Psyllid ID: psy16371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL
Secondary Structure (PSIPRED)
cccccccccEEEEcccccHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHccccccccEEEcccccccEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccHHHHHHcHHHHHccccHHHHHHHccccccccccHHHHHcccccHHccccEcccccccHEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
mvgvlpeysclvlspanlwQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL
Flexible Loop (DISEMBL)
MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEIlfginikdtgirryslrnkqriiqfsvtlfmtkydkgyl
Low Complexity Region (SEG)
MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL
Disordered region (IsUnstruct)
***VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYD****
Disordered Region (DISOPRED)
**GVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYD***L
Disordered Region (DISEMBL)
MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL
Disordered Region (DISPRO)
**GVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYD**YL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
A0JPH4	1311	Sterol regulatory element	N/A	N/A	0.923	0.064	0.397	3e-13
Q5MNU5	1279	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	8e-12
A2RRU4	1276	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	1e-11
Q6GQT6	1276	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	1e-11
P97260	1276	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	2e-11
Q12770	1279	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	2e-11
A6QM06	1278	Sterol regulatory element	yes	N/A	0.934	0.066	0.359	3e-11

>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating protein OS=Xenopus laevis GN=scap PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 5   LPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTGI 63
           LPE+ CL+LSPAN WQ     F  D  LI TI  H     +   TL ++LFG+  K +G+
Sbjct: 162 LPEHGCLLLSPANFWQNSQEQFSSDPDLIRTIHQHEPKTLQTSATLKDLLFGVPGKQSGV 221

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
              SL N++RI+ ++VT+ + +Y+  +L
Sbjct: 222 ---SLYNRKRIVSYTVTIALRRYNATFL 246

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the scap/srebf complex from the ER upon low cholesterol. Low sterol concentrations trigger a conformational change in the SSC domain of scap, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of srebf in the Golgi, release of the transcription factor fragment of srebf from the membrane, its import into the nucleus and up-regulation of ldlr, and the mevalonate pathway.
Xenopus laevis (taxid: 8355)

>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating protein OS=Sus scrofa GN=SCAP PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 ILPEHGCLLLSPGNFWQNDRERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKHSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R++ +++TL    Y   +L
Sbjct: 223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Sus scrofa (taxid: 9823)

>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating protein OS=Rattus norvegicus GN=Scap PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R++ +++TL   +Y   +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating protein OS=Mus musculus GN=Scap PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R++ +++TL   +Y   +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Mus musculus (taxid: 10090)

>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R + +++TL   +Y   +L
Sbjct: 223 V---SLYTRKRTVSYTITLVFQRYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Cricetulus griseus (taxid: 10029)

>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating protein OS=Homo sapiens GN=SCAP PE=1 SV=4

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R++ +++TL    Y   +L
Sbjct: 223 V---SLYTRKRMVSYTITLVFQHYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Homo sapiens (taxid: 9606)

>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating protein OS=Bos taurus GN=SCAP PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 4/89 (4%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
           +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct: 163 LLPEHGCLLLSPGNFWQNDRERFHADPDIIRTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query: 63  IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +   SL  ++R++ +++TL    Y   +L
Sbjct: 223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248

Escort protein required for cholesterol as well as lipid homeostasis. Regulates export of the SCAP/SREBF complex from the ER upon low cholesterol. Formation of a ternary complex with INSIG at high sterol concentrations leads to masking of an ER-export signal in SCAP and retention of the complex in the ER. Low sterol concentrations trigger release of INSIG, a conformational change in the SSC domain of SCAP, unmasking of the ER export signal, recruitment into COPII-coated vesicles, transport to the Golgi complex, proteolytic cleavage of SREBF in the Golgi, release of the transcription factor fragment of SREBF from the membrane, its import into the nucleus and up-regulation of LDLR, INSIG1 and the mevalonate pathway.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
91083033	1236	PREDICTED: similar to sterol regulatory	0.967	0.071	0.579	6e-27
345484020	1335	PREDICTED: sterol regulatory element-bin	0.967	0.065	0.545	5e-25
307207616	1336	Sterol regulatory element-binding protei	0.967	0.065	0.511	6e-25
332016798	1437	Sterol regulatory element-binding protei	0.967	0.061	0.511	1e-24
242016109	1357	sterol regulatory element binding protei	0.967	0.064	0.534	1e-24
307176943	1321	Sterol regulatory element-binding protei	0.967	0.066	0.511	1e-24
66555130	1329	PREDICTED: sterol regulatory element-bin	0.967	0.066	0.522	2e-24
380020480	1328	PREDICTED: LOW QUALITY PROTEIN: sterol r	0.967	0.066	0.522	2e-24
350411518	1328	PREDICTED: sterol regulatory element-bin	0.967	0.066	0.511	4e-24
340729793	1328	PREDICTED: sterol regulatory element-bin	0.967	0.066	0.511	5e-24

>gi|91083033|ref|XP_974766.1| PREDICTED: similar to sterol regulatory element-binding protein cleavage-activating protein [Tribolium castaneum] gi|270007013|gb|EFA03461.1| hypothetical protein TcasGA2_TC013456 [Tribolium castaneum]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 73/88 (82%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           +LPEYSCLVLSPANLWQQD+  F +DS L++TIFNHH+  K K +++E++FG+ + DTGI
Sbjct: 132 ILPEYSCLVLSPANLWQQDVLKFTQDSSLLTTIFNHHNFQKGKTSITEMMFGMKVFDTGI 191

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY LRN+ RIIQ+++TLF  +YD+ ++
Sbjct: 192 KRYPLRNRYRIIQYAITLFFKEYDEKFV 219

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484020|ref|XP_003424927.1| PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like [Nasonia vitripennis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 73/88 (82%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CL+LSPANLWQ+ I  F +D+ LI TIF++ +L K K++ +E+LFG+N+K+TG+
Sbjct: 131 VLPEYNCLILSPANLWQRSIEAFNQDTNLIGTIFSYQNLQKGKISTAEMLFGMNLKETGV 190

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY LR +QRI+Q++VT+F+ +YD  +L
Sbjct: 191 KRYPLRVRQRILQYAVTMFLKEYDPVFL 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207616|gb|EFN85276.1| Sterol regulatory element-binding protein cleavage-activating protein [Harpegnathos saltator]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQQ I +F +D+ LI+TIF++ +  K K++L+E++FG+N+K+TG+
Sbjct: 141 VLPEYNCLVLSPANLWQQSIELFSQDTNLINTIFSYQNFQKGKISLAEVMFGMNLKETGV 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY +R +QR++Q++VT+++ +YD  ++
Sbjct: 201 KRYPIRIRQRVLQYAVTIYLKEYDHEFI 228

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016798|gb|EGI57619.1| Sterol regulatory element-binding protein cleavage-activating protein [Acromyrmex echinatior]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQQ I +F +D+ LI+TIF++ +  + K++L+E++FG+++K+TG+
Sbjct: 250 VLPEYNCLVLSPANLWQQSIELFSQDTNLINTIFSYQNFQRGKISLAEVMFGMSLKETGV 309

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY  R +QRI+Q++VT+++ KYD+ ++
Sbjct: 310 KRYPARVRQRILQYAVTIYLKKYDQEFI 337

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016109|ref|XP_002428678.1| sterol regulatory element binding protein cleavage-activating protein, putative [Pediculus humanus corporis] gi|212513349|gb|EEB15940.1| sterol regulatory element binding protein cleavage-activating protein, putative [Pediculus humanus corporis]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 73/88 (82%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           +LPEY+CL+LSPAN WQQ+   FQ D+ L+ TIFN+H+  K K++L+EILFG+N+K++G+
Sbjct: 160 LLPEYNCLILSPANFWQQNEYNFQMDTNLMGTIFNYHNFQKGKISLTEILFGVNMKESGL 219

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY LR++ RIIQF++TL ++ +D+ Y+
Sbjct: 220 KRYPLRSRPRIIQFAITLILSDFDERYI 247

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176943|gb|EFN66249.1| Sterol regulatory element-binding protein cleavage-activating protein [Camponotus floridanus]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 76/88 (86%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQQ + +F +D+ LI+TIF++ +L + K++L+E++FG+++K+TG+
Sbjct: 141 VLPEYNCLVLSPANLWQQSMELFAQDTNLINTIFSYQNLQRGKISLAEVMFGMSLKETGV 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY  R +QRI+Q++VT+++ KYD+ ++
Sbjct: 201 KRYPARIRQRILQYAVTIYLKKYDQEFI 228

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66555130|ref|XP_394934.2| PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like [Apis mellifera]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQ+ I ++ +D+ LI+TI+++ +L K K++L+EI+FG+N+K+TGI
Sbjct: 141 VLPEYNCLVLSPANLWQRSIELYAQDTNLINTIYSYQNLQKGKISLAEIMFGMNLKETGI 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY +R +QRI+Q++VT+++  YD  ++
Sbjct: 201 KRYPMRIRQRILQYAVTIYLKNYDPEFI 228

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020480|ref|XP_003694111.1| PREDICTED: LOW QUALITY PROTEIN: sterol regulatory element-binding protein cleavage-activating protein-like [Apis florea]

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQ+ I ++ +D+ LI+TI+++ +L K K++L+EI+FG+N+K+TGI
Sbjct: 141 VLPEYNCLVLSPANLWQRSIELYAQDTNLINTIYSYQNLQKGKISLAEIMFGMNLKETGI 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY +R +QRI+Q++VT+++  YD  ++
Sbjct: 201 KRYPMRIRQRILQYAVTIYLKNYDPEFI 228

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411518|ref|XP_003489375.1| PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like [Bombus impatiens]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQ+ I ++ +D+ LI+TI+++ +L K K++L+E++FG+N+K+TGI
Sbjct: 141 VLPEYNCLVLSPANLWQRSIELYAQDTNLINTIYSYQNLQKGKISLAEVMFGMNLKETGI 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY +R +QRI+Q++VT+++  YD  ++
Sbjct: 201 KRYPIRLRQRILQYAVTIYLKDYDPEFI 228

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729793|ref|XP_003403180.1| PREDICTED: sterol regulatory element-binding protein cleavage-activating protein-like [Bombus terrestris]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 75/88 (85%)

Query: 4   VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
           VLPEY+CLVLSPANLWQ+ I ++ +D+ LI+TI+++ +L K K++L+E++FG+N+K+TGI
Sbjct: 141 VLPEYNCLVLSPANLWQRSIELYAQDTNLINTIYSYQNLQKGKISLAEVMFGMNLKETGI 200

Query: 64  RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
           +RY +R +QRI+Q++VT+++  YD  ++
Sbjct: 201 KRYPIRLRQRILQYAVTIYLKDYDPEFI 228

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
FB|FBgn0033052	1276	SCAP "SCAP" [Drosophila melano	0.967	0.068	0.5	2e-20
UNIPROTKB|F1NK67	756	SCAP "Uncharacterized protein"	0.934	0.112	0.382	3.3e-12
ZFIN|ZDB-GENE-040107-41	1252	scap "SREBF chaperone" [Danio	0.967	0.070	0.358	1e-11
UNIPROTKB|Q5MNU5	1279	SCAP "Sterol regulatory elemen	0.934	0.066	0.359	9.8e-11
UNIPROTKB|F1SNT3	1280	SCAP "Sterol regulatory elemen	0.934	0.066	0.359	9.8e-11
WB|WBGene00004744	1087	scp-1 [Caenorhabditis elegans	0.846	0.070	0.379	1.3e-10
MGI|MGI:2135958	1276	Scap "SREBF chaperone" [Mus mu	0.934	0.066	0.359	1.6e-10
RGD|1309378	1276	Scap "SREBF chaperone" [Rattus	0.934	0.066	0.359	1.6e-10
UNIPROTKB|F1PI33	1278	SCAP "Uncharacterized protein"	0.934	0.066	0.359	1.6e-10
UNIPROTKB|P97260	1276	SCAP "Sterol regulatory elemen	0.934	0.066	0.359	2.6e-10

FB|FBgn0033052 SCAP "SCAP" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 2.0e-20, P = 2.0e-20
 Identities = 44/88 (50%), Positives = 67/88 (76%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGI 63
             + PEY CL+LSPANLW Q+   F +D+ +++TIF +H+L K+KV+ +E+LFG+ ++DTG 
Sbjct:   239 IFPEYGCLLLSPANLWTQNSQNFTRDTNILNTIFQYHNLQKSKVSAAEMLFGLPMQDTGF 298

Query:    64 RRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +RY LR + RIIQ+++TLF+   D  YL
Sbjct:   299 KRYPLRARSRIIQYALTLFLKHNDMEYL 326

GO:0000042 "protein targeting to Golgi" evidence=NAS

GO:0035103 "sterol regulatory element binding protein cleavage" evidence=NAS

GO:0016485 "protein processing" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NK67 SCAP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 3.3e-12, P = 3.3e-12
 Identities = 34/89 (38%), Positives = 53/89 (59%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 LLPEHGCLLLSPGNFWQNDRERFNADPDIIKTIHQHEPKALQTSATLKDLLFGLPGKYSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +  Y   N++R++ ++VTL + +YD  +L
Sbjct:   223 VNLY---NRKRVVSYTVTLGLQRYDSRFL 248

GO:0016021 "integral to membrane" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=IEA

GO:0045540 "regulation of cholesterol biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040107-41 scap "SREBF chaperone" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 33/92 (35%), Positives = 54/92 (58%)

Query:     1 MVGVLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIK 59
             M  VLPE+ CL++SP N WQ   ++F  D  L+ T+  H         TL ++LFG+  K
Sbjct:   157 MQAVLPEHGCLLVSPGNYWQNRRDLFDADPDLLKTVHQHEPKGLHTSATLRDLLFGVPGK 216

Query:    60 DTGIRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
              TG+  YS   K+R++ ++VT+ ++ YD  ++
Sbjct:   217 QTGVSLYS---KKRVVTYTVTIALSSYDARFV 245

GO:0016021 "integral to membrane" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q5MNU5 SCAP "Sterol regulatory element-binding protein cleavage-activating protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 ILPEHGCLLLSPGNFWQNDRERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKHSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R++ +++TL    Y   +L
Sbjct:   223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

UNIPROTKB|F1SNT3 SCAP "Sterol regulatory element-binding protein cleavage-activating protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 ILPEHGCLLLSPGNFWQNDRERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKHSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R++ +++TL    Y   +L
Sbjct:   223 V---SLYTRKRLVSYTITLVFQHYHAKFL 248

GO:0045540 "regulation of cholesterol biosynthetic process" evidence=IEA

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=IEA

GO:0032933 "SREBP signaling pathway" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00004744 scp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 30/79 (37%), Positives = 51/79 (64%)

Query:    10 CLVLSPANLWQQDINMFQKDSQLISTIFNHHDLNKAKVTLSEILFGINIKDTGIRRYSLR 69
             C+VLSPA++W  ++  F++D   I+T+FN H   K+   + ++L G  I  TGI++    
Sbjct:   155 CVVLSPASIWYNNLQKFREDDDTITTVFNEHC--KSTFCMRDLLLGAPIAATGIKQKYQT 212

Query:    70 NKQRIIQFSVTLFMTKYDK 88
             N++R I+F+VT+F  +Y K
Sbjct:   213 NRKRKIEFAVTMFFARYSK 231

GO:0008158 "hedgehog receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

MGI|MGI:2135958 Scap "SREBF chaperone" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R++ +++TL   +Y   +L
Sbjct:   223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0015485 "cholesterol binding" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0032933 "SREBP signaling pathway" evidence=ISO

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045540 "regulation of cholesterol biosynthetic process" evidence=IMP

RGD|1309378 Scap "SREBF chaperone" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R++ +++TL   +Y   +L
Sbjct:   223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0007568 "aging" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=IEA;ISO

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0032403 "protein complex binding" evidence=IPI

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0032933 "SREBP signaling pathway" evidence=IEA;ISO

GO:0042304 "regulation of fatty acid biosynthetic process" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0045540 "regulation of cholesterol biosynthetic process" evidence=IEA;ISO

UNIPROTKB|F1PI33 SCAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 32/89 (35%), Positives = 51/89 (57%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 LLPEHGCLLLSPGNFWQNDRERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R++ +++TL   +Y   +L
Sbjct:   223 V---SLYTRKRMVSYTITLVFQRYHAKFL 248

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P97260 SCAP "Sterol regulatory element-binding protein cleavage-activating protein" [Cricetulus griseus (taxid:10029)]

 Score = 160 (61.4 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 32/89 (35%), Positives = 50/89 (56%)

Query:     4 VLPEYSCLVLSPANLWQQDINMFQKDSQLISTIFNHHDLN-KAKVTLSEILFGINIKDTG 62
             +LPE+ CL+LSP N WQ D   F  D  +I TI  H     +   TL ++LFG+  K +G
Sbjct:   163 LLPEHGCLLLSPGNFWQNDWERFHADPDIIGTIHQHEPKTLQTSATLKDLLFGVPGKYSG 222

Query:    63 IRRYSLRNKQRIIQFSVTLFMTKYDKGYL 91
             +   SL  ++R + +++TL   +Y   +L
Sbjct:   223 V---SLYTRKRTVSYTITLVFQRYHAKFL 248

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0032933 "SREBP signaling pathway" evidence=ISS

GO:0035105 "sterol regulatory element binding protein import into nucleus" evidence=IMP

GO:0072600 "establishment of protein localization to Golgi" evidence=IMP

GO:0090110 "cargo loading into COPII-coated vesicle" evidence=IDA

GO:0030127 "COPII vesicle coat" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG1933|consensus	1201		96.04
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	85.13

>KOG1933|consensus

Probab=96.04  E-value=9.5e-05  Score=67.82  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=64.5

Q ss_pred             CCCCCCeeeEcCcccchhhhhhhccchh-hhhhhhhccc-cccccchhhhhhhccccccceeeeeeccCceeEEEEEEEE
Q psy16371          4 VLPEYSCLVLSPANLWQQDINMFQKDSQ-LISTIFNHHD-LNKAKVTLSEILFGINIKDTGIRRYSLRNKQRIIQFSVTL   81 (91)
Q Consensus         4 ~lPe~~CLlLSPan~W~~d~~~F~~D~~-ii~TI~~~~~-~~~~~~sl~dlLfGvP~k~TGvk~~~~~~r~R~i~yAVTl   81 (91)
                      +.+||.|..+||++.|++|.+.|..|++ +..+..+|-+ ++..+..+++...  +++-.|++-.++-.+.+++.+|+|+
T Consensus       172 l~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~~c~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~  249 (1201)
T KOG1933|consen  172 LRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPETCPASLLLKSPTE--TFVVGGIPGLSVFLILAFIFFAALL  249 (1201)
T ss_pred             ceeccccccCCccceeecccccccCCcccccccchhcchhhcCccccCCCCcc--ceeeccccchhHHHHHHHHHHHHHH
Confidence            6789999999999999999999999988 7888888866 4555555555555  6667777776666688888888887


Q ss_pred             EeeccC
Q psy16371         82 FMTKYD   87 (91)
Q Consensus        82 ~l~~y~   87 (91)
                      +|-.|.
T Consensus       250 ~f~~~~  255 (1201)
T KOG1933|consen  250 VFLGYS  255 (1201)
T ss_pred             HHHHHH
Confidence            765543

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=85.13  E-value=0.79  Score=42.40  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             CCCeeeEcCcccchhhhhhhccc--hhhh-hhhhhc--cccccccchhhhhhhccccccc----eeeeeeccCceeEEEE
Q psy16371          7 EYSCLVLSPANLWQQDINMFQKD--SQLI-STIFNH--HDLNKAKVTLSEILFGINIKDT----GIRRYSLRNKQRIIQF   77 (91)
Q Consensus         7 e~~CLlLSPan~W~~d~~~F~~D--~~ii-~TI~~~--~~~~~~~~sl~dlLfGvP~k~T----Gvk~~~~~~r~R~i~y   77 (91)
                      +++|.+-||+++||+|.+.++.+  ++.+ .+-.+|  ++.....-|+.  .||.|++-.    |++   -.+-.+.-.+
T Consensus       434 ~~~C~v~S~~~yfq~~~~~l~~~~~~~~~~~~~~~~~~~c~~~p~~c~~--~fg~pl~p~~~lgG~~---~~~~~~A~Al  508 (1204)
T TIGR00917       434 PYNCFIYSTCGYFQNMYSKLDPENYDDGFGVDYVKYCFECFTSPESCLS--AFGGPVDPTTALGGFS---GNNFSEASAF  508 (1204)
T ss_pred             CCCCccCCHHHHhccChhhcCcccccccccccHHHhhhccccCcchhcc--cCCCcCCcceeeCCcC---CCCcccceEE
Confidence            58899999999999999999642  2222 122221  11111111221  345554432    332   1233456677


Q ss_pred             EEEEEeeccC
Q psy16371         78 SVTLFMTKYD   87 (91)
Q Consensus        78 AVTl~l~~y~   87 (91)
                      .||..++.++
T Consensus       509 ~lT~~l~n~~  518 (1204)
T TIGR00917       509 VVTFPVNNFV  518 (1204)
T ss_pred             EEEEEEecCC
Confidence            8888888654

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00