
. +|.++.++.+.|+|+||||++++..+||||++|++|+|+.++.+.+.|.
T Consensus 158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 1 5666667789999999999999999999999999999998765555553
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=2.6e-26 Score=222.90 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=124.4
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchh--HHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDS--AVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~--~~~~v 136 (568)
.|+++|++++|++..+|+|+||+|.+||++||+||||||||||+|+|+|... |..+.+.+.++++...... .+..+
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCcccceEEEE
Confidence 5999999999999999999999999999999999999999999999999743 4455665555554322111 01111
Q ss_pred HhccHHHHHHHHHHHHHhh---ccCC---ChHHHHHHHHHHHhc-------cCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSADKNRVKLLKECSKLER---DESG---DNQLRLTEVYDELKS-------IEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~---~~~~---~~~~~l~~v~~el~~-------~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
++.. .....+...+.+.. .... ....+..++++.+.. ....++++++|..++..-... ++||
T Consensus 84 ~Q~~-~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE 162 (239)
T d1v43a3 84 FQSY-AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 162 (239)
T ss_dssp EC-------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred eech-hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecC
Confidence 1111 00000000111111 0011 113444555554421 233577778887776543332 8899
Q ss_pred c-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 S-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 P-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
| ++|.++.++.+.|+|+||||++++..+||||++|++|+|+..+-+.+.|
T Consensus 163 Pts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9 2566776778999999999999999999999999999999765544444
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.93 E-value=5.8e-26 Score=220.78 Aligned_cols=178 Identities=20% Similarity=0.173 Sum_probs=123.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce---------------------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID--------------------- 117 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~--------------------- 117 (568)
.|+++|++++|++..+|+|+||+|.+||++||+||||||||||+|+|+|... |..++
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccchhhhccccc
Confidence 5899999999999999999999999999999999999999999999999743 33333
Q ss_pred --EEEEeccccCCch-hHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 118 --LLYCEQEVEASDD-SAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 118 --i~~~~qe~~~~~~-~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
+.++.|+....+. +..+.+... ..+..........+..++.+.+. .....|+++++|..
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~-----------~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFP-----------LKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHH-----------HHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhh-----------HHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence 4445554432221 221111100 00000110111334455555442 12345888888887
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++..-... ++|||. .|.++.++++.|||+||||++++..+||||++|++|+|+..+.+.+.|
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 76543332 889992 566777778999999999999999999999999999999876554444
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-25 Score=218.43 Aligned_cols=188 Identities=19% Similarity=0.316 Sum_probs=126.0
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|+|++|++. .+|+|+||+|++||++||+||||||||||+++|+|.. -|..+.+.+.++++...+...+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~--~p~sG~I~~~g~~i~~~~~~~~~ 78 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--RPTEGSVLVDGQELTTLSESELT 78 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS--CCSEEEEEETTEEECTTCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc--cccCCceEEcCeEeeeCChhhhh
Confidence 58999999999643 5899999999999999999999999999999999964 3556777776666654332211
Q ss_pred ------HHHHhccHHHH---HHHHHHH---HHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCC
Q psy16366 134 ------NIVLSADKNRV---KLLKECS---KLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFT 194 (568)
Q Consensus 134 ------~~v~~~~~~~~---~l~~~~~---~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~ 194 (568)
..|++.. ... ...+... .+......+...+..++++.+. .....++++++|.+++..-..
T Consensus 79 ~~rr~ig~VfQ~~-~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 79 KARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHHHEEECCSSC-CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hhhcccccccccc-ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 1111110 000 0000000 0001111112344555555442 123457778888777654332
Q ss_pred c----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 195 T----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 195 ~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
. ++|||. .|.++.++++.|||+||||++++..+||||++|++|+|+..+.+.+.|
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 2 889992 566666778999999999999999999999999999999876665555
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.92 E-value=5.3e-26 Score=219.35 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=123.2
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH--HHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA--VNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~--~~~v 136 (568)
+|+++|+|++|++ .+|+|+||+|++||++||+||||||||||+++|+|.. .|..+.+.+.++++....... +..+
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~--~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH--VPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS--CCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCc--CCCCCEEEEccEeccccchhHhcceee
Confidence 5899999999976 4899999999999999999999999999999999964 355566665555543211100 0111
Q ss_pred Hhcc------HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 137 LSAD------KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 137 ~~~~------~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
++.. .....+. -...+ .......+..++.+.+. .....++++++|.+++..-... |+||
T Consensus 78 ~Q~~~l~~~~tV~enl~-~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDE 153 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLE-FGMRM---KKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (229)
T ss_dssp CTTCCCCTTSCHHHHHH-HHHHH---HCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred ccccccCccccHHHHHH-HHHhh---ccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecC
Confidence 1100 0000000 00001 11112345555555542 2234588889998888765543 8899
Q ss_pred ch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. +|.++.++.+.|+|+||||++++..+||||++|++|+|+..+.+.+.|
T Consensus 154 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 91 455555677899999999999999999999999999999765444444
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.92 E-value=2.6e-25 Score=216.03 Aligned_cols=190 Identities=26% Similarity=0.307 Sum_probs=122.9
Q ss_pred ceEEeeeEEEe--CCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch------
Q psy16366 59 DIKVENFSLSA--KGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD------ 130 (568)
Q Consensus 59 ~I~i~nls~~~--~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~------ 130 (568)
.|+++|+|++| +...+|+|+||+|++||++||+||||||||||+++|+|... |..+++.+.++++...+.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCchhhcchh
Confidence 58999999999 45689999999999999999999999999999999999642 344444443333321110
Q ss_pred -hHHHHHHhccH--HHHHHHHHHHH-Hhh--ccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 131 -SAVNIVLSADK--NRVKLLKECSK-LER--DESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 131 -~~~~~v~~~~~--~~~~l~~~~~~-l~~--~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
..+..|++... ......+.... +.. ........+..++++.+. .....++++++|.+++..-...
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ 160 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPS 160 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccc
Confidence 00111111100 00000000000 000 000111334555555442 1234588889988887654433
Q ss_pred --cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 196 --IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 196 --L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
|+||| +.|.++.++.+.|+|+||||++++..+||||++|++|+|+..+-+.+.|.
T Consensus 161 llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred ceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 88899 25666667779999999999999999999999999999998766555553
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.92 E-value=1.2e-24 Score=210.20 Aligned_cols=181 Identities=20% Similarity=0.194 Sum_probs=117.3
Q ss_pred ceEEeeeEEEeCCc----eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHH-
Q psy16366 59 DIKVENFSLSAKGV----ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAV- 133 (568)
Q Consensus 59 ~I~i~nls~~~~~~----~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~- 133 (568)
+|+++|+|++|+.. .+|+|+||+|.+||++||+|||||||||||++|+|.. -|..+.+.+.+.++...+....
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~--~p~sG~I~~~g~~i~~~~~~~~~ 78 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--KPTEGEVYIDNIKTNDLDDDELT 78 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--CCSEEEEEETTEECTTCCHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC--CCCcceeEECCEEcCcCChhhcc
Confidence 58999999999532 4799999999999999999999999999999999964 3556667666666544332221
Q ss_pred -------HHHHhccHH--HHHHHHHHHH-Hhh--ccCCChHHHHHHHHHHHhc-----------cCCCChHHHHHHHHHh
Q psy16366 134 -------NIVLSADKN--RVKLLKECSK-LER--DESGDNQLRLTEVYDELKS-----------IEADAAEPRARRILAG 190 (568)
Q Consensus 134 -------~~v~~~~~~--~~~l~~~~~~-l~~--~~~~~~~~~l~~v~~el~~-----------~~~~~~~~~~~~~L~~ 190 (568)
..|+|.... .....+.... +.. .......++...+.+.|+. ....++++++|..++.
T Consensus 79 ~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 111111000 0000000000 000 0111222333333333322 1224788888888776
Q ss_pred cCCCc----cCCCc-------------hHHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE
Q psy16366 191 LGFTT----IYIPS-------------SRVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY 242 (568)
Q Consensus 191 lg~~~----L~~eP-------------n~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~ 242 (568)
.-... ++||| +.|.++.++++.|+|+||||++++ .+||||++|++|+|+..
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~ 226 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVERE 226 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEE
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEe
Confidence 54433 88999 256676677899999999999987 69999999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.92 E-value=4.2e-25 Score=215.79 Aligned_cols=191 Identities=15% Similarity=0.182 Sum_probs=122.5
Q ss_pred CCccceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHH
Q psy16366 55 DNSVDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVN 134 (568)
Q Consensus 55 ~~~~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~ 134 (568)
....+|+++|++++|++..+|+|+||+|++||++||+||||||||||+++|+|... |..+.+.+.++++.........
T Consensus 2 ~sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~ 79 (240)
T d1ji0a_ 2 VSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVIN 79 (240)
T ss_dssp CCSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHH
T ss_pred CcceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEecccccccccHHHHH
Confidence 34568999999999999999999999999999999999999999999999999642 4556666655555433222111
Q ss_pred HH---Hhc-cHHHHHHHHHHHH--Hhh--ccCCC-hHHHHHHHHHH---Hh-----ccCCCChHHHHHHHHHhcCCCc--
Q psy16366 135 IV---LSA-DKNRVKLLKECSK--LER--DESGD-NQLRLTEVYDE---LK-----SIEADAAEPRARRILAGLGFTT-- 195 (568)
Q Consensus 135 ~v---~~~-~~~~~~l~~~~~~--l~~--~~~~~-~~~~l~~v~~e---l~-----~~~~~~~~~~~~~~L~~lg~~~-- 195 (568)
.. +.. +...+.-+...+. +.. ..... .......+.+. +. ..+..+.+++++..++..-...
T Consensus 80 r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 80 RMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp HTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred HhcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 00 000 0000000000000 000 11111 12223333332 21 2345788898888876543332
Q ss_pred --cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 196 --IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 196 --L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++|||. .+.++ ++.|.|||+||||++++..+||||++|++|+++.. |+.+..
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l-~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~-g~~~el 226 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNALGALKVAHYGYVLETGQIVLE-GKASEL 226 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH-HHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-EEHHHH
T ss_pred EeeecCCCcCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 889992 34443 34489999999999999999999999999999875 554443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.7e-24 Score=211.10 Aligned_cols=187 Identities=18% Similarity=0.233 Sum_probs=117.8
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhH---HHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSA---VNI 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~---~~~ 135 (568)
.|.|+|++++|+++.+|+|+||+|.+||++||+||||||||||+++|+|... |..+.+.+.++++....... +..
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~ 79 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISY 79 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChHHHHhhEeE
Confidence 3889999999999999999999999999999999999999999999999743 44555555444432211000 000
Q ss_pred HHhcc-----HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCC
Q psy16366 136 VLSAD-----KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIP 199 (568)
Q Consensus 136 v~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~e 199 (568)
+.+.. ......+.....+......+....+..+.+.+. .+...+.++++|..++..-... ++||
T Consensus 80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE 159 (238)
T d1vpla_ 80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 159 (238)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 00000 000000000011111000011223333443321 3445678888887776543332 8899
Q ss_pred ch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 200 SS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 200 Pn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
|. .+.++ ++.|.|||++|||++++..+||||++|++|+++.. |..+..
T Consensus 160 Pt~gLD~~~~~~i~~~i~~~-~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~-g~~~el 220 (238)
T d1vpla_ 160 PTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET-GTVEEL 220 (238)
T ss_dssp TTTTCCHHHHHHHHHHHHHH-HHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEE-EEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 92 33333 33489999999999999999999999999999975 554443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=5.2e-25 Score=217.10 Aligned_cols=189 Identities=18% Similarity=0.232 Sum_probs=119.9
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--------
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD-------- 130 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~-------- 130 (568)
.|+|+|++++|++..+|+||||+|.+||++||+||||||||||+++|+|... |..+.+.+.++++.....
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCccchhcccc
Confidence 3899999999999999999999999999999999999999999999999642 455666665555421100
Q ss_pred --hHH-------HHHHhccHH--HHHHHHHHHH-HhhccCC---ChHHHHHHHHHHHh--------ccCCCChHHHHHHH
Q psy16366 131 --SAV-------NIVLSADKN--RVKLLKECSK-LERDESG---DNQLRLTEVYDELK--------SIEADAAEPRARRI 187 (568)
Q Consensus 131 --~~~-------~~v~~~~~~--~~~l~~~~~~-l~~~~~~---~~~~~l~~v~~el~--------~~~~~~~~~~~~~~ 187 (568)
... ..|++.... .....+.... ....... +...+..++++.+. .....++++++|.+
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~ 159 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 159 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHH
Confidence 000 001110000 0000000000 0000001 11233344444321 13446888888887
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
++..-... ++|||. .|.++ ++.+.|||+||||++++..+||||++|++|+|+.++.+.+.|.
T Consensus 160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l-~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH-HHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh-cccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 76543222 889992 44444 3448899999999999999999999999999997655444443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=1.1e-24 Score=214.85 Aligned_cols=187 Identities=12% Similarity=0.130 Sum_probs=122.5
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHH---
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNI--- 135 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~--- 135 (568)
+|+++|+|++|++..+|+||||+|.+||++||+||||||||||+++|+|.. -|..+.+.+.++++..........
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~--~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL--KADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS--CCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCC--cCCCcEEEECCEeccchhHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999963 355677777766664433222110
Q ss_pred --HHhccHHH--HHHHHHHHHHhh--------------ccCCCh---HHHHHHHHHHHh-------ccCCCChHHHHHHH
Q psy16366 136 --VLSADKNR--VKLLKECSKLER--------------DESGDN---QLRLTEVYDELK-------SIEADAAEPRARRI 187 (568)
Q Consensus 136 --v~~~~~~~--~~l~~~~~~l~~--------------~~~~~~---~~~l~~v~~el~-------~~~~~~~~~~~~~~ 187 (568)
+++..... ....+.. .+.. ...... ..+..++.+.+. ..+..+.+++++..
T Consensus 82 ~~v~Q~~~~~~~ltv~enl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~ 160 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENL-LIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVE 160 (254)
T ss_dssp EECCCCCGGGGGSBHHHHH-HGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred CccCCccccCCCCeeeeee-eehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHH
Confidence 11111000 0000000 0000 000111 123334444332 23456788888877
Q ss_pred HHhcCCCc----cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 188 LAGLGFTT----IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 188 L~~lg~~~----L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
++..-... ++|||. .|.++ +..|.|||+||||++++..+||||++|++|+++..+.+-+.+
T Consensus 161 iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l-~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 161 IGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH-HHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHH-HHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence 66532222 889992 34443 455899999999999999999999999999999765443333
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.2e-24 Score=210.89 Aligned_cols=177 Identities=16% Similarity=0.208 Sum_probs=114.1
Q ss_pred ceEEeeeEEEeCCc---eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceE-----------------
Q psy16366 59 DIKVENFSLSAKGV---ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDL----------------- 118 (568)
Q Consensus 59 ~I~i~nls~~~~~~---~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i----------------- 118 (568)
.|+++|+||+|+++ .+|+|+||+|++||++|||||||||||||+++|+|... |..+.|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC--CCcCEEEECCEecchhhhHHHHH
Confidence 59999999999753 59999999999999999999999999999999999743 333444
Q ss_pred --EEEeccccCCchhHHHHHHhc---cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH----h-----ccCCCChHHHH
Q psy16366 119 --LYCEQEVEASDDSAVNIVLSA---DKNRVKLLKECSKLERDESGDNQLRLTEVYDEL----K-----SIEADAAEPRA 184 (568)
Q Consensus 119 --~~~~qe~~~~~~~~~~~v~~~---~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el----~-----~~~~~~~~~~~ 184 (568)
.++.|+....+.+..+.+... ............. ..+.+..+.+ . .....++++++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~----------~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQ 158 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK----------SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQ 158 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHH----------HTCHHHHHTSTTGGGCBCCSSCSSSCHHHHH
T ss_pred HhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHH----------HHHHHHHHhccccchhhHhccCccCChhHce
Confidence 445554433333322222211 0000000000000 0000111111 1 11236888999
Q ss_pred HHHHHhcCCCc----cCCCch---------HHHHHH----hccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 185 RRILAGLGFTT----IYIPSS---------RVHEIM----RTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 185 ~~~L~~lg~~~----L~~ePn---------~L~~~l----~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
|..|+..-+.. ++|||. .+.+.+ +..++|+|+||||++.+. .||+|++|++|+|+.+ |+++
T Consensus 159 RvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~-Gt~~ 236 (251)
T d1jj7a_ 159 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREG-GTHQ 236 (251)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEE-ECHH
T ss_pred EEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE-CCHH
Confidence 98887765443 889992 333444 345789999999999885 5999999999999874 6666
Q ss_pred HH
Q psy16366 248 LF 249 (568)
Q Consensus 248 ~~ 249 (568)
..
T Consensus 237 eL 238 (251)
T d1jj7a_ 237 QL 238 (251)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.90 E-value=1.5e-23 Score=204.84 Aligned_cols=184 Identities=13% Similarity=0.176 Sum_probs=112.0
Q ss_pred ceEEeeeEEEeCC-ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------E
Q psy16366 59 DIKVENFSLSAKG-VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID-------------------L 118 (568)
Q Consensus 59 ~I~i~nls~~~~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~-------------------i 118 (568)
+|+++|+||+|++ +++|+|+||+|++|+++|||||||||||||+++|+|...| ..+. +
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEeccccHHHHHhhe
Confidence 5899999999955 6799999999999999999999999999999999997433 2333 3
Q ss_pred EEEeccccCCchhHHHHHHhc---cHHHHHHHHHHHHHhhccCCChHHHHHHHHH-HH-hccCCCChHHHHHHHHHhcCC
Q psy16366 119 LYCEQEVEASDDSAVNIVLSA---DKNRVKLLKECSKLERDESGDNQLRLTEVYD-EL-KSIEADAAEPRARRILAGLGF 193 (568)
Q Consensus 119 ~~~~qe~~~~~~~~~~~v~~~---~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~-el-~~~~~~~~~~~~~~~L~~lg~ 193 (568)
.|+.|+......+..+.+... ......+.... .......... .+..-++ .+ +.-...++++++|..++..-+
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~ 155 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVL-DLAFARSFVE--NMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHH-HHHTCTTTTT--SSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEccccccCCcchhhheecccccccchhhHHHHH-HHHHhhhhhc--cCcccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 455665544333332222110 00000000000 0000000000 0000000 00 001135888988887766433
Q ss_pred Cc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 194 TT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 194 ~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.. ++|||. .+.+.++. .++|+|+||||++.+.. ||+|++|++|+|+. .|+++..
T Consensus 156 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~-~G~~~eL 224 (242)
T d1mv5a_ 156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITG-SGKHNEL 224 (242)
T ss_dssp HCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECC-CSCHHHH
T ss_pred cCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEEEE-ECCHHHH
Confidence 22 889992 22233322 27899999999999865 99999999999986 5676654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.4e-23 Score=204.82 Aligned_cols=174 Identities=21% Similarity=0.271 Sum_probs=112.8
Q ss_pred ceEEeeeEEEeC--CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 59 DIKVENFSLSAK--GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 59 ~I~i~nls~~~~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
+|+++|+||+|+ ++++|+|+||+|.+|+++|||||||||||||+++|+|... |..+.
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~lr~~ 78 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQ 78 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHH
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC--CCCCEEEECCEEecccchhhhhce
Confidence 589999999994 4579999999999999999999999999999999999643 33334
Q ss_pred EEEEeccccCCchhHHHHHHhccH--HHHHHHHHHHHHhhccCCChHHHHHHHHHHHh------------ccCCCChHHH
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSADK--NRVKLLKECSKLERDESGDNQLRLTEVYDELK------------SIEADAAEPR 183 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~~--~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~------------~~~~~~~~~~ 183 (568)
+.|+.|+......+..+.+..... ....+.... +...+.+.+. .-...+++++
T Consensus 79 i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~ 145 (241)
T d2pmka1 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-------------KLAGAHDFISELREGYNTIVGEQGAGLSGGQR 145 (241)
T ss_dssp EEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHH-------------HHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHH
T ss_pred EEEEecccccCCccccccccccCccccHHHHHHHH-------------HHHhhHHHHHhhhcchhhhcCCCCCccCHHHH
Confidence 345555544333333332221100 000000000 0000011111 1123588899
Q ss_pred HHHHHHhcCCCc----cCCCch---------HHHHHHhc--cCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhH
Q psy16366 184 ARRILAGLGFTT----IYIPSS---------RVHEIMRT--WKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTL 248 (568)
Q Consensus 184 ~~~~L~~lg~~~----L~~ePn---------~L~~~l~~--~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~ 248 (568)
+|..|+..-+.. ++|||. .+.+.+++ .++|+|+||||++++. .||+|++|++|+|+.+ |+++.
T Consensus 146 QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~-G~~~e 223 (241)
T d2pmka1 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQ-GKHKE 223 (241)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEE-ECHHH
T ss_pred HHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE-CCHHH
Confidence 998887754443 889992 22333332 2679999999999885 5999999999999874 66665
Q ss_pred H
Q psy16366 249 F 249 (568)
Q Consensus 249 ~ 249 (568)
.
T Consensus 224 l 224 (241)
T d2pmka1 224 L 224 (241)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.88 E-value=1.3e-23 Score=206.63 Aligned_cols=177 Identities=19% Similarity=0.269 Sum_probs=112.4
Q ss_pred ceEEeeeEEEeCCc--eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 59 DIKVENFSLSAKGV--ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 59 ~I~i~nls~~~~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
.|+++|+||+|+++ ++|+|+||+|.+|+++|||||||||||||+++|+|... |..+.
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC--CCccEEEECCcccchhhhhhhhhe
Confidence 69999999999653 69999999999999999999999999999999999643 33333
Q ss_pred EEEEeccccCCchhHHHHHHhc---cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHH----h-----ccCCCChHHHHH
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSA---DKNRVKLLKECSKLERDESGDNQLRLTEVYDEL----K-----SIEADAAEPRAR 185 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~---~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el----~-----~~~~~~~~~~~~ 185 (568)
+.|+.|+......+....+.-. ......+.... .. . .+.+..+.+ + .....++++++|
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~-~~-----~----~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQR 160 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA-RM-----A----YAMDFINKMDNGLDTIIGENGVLLSGGQRQR 160 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHH-HT-----T----TCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHH-HH-----H----hHHHHHHhccccchhhhcCCCCCcCHHHHHH
Confidence 3455555443333332222110 00000000000 00 0 001111111 1 112358888888
Q ss_pred HHHHhcCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 186 RILAGLGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 186 ~~L~~lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
..|+..-+.. ++|||. .+.+.++++ ++|+|+||||++.+. .||+|++|++|+|+.. |+++..
T Consensus 161 vaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~-G~~~eL 237 (253)
T d3b60a1 161 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVER-GTHSEL 237 (253)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 7776643322 889992 333333332 789999999999885 6999999999999875 666554
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.87 E-value=1.3e-22 Score=199.29 Aligned_cols=181 Identities=16% Similarity=0.210 Sum_probs=114.2
Q ss_pred ceEEeeeEEEeCC--ceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCce-------------------
Q psy16366 59 DIKVENFSLSAKG--VELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSID------------------- 117 (568)
Q Consensus 59 ~I~i~nls~~~~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~------------------- 117 (568)
.|+++|+||+|++ +++|+|+||+|.+|+++|||||||||||||+++|+|...| ..+.
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEEGGGSCHHHHHHT
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCEEcccCCHHHhhhe
Confidence 5999999999965 5799999999999999999999999999999999996432 2333
Q ss_pred EEEEeccccCCchhHHHHHHhcc--HHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-----ccCCCChHHHHHHHHHh
Q psy16366 118 LLYCEQEVEASDDSAVNIVLSAD--KNRVKLLKECSKLERDESGDNQLRLTEVYDELK-----SIEADAAEPRARRILAG 190 (568)
Q Consensus 118 i~~~~qe~~~~~~~~~~~v~~~~--~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-----~~~~~~~~~~~~~~L~~ 190 (568)
+.|+.|+......+..+.+.-.. .....+.+..... .+ .+.+..+.+-++ .-...++++++|..++.
T Consensus 94 i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~-~l-----~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 94 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMA-NA-----HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHT-TC-----HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred eeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHh-CC-----HHHHHhccccccchhcCCCCCcCHHHHHHHHHHH
Confidence 45566665544444444432110 0001111100000 00 000000000011 11125888888877766
Q ss_pred cCCCc----cCCCch---------HHHHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHH
Q psy16366 191 LGFTT----IYIPSS---------RVHEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLF 249 (568)
Q Consensus 191 lg~~~----L~~ePn---------~L~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~ 249 (568)
.-+.. ++|||. .+.+.+..+ +.|+|+||||++.+. .||+|++|++|+|+.. |+++..
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~-G~~~eL 239 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVET-GTHREL 239 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEE-ECHHHH
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 53332 889992 333444322 679999999999885 5999999999999874 666554
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.3e-22 Score=195.38 Aligned_cols=176 Identities=18% Similarity=0.190 Sum_probs=115.4
Q ss_pred cceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCchhHHHHHH
Q psy16366 58 VDIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDDSAVNIVL 137 (568)
Q Consensus 58 ~~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~~~~~~v~ 137 (568)
+.|+++|++.++ .|+++||+|++||++||+||||||||||+++|+|. .|..+.+.+.++++.......+....
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl---~~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM---TSGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS---CCCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC---CCCceEEEECCEECCcCCHHHHHhhc
Confidence 568899997654 69999999999999999999999999999999995 46677887777766443322221110
Q ss_pred hc---------cHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCC--------
Q psy16366 138 SA---------DKNRVKLLKECSKLERDESGDNQLRLTEVYDELK-------SIEADAAEPRARRILAGLGF-------- 193 (568)
Q Consensus 138 ~~---------~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~-------- 193 (568)
.. .......+ .+. .......+.+.++.+.+. .....++++++|..++..-+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~----~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p 149 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYL----TLH-QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANP 149 (231)
T ss_dssp EEECSCCCCCSSCBHHHHH----HHH-CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCT
T ss_pred eeeeccccCCccccHHHHh----hhc-cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCC
Confidence 00 00000000 000 011112344455555432 22346788887766654321
Q ss_pred C-c--cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 194 T-T--IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 194 ~-~--L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
. . ++|||. .+.++ ++.+.|||+||||++++..+||||++|++|+++.. |+.+
T Consensus 150 ~p~llllDEPt~gLD~~~~~~i~~~i~~l-~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~-G~~~ 217 (231)
T d1l7vc_ 150 AGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS-GRRE 217 (231)
T ss_dssp TCCEEEESSCSTTCCHHHHHHHHHHHHHH-HHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCC-SBHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHH-HhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEE-CCHH
Confidence 1 1 889992 34444 34589999999999999999999999999999875 4443
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.85 E-value=1.8e-21 Score=188.40 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=112.3
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCCch--hHHHHH
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEASDD--SAVNIV 136 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~~~--~~~~~v 136 (568)
.+++ ++..+|+...+ |+||++. ||+++|+||||||||||+|+|+|... |..+.+.+.+.++..... ..+..+
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHHHcCceee
Confidence 3567 56888887665 8999995 78999999999999999999999743 445555554444422111 011112
Q ss_pred HhccHHHHHHHHHHHHHhh-ccCCC---hHHHHHHHHHHHh-------ccCCCChHHHHHHHHHhcCCCc----cCCCch
Q psy16366 137 LSADKNRVKLLKECSKLER-DESGD---NQLRLTEVYDELK-------SIEADAAEPRARRILAGLGFTT----IYIPSS 201 (568)
Q Consensus 137 ~~~~~~~~~l~~~~~~l~~-~~~~~---~~~~l~~v~~el~-------~~~~~~~~~~~~~~L~~lg~~~----L~~ePn 201 (568)
++... ...-+...+.+.. +.... ...+..++.+.+. .....++++++|..++..-... ++|||.
T Consensus 76 ~Q~~~-l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt 154 (240)
T d2onka1 76 PQDYA-LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp CSSCC-CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred ccchh-hcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence 21110 0000000000100 11111 1233444444332 1234578888888877654432 889992
Q ss_pred -------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChh
Q psy16366 202 -------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFT 247 (568)
Q Consensus 202 -------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~ 247 (568)
.+.++.++.+.|+|+||||++++..+||||++|++|+++.+ |+.+
T Consensus 155 s~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~-G~~~ 212 (240)
T d2onka1 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEK-GKLK 212 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEE-ecHH
Confidence 45566667799999999999999999999999999999875 4443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.84 E-value=2.2e-21 Score=193.51 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=110.1
Q ss_pred eCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCC----CceEEEEeccccCCchhHHHHHHhc---cH
Q psy16366 69 AKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPS----SIDLLYCEQEVEASDDSAVNIVLSA---DK 141 (568)
Q Consensus 69 ~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~----~~~i~~~~qe~~~~~~~~~~~v~~~---~~ 141 (568)
+.|+++|+|+||+|.+||++|||||||||||||+++|+|...|..+ .+.+.|+.|.....+.+..+.+.-. +.
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 125 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDE 125 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEEHHHHHTTTSCCCH
T ss_pred CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCceeeccccccccccc
Confidence 4789999999999999999999999999999999999997433211 2357788888766555544444321 11
Q ss_pred HHH-HHHHHHHHHhhccCCChHHHHHHHHHHHh-----ccCCCChHHHHHHHHHhcCCCc----cCCCch---------H
Q psy16366 142 NRV-KLLKECSKLERDESGDNQLRLTEVYDELK-----SIEADAAEPRARRILAGLGFTT----IYIPSS---------R 202 (568)
Q Consensus 142 ~~~-~l~~~~~~l~~~~~~~~~~~l~~v~~el~-----~~~~~~~~~~~~~~L~~lg~~~----L~~ePn---------~ 202 (568)
... ...+... + ...+..+.+.+. .....++++++|..|+..-+.. ++|||. .
T Consensus 126 ~~~~~~~~~~~-~--------~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~ 196 (281)
T d1r0wa_ 126 YRYKSVVKACQ-L--------QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 196 (281)
T ss_dssp HHHHHHHHHTT-C--------HHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHH
T ss_pred hHHHHHHHHHH-h--------HHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHH
Confidence 111 0111000 0 000000000011 1113588899988887654433 889992 2
Q ss_pred H-HHHHhcc--CCeEEEEeCCHHHHHhhhceeeEEcCCeeeEEcCChhHHH
Q psy16366 203 V-HEIMRTW--KKTLLVVSHDQSFLNNICTDIIHLDMKKLFYYKGNFTLFK 250 (568)
Q Consensus 203 L-~~~l~~~--~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~~g~y~~~~ 250 (568)
+ +.++..+ ++|+|+|||+++.+. .||||++|++|+++.+ |+++...
T Consensus 197 i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~~~-Gt~~eL~ 245 (281)
T d1r0wa_ 197 VFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSYFY-GTFSELQ 245 (281)
T ss_dssp HHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEEEE-ECHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEEEE-CCHHHHh
Confidence 2 2323332 579999999999885 6999999999999865 7777654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=9.2e-20 Score=173.01 Aligned_cols=159 Identities=18% Similarity=0.271 Sum_probs=98.0
Q ss_pred ceEEeeeEEEeCCceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEE--------------EEecc
Q psy16366 59 DIKVENFSLSAKGVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLL--------------YCEQE 124 (568)
Q Consensus 59 ~I~i~nls~~~~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~--------------~~~qe 124 (568)
-|+++|+|++|+ +++|+|+||+|++|+++||+||||||||||+++|+|... |..+.+. +++|+
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~~~~~i~~~~~~ 78 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITKVKGKIFFLPEE 78 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehhHhcCcEEEEeec
Confidence 378999999994 689999999999999999999999999999999999643 3334443 44444
Q ss_pred ccCCchhHHHHHHhccHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHh------ccCCCChHHHHHHHHHhcCCCc---
Q psy16366 125 VEASDDSAVNIVLSADKNRVKLLKECSKLERDESGDNQLRLTEVYDELK------SIEADAAEPRARRILAGLGFTT--- 195 (568)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~v~~el~------~~~~~~~~~~~~~~L~~lg~~~--- 195 (568)
........+... +.....+... ......+.+.++.+. .++..+.+++.|..++..-...
T Consensus 79 ~~~~~~~t~~~~----------l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~l 146 (200)
T d1sgwa_ 79 IIVPRKISVEDY----------LKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI 146 (200)
T ss_dssp CCCCTTSBHHHH----------HHHHHHHTTC--CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE
T ss_pred ccCCCCcCHHHH----------HHHHHHhcCC--ccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCE
Confidence 332221111111 1111111110 111122223333322 2334678888887776654433
Q ss_pred -cCCCch-------------HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcC
Q psy16366 196 -IYIPSS-------------RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDM 236 (568)
Q Consensus 196 -L~~ePn-------------~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~ 236 (568)
++|||. .|.++.++.+.+||..+||+ ++||++.+|+.
T Consensus 147 lllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 147 YVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred EEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 889991 35555555455566666664 46999998864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.72 E-value=4.9e-20 Score=170.35 Aligned_cols=166 Identities=15% Similarity=0.170 Sum_probs=108.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCC------eeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPR------LRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
+++|+||||||||||+++|+|.++|..|.+..... .+.++...... ...+. ......... ...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~-----~~~ 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE----GKKKI--FSSKFFTSK-----KLV 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT----CCEEE--EEETTCCCS-----SEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhh----HHHHH--Hhhhhhhhh-----hhh
Confidence 58999999999999999999999999998864321 11122111100 00000 000000000 000
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC--CCHHHHHHHHHHHHhcCceEEEEecchHHHHh
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN--LDIESIDALAEAIKNYQGGVILVSHDERLIRE 515 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~--LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~~ 515 (568)
..++.. .....+|+|+++|.++++++..+|++|++|||+.. .+......+.+++++.+.+||+++|+... ..
T Consensus 71 ~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-~~ 144 (178)
T d1ye8a1 71 GSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-HP 144 (178)
T ss_dssp TTEEEC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-SH
T ss_pred hhhhcC-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-HH
Confidence 011111 11235899999999999999999999999997544 45677888888888888999999999865 45
Q ss_pred hCceEEEEECCeEEEEc-CCHHHHHHHHHHHH
Q psy16366 516 TDCELWALEKKNIRKFN-GDFDDYREKLLTSL 546 (568)
Q Consensus 516 ~~~~i~~l~~g~i~~~~-g~~~~~~~~~~~~~ 546 (568)
++++++.+.+|+++... .+.+.+.+++++.+
T Consensus 145 ~~~~i~~~~~~~i~~v~~~nrd~~~~~i~~~l 176 (178)
T d1ye8a1 145 LVKEIRRLPGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp HHHHHHTCTTCEEEECCTTTTTTHHHHHHHHS
T ss_pred hhceEEEEeCCEEEEECCccHHHHHHHHHHHH
Confidence 67888889999987653 34455555555544
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=9.5e-10 Score=109.10 Aligned_cols=76 Identities=25% Similarity=0.352 Sum_probs=61.8
Q ss_pred CCCCCCHhHHHHHHHHHH----HccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHHHhhCceEEE-
Q psy16366 450 PIRDLSGGQKARVALAEL----TLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLIRETDCELWA- 522 (568)
Q Consensus 450 ~~~~LSgGqkqRv~lA~a----l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i~~~~~~i~~- 522 (568)
.+..+|+|||+.+.++.. ....|.++++|||-+||+|..+..|.+.|++.. .-||++||...++.. +|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh-cccEEEE
Confidence 456899999998777664 445679999999999999999999999998763 469999999999975 467755
Q ss_pred -EECC
Q psy16366 523 -LEKK 526 (568)
Q Consensus 523 -l~~g 526 (568)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 4455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=8.2e-09 Score=106.27 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=61.2
Q ss_pred CCCCCCCHhHHHHHHHHHHH----ccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC---ceEEEEecchHHHHhhCceEE
Q psy16366 449 IPIRDLSGGQKARVALAELT----LNNPDILILDEPTNNLDIESIDALAEAIKNYQ---GGVILVSHDERLIRETDCELW 521 (568)
Q Consensus 449 ~~~~~LSgGqkqRv~lA~al----~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~---~tvi~vsHd~~~i~~~~~~i~ 521 (568)
.++..||||||.+++||-.+ ..+++++|||||++|||+..+..+.++|.+.. .-+|+|||+..++.. +|++|
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHh-cccEE
Confidence 46678999999998876543 56778999999999999999999999997652 359999999998865 67776
Q ss_pred EE
Q psy16366 522 AL 523 (568)
Q Consensus 522 ~l 523 (568)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.72 E-value=8.5e-10 Score=100.25 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHHhccCCeEEEEeCCHHHHHhhhceeeEEcCCeeeEE-cCChhH
Q psy16366 202 RVHEIMRTWKKTLLVVSHDQSFLNNICTDIIHLDMKKLFYY-KGNFTL 248 (568)
Q Consensus 202 ~L~~~l~~~~~tvlvVSHd~~~l~~v~d~ii~L~~g~l~~~-~g~y~~ 248 (568)
+|.++++..+.|+|+++|+.+. ..+|++++.+.+|+++.. ..|++.
T Consensus 121 ~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~~v~~~nrd~ 167 (178)
T d1ye8a1 121 LVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLIELTPENRDV 167 (178)
T ss_dssp HHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEEECCTTTTTT
T ss_pred HHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEEEECCccHHH
Confidence 5677778778999999999764 568999999999998754 334443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.37 E-value=4.1e-06 Score=78.99 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=36.5
Q ss_pred HccCCCeEEEeCCCCCCCHHHHH----HHHHHHHhcCceEEEEecchHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESID----ALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~----~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
.+.+..++|+||+..|=++..-. ++.+.|.+.+..++++||..++..
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 34556699999999999996644 455556666778999999988765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=6.3e-06 Score=78.22 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=32.2
Q ss_pred HccCCCeEEEeCCCCCCCHHHHHHHH----HHHHhc-CceEEEEecchHHHH
Q psy16366 468 TLNNPDILILDEPTNNLDIESIDALA----EAIKNY-QGGVILVSHDERLIR 514 (568)
Q Consensus 468 l~~~p~lLlLDEPt~~LD~~~~~~l~----~~l~~~-~~tvi~vsHd~~~i~ 514 (568)
.+.+..++|+||+..|=++..-..+. +.+... ...+|++||..++..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 34556699999999999986655443 333333 356899999876543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=4.2e-06 Score=75.75 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=28.7
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|.+.++.+.+| ..+|+|+|||||||||.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 467788888776 899999999999999999973
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=4.4e-06 Score=75.60 Aligned_cols=35 Identities=34% Similarity=0.342 Sum_probs=28.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-+.+.+|.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 367777777766 89999999999999999986443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.16 E-value=9.1e-05 Score=65.02 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.0001 Score=64.70 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876553
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.11 E-value=9.7e-05 Score=65.24 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.|+.+.|+||+||||||+++.|+..
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999974
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=9.2e-05 Score=66.66 Aligned_cols=26 Identities=35% Similarity=0.598 Sum_probs=23.8
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
|.+++|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987664
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.00014 Score=65.40 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
|..+.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999864
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.00017 Score=67.40 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
+|...+++|++|+|||||+|.|.|...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4788999999999999999999998777778775
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.03 E-value=0.00014 Score=64.11 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|-++.|+|++||||||+.+.|+-.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999953
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.03 E-value=0.00014 Score=70.62 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
..+|||||||||||+|.+|+-
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.02 E-value=0.00013 Score=64.50 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|+|+|+.|||||||++.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999964
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=6.4e-05 Score=66.61 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
.+.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999887654443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.00015 Score=64.14 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++.|+||+|+|||||++.|+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999964
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.93 E-value=0.00019 Score=63.25 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.|.++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999998765
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00017 Score=63.34 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.+..+.|+|++||||||+++.|+..
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999974
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.90 E-value=0.0018 Score=61.66 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=27.1
Q ss_pred eeeeeeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 351 LLEKVNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 351 il~~vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
-|+++-..+.+|+.+.|.|+.|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3454444578999999999999999999877653
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00023 Score=61.43 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|+||+||||||+.+.|+-.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999964
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00016 Score=63.79 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
+++|+|++|||||||++-|...+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999988887764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.78 E-value=0.00032 Score=61.83 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
.++|+|++|||||||+..|..... ..+..+..+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~--~~g~~v~vik~ 37 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV--REGWRVGTVKH 37 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH--hCCCeEEEEEe
Confidence 689999999999999998875321 23445554443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.77 E-value=0.00015 Score=67.89 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELR 394 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~ 394 (568)
+|..++++|++|+|||||+|.|.|...-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4778999999999999999999998777778775
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.76 E-value=0.00031 Score=61.99 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..|+|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.76 E-value=0.00037 Score=61.10 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+.|.|++||||||+++.|+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999974
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.011 Score=55.60 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=20.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
-+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.74 E-value=0.00028 Score=61.84 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|+|+.||||||+++.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.72 E-value=0.00038 Score=61.12 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|=.+.|+|++||||||+++.|+-.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999964
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.72 E-value=0.0003 Score=63.09 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+||.|++|||||||++.|+-
T Consensus 24 iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00033 Score=61.44 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00041 Score=69.97 Aligned_cols=27 Identities=30% Similarity=0.683 Sum_probs=22.5
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
+.+..+.+.+|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444556699999999999999999984
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.64 E-value=0.00039 Score=61.11 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998655
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.63 E-value=0.00047 Score=60.49 Aligned_cols=27 Identities=22% Similarity=0.489 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++|-.++|.||.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.61 E-value=0.00047 Score=60.12 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|+||+||||||+++.|+..
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999964
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.61 E-value=0.00045 Score=59.39 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.|+|++|||||||++.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00031 Score=62.95 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|-++.|+|++||||||+.+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999853
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00051 Score=59.12 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.45 E-value=0.0047 Score=57.10 Aligned_cols=145 Identities=11% Similarity=0.122 Sum_probs=74.8
Q ss_pred EeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHH--hcCCCHHHHHHH
Q psy16366 359 LDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMK--LFNLPYEKSRRQ 436 (568)
Q Consensus 359 i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~--~~~~~~~~~~~~ 436 (568)
|.+|+.+.|.|++|||||||+.-++-...- .| ..+.|+.- +++....... .++.+....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~-~~-------~~~~~is~--------e~~~~~~~~~~~~~~~~~~~~--- 83 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACA-NK-------ERAILFAY--------EESRAQLLRNAYSWGMDFEEM--- 83 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-TT-------CCEEEEES--------SSCHHHHHHHHHTTSCCHHHH---
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-hc-------cccceeec--------cCCHHHHHHHHHHcCCChHHH---
Confidence 789999999999999999998666543211 12 12344432 2344443322 223333321
Q ss_pred HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCC---CCHHH----HHHHHHHHHhcCceEEEEecc
Q psy16366 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNN---LDIES----IDALAEAIKNYQGGVILVSHD 509 (568)
Q Consensus 437 L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~---LD~~~----~~~l~~~l~~~~~tvi~vsHd 509 (568)
...+....... ........+.-.......--.+|+++++|--+.- .+... ...+...+++.+.++++++|-
T Consensus 84 -~~~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 161 (242)
T d1tf7a2 84 -ERQNLLKIVCA-YPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 161 (242)
T ss_dssp -HHTTSEEECCC-CGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred -hhcCceEEEEe-ecchhhHHHHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 12222111111 1122233222222222233457999999864433 24433 334445556778888888874
Q ss_pred h----------HHHHhhCceEEEEE
Q psy16366 510 E----------RLIRETDCELWALE 524 (568)
Q Consensus 510 ~----------~~i~~~~~~i~~l~ 524 (568)
. ..+..++|-++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 162 DQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp SSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EeeccccccCCcceeeecceEEEEE
Confidence 2 12345677776664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0008 Score=61.84 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.|..+.|+||||+|||||.+.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999998875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.43 E-value=0.00079 Score=59.38 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG 107 (568)
..++|.|+.||||||+++.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.42 E-value=0.00077 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
.+|+|.|+.||||||+++.|+-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999998766543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.40 E-value=0.00084 Score=58.69 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998774
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.40 E-value=0.00077 Score=62.72 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|...+++|+||+|||||++.|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCCHHHHHHhhcch
Confidence 4788999999999999999999875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.00082 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.|.++.|+||+|||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999876543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.00068 Score=60.60 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|||.||.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999986654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.39 E-value=0.00079 Score=57.79 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.1
Q ss_pred CEEEEECCCCChHHHHHHHHhc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G 384 (568)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999997753
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.37 E-value=0.00068 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++|+||.||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.35 E-value=0.00082 Score=58.46 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=21.8
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++.|+||.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987653
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00085 Score=61.47 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+||.|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.00081 Score=60.64 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.26 E-value=0.00066 Score=59.90 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.26 E-value=0.00097 Score=58.52 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|+|+.||||||+.+.||..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.0007 Score=60.55 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.013 Score=51.65 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.-..+.++|+.||||||+.+-++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.23 E-value=0.00099 Score=59.94 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|+||+|||||||++.|+..
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999763
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.0011 Score=57.01 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|||++|+|||||++.|.+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~ 25 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRL 25 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.22 E-value=0.00084 Score=59.03 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+|+.||||||+.+.|+-.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999964
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.18 E-value=0.0011 Score=56.85 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|+.|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0011 Score=57.00 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.17 E-value=0.0012 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|||+.|||||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.15 E-value=0.0014 Score=58.80 Aligned_cols=24 Identities=42% Similarity=0.587 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+|=++.|+||.||||||+.+.|+-
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999999995
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.14 E-value=0.00093 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.001 Score=59.99 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 6999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.13 E-value=0.0012 Score=58.28 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
-+.|+|++||||||+.+.||-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.11 E-value=0.0012 Score=59.58 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy16366 88 YGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG 107 (568)
+.|+||||||||||++.|+-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999975
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.09 E-value=0.0014 Score=58.08 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+++.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0013 Score=59.23 Aligned_cols=23 Identities=43% Similarity=0.728 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhcCcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+.|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999976643
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.04 E-value=0.0014 Score=60.73 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0017 Score=58.07 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=21.4
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
...+.|+||+|+|||||++.|....
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999887543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.02 E-value=0.0012 Score=62.25 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|+||.|||||||++.|++.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.0021 Score=57.57 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|.+|+.+.|.||+|||||||+..++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78899999999999999999998875
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0017 Score=57.00 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++|+|+.|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.96 E-value=0.0015 Score=56.38 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.|||||||++.+++-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.95 E-value=0.0015 Score=58.80 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-++.|+||.||||||+.+.|+-.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999953
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.94 E-value=0.0012 Score=59.16 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+++.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.93 E-value=0.002 Score=57.78 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++|-+++|+||.||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999999999843
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0017 Score=59.33 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++||.|+.|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887655
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.92 E-value=0.0019 Score=56.79 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.92 E-value=0.0018 Score=57.53 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++||+|+.|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999885
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.91 E-value=0.0023 Score=62.86 Aligned_cols=40 Identities=30% Similarity=0.438 Sum_probs=31.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
..|.-+.|+|+.||||||||++|.+. +|+...+..++...
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~---i~~~~rivtiEd~~ 203 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEF---IPKEERIISIEDTE 203 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGG---SCTTCCEEEEESSC
T ss_pred HhCCCEEEEeeccccchHHHHHHhhh---cccccceeeccchh
Confidence 34556899999999999999999984 66776776665443
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0017 Score=58.67 Aligned_cols=22 Identities=55% Similarity=0.727 Sum_probs=19.6
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++|+||+|||||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7799999999999999987654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.91 E-value=0.0015 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-|+|+|+.|+|||||++.|+|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.90 E-value=0.0017 Score=55.68 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.|||||||++.+++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0019 Score=58.19 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++.|+||.||||||+++.|+..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999974
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0022 Score=57.27 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.0021 Score=57.14 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++||+|..|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.003 Score=59.14 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=23.5
Q ss_pred eeEEEeC-CCEEEEECCCCCcHHHHHHHHH
Q psy16366 78 ANLQIAS-GRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 78 isl~i~~-Ge~~gLvG~NGsGKSTLlr~La 106 (568)
-++.+.. +..+.|.|||.+||||+||.++
T Consensus 33 Ndi~l~~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 33 NPLNLSPQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEECCCceEEEEeccCchhhHHHHHHHH
Confidence 3455544 4678999999999999999986
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0023 Score=62.41 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=27.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
++||.|++|||||||.+.|.......+.+..+..+..+-
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~ 120 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeee
Confidence 589999999999999999986422223444555555553
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.83 E-value=0.0026 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+++|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999988643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.82 E-value=0.0013 Score=58.56 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
-|||+|+.++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0019 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
=.++|+|+.|+|||||++.|+|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.81 E-value=0.0022 Score=57.10 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+++.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999964
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.80 E-value=0.0021 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
+++|||+.|+|||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999998643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0023 Score=56.37 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.76 E-value=0.0021 Score=56.20 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.76 E-value=0.0022 Score=59.24 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 589999999999999999963
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.73 E-value=0.00095 Score=62.30 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|....++|+||+|||||++.|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred ccceEEEECCCCccHHHHHHhhccH
Confidence 4788999999999999999999985
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0024 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.-..+.++|++||||||+++.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.72 E-value=0.0021 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+++|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999998643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.72 E-value=0.0015 Score=58.13 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+||||+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998853
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.72 E-value=0.0025 Score=56.43 Aligned_cols=22 Identities=55% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+|+|+|+.|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0026 Score=57.06 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||.++.|+-.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.70 E-value=0.002 Score=57.05 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++|||+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.70 E-value=0.0025 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=20.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.+.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999998644
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0022 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
=+++|+|+.|+|||||++.|.|..
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.68 E-value=0.0027 Score=56.36 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0023 Score=57.83 Aligned_cols=22 Identities=32% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|+.|||||||++.|+|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.66 E-value=0.0026 Score=56.19 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997654
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.64 E-value=0.0019 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
|||+|+.|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999863
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.63 E-value=0.0028 Score=57.12 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++|..|||||||++.|+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999985
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0027 Score=57.11 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-.+++|+||.||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3469999999999999999998755
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.62 E-value=0.0025 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||..|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.61 E-value=0.0025 Score=57.14 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
++||+|+.||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.61 E-value=0.0025 Score=56.19 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999988764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.60 E-value=0.0024 Score=55.98 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.1
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.|+|+.||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998655
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.60 E-value=0.0022 Score=57.41 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.0025 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.58 E-value=0.0026 Score=56.13 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|.|++||||||+++.|+..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.57 E-value=0.003 Score=57.77 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|-||.||||||+++.|+-.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999999964
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.56 E-value=0.0017 Score=63.78 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=65.6
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCC-CCCCCCCHHHHHHHhcCCCHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGE-HLFPDDTPCEYLMKLFNLPYEKSRRQ 436 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~-~l~~~~~~~e~l~~~~~~~~~~~~~~ 436 (568)
-+..+..+.|.|+-||||||||+.|++.++|.. ++..+ .++.+ .+.......
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~---------rivti-Ed~~El~l~~~~~~~----------------- 214 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---------RIISI-EDTEEIVFKHHKNYT----------------- 214 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC---------CEEEE-ESSCCCCCSSCSSEE-----------------
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhccccc---------ceeec-cchhhhhcccccccc-----------------
Confidence 345566699999999999999999999987743 23333 22221 111110000
Q ss_pred HHhCCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHH
Q psy16366 437 LGMFGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513 (568)
Q Consensus 437 L~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i 513 (568)
.+ ..-...|-. =.|-.+|-++|+.+++.|--. .+... +.+++..-..+++.+.|--+-.
T Consensus 215 ----~~------~~~~~~~~~----~ll~~~lR~~pd~iivgEiR~---~ea~~-~l~a~~tGh~g~~tT~Ha~s~~ 273 (323)
T d1g6oa_ 215 ----QL------FFGGNITSA----DCLKSCLRMRPDRIILGELRS---SEAYD-FYNVLCSGHKGTLTTLHAGSSE 273 (323)
T ss_dssp ----EE------ECBTTBCHH----HHHHHHTTSCCSEEEESCCCS---THHHH-HHHHHHTTCSCEEEEECCSSHH
T ss_pred ----ee------ccccchhHH----HHHHHHhccCCCcccCCccCc---hhHHH-HHHHHHhcCCcEEEEECCCCHH
Confidence 00 001122321 235567778999999999963 45554 4566655444688888865433
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.55 E-value=0.0032 Score=56.71 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+.+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999964
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0033 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++|||..|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0032 Score=55.35 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.++|+|..|+|||||++.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999863
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.004 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.|.+|+++.|.||.|||||||+.-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999877664
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.0033 Score=55.83 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+||.||||||+++.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999963
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.003 Score=56.95 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.52 E-value=0.0021 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..+.++.|+||.||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999964
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.51 E-value=0.0048 Score=57.23 Aligned_cols=27 Identities=41% Similarity=0.594 Sum_probs=22.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
|+.+. ++.+.|.|||.+||||+||.++
T Consensus 30 di~~~-~~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 30 DLEMA-HELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHH
T ss_pred eEEeC-CcEEEEECCCccccchhhhhhH
Confidence 45554 4589999999999999999886
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0015 Score=57.61 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998853
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=95.49 E-value=0.05 Score=51.43 Aligned_cols=94 Identities=18% Similarity=0.277 Sum_probs=57.2
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQL 437 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L 437 (568)
.|+.|.++-|.||.|||||||.-.++...+-..| .+.|+.-+.. +. + + ++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~--------~v~yiDtE~~--~~----~-~---------------~a 102 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG--------TCAFIDAEHA--LD----P-V---------------YA 102 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSCC--CC----H-H---------------HH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCC--------EEEEEECCcc--CC----H-H---------------HH
Confidence 5689999999999999999999877765543223 3456654421 21 1 1 23
Q ss_pred HhCCCCCccccCCCCCCCHhHHHHHHHHHHHcc--CCCeEEEeCCCCCC
Q psy16366 438 GMFGLPSYAHTIPIRDLSGGQKARVALAELTLN--NPDILILDEPTNNL 484 (568)
Q Consensus 438 ~~~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~--~p~lLlLDEPt~~L 484 (568)
..+|++...- .+..-.-+|++ +.++..|+. +++++|+|=-++..
T Consensus 103 ~~~Gvd~d~i--~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 103 RALGVNTDEL--LVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp HHTTCCGGGC--EEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHhCCCchhE--EEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence 3445543211 11122335555 455566643 58999999988755
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.48 E-value=0.0021 Score=56.94 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+||+|+.|+|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999853
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.47 E-value=0.07 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.0
Q ss_pred CCEEEEECCCCChHHHHHHHHhc
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
..+++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998854
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.47 E-value=0.0031 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.46 E-value=0.0034 Score=57.97 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|.||+|+|||||+++|+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0035 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0019 Score=57.00 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|+|+|+.++|||||++.|+|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998864
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.42 E-value=0.0026 Score=57.15 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|-|+.|||||||++.|+..
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999974
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0038 Score=56.73 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|.||.||||||+.+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.0042 Score=57.89 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|.||+|+||||++++|+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.37 E-value=0.0033 Score=56.21 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
++||+|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.37 E-value=0.0034 Score=58.13 Aligned_cols=22 Identities=50% Similarity=0.629 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.+.||.|+|||||+++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHhc
Confidence 4899999999999999999964
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.37 E-value=0.0027 Score=57.11 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
..+.++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.36 E-value=0.0038 Score=55.39 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.34 E-value=0.0028 Score=56.89 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|+|-|+-|||||||++.|+..+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.33 E-value=0.004 Score=54.20 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.26 E-value=0.0049 Score=56.06 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+||+|..||||||+++.|.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999974
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.26 E-value=0.033 Score=51.53 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLI 513 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i 513 (568)
..|+|+||.=. |...+...|...|.+.. ..+|++|++..-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 45999999854 88899999999998864 3588888887544
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.25 E-value=0.0049 Score=54.71 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+||+|+-.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.23 E-value=0.0039 Score=60.71 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.-++|+||+|||||+|+|+||..
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhc
Confidence 445789999999999999999974
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.21 E-value=0.0046 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.20 E-value=0.0016 Score=56.36 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.20 E-value=0.0034 Score=58.98 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999999764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.17 E-value=0.0044 Score=53.92 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999987653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0047 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|+|.||.||||||+.+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999997644
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.005 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHcCC
Confidence 58899999999999999988653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.14 E-value=0.005 Score=54.50 Aligned_cols=23 Identities=48% Similarity=0.644 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+||.||||||+.+.|+.-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.11 E-value=0.0018 Score=56.07 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|+.|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.10 E-value=0.0049 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0031 Score=58.26 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.+++|-|+-||||||+++.|+..
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999964
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.10 E-value=0.0046 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++|+|..|+|||||+|.|.|.-
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0052 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+|.+|+|-|+.||||||+++.|+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999985
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.0048 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0053 Score=56.16 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=24.6
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++|-+|+|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.06 E-value=0.005 Score=56.71 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|.||+|+|||||+++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999964
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0056 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|.+|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987553
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.0064 Score=57.55 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
....-+.|.||.|||||+|+++||..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHH
Confidence 34456899999999999999999974
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.0051 Score=56.97 Aligned_cols=22 Identities=50% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|.||.|+|||||+++|++.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999974
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.98 E-value=0.0058 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.2
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
=+++|+||.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998644
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.98 E-value=0.0058 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++||+.|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999988764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.95 E-value=0.0068 Score=57.30 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRAL 110 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~ 110 (568)
.++|+|++|+|||||++.|.|...
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 489999999999999999999753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0061 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.3
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++.|+||-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998653
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.94 E-value=0.0057 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+.|-.+-|+|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999974
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0071 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.673 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999988753
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.0037 Score=57.68 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.5
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+.+|+|-|+-||||||++++|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.0063 Score=55.67 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
+|-+++|-|+.||||||+.+.|+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.0066 Score=55.67 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
=|.+|+.+.|.||.|||||||+..++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999999988864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.87 E-value=0.0059 Score=56.22 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=31.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecchHHH-HhhCceE
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLI-RETDCEL 520 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i-~~~~~~i 520 (568)
.+.++|+||- ..+-......|...+..... .+|++|+....+ ..+.+|.
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~ 160 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcc
Confidence 5679999994 34555667778888876643 567777666433 3333443
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0054 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
-|+|+|+.|||||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0064 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++.+.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999888753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.012 Score=51.35 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=22.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC-----cCCCccE
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE-----LTPNKGE 392 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~-----~~p~~G~ 392 (568)
+++|+|..|+|||||++-+.+- ..|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 4899999999999999877652 3455554
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.83 E-value=0.0063 Score=56.72 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++.|+||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 467899999999999999998875
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.83 E-value=0.0063 Score=55.27 Aligned_cols=21 Identities=43% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.83 E-value=0.0059 Score=57.39 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|.||.|||||+|+++||..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4889999999999999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0059 Score=59.91 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
-++||+||.|||||||+..|+..+.
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999986543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0082 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||+.|+|||||++.+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999877653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.77 E-value=0.0078 Score=55.01 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
.+.+++++||+|+||||.+-=|+-.+. ..| .+++++.-+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-------~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-------KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-------CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEEecc
Confidence 567899999999999997655555443 223 3577766543
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0077 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.74 E-value=0.007 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+|-++.|.|.+|||||||.+.|.-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999987433
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.0077 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+||+|..||||||.++.|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 5899999999999999999853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.0073 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++||+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.70 E-value=0.0066 Score=53.13 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.007 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.742 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999977653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0083 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999887653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.69 E-value=0.007 Score=52.87 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHhc
Q psy16366 365 VALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G 384 (568)
++++|+.|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999997764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.68 E-value=0.0061 Score=53.39 Aligned_cols=23 Identities=43% Similarity=0.652 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++++||+.|+|||||++.|.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.0078 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
-++|+|+.|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.0078 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++++||+.|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999988765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.62 E-value=0.0086 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999999865
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.61 E-value=0.0089 Score=55.53 Aligned_cols=24 Identities=46% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998653
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.61 E-value=0.0045 Score=59.49 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
.+||.|++||||||+.+.|..... ..++.+..++++-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~--~~~v~~~iI~~Ds 42 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR--REGVKAVSIEGDA 42 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH--HHTCCEEEEEGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh--hcCCCeEEEeCCC
Confidence 699999999999999999875210 1233445566653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.60 E-value=0.016 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=27.9
Q ss_pred eeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 73 ELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 73 ~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
..++..-+.+ .|.-+.|.|++|+|||||+-.|.-+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3466556666 6889999999999999999887643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.60 E-value=0.016 Score=51.38 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=25.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.++..-+.+ .|.=++|+|++|+|||||+-.|..+
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 344444433 4888999999999999999887754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.59 E-value=0.0084 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|..|+|||||++.+.+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999887643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.0084 Score=54.94 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccE
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGE 392 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~ 392 (568)
+|-+|+|-|+-||||||+.++|+-.+.. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCE
Confidence 6889999999999999999999877754 443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0083 Score=54.98 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|.+++|-|+.||||||+++.|+-.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999999853
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=0.0072 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.56 E-value=0.008 Score=55.11 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|.||.|+||||++++|+..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 789999999999999999853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.0086 Score=52.07 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 7999999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0091 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999988753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.0098 Score=51.89 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999999863
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.50 E-value=0.0093 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||..|+|||||++.+....
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~~ 28 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVEDS 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999988653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.0082 Score=55.14 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.47 E-value=0.0095 Score=51.82 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|..|+|||||++.+.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999887643
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.014 Score=51.04 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58899999999999999998754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.0094 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||..|+|||||++.+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999988653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.01 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 899999999999999888764
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0082 Score=58.87 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.-++||+|+.|+|||||+..|..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHH
Confidence 44899999999999999999975
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.0098 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++++||++|+|||||++.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999887653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.012 Score=50.96 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999986664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.011 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++++|+.|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999977654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.01 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|+.|+|||||++.+.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.30 E-value=0.0097 Score=52.65 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++|||...+|||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.0099 Score=52.07 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999987654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.27 E-value=0.01 Score=53.92 Aligned_cols=21 Identities=48% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.013 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||+.|+|||||++.+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999988754
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.26 E-value=0.0098 Score=55.87 Aligned_cols=21 Identities=52% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|.||.|||||+|+++|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 789999999999999999974
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.25 E-value=0.0089 Score=55.17 Aligned_cols=25 Identities=44% Similarity=0.825 Sum_probs=21.7
Q ss_pred EEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
+.+.||.|+|||||.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6799999999999999999876543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.25 E-value=0.012 Score=53.38 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=28.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQE 124 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe 124 (568)
|.+|+.+.|.|++|+|||||+.-++... .......++|+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~-~~~~~~~~~~~s~e 64 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNG-IIEFDEPGVFVTFE 64 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCccccccc
Confidence 7899999999999999999986654211 11223345665443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.01 Score=54.77 Aligned_cols=27 Identities=26% Similarity=0.180 Sum_probs=24.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
=|.+|+.+.|.|++|||||||+..++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999998873
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.011 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|++|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999988654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.23 E-value=0.0092 Score=56.64 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...-+.|.||+|||||+|+++|++.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcchhHHHHHHHH
Confidence 4455999999999999999999985
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.011 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||+.|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999888764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.22 E-value=0.011 Score=53.92 Aligned_cols=38 Identities=29% Similarity=0.174 Sum_probs=26.3
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~ 407 (568)
..++.++||||+||||.+--|+-.+. ..| .+++++.-+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~-~~g-------~kV~lit~D 47 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK-GKG-------RRPLLVAAD 47 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HTT-------CCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEecc
Confidence 45789999999999997766665543 223 356766654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.21 E-value=0.013 Score=53.47 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 84 SGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 84 ~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
++..+++|||+|+||||.+-=||.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999876555554
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.21 E-value=0.012 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|+|-|.-||||||+++.|+..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.0098 Score=57.71 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=28.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
++||.|+.|||||||.+.|..++.-..+ ..++..++++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~------~~~v~~Is~D~ 120 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE------HRRVELITTDG 120 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT------CCCEEEEEGGG
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC------CCceEEEeeee
Confidence 5899999999999999999887752211 12456666664
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.0098 Score=51.95 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=22.6
Q ss_pred EEEEECCCCChHHHHHHHHhcC-----cCCCccEE
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE-----LTPNKGEL 393 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~-----~~p~~G~i 393 (568)
+++|+|..|+|||||++-+.+- ..|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 4999999999999999876542 24555543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.19 E-value=0.013 Score=54.04 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=29.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEec
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQ 123 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~q 123 (568)
|.+|..+.|.|++|||||||+.-|+-... -.+..+.|+.-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~--~~~~~~~~is~ 62 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENAC--ANKERAILFAY 62 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEES
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHH--Hhccccceeec
Confidence 78999999999999999999988875321 22334555543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.19 E-value=0.011 Score=53.98 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
|.+|+.+.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999998874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.15 E-value=0.0075 Score=55.40 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=25.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecC
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~ 407 (568)
+..+++++||||+||||.+-=|+-.+. ..| .+++++.-+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-------~kV~lit~D 48 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-------KSVVLAAAD 48 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-------CCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CceEEEeec
Confidence 344799999999999997644454332 122 357777654
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.013 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.8
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.|.+|+++.|.||.|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999999876653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.013 Score=51.09 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=20.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 48899999999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.0094 Score=55.27 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|.||.|+||||++++++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999853
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.0076 Score=55.23 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=25.6
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQH 407 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~ 407 (568)
.+++++||||+||||.+-=|+-.+. ..| .+++++.-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~D 46 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG-------KSVMLAAGD 46 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT-------CCEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEecc
Confidence 5799999999999997655555443 233 357776544
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.09 E-value=0.012 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=23.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
+.+|+.+.|.||.|||||||+-.++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7889999999999999999998775
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.09 E-value=0.012 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.713 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.013 Score=50.81 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.06 E-value=0.012 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.06 E-value=0.012 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.012 Score=53.87 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+.|.||.|+|||||+++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 789999999999999999964
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.016 Score=50.64 Aligned_cols=23 Identities=48% Similarity=0.842 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+++|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 38899999999999999998754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.013 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++++|+.|+|||||++.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999988753
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.0084 Score=57.49 Aligned_cols=30 Identities=40% Similarity=0.503 Sum_probs=26.8
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 78 isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.=+.|-+|++.+|+|+.|+|||||+..|+.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 346788999999999999999999999985
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.99 E-value=0.014 Score=50.92 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++|.+++|.|+=|||||||.|.++.-+-
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 5799999999999999999999876553
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.014 Score=50.89 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+++-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988763
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.016 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999888653
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.98 E-value=0.012 Score=55.54 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|.||.|||||+|+++|+..
T Consensus 40 giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEecCCCCCchHHHHHHHHH
Confidence 4899999999999999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.96 E-value=0.0086 Score=52.87 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.94 E-value=0.0078 Score=53.15 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.|.+..
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.93 E-value=0.013 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+.++.|.||.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45679999999999999999886543
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.015 Score=50.26 Aligned_cols=21 Identities=14% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.91 E-value=0.013 Score=53.84 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.1
Q ss_pred EEEEECCCCChHHHHHHHH-hcCcCCCccE
Q psy16366 364 RVALVGPNGIGKSTFLNLL-KGELTPNKGE 392 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l-~G~~~p~~G~ 392 (568)
++.|+|++|+|||||++-+ .+...||-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 5899999999999999765 5666788884
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.91 E-value=0.014 Score=55.90 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~La 106 (568)
++||.|+.|||||||.+.|.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHH
Confidence 58999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.016 Score=50.17 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++-+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999877653
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.014 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68899999999999999877643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.015 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||++|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999776643
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.014 Score=50.75 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.84 E-value=0.016 Score=58.42 Aligned_cols=22 Identities=50% Similarity=0.773 Sum_probs=20.6
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
|+|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.82 E-value=0.025 Score=51.09 Aligned_cols=106 Identities=8% Similarity=0.070 Sum_probs=67.3
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 441 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~ 441 (568)
+.-+.+.||+|+||||+.+.++..+.-..- .++. +-++ .+ + .....-+.+|++...+.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~---~h~D--~~~i--~~------~---------~~~I~Id~IR~i~~~~~ 72 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPP---KASD--VLEI--DP------E---------GENIGIDDIRTIKDFLN 72 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC---CTTT--EEEE--CC------S---------SSCBCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhcccc---CCCC--EEEE--eC------C---------cCCCCHHHHHHHHHHHh
Confidence 446889999999999999998875421100 0000 1111 01 0 01234456777666654
Q ss_pred CCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecchHHH
Q psy16366 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQ--GGVILVSHDERLI 513 (568)
Q Consensus 442 l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd~~~i 513 (568)
..+.. .+.+|+|+|| .-.|...+..+|.+.|.+.. ..+|++|++..-+
T Consensus 73 ~~~~~-----------------------~~~KviIId~-ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 73 YSPEL-----------------------YTRKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SCCSS-----------------------SSSEEEEETT-GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred hCccc-----------------------CCCEEEEEeC-ccccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 43211 2368999999 56788899999999999874 3578888887643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.81 E-value=0.013 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.016 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||+.|+|||||++-+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998753
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.013 Score=51.47 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999887654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.016 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++++||+.|+|||||++.+.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999988543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.75 E-value=0.014 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|||..|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.74 E-value=0.016 Score=54.74 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=37.0
Q ss_pred CceeeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccc
Q psy16366 71 GVELFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEV 125 (568)
Q Consensus 71 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~ 125 (568)
|-+-|+++..-+.+|+.+.|.|++|+|||||+.-|+-.. ..-.+..++++.-|.
T Consensus 21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~-a~~~g~~v~~~s~E~ 74 (277)
T d1cr2a_ 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAMLEE 74 (277)
T ss_dssp SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHH-HHTSCCCEEEEESSS
T ss_pred CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhh-hhhcccceeEeeecc
Confidence 334455544347899999999999999999998887421 122344667766553
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.028 Score=48.79 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.015 Score=50.84 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=17.6
Q ss_pred EEEECCCCChHHHHHHHHhc
Q psy16366 365 VALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G 384 (568)
++|+|+.|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999976654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.72 E-value=0.018 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLL 382 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l 382 (568)
.|++|+++.|.|++|+|||||+--+
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 3789999999999999999997543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.70 E-value=0.013 Score=53.99 Aligned_cols=22 Identities=41% Similarity=0.812 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.+.||.|+|||||.+++++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999865
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.70 E-value=0.018 Score=53.32 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
...+.|.||.|+||||+++.|+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.67 E-value=0.014 Score=58.89 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||+++|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.66 E-value=0.0085 Score=57.51 Aligned_cols=37 Identities=16% Similarity=0.351 Sum_probs=24.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHS 408 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~ 408 (568)
++||.|++||||||+.+.|...+.. .| .....+.++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~-~~-------v~~~iI~~Ds 42 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR-EG-------VKAVSIEGDA 42 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH-HT-------CCEEEEEGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhh-cC-------CCeEEEeCCC
Confidence 7999999999999999998776642 11 2345666665
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.018 Score=54.30 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.-+.+.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 447899999999999999999865
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.64 E-value=0.017 Score=50.31 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|+.|+|||||++.+.+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999888653
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.017 Score=51.01 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||..|+|||||++.+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999998887653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.02 Score=50.22 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|..|+|||||++.+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999988763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.015 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999988764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.56 E-value=0.015 Score=51.32 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCCccEE
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPNKGEL 393 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i 393 (568)
++.|+|..|+|||||++-+.....|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 489999999999999999877777888853
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.54 E-value=0.011 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
++.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999999999999999976543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.019 Score=49.85 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|||..|+|||||++.+.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.50 E-value=0.017 Score=56.37 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++||+||-|||||||+..|...
T Consensus 53 ~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEeeeCCCCCCHHHHHHHHHHH
Confidence 6999999999999999988754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.49 E-value=0.018 Score=51.45 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3889999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.49 E-value=0.011 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++.|+|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.48 E-value=0.016 Score=59.21 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.||||+|||||-|+|.||+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~ 72 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKL 72 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.45 E-value=0.022 Score=49.03 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.44 E-value=0.017 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
...+.||||||+||||.+-=||.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999987766764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.022 Score=49.43 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999976543
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.018 Score=55.82 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-+.++||.|||||+|.|.|+..+
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhhcc
Confidence 36789999999999999999865
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.016 Score=50.56 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHhc
Q psy16366 365 VALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G 384 (568)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.017 Score=52.69 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecchHHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERLI 513 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~i 513 (568)
...++|+||.- ++.......|...+..... .+++++++..-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 36799999854 5666778888888877643 477778877543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.34 E-value=0.021 Score=49.72 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=23.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 82 IASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
..+|.+++|.|+=|||||||.|.|+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHh
Confidence 45799999999999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.34 E-value=0.017 Score=52.83 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHhCC
Q psy16366 362 ESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGMFG 441 (568)
Q Consensus 362 Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~~~ 441 (568)
..+++++||+|+||||.+-=|+-.+. ..| .+++++.-+.. ..-..|. .+.+...+|
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~Dt~-----R~ga~eQ-----------L~~~a~~l~ 67 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-KKG-------FKVGLVGADVY-----RPAALEQ-----------LQQLGQQIG 67 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-HTT-------CCEEEEECCCS-----SHHHHHH-----------HHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CceEEEEeecc-----ccchhHH-----------HHHhccccC
Confidence 45699999999999997655554433 222 35787765431 1112222 334445555
Q ss_pred CCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCC
Q psy16366 442 LPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNL 484 (568)
Q Consensus 442 l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~L 484 (568)
++-.... ...++.-=. +=++..+...+-+++|.| |.|.
T Consensus 68 v~~~~~~-~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 68 VPVYGEP-GEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp CCEECCT-TCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCS
T ss_pred cceeecc-cchhhhHHH--HHHHHHhhccCCceEEEe--cCCc
Confidence 5532221 122232111 124555566778888888 5553
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.017 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.022 Score=50.85 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999977653
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.28 E-value=0.021 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68999999999999999887543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.28 E-value=0.014 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|..|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999877764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.27 E-value=0.016 Score=53.64 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecchHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERL 512 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~ 512 (568)
...++|+||.-. |.......+.+.+.++.. .+|++|++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 466999999854 888888899999988754 47889988753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.23 E-value=0.021 Score=50.62 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~La 106 (568)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999995
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.019 Score=52.73 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.3
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
.|.+|.++.|.||+|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999999987775
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.22 E-value=0.023 Score=52.03 Aligned_cols=22 Identities=41% Similarity=0.407 Sum_probs=17.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG 107 (568)
-.+++|||||+||||.+-=||-
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999876555554
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.19 E-value=0.021 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.-++||+|+-|+|||||+..|..
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHH
Confidence 44799999999999999999975
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.19 E-value=0.022 Score=51.91 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.+.+|+++.|.|+.|+|||||+--++-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999866653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.19 E-value=0.022 Score=52.43 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHH
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLL 382 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l 382 (568)
.+.+|+++.|.||.|||||||.--+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999999997644
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.026 Score=49.04 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=18.8
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988874
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.022 Score=49.44 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.023 Score=49.98 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++++|+.|+|||||++.+.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999887654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.013 Score=51.28 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.014 Score=50.94 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.08 E-value=0.024 Score=52.27 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
++||+|.-||||||.++.|+.
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.03 E-value=0.02 Score=53.63 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|.||.|||||+|.+.|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 7799999999999999999754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.022 Score=50.17 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.98 E-value=0.025 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
++.|+|++|+|||||++-+..
T Consensus 8 KilllG~~~vGKTsll~~~~~ 28 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRI 28 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998863
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.97 E-value=0.022 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
..+.|.||.|+||||+++.|+..+...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 468899999999999999999877543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.95 E-value=0.026 Score=51.47 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=17.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG 107 (568)
.++++|||+|+||||.+-=||-
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999876655564
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.95 E-value=0.023 Score=51.86 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=29.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcC-ce-EEEEecchHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQ-GG-VILVSHDERL 512 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~-~t-vi~vsHd~~~ 512 (568)
..++|+||- ..+.......|...|.+.. .+ ++++|++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 469999996 5678888899999998875 33 5666666543
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.025 Score=49.76 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|..|+|||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999877654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.024 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999887754
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.80 E-value=0.025 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.025 Score=49.09 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=18.2
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 399999999999999996544
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.026 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 58999999999999998775443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.026 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
.++|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999977543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.026 Score=53.99 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=25.9
Q ss_pred EEEeCCCEEEEECCCCChHHHHHHHHhcC
Q psy16366 357 FGLDMESRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 357 ~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+.|-+|++.+|+|+.|+|||||+..|+--
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999888753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.72 E-value=0.018 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=9.1
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986665
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.69 E-value=0.025 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.372 Sum_probs=13.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG 107 (568)
.++++|||+|+||||.+==||-
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEEECSCCC----HHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999876555553
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.027 Score=49.50 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+++++|+.|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999976653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.57 E-value=0.029 Score=51.55 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++|+|...||||||+..|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.55 E-value=0.028 Score=48.79 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998754
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.03 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+|+.|+|||||++.+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999998877653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.46 E-value=0.017 Score=54.64 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
...-+.|.||.|+|||+|++.|++.+
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34458899999999999999999976
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.035 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 83 ASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 83 ~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
-+|+.+.|+|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999998775
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.43 E-value=0.044 Score=48.10 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=24.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 75 FHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 75 l~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++..-+. -.|.-+.|.|++|+|||||+-.|.-+
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4443343 34888999999999999998776643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.41 E-value=0.031 Score=49.43 Aligned_cols=29 Identities=38% Similarity=0.617 Sum_probs=23.2
Q ss_pred EEEEECCCCChHHHHHHHHhc--CcCCCccE
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG--ELTPNKGE 392 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G--~~~p~~G~ 392 (568)
++.|+|..|+|||||++-+.- ...||-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 488999999999999988732 24578883
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.032 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=18.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.29 E-value=0.034 Score=51.18 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.4
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
++||+|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999954
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.028 Score=53.53 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+|+|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999864
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.26 E-value=0.015 Score=56.75 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.8
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcCC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELTP 388 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~p 388 (568)
..+.|+||-|+|||||+|.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45899999999999999999999876
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.23 E-value=0.029 Score=52.42 Aligned_cols=22 Identities=45% Similarity=0.816 Sum_probs=20.1
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.+.||.|+|||||.+.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.15 E-value=0.022 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|+||.|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 3567799999999999999853
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.06 E-value=0.035 Score=48.81 Aligned_cols=21 Identities=24% Similarity=0.591 Sum_probs=17.7
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999975543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.86 E-value=0.04 Score=53.39 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++||+|+|||.|++.||-
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHh
Confidence 378999999999999999996
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.85 E-value=0.073 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.393 Sum_probs=19.6
Q ss_pred CCCEEEEECCCCChHHHHHHHHh
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
.|.-+.|.|++|+|||||.-.+.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46678999999999999987664
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.054 Score=51.06 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=32.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
-|..|..+-|.||+|||||||+-.++.... -+ +..+.|+..|-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q-~~-g~~~vyidtE~~ 93 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-RE-GKTCAFIDAEHA 93 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH-HT-TCCEEEEESSCC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH-cC-CCEEEEEccccc
Confidence 577899999999999999999988875321 12 345667665543
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.81 E-value=0.035 Score=52.65 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=26.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy16366 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 78 isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
.=+.+-+|+|.+|+|+.|+|||||+.-|+-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 347899999999999999999999888863
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.81 E-value=0.044 Score=47.98 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|||..|+|||||++-+...
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999988753
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.79 E-value=0.036 Score=54.88 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=25.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+..+.++.+.||.|+|||||+++|++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999999974
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.037 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
+++|=|.-||||||+++.|+-
T Consensus 4 ~IviEG~~GsGKST~~~~L~~ 24 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999999985
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.036 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.0
Q ss_pred EEEEECCCCChHHHHHHHHhc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G 384 (568)
+++|+|+.|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999976654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.50 E-value=0.051 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999999854
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.42 E-value=0.035 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|.||.|+|||+|++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.38 E-value=0.04 Score=55.32 Aligned_cols=105 Identities=20% Similarity=0.215 Sum_probs=58.8
Q ss_pred eCCCEEEEECCCCChHHHHHHHHhcCcCCCccEEEECCCeeEEEEecCCCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHh
Q psy16366 360 DMESRVALVGPNGIGKSTFLNLLKGELTPNKGELRKSPRLRIGKFDQHSGEHLFPDDTPCEYLMKLFNLPYEKSRRQLGM 439 (568)
Q Consensus 360 ~~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~~~~q~~~~~l~~~~~~~e~l~~~~~~~~~~~~~~L~~ 439 (568)
.+.-.+.|.||.||||||+|..+...+.....+| --+- +|.+...+...- .
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i--------~tiE-dPiE~~~~~~~q-------~------------- 206 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI--------LTVE-DPIEFDIDGIGQ-------T------------- 206 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE--------EEEE-SSCCSCCSSSEE-------E-------------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceE--------EEec-cCcccccCCCCe-------e-------------
Confidence 3566899999999999999999988664322222 1121 333222221110 0
Q ss_pred CCCCCccccCCCCCCCHhHHHHHHHHHHHccCCCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEec
Q psy16366 440 FGLPSYAHTIPIRDLSGGQKARVALAELTLNNPDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSH 508 (568)
Q Consensus 440 ~~l~~~~~~~~~~~LSgGqkqRv~lA~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsH 508 (568)
.+... ...| ---+|..+|=++|+++++.|.. |.++.....++-.. |..|+-+-|
T Consensus 207 -~v~~~------~~~~----~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~t-GhlV~tTlH 260 (401)
T d1p9ra_ 207 -QVNPR------VDMT----FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLT-GHLVMSTLH 260 (401)
T ss_dssp -ECBGG------GTBC----HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred -eecCC------cCCC----HHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHhc-CCeEEEEec
Confidence 00000 0111 2335777888899999999986 66666655544432 334444444
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.045 Score=50.16 Aligned_cols=25 Identities=36% Similarity=0.612 Sum_probs=22.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999987654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.10 E-value=0.058 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++||||...+|||||+++|++.
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.08 E-value=0.072 Score=53.31 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEecccc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVE 126 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~ 126 (568)
+=.+.+.||.||||||+|..+.... +-+ ...+..+|..+.
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~-~~~-~~~i~tiEdPiE 197 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQEL-NSS-ERNILTVEDPIE 197 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH-CCT-TSCEEEEESSCC
T ss_pred hceEEEEcCCCCCccHHHHHHhhhh-cCC-CceEEEeccCcc
Confidence 3469999999999999999997642 112 235556665443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.052 Score=50.04 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|.||+|+||||++++++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.05 E-value=0.034 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999998765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.03 E-value=0.052 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.7
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC-CC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT-PN 389 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~-p~ 389 (568)
.++|+|.-.||||||++.|+|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 489999999999999999999753 54
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.92 E-value=0.057 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.194 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+.|.||.|+||||+++.++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHh
Confidence 4899999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.88 E-value=0.052 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
++.|+|..|+|||||++.+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.80 E-value=0.042 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
-+.++||.|||||-|.|.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.65 E-value=0.057 Score=52.01 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=36.9
Q ss_pred CCCCHhHHHHHHHHHHHccCCCeEEE--eCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHH
Q psy16366 452 RDLSGGQKARVALAELTLNNPDILIL--DEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLI 513 (568)
Q Consensus 452 ~~LSgGqkqRv~lA~al~~~p~lLlL--DEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i 513 (568)
..++.-+..++....-+...|-++++ +|.. ..+....+.+.....+..|+.++-..+.-
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 35677777777776667777877764 3332 23445555555556666777777776543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.60 E-value=0.031 Score=54.34 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy16366 86 RRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 86 e~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-.+.|+|+-|+|||||+|.|++.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~i 51 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAAL 51 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHHh
Confidence 46899999999999999999974
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.59 E-value=0.064 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.4
Q ss_pred CEEEEECCCCChHHHHHHHHhcCc
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
=.+||||..-||||||++.|++--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 359999999999999999999753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.30 E-value=0.089 Score=49.49 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=24.5
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.|..|.++-|.||+|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999976665543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.29 E-value=0.061 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++|+|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999965
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.28 E-value=0.077 Score=47.16 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|++|.-.+|||||+..|.|.
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEeccCCcHHHHHHHHHhh
Confidence 899999999999999999984
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.27 E-value=0.11 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCChHHHHHHHHh
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
.|.=+.|.|++|+|||||.-.+.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 36669999999999999887654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.09 E-value=0.065 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+||||..-+|||||+++|+|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.08 E-value=0.07 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG 107 (568)
...++|+|.-|.|||||++.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.077 Score=46.52 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=21.9
Q ss_pred EEEEECCCCChHHHHHHHHhcC---cCCCcc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE---LTPNKG 391 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~---~~p~~G 391 (568)
.+.|+|..|+|||||++-+... ..||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 4789999999999999887542 345666
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.68 E-value=0.078 Score=52.36 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy16366 88 YGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG 107 (568)
+.++||+|||||-|+|.||.
T Consensus 71 iLfiGPTGvGKTElAk~LA~ 90 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAK 90 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eeeeCCCCccHHHHHHHHHh
Confidence 77899999999999999996
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.60 E-value=0.079 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.++++||.|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 37899999999999999999875
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.56 E-value=0.082 Score=51.17 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=25.7
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy16366 74 LFHNANLQIASGRRYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 74 ll~~isl~i~~Ge~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+++-.-..+..| .+.++||.|||||.|.+.|++.
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 344444566666 4566899999999999999985
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.11 Score=47.41 Aligned_cols=21 Identities=57% Similarity=0.605 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.|.|.=|||||||++.|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 578999999999999999975
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.29 E-value=0.13 Score=44.91 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=19.0
Q ss_pred CCCEEEEECCCCChHHHHHHHHh
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
.|.-+.|.|++|+|||||.-.+.
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 46679999999999999885554
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.11 E-value=0.096 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++||||-.-+|||||+++|++..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999753
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.06 E-value=0.077 Score=48.51 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=19.2
Q ss_pred EEEEECCCCChHHHHHHHHhcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
++.|.|.=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999988653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.96 E-value=0.12 Score=48.79 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=34.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccCC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEAS 128 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~~ 128 (568)
-|..|.++-|.||+|||||||+-.++.... -.+..+.|+.-|-..+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq--k~g~~v~yiDtE~~~~ 98 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALD 98 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH--hCCCEEEEEECCccCC
Confidence 467899999999999999999988886422 1234567777665443
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.96 E-value=0.083 Score=52.09 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCcC
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.++++..+++.||.|+|||||.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 336777899999999999999999998763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.87 E-value=0.1 Score=47.39 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy16366 88 YGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+-|.||+|||||-|+++++-.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.82 E-value=0.081 Score=49.95 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=24.0
Q ss_pred EEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 358 GLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 358 ~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.|..|.++-|.||+|+|||||+-.++...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999975555443
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.81 E-value=0.11 Score=49.05 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=32.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCcccCCCceEEEEeccccC
Q psy16366 81 QIASGRRYGLVGPNGHGKTTLLRHIATRALAIPSSIDLLYCEQEVEA 127 (568)
Q Consensus 81 ~i~~Ge~~gLvG~NGsGKSTLlr~LaG~~~~ip~~~~i~~~~qe~~~ 127 (568)
-|..|..+-|.||+|||||||+-.++... ...+..+.|+..|-..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~--q~~g~~~vyIDtE~~~ 100 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHAL 100 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH--HHTTCEEEEEESSCCC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHH--hcCCCEEEEEECCccC
Confidence 46789999999999999999987666421 1233456676666544
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.76 E-value=0.093 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
++++||.-++|||||+.+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999975
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.76 E-value=0.094 Score=49.57 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=25.5
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHhc
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~G 384 (568)
.=+.+-+|++++|+|+.|+|||||+.-|+-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 335788999999999999999999777653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.75 E-value=0.083 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
+++|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999864
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.43 E-value=0.14 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
.+||+|.=.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.32 E-value=0.1 Score=46.94 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHh
Q psy16366 365 VALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~ 383 (568)
+||+|.-++|||||+..|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999985
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.22 E-value=0.12 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.0
Q ss_pred CEEEEECCCCChHHHHHHHHhcC
Q psy16366 363 SRVALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~l~G~ 385 (568)
=.+||||-.-+|||||++.|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999965
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.18 E-value=0.1 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATRA 109 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~~ 109 (568)
.+++||.-.||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.10 E-value=0.12 Score=46.52 Aligned_cols=41 Identities=10% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecchHH
Q psy16366 471 NPDILILDEPTNNLDIESIDALAEAIKNYQG--GVILVSHDERL 512 (568)
Q Consensus 471 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~--tvi~vsHd~~~ 512 (568)
+.+|+|+||. -.|...+...|.+.|.+... -+|++|++..-
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 3679999975 44567888999999998743 46888998763
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.89 E-value=0.11 Score=48.92 Aligned_cols=19 Identities=53% Similarity=0.723 Sum_probs=17.7
Q ss_pred EEEEECCCCChHHHHHHHH
Q psy16366 364 RVALVGPNGIGKSTFLNLL 382 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l 382 (568)
.+||+|+-|+|||||+..|
T Consensus 4 Nv~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHH
Confidence 3799999999999999988
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.84 E-value=0.053 Score=51.44 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 79 NLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 79 sl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
=+.|-+|++++|+|+.|+|||||+..++
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHHH
Confidence 4688899999999999999999997654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.38 E-value=0.12 Score=49.74 Aligned_cols=21 Identities=38% Similarity=0.743 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy16366 87 RYGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG 107 (568)
.+.++||+|+|||.|++.|+-
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~ 75 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAA 75 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHH
Confidence 478999999999999999985
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.35 E-value=0.1 Score=52.10 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=29.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecchHHHH
Q psy16366 472 PDILILDEPTNNLDIESIDALAEAIKNYQGGVILVSHDERLIR 514 (568)
Q Consensus 472 p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~i~ 514 (568)
|-++++||--+-........+....+.++..+++++.++..+.
T Consensus 277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~ 319 (433)
T d1e9ra_ 277 RLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLD 319 (433)
T ss_dssp CEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred ceEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHH
Confidence 4467778866655555566666666777778888888876654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.34 E-value=0.11 Score=48.81 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~La 106 (568)
-++|+|..|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999994
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.19 E-value=0.14 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.|.||.|+|||-|+++++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5799999999999999997654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.12 E-value=0.15 Score=45.87 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy16366 88 YGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG 107 (568)
++++|.-++|||||+..|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999964
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=0.15 Score=47.88 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.||||.|+|||+|..-|+-+
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.92 E-value=0.14 Score=48.47 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEECCCCChHHHHHHHH---hcCcC
Q psy16366 365 VALVGPNGIGKSTFLNLL---KGELT 387 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l---~G~~~ 387 (568)
+||+|+.|||||||+..| +|...
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 899999999999999888 55543
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.80 E-value=0.078 Score=50.44 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=25.4
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy16366 78 ANLQIASGRRYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 78 isl~i~~Ge~~gLvG~NGsGKSTLlr~La 106 (568)
.=+.|-+|++++|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34789999999999999999999987664
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.71 E-value=0.24 Score=48.04 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.8
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
+|.|=|+=||||||+++.|+..+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 58889999999999999999887653
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.18 Score=45.09 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
-+.|||+.|.|||++..-|+-+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHH
Confidence 4689999999999999998853
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.95 E-value=0.15 Score=49.36 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|.|=|+-||||||+++.|+..
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC-
T ss_pred EEEEECCcCCCHHHHHHHHHHH
Confidence 5889999999999999999863
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.61 E-value=0.17 Score=48.96 Aligned_cols=24 Identities=42% Similarity=0.589 Sum_probs=19.6
Q ss_pred EEEEECCCCChHHHHHHHHhcCcC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELT 387 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~ 387 (568)
+|+|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 488999999999999999987653
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.42 E-value=0.18 Score=47.68 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy16366 87 RYGLVGPNGHGKTTLLRHIA 106 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~La 106 (568)
-++|+|..|||||||+-.|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.14 E-value=0.17 Score=50.37 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.2
Q ss_pred CEEEEECCCCChHHHHHHH-HhcCcC
Q psy16366 363 SRVALVGPNGIGKSTFLNL-LKGELT 387 (568)
Q Consensus 363 e~~~ivG~NGsGKSTLlk~-l~G~~~ 387 (568)
.++.|+|+.||||||+++. |...+.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~ 76 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLL 76 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999864 434443
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.13 E-value=0.24 Score=44.10 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
.+|++|.=.+|||||+..|.|.
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~ 31 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGI 31 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEEEccCCcHHHHHHHHHhh
Confidence 4899999999999999999984
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.90 E-value=0.2 Score=49.19 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=19.8
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.++||.|+|||-|.|.|+..+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6678999999999999999765
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=84.80 E-value=0.21 Score=44.56 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEECCCCChHHHHHHHHhcC
Q psy16366 365 VALVGPNGIGKSTFLNLLKGE 385 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~ 385 (568)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999998764
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.77 E-value=0.24 Score=48.03 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|.|=|+-|+||||+++.|+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSG
T ss_pred EEEEECCccCCHHHHHHHHHHH
Confidence 6889999999999999999974
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.70 E-value=0.21 Score=48.41 Aligned_cols=26 Identities=31% Similarity=0.393 Sum_probs=22.9
Q ss_pred EEEEECCCCChHHHHHHHHhcCcCCC
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGELTPN 389 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~~p~ 389 (568)
+|+|=|+=||||||+++.|...+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58999999999999999999877643
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.31 E-value=0.25 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHhcCc
Q psy16366 365 VALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
+.||||.|+|||+++.-|+-.+
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 6799999999999998887644
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=83.99 E-value=0.12 Score=48.83 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
=+.|-+|++++|+|+.|+|||||+..++
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred cccccCCceEeeccCCCCChHHHHHHHH
Confidence 3577899999999999999999987543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.98 E-value=0.19 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy16366 87 RYGLVGPNGHGKTTLLRHIATR 108 (568)
Q Consensus 87 ~~gLvG~NGsGKSTLlr~LaG~ 108 (568)
+|.|=|+-|+||||+++.|+-.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.82 E-value=0.22 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 37789999999999999998876
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.78 E-value=0.24 Score=47.78 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=23.3
Q ss_pred eEEEeCCCEEEEECCCCChHHHHHHHHhcCc
Q psy16366 356 NFGLDMESRVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 356 s~~i~~Ge~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-....+| ++.++||.|+|||.|.+.|++.+
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3444444 45668999999999999999865
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.27 Score=46.09 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=19.5
Q ss_pred EEEEECCCCChHHHHHHHHhcCc
Q psy16366 364 RVALVGPNGIGKSTFLNLLKGEL 386 (568)
Q Consensus 364 ~~~ivG~NGsGKSTLlk~l~G~~ 386 (568)
-+.||||.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999998887644
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.50 E-value=0.35 Score=43.94 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHhc
Q psy16366 365 VALVGPNGIGKSTFLNLLKG 384 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~G 384 (568)
++++|.-.+|||||+..|..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 89999999999999999943
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.33 E-value=0.33 Score=43.27 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc-ccCCCceEEEEe
Q psy16366 85 GRRYGLVGPNGHGKTTLLRHIATRAL-AIPSSIDLLYCE 122 (568)
Q Consensus 85 Ge~~gLvG~NGsGKSTLlr~LaG~~~-~ip~~~~i~~~~ 122 (568)
+-.+.+.||+|+||||+++.++.... ....+-++.++.
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~ 53 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID 53 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 45789999999999999999986321 123344555543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.12 E-value=0.3 Score=44.23 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.4
Q ss_pred EEEECCCCChHHHHHHHHh
Q psy16366 365 VALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 365 ~~ivG~NGsGKSTLlk~l~ 383 (568)
+||+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 8999999999999998873
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| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.98 E-value=0.34 Score=43.11 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q psy16366 88 YGLVGPNGHGKTTLLRHIAT 107 (568)
Q Consensus 88 ~gLvG~NGsGKSTLlr~LaG 107 (568)
+|++|.-++|||||+..|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999975
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.86 E-value=0.29 Score=45.81 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCChHHHHHHHHhcCcCCCc
Q psy16366 361 MESRVALVGPNGIGKSTFLNLLKGELTPNK 390 (568)
Q Consensus 361 ~Ge~~~ivG~NGsGKSTLlk~l~G~~~p~~ 390 (568)
+--.+.|.||-++|||||+++|+.++ +..
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~ 131 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV-PFY 131 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS-SCE
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHh-cch
Confidence 44568999999999999999999987 443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.41 E-value=0.2 Score=47.41 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=24.4
Q ss_pred eeEEEeCCCEEEEECCCCChHHHHHHHHh
Q psy16366 355 VNFGLDMESRVALVGPNGIGKSTFLNLLK 383 (568)
Q Consensus 355 vs~~i~~Ge~~~ivG~NGsGKSTLlk~l~ 383 (568)
.=+.|-+|++++|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34678899999999999999999976443
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| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.21 E-value=0.16 Score=41.42 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.7
Q ss_pred EeCCCEEEEECCCCCcHHHHH
Q psy16366 82 IASGRRYGLVGPNGHGKTTLL 102 (568)
Q Consensus 82 i~~Ge~~gLvG~NGsGKSTLl 102 (568)
++.|+.+.|++|.|||||+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 357999999999999999544
|