Psyllid ID: psy16377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340----
Protein Sequence
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISKNHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQEYASRTDRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYLV
Secondary Structure (PSIPRED)
ccccccccEEccccccccEEEEEEccccccccccccccccccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEccccccccccHHHccccccccEEEccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHcccccccccEEEEEcccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEccccccccHHHHcccccccEEEccccccccccHHHccccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHHHHHHccccccccccEEEccccccccccEEccccccccccccccccEEEHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHHccccccccEEEEccccccccccccccccHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHcccccEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEcccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccccEEEEEcEEEEcccccccccccHHHcEEEEEcccccccccccccHHHHHccccccEEEccccccccccHHHHHcHHcccEEEEcccccccccccHHHccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHHHHHHHccccccccccccccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHcccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHccEEEccccccccccccHHHccccccEEEEccccccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccccccccccccccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccHcccccccHcccccccccccccccccccccccccccccHHHHHcccccccEEEccccccccccHHHcccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHHHHHHHHHHcccccccccEEEccccccccccccccccccccccccccccEcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEccccHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHccccHHHHHHHHHHHccEEEEEcHHHHHHHHccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEccccHHHccHHHHHHHHcccEEEEccHHHHHHHHHHcccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHccccccccHHccccccccccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mfevpencswkmenesmNRISVTCnlnylgkgggsnlsfvptdlitklnidcdatvlldssittksfqNIYSLEelkisncklvelpvdvfsglrnlkrlTINTrnlqwdkskkldlvpgsldglRELQVLNIsssniksisDDVFCSLANIqtlnlsrnsirdiDTLGFAVRRasaesnsgekiecsggmdlrildlshnklrtlgdysgiTKFRRLQnlhlenneisqiapNAFVALSSLRILNIssnhlvslpeglfsscRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLssnhlssnhidetTFIGLIRLIILNLsnneltridaktfKDLVFLQRLdlrnnsigyiednaFLSLYNLHtiylsenrIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFkncsalkeldlssnaiveipsalselpflktldlgenqiskiengsfknlqqltdlrlvdnnignlssgmlyelpslevlnlsknkihqieigtfEKNKRLAAIrldsnfltdINGVFTYLAQLLWLNLSENHLVWfdyamvpgnlkwlDIHGNYISSLNnyyeikdglsiknldasHNRILEiselsipnsvEVLFINNnliksvkphtffdksnlarvdiyanditkldltalrlkpvpqnktlpefylggnpfdcdcsmdwlpiinnntspsmerqypkimdldnvvckmtysrgsthlpaseaapsqylcpydihcfalchccefdacdcemtcpkncscfhdqnwntnvvdcseqqistvppripmdathvyldgntfktipnhvfigRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLithfygyefdnlEKLSELYLQENRIEYIANGTFNALISLQVLQLDgnrlksfrafdlnTNSMLRKVylgnnpfscsCATLQELQTWIIdnsnkvkdgldiscvidessppirkeidlnsttcteyyATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRlfnfkatsskhfgedreklpkdeEFVLQSIVAELehgnpsyqlclhyrdlphhspylqqhttspvVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEnivpeaesdielkpYLKSCMKIRWGEKRFWERLRYamptcdnskkscnyrrninnytidsgtgrrsieahhthpyssqhisshplfkastvisknhnqedlayssattatpspkphrlhcytnasdkpvsdhiyssidtpeyqeyasrtdrnstrrmngkvpvhqqtwspagvtmmdsngvqaylv
Flexible Loop (DISEMBL)
mfevpencswkmenESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVfsglrnlkrltintrnlqwdkskkldLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIqtlnlsrnsirdIDTLGFAVRrasaesnsgekiecsggMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIselsipnsVEVLFINNNLIKSVKphtffdksnlarvDIYANDITKldltalrlkpvpqnKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIScvidessppirkeidlnsTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNfkatsskhfgedreklpkDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKnflqtewsrSDFLIEAAEASRRVILVLTKNflqtewsrSDFRSAIHEAlttkthklvlveenivpeaesdielkpylkSCMKIRWGEKRFWERLRYamptcdnskkscnyrrnINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISKNHNQEDLAYSSattatpspkpHRLHCYTNASDKPVSDHIyssidtpeyqeyasrtdrnstrrmngkvpvhqqtwspagvtmmdSNGVQAYLV
Low Complexity Region (SEG)
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLnisssniksisDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAlsslrilnissnhlVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQllvldlssnhlssnhIDETTFIGlirliilnlsnnelTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPfmiitflmflvfliliifmfvfKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISKNHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQEYASRTDRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYLV
Disordered region (IsUnstruct)
*****************NRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVR***********IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNT******QYPKIMDLDNVVCKMTYSRGSTHL*****APSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKAT****************EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTID*******************************************************************************************************************************
Disordered Region (DISOPRED)
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI**********IDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAM***********************************************************************************************IYSSI*********************************************AYLV
Disordered Region (DISEMBL)
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVR***********IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHH**********SHPLFKASTVISKNHNQEDLAYSS*********PHRLHCYTNASDKPVSDHIYSSIDTPEYQEYASRTDRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYLV
Disordered Region (DISPRO)
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILV*******TEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHP*****************************************DKPVSDHIYSSIDTPEYQEYASRTDRN**R***********************NGV**YL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISKNHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQEYASRTDRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1344	2.2.26 [Sep-21-2011]
P08953	1097	Protein toll OS=Drosophil	no	N/A	0.619	0.759	0.242	2e-52
O88280	1523	Slit homolog 3 protein OS	yes	N/A	0.528	0.466	0.237	1e-37
P70389	603	Insulin-like growth facto	yes	N/A	0.342	0.762	0.301	3e-36
O75094	1523	Slit homolog 3 protein OS	yes	N/A	0.526	0.464	0.239	5e-36
O02833	605	Insulin-like growth facto	N/A	N/A	0.345	0.768	0.280	8e-36
O88279	1531	Slit homolog 1 protein OS	no	N/A	0.408	0.358	0.263	1e-35
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.548	0.483	0.247	1e-35
O75093	1534	Slit homolog 1 protein OS	no	N/A	0.412	0.361	0.262	3e-35
Q9R1B9	1521	Slit homolog 2 protein OS	no	N/A	0.549	0.485	0.241	5e-35
P35859	603	Insulin-like growth facto	no	N/A	0.354	0.791	0.266	6e-35

>sp|P08953|TOLL_DROME Protein toll OS=Drosophila melanogaster GN=Tl PE=1 SV=1

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 254/1049 (24%), Positives = 417/1049 (39%), Gaps = 216/1049 (20%)

Query: 199  SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
             H  + ++ DY GI     L  +   +N    I       L  L+    ++  L  +P  
Sbjct: 111  GHTPIASILDYLGIVSPTTL--IFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPAN 168

Query: 259  LFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318
            L +  R++S +  + N + E+   LF  LE L  ++  SN L    +    F  + +L  
Sbjct: 169  LLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLR--QMPRGIFGKMPKLKQ 225

Query: 319  LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
            LNL +N+L  +    F+    +  +D+ +N I  +  + F  L N+  I LS N    + 
Sbjct: 226  LNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLP 285

Query: 379  AHLFNGLYVLSKLTLSNNL--LVNIDSKAFKNCSALK----------------------- 413
              LF+    L+++ L NN   L  + S+ F N   L+                       
Sbjct: 286  QGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHSTQIT 345

Query: 414  ELDLSSNAIVEIPSALSELPF-LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
             + L  N +  +P+ L E    L +LDL  N+++ + +  F +   LTDLRL DN +  +
Sbjct: 346  NISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGI 405

Query: 473  SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN------------FLTDI 520
            S  +   L +L  L +S+N++  I+   F     L  + LD N              T I
Sbjct: 406  SGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQPLLDIMLQTQI 465

Query: 521  NGVFTYLAQLLWLNLSENHLVWF--DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIK 578
            N  F Y+  LL LNL  N +++   D+      L+ LD+  N ISSL   YE    LS  
Sbjct: 466  NSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLG--YEDLAFLSQN 523

Query: 579  NL--DASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
             L  + +HN+I  I+   +P  V +    NN              NL  VD         
Sbjct: 524  RLHVNMTHNKIRRIA---LPEDVHLGEGYNN--------------NLVHVD--------- 557

Query: 637  DLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDW-LPIINNNTSPSMERQYPKIMDLDNV 695
                                L  NP  CDC++ W + ++     P   RQ+   +  D +
Sbjct: 558  --------------------LNDNPLVCDCTILWFIQLVRGVHKPQYSRQFK--LRTDRL 595

Query: 696  VCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQN 755
            VC        T  P  +  P   +CP D           F     E  CP+ C+C H + 
Sbjct: 596  VCSQPNVLEGT--PVRQIEPQTLICPLD-----------FSDDPRERKCPRGCNC-HVRT 641

Query: 756  WNTN-VVDCSEQQISTVPPRIP-----MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVN 809
            ++   V++C    ++ V PR+P     M    ++L+ NT   +P+    G +++ SL++ 
Sbjct: 642  YDKALVINCHSGNLTHV-PRLPNLHKNMQLMELHLENNTLLRLPSANTPGYESVTSLHLA 700

Query: 810  NSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
                        N L+S+ V  L  NL TH                              
Sbjct: 701  G-----------NNLTSIDVDQLPTNL-THLD---------------------------- 720

Query: 870  NALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
               IS   LQ+    +  F    LN     R V L  NP+ C C T + L  +  DN  +
Sbjct: 721  ---ISWNHLQMLNATVLGF----LNRTMKWRSVKLSGNPWMCDC-TAKPLLLFTQDNFER 772

Query: 930  VKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFLMFLV 989
            + D  ++ CV +   P    E+  N     E               ++   ++  L  L+
Sbjct: 773  IGDRNEMMCV-NAEMPTRMVELSTNDICPAEKGV------------FIALAVVIALTGLL 819

Query: 990  FLILIIFMFVFKDPFRVWLYTKYGIRLFNFKA--TSSKHFGEDREKLPKDEEFVLQSIVA 1047
                    + F+   ++WLY    +  F  +      K F        KD+ F+   +V 
Sbjct: 820  AGFTAALYYKFQTEIKIWLYAHNLLLWFVTEEDLDKDKKFDAFISYSHKDQSFIEDYLVP 879

Query: 1048 ELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRS 1107
            +LEHG   +QLC+H RD      +L        ++ +   SRR I+VL++NF+++EW+R 
Sbjct: 880  QLEHGPQKFQLCVHERD------WLVGGHIPENIMRSVADSRRTIIVLSQNFIKSEWARL 933

Query: 1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD 1167
            +F                         R+  RSA++E    ++  +V++  +I    + D
Sbjct: 934  EF-------------------------RAAHRSALNEG---RSRIIVIIYSDIGDVEKLD 965

Query: 1168 IELKPYLKSCMKIRWGEKRFWERLRYAMP 1196
             ELK YLK    ++WG+  FW++LR+A+P
Sbjct: 966  EELKAYLKMNTYLKWGDPWFWDKLRFALP 994

Component of the extracellular signaling pathway that establishes the dorsal-ventral pathway of the embryo. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Promotes heterophilic cellular adhesion. Spz C-106 in the hemolymph controls expression of the antifungal peptide Drosomycin (Drs) by acting as a ligand of Tl and inducing an intracellular signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 221/929 (23%), Positives = 356/929 (38%), Gaps = 219/929 (23%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI----------------- 102
           S I   +FQ++  LE L+++  KL  LP  +F     L RL +                 
Sbjct: 98  SVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGVT 157

Query: 103 NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
             +NLQ D +    +  G+   LR+L++L ++++NI  I    F  +  I+TL L  N +
Sbjct: 158 GVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHL 217

Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLR---ILDLSHNKLRTLGDYS--------- 210
                L +           G+   C   + LR   + D+   +    G +S         
Sbjct: 218 YCDCHLAWLSDWLRQRRTIGQFTLCMAPVHLRGFSVADVQKKEYVCPGPHSEAPACNANS 277

Query: 211 -------------------GITKF-----RRLQNLHLENNEISQIAPNAFVALSSLRILN 246
                              G+T+        +  + LE N I  I   AF+    L+ ++
Sbjct: 278 LSCPSACSCSNNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFIQYKKLKRID 337

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           IS N +  +    F   + ++ +    N + E+ +GLF  L  L +L L++N +  N + 
Sbjct: 338 ISKNQISDIAPDAFQGLKSLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKI--NCLR 395

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
             TF  L  L +L+L +N+L  I    F  L  +Q L L  N   ++ D     L +   
Sbjct: 396 VNTFQDLQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNP--FVCDCHLKWLAD--- 450

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD--LSSNAIVE 424
            YL +N I        +G    S   L+N  +  I SK F+ CS  ++     SS   ++
Sbjct: 451 -YLQDNPIE------TSGARCSSPRRLANKRISQIKSKKFR-CSGSEDYRNRFSSECFMD 502

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL-SSGMLYELPSL 483
           +            +D    ++S+I +      +  TDLRL DN+I  L ++G+  +LP+L
Sbjct: 503 LVCPEKCRCEGTIVDCSNQKLSRIPS---HLPEYTTDLRLNDNDIAVLEATGIFKKLPNL 559

Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWF 543
             +NLS N+I ++                         G F   A +  L L+ N L   
Sbjct: 560 RKINLSNNRIKEVR-----------------------EGAFDGAAGVQELMLTGNQLETM 596

Query: 544 DYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEV 601
              M  G   LK L +  N IS +NN  +   GLS                     SV +
Sbjct: 597 HGRMFRGLSGLKTLMLRSNLISCVNN--DTFAGLS---------------------SVRL 633

Query: 602 LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
           L + +N I ++ P  F    +L+ +++ +N                             P
Sbjct: 634 LSLYDNRITTISPGAFTTLVSLSTINLLSN-----------------------------P 664

Query: 662 FDCDCSMDWLP-------IINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAA 714
           F+C+C M WL        I++ N       Q P  +                 +P  + A
Sbjct: 665 FNCNCHMAWLGRWLRKRRIVSGNP----RCQKPFFLK---------------EIPIQDVA 705

Query: 715 PSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPR 774
              + C  +          E ++C     CP+ C+C         VV CS + + T+P  
Sbjct: 706 IQDFTCEGN----------EENSCQLSPRCPEQCTCVE------TVVRCSNRGLHTLPKG 749

Query: 775 IPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLEN 834
           +P D T +YL+GN    +P  +   R+                         L ++ L N
Sbjct: 750 MPKDVTELYLEGNHLTAVPKELSTFRQ-------------------------LTLIDLSN 784

Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN 894
           N I+    + F N+  LS L L  NR+  I    FN L SL+VL L GN + S      N
Sbjct: 785 NSISMLTNHTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN 844

Query: 895 TNSMLRKVYLGNNPFSCSCATLQELQTWI 923
             + L  + LG NP  C C +L+ L  WI
Sbjct: 845 DLTSLSHLALGINPLHCDC-SLRWLSEWI 872

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|P70389|ALS_MOUSE Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 147/487 (30%), Positives = 229/487 (47%), Gaps = 27/487 (5%)

Query: 88  VDVFSGLRNLKRLT----INTRNLQWDKSKKLDLVP-GSLDGLRELQVLNISSSNIKSIS 142
           + VF   RNL +L     ++TR L W     L  +P  +   L  L  LN+  S ++S+ 
Sbjct: 56  LSVFCSSRNLTQLPDGIPVSTRAL-WLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLE 114

Query: 143 DDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG-------EKIECSGGMDLRI 195
                 L N+  L+L RN +R +    F    + A  + G       E+    G   L  
Sbjct: 115 PQALLGLQNLYHLHLERNLLRSLAAGLFRHTPSLASLSLGNNLLGRLEEGLFRGLSHLWD 174

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLH---LENNEISQIAPNAFVALSSLRILNISSNHL 252
           L+L  N L  L D    T F+ L NLH   L  N+++ + P     L  LR L++S N L
Sbjct: 175 LNLGWNSLVVLPD----TVFQGLGNLHELVLAGNKLTYLQPALLCGLGELRELDLSRNAL 230

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
            S+   +F     + ++Y  +N +  ++   F  ++ L  LDLS N ++   + E TF G
Sbjct: 231 RSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAG--LLEDTFPG 288

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
           L+ L +L L++N +T +  +TFKDL FL+ L L +N I  + +  F  L  L  + L++N
Sbjct: 289 LLGLHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDN 348

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSE 431
           +IH +    F GL+ ++ + LS N L ++    F+    L  L L  + +  I     + 
Sbjct: 349 QIHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAG 408

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           L  L+ L L +N IS IE  S   L +L +L L  N + +L   +   L  LE L LS N
Sbjct: 409 LSGLRRLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLLSNN 468

Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFL-TDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
           ++  +        +R   + L  N L T   G+F+ L +L +LNL  N L  F     PG
Sbjct: 469 QLTMLSEDVLGPLQRAFWLDLSHNRLETPAEGLFSSLGRLRYLNLRNNSLQTF--VPQPG 526

Query: 551 NLK-WLD 556
             + WLD
Sbjct: 527 LERLWLD 533

May have an important role in regulating the access of circulating IGFs to the tissues.

Mus musculus (taxid: 10090)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 210/877 (23%), Positives = 349/877 (39%), Gaps = 170/877 (19%)

Query: 151 NIQTLNLSRNSIRDIDTLGFA----VRRASAESNSGEKIECSGGMDLRILD---LSHNKL 203
           N + L+L RN+I  I  + FA    +R    E N    IE     DL+ L+   L+ NKL
Sbjct: 62  NAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKL 121

Query: 204 RTLGD--YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFS 261
           + L +  +    K  RL    L  N+I  I   AF  ++ ++ L + +NH+  + +G F 
Sbjct: 122 QVLPELLFQSTPKLTRLD---LSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFR 178

Query: 262 SCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS--------SNHIDETTFIGL 313
           + RD+  +    N++  +    F+ + ++  L L SNHL         S+ + +   +G 
Sbjct: 179 ALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQ 238

Query: 314 IRLII--LNLSNNELTRIDAKTF--------------KDLVFLQRLDLRNNSI-----GY 352
             L +  ++L    +  +  K +                +         NN +     G 
Sbjct: 239 FTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTCSNNIVDCRGKGL 298

Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
           +E  A L    +  I L +N I  I A  F     L ++ +S N + +I   AF+   +L
Sbjct: 299 MEIPANLP-EGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSL 357

Query: 413 KELDLSSNAIVEIPSALSE-LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
             L L  N I EI   L + L  L+ L L  N+I+ +   +F++LQ L  L L DN +  
Sbjct: 358 TSLVLYGNKITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQT 417

Query: 472 LSSGMLYELPSLEVLNLSKNKI---------------HQIEIGTFE-------KNKRLAA 509
           +S G+   L S++ L+L++N                 + IE             NKR++ 
Sbjct: 418 ISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQ 477

Query: 510 I---------------RLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
           I               R  S    D+        +   ++ S   LV    + +P  +  
Sbjct: 478 IKSKKFRCSGSEDYRSRFSSECFMDLVCPEKCRCEGTIVDCSNQKLVRIP-SHLPEYVTD 536

Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSV 612
           L ++ N +S L      K   +++ ++ S+N+I E+ E +     SV+ L +  N +++V
Sbjct: 537 LRLNDNEVSVLEATGIFKKLPNLRKINLSNNKIKEVREGAFDGAASVQELMLTGNQLETV 596

Query: 613 KPHTFFDKSNLARVDIYANDI------TKLDLTALRLKPVPQNK-------------TLP 653
               F   S L  + + +N I      T   L+++RL  +  N+             +L 
Sbjct: 597 HGRVFRGLSGLKTLMLRSNLIGCVSNDTFAGLSSVRLLSLYDNRITTITPGAFTTLVSLS 656

Query: 654 EFYLGGNPFDCDCSMDWLP-------IINNNTSPSMERQYPKIMDLDNVVCKMTYSRGST 706
              L  NPF+C+C + WL        I++ N       Q P  +                
Sbjct: 657 TINLLSNPFNCNCHLAWLGKWLRKRRIVSGNP----RCQKPFFLK--------------- 697

Query: 707 HLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ 766
            +P  + A   + C  +          E  +C     CP+ C+C         VV CS +
Sbjct: 698 EIPIQDVAIQDFTCDGN----------EESSCQLSPRCPEQCTCME------TVVRCSNK 741

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
            +  +P  +P D T +YL+GN    +P                         +  + L  
Sbjct: 742 GLRALPRGMPKDVTELYLEGNHLTAVP-------------------------RELSALRH 776

Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
           L ++ L NN I+    Y F N+  LS L L  NR+  I    FN L SL+VL L GN + 
Sbjct: 777 LTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDIS 836

Query: 887 SFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           S      N  + L  + LG NP  C C +L+ L  W+
Sbjct: 837 SVPEGSFNDLTSLSHLALGTNPLHCDC-SLRWLSEWV 872

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|O02833|ALS_PAPHA Insulin-like growth factor-binding protein complex acid labile subunit OS=Papio hamadryas GN=IGFALS PE=2 SV=1

 Score =  153 bits (387), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/503 (28%), Positives = 231/503 (45%), Gaps = 38/503 (7%)

Query: 5   PENCSWKMENESMNRISVTC---NLNYLGKG--GGSNLSFVPTDLITKLNIDCDATVLLD 59
           P  C+   ++E +N +SV C   NL  L  G  GG+   ++ ++ +              
Sbjct: 42  PATCACSYDDE-VNELSVFCSSRNLTRLPDGIPGGTQALWLDSNNL-------------- 86

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           SSI   +F+N+ SL  L +   +L  L      GL NL  L +    L+        L  
Sbjct: 87  SSIPPAAFRNLSSLAFLNLQGGQLGSLEPQALLGLENLCHLHLERNQLR-------SLAV 139

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF----AVRRA 175
           G+      L +L +S++ +  + D +F  L N+  LNL  NS+  +    F     +R  
Sbjct: 140 GTFAYTPALALLGLSNNRLSRLEDGLFEGLGNLWDLNLGWNSLAVLPDAAFRGLGGLREL 199

Query: 176 SAESNSGEKIEC---SGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA 232
               N    ++    SG  +LR LDLS N LR +   +   +  RLQ L+L+ N I+ +A
Sbjct: 200 VLAGNRLAYLQPALFSGLAELRELDLSRNALRAI-KANVFAQLPRLQKLYLDRNLIAAVA 258

Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
           P AF+ L +LR L++S N +  L E  F     +  +    N++  L    F  L  L  
Sbjct: 259 PGAFLGLKALRWLDLSHNRVAGLLEDTFPGLLGLRVLRLSHNAIASLRPRTFEDLHFLEE 318

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
           L L  N +    + E +F GL +L +L L +N+L  +    F  L  +  ++L  N +  
Sbjct: 319 LQLGHNRI--RQLAERSFEGLGQLEVLTLDHNQLQEVKVGAFLGLTNVAVMNLSGNCLRN 376

Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
           + +  F  L  LH+++L  + +  I  H F GL  L +L L +N LV I+ ++    + L
Sbjct: 377 LPEQVFRGLGKLHSLHLEGSCLGRIRPHTFAGLSGLRRLFLKDNGLVGIEEQSLWGLAEL 436

Query: 413 KELDLSSNAIVEIPSALSE-LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
            ELDL+SN +  +P  L + L  L+ L L  N+++++   +   LQ+   L +  N +  
Sbjct: 437 LELDLTSNQLTHLPHQLFQGLGKLEYLLLSHNRLAELPADALGPLQRAFWLDVSHNRLEA 496

Query: 472 LSSGMLYELPSLEVLNLSKNKIH 494
           L   +L  L  L  LNL  N + 
Sbjct: 497 LPGSLLASLGRLRYLNLRNNSLR 519

Involved in protein-protein interactions that result in protein complexes, receptor-ligand binding or cell adhesion.

Papio hamadryas (taxid: 9557)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 173/657 (26%), Positives = 268/657 (40%), Gaps = 108/657 (16%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           +RL+L  N+I  I  N F  L  L  + L EN+I  +    F+ +  L +L L+ N L  
Sbjct: 64  ERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQV 123

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           +    F+N  AL  LDLS N++  +P  A      LK L L +NQIS IE G+F+ L+ L
Sbjct: 124 LPELLFQNNQALSRLDLSENSLQAVPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGL 183

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI--------------HQIEIGTFEKNK 505
             L L +NNI  +       +P L    L  N +               +  IG F +  
Sbjct: 184 EVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCS 243

Query: 506 RLAAIR-------LDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIH 558
             A++R         S F     G     AQ+    LS         AM   +   +D  
Sbjct: 244 GPASLRGLNVAEVQKSEFSCSGQG---EAAQVPACTLSSGSCP----AMCSCSNGIVDCR 296

Query: 559 GNYISS---------------LNNYYEIKDGL-----SIKNLDASHNRILEISE------ 592
           G  +++               LN    I  G       ++ +D S+N+I EI+       
Sbjct: 297 GKGLTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGL 356

Query: 593 -------------LSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDIYAND 632
                          +P  V       ++L +N N I  ++P  F D  NL+ + +Y N 
Sbjct: 357 RSLNSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNK 416

Query: 633 ITKL---DLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKI 689
           I  L     T+LR         +   +L  NPF CDC++ WL      T+P +E    + 
Sbjct: 417 IQSLAKGTFTSLR--------AIQTLHLAQNPFICDCNLKWLADF-LRTNP-IETTGARC 466

Query: 690 MDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPY--DIHCFALCHCCEFDACDCEMTCPKN 747
                +  K      S     S  A  QY  P   D H  +         C  ++ CP  
Sbjct: 467 ASPRRLANKRIGQIKSKKFRCS--AKEQYFIPGTEDYHLNS--------ECTSDVACPHK 516

Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGRKNMLSL 806
           C C        +VV+CS  ++S +P RIP   T + L+ N    +    +F    ++  +
Sbjct: 517 CRC------EASVVECSGLKLSKIPERIPQSTTELRLNNNEISILEATGLFKKLSHLKKI 570

Query: 807 YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
            ++N+++  I + TF G +S+  LHL  N +       F  L+ L  L L+ NRI  I N
Sbjct: 571 NLSNNKVSEIEDGTFEGATSVSELHLTANQLESVRSGMFRGLDGLRTLMLRNNRISCIHN 630

Query: 867 GTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
            +F  L ++++L L  N + +      +T   L  + L  NPF+C+C  L  L  W+
Sbjct: 631 DSFTGLRNVRLLSLYDNHITTISPGAFDTLQALSTLNLLANPFNCNC-QLAWLGDWL 686

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 223/902 (24%), Positives = 349/902 (38%), Gaps = 165/902 (18%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI----------------- 102
           S I   +FQ++  LE L+++  KL  LP  +F     L RL +                 
Sbjct: 98  SIIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKLTRLDLSENQIQGIPRKAFRGVT 157

Query: 103 NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
             +NLQ D +    +  G+   LR+L++L ++++NI  I    F  +  I+TL L  N +
Sbjct: 158 GVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNISRILVTSFNHMPKIRTLRLHSNHL 217

Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLR---ILDLSHNKLRTLGDYSGITKFRRLQ 219
                L +           G+   C   + LR   + D+   +    G +S         
Sbjct: 218 YCDCHLAWLSDWLRQRRTIGQFTLCMAPVHLRGFSVADVQKKEYVCPGPHSEAPAC---- 273

Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
                 N  S   P+A     S  I++     L  +P  L      I EI  ++NS+  +
Sbjct: 274 ------NANSLSCPSACSC--SNNIVDCRGKGLTEIPANLPEG---IVEIRLEQNSIKSI 322

Query: 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF 339
             G F + ++L  +D+S N +S   I    F GL  L  L L  N++T I    F  LV 
Sbjct: 323 PAGAFTQYKKLKRIDISKNQISD--IAPDAFQGLKSLTSLVLYGNKITEIPKGLFDGLVS 380

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           LQ L L  N I  +  N F  L NL+ + L +N++  I+  LF  L  +  L L+ N  V
Sbjct: 381 LQLLLLNANKINCLRVNTFQDLQNLNLLSLYDNKLQTISKGLFVPLQSIQTLHLAQNPFV 440

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
                   +C      D   +  +E   A    P      L   +IS+I++  F+     
Sbjct: 441 C-------DCHLKWLADYLQDNPIETSGARCSSP----RRLANKRISQIKSKKFR-CSGS 488

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLE-------VLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
            D R         SS    +L   E       +++ S  K+ +I     E    L   RL
Sbjct: 489 EDYR------NRFSSECFMDLVCPEKCRCEGTIVDCSNQKLARIPSHLPEYTTDL---RL 539

Query: 513 DSNFLT--DINGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY 568
           + N ++  +  G+F  L  L  +NLS N +         G   ++ L + GN + ++   
Sbjct: 540 NDNDISVLEATGIFKKLPNLRKINLSNNRIKEVREGAFDGAAGVQELMLTGNQLETM--- 596

Query: 569 YEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
                          H R+     LS   S++ L + +NLI  V   TF   S++  + +
Sbjct: 597 ---------------HGRMFR--GLS---SLKTLMLRSNLISCVSNDTFAGLSSVRLLSL 636

Query: 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLP-------IINNNTSPS 681
           Y N IT +   A          +L    L  NPF+C+C M WL        I++ N    
Sbjct: 637 YDNRITTITPGAFTTL-----VSLSTINLLSNPFNCNCHMAWLGRWLRKRRIVSGNP--- 688

Query: 682 MERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCE 741
              Q P  +                 +P  + A   + C  +          E  +C   
Sbjct: 689 -RCQKPFFLK---------------EIPIQDVAIQDFTCDGN----------EESSCQLS 722

Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
             CP+ C+C         VV CS + +  +P  +P D T +YL+GN    +P  +   R+
Sbjct: 723 PRCPEQCTCVE------TVVRCSNRGLHALPKGMPKDVTELYLEGNHLTAVPKELSAFRQ 776

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
                                    L ++ L NN I+    + F N+  LS L L  NR+
Sbjct: 777 -------------------------LTLIDLSNNSISMLTNHTFSNMSHLSTLILSYNRL 811

Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
             I    FN L SL+VL L GN + S      N  + L  + LG NP  C C +L+ L  
Sbjct: 812 RCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLALGTNPLHCDC-SLRWLSE 870

Query: 922 WI 923
           W+
Sbjct: 871 WV 872

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 171/652 (26%), Positives = 265/652 (40%), Gaps = 98/652 (15%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           +RL+L  N+I  I  N F  L  L  + L EN+I  +    F+ +  L +L L+ N L  
Sbjct: 64  ERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHM 123

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           +    F+N  AL  LDLS NAI  IP  A      LK L L +NQIS IE G+F+ L+ L
Sbjct: 124 LPELLFQNNQALSRLDLSENAIQAIPRKAFRGATDLKNLQLDKNQISCIEEGAFRALRGL 183

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI--------------HQIEIGTFEKNK 505
             L L +NNI  +       +P L    L  N +               +  IG F +  
Sbjct: 184 EVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCS 243

Query: 506 RLAAIR-------LDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD-I 557
             A++R         S F     G    +      + S   +      +V    K L  I
Sbjct: 244 GPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIVDCRGKGLTAI 303

Query: 558 HGNYISS-------LNNYYEIKDGL-----SIKNLDASHNRILEISE------------- 592
             N   +       LN    I  G       ++ +D S+N+I EI+              
Sbjct: 304 PANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLV 363

Query: 593 ------LSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL--- 636
                   +P  V       ++L +N N I  ++P  F D  NL+ + +Y N I  L   
Sbjct: 364 LYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSLAKG 423

Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV 696
             T+LR         +   +L  NPF CDC++ WL      T+P +E    +      + 
Sbjct: 424 TFTSLR--------AIQTLHLAQNPFICDCNLKWLADF-LRTNP-IETSGARCASPRRLA 473

Query: 697 CKMTYSRGSTHLPASEAAPSQYLCP----YDIHCFALCHCCEFDACDCEMTCPKNCSCFH 752
            K      S     S  A  QY  P    Y ++            C+ ++ CP  C C  
Sbjct: 474 NKRIGQIKSKKFRCS--AKEQYFIPGTEDYQLN----------SECNSDVVCPHKCRC-- 519

Query: 753 DQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGRKNMLSLYVNNS 811
                 NVV+CS  +++ +P RIP     + L+ N    +    +F    ++  + ++N+
Sbjct: 520 ----EANVVECSSLKLTKIPERIPQSTAELRLNNNEISILEATGMFKKLTHLKKINLSNN 575

Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNA 871
           ++  I +  F G +S+  LHL  N +       F  L+ L  L L+ NRI  I N +F  
Sbjct: 576 KVSEIEDGAFEGAASVSELHLTANQLESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTG 635

Query: 872 LISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           L ++++L L  N++ +      +T   L  + L  NPF+C+C  L  L  W+
Sbjct: 636 LRNVRLLSLYDNQITTVSPGAFDTLQSLSTLNLLANPFNCNC-QLAWLGGWL 686

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Homo sapiens (taxid: 9606)

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score =  150 bits (380), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 218/902 (24%), Positives = 352/902 (39%), Gaps = 163/902 (18%)

Query: 95  RNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQT 154
           RN +RL +N  N+   +  K+D       GLR L+VL +  + I +I    F  L  ++ 
Sbjct: 55  RNTERLDLNGNNIT--RITKIDFA-----GLRHLRVLQLMENRISTIERGAFQDLKELER 107

Query: 155 LNLSRNSIRDIDTLGF----AVRRASAESNSGEKI---ECSGGMDLRILDLSHNKLRTLG 207
           L L+RN+++    L F     + R     N  + I      G +D++ L L +N++  + 
Sbjct: 108 LRLNRNNLQLFPELLFLGTAKLYRLDLSENQIQAIPRKAFRGAVDIKNLQLDYNQISCIE 167

Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN------HLVSLPE---- 257
           D       R L+ L L NN I++++  +F  +  LR   + SN      HL  L +    
Sbjct: 168 D-GAFRALRDLEVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQ 226

Query: 258 ----GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL-----SSNHIDET 308
               GL++ C   S +     + V+    +    +  +    S  H       SN+I + 
Sbjct: 227 RPRVGLYTQCMGPSHLRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVDC 286

Query: 309 TFIGLIRLII--------LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
              GL  +          + L  N +  I    F     L+RLDL NN I  +  +AF  
Sbjct: 287 RGKGLTEIPTNLPETITEIRLEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQG 346

Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           L +L+++ L  N+I  +   LF GL+ L  L L+ N +  +   AF++   L  L L  N
Sbjct: 347 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN 406

Query: 421 AIVEIPSA-LSELPFLKTLDLGEN---------------QISKIENGSFKNLQQLTDLRL 464
            +  +     S L  ++T+ L +N                 + IE    +     +  RL
Sbjct: 407 KLQTVAKGTFSALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGAR---CTSPRRL 463

Query: 465 VDNNIGNLSSGMLY---------ELPSLEVLNLSKNKIHQIEIGTFE-KNKRL------- 507
            +  IG + S             +L      +L+  +  + E  T +  N+RL       
Sbjct: 464 ANKRIGQIKSKKFRCSGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQRLNKIPDHI 523

Query: 508 ----AAIRLDSNFLT--DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNY 561
               A +RL++N  T  +  G+F  L QL  +N S N              K  DI    
Sbjct: 524 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN--------------KITDIEEGA 569

Query: 562 ISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKS 621
               +   EI   L+   L+   +++ +  E     S++ L + +N I  V   +F    
Sbjct: 570 FEGASGVNEIL--LTSNRLENVQHKMFKGLE-----SLKTLMLRSNRISCVGNDSFIGLG 622

Query: 622 NLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPS 681
           ++  + +Y N IT +   A          +L    L  NPF+C+C + WL          
Sbjct: 623 SVRLLSLYDNQITTVAPGAFD-----SLHSLSTLNLLANPFNCNCHLAWL---------- 667

Query: 682 MERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCE 741
            E    K +   N  C+  Y      +P  + A   + C             + ++C   
Sbjct: 668 GEWLRRKRIVTGNPRCQKPYFL--KEIPIQDVAIQDFTCDDGN---------DDNSCSPL 716

Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
             CP  C+C         VV CS + +  +P  IP D T +YLDGN F  +P        
Sbjct: 717 SRCPSECTCLD------TVVRCSNKGLKVLPKGIPKDVTELYLDGNQFTLVPKE------ 764

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
             LS Y                   L ++ L NN I+      F N+ +L  L L  NR+
Sbjct: 765 --LSNY-----------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 805

Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
             I   TF+ L SL++L L GN +        N  S L  + +G NP  C C  +Q L  
Sbjct: 806 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSD 864

Query: 922 WI 923
           W+
Sbjct: 865 WV 866

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Mus musculus (taxid: 10090)

>sp|P35859|ALS_RAT Insulin-like growth factor-binding protein complex acid labile subunit OS=Rattus norvegicus GN=Igfals PE=1 SV=1

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 142/532 (26%), Positives = 239/532 (44%), Gaps = 55/532 (10%)

Query: 3   EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDL-ITKLNIDCDATVLLDSS 61
           + P  C+   ++ + + +SV C+          NL+ +P D+ ++   +  D   L  SS
Sbjct: 40  QCPVACTCSHDDYT-DELSVFCS--------SKNLTHLPDDIPVSTRALWLDGNNL--SS 88

Query: 62  ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP-- 119
           I + +FQN+ SL+ L +    L  L      GL+NL  L +    L+          P  
Sbjct: 89  IPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYYLHLERNRLRNLAVGLFTHTPSL 148

Query: 120 ---------------GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD 164
                          G   GL  L  LN+  +++  + D VF  L N+  L L+ N +  
Sbjct: 149 ASLSLSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTY 208

Query: 165 IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLE 224
           +    F                C  G +LR LDLS N LR++   +      RLQ L+L+
Sbjct: 209 LQPALF----------------CGLG-ELRELDLSRNALRSV-KANVFVHLPRLQKLYLD 250

Query: 225 NNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF 284
            N I+ +AP AF+ + +LR L++S N +  L E  F     +  +    N++  L    F
Sbjct: 251 RNLITAVAPGAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTF 310

Query: 285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLD 344
             L  L  L L  N +    + E TF GL +L +L L++N++T +    F  L  +  ++
Sbjct: 311 KDLHFLEELQLGHNRI--RQLGERTFEGLGQLEVLTLNDNQITEVRVGAFSGLFNVAVMN 368

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
           L  N +  + +  F  L  LH+++L  + + H+  H F GL  L +L L +N + +I+ +
Sbjct: 369 LSGNCLRSLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQ 428

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSE-LPFLKTLDLGENQISKIENGSFKNLQQLTDLR 463
           +    S L ELDL++N +  +P  L + L  L+ L L  NQ++ +       LQ+   L 
Sbjct: 429 SLAGLSELLELDLTTNRLTHLPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLD 488

Query: 464 LVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
           +  N++  L+ G+   L  +  L+L  N +      TF     L  + LD+N
Sbjct: 489 ISHNHLETLAEGLFSSLGRVRYLSLRNNSLQ-----TFSPQPGLERLWLDAN 535

May have an important role in regulating the access of circulating IGFs to the tissues.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1344
242020013	1317	toll, putative [Pediculus humanus corpor	0.947	0.966	0.558	0.0
91076478	1310	PREDICTED: similar to 18 wheeler [Tribol	0.945	0.970	0.558	0.0
328719612	1336	PREDICTED: protein toll-like [Acyrthosip	0.941	0.946	0.517	0.0
182511220	1295	18 wheeler precursor [Bombyx mori] gi|18	0.923	0.958	0.510	0.0
357617686	1295	18 wheeler [Danaus plexippus]	0.924	0.959	0.513	0.0
350413730	1393	PREDICTED: protein toll-like [Bombus imp	0.937	0.904	0.487	0.0
170062865	1353	toll [Culex quinquefasciatus] gi|1678806	0.918	0.912	0.479	0.0
345485683	1270	PREDICTED: LOW QUALITY PROTEIN: protein	0.847	0.896	0.519	0.0
61656216	1370	18-wheeler precursor [Apis mellifera] gi	0.927	0.909	0.496	0.0
380027964	1371	PREDICTED: protein toll-like [Apis flore	0.924	0.906	0.494	0.0

>gi|242020013|ref|XP_002430452.1| toll, putative [Pediculus humanus corporis] gi|212515590|gb|EEB17714.1| toll, putative [Pediculus humanus corporis]

 Score = 1481 bits (3833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1357 (55%), Positives = 975/1357 (71%), Gaps = 84/1357 (6%)

Query: 2    FEVPENCSWKMENESMN-RISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDS 60
            +E P +C W   NE+ + +++V+C    L   G   L+ +  D I +L + C   V  +S
Sbjct: 31   YEPPSDCVWSSGNETTSSKMTVSCTYKNLDVNG---LTSLQPDGILRLTVTCRENVFHES 87

Query: 61   SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
             +   +   +  LEEL + +CK+++L    F GLR L++L+++TRN  W + K LD+  G
Sbjct: 88   FVP-PAVNRLLHLEELTLDSCKILKLLPIGFDGLRELRKLSVHTRNSDWSQGKVLDVSEG 146

Query: 121  SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
            SL GL+EL VL++  SNIK+I D+V+C L N+QTLNL+RN IRD++ +GF  R +   S+
Sbjct: 147  SLSGLKELHVLDLGWSNIKAIPDEVYCPLVNLQTLNLTRNRIRDVNKIGFGTRISRESSS 206

Query: 181  SGEKI-ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
            S   + ECSGG+D+R LD+S+N ++ L + S + K +RLQ L+L+NN +S+I   AF  L
Sbjct: 207  SSSSVAECSGGIDIRHLDVSYNDIKLLKNDSDLIKLKRLQGLYLQNNLLSEIGSGAFAGL 266

Query: 240  SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
             SLR+LNIS+N+L SLPEGLF S R++ EIY Q N L EL+ G+FH+LEQLLVLDLS N 
Sbjct: 267  LSLRVLNISNNNLRSLPEGLFVSSRELREIYLQNNGLTELAAGIFHRLEQLLVLDLSGNM 326

Query: 300  LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
            L+SNH+D+ TF+GLIRLI+LNLS+N L RI+AKTFKDL FLQ LDLRNNSI +I+DNAFL
Sbjct: 327  LTSNHVDDGTFLGLIRLIVLNLSHNSLNRIEAKTFKDLFFLQILDLRNNSIQHIQDNAFL 386

Query: 360  SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
             LYNLHT+ L+ENR+H+I AHLFNGL+VLSKLTLS N++++ID +AF+NCS LKELDLSS
Sbjct: 387  PLYNLHTLNLAENRLHNIDAHLFNGLFVLSKLTLSGNMIISIDQQAFRNCSDLKELDLSS 446

Query: 420  NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE 479
            NA+ ++P AL EL FLKTLDLGEN+IS   NGSFK L QLT LRL+DN+IGNL+ GM  +
Sbjct: 447  NALEKVPEALRELSFLKTLDLGENKISGFRNGSFKGLSQLTGLRLIDNDIGNLTKGMFSD 506

Query: 480  LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENH 539
            LPSL+VLNL+KNKI QIE GTF  N +L AIRLD+NF+ DINGVF+ L  LLWLNLSENH
Sbjct: 507  LPSLQVLNLAKNKIQQIEHGTFHYNTQLEAIRLDANFIVDINGVFSSLQSLLWLNLSENH 566

Query: 540  LVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
            LVWFDYA +P NLKWLD+HGN+I SL NYY+I+D L ++ LDASHNRI  IS LSIPNSV
Sbjct: 567  LVWFDYAFIPLNLKWLDVHGNFIESLGNYYKIQDELHVRTLDASHNRISSISPLSIPNSV 626

Query: 600  EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG 659
            E++FINNN I +V P+TF+DKSNLARVD+YAN I KLD+ +LRLK VP+NKTLPEFY+GG
Sbjct: 627  ELVFINNNFITNVHPNTFYDKSNLARVDMYANQIEKLDINSLRLKQVPENKTLPEFYIGG 686

Query: 660  NPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYL 719
            NPF CDC+MDWL +INN T     RQYPK+MDLDNV+C++T+SRGST +P +E   S +L
Sbjct: 687  NPFHCDCTMDWLGMINNMTL----RQYPKVMDLDNVMCRLTFSRGSTLVPTTETKSSDFL 742

Query: 720  CPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA 779
            C YD HCF LCHCC++DACDCEMTCP+NCSC+HDQ W TN+V+CS ++++ +P RIPMDA
Sbjct: 743  CKYDTHCFTLCHCCDYDACDCEMTCPQNCSCYHDQLWTTNIVECSNRKLNEIPVRIPMDA 802

Query: 780  THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
              VYLDGN  K + NHVFIGRKNM  LYVNNS +E I N+TFNGL+SLQ+LHLE+N +  
Sbjct: 803  NEVYLDGNHLKELQNHVFIGRKNMRVLYVNNSHVESIQNRTFNGLNSLQILHLEDNNLHA 862

Query: 840  FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
              G+EF++L  L ELYLQ N+I +I N T   L SL++L+LD NRL +F  + L  N+ L
Sbjct: 863  LKGFEFEHLSHLRELYLQNNKISHIGNMTLLPLRSLEILRLDNNRLVTFPVWQLTLNTYL 922

Query: 900  RKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCT 959
             +V L NN +SC C  L ELQTWI DN  KV D  +I CV + S PP R+ ID+N+T C+
Sbjct: 923  VEVTLSNNQWSCRCKFLVELQTWISDNEPKVTDSSEIMCVDNNSRPPYRRSIDINNTACS 982

Query: 960  EYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNF 1019
            +YY+ SSVI S+MVS Y P +I+T   F++ L +++ +F+F+D  +VW+YTKYG+R++NF
Sbjct: 983  DYYSGSSVIQSLMVSHYWPMVIVTLSTFVLILFVMMLVFIFRDSLKVWVYTKYGVRIWNF 1042

Query: 1020 KATSSKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPY 1071
            K        EDREKL        PKDEEFVLQSIVAELEHG+PS+QLCLHYRDLP  SPY
Sbjct: 1043 KGGMGS--CEDREKLYDGYVCYSPKDEEFVLQSIVAELEHGSPSFQLCLHYRDLPQPSPY 1100

Query: 1072 LQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQT 1131
            +Q   TSPVV+EAAEASRRVILVL++NFLQTEW                           
Sbjct: 1101 MQ--NTSPVVVEAAEASRRVILVLSRNFLQTEW--------------------------- 1131

Query: 1132 EWSRSDFRSAIHEALTTKTHKLVLVEE-NIVPEAESDIELKPYLKSCMKIRWGEKRFWER 1190
              SR +FR A+HEAL  +  KLVLVEE + +PEAE D +L+PYLK+  ++RWGEKRFWER
Sbjct: 1132 --SRFEFRQALHEALKGRIFKLVLVEEGSSLPEAELDPDLRPYLKTGARVRWGEKRFWER 1189

Query: 1191 LRYAMPTCD-NSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTV 1249
            LRYAMP+ D +  KS NY                          ++      P    + V
Sbjct: 1190 LRYAMPSGDKHHTKSTNYPA-----------------------MAAAMNDMAPPAYCANV 1226

Query: 1250 ISKNHNQEDLAYSSATTATPSPKP-HRLHCYTNASD-KPVSDHIYSSIDTPEYQEYASRT 1307
               + + +D  YSSA TATPSPKP HR    +N  + +P S+HIYSSID+    +Y++  
Sbjct: 1227 PPTSQDVDDANYSSAATATPSPKPSHRHQSSSNDQNSRPNSEHIYSSIDS----DYST-L 1281

Query: 1308 DRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYLV 1344
            +RNS RR NG +      W PA  +++DS+GVQAYLV
Sbjct: 1282 ERNSNRRQNGVLQRPGAPWRPAD-SIVDSSGVQAYLV 1317

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076478|ref|XP_972409.1| PREDICTED: similar to 18 wheeler [Tribolium castaneum] gi|270002880|gb|EEZ99327.1| toll-7-like protein [Tribolium castaneum]

 Score = 1477 bits (3823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 761/1362 (55%), Positives = 968/1362 (71%), Gaps = 91/1362 (6%)

Query: 2    FEVPENCSWKMENE--SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLD 59
            ++ PE CSW  +N   S ++ SVTC +  L  G G+N+S +P ++ +KL + C   +  +
Sbjct: 21   YDGPEGCSWLPDNNDTSSSKFSVTCRVRTL-DGTGTNISALPAEITSKLRLLCSEVLFFE 79

Query: 60   SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
            S++ T+  Q ++ LEEL+I+NCKL+ +  + F GL N+KRL INT N  W  SK LD+  
Sbjct: 80   SALPTQGLQRLHELEELQITNCKLLNIEANSFEGLYNVKRLAINTFNSDWSSSKTLDINA 139

Query: 120  GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
             SL GL+ELQ+L+++++NI+++ D  FCSLAN+QTLNL+RN I+  +  GF +       
Sbjct: 140  DSLKGLKELQILDLANNNIRAVVDGTFCSLANLQTLNLTRNRIKSPERFGFNLP------ 193

Query: 180  NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                  ECS   +L+ LDLSHN+LR L + SG ++ RRLQ L L+NN IS I+  A   L
Sbjct: 194  ------ECSNS-ELQNLDLSHNELRALTENSGFSRLRRLQQLDLKNNNISDISGEALAGL 246

Query: 240  SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
             SLRILN+++N + SLPEGLF+  R++ EI+ Q NSL  L++GLFH+LEQLL+LDLS N 
Sbjct: 247  VSLRILNLANNKIESLPEGLFAGSRELREIHLQNNSLFSLAKGLFHRLEQLLILDLSGNQ 306

Query: 300  LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
            L+SNH+D  TF GLIRLI+LNLS+N LTRID+KTFKDL FLQ LDLRNNSIG+IEDNAF+
Sbjct: 307  LTSNHVDAGTFAGLIRLIVLNLSHNALTRIDSKTFKDLYFLQILDLRNNSIGFIEDNAFI 366

Query: 360  SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
             LYNLHT+ L+ENR++ I   LFNGL+VLSKLTL+NNL+VNIDS AF+NCSALKELDLSS
Sbjct: 367  PLYNLHTLNLAENRLNTIGPLLFNGLFVLSKLTLNNNLVVNIDSTAFRNCSALKELDLSS 426

Query: 420  NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE 479
            NA+ E+P AL EL FLKTLDLGENQIS   NGSFKNL QLT LRL+DNNIGNL+ GML++
Sbjct: 427  NALQEVPDALKELSFLKTLDLGENQISDFRNGSFKNLNQLTGLRLIDNNIGNLTRGMLWD 486

Query: 480  LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENH 539
            LPSL+VLNL+KNKI  IE GTF++N +L AIRLD NFLTDINGVF  LA LLWLNLS+NH
Sbjct: 487  LPSLQVLNLAKNKIQSIERGTFDRNTQLEAIRLDENFLTDINGVFATLASLLWLNLSDNH 546

Query: 540  LVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
            LVWFDYA +P NLKWLDIH N+I  L NYY+I+D + +K LDASHNRI EIS +SIPNSV
Sbjct: 547  LVWFDYAFIPSNLKWLDIHRNFIEHLGNYYKIQDEIRVKTLDASHNRITEISPMSIPNSV 606

Query: 600  EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG 659
            E+LFINNN IK VKP+TF DK++LARVD+YAN++  LD+ ALRL PVP N++LPE YLGG
Sbjct: 607  ELLFINNNFIKVVKPNTFLDKTSLARVDMYANELVNLDMNALRLSPVPPNRSLPEIYLGG 666

Query: 660  NPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYL 719
            NPF CDC+M+WL  +NN    S  RQYP++MDLDNV+CKMT+SRG  H+P + A  S +L
Sbjct: 667  NPFHCDCTMEWLHPVNNM---SASRQYPRVMDLDNVMCKMTHSRGMAHMPLTRAKTSDFL 723

Query: 720  CPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA 779
            C Y+ HCFALCHCC+FDACDCEMTCP NCSC+HDQ WNTNVVDCS Q    +P RIPMDA
Sbjct: 724  CTYETHCFALCHCCDFDACDCEMTCPNNCSCYHDQTWNTNVVDCSGQNAIEIPHRIPMDA 783

Query: 780  THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
            T VYLDGN F+ + NHVFIGRKNM  L+VNNS IE I N TFNGL +LQ LHLE+N I  
Sbjct: 784  TEVYLDGNDFRELQNHVFIGRKNMRVLFVNNSGIETIQNSTFNGLHTLQTLHLEDNKIYA 843

Query: 840  FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
              GYEF++L  L ELYLQ N I  I N T   L SL++L+LDGN+L  F  + L++NS L
Sbjct: 844  LEGYEFEHLSNLKELYLQNNVISSIGNKTLEPLKSLEILRLDGNKLVVFPVWQLSSNSHL 903

Query: 900  RKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCT 959
             ++ L NN +SC C  LQE   W+ DN+ KV D   I C   E++P  R+++D NST C+
Sbjct: 904  TEISLANNRWSCRCKFLQEFTAWVADNAPKVVDSASIQCYNGEATPQ-RRDLDFNSTACS 962

Query: 960  EYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNF 1019
            ++YA SSVI S++VSDY   +++T  + ++ L+ ++  FVF+DP RVWLY++YGIRL +F
Sbjct: 963  DFYAGSSVIDSMLVSDYWKMVVVTLCIVILLLLGVVLWFVFRDPVRVWLYSRYGIRLCSF 1022

Query: 1020 KATSSKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPY 1071
            +A ++K + EDR+KL        PKDEE+V+Q++ AELE    ++QLCLHYRDLP H+ Y
Sbjct: 1023 RAAAAKQY-EDRDKLYDAFVCYSPKDEEWVVQALAAELES---NFQLCLHYRDLP-HAAY 1077

Query: 1072 LQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQT 1131
            LQ    +P V+EAAEASRRV+++LT+NFLQTE                            
Sbjct: 1078 LQH--AAPAVLEAAEASRRVLIILTRNFLQTE---------------------------- 1107

Query: 1132 EWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWGEKRFWERL 1191
             WSR + R A+HEAL  +  KLV++EE  +PEAE D EL+PYLK+  ++RWGEKRFWE+L
Sbjct: 1108 -WSRFELRQALHEALKGRVFKLVILEEGPLPEAELDPELRPYLKTGNRVRWGEKRFWEKL 1166

Query: 1192 RYAMPTCD-NSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHP------LF 1244
            RYAMP+ +   K + NYRRNINNYTIDS   R      H+H Y  +  +  P      +F
Sbjct: 1167 RYAMPSGEPRGKINANYRRNINNYTIDS---RVVANGTHSHTYPEKIKTQGPPSPGMQMF 1223

Query: 1245 KASTV-ISKNHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQEY 1303
                      H  +D  YSSATTATPSP+P R         +P+SDHIYSSID+    +Y
Sbjct: 1224 PPPAYSAGAPHEPDDANYSSATTATPSPRPMR----RAQEPRPISDHIYSSIDS----DY 1275

Query: 1304 ASRTDRNSTRRMNGKVP-VHQQTWSPAGVTMMDSNGVQAYLV 1344
            ++     S RR     P V  QT   AGV    +NG QAYLV
Sbjct: 1276 STLERGGSGRRGPPWRPHVMMQT---AGV----NNGGQAYLV 1310

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719612|ref|XP_001946943.2| PREDICTED: protein toll-like [Acyrthosiphon pisum]

 Score = 1389 bits (3596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1381 (51%), Positives = 936/1381 (67%), Gaps = 116/1381 (8%)

Query: 6    ENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTK 65
            E C+W   N    + SV C +  L      N S V  +   +L +DC   + L S++  +
Sbjct: 30   EPCTWSSYNNDTAKTSVQCRVRALAMDS-PNFSSVQPEGTVRLTVDCTDKLFLQSTLAPR 88

Query: 66   SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
             F++++ LEEL +  CKL+++P D F GL  LK+LT++T NL+W  +K ++L  GSLD L
Sbjct: 89   MFRSLHQLEELVLIRCKLLDIPADAFDGLGGLKKLTVHTSNLEWGATKTMELAQGSLDRL 148

Query: 126  RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
             ELQ L++S SN+ ++  D FC+L NIQ LN+S N I D+ TLGF          SG   
Sbjct: 149  TELQSLDLSESNVHTVPADAFCALKNIQQLNVSHNGIEDLTTLGF----------SGP-- 196

Query: 186  ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
            +C GG DL++L+LS N L+++   + I+  +RLQ L L++N I++IA ++   L+SL++ 
Sbjct: 197  DCPGGTDLKVLNLSWNNLQSVPARTAISAMKRLQTLGLQHNSITEIAADSLSTLASLKVF 256

Query: 246  NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
            N S N L +LPE LF+  R++ E+Y Q N L EL RGLFH+LEQ+++++LS+N +  N I
Sbjct: 257  NASYNKLEALPETLFAKNRELREVYLQNNGLYELPRGLFHRLEQMVIINLSNNKI--NQI 314

Query: 306  DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
            DE  F+GL+RL++L+LS N LTRI +  FKDLVFLQ LDL NNSI  IE+NAFL LYNLH
Sbjct: 315  DEGPFVGLLRLVVLDLSRNGLTRIKSNVFKDLVFLQILDLSNNSISSIEENAFLPLYNLH 374

Query: 366  TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
            T+ L+ENR+H I + LFNGLYVLSKLT++NNLL+ ID +AFKNCSALKELDLSSNAI ++
Sbjct: 375  TLNLAENRLHTIGSRLFNGLYVLSKLTINNNLLITIDDQAFKNCSALKELDLSSNAIQQV 434

Query: 426  PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
            P+AL+EL FLKTLDLGENQIS   N SFKN++ LT LRLVDN IGNL+ GM   LP+L+V
Sbjct: 435  PAALNELSFLKTLDLGENQISVFHNNSFKNMELLTGLRLVDNFIGNLTQGMFSNLPNLQV 494

Query: 486  LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDY 545
            LNLSKNKI+ IE GTF +N ++ AIRLD+N+LTD+NGVF  L+ L W+NLS+N+L+WFDY
Sbjct: 495  LNLSKNKIYTIERGTFTQNSQIQAIRLDANYLTDVNGVFESLSSLQWINLSKNNLIWFDY 554

Query: 546  AMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
            AMVP NLKWLD+H NY+  L +YY +KD L+I  +DASHN I EISE SIPNSVEVLF+N
Sbjct: 555  AMVPANLKWLDLHDNYVQELGDYYNLKDRLNINTIDASHNHITEISERSIPNSVEVLFLN 614

Query: 606  NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
            NN + +++P+TF  K NL RVD+YAN++T+LD+ ALRL  VP N++LPEFY+GGNPF+CD
Sbjct: 615  NNFLSNIRPNTFLKKRNLVRVDLYANELTRLDVNALRLGVVPINRSLPEFYIGGNPFECD 674

Query: 666  CSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIH 725
            CSMDWLP +NN T     RQ PK+MDLDNVVCK T SRGS  +P   A PSQ+LC Y+ H
Sbjct: 675  CSMDWLPAVNNMTQ---LRQNPKVMDLDNVVCKTTDSRGSEVVPILSAGPSQFLCKYETH 731

Query: 726  CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
            CF +C CCE+DACDCEMTCP NC+C+HDQ W+TN+VDCS Q  + VPP++PMDATHVYLD
Sbjct: 732  CFTVCKCCEYDACDCEMTCPSNCTCYHDQTWHTNIVDCSYQLNNQVPPKLPMDATHVYLD 791

Query: 786  GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
            GN F  +  H+FIGRKNM+ LY+NNS+IE + N TFN LSSLQVLHLE+N++T   GYEF
Sbjct: 792  GNNFNQLQGHIFIGRKNMVHLYLNNSKIESLQNHTFNRLSSLQVLHLEDNMLTELKGYEF 851

Query: 846  DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
            + L +L +L+L  NR+ Y+ N TF  L +L+VL+L GN L +F  + L+ N  L ++ +G
Sbjct: 852  EQLYQLRQLHLHNNRLSYVNNMTFAPLRNLEVLKLHGNLLSNFNVWQLSVNPYLVQLSVG 911

Query: 906  NNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATS 965
             NP+SC C  LQ  + W+ +N  K+ D  D++CV DES P  R+EID N TTC+++Y   
Sbjct: 912  KNPWSCRCKFLQPFRNWVYENGPKISDMTDVTCVPDESDPGQRREIDFNETTCSDFYTGG 971

Query: 966  SVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSK 1025
              + ++M S Y+P +    ++     ++ + +F  +D  +VWLYTKYGIR+F+ K + +K
Sbjct: 972  WALRNMMTSSYVPLLTFLLVV----FVVALVLFAVRDNIKVWLYTKYGIRVFSCKNSGNK 1027

Query: 1026 HFGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTT 1077
            HF EDREKL        PKDEEFVLQS+VAELEHGNPSYQLCLHYRDLP  S Y     +
Sbjct: 1028 HFYEDREKLYDGYVLYSPKDEEFVLQSVVAELEHGNPSYQLCLHYRDLPITSMY--HAGS 1085

Query: 1078 SPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSD 1137
            SPVVIEAAEASRRVI+VL++NF+QTEW                             SR +
Sbjct: 1086 SPVVIEAAEASRRVIVVLSRNFIQTEW-----------------------------SRYE 1116

Query: 1138 FRSAIHEALTTKTHKLVLVEEN-IVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMP 1196
            FRSA+HEAL  K +KLVL+EEN I  EA++D E++PYLK+  K+RWGEKRFWERLRY MP
Sbjct: 1117 FRSALHEALKGKVYKLVLIEENSIAAEADADPEIRPYLKTASKVRWGEKRFWERLRYLMP 1176

Query: 1197 T------CDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISS---------- 1240
            +        +  K CNYR NINNYTID+ T    + AH   P  S    +          
Sbjct: 1177 SNNHHNNNHHHHKVCNYRNNINNYTIDTRTP--VVPAHRRQPPPSPQDKAPHHRPHGHHH 1234

Query: 1241 -------HPLFKASTVISKNHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVS-DHIY 1292
                          ++    H  ED  YS+ATTATPSPK           D+P S +HIY
Sbjct: 1235 HHHQHHQQQQHSPGSLPRPQHRHEDSNYSTATTATPSPK-----LGGGCEDRPASTEHIY 1289

Query: 1293 SSIDTPEYQEYASRT---------DRNSTRRMNGKVPVHQQTWSPAGVTMMDSNGVQAYL 1343
            S+IDTP    + S +         +R ++RR + K   HQ             N VQAYL
Sbjct: 1290 SAIDTPPPSVHQSPSRMMPPTHQFERTNSRR-SAKHHQHQ-------------NAVQAYL 1335

Query: 1344 V 1344
            V
Sbjct: 1336 V 1336

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|182511220|ref|NP_001116821.1| 18 wheeler precursor [Bombyx mori] gi|18916402|dbj|BAB85498.1| 18 wheeler [Bombyx mori]

 Score = 1287 bits (3330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/1343 (51%), Positives = 909/1343 (67%), Gaps = 102/1343 (7%)

Query: 21   SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN 80
            S  C +  L +  G+ ++ V +D  ++L+I+C+  +  +SS+    F+ +  L +L ISN
Sbjct: 36   SAVCKIRTL-ESEGTAIASVSSD-TSRLSIECNHLLFFESSLKAHYFKPVPGLVDLSISN 93

Query: 81   CKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKS 140
            CKL+ +P + F GLR LK+L + ++N +W  +K L+L   + +GL ELQ L+++ +NIK 
Sbjct: 94   CKLLSVPDNTFHGLRKLKKLQLRSKNFEWSPTKNLELSLNAFNGLSELQSLDLAQNNIKF 153

Query: 141  ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200
            I   VFC L N+ TLNL+ N I+ +  +GF                   G  L+ LDLSH
Sbjct: 154  IPSGVFCVLENLNTLNLTYNRIKTVGQIGFGQ---------------GCGSSLQSLDLSH 198

Query: 201  NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF 260
            N ++T+ D S + K R LQ+L+L++N I+ I+  AF  L S+R+LNIS N L +LPEGLF
Sbjct: 199  NMIKTISDGSELLKLRSLQHLYLQHNNITDISNEAFDGLISMRVLNISHNRLHTLPEGLF 258

Query: 261  SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320
             + R++ EIY   NS+ EL+RG+FH+LEQL+VLD+SSN L+SNHID+ TF+GLIRLI+LN
Sbjct: 259  VNARELREIYLNDNSIYELARGIFHRLEQLIVLDISSNQLTSNHIDDGTFLGLIRLIVLN 318

Query: 321  LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAH 380
            LSNN LTR+D KTFKDL  LQ L+L+NNSIGYIEDNAFL LYNLHT+ L+ENR+H I  +
Sbjct: 319  LSNNALTRVDGKTFKDLFVLQILNLKNNSIGYIEDNAFLPLYNLHTLNLAENRLHTIDEN 378

Query: 381  LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDL 440
            LFNGL+VLSKLTL+NNLLVNID KAFKNCS LKELDLSSN ++E+P AL ELPFLKTLDL
Sbjct: 379  LFNGLFVLSKLTLNNNLLVNIDRKAFKNCSDLKELDLSSNQLLEVPEALWELPFLKTLDL 438

Query: 441  GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
            GENQ+S   NGSFKNL QLT LRL+DN IGNLS GM ++LPSL+VLN++KNKI  IE  T
Sbjct: 439  GENQLSNFRNGSFKNLNQLTGLRLIDNQIGNLSVGMFWDLPSLQVLNIAKNKILSIERET 498

Query: 501  FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
            F +N +L AIRLD NFL+DINGVF+ LA LLWLNLSENHLVWFDYA VP NLKWLDIHGN
Sbjct: 499  FIRNTQLEAIRLDGNFLSDINGVFSTLASLLWLNLSENHLVWFDYAFVPSNLKWLDIHGN 558

Query: 561  YISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK 620
            +I  L NYY++++ + IK LD SHNRI EIS ++IPNSVE+LFINNN + ++  +TFFDK
Sbjct: 559  FIEHLGNYYKLQEEIRIKTLDVSHNRISEISPMAIPNSVELLFINNNFLNAIHVNTFFDK 618

Query: 621  SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSP 680
             NL RVD+YAN+I  L+L +LRL  VP NKTLPEFY+GGNPF CDC+M+WLPIINN T+ 
Sbjct: 619  KNLTRVDMYANEINHLELNSLRLSTVPGNKTLPEFYIGGNPFQCDCTMEWLPIINNMTA- 677

Query: 681  SMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDC 740
               RQYP++MDL+NV+CKMT +R  TH+P +    + +LC Y+ HCFA+CHCC++DACDC
Sbjct: 678  --MRQYPRVMDLENVLCKMTNTRSGTHVPLTNLKTTDFLCKYETHCFAICHCCDYDACDC 735

Query: 741  EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGR 800
            EMTCP NC+C+HD  WNTNVVDCS Q    +P +IPMDAT V+LDGN  + + NHVFIGR
Sbjct: 736  EMTCPHNCTCYHDPLWNTNVVDCSGQSSMEIPQKIPMDATEVFLDGNNIRELQNHVFIGR 795

Query: 801  KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
            + M +LYVNNS ++ I N+TF+GL+SLQ+LHL NN +    GYEF  L  L EL+LQ N 
Sbjct: 796  QKMRTLYVNNSNVDSIQNRTFSGLNSLQILHLGNNKLKELKGYEFQQLNNLKELFLQNNL 855

Query: 861  IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
            I +IAN +F +L SL++L+LDGNRL  F  +  + N  L+ + LGNN +SC C  LQEL 
Sbjct: 856  ISHIANISFLSLKSLELLRLDGNRLVDFGVWSFSNNLNLKALSLGNNLWSCKCRYLQELT 915

Query: 921  TWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFM 980
             ++ +N+ K+ D  D+ C   ++ PP +KE++LN T C++YYA +SVI +++VS+Y+P M
Sbjct: 916  AFLAENAQKIIDITDVWCWNGDAKPPQKKELNLNGTACSDYYADNSVIGNMLVSNYVPMM 975

Query: 981  IITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKL------ 1034
            + T   F++ L+ ++ +F+F+D  RVWLYT  GIR+F+   T      E+ +KL      
Sbjct: 976  VSTLTGFMLILLALVLLFLFRDSLRVWLYTNCGIRVFSLPGTF-----EENQKLYDAYVC 1030

Query: 1035 --PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVI 1092
              PKDEE V+QS+V ELE+GNPSY LCLHYRD+PHH     Q   +P  +E AEAS+R+I
Sbjct: 1031 YSPKDEESVVQSLVNELENGNPSYHLCLHYRDIPHHGAQYMQ--CAPPDVETAEASKRII 1088

Query: 1093 LVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHK 1152
            +VLT+NF+QTEW                             SR +FR  +HEAL    +K
Sbjct: 1089 IVLTRNFMQTEW-----------------------------SRYEFRQGLHEALKGCIYK 1119

Query: 1153 LVLVEE-NIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMP---TCDNSKKSCNYR 1208
            LVL+EE ++V +A  D +L+PYLK+  ++RWG+K FWERLRY MP      +  +S +YR
Sbjct: 1120 LVLIEECSVVADAMCDPDLRPYLKTGSRLRWGQKGFWERLRYIMPDSTHSSHKSRSHSYR 1179

Query: 1209 RNINNYTIDSGT---GRRSIEAHHTHP---YSSQHISSHPLFKASTVISKNHNQEDLAYS 1262
            R+IN YT+DS     G R++      P    ++Q  S+ P                  Y 
Sbjct: 1180 RSINTYTLDSSVPNGGNRTMAFPDKSPVLGVANQGASAPP-----------------EYV 1222

Query: 1263 SATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQ-EYASRTDRNSTRRMNGKVPV 1321
            +    +PS              +P+SDHIYSSID+     E+     R    R       
Sbjct: 1223 TEVRQSPSVVRQTQGVAYGPDGRPISDHIYSSIDSDYSSLEHGMAPGRRRDIRQ------ 1276

Query: 1322 HQQTWSPAGVTMMDSNGVQAYLV 1344
                W P    +   N VQAYLV
Sbjct: 1277 ----WPPPPPLVDTGNAVQAYLV 1295

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617686|gb|EHJ70927.1| 18 wheeler [Danaus plexippus]

 Score = 1266 bits (3275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1344 (51%), Positives = 903/1344 (67%), Gaps = 102/1344 (7%)

Query: 21   SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN 80
            S+ C +  L    GS++S V ++    LNI+C+  +L +S++    F  + SL +L I+N
Sbjct: 34   SIICRIRTL-DSDGSSISTVNSETYA-LNIECNHLLLFESTLRAHYFSTVGSLTDLTINN 91

Query: 81   CKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKS 140
            CKL+ +P + F  L  L+RL I ++N +W   K L+L   S +GL E+Q L+++ +NIK 
Sbjct: 92   CKLLSVPDNTFQDLNKLRRLKIRSKNSEWSPIKNLELTLNSFNGLSEMQSLDLAQNNIKF 151

Query: 141  ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200
            IS  +FCSL N+ TLN++RN IR +  +GF                C  G  L  LDLSH
Sbjct: 152  ISSGIFCSLENLNTLNVTRNRIRTVGQIGFGQ-------------GCGSG--LHTLDLSH 196

Query: 201  NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF 260
            N+++TL + S + K R LQ ++L+ N IS I+  AF  L SLR+LNIS N L +LPEGLF
Sbjct: 197  NEIKTLSEESELVKLRSLQYIYLQYNNISDISSEAFKGLGSLRVLNISHNRLHTLPEGLF 256

Query: 261  SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN 320
            +  R++ EIY   NS+ EL+RG+FH+LEQL+VLDLSSN L+SNHID+ TF+GLIRLI+LN
Sbjct: 257  AYARELREIYLNDNSIFELARGIFHRLEQLIVLDLSSNQLTSNHIDDGTFLGLIRLIVLN 316

Query: 321  LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAH 380
            LSNN LTRID KTFKDL  LQ L+L+NNSIGYIE+NAFL LYNLHT+ L+ENR+H +  +
Sbjct: 317  LSNNALTRIDGKTFKDLFVLQILNLKNNSIGYIEENAFLPLYNLHTLNLAENRLHTVDEN 376

Query: 381  LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDL 440
            LFNGL+VLSKLTL+NNLLVNID KAFKNCS LKELDLSSN ++EIP AL ELPFLKTLDL
Sbjct: 377  LFNGLFVLSKLTLNNNLLVNIDRKAFKNCSDLKELDLSSNQLIEIPDALWELPFLKTLDL 436

Query: 441  GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
            GENQIS  +NGSFKNL QLT LRL+DN IGNLS+GM ++LPSL+VLN++KNKI  IE GT
Sbjct: 437  GENQISDFKNGSFKNLNQLTGLRLIDNQIGNLSAGMFWDLPSLQVLNIAKNKIQSIERGT 496

Query: 501  FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
            F +N +L AIRLD NFL+DINGVF+ LA LLWLNLSENHLVWFDYA VP NLKWLD+HGN
Sbjct: 497  FSRNSQLEAIRLDGNFLSDINGVFSTLASLLWLNLSENHLVWFDYAFVPSNLKWLDVHGN 556

Query: 561  YISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK 620
            +I  L NYY+++D + IK LD SHNRI+EIS +SIPNSVE+LFINNN + ++  +TFFDK
Sbjct: 557  FIEHLGNYYKLQDEIRIKTLDVSHNRIVEISPMSIPNSVELLFINNNFLNNIHVNTFFDK 616

Query: 621  SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSP 680
             NL RVD+YAN+I  L+L +LRL  VP NK+LPEFY+GGNPF CDC+M+WLPI+NN T+ 
Sbjct: 617  KNLTRVDMYANEIVHLELNSLRLANVPMNKSLPEFYIGGNPFKCDCTMEWLPIVNNMTA- 675

Query: 681  SMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDC 740
               RQYP++MD++NV+CKMT +R  T +P +    S +LC Y+ HCFA+CHCC++DACDC
Sbjct: 676  --MRQYPRVMDIENVLCKMTNTRSGTQVPLTNLKKSDFLCAYETHCFAICHCCDYDACDC 733

Query: 741  EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGR 800
            EMTCP+NC+C+HD  WNTNVVDCS Q    +P +IPMDAT V+LDGN  + + NHVFIGR
Sbjct: 734  EMTCPQNCTCYHDPLWNTNVVDCSGQSSMEIPHKIPMDATEVFLDGNNIRELQNHVFIGR 793

Query: 801  KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
            + M SLYVNNS ++ I N+TF GL++L++LHL NN +    GYEF  L  L EL+LQ N 
Sbjct: 794  QKMRSLYVNNSNVDSIQNRTFAGLNALEILHLGNNKLRELKGYEFHQLSNLKELFLQNNL 853

Query: 861  IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
            I +IAN +F +L SL+ L+LDGNRL  F  +    NS L+ + LGNN +SC C  LQEL 
Sbjct: 854  ISHIANISFLSLKSLETLRLDGNRLVDFGVWSFADNSNLKALSLGNNLWSCKCRYLQELT 913

Query: 921  TWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFM 980
             ++ +N+ K+ D  D+ C   ++ PP +KE++LN T C++YYA +SVI +++VS+Y+P M
Sbjct: 914  AYLAENAQKIIDITDVWCWNGDAKPPQKKELNLNGTACSDYYADNSVIGNMLVSNYVPMM 973

Query: 981  IITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKL------ 1034
            + T   F++ L+ ++ +F+F+D  RVWLYT  GIR+F+          E+ EKL      
Sbjct: 974  VSTLTGFMLILLALVVLFLFRDSLRVWLYTNCGIRVFSLSNGY-----EENEKLYDAYVC 1028

Query: 1035 --PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVI 1092
              PKDEE VLQ    ELE+GN SY LCLHYRD+PHH     Q+  +P V++ AEAS+R+I
Sbjct: 1029 YSPKDEELVLQIFANELENGNSSYNLCLHYRDIPHHGAQYMQY--APPVLDFAEASKRII 1086

Query: 1093 LVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHK 1152
            LVLT+NF+QTEW                             SR D+R   HE L    +K
Sbjct: 1087 LVLTRNFMQTEW-----------------------------SRFDYRKEFHEVLKGYVYK 1117

Query: 1153 LVLVEE-NIVPEAESDIELKPYLKSCMKIRWGEKRFWERLRYAMPTCDNS----KKSCNY 1207
            LVL+E+ ++V EA  D EL+PYLK+  ++R+G+K F ERL++ +P    S    + S N 
Sbjct: 1118 LVLIEDYSVVQEAMCDEELRPYLKTGSRLRYGQKNFMERLKFMLPDSTQSHHKKRNSSNC 1177

Query: 1208 RRNINNYTIDSGT---GRRSIEAHHTHPY---SSQHISSHPLFKASTVISKNHNQEDLAY 1261
            R+NIN YT+DS     G R++      P    S Q  S+ P                  Y
Sbjct: 1178 RKNINTYTLDSSVPNGGNRTLSYPDKSPVLGNSGQGASAPP-----------------EY 1220

Query: 1262 SSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQ-EYASRTDRNSTRRMNGKVP 1320
            S+    +PS              +P+SDHIYSSID+     E      R    R      
Sbjct: 1221 STEVRQSPSTIRQMQGVSYGPDGRPISDHIYSSIDSDYSSLEQGMAPGRRRDMR------ 1274

Query: 1321 VHQQTWSPAGVTMMDSNGVQAYLV 1344
               Q   P  +    S GVQAYLV
Sbjct: 1275 ---QWPPPPPIVDTGSGGVQAYLV 1295

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413730|ref|XP_003490091.1| PREDICTED: protein toll-like [Bombus impatiens]

 Score = 1252 bits (3240), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/1365 (48%), Positives = 873/1365 (63%), Gaps = 105/1365 (7%)

Query: 7    NCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKS 66
            +C W  E  +  R S  C L  L  G  + L     D   KL I C      +SS    S
Sbjct: 30   SCKWLSEGGNDTR-SADCTLRVLDPGAITGL-VASLDGALKLRIRCSDVHHFESSFNAHS 87

Query: 67   FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            +Q + SL EL +  CK++ +P   F  L  LK+LT+ T N  W  S+ L+L P S  GLR
Sbjct: 88   WQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNAVWGASRFLELAPDSFHGLR 147

Query: 127  ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
            EL  L I  SN++++   + CSL N+QTLNL+ N + D+  +G   R      +S E +E
Sbjct: 148  ELHTLEIVESNVQALPAKLLCSLDNLQTLNLTENRLHDVSDIGLNRRGG----DSVEGVE 203

Query: 187  CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
                 D+RILDLS N++  L + S +   R+LQ LHL+ N I +IA +A   L+ LR  N
Sbjct: 204  XXXRADIRILDLSRNEITRLQENSPLLGLRQLQELHLQRNSIVEIASDALQGLTVLRTFN 263

Query: 247  ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
             S N L SLPEGLF+S R++ EI+   N L +L RG+F +LEQLLVL+L+ N L S+ +D
Sbjct: 264  ASYNSLDSLPEGLFASTRELREIHLAYNGLRDLPRGIFTRLEQLLVLNLAGNRLGSDRVD 323

Query: 307  ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
            ETTF+GLIRLI+L+LS N LT IDA+ FKDL FLQ LDLRNN+I  IE NAFL LYNLHT
Sbjct: 324  ETTFLGLIRLIVLDLSYNMLTHIDARMFKDLFFLQILDLRNNTIDRIESNAFLPLYNLHT 383

Query: 367  IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
            + LS+N++H + A LFNGL+VL++LTLS N + +ID  AF+NCS LKELDLS N +  +P
Sbjct: 384  LELSDNKLHTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 443

Query: 427  SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
             AL +L  LKTLDLGEN+IS   NGSF+NL QLT LRL+ N+IGNLS GML++LP+L++L
Sbjct: 444  DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQIL 503

Query: 487  NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
            NL++NK+  +E   FE+N RL AIRLD NFL+DINGVFT +A LL LNLSENH+ WFDYA
Sbjct: 504  NLARNKVQHVERYAFERNVRLEAIRLDGNFLSDINGVFTNIASLLLLNLSENHIEWFDYA 563

Query: 547  MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
             +PGNLKWLDIHGN+I SL NYY+I+D   +K LDASHNR+ E+S LS+P+SVE+LFINN
Sbjct: 564  FIPGNLKWLDIHGNFIESLGNYYKIRDS-KVKTLDASHNRVTELSPLSVPDSVELLFINN 622

Query: 607  NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
            N I  V+P+TF DK NL RVD+YAN I  ++LT+L L  VP+++ LPEFY+GGNPF+C+C
Sbjct: 623  NYISLVRPNTFRDKENLTRVDMYANMIETMELTSLLLTKVPEDRALPEFYIGGNPFNCNC 682

Query: 667  SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC 726
            SMDWLP INN TS    R+YP+IMDLDNV+C+ +  RG   + AS A   Q+LC Y+ HC
Sbjct: 683  SMDWLPAINNQTS---TREYPRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHC 739

Query: 727  FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDG 786
            FALCHCC+FDACDCEMTCP  C C++D+ WNTN VDCS   +  +P RIPMDAT VYLDG
Sbjct: 740  FALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLTVEEIPRRIPMDATEVYLDG 799

Query: 787  NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
            N  + + NHVFIGRKNM  LYVN S IE I N+TFNGL++LQ+LHLE+N I    G+EF+
Sbjct: 800  NVLRELQNHVFIGRKNMRVLYVNASGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 859

Query: 847  NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN 906
             L  L ELYLQ N I +I N TF  L SL++L+L GNRL +F  + +  N+ L ++ LG+
Sbjct: 860  RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGS 919

Query: 907  NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID-ESSPPIRKEIDLNSTTCTEYYATS 965
            NP+SC C  LQEL +W+ DN++KV D  D+ C    ++ P  R+ +++N T C++Y++  
Sbjct: 920  NPWSCRCKFLQELSSWVSDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYFSQG 979

Query: 966  SVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSK 1025
             VI SIMVSDYLP M  TF   LV L+++   F+F++P   W Y+KYG+R       S K
Sbjct: 980  GVIESIMVSDYLPLMAATFSAVLVILVIVALAFIFREPVGAWAYSKYGLRFLRAGKPSGK 1039

Query: 1026 HFGE----------------DREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLH 1061
              G                 DRE+L        P DE+FV+ S+  ELEHG   ++LCLH
Sbjct: 1040 SSGAATMXAAAPMAAACCDADRERLYDCYVCYSPNDEDFVVHSLAMELEHGTAGFRLCLH 1099

Query: 1062 YRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVI 1121
            +RDLP     L+    +P+++EA +AS                      +EA +ASRRV+
Sbjct: 1100 HRDLP---CVLRASAPAPIILEAVDASXXXXXXXXXX------------LEAVDASRRVL 1144

Query: 1122 LVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN-IVPEAESDIELKPYLKSCMKI 1180
            +VLT+NF+QTEWSR +FR+A+HEAL  +  +L++V+     PE E D EL+PYL++   I
Sbjct: 1145 IVLTRNFVQTEWSRFEFRAALHEALRGRAAQLIVVQAGHACPEVERDPELRPYLRTAAAI 1204

Query: 1181 -RWGEKRFWERLRYAMPTCDN-----------SKKS-CNYRRNINNYTIDS-GTGRRSIE 1226
              WGEKRFWERLRYA+P+  N           SK S   Y+RNIN YT+D  G+ + S+ 
Sbjct: 1205 LTWGEKRFWERLRYAIPSSVNTMMNPADISVESKSSPLVYKRNINTYTLDCIGSEKTSVS 1264

Query: 1227 AHHTHPYSSQHISSHPLFKASTVISKNHNQE-DLAYSSATTATP-------SPKPHRL-- 1276
                    +Q      LF           Q    AYS  T + P       SP+P RL  
Sbjct: 1265 T-----LRAQERGQRSLFXXXXXXXALMLQHAPPAYSCGTVSMPQQQLPPSSPQP-RLTV 1318

Query: 1277 -HCYTNA-----------------------SDKPVSDHIYSSIDT 1297
             H Y +A                         +P+S+HIYSSID+
Sbjct: 1319 NHAYRDAVTVPGSNLIGTNNTTISSGSSEDHRRPLSEHIYSSIDS 1363

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170062865|ref|XP_001866855.1| toll [Culex quinquefasciatus] gi|167880620|gb|EDS44003.1| toll [Culex quinquefasciatus]

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1359 (47%), Positives = 883/1359 (64%), Gaps = 124/1359 (9%)

Query: 8    CSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTK-S 66
            C+W+ E     + SVTC L  + + G   L     +  ++L++ C   +L +S +  + S
Sbjct: 97   CNWEYE-----KASVTCRLRTIERTG---LDLQGAEGASRLDVQCSELILFESQLPVQNS 148

Query: 67   FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            F  + SL ELKI  CKL++LP   F GL  LK+L++NTRN +W   K L+L   S+ GL+
Sbjct: 149  FVRLASLSELKIEACKLLQLPEGAFDGLLGLKKLSVNTRNYEWGAGKVLELQSASMQGLK 208

Query: 127  ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
            ELQ L++S +NI+ + +   C L N++ LNL+ N IR  ++LG A +             
Sbjct: 209  ELQSLDLSDNNIRGLPEGFLCPLTNLKVLNLTNNRIRATESLGLAGK------------T 256

Query: 187  CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
            CSGG +++ L+LS+N++  + +  G+++ RRLQ+L+LE N I+++   A   LSSLR LN
Sbjct: 257  CSGGSEVQTLNLSYNEIMKIPENWGVSRLRRLQHLNLEYNNITELHGEALAGLSSLRTLN 316

Query: 247  ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
            +S NHL +LP GL +  R++ EI+ Q N L EL RGLFH+LEQLLVLDLS N LSS+H+D
Sbjct: 317  LSYNHLETLPAGLLAGSRELREIHLQGNQLYELPRGLFHRLEQLLVLDLSRNQLSSHHVD 376

Query: 307  ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
              TF GLIRL++LNL++N LTRID+KTFK+L FLQ LDLRNNSIGYIEDNAFL LYNLHT
Sbjct: 377  NGTFSGLIRLVVLNLAHNALTRIDSKTFKELYFLQILDLRNNSIGYIEDNAFLPLYNLHT 436

Query: 367  IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
            + L+ENR+H +   LFNGLYVLSKLTL+NNL+  ++   FKNCS LKELDLSSN + E+P
Sbjct: 437  LNLAENRLHTLDDRLFNGLYVLSKLTLNNNLISIVERNVFKNCSDLKELDLSSNQLSEVP 496

Query: 427  SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
             A+ +L  L+ LDLGENQI+ IENG+F NL QLT LR++DN I N++ GM  +LP L VL
Sbjct: 497  HAIRDLSVLRALDLGENQINYIENGTFSNLNQLTGLRMIDNQIENITIGMFTDLPRLSVL 556

Query: 487  NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
            NL+KN++  IE G+F+KN  + AIRLD NFLTDING+F  L+ LLWLNL+ENHLVWFDYA
Sbjct: 557  NLAKNRVQNIERGSFDKNLDIEAIRLDGNFLTDINGIFATLSSLLWLNLAENHLVWFDYA 616

Query: 547  MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
             +P NLKWLDIHGNYI SL NYY++++ + +K LDASHNR+ +I  +++PNSVE+LFIN+
Sbjct: 617  FIPSNLKWLDIHGNYIESLGNYYKLQEEIKVKTLDASHNRLTDIGPMNVPNSVELLFIND 676

Query: 607  NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
            N I ++  +TF DK NLARVD+YAN + KL L  LR+ P P +K LPEFYLGGNPF+CDC
Sbjct: 677  NHISTIHANTFIDKINLARVDLYANSLKKLQLHQLRVAPQPADKPLPEFYLGGNPFECDC 736

Query: 667  SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC 726
            SM+W+  +NN T+    RQ+PKIMDL NV C M ++RGS   P     P  +LC Y+ HC
Sbjct: 737  SMEWMQRVNNLTA----RQHPKIMDLPNVECIMPHARGSPVRPIVSLKPKDFLCKYETHC 792

Query: 727  FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDG 786
            FALCHCC+FDACDCEMTCP NC+C+HDQ W TNVVDC  Q+ +   P +PMDAT VY+DG
Sbjct: 793  FALCHCCDFDACDCEMTCPTNCTCYHDQTWGTNVVDCGNQRAALAKP-VPMDATEVYMDG 851

Query: 787  NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
            N +  + NH FIGRKN+  L+ N S+I  I N+TF GL++LQVLHLE+N I   +GYEF+
Sbjct: 852  NDYPELQNHAFIGRKNLKVLFANASKIITIQNRTFAGLTALQVLHLEDNAIQKIHGYEFE 911

Query: 847  NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM--LRKVYL 904
            NL  L ELYLQ N I  IAN +F  L SLQVL++DGNRL +     L    +  L+ + L
Sbjct: 912  NLGLLKELYLQNNMISVIANNSFAPLYSLQVLRIDGNRLTTIPMAQLQATQLQSLQALSL 971

Query: 905  GNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNST-TCTEYYA 963
            G N +SC C  +QEL +++ DN+  ++D  DI CV D     I +++D N T +C++YYA
Sbjct: 972  GRNYWSCRCRFMQELTSFVADNAVIIQDMQDIYCVDDG----IHRDLDFNVTASCSDYYA 1027

Query: 964  TSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATS 1023
             SSV+   +   Y+ F++   L+    L+ ++ MF+F++P R WL+++YG+R+F  +   
Sbjct: 1028 GSSVLPDRLSETYI-FLLAAALIIACLLVFVLVMFIFREPLRFWLFSRYGVRVFGPRC-- 1084

Query: 1024 SKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQH 1075
                 ED EKL         KD E+V ++I AELE+G P  +LCL +RDL   + +LQ  
Sbjct: 1085 -----EDSEKLYDAIFIYSAKDAEYVARNIAAELENGRPPLRLCLQHRDLSEDASHLQ-- 1137

Query: 1076 TTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSR 1135
                 ++EA+ ASRR++++L++NFLQTE                             WSR
Sbjct: 1138 -----LLEASRASRRIVMLLSRNFLQTE-----------------------------WSR 1163

Query: 1136 SDFRSAIHEALTTKTHKLVLVEE-NIVPEAESDIELKPYLKSCM--KIRWGEKRFWERLR 1192
             + R A+H+AL  + HKLV++EE  ++ EAE+D+EL PYLK+    +I+  ++ FWE+LR
Sbjct: 1164 CELRRAVHDALRGRPHKLVVLEEVGVLLEAENDVELVPYLKTATVNRIKRSDRHFWEKLR 1223

Query: 1193 YAMPTCDNSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISSHPLFKASTVISK 1252
            YA+P          YR   NNYTID    R    +    P       + P +        
Sbjct: 1224 YALPV------EAPYRG--NNYTIDHHE-RVKQTSGANGPAGVMFRQAPPAYCPEI---- 1270

Query: 1253 NHNQEDLAYSSATTATPSPKPHRLHCYTNASDKPVSDHIYSSIDTPEYQEYASRTDRNST 1312
                ++  YSSATTATPSP+P R         +P S+HIYSSID+ +Y          ST
Sbjct: 1271 ----DEANYSSATTATPSPRPSR-RGMVELPQRPPSEHIYSSIDS-DY----------ST 1314

Query: 1313 RRMNGKVP-VHQ--QTWSPAGV----TMMDSNGVQAYLV 1344
                  VP VH+   TW P G     TM   + VQAYLV
Sbjct: 1315 LECENMVPGVHRPSSTWRPGGGGGQNTMPHGHHVQAYLV 1353

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485683|ref|XP_003425317.1| PREDICTED: LOW QUALITY PROTEIN: protein toll [Nasonia vitripennis]

 Score = 1237 bits (3201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1204 (51%), Positives = 835/1204 (69%), Gaps = 65/1204 (5%)

Query: 58   LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
             +S+++ +S+  +  L EL I  CKL+ +P   F  L +LKRLT+ T N++W  ++ L++
Sbjct: 39   FESTLSGESWNRLKGLHELSIEGCKLLRIPDAAFQPLADLKRLTVQTLNVEWGVTRSLEI 98

Query: 118  VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASA 177
               +  GLRELQVL +  SN+K++  +  C L+N+Q LNL+ N   ++  +GFA  R   
Sbjct: 99   ASDAFAGLRELQVLELIDSNLKALPANALCGLSNLQVLNLTGNQFSNVSDVGFADNRPGR 158

Query: 178  ESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
            +++S  + +C    D+R LDLS N+LR+L D S ++  R+LQ L L++N I  +  +A  
Sbjct: 159  DNSS--RADCHA--DIRALDLSRNELRSLPDESSLSSLRQLQELMLQHNFIDAVTSDALT 214

Query: 238  ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS 297
             L++LR+ N+S N+L SLP  LF+S RD+ EI+ Q N L EL RG F +LE LLVL+L+ 
Sbjct: 215  GLTNLRVFNVSYNNLNSLPNSLFASTRDLQEIHLQFNQLRELPRGTFTRLEHLLVLNLAG 274

Query: 298  NHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNA 357
            N L S+ ++ETTF+GLIRLI+L+LS N+LT I    FKDL FLQ LDLRNNSI +IE NA
Sbjct: 275  NRLGSDFVNETTFLGLIRLIVLDLSYNQLTHISELMFKDLFFLQILDLRNNSISHIESNA 334

Query: 358  FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDL 417
            F  LYNLHT+ LS+NR+H I   LFNGL+VL++LTLS NL+ +ID  AF+NCS LKELDL
Sbjct: 335  FRPLYNLHTLELSDNRLHAIGPQLFNGLFVLNRLTLSGNLVSSIDPVAFRNCSDLKELDL 394

Query: 418  SSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
            S N +  +P AL  L FLKTLDLGEN+IS+  NGSF NL QLT LRL+ N IGNL+ GML
Sbjct: 395  SGNELTSVPEALRNLNFLKTLDLGENRISEFHNGSFHNLHQLTGLRLIGNEIGNLTRGML 454

Query: 478  YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSE 537
            ++LP+L++LNL++NK+  +E  TFE+N +L AIRLD NFL+DINGVF  +A LL LNLSE
Sbjct: 455  WDLPNLQILNLARNKVQHVERDTFERNSKLEAIRLDGNFLSDINGVFASIASLLLLNLSE 514

Query: 538  NHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN 597
            NH+ WFDYA +P NLKWLDIHGN+I  L+NYY+I+D   ++ LDASHNRI E++ LS+P+
Sbjct: 515  NHIEWFDYAFIPSNLKWLDIHGNFIEKLDNYYKIRDQ-KVRTLDASHNRITELTPLSVPD 573

Query: 598  SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYL 657
            SVE+LFINNN I +V+P+TF  K NL RVD+YAN I  ++LT+LRL PVP+ K LPEFY+
Sbjct: 574  SVELLFINNNYITNVRPNTFTGKVNLTRVDMYANMIESMELTSLRLTPVPEGKLLPEFYI 633

Query: 658  GGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQ 717
            GGNPF+C+CSMDWLP+INN    S  RQ+P++MDLDN +C+++  RG+  +PAS A P Q
Sbjct: 634  GGNPFNCNCSMDWLPVINNM---SALRQHPRVMDLDNAMCRVSGPRGTAIVPASMAKPDQ 690

Query: 718  YLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPM 777
            +LC Y+ HCFALCHCC+FDACDCEMTCP +C C+HDQ WNTNVVDCS      +P RIPM
Sbjct: 691  FLCRYEAHCFALCHCCDFDACDCEMTCPSDCKCYHDQTWNTNVVDCSGLGTREIPRRIPM 750

Query: 778  DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
            DAT VYLDGN    + NHVFIGRKNM  LYVN S IE I N+TFNGL++LQVLHLE+N I
Sbjct: 751  DATEVYLDGNDLHELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQVLHLEDNRI 810

Query: 838  THFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNS 897
                G+EF++L  L ELYLQ N I YI N T   L SL+VL+L GNRL +F  + ++ N 
Sbjct: 811  RELKGFEFEHLAHLRELYLQNNLINYIGNLTLFPLRSLEVLRLHGNRLVTFPVWQVSLNG 870

Query: 898  MLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTT 957
             L ++ LG NP+SC C  +QEL +W+ DN++KV D  D+ C  +E+ P  R+ +++N T 
Sbjct: 871  RLNELSLGGNPWSCRCKFMQELTSWVSDNAHKVIDASDVWCYNNEARPAYRRRLNVNETA 930

Query: 958  CTEYYATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLF 1017
            C++Y+A   VI SIMVSDYLP +  T    L+ L+L +  F+F++P R W Y++YG+R +
Sbjct: 931  CSDYFAQGGVIESIMVSDYLPMVAATLSAILLLLVLAVLAFIFREPVRTWAYSRYGVRFW 990

Query: 1018 NFKATSSKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHS 1069
               A       ED+++L        PKDEEFVL ++  ELEHG    QLCLH+RDLP   
Sbjct: 991  AKAAAP-----EDKDRLYDGYVCYSPKDEEFVLHNLAVELEHGVAGLQLCLHHRDLP--- 1042

Query: 1070 PYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFL 1129
                    +PVV+EAAE                             AS+RV++VLT+NFL
Sbjct: 1043 ---CLRAAAPVVLEAAE-----------------------------ASKRVVIVLTRNFL 1070

Query: 1130 QTEWSRSDFRSAIHEALTTKTHKLVLVEENIV-PEAESDIELKPYLKSCMKIRWGEKRFW 1188
            QTEWSR +FR+A+HEAL  +  +L++V+   V PEAE+D+EL+PYL++ + +RW +KRFW
Sbjct: 1071 QTEWSRFEFRAALHEALRGRPGQLLIVQAGPVGPEAENDLELRPYLRTAVILRWDDKRFW 1130

Query: 1189 ERLRYAMPTCD--NSKKSCNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQHISS--HPLF 1244
            ERLRYA+P  D    K S  YRRN+N YT++     R  +A       S+HI++  HPLF
Sbjct: 1131 ERLRYALPAGDALRRKSSSLYRRNVNTYTLEG----RPEKAGGASLRVSEHIAAGHHPLF 1186

Query: 1245 KAST 1248
            K S 
Sbjct: 1187 KDSA 1190

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|61656216|ref|NP_001013379.1| 18-wheeler precursor [Apis mellifera] gi|60678633|gb|AAX33677.1| Toll-like receptor [Apis mellifera]

 Score = 1229 bits (3181), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1356 (49%), Positives = 871/1356 (64%), Gaps = 110/1356 (8%)

Query: 7    NCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKS 66
            +C W  E  +  R S  C L  L  G  + L     D   KL I C      +SS   +S
Sbjct: 30   SCKWLSEGGNDTR-SADCTLRVLDPGAITGL-VASLDGALKLRIRCSDVHHFESSFNAQS 87

Query: 67   FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            +Q + SL EL +  CK++ +P   F  L  LK+LT+ T N  W  S+ L+L P S  GLR
Sbjct: 88   WQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPDSFLGLR 147

Query: 127  ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
            EL  L I  SN++++  +  CSL N+QTLNL+ N +RDI+ +G   R +   S+  +  E
Sbjct: 148  ELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDE 207

Query: 187  CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
             S   D+RILDLS N++  L + S +   R+LQ LHL+ N I +IA +A   L+ LR  N
Sbjct: 208  SSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFN 267

Query: 247  ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
             S N L SLPEGLF+S RD+ EI+   N L +L +G+F +LEQLLVL+L+ N L S+ +D
Sbjct: 268  ASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVD 327

Query: 307  ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
            ETTF+GLIRLI+LNLS N LT IDA+ FKDL FLQ LDLRNNSI  IE NAFL LYNLHT
Sbjct: 328  ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHT 387

Query: 367  IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
            + LS+N++  + A LFNGL+VL++LTLS N + +ID  AF+NCS LKELDLS N +  +P
Sbjct: 388  LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 447

Query: 427  SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
             AL +L  LKTLDLGEN+IS   NGSF+NL QLT LRL+ N+IGNLS GML++LP+L++L
Sbjct: 448  DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQIL 507

Query: 487  NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
            NL++NK+  +E   FE+N RL AIRLD NFL+DINGVFT +A LL LNLSENH+ WFDYA
Sbjct: 508  NLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYA 567

Query: 547  MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
             +PGNLKWLDIHGN+I SL NYY+I+D   +K LDASHNRI E+S LS+P+SVE+LFINN
Sbjct: 568  FIPGNLKWLDIHGNFIESLGNYYKIRDS-KVKTLDASHNRITELSPLSVPDSVELLFINN 626

Query: 607  NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
            N I  V+P+TF DK NL RVD+YAN I  ++LT+L L  V +++ LPEFY+GGNPF+C+C
Sbjct: 627  NYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYIGGNPFNCNC 686

Query: 667  SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC 726
            SMDWLP INN TS    R+YP+IMDLDNV+C+ +  RG   + AS A   Q+LC Y+ HC
Sbjct: 687  SMDWLPGINNQTS---TREYPRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHC 743

Query: 727  FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDG 786
            FALCHCC+FDACDCEMTCP  C C++D+ WNTN VDCS   +  +P RIPMDAT VYLDG
Sbjct: 744  FALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLGVEEIPRRIPMDATEVYLDG 803

Query: 787  NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
            N  + + NHVFIGRKNM  LYVN S IE I N+TFNGL++LQ+LHLE+N I    G+EF+
Sbjct: 804  NVLRELQNHVFIGRKNMRVLYVNGSGIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 863

Query: 847  NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN 906
             L  L ELYLQ N I +I N TF  L SL++L+L GNRL +F  + +  N+ L ++ LG+
Sbjct: 864  RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGS 923

Query: 907  NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID-ESSPPIRKEIDLNSTTCTEYYATS 965
            NP+SC C  LQEL +W+ DN++KV D  D+ C    ++ P  R+ +++N T C++Y++  
Sbjct: 924  NPWSCRCKFLQELSSWVSDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYFSQG 983

Query: 966  SVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSK 1025
             VI SIMVSDYLP +  T    LV L++I+  FVF++    W Y+KYG+R    K   S 
Sbjct: 984  GVIESIMVSDYLPLVAATLSGVLVLLVIIVLAFVFRESVGAWAYSKYGLRFLRAKPGKSS 1043

Query: 1026 H-------------FGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRD 1064
                          F  DRE+L        P DE+FVL S+  ELEHG    +LCLH+RD
Sbjct: 1044 GAAAMASAAPMPACFDSDRERLYDCYVCYSPNDEDFVLHSLAVELEHGAAGLRLCLHHRD 1103

Query: 1065 LPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVL 1124
            LP     L+  T +PVV+EA  AS                             RRV++VL
Sbjct: 1104 LP---CVLRASTPAPVVLEAVHAS-----------------------------RRVLIVL 1131

Query: 1125 TKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVE-ENIVPEAESDIELKPYLKSCMKI-RW 1182
            T+NFL TEWSR +FR+A+HEAL  +T +L++V+ EN  PE E D EL+PYL++   I  W
Sbjct: 1132 TRNFLLTEWSRFEFRAALHEALRGRTAQLIIVQAENAYPEVELDRELRPYLRTAAAILTW 1191

Query: 1183 GEKRFWERLRYAMPTCDN----SKKS-CNYRRNINNYTIDSGTGRRSIEAHHTHPYSSQH 1237
             EKRFWERLRYA+P+  +    SK S   Y+RNIN YT+D G G  S+E         Q 
Sbjct: 1192 NEKRFWERLRYAIPSAGDISIESKSSPLVYKRNINTYTLD-GVG--SVEKTGVSTLRGQE 1248

Query: 1238 ISSHPLFKAS---TVISKNHNQEDLAYSSATTATP--------SPKPHRL---HCYTNA- 1282
                 LFK S   T +   H     AYS  T + P        SP+P RL   H Y +A 
Sbjct: 1249 -RQRSLFKDSSPATALMLQHAPP--AYSCGTVSVPQQQQLPPSSPQP-RLTVNHAYRDAV 1304

Query: 1283 ---------------------SDKPVSDHIYSSIDT 1297
                                   +P+S+HIYSSID+
Sbjct: 1305 TVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSSIDS 1340

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027964|ref|XP_003697682.1| PREDICTED: protein toll-like [Apis florea]

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1360 (49%), Positives = 870/1360 (63%), Gaps = 117/1360 (8%)

Query: 7    NCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKS 66
            +C W  E  +  R S  C L  L  G  + L     D   KL I C      +SS   +S
Sbjct: 30   SCKWLSEGGNDTR-SADCTLRVLDPGAITGL-VASLDGALKLRIRCSDVHHFESSFNAQS 87

Query: 67   FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            +Q + SL EL +  CK++ +P   F  L  LK+LT+ T N  W  S+ L+L P S  GLR
Sbjct: 88   WQRLTSLHELHVHGCKVLRIPEGAFQPLLELKKLTVQTFNSVWGASRFLELAPDSFLGLR 147

Query: 127  ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
            EL  L I  SN++++  +  CSL N+QTLNL+ N +RDI+ +G   RR S + + G   E
Sbjct: 148  ELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLN-RRDSVDGSDGNG-E 205

Query: 187  CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
             S   D+RILDLS N++  L + S +   R+LQ LHL+ N I +IA +A   L+ LR  N
Sbjct: 206  SSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFN 265

Query: 247  ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
             S N L SLPEGLF+S RD+ EI+   N L +L +G+F +LEQLLVL+L+ N L S+ +D
Sbjct: 266  ASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVD 325

Query: 307  ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
            ETTF+GLIRLI+LNLS N LT IDA+ FKDL FLQ LDLRNNSI  IE NAFL LYNLHT
Sbjct: 326  ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHT 385

Query: 367  IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
            + LS+N++H + A LFNGL+VL++LTLS N + +ID  AF+NCS LKELDLS N +  +P
Sbjct: 386  LELSDNKLHTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVP 445

Query: 427  SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
             AL +L  LKTLDLGEN+IS   NGSF+NL QLT LRL+ N+IGNLS GML++LP+L++L
Sbjct: 446  DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQIL 505

Query: 487  NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
            NL++NK+  +E   FE+N RL AIRLD NFL+DINGVFT +A LL LNLSENH+ WFDYA
Sbjct: 506  NLARNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHIEWFDYA 565

Query: 547  MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
             +PGNLKWLDIHGN+I SL NYY+I+D   +K LDASHNRI E+S LS+P+SVE+LFINN
Sbjct: 566  FIPGNLKWLDIHGNFIESLGNYYKIRDS-KVKTLDASHNRITELSPLSVPDSVELLFINN 624

Query: 607  NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
            N I  V+P+TF DK NL RVD+YAN I  ++LT+L L  V +++ LPEFY+GGNPF+C+C
Sbjct: 625  NYINLVRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAEDRPLPEFYIGGNPFNCNC 684

Query: 667  SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC 726
            SMDWLP INN TS    R+YP+IMDLDNV+C+ +  RG   + AS A   Q+LC Y+ HC
Sbjct: 685  SMDWLPGINNQTS---TREYPRIMDLDNVMCRTSGPRGVAIVSASTARSEQFLCRYEAHC 741

Query: 727  FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDG 786
            FALCHCC+FDACDCEMTCP  C C++D+ WNTN VDCS  ++  +P RIPMDAT VYLDG
Sbjct: 742  FALCHCCDFDACDCEMTCPAGCKCYNDRTWNTNAVDCSGLEVEEIPRRIPMDATEVYLDG 801

Query: 787  NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
            N  + + NHVFIGRKNM  LYVN S IE I N+TFNGL++LQ+LHLE+N I    G+EF+
Sbjct: 802  NVLRELQNHVFIGRKNMRVLYVNGSDIESIQNRTFNGLNNLQILHLEDNRIRELKGFEFE 861

Query: 847  NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN 906
             L  L ELYLQ N I +I N TF  L SL++L+L GNRL +F  + +  N+ L ++ LG+
Sbjct: 862  RLSHLRELYLQNNLIGFIGNLTFLPLRSLEILRLSGNRLVTFPVWQVTLNARLVELSLGS 921

Query: 907  NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID-ESSPPIRKEIDLNSTTCTEYYATS 965
            NP+SC C  LQEL +W+ DN++KV D  D+ C    ++ P  R+ +++N T C++Y++  
Sbjct: 922  NPWSCRCKFLQELSSWVSDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYFSQG 981

Query: 966  SVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSK 1025
             VI SIMVSDYLP +  T    LV L++I+  F+F++    W Y+KYG+R    K   S 
Sbjct: 982  GVIESIMVSDYLPLVAATLSGVLVLLVIIVLAFIFRESVGAWAYSKYGLRFLRAKPGKSS 1041

Query: 1026 H-------------FGEDREKL--------PKDEEFVLQSIVAELEHGNPSYQLCLHYRD 1064
                             DRE+L        P DE+FVL S+  ELEHG    +LCLH+RD
Sbjct: 1042 GTAAMASAAPMPACCDSDRERLYDCYVCYSPNDEDFVLHSLAVELEHGTAGLRLCLHHRD 1101

Query: 1065 LPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVL 1124
            LP     L+  T +PVV+EA  AS                             RRV++VL
Sbjct: 1102 LP---CVLRASTPAPVVLEAVHAS-----------------------------RRVLIVL 1129

Query: 1125 TKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVE-ENIVPEAESDIELKPYLKSCMKI-RW 1182
            T+NFL TEWSR +FR+A+HEAL  +T +L++V+ EN  PE E D EL+PYL++   I  W
Sbjct: 1130 TRNFLLTEWSRFEFRAALHEALRGRTSQLIIVQAENAYPEVELDRELRPYLRTAAAILTW 1189

Query: 1183 GEKRFWERLRYAMPTCDN---------SKKS-CNYRRNINNYTIDSGTGRRSIEAHHTHP 1232
             EKRFWERLRYA+P+  +         SK S   Y+RNIN YT+D G G           
Sbjct: 1190 NEKRFWERLRYAIPSTTSTMMGDISIESKSSPLVYKRNINTYTLD-GVGSEKTSVSTLRG 1248

Query: 1233 YSSQHISSHPLFKAS---TVISKNHNQEDLAYSSATTATP-------SPKPHRL---HCY 1279
               Q      LFK S   T +   H     AYS  T + P       SP+P RL   H Y
Sbjct: 1249 QERQ----RSLFKDSSPTTALMLQHAPP--AYSCGTVSVPQQQLPPSSPQP-RLTVNHAY 1301

Query: 1280 TNA----------------------SDKPVSDHIYSSIDT 1297
             +A                        +P+S+HIYSSID+
Sbjct: 1302 RDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSSIDS 1341

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1344
FB|FBgn0034476	1446	Toll-7 "Toll-7" [Drosophila me	0.809	0.752	0.465	1e-310
FB|FBgn0004364	1389	18w "18 wheeler" [Drosophila m	0.805	0.778	0.442	5.3e-283
FB|FBgn0036494	1514	Toll-6 "Toll-6" [Drosophila me	0.821	0.729	0.386	6.1e-240
FB|FBgn0029114	1346	Tollo "Tollo" [Drosophila mela	0.688	0.687	0.387	1.2e-201
WB|WBGene00006593	1221	tol-1 [Caenorhabditis elegans	0.415	0.457	0.271	8.1e-70
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.352	0.432	0.243	1.2e-36
ZFIN|ZDB-GENE-030722-3	1524	slit1a "slit homolog 1a (Droso	0.375	0.331	0.253	2.2e-24
MGI|MGI:1315202	1523	Slit3 "slit homolog 3 (Drosoph	0.279	0.246	0.237	4e-15
UNIPROTKB|O75094	1523	SLIT3 "Slit homolog 3 protein"	0.279	0.246	0.234	2.3e-14
UNIPROTKB|J3KNP3	1530	SLIT3 "Slit homolog 3 protein"	0.279	0.245	0.234	2.3e-14

FB|FBgn0034476 Toll-7 "Toll-7" [Drosophila melanogaster (taxid:7227)]

 Score = 2645 (936.1 bits), Expect = 1.0e-310, Sum P(3) = 1.0e-310
 Identities = 529/1136 (46%), Positives = 720/1136 (63%)

Query:     5 PEN-CSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSIT 63
             P N CSW     S    SV C L  + +  G +L     D  ++L I C    L +S++ 
Sbjct:    73 PANQCSWSYNGTS----SVHCALRLIERQPGLDLQ--GADGSSQLTIQCSELYLFESTLP 126

Query:    64 TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
                F  + +LE L++ +CKL++LP + F GL  LK L ++T N +W  ++ L+L P SL 
Sbjct:   127 VAVFARLQTLEALRLDSCKLLQLPNNAFEGLATLKSLRLSTHNSEWGPTRTLELFPDSLG 186

Query:   124 GLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGE 183
             GL++L  L               C + N+Q LNL+RN IR  + +GFA     A   SG 
Sbjct:   187 GLKQLTDLDLGDNNLRQLPSGFLCPVGNLQVLNLTRNRIRTAEQMGFADMNCGA--GSG- 243

Query:   184 KIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXX 243
                 S G +L++LD SHN+LR++ +  GI++ RRLQ+L+L  N +S+++  A        
Sbjct:   244 ----SAGSELQVLDASHNELRSISESWGISRLRRLQHLNLAYNNLSELSGEALAGLASLR 299

Query:   244 XXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXX 303
                       +LPEGLF+  +++ EI+ Q+N L EL +GLFH+LEQ              
Sbjct:   300 IVNLSNNHLETLPEGLFAGSKELREIHLQQNELYELPKGLFHRLEQLLVVDLSGNQLTSN 359

Query:   304 XIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYN 363
              +D TTF G              TRID +TFK+L FLQ L+LRNNSIG+IEDNAFL LYN
Sbjct:   360 HVDNTTFAGLIRLIVLNLAHNALTRIDYRTFKELYFLQILNLRNNSIGHIEDNAFLPLYN 419

Query:   364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
             LHT+ L+ENR+H +   LFNGLYVLSKLTL+NNL+  ++   FKNCS LKELDLSSN + 
Sbjct:   420 LHTLNLAENRLHTLDDKLFNGLYVLSKLTLNNNLISVVEPAVFKNCSDLKELDLSSNQLN 479

Query:   424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
             E+P AL +L  L+TLDLGENQI   +N SFKNL QLT LRL+DN IGN++ GM  +LP L
Sbjct:   480 EVPRALQDLAMLRTLDLGENQIRTFDNQSFKNLHQLTGLRLIDNQIGNITVGMFQDLPRL 539

Query:   484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWF 543
              VLNL+KN+I  IE G+F+KN  L AIRLD NFL DINGVF  L  LLWLNLSENHLVWF
Sbjct:   540 SVLNLAKNRIQSIERGSFDKNFELEAIRLDRNFLADINGVFATLVSLLWLNLSENHLVWF 599

Query:   544 DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLF 603
             DYA +P NLKWLDIHGNYI +L NYY++++ + +K LDASHNRI EI  +SIPN++E+LF
Sbjct:   600 DYAFIPSNLKWLDIHGNYIEALGNYYKLQEEIRVKTLDASHNRITEIGPMSIPNTIELLF 659

Query:   604 INNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFD 663
             INNNLI +V+P+ F DK+NLARVD+YAN ++KL L  LR+ PV   K LPEFYLGGNPF+
Sbjct:   660 INNNLIGNVQPNAFVDKANLARVDLYANQLSKLQLQQLRVAPVVAPKPLPEFYLGGNPFE 719

Query:   664 CDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYD 723
             CDC+MDWL  INN T+    RQ+P++MD+ N+ C M ++RG+   P S   P  +LC Y+
Sbjct:   720 CDCTMDWLQRINNLTT----RQHPRVMDMANIECVMPHARGAAVRPLSGLRPQDFLCRYE 775

Query:   724 IHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVY 783
              HCFALCHCC+FDACDCEMTCP NC+C+HDQ W+TNVVDC  QQ + +P R+PMD++ VY
Sbjct:   776 SHCFALCHCCDFDACDCEMTCPSNCTCYHDQIWSTNVVDCGGQQTTELPRRVPMDSSVVY 835

Query:   784 LDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY 843
             LDGN F  + NH FIGRKN+ +LYVN SQ+  I N+TF  L+SLQ+LHL +N +   +GY
Sbjct:   836 LDGNNFPVLKNHAFIGRKNLRALYVNGSQVAAIQNRTFASLASLQLLHLADNKLRTLHGY 895

Query:   844 EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN---SMLR 900
             EF+ L  L ELYLQ N++  I N T   L +L+++++DGNRL +   + ++     + L+
Sbjct:   896 EFEQLSALRELYLQNNQLTTIENATLAPLAALELIRIDGNRLVTLPIWQMHATHFGTRLK 955

Query:   901 KVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV----------IDESSPPI--- 947
              + LG N +SC C  LQ L +++ DN+  V+D  DI C+          +++SS      
Sbjct:   956 SISLGRNQWSCRCQFLQALTSYVADNALIVQDAQDIYCMAASSGTGSAALEDSSSNSGSL 1015

Query:   948 -RKEIDLNST--TCTEYYATSSVIASIMVSDYLPXXXXXXXXXXXXXXXXXXXXXXKDPF 1004
              ++E+D N+T   CT+YY+  S++   +   Y+P                      ++  
Sbjct:  1016 EKRELDFNATGAACTDYYSGGSMLQHGIPESYIPLLAAALALLFLLVVIAMVFAF-RESL 1074

Query:  1005 RVWLYTKYGIRLFNFKATSSKHFGEDREKL--PKDEEFVLQSIVAELEHGNPSYQLCLHY 1062
             R+WL+  YG+R+F  +   S+    D   L   KD EFV Q + A+LE G P  ++CL +
Sbjct:  1075 RIWLFAHYGVRVFGPRCEESEKL-YDAVLLHSAKDSEFVCQHLAAQLETGRPPLRVCLQH 1133

Query:  1063 RDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASR 1118
             RDL H + + Q       ++EA   SRRV+++LT+NFLQTEW+R +      +A R
Sbjct:  1134 RDLAHDATHYQ-------LLEATRVSRRVVILLTRNFLQTEWARCELRRSVHDALR 1182

GO:0005886 "plasma membrane" evidence=NAS

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0002752 "cell surface pattern recognition receptor signaling pathway" evidence=IC

GO:0008329 "pattern recognition receptor activity" evidence=IC

GO:0051607 "defense response to virus" evidence=IMP

GO:0046790 "virion binding" evidence=IDA

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0010508 "positive regulation of autophagy" evidence=IMP

FB|FBgn0004364 18w "18 wheeler" [Drosophila melanogaster (taxid:7227)]

 Score = 2459 (870.7 bits), Expect = 5.3e-283, Sum P(2) = 5.3e-283
 Identities = 493/1115 (44%), Positives = 689/1115 (61%)

Query:     6 ENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTK 65
             + C+W+     +  + + C++  L  G GS L     +   +L++ C   +L  S +   
Sbjct:    28 QQCNWQY---GLTTMDIRCSVRALESGTGSPLDLQVAEAAGRLDLQCSQELLHASELAPG 84

Query:    66 SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
              F+ +  L EL+I  CKL  +P + F GL +LKRLT+ + N  W   K L+L   S  GL
Sbjct:    85 LFRQLQKLSELRIDACKLQRVPPNAFEGLMSLKRLTLESHNAVWGPGKTLELHGQSFQGL 144

Query:   126 RELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
             +EL  L           + V+CS+ ++Q LNL++N IR  + LGF+ +  +  + S    
Sbjct:   145 KELSELHLGDNNIRQLPEGVWCSMPSLQLLNLTQNRIRSAEFLGFSEKLCAGSALSNANG 204

Query:   186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAXXXXXXX 245
               SGG +L+ LD+S N+LR+L D  G ++ RRLQ L L++N IS +APNA          
Sbjct:   205 AVSGGSELQTLDVSFNELRSLPDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVL 264

Query:   246 XXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXXXXXXXI 305
                    VSLP   F+  +++ E++ Q N L EL +GL H+LEQ               +
Sbjct:   265 NISYNHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHV 324

Query:   306 DETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
             D +TF G              TRI +KTFK+L FLQ LD+RNNSIG+IE+ AFL LYNLH
Sbjct:   325 DNSTFAGLIRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLH 384

Query:   366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
             T+ L+ENR+H +   +FNGLYVL+KLTL+NNL+  ++S+AF+NCS LKELDLSSN + E+
Sbjct:   385 TLNLAENRLHTLDNRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEV 444

Query:   426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
             P A+ +L  LKTLDLGENQIS+ +N +F+NL QLT LRL+DN IGN++ GM  +LP L V
Sbjct:   445 PEAVQDLSMLKTLDLGENQISEFKNNTFRNLNQLTGLRLIDNRIGNITVGMFQDLPRLSV 504

Query:   486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDY 545
             LNL+KN+I  IE G F+KN  + AIRLD NFLTDING+F  LA LLWLNLSENHLVWFDY
Sbjct:   505 LNLAKNRIQSIERGAFDKNTEIEAIRLDKNFLTDINGIFATLASLLWLNLSENHLVWFDY 564

Query:   546 AMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
             A +P NLKWLDIHGNYI +L NYY++++ + +  LDASHNRI EI  +S+PNS+E+LFIN
Sbjct:   565 AFIPSNLKWLDIHGNYIEALGNYYKLQEEIRVTTLDASHNRITEIGAMSVPNSIELLFIN 624

Query:   606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
             NN+I  ++ +TF DK+ LARVD+YAN ++K+ L ALR+ PV   K +PEFYLGGNPF+CD
Sbjct:   625 NNIIGQIQANTFVDKTRLARVDLYANVLSKISLNALRVAPVSAEKPVPEFYLGGNPFECD 684

Query:   666 CSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIH 725
             CSM+WL  INN T+    RQ+P ++DL N+ C M +SR +   P +  + S ++C Y+ H
Sbjct:   685 CSMEWLQRINNLTT----RQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKYESH 740

Query:   726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
             C   CHCCE++ C+CE+ CP NCSCFHD  W TN+VDC  Q ++ +P RIP D + +YLD
Sbjct:   741 CPPTCHCCEYEQCECEVICPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLYLD 800

Query:   786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
             GN    +      GR+N+ +LY+N S +  + N +   L +L+VLHLENN +T   G EF
Sbjct:   801 GNNMPELEVGHLTGRRNLRALYLNASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEF 860

Query:   846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
              +L  L ELYL  N + +I+N TF  L+SL+VL+LD NRL S     L     L+ + LG
Sbjct:   861 RSLGLLRELYLHNNMLTHISNATFEPLVSLEVLRLDNNRLSSLP--HLQYRHSLQGLTLG 918

Query:   906 NNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL-----NSTTCTE 960
              N +SC C  L+EL  ++ DN+  V+D  DI C +D     I++E++L     N   C++
Sbjct:   919 RNAWSCRCQQLRELAQFVSDNAMVVRDAHDIYC-LDAG---IKRELELIGNLANGPDCSD 974

Query:   961 YYATSSVIASIMVSDYLPXXXX-----XXXXXXXXXXXXXXXXXXKDPFRVWLYTKYGIR 1015
                 S+  ++I  S  L                            ++  R+WL+  YG+R
Sbjct:   975 LLDASA--SNISSSQDLAGAIGCPCWPAVLVLIFLVVVLIIVFVFRESVRMWLFAHYGVR 1032

Query:  1016 LFNFK-ATSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQ 1074
             +   +   + K +        KD EFV ++I AELEHG P ++LC+  RDLP  + +LQ 
Sbjct:  1033 VCEPRFEDAGKLYDAIILHSEKDYEFVCRNIAAELEHGRPPFRLCIQQRDLPPQASHLQ- 1091

Query:  1075 HTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDF 1109
                   ++E A ASR++ILVLT+N L TEW+R +F
Sbjct:  1092 ------LVEGARASRKIILVLTRNLLATEWNRIEF 1120

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS

GO:0007155 "cell adhesion" evidence=IDA

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0006955 "immune response" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0019731 "antibacterial humoral response" evidence=NAS;IMP;TAS

GO:0048598 "embryonic morphogenesis" evidence=TAS

GO:0006952 "defense response" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0019730 "antimicrobial humoral response" evidence=IMP

FB|FBgn0036494 Toll-6 "Toll-6" [Drosophila melanogaster (taxid:7227)]

 Score = 2117 (750.3 bits), Expect = 6.1e-240, Sum P(2) = 6.1e-240
 Identities = 446/1153 (38%), Positives = 666/1153 (57%)

Query:     1 MFEVPENCSWKMENESMNR--ISVTCNLNYLGKG-GGSNLSFVPTDLITKLNIDCDATVL 57
             +++ P++C + M    +++  I++TCNL  +      +N S +P +    L+I C+  ++
Sbjct:    74 LYDAPDDCHF-MPAAGLDQPEIALTCNLRTVNSEFDTTNFSVIPAEHTIALHILCNDEIM 132

Query:    58 LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
               S +  +SF ++  L++L I  CKL  L   V  GL  L+ LT+ T N+ W  +   ++
Sbjct:   133 AKSRLEAQSFAHLVRLQQLSIQYCKLGRLGRQVLDGLEQLRNLTLRTHNILWP-ALNFEI 191

Query:   118 VPGSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVR---- 173
                +    R L+ L           D++FC+L+ +  LN+S N ++D++ LGF  R    
Sbjct:   192 EADAFSVTRRLERLDLSSNNIWSLPDNIFCTLSELSALNMSENRLQDVNELGFRDRSQEP 251

Query:   174 -RASAESNS----GEKIECSG---GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN 225
                S ES S     +K   S     +DL  LD+SHN    L   +G    RRL+ L + N
Sbjct:   252 TNGSTESTSTTESAKKSSSSSTSCSLDLEYLDVSHNDFVVL-PANGFGTLRRLRVLSVNN 310

Query:   226 NEISQIAPNAFVAXXXXXXXXXXXXXXVSLPEGLFSS-CRDISEIYAQKNSLVELSRGLF 284
             N IS IA  A                 V+LP  LF+   + I E+Y Q NS+  L+  LF
Sbjct:   311 NGISMIADKALSGLKNLQILNLSSNKIVALPTELFAEQAKIIQEVYLQNNSISVLNPQLF 370

Query:   285 HKLEQXXXXXXXXXXXXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLD 344
               L+Q               ID+ TF+G              T+++ + F DL  LQ L+
Sbjct:   371 SNLDQLQALDLSMNQITSTWIDKNTFVGLIRLVLLNLSHNKLTKLEPEIFSDLYTLQILN 430

Query:   345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
             LR+N +  I  + F  + NLHT+ LS N++ ++ A+  NGLYVLS L+L NN L+ +   
Sbjct:   431 LRHNQLENIAADTFAPMNNLHTLLLSHNKLKYLDAYALNGLYVLSLLSLDNNALIGVHPD 490

Query:   405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
             AF+NCSAL++L+L+ N +  +P AL  +  L+T+DLGEN I+ +E+ +FK L  L  LRL
Sbjct:   491 AFRNCSALQDLNLNGNQLKTVPLALRNMRHLRTVDLGENMITVMEDSAFKGLGNLYGLRL 550

Query:   465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
             + N + N++     +LP+L++LNL++N+I  +E G FE    + A+RLD N L DING+F
Sbjct:   551 IGNYLENITMHTFRDLPNLQILNLARNRIAVVEPGAFEMTSSIQAVRLDGNELNDINGLF 610

Query:   525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
             + +  LLWLN+S+N L  FDY  VP  L+WLD+H N +SSL+N + +   L ++ LD S 
Sbjct:   611 SNMPSLLWLNISDNRLESFDYGHVPSTLQWLDLHKNRLSSLSNRFGLDSELKLQTLDVSF 670

Query:   585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
             N++  I   SIPNS+E+LF+N+NLI +V P TF  K+NL RVD+YAN IT LD+ +LR+ 
Sbjct:   671 NQLQRIGPSSIPNSIELLFLNDNLITTVDPDTFMHKTNLTRVDLYANQITTLDIKSLRIL 730

Query:   645 PVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRG 704
             PV +++ LPEFY+GGNPF CDC++DWL  IN+ TS    RQYP+IMDL+ + CK+  +R 
Sbjct:   731 PVWEHRALPEFYIGGNPFTCDCNIDWLQKINHITS----RQYPRIMDLETIYCKLLNNRE 786

Query:   705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS 764
               ++P  EA P  +LC Y  HCFA+CHCCEFDACDCEMTCP NC+CFHDQ W+TN+V+CS
Sbjct:   787 RAYIPLIEAEPKHFLCTYKTHCFAVCHCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECS 846

Query:   765 EQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGL 824
                 S +P R+PMD + +Y+DGN F  +  H F+GRKN+  LY NNS +  I N TF+GL
Sbjct:   847 GAAYSEMPRRVPMDTSELYIDGNNFVELAGHSFLGRKNLAVLYANNSNVAHIYNTTFSGL 906

Query:   825 SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNR 884
               L +LHLE+N I    G EF NLE L ELYLQ N+I  IANG+F  L  L+VL+LDGNR
Sbjct:   907 KRLLILHLEDNHIISLEGNEFHNLENLRELYLQSNKIASIANGSFQMLRKLEVLRLDGNR 966

Query:   885 LKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESS 944
             L  F  + L+ N  L ++ L +N +SC C  L   + ++  +S K+ D   +SC+ + ++
Sbjct:   967 LMHFEVWQLSANPYLVEISLADNQWSCECGYLARFRNYLGQSSEKIIDASRVSCIYNNAT 1026

Query:   945 PPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPXXXXXXXXXXXXXXXXXXXXXXKDPF 1004
               +R++   N T CT     +  + +  +   LP                      +   
Sbjct:  1027 SVLREK---NGTKCTLRDGVAHYMHTNEIEGLLPLLLVATCAFVAFFGLIFGLFCYRHEL 1083

Query:  1005 RVWLYTKYGIRLFNFKATSSKHFGE-DREKLP---------KDEEFVLQSIVAELEHGNP 1054
             ++W ++     L NF   S +   + D+E+ P         +DE FV Q +   LE+ + 
Sbjct:  1084 KIWAHSTNC--LMNFCYKSPRFVDQLDKER-PNDAYFAYSLQDEHFVNQILAQTLEN-DI 1139

Query:  1055 SYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDF---LI 1111
              Y+LCLHYRD+ + + Y+     +  +IEAAE++++ +LVL+KNFL  EWSR ++   L 
Sbjct:  1140 GYRLCLHYRDV-NINAYI-----TDALIEAAESAKQFVLVLSKNFLYNEWSRFEYKSALH 1193

Query:  1112 EAAEASRRVILVL 1124
             E  +  +RV+ +L
Sbjct:  1194 ELVKRRKRVVFIL 1206

GO:0004888 "transmembrane signaling receptor activity" evidence=ISS;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA;ISS

FB|FBgn0029114 Tollo "Tollo" [Drosophila melanogaster (taxid:7227)]

 Score = 1762 (625.3 bits), Expect = 1.2e-201, Sum P(2) = 1.2e-201
 Identities = 367/947 (38%), Positives = 547/947 (57%)

Query:     1 MFEVPENCSWKMENESMNRISVTCNLNYLGKG-GGSNLSFVPTDLITKLNIDCDATVLLD 59
             +++ P+ C W    E  + I++ C+L  +      +N S +      +L ++C+  +   
Sbjct:    29 LYQAPDECRWSGGGE--HDITLVCHLRTINSELENTNFSVIQPQNTVRLRLECNDALFFQ 86

Query:    60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             SS++  SF+++  L +L I  CKL  L    F GL+ L+ LTI T N  W  +  L++  
Sbjct:    87 SSLSPDSFRSLVELRDLTIEYCKLGNLTDGSFRGLQELRNLTIRTHNGDWS-TMSLEMAS 145

Query:   120 GSLDGLRELQVLXXXXXXXXXXXDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
              S    R+L+ L           D + C L ++Q LN S N I+DI    F     SA  
Sbjct:   146 NSFVEFRQLERLDLSLNNIWLIPDGMVCPLKSLQHLNASYNKIQDISNFYF-----SASL 200

Query:   180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAX 239
             +S +   C  G  L+ LDLS NK+ +L   + ++   RL +L++  N +S +A  AF   
Sbjct:   201 SSRKARVC--GSTLQSLDLSANKMVSLPT-AMLSALGRLTHLNMAKNSMSFLADRAFEGL 257

Query:   240 XXXXXXXXXXXXXVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQXXXXXXXXXX 299
                           SLP  LF+  + + EIY + NS+  L+ G+F +L +          
Sbjct:   258 LSLRVVDLSANRLTSLPPELFAETKQLQEIYLRNNSINVLAPGIFGELAELLVLDLASNE 317

Query:   300 XXXXXIDETTFIGXXXXXXXXXXXXXXTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
                  I+  TF+G              +R++A  F+ L  LQ L L +N I  +    F 
Sbjct:   318 LNSQWINAATFVGLKRLMMLDLSANKISRLEAHIFRPLASLQILKLEDNYIDQLPGGIFA 377

Query:   360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
              L NLHT+ LS NRI  I      GL  L  L+L  N +  +D ++  NCS L++L L+ 
Sbjct:   378 DLTNLHTLILSRNRISVIEQRTLQGLKNLLVLSLDFNRISRMDQRSLVNCSQLQDLHLND 437

Query:   420 NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE 479
             N +  +P AL+ +  LKTLD+GEN IS+IEN S   L+ L  LR+ +N++ ++  G+   
Sbjct:   438 NKLQAVPEALAHVQLLKTLDVGENMISQIENTSITQLESLYGLRMTENSLTHIRRGVFDR 497

Query:   480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENH 539
             + SL++LNLS+NK+  IE G+ ++N +L AIRLD N L  I G+FT L  L+WLN+S N 
Sbjct:   498 MSSLQILNLSQNKLKSIEAGSLQRNSQLQAIRLDGNQLKSIAGLFTELPNLVWLNISGNR 557

Query:   540 LVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
             L  FDY+ +P  L+WLD+  N I+ L NY+EI+  LS+   DAS+N + EI+  SIPNSV
Sbjct:   558 LEKFDYSHIPIGLQWLDVRANRITQLGNYFEIESELSLSTFDASYNLLTEITASSIPNSV 617

Query:   600 EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG 659
             EVL++N+N I  ++P+TFF K NL RVD+  N +T L+  ALRL P+ +++ +PEFY+G 
Sbjct:   618 EVLYLNDNQISKIQPYTFFKKPNLTRVDLVRNRLTTLEPNALRLSPIAEDREIPEFYIGH 677

Query:   660 NPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYL 719
             N ++CDC++DWL  +N  +     R  P++MDLD + C++ Y+RGS+H+   EA    +L
Sbjct:   678 NAYECDCNLDWLQKVNRES-----RTQPQLMDLDQIHCRLAYARGSSHVSLIEAKSDDFL 732

Query:   720 CPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQIS-TVPPRIPMD 778
             C Y  HCFALCHCC+F ACDC+M CP  CSC+HDQ+W +NVVDCS      T+P  IPMD
Sbjct:   733 CKYASHCFALCHCCDFQACDCKMECPDRCSCYHDQSWTSNVVDCSRASYEQTLPSHIPMD 792

Query:   779 ATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
             +T +YLDGN F+ + +H FIGRK +  L++N+S+IEV+ N+TF GL  L+VL L++N + 
Sbjct:   793 STQLYLDGNNFRELQSHAFIGRKRLKVLHLNHSRIEVLHNRTFYGLLELEVLQLQSNQLK 852

Query:   839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
                G EF  L+ L ELYLQ N I  I   TF  L  L++L+LD N + SF  ++    S 
Sbjct:   853 ALNGNEFQGLDNLQELYLQHNAIATIDTLTFTHLYHLKILRLDHNAITSFAVWNF-LPSY 911

Query:   899 LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISC-VIDESS 944
             L ++ L +NP++CSC  + +L+ +I +    V D L + C VI  +S
Sbjct:   912 LNELRLASNPWTCSCEFIDKLRDYI-NRHEYVVDKLKMKCDVISGNS 957

GO:0005886 "plasma membrane" evidence=ISS

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0006952 "defense response" evidence=NAS

GO:0016021 "integral to membrane" evidence=ISS

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IEA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA

GO:0008063 "Toll signaling pathway" evidence=IEA

GO:0009620 "response to fungus" evidence=IEA

GO:0060049 "regulation of protein glycosylation" evidence=IMP

GO:0048935 "peripheral nervous system neuron development" evidence=IMP

GO:0002227 "innate immune response in mucosa" evidence=IMP

WB|WBGene00006593 tol-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 615 (221.5 bits), Expect = 8.1e-70, Sum P(3) = 8.1e-70
 Identities = 158/581 (27%), Positives = 279/581 (48%)

Query:   340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
             +  L L +NSI  +      +  NL T+ LS N++      +      +  L LSNN L 
Sbjct:   332 IAHLHLEHNSIEQLTGGVLANATNLQTLDLSSNQLRVFRDEVLPENSKIGNLRLSNNSLE 391

Query:   400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
              ++  +      L+ LDLS N + E+P+A+ ++  LK +DL  N+I+K+       ++QL
Sbjct:   392 LLEPSSLSGLK-LESLDLSHNKLTEVPAAIGKVEQLKKVDLSHNRIAKVYQYVLNKIKQL 450

Query:   460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
               + L +N + ++   +  +   L  L++S N+I  +    F +  +L  I +  N +  
Sbjct:   451 HTVDLSNNQLQSIGPYIFSDSSELHSLDVSNNEISLLFKDAFARCPKLRKISMKMNKIKS 510

Query:   520 INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579
             ++   T  + L  L++S N ++   ++ +P NL+ L+   N I+ L          ++K+
Sbjct:   511 LDEGLTEASGLRRLDVSHNEILVLKWSALPENLEILNADNNDINLLTAASMSPSTANLKS 570

Query:   580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
             +  S+N I  ++   IPNS+E L ++NN +  +       KS L R+++  N +T +   
Sbjct:   571 VSLSNNGITIMNADQIPNSLESLDVSNNRLAKLGKTALAAKSQLRRLNLKGNLLTVVATE 630

Query:   640 ALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKM 699
             ++++  V     L +  +  NP  CDC M W+          +    PK++  D+     
Sbjct:   631 SMKV--VEAVHPL-KVEISENPLICDCQMGWM----------IGGAKPKVLIQDSETASC 677

Query:   700 TYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTN 759
             +++     +     +    LCPY   C   C CC++  CDC+  CP NC CF D  +N N
Sbjct:   678 SHAVDGHQIQIQSLSKKDLLCPYKSVCEPECICCQYGNCDCKSVCPANCRCFRDDQFNIN 737

Query:   760 VVDCSEQQISTVPPR------IPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI 813
             +V C     S VP R      +P+ AT + L G T   +  H FIGR  +  L++N + +
Sbjct:   738 IVRCHGNS-SMVPKREFVVSELPVSATEIILSGVTLPQLRTHSFIGRLRLQRLHINGTGL 796

Query:   814 EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI 873
               I  + F+ L +L+ L L +N +    G EF    ++S+L+L  NR   ++ G F  L 
Sbjct:   797 RSIQPKAFHTLPALKTLDLSDNSLISLSGEEFLKCGEVSQLFLNGNRFSTLSRGIFEKLP 856

Query:   874 SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
             +L+ L L  N L+      L++ + L K+ L +NP  C C+
Sbjct:   857 NLKYLTLHNNSLEDIPQV-LHSTA-LSKISLSSNPLRCDCS 895

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0009790 "embryo development" evidence=IMP

GO:0006952 "defense response" evidence=IMP

GO:0005623 "cell" evidence=IDA

GO:0030424 "axon" evidence=ND

GO:0005057 "receptor signaling protein activity" evidence=ISS

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 290 (107.1 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 128/525 (24%), Positives = 231/525 (44%)

Query:   340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
             L++L+L +N +  +  + F    ++  I + +N I  +   +F  L  ++ + LS NL  
Sbjct:   223 LKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFR 282

Query:   400 NIDSKAFKNCSALKELDLSSNAI--VEIPSAL-SELPFLKTLDLGENQISKIENGSFKNL 456
             ++    F +   L E+ L +N +    +PS L +  P L+ L L   ++  +    F++ 
Sbjct:   283 SLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRL-RAELQSLPGDLFEHS 341

Query:   457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
              Q+T++ L DN +  L + +L    +L  L+LS N++  +    F     L  +RL+ N 
Sbjct:   342 TQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNL 401

Query:   517 LTDING-VFTYLAQLLWLNLSENHLVWFDY-AMVPGN-LKWLDIHGNYI----------- 562
             LT I+G +F+ L  L+ L +S N L   D  A V  N L+ L +  N I           
Sbjct:   402 LTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQPLLDIML 461

Query:   563 -SSLNNYYEIKDGLSIKNLDASHNRILEISE--LSIPNSVEVLFINNNLIKSVKPHTF-F 618
              + +N+ +    GL   NL   +N I+ +     +    +  L ++ N I S+      F
Sbjct:   462 QTQINSPFGYMHGLLTLNL--RNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAF 519

Query:   619 DKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDW-LPIINNN 677
                N   V++  N I ++ L          N  L    L  NP  CDC++ W + ++   
Sbjct:   520 LSQNRLHVNMTHNKIRRIALPEDVHLGEGYNNNLVHVDLNDNPLVCDCTILWFIQLVRGV 579

Query:   678 TSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDA 737
               P   RQ+   +  D +VC        T  P  +  P   +CP D           F  
Sbjct:   580 HKPQYSRQFK--LRTDRLVCSQPNVLEGT--PVRQIEPQTLICPLD-----------FSD 624

Query:   738 CDCEMTCPKNCSCFHDQNWNTN-VVDCSEQQISTVPPRIP-----MDATHVYLDGNTFKT 791
                E  CP+ C+C H + ++   V++C    ++ VP R+P     M    ++L+ NT   
Sbjct:   625 DPRERKCPRGCNC-HVRTYDKALVINCHSGNLTHVP-RLPNLHKNMQLMELHLENNTLLR 682

Query:   792 IPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVL--HLE 833
             +P+    G +++ SL++  N+   + ++Q    L+ L +   HL+
Sbjct:   683 LPSANTPGYESVTSLHLAGNNLTSIDVDQLPTNLTHLDISWNHLQ 727

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030722-3 slit1a "slit homolog 1a (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
 Identities = 146/575 (25%), Positives = 238/575 (41%)

Query:   340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
             L+R+DL NN I  +  +AF  L +L+++ L  N+I  +   +F+GL+ L  L L+ N + 
Sbjct:   328 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITDLPRGVFDGLHALQLLLLNANKIH 387

Query:   400 NIDSKAFKNCSALKELDLSSNAIVEIPSA-LSELPFLKTLDLGENQISKIENGSFKNLQQ 458
              + +  F++   L  L L  N I  +     S L  ++TL L +N           NL+ 
Sbjct:   388 CLRANTFQDLQNLSLLSLYDNKIQTLAKGTFSSLRAIQTLHLAQNPFI-----CDCNLKW 442

Query:   459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAI--RLDSN 515
             L D  L  N I   +SG     P      L+  +I QI+   F  + K   AI    DS 
Sbjct:   443 LADY-LRSNPIE--TSGARCTSPR----RLANKRIGQIKSKKFRCSAKEQYAIPGTEDSR 495

Query:   516 FLTDINGVFTYLAQLLW-LNLSENHLVWFDYAM--VPGNLKWLDIHGNYISSLNNYYEIK 572
                D N      A+     N+ +   +  D     VP +     ++ N I+++      K
Sbjct:   496 LNNDCNNDPVCPAKCRCESNVVDCSNLRLDRIPEHVPASTTEPRLNNNEITTIEAMGAFK 555

Query:   573 DGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLA------ 624
                 +K ++ S+N+I EI + +    +SV  L +  N +       F     L       
Sbjct:   556 TLTHLKKINLSNNKISEIEDGAFEGASSVNELHLTANQLDLAHSGMFRGLEGLRMLMLRN 615

Query:   625 -RVD-IYANDITKL---------DLTALRLKPVPQN--KTLPEFYLGGNPFDCDCSMDWL 671
              R+  I+ N  T L         D T   + P   +  ++L    L  NPF+C+C + WL
Sbjct:   616 NRISCIHNNSFTGLHNVRLLSLYDNTLTTIAPGAFDTLQSLSTLNLLANPFNCNCRLAWL 675

Query:   672 PIINNNTSPSMERQYPKIMDLDNVVC-KMTYSRGSTHLPASEAAPSQYLCPYDIHCFALC 730
                  N          KI+   N  C +  + +    +P  + A   + C  D       
Sbjct:   676 SSWLRNR---------KIVT-GNPRCHRPAFLK---EIPLQDVAAPDFRCEDD------- 715

Query:   731 HCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFK 790
             H  E  +C   + CP +C+C        +VV CS + +  +P   P + T +YLDGN   
Sbjct:   716 H--EDVSCAPPVHCPADCTCLE------SVVRCSNKHLQALPKGTPRNITELYLDGNQLS 767

Query:   791 TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEK 850
             T+P  +    K++  + ++N++I  + N +F  +S L  L L  N +       F  L  
Sbjct:   768 TVPKELS-SFKSLQLVDLSNNRISSLTNSSFTNMSQLTTLILSYNALRCIPTLAFSGLRS 826

Query:   851 LSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
             L  L L  N I  + +G F+   SL  L +  N L
Sbjct:   827 LRLLSLHGNDISELPDGIFSDAQSLSHLAIGANPL 861

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007411 "axon guidance" evidence=NAS

GO:0005576 "extracellular region" evidence=IEA

GO:0045773 "positive regulation of axon extension" evidence=IMP

MGI|MGI:1315202 Slit3 "slit homolog 3 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 97/409 (23%), Positives = 175/409 (42%)

Query:   533 LNLSENHLVWF---DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589
             L+L  N++      D+A +  NL+ L +  N +S +      +D   ++ L  + N++  
Sbjct:    66 LDLDRNNITRITKMDFAGLK-NLRVLHLEDNQVSIIERG-AFQDLKQLERLRLNKNKLQV 123

Query:   590 ISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR-LKPV 646
             + EL   ++ ++  L ++ N I+ +    F   + +  + +  N I+ ++  A R L+ +
Sbjct:   124 LPELLFQSTPKLTRLDLSENQIQGIPRKAFRGVTGVKNLQLDNNHISCIEDGAFRALRDL 183

Query:   647 P----QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQY-PKIMDLDNVVCKMTY 701
                   N  +    +    F+    +  L + +N+        +    +     + + T 
Sbjct:   184 EILTLNNNNISRILV--TSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTL 241

Query:   702 SRGSTHLPASEAAPSQ---YLCPYDIHCFALCHCCEFDACDCE-MTCPKNCSCFHDQNWN 757
                  HL     A  Q   Y+CP         H  E  AC+   ++CP  CSC      +
Sbjct:   242 CMAPVHLRGFSVADVQKKEYVCPGP-------HS-EAPACNANSLSCPSACSC------S 287

Query:   758 TNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
              N+VDC  + ++ +P  +P     + L+ N+ K+IP   F   K +  + ++ +QI  I 
Sbjct:   288 NNIVDCRGKGLTEIPANLPEGIVEIRLEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIA 347

Query:   818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
                F GL SL  L L  N IT      FD L  L  L L  N+I  +   TF  L +L +
Sbjct:   348 PDAFQGLKSLTSLVLYGNKITEIPKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNL 407

Query:   878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926
             L L  N+L++           ++ ++L  NPF C C  L+ L  ++ DN
Sbjct:   408 LSLYDNKLQTISKGLFVPLQSIQTLHLAQNPFVCDCH-LKWLADYLQDN 455

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007411 "axon guidance" evidence=ISO;IDA

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=IGI;IMP

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0016020 "membrane" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

UNIPROTKB|O75094 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 96/409 (23%), Positives = 174/409 (42%)

Query:   533 LNLSENHLVWF---DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589
             L+L  N++      D+A +  NL+ L +  N +S +      +D   ++ L  + N++  
Sbjct:    66 LDLDRNNITRITKMDFAGLK-NLRVLHLEDNQVSVIERG-AFQDLKQLERLRLNKNKLQV 123

Query:   590 ISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR-LKPV 646
             + EL   ++ ++  L ++ N I+ +    F   +++  + +  N I+ ++  A R L+ +
Sbjct:   124 LPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDL 183

Query:   647 P----QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQY-PKIMDLDNVVCKMTY 701
                   N  +    +    F+    +  L + +N+        +    +     V + T 
Sbjct:   184 EILTLNNNNISRILV--TSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTL 241

Query:   702 SRGSTHLPASEAAPSQ---YLCPYDIHCFALCHCCEFDACDCE-MTCPKNCSCFHDQNWN 757
                  HL     A  Q   Y+CP         H  E  +C+   ++CP  C+C      +
Sbjct:   242 CMAPVHLRGFNVADVQKKEYVCPAP-------HS-EPPSCNANSISCPSPCTC------S 287

Query:   758 TNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
              N+VDC  + +  +P  +P     + L+ N+ K IP   F   K +  + ++ +QI  I 
Sbjct:   288 NNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIA 347

Query:   818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
                F GL SL  L L  N IT      FD L  L  L L  N+I  +   TF  L +L +
Sbjct:   348 PDAFQGLKSLTSLVLYGNKITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNL 407

Query:   878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926
             L L  N+L++           ++ ++L  NPF C C  L+ L  ++ DN
Sbjct:   408 LSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCH-LKWLADYLQDN 455

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0005615 "extracellular space" evidence=IDA

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0048495 "Roundabout binding" evidence=IPI

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0035385 "Roundabout signaling pathway" evidence=IMP

UNIPROTKB|J3KNP3 SLIT3 "Slit homolog 3 protein" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 96/409 (23%), Positives = 174/409 (42%)

Query:   533 LNLSENHLVWF---DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589
             L+L  N++      D+A +  NL+ L +  N +S +      +D   ++ L  + N++  
Sbjct:    66 LDLDRNNITRITKMDFAGLK-NLRVLHLEDNQVSVIERG-AFQDLKQLERLRLNKNKLQV 123

Query:   590 ISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR-LKPV 646
             + EL   ++ ++  L ++ N I+ +    F   +++  + +  N I+ ++  A R L+ +
Sbjct:   124 LPELLFQSTPKLTRLDLSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDL 183

Query:   647 P----QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQY-PKIMDLDNVVCKMTY 701
                   N  +    +    F+    +  L + +N+        +    +     V + T 
Sbjct:   184 EILTLNNNNISRILV--TSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTVGQFTL 241

Query:   702 SRGSTHLPASEAAPSQ---YLCPYDIHCFALCHCCEFDACDCE-MTCPKNCSCFHDQNWN 757
                  HL     A  Q   Y+CP         H  E  +C+   ++CP  C+C      +
Sbjct:   242 CMAPVHLRGFNVADVQKKEYVCPAP-------HS-EPPSCNANSISCPSPCTC------S 287

Query:   758 TNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
              N+VDC  + +  +P  +P     + L+ N+ K IP   F   K +  + ++ +QI  I 
Sbjct:   288 NNIVDCRGKGLMEIPANLPEGIVEIRLEQNSIKAIPAGAFTQYKKLKRIDISKNQISDIA 347

Query:   818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
                F GL SL  L L  N IT      FD L  L  L L  N+I  +   TF  L +L +
Sbjct:   348 PDAFQGLKSLTSLVLYGNKITEIVKGLFDGLVSLQLLLLNANKINCLRVNTFQDLQNLNL 407

Query:   878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926
             L L  N+L++           ++ ++L  NPF C C  L+ L  ++ DN
Sbjct:   408 LSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCH-LKWLADYLQDN 455

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	1344
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-17
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-15
pfam01582	135	pfam01582, TIR, TIR domain	4e-15
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	3e-13
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	8e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	9e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05
smart00013	33	smart00013, LRRNT, Leucine rich repeat N-terminal	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.001
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.1 bits (221), Expect = 1e-17
 Identities = 128/456 (28%), Positives = 195/456 (42%), Gaps = 81/456 (17%)

Query: 66  SFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKK---------L 115
           S  N+ SLE L +++ +LV ++P ++   +++LK + +   NL  +   +         L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241

Query: 116 DLV--------PGSLDGLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDID 166
           DLV        P SL  L+ LQ L +  + +   I   +F SL  + +L+LS NS+    
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL---- 296

Query: 167 TLGFAVRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN 225
                         SGE  E    + +L IL L  N   T      +T   RLQ L L +
Sbjct: 297 --------------SGEIPELVIQLQNLEILHLFSNNF-TGKIPVALTSLPRLQVLQLWS 341

Query: 226 NEISQIAPNAFVALSSLRILNISSNHLVS-LPEGLFSSCRDISEIYAQKNSL---VELSR 281
           N+ S   P      ++L +L++S+N+L   +PEGL SS   + ++    NSL   +  S 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSL 400

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RIDAKTFKDLVFL 340
           G    L ++    L  N  S     E T + L+    L++SNN L  RI+++ + D+  L
Sbjct: 401 GACRSLRRV---RLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKW-DMPSL 454

Query: 341 QRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           Q L L RN   G + D                            G   L  L LS N   
Sbjct: 455 QMLSLARNKFFGGLPD--------------------------SFGSKRLENLDLSRNQFS 488

Query: 400 NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
               +   + S L +L LS N +  EIP  LS    L +LDL  NQ+S     SF  +  
Sbjct: 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPV 548

Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
           L+ L L  N +       L  + SL  +N+S N +H
Sbjct: 549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 85.8 bits (212), Expect = 2e-17
 Identities = 88/327 (26%), Positives = 140/327 (42%), Gaps = 16/327 (4%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
            L L  + L+R+ +        +  LD   N          L+L  L ++ L+ NR+   
Sbjct: 58  TLLLLPSSLSRLLSLDLLSPSGISSLDGSENL---------LNLLPLPSLDLNLNRLRSN 108

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKT 437
            + L   L  L+ L L NN + +I        S LKELDLS N I  +PS L  LP LK 
Sbjct: 109 ISELLE-LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
           LDL  N +S +      NL  L +L L  N I +L   +   L +LE L+LS N I ++ 
Sbjct: 168 LDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPEI-ELLSALEELDLSNNSIIEL- 224

Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
           + +    K L+ + L +N L D+      L+ L  L+LS N +          NL+ LD+
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTF 617
            GN   SL+N   +   L +      +  +   +     NS+ +     +  ++  P   
Sbjct: 285 SGN---SLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Query: 618 FDKSNLARVDIYANDITKLDLTALRLK 644
               +L  +    N + + +L    +K
Sbjct: 342 SILESLNNLWTLDNALDESNLNRYIVK 368

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 6e-17
 Identities = 128/506 (25%), Positives = 206/506 (40%), Gaps = 79/506 (15%)

Query: 124 GLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
            L  +Q +N+S++ +   I DD+F + ++++ LNLS N+       G             
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI----------- 139

Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
                    +L  LDLS+N L +    + I  F  L+ L L  N +    PN+   L+SL
Sbjct: 140 --------PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
             L ++SN LV          + +  IY   N+L          L  L  LDL  N+L+ 
Sbjct: 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250

Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
                ++   L  L  L L  N+L+     +   L  L  LDL +NS+        + L 
Sbjct: 251 P--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTL----SNNLLVNIDSKAFKNCSALKELDLS 418
           NL  ++L  N   + T  +   L  L +L +    SN     I     K+ + L  LDLS
Sbjct: 309 NLEILHLFSN---NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH-NNLTVLDLS 364

Query: 419 SNAIV-------------------------EIPSALSELPFLKTLDLGENQISKIENGSF 453
           +N +                          EIP +L     L+ + L +N  S      F
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424

Query: 454 KNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
             L  +  L + +NN+ G ++S   +++PSL++L+L++NK     +     +KRL  + L
Sbjct: 425 TKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNKFFG-GLPDSFGSKRLENLDL 482

Query: 513 DSN-FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSL 565
             N F   +      L++L+ L LSEN L       +P        L  LD+  N +S  
Sbjct: 483 SRNQFSGAVPRKLGSLSELMQLKLSENKLS----GEIPDELSSCKKLVSLDLSHNQLSG- 537

Query: 566 NNYYEIKDGLS----IKNLDASHNRI 587
               +I    S    +  LD S N++
Sbjct: 538 ----QIPASFSEMPVLSQLDLSQNQL 559

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 79.7 bits (197), Expect = 1e-15
 Identities = 72/250 (28%), Positives = 100/250 (40%), Gaps = 44/250 (17%)

Query: 283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIR----LIILNLSNNELTRIDAKT---- 333
           L  KL  L VL L  N L          +   +R    L  L LS NE  RI        
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAA---KALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74

Query: 334 --FKDLVFLQRLDLRNNSIGYIEDN-----AFLSLYNLHTIYLSENRI-HHITAHLFNGL 385
                   LQ LDL +N++G   D      + L   +L  + L+ N +       L  GL
Sbjct: 75  QGLTKGCGLQELDLSDNALG--PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL 132

Query: 386 ----YVLSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIVE--IPS---ALSEL 432
                 L KL L  N L        +KA +    LKEL+L++N I +  I +    L   
Sbjct: 133 KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKAN 192

Query: 433 PFLKTLDLGENQI----SKIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSL 483
             L+ LDL  N +    +     +  +L+ L  L L DNN+ +     L+S +L    SL
Sbjct: 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 484 EVLNLSKNKI 493
             L+LS N I
Sbjct: 253 LTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 43/165 (26%)

Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
              D +  +  ++ ELE      +LC+  RD                          ++  
Sbjct: 8    KDDRDTFVSHLLKELEEK--GIKLCIDDRDE--------------------LPGESIL-- 43

Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
                         + L EA E SRR I++ + N+  +EW   +    +  AL     K++
Sbjct: 44   -------------ENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALEGGGKKVI 90

Query: 1155 LVEENIVPEAESDIELKPYLKSCMK-IRW-----GEKRFWERLRY 1193
            L     V  ++   +   + K+ +K ++W      + RFW++  Y
Sbjct: 91   LPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 31/165 (18%), Positives = 59/165 (35%), Gaps = 43/165 (26%)

Query: 1039 EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKN 1098
            E V    ++ L      Y LC+   D       L+       + EA E SR  I+VL+ N
Sbjct: 12   EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE------EIDEAIEKSRIAIVVLSPN 65

Query: 1099 FLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEE 1158
            + ++EW     L E                           +A+  AL     +++ +  
Sbjct: 66   YAESEWC----LDE-------------------------LVAALENALEEGGLRVIPIFY 96

Query: 1159 NIVPEAESDIELKPYLKSCMKIRWGE------KRFWERLRYAMPT 1197
             ++P      +     +   K  + +      ++FW++  YA+P+
Sbjct: 97   EVIPSDV--RKQPGKFRKVFKKNYLKWPEDEKEQFWKKALYAVPS 139

Length = 140

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 26/59 (44%), Positives = 32/59 (54%)

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
           L+ LDL NN +  I D AF  L NL  + LS N +  I+   F+GL  L  L LS N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 68.7 bits (168), Expect = 2e-11
 Identities = 73/247 (29%), Positives = 115/247 (46%), Gaps = 36/247 (14%)

Query: 408 NCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLV 465
           N S +  +DLS   I  +I SA+  LP+++T++L  NQ+S  I +  F     L  L L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 466 DNNI-GNLSSGMLYELPSLEVLNLSKN----KIHQIEIGTFEKNKRLAAIRLDSNFLT-D 519
           +NN  G++  G    +P+LE L+LS N    +I   +IG+F     L  + L  N L   
Sbjct: 127 NNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPN-DIGSFS---SLKVLDLGGNVLVGK 179

Query: 520 INGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLNNYYEIKD 573
           I    T L  L +L L+ N LV      +P       +LKW+ +  N +S     YEI  
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLV----GQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGG 234

Query: 574 GLSIKNLDASHNRILEISELSIPNS------VEVLFINNNLIKSVKPHTFFDKSNLARVD 627
             S+ +LD  +N +       IP+S      ++ LF+  N +    P + F    L  +D
Sbjct: 235 LTSLNHLDLVYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290

Query: 628 IYANDIT 634
           +  N ++
Sbjct: 291 LSDNSLS 297

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 65.6 bits (160), Expect = 2e-10
 Identities = 90/325 (27%), Positives = 137/325 (42%), Gaps = 14/325 (4%)

Query: 201 NKLRTLGDYSGI--TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-SLPE 257
           N    +  + GI      R+ ++ L    IS    +A   L  ++ +N+S+N L   +P+
Sbjct: 52  NSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPD 111

Query: 258 GLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLI-R 315
            +F++   +  +    N+    + RG    LE    LDLS+N LS    ++   IG    
Sbjct: 112 DIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE---TLDLSNNMLSGEIPND---IGSFSS 165

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
           L +L+L  N L      +  +L  L+ L L +N +          + +L  IYL  N + 
Sbjct: 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225

Query: 376 HITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELP 433
               +   GL  L+ L L  NNL   I S +  N   L+ L L  N +   IP ++  L 
Sbjct: 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284

Query: 434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
            L +LDL +N +S         LQ L  L L  NN        L  LP L+VL L  NK 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 494 HQIEIGTFEKNKRLAAIRLDSNFLT 518
                    K+  L  + L +N LT
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 2e-10
 Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 12/338 (3%)

Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
           I+ +   S  + V  +   +   + +   +    +   ++   S    S      +    
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
           L +  L  N  R   + S + +   L +L L+NN I+ I P   +  S+L+ L++S N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
            SLP  L  +  ++  +    N L +L + L   L  L  LDLS N +S    +      
Sbjct: 153 ESLPSPL-RNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEIEL--- 207

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
           L  L  L+LSNN +  +   +  +L  L  L+L NN +  + ++   +L NL T+ LS N
Sbjct: 208 LSALEELDLSNNSIIELL-SSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNN 265

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
           +I  I++     L  L +L LS N L N           L    L +  +      L   
Sbjct: 266 QISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLL--ELLLNLLLTLKALELKLN 321

Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
             L   ++  N  +     +   L+ L +L  +DN + 
Sbjct: 322 SILLNNNILSNGETSSPE-ALSILESLNNLWTLDNALD 358

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
           NL ++ LS NR+  I    F GL  L  L LS N L +I  +AF    +L+ LDLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 3e-09
 Identities = 74/323 (22%), Positives = 117/323 (36%), Gaps = 65/323 (20%)

Query: 91  FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
             G  NL  L             + ++    L  L  L  L++ ++NI  I   +    +
Sbjct: 83  LDGSENLLNLLPLPSLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKS 140

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
           N++ L+LS N I  + +    +                   +L+ LDLS N L  L    
Sbjct: 141 NLKELDLSDNKIESLPSPLRNL------------------PNLKNLDLSFNDLSDLPKLL 182

Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
                  L NL L  N+IS + P   + LS+L  L++S+N ++ L   L           
Sbjct: 183 SNLS--NLNNLDLSGNKISDLPPEIEL-LSALEELDLSNNSIIELLSSLS---------- 229

Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI-ILNLSNNELTRI 329
                           L+ L  L+LS+N L     D    IG +  +  L+LSNN+++ I
Sbjct: 230 ---------------NLKNLSGLELSNNKL----EDLPESIGNLSNLETLDLSNNQISSI 270

Query: 330 DAKTFKDLVFLQRLDLRNNSI----------GYIEDNAFLSLYNLHTIYLSENRIHHITA 379
            +     L  L+ LDL  NS+            + +     L  L  + L  N I     
Sbjct: 271 SS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Query: 380 HLFNGLYVLSKLTLSNNLLVNID 402
            L NG     +       L N+ 
Sbjct: 329 ILSNGETSSPEALSILESLNNLW 351

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI 350
            LDLS+N L+   I +  F GL  L +L+LS N LT I  + F  L  L+ LDL  N++
Sbjct: 4   SLDLSNNRLT--VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query: 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI 374
            L  L+LSNN LT I    FK L  L+ LDL  N++  I   AF  L +L ++ LS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.5 bits (127), Expect = 9e-09
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
           LK+LDL  N+++ I +G+FK L  L  L L  NN+ ++S      LPSL  L+LS N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQI 445
           L  L LSNN L  I   AFK    LK LDLS N +  I   A S LP L++LDL  N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 33/60 (55%)

Query: 217 RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL 276
            L++L L NN ++ I   AF  L +L++L++S N+L S+    FS    +  +    N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 412 LKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
           LK LDLS+N +  IP  A   LP LK LDL  N ++ I   +F  L  L  L L  NN+
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
           +L+ L L NN +T      F  L  L  L L  N +  I+   F+ L SL+ L L GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
           SL ++N+++ VI +  F GL +L+VL L  N +T      F  L  L  L L  N +
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.9 bits (120), Expect = 9e-08
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
           L+ LDLS+N+L  + D +       L+ L L  N ++ I+P AF  L SLR L++S N+L
Sbjct: 2   LKSLDLSNNRLTVIPDGA-FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
           +L+ L++S+N L  +P+G F    ++  +    N+L  +S   F  L  L  LDLS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 3e-07
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
            L  L L +N +  +  G    LP+L+VL+LS N +  I    F     L ++ L  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 266 ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE 325
           +  +    N L  +  G F  L  L VLDLS N+L+   I    F GL  L  L+LS N 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT--SISPEAFSGLPSLRSLDLSGNN 59

Query: 326 L 326
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 49.1 bits (118), Expect = 8e-07
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
           I E  F G   L  + L ++ LT I +  F +   L  + +  +S+  I + AF +  +L
Sbjct: 25  IGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITI-PSSLTSIGEYAFSNCSSL 82

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
            +I +  N +  I ++ F+    L  +T+ +++   I   AF NCS+LK
Sbjct: 83  TSITIPSN-LTTIGSYAFSNCS-LKSITIPSSVT-TIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.4 bits (126), Expect = 9e-07
 Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 48/257 (18%)

Query: 192 DLRILDLSHNKLRTLGDY-----SGITKFRRLQNLHLENNEISQIAPNAFVAL---SSLR 243
            L+ L LS N+   +         G+TK   LQ L L +N +         +L   SSL+
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQ 111

Query: 244 ILNISSN-----HLVSLPEGLFSSCRDISEIYAQKNSL-VELSR---GLFHKLEQLLVLD 294
            L +++N      L  L +GL      + ++   +N L                 L  L+
Sbjct: 112 ELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171

Query: 295 LSSNHLSSNHIDETTFIGL---IRLIILNLSNNELTRIDAK----TFKDLVFLQRLDLRN 347
           L++N +    I      GL     L +L+L+NN LT   A     T   L  L+ L+L +
Sbjct: 172 LANNGIGDAGI-RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF- 406
           N++             L +  LS N               L  L+LS N + +  +K   
Sbjct: 231 NNLTD------AGAAALASALLSPNI-------------SLLTLSLSCNDITDDGAKDLA 271

Query: 407 ---KNCSALKELDLSSN 420
                  +L ELDL  N
Sbjct: 272 EVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             + L  N    IP+  F G  N+  L ++ + +  I  + F+GL SL+ L L  N +
Sbjct: 3   KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 31/91 (34%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
           +L+ L +SN +L  +P   F GL N                               L+VL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPN-------------------------------LKVL 29

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
           ++S +N+ SIS + F  L ++++L+LS N++
Sbjct: 30  DLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
            I D AF +  +L +I +  + +  I  + F+G   L  +TL ++L  +I S AF NCS+
Sbjct: 2   SIGDYAFYNC-SLTSITIPSS-VTSIGEYAFSGCTSLKSITLPSSL-TSIGSYAFYNCSS 58

Query: 412 LKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKN 455
           L  + + S+ +  I   A S    L ++ +  N ++ I + +F N
Sbjct: 59  LTSITIPSS-LTSIGEYAFSNCSSLTSITIPSN-LTTIGSYAFSN 101

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
            L  L L  NR+  I +G F  L +L+VL L GN L S      +    LR + L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
           +L+ L+LS N++  I  G F+    L  + L  N LT I+   F+ L  L  L+LS N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|214470 smart00013, LRRNT, Leucine rich repeat N-terminal domain

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATH 781
           CP  C+C          VDCS + ++ VP  +P D T 
Sbjct: 2   CPAPCNCSG------TAVDCSGRGLTEVPLDLPPDTTL 33

Length = 33

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 19/77 (24%)

Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
           L+ L++S++ +  I D  F  L N++ L+LS N++  I    F+                
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS---------------- 45

Query: 188 SGGMD-LRILDLSHNKL 203
             G+  LR LDLS N L
Sbjct: 46  --GLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
           L+ LDLS+N I ++P  LS LP L+TLDL  N+I+ +  
Sbjct: 3   LETLDLSNNQITDLP-PLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 43/210 (20%), Positives = 73/210 (34%), Gaps = 56/210 (26%)

Query: 53  DATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVD-VFSGLR----NLKRLTINTRNL 107
           D  +  D     +S     SL+ELK++N  L +  +  +  GL+     L++L +    L
Sbjct: 90  DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL 149

Query: 108 QWDKS-------------KKLDLVPGSL--DGLR----------ELQVLNISSSNIKSIS 142
           +                 K+L+L    +   G+R           L+VL+++++ +    
Sbjct: 150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209

Query: 143 DDVFC----SLANIQTLNLSRNSIRDIDTLGFA---------VRRASAESNSGEKIECSG 189
                    SL +++ LNL  N++ D      A         +   S   N    I   G
Sbjct: 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN---DITDDG 266

Query: 190 GMD----------LRILDLSHNKLRTLGDY 209
             D          L  LDL  NK    G  
Sbjct: 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
           L+ L++S++ I  +      +L N++TL+LS N I D+  L
Sbjct: 3   LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI 102
           + I   +F+ + +L+ L +S   L  +  + FSGL +L+ L +
Sbjct: 13  TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDL 55

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1344
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
KOG0472|consensus	565		99.97
KOG0472|consensus	565		99.97
KOG0618|consensus	1081		99.96
KOG0618|consensus	1081		99.96
KOG0444|consensus	1255		99.94
KOG4237|consensus	498		99.94
KOG0444|consensus	1255		99.94
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.8
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG0617|consensus	264		99.37
KOG0617|consensus	264		99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG1909|consensus	382		99.02
KOG3207|consensus	505		98.94
KOG1259|consensus	490		98.91
KOG3207|consensus	505		98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.85
KOG0531|consensus	414		98.84
KOG1909|consensus	382		98.84
PLN03150	623	hypothetical protein; Provisional	98.84
KOG0531|consensus	414		98.83
KOG0532|consensus	722		98.8
KOG1259|consensus	490		98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.76
KOG0532|consensus	722		98.7
KOG4658|consensus	889		98.68
KOG4658|consensus	889		98.51
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.16
KOG2120|consensus	419		98.15
PLN03150	623	hypothetical protein; Provisional	98.12
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	98.1
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.09
KOG1859|consensus	1096		98.09
KOG1644|consensus	233		98.06
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.01
KOG1859|consensus	1096		97.97
PLN03194	187	putative disease resistance protein; Provisional	97.97
PRK15386	426	type III secretion protein GogB; Provisional	97.91
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.86
KOG1644|consensus	233		97.82
KOG2120|consensus	419		97.81
KOG4579|consensus	177		97.81
KOG2982|consensus	418		97.8
KOG2982|consensus	418		97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.68
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.66
KOG4579|consensus	177		97.61
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.54
KOG4341|consensus	483		97.48
PRK15386	426	type III secretion protein GogB; Provisional	97.41
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.38
KOG4341|consensus	483		97.32
KOG3665|consensus	699		97.29
KOG2123|consensus	388		97.09
KOG3665|consensus	699		97.03
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	96.58
KOG2123|consensus	388		96.35
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.08
KOG2739|consensus	260		95.98
KOG2739|consensus	260		95.97
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.96
KOG1947|consensus	482		95.93
KOG1947|consensus	482		95.3
smart00255	140	TIR Toll - interleukin 1 - resistance.	95.23
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	94.57
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.06
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	92.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.65
KOG3678|consensus	832		92.0
smart00370	26	LRR Leucine-rich repeats, outliers.	91.45
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.45
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.57
smart00370	26	LRR Leucine-rich repeats, outliers.	89.57
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.07
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.87
KOG4308|consensus	478		88.54
KOG4308|consensus	478		86.87
KOG0473|consensus	326		86.22
KOG3864|consensus	221		85.69
PLN03194	187	putative disease resistance protein; Provisional	83.35
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	83.34
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	83.09
KOG0473|consensus	326		81.73

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-46  Score=499.53  Aligned_cols=319  Identities=28%  Similarity=0.301  Sum_probs=139.1

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhh-cCCCCccEEEeeCCCCCC-CChhhhcCCCCCcE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF-VALSSLRILNISSNHLVS-LPEGLFSSCRDISE  268 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~  268 (1344)
                      .+++.|+|++|.+++..+. .+..+++|+.|+|++|.+.+..|..+ .++++|++|+|++|.+.. +|.           
T Consensus        69 ~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-----------  136 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-----------  136 (968)
T ss_pred             CcEEEEEecCCCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----------
Confidence            4455555555555443332 44555555555555555543333322 245555555555554432 221           


Q ss_pred             EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377        269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN  348 (1344)
Q Consensus       269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  348 (1344)
                                      ..+++|++|+|++|.+.+  ..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|
T Consensus       137 ----------------~~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        137 ----------------GSIPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             ----------------cccCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence                            223444444444444432  11233344444444444444444333334444444444444444


Q ss_pred             CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccch
Q psy16377        349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPS  427 (1344)
Q Consensus       349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~  427 (1344)
                      .+....+..+..+++|+.|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|.++++|+.|++++|.+. .+|.
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            443333333444444444444444444444444444444444444444444444444444444444444444443 3344


Q ss_pred             hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCcc
Q psy16377        428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL  507 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  507 (1344)
                      .+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L  358 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL  358 (968)
T ss_pred             hHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence            44444444444444444444444444444444444444444432222234444444444444444443333334444444


Q ss_pred             ceEeccccCCC-ChhhHhhcCCCCcEEEcCCCC
Q psy16377        508 AAIRLDSNFLT-DINGVFTYLAQLLWLNLSENH  539 (1344)
Q Consensus       508 ~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~  539 (1344)
                      +.|++++|.++ .+|..+..+++|+.|++++|+
T Consensus       359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~  391 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS  391 (968)
T ss_pred             cEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence            44444444433 123333333444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-45  Score=493.84  Aligned_cols=535  Identities=22%  Similarity=0.272  Sum_probs=349.0

Q ss_pred             cceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCC-ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcC
Q psy16377         44 LITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL  122 (1344)
Q Consensus        44 ~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~-~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~  122 (1344)
                      .++.|+|+.+.+.   +.+ +.+|..+++|+.|+|++|++. .+|...|.++++|++|+|++|++..       .+|.  
T Consensus        70 ~v~~L~L~~~~i~---~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-------~~p~--  136 (968)
T PLN00113         70 RVVSIDLSGKNIS---GKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG-------SIPR--  136 (968)
T ss_pred             cEEEEEecCCCcc---ccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc-------ccCc--
Confidence            4888999998873   344 468899999999999999986 7887777799999999998776642       2342  


Q ss_pred             CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377        123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK  202 (1344)
Q Consensus       123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~  202 (1344)
                      +.+++|++|+|++|.+....+..++++++|++|+|++|.+....+..                 +.++++|++|+|++|.
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-----------------~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-----------------LTNLTSLEFLTLASNQ  199 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-----------------hhhCcCCCeeeccCCC
Confidence            45788999999999888655566888899999999888876432222                 2347788888888888


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh
Q psy16377        203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG  282 (1344)
Q Consensus       203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~  282 (1344)
                      +++..+. .+.++++|+.|+|++|.+.+..|..++++++|++|++++|.+....+..|.++++|++|++++|.+....+.
T Consensus       200 l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        200 LVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             CcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            7754433 678888888888888888877788888888888888888877755555667777888888887777655445


Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCC
Q psy16377        283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY  362 (1344)
Q Consensus       283 ~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~  362 (1344)
                      .+.++++|++|++++|.+.+  ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++
T Consensus       279 ~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~  356 (968)
T PLN00113        279 SIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN  356 (968)
T ss_pred             hHhhccCcCEEECcCCeecc--CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence            55677777777777777665  2345566667777777777776666666666666666666666666544444555666


Q ss_pred             CccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEcc
Q psy16377        363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLG  441 (1344)
Q Consensus       363 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls  441 (1344)
                      +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..++.|+.|+++
T Consensus       357 ~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        357 NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECc
Confidence            6666666666666555555555556666666666655555555555556666666655554 445555555555555555


Q ss_pred             CCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-Ch
Q psy16377        442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DI  520 (1344)
Q Consensus       442 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l  520 (1344)
                      +|.+.+..+..+..+++|+.|++++|.+                        .+..+..+ ..++|+.|++++|.++ .+
T Consensus       437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~------------------------~~~~p~~~-~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        437 NNNLQGRINSRKWDMPSLQMLSLARNKF------------------------FGGLPDSF-GSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             CCcccCccChhhccCCCCcEEECcCcee------------------------eeecCccc-ccccceEEECcCCccCCcc
Confidence            5555555554445555555555555554                        33322222 1244455555555444 23


Q ss_pred             hhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--Cc
Q psy16377        521 NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NS  598 (1344)
Q Consensus       521 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~s  598 (1344)
                      |..+..+++|+.|++++|++..    .+|.                   .+..+++|+.|++++|.+++..+..+.  ++
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~----~~p~-------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  548 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSG----EIPD-------------------ELSSCKKLVSLDLSHNQLSGQIPASFSEMPV  548 (968)
T ss_pred             ChhhhhhhccCEEECcCCccee----eCCh-------------------HHcCccCCCEEECCCCcccccCChhHhCccc
Confidence            4445555555555555555541    1221                   112234555566666655555443333  36


Q ss_pred             ccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccccc
Q psy16377        599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD  665 (1344)
Q Consensus       599 L~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~  665 (1344)
                      |+.|+|++|++.+..|..+.++++|+.+++++|++.+.-+..      .....+....+.|||..|.
T Consensus       549 L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~------~~~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        549 LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST------GAFLAINASAVAGNIDLCG  609 (968)
T ss_pred             CCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc------chhcccChhhhcCCccccC
Confidence            777777777777777777888888888888888887633221      1112344456788998874

>KOG4194|consensus

Probab=100.00  E-value=1e-42  Score=390.72  Aligned_cols=415  Identities=24%  Similarity=0.379  Sum_probs=335.3

Q ss_pred             eeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccC
Q psy16377        388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN  467 (1344)
Q Consensus       388 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  467 (1344)
                      -+.|++++|.+..+....|.++++|+++++..|.++.||........|+.|+|.+|.|+.+..+.++.++.|+.|||+.|
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence            45688888888888888888899999999999999999887677777999999999999888888888899999999999


Q ss_pred             CCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCccccCC
Q psy16377        468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYA  546 (1344)
Q Consensus       468 ~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~  546 (1344)
                      .|+.|+...|..-.++++|+|++|+|+.+..+.|..+.+|..|.|+.|+++.+| ..|..++.|+.|+|..|+|.-..+.
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            998888877877788999999999999998888988889999999999999887 5788888888888888877633221


Q ss_pred             CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccc--cCcccEEEcCCCcCCccCCCCCCCCCCcc
Q psy16377        547 MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSI--PNSVEVLFINNNLIKSVKPHTFFDKSNLA  624 (1344)
Q Consensus       547 ~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~--~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~  624 (1344)
                                             .++.+++|+.|.+..|.|..+....+  ...+++|+|..|++.....+.+.+++.|+
T Consensus       240 -----------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~  296 (873)
T KOG4194|consen  240 -----------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLE  296 (873)
T ss_pred             -----------------------hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhh
Confidence                                   12334455555555555555443332  24566777777777777777778888888


Q ss_pred             EEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCC
Q psy16377        625 RVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRG  704 (1344)
Q Consensus       625 ~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~  704 (1344)
                      .|++++|.|..+...+..                                                              
T Consensus       297 ~L~lS~NaI~rih~d~Ws--------------------------------------------------------------  314 (873)
T KOG4194|consen  297 QLDLSYNAIQRIHIDSWS--------------------------------------------------------------  314 (873)
T ss_pred             hhccchhhhheeecchhh--------------------------------------------------------------
Confidence            888888887765432110                                                              


Q ss_pred             CccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEE
Q psy16377        705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYL  784 (1344)
Q Consensus       705 ~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L  784 (1344)
                                                                                            +-..+++|+|
T Consensus       315 ----------------------------------------------------------------------ftqkL~~LdL  324 (873)
T KOG4194|consen  315 ----------------------------------------------------------------------FTQKLKELDL  324 (873)
T ss_pred             ----------------------------------------------------------------------hcccceeEec
Confidence                                                                                  0023677888


Q ss_pred             eCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccC---cccccCccccceeecccccc
Q psy16377        785 DGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY---GYEFDNLEKLSELYLQENRI  861 (1344)
Q Consensus       785 ~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~l  861 (1344)
                      +.|+|+.+++..|..++.|+.|.|++|+|..+..++|.++.+|++|||++|.|+...   ...|.+|++|+.|.|.+|+|
T Consensus       325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            999999999999999999999999999999999999999999999999999998643   34589999999999999999


Q ss_pred             ccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCC
Q psy16377        862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID  941 (1344)
Q Consensus       862 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~  941 (1344)
                      ++|+..+|.++++|+.|+|.+|.|.+|-+..|..+ .|++|.+..-.|-|||+ +.||.+|+.++.-+  ......|.+|
T Consensus       405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq-l~Wl~qWl~~~~lq--~sv~a~CayP  480 (873)
T KOG4194|consen  405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ-LKWLAQWLYRRKLQ--SSVIAKCAYP  480 (873)
T ss_pred             eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc-HHHHHHHHHhcccc--cceeeeccCC
Confidence            99999999999999999999999999999999988 89999999999999999 89999999776433  4566899999


Q ss_pred             CCCCCccccc--cCCcccccCcc
Q psy16377        942 ESSPPIRKEI--DLNSTTCTEYY  962 (1344)
Q Consensus       942 ~~~~~~~~~~--~~~~~~C~~~~  962 (1344)
                      +...++ ..+  +.....|.+..
T Consensus       481 e~Lad~-~i~svd~~~lvC~Dsp  502 (873)
T KOG4194|consen  481 EPLADQ-SIVSVDTANLVCDDSP  502 (873)
T ss_pred             cccccc-eeEeechhhceecCCC
Confidence            875543 333  33446798653

>KOG4194|consensus

Probab=100.00  E-value=8e-40  Score=367.56  Aligned_cols=399  Identities=28%  Similarity=0.418  Sum_probs=203.2

Q ss_pred             CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      .||.-|.|..       +.++|..|.|...+...+..+-+..++.|++++|++    +.+....|.++++|++++|..|.
T Consensus        45 ~cpa~c~c~~-------~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl----~~id~~~f~nl~nLq~v~l~~N~  113 (873)
T KOG4194|consen   45 ECPATCPCNT-------RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKL----SHIDFEFFYNLPNLQEVNLNKNE  113 (873)
T ss_pred             cCCCcCCCCc-------eeeecCccccccccccccCCcCccceeeeecccccc----ccCcHHHHhcCCcceeeeeccch
Confidence            4555555531       356677777766544444433334455666666665    34555556666666666666666


Q ss_pred             CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377         83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI  162 (1344)
Q Consensus        83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l  162 (1344)
                      ++.||. ......+|+.|+|..|-+.       ++-.+.+..++.|++||||.|.|+.++...|..-.++++|+|++|+|
T Consensus       114 Lt~IP~-f~~~sghl~~L~L~~N~I~-------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~I  185 (873)
T KOG4194|consen  114 LTRIPR-FGHESGHLEKLDLRHNLIS-------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRI  185 (873)
T ss_pred             hhhccc-ccccccceeEEeeeccccc-------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccc
Confidence            666652 1122233555555433322       12223344444555555555555555544444444555555555555


Q ss_pred             CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377        163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL  242 (1344)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  242 (1344)
                      +++....|.                 ++.+|..|.|+.|.++.+|.. .|.++++|+.|+|..|.|....--.|.+|++|
T Consensus       186 t~l~~~~F~-----------------~lnsL~tlkLsrNrittLp~r-~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl  247 (873)
T KOG4194|consen  186 TTLETGHFD-----------------SLNSLLTLKLSRNRITTLPQR-SFKRLPKLESLDLNRNRIRIVEGLTFQGLPSL  247 (873)
T ss_pred             ccccccccc-----------------ccchheeeecccCcccccCHH-HhhhcchhhhhhccccceeeehhhhhcCchhh
Confidence            554444442                 133455555555555555544 44455555555555555444433344555555


Q ss_pred             cEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEcc
Q psy16377        243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS  322 (1344)
Q Consensus       243 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls  322 (1344)
                      +.|.|..|.+..+..++|..+.++++|+|..|++..+..+++.++++|+.|+|++|.                       
T Consensus       248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-----------------------  304 (873)
T KOG4194|consen  248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-----------------------  304 (873)
T ss_pred             hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-----------------------
Confidence            555555555555555555555555555555555554444444444455555555554                       


Q ss_pred             CCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCC-
Q psy16377        323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI-  401 (1344)
Q Consensus       323 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-  401 (1344)
                         |..+.......+++|++|+|+.|.++.++++.|..+..|++|.|+.|.+..+....|.++++|+.|+|++|.++.. 
T Consensus       305 ---I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  305 ---IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             ---hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence               4444444444444555555555555544444444445555555555544444444444444444444444443322 


Q ss_pred             --ChhhhcCCCCCcEEEccCCCCCccc-hhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcc
Q psy16377        402 --DSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV  465 (1344)
Q Consensus       402 --~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  465 (1344)
                        ....|.++++|+.|++.+|++..|| .+|.++..|+.|||.+|.|..+.+.+|..+ .|+.|.+.
T Consensus       382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence              1234555666666666666666655 355666666666666666666666666655 55555443

>KOG4237|consensus

Probab=100.00  E-value=5.8e-37  Score=331.76  Aligned_cols=442  Identities=26%  Similarity=0.373  Sum_probs=314.6

Q ss_pred             EEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccC-C
Q psy16377        342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS-N  420 (1344)
Q Consensus       342 ~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n  420 (1344)
                      .++-++-+++++|..   -.+....++|..|+++.+++..|+.+++|+.|+|++|.|+.|.|++|.++.+|..|-+.+ |
T Consensus        50 ~VdCr~~GL~eVP~~---LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPAN---LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCcccCccc---CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            445555566666652   124567788888888888888888888888888888888888888888887777776665 7


Q ss_pred             CCCccch-hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccc
Q psy16377        421 AIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG  499 (1344)
Q Consensus       421 ~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~  499 (1344)
                      +|+.+|. .|.++..|+.|.+.-|++.-+..+.|..+++|..|.+.+|.+..|..+.|..+.+++.+.+..|.+...   
T Consensus       127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---  203 (498)
T KOG4237|consen  127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---  203 (498)
T ss_pred             chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---
Confidence            7777774 567777777777777777777777777788887788888877777777777777777777776652111   


Q ss_pred             cccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE---EcCCCcCCCCCccccccCCCc
Q psy16377        500 TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL---DIHGNYISSLNNYYEIKDGLS  576 (1344)
Q Consensus       500 ~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L---~Ls~n~l~~l~~~~~l~~~~~  576 (1344)
                        -+++.+... +.     ..+..+++.....-..+...++...+...+-.+++.+   ..+.+....+.....++.+++
T Consensus       204 --CnL~wla~~-~a-----~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~  275 (498)
T KOG4237|consen  204 --CNLPWLADD-LA-----MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPN  275 (498)
T ss_pred             --cccchhhhH-Hh-----hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhccc
Confidence              000100000 00     0011112222111111222222222222111111111   112222333333445777889


Q ss_pred             ccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCe
Q psy16377        577 IKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPE  654 (1344)
Q Consensus       577 L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~  654 (1344)
                      |+.|++++|+|+++...++.  ..+++|.|..|+|..+....|.++..|++|+|++|+|+.+.+.+|.     ...++..
T Consensus       276 L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-----~~~~l~~  350 (498)
T KOG4237|consen  276 LRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-----TLFSLST  350 (498)
T ss_pred             ceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-----ccceeee
Confidence            99999999999999887765  5899999999999999999999999999999999999999887774     3457889


Q ss_pred             EEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccc
Q psy16377        655 FYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCE  734 (1344)
Q Consensus       655 l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~  734 (1344)
                      +++-+|||.|+|.+.||..+-...        .   ..++..|..|+.  ++.+|+.++...+|.|.-.          +
T Consensus       351 l~l~~Np~~CnC~l~wl~~Wlr~~--------~---~~~~~~Cq~p~~--~~~~~~~dv~~~~~~c~~~----------e  407 (498)
T KOG4237|consen  351 LNLLSNPFNCNCRLAWLGEWLRKK--------S---VVGNPRCQSPGF--VRQIPISDVAFGDFRCGGP----------E  407 (498)
T ss_pred             eehccCcccCccchHHHHHHHhhC--------C---CCCCCCCCCCch--hccccchhccccccccCCc----------c
Confidence            999999999999999998643221        1   345777887754  5678899999999998722          2


Q ss_pred             ccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccc
Q psy16377        735 FDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE  814 (1344)
Q Consensus       735 ~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~  814 (1344)
                      ...|.-...||..|+|.      ..||.|+++++..+|.+||.++++||+++|.++.++..   .+.+| .+++++|+|.
T Consensus       408 e~~~~~s~~cP~~c~c~------~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~---~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  408 ELGCLTSSPCPPPCTCL------DTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE---LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             ccCCCCCCCCCCCcchh------hhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH---HHhhh-hcccccCcee
Confidence            23456678899999995      45899999999999999999999999999999999986   44566 7788888888


Q ss_pred             ccccchhcCCCccceeecccc
Q psy16377        815 VILNQTFNGLSSLQVLHLENN  835 (1344)
Q Consensus       815 ~i~~~~f~~l~~L~~L~Ls~N  835 (1344)
                      .+.+.+|.++++|.+|-|++|
T Consensus       478 ~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  478 SLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcccccchhhhheeEEecC
Confidence            888888888888888877765

>KOG0472|consensus

Probab=99.97  E-value=1.6e-35  Score=320.21  Aligned_cols=451  Identities=28%  Similarity=0.427  Sum_probs=329.8

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      ..|..|++++|.++.+..  .+.++..|.+|++++|.++.. |.+++.+..++.|+.+.|++..+|+.+ ....+|+.++
T Consensus        45 v~l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhhccH--hhhcccceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhh
Confidence            457777788887777665  367777788888888887776 556777778888888888887777766 5667777888


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      .+.|.+.++++++ +.+..|+.++..+|+++.  . +..+..+.+|..+++.+|.+...++..+. ++.|++||...|.+
T Consensus       121 ~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~s--l-p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  121 CSSNELKELPDSI-GRLLDLEDLDATNNQISS--L-PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL  195 (565)
T ss_pred             ccccceeecCchH-HHHhhhhhhhcccccccc--C-chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence            8888887777765 566677777777777775  2 55666777777788888887777666555 77788888877777


Q ss_pred             cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhc
Q psy16377        351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS  430 (1344)
Q Consensus       351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~  430 (1344)
                      +.+++ .++.+.+|.-|++..|++..++  .|.+++.|++|.++.|++..+..+..+++.+|..||+.+|+++++|..+.
T Consensus       196 ~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c  272 (565)
T KOG0472|consen  196 ETLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC  272 (565)
T ss_pred             hcCCh-hhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH
Confidence            77776 4677777777888888777665  57777888888888887777766666677788888888888888888777


Q ss_pred             CCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCccc----------------------------------
Q psy16377        431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM----------------------------------  476 (1344)
Q Consensus       431 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----------------------------------  476 (1344)
                      -+.+|+.||+++|.|++.++ .++++ .|+.|-+.+|.+..|-...                                  
T Consensus       273 lLrsL~rLDlSNN~is~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~  350 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL  350 (565)
T ss_pred             HhhhhhhhcccCCccccCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence            77788888888887777654 56777 7777777777543221111                                  


Q ss_pred             ----c---cCCCCccEEEcCCCcCcccccccccCCC--ccceEeccccCCCChhhHhhcCCCCc-EEEcCCCCCccccCC
Q psy16377        477 ----L---YELPSLEVLNLSKNKIHQIEIGTFEKNK--RLAAIRLDSNFLTDINGVFTYLAQLL-WLNLSENHLVWFDYA  546 (1344)
Q Consensus       477 ----~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~l~~L~-~L~Ls~n~l~~~~~~  546 (1344)
                          |   ..+.+.+.|++++-+++.++.+.|..-.  -...+++++|++.++|..+..+..+. .+.++.|.+.+.+..
T Consensus       351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~  430 (565)
T KOG0472|consen  351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE  430 (565)
T ss_pred             CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence                1   1134566777777777777776665432  26677888888887776655554443 345555655543211


Q ss_pred             -CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccc-ccCcccEEEcCCCcCCccCCCCCCCCCCcc
Q psy16377        547 -MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS-IPNSVEVLFINNNLIKSVKPHTFFDKSNLA  624 (1344)
Q Consensus       547 -~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~-~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~  624 (1344)
                       ..-+.|..|++++|.+.++|..  +..+..|++||+|.|++..++... .+..++.+-.++|++..+.+..+.++.+|+
T Consensus       431 l~~l~kLt~L~L~NN~Ln~LP~e--~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~  508 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNLLNDLPEE--MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT  508 (565)
T ss_pred             HHhhhcceeeecccchhhhcchh--hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence             1125789999999999999862  334567999999999988766532 335688888899999999999999999999


Q ss_pred             EEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccc
Q psy16377        625 RVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFD  663 (1344)
Q Consensus       625 ~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~  663 (1344)
                      +||+.+|.|..+++.      +..+..+..+.+.||||.
T Consensus       509 tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  509 TLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             eeccCCCchhhCChh------hccccceeEEEecCCccC
Confidence            999999999988763      345678899999999985

>KOG0472|consensus

Probab=99.97  E-value=1.5e-34  Score=312.75  Aligned_cols=455  Identities=26%  Similarity=0.354  Sum_probs=272.5

Q ss_pred             CcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcC
Q psy16377         43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL  122 (1344)
Q Consensus        43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~  122 (1344)
                      ..+..+.+++|++..    +. ..+.++..|.+|++.+|++.++|+ +++.+..++.|+.+.|++        ..+|..+
T Consensus        45 v~l~~lils~N~l~~----l~-~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~l--------s~lp~~i  110 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEV----LR-EDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKL--------SELPEQI  110 (565)
T ss_pred             cchhhhhhccCchhh----cc-HhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchH--------hhccHHH
Confidence            346677777777732    33 356777788888888888887774 577777788888765544        3467777


Q ss_pred             CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377        123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK  202 (1344)
Q Consensus       123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~  202 (1344)
                      +.+.+|..|+.+.|.+..++++ ++.+..|..|+..+|++..++...+.                  +.+|..|++.+|+
T Consensus       111 ~s~~~l~~l~~s~n~~~el~~~-i~~~~~l~dl~~~~N~i~slp~~~~~------------------~~~l~~l~~~~n~  171 (565)
T KOG0472|consen  111 GSLISLVKLDCSSNELKELPDS-IGRLLDLEDLDATNNQISSLPEDMVN------------------LSKLSKLDLEGNK  171 (565)
T ss_pred             hhhhhhhhhhccccceeecCch-HHHHhhhhhhhccccccccCchHHHH------------------HHHHHHhhccccc
Confidence            7778888888888888777765 56677788888888887777664332                  5677777777777


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh
Q psy16377        203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG  282 (1344)
Q Consensus       203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~  282 (1344)
                      ++.+++.  .-+++.|++||...|-+..+ |..++.+.+|+-|+|..|++..+|+  |.+|..|++|+++.|.+..+|..
T Consensus       172 l~~l~~~--~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae  246 (565)
T KOG0472|consen  172 LKALPEN--HIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAE  246 (565)
T ss_pred             hhhCCHH--HHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHH
Confidence            7777764  33377777777777777665 5567777777777777777777774  67777777888877777777777


Q ss_pred             hhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC--
Q psy16377        283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS--  360 (1344)
Q Consensus       283 ~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~--  360 (1344)
                      ...++.+|.+|||..|+++.  + +..+.-+.+|..||+++|.+++.+ ..++++ .|+.|-+.+|.+..+-...+..  
T Consensus       247 ~~~~L~~l~vLDLRdNklke--~-Pde~clLrsL~rLDlSNN~is~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT  321 (565)
T KOG0472|consen  247 HLKHLNSLLVLDLRDNKLKE--V-PDEICLLRSLERLDLSNNDISSLP-YSLGNL-HLKFLALEGNPLRTIRREIISKGT  321 (565)
T ss_pred             Hhcccccceeeecccccccc--C-chHHHHhhhhhhhcccCCccccCC-cccccc-eeeehhhcCCchHHHHHHHHcccH
Confidence            77777777778887777775  2 445556677777778777777764 346676 7777777777665443222111  


Q ss_pred             ---CCCccE----EEccCCcc---c-----ccccccccCCCceeEEEccCCcCCCCChhhhcCCC--CCcEEEccCCCCC
Q psy16377        361 ---LYNLHT----IYLSENRI---H-----HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS--ALKELDLSSNAIV  423 (1344)
Q Consensus       361 ---l~~L~~----L~Ls~n~l---~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~  423 (1344)
                         ++.|+.    =.++...-   +     ..........-+.+.|++++-+++.++.+.|..-.  -....+++.|++.
T Consensus       322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~  401 (565)
T KOG0472|consen  322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC  401 (565)
T ss_pred             HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh
Confidence               011111    00000000   0     00000012223455556666666665555554322  2455566666666


Q ss_pred             ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC-------------
Q psy16377        424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK-------------  490 (1344)
Q Consensus       424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-------------  490 (1344)
                      ++|..+..+..+.+.-+..|+..+..+..++.+++|..|++++|.+.++|.+ +..+..|+.|+++.             
T Consensus       402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq~LnlS~NrFr~lP~~~y~l  480 (565)
T KOG0472|consen  402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQTLNLSFNRFRMLPECLYEL  480 (565)
T ss_pred             hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhhhheecccccccccchHHHhhH
Confidence            5555444443333322222223333333444444444444444444444443 23333444444444             


Q ss_pred             ----------CcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377        491 ----------NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       491 ----------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                                |++..+++..+.++.+|..|||.+|.+..+|..++++++|++|++++|.+.
T Consensus       481 q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  481 QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence                      445455444455555555555555555555555555555555555555543

>KOG0618|consensus

Probab=99.96  E-value=2e-31  Score=316.41  Aligned_cols=480  Identities=25%  Similarity=0.307  Sum_probs=229.6

Q ss_pred             EEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCE
Q psy16377         75 ELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQT  154 (1344)
Q Consensus        75 ~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~  154 (1344)
                      .+|++.+++.-||...+..-. |+.|+++.|.+..  . .++    ...+.-+|+.|||++|.+...|.. ++.+.+|+.
T Consensus         2 ~vd~s~~~l~~ip~~i~~~~~-~~~ln~~~N~~l~--~-pl~----~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~   72 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNNEA-LQILNLRRNSLLS--R-PLE----FVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQ   72 (1081)
T ss_pred             CcccccccCcccchhhccHHH-HHhhhcccccccc--C-chH----HhhheeeeEEeeccccccccCCch-hhhHHHHhh
Confidence            367777777777765554433 7777776443321  0 011    122333477777777777766654 566677777


Q ss_pred             EECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChh
Q psy16377        155 LNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN  234 (1344)
Q Consensus       155 L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~  234 (1344)
                      |+++.|-|..++..                  ++++.+|++|.|..|.+..+|.  .+..+++|+.|+++.|.+..+ |.
T Consensus        73 ln~s~n~i~~vp~s------------------~~~~~~l~~lnL~~n~l~~lP~--~~~~lknl~~LdlS~N~f~~~-Pl  131 (1081)
T KOG0618|consen   73 LNLSRNYIRSVPSS------------------CSNMRNLQYLNLKNNRLQSLPA--SISELKNLQYLDLSFNHFGPI-PL  131 (1081)
T ss_pred             cccchhhHhhCchh------------------hhhhhcchhheeccchhhcCch--hHHhhhcccccccchhccCCC-ch
Confidence            77777766655521                  3446667777777776666665  366666777777777666655 55


Q ss_pred             hhcCCCCccEEEeeCC-CCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCC
Q psy16377        235 AFVALSSLRILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL  313 (1344)
Q Consensus       235 ~~~~l~~L~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l  313 (1344)
                      .+..++.++.+..++| .+..++.     . .++.+++..|.+..--......++.  .|+|.+|.+.     ...+..+
T Consensus       132 ~i~~lt~~~~~~~s~N~~~~~lg~-----~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-----~~dls~~  198 (1081)
T KOG0618|consen  132 VIEVLTAEEELAASNNEKIQRLGQ-----T-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-----VLDLSNL  198 (1081)
T ss_pred             hHHhhhHHHHHhhhcchhhhhhcc-----c-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-----hhhhhhc
Confidence            5666666666666666 1222211     1 1444444444333211111122222  3555555543     1223344


Q ss_pred             CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEc
Q psy16377        314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL  393 (1344)
Q Consensus       314 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  393 (1344)
                      .+|+.|....|.+..+..    ..++|+.|+.+.|.+..+.. .+ -..+|+.++++.|++..++ .++..+.+|+.|..
T Consensus       199 ~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~-~p-~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~  271 (1081)
T KOG0618|consen  199 ANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV-HP-VPLNLQYLDISHNNLSNLP-EWIGACANLEALNA  271 (1081)
T ss_pred             cchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc-cc-ccccceeeecchhhhhcch-HHHHhcccceEecc
Confidence            445555554444443321    12345555555554442221 11 1234445555555544444 44444455555555


Q ss_pred             cCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCC-CcEEEcccCCCCCC
Q psy16377        394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ-LTDLRLVDNNIGNL  472 (1344)
Q Consensus       394 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~l  472 (1344)
                      .+|.+..+ +..+...++|+.|.+..|.+..+|.....++.|++|+|..|.+...+...|.-... |+.|..+.|.+...
T Consensus       272 n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  272 NHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             cchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            55544333 22223334445555555555544444444455555555555444444433333222 44444444444333


Q ss_pred             CcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhh-HhhcCCCCcEEEcCCCCCccccCCC-cCC
Q psy16377        473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSENHLVWFDYAM-VPG  550 (1344)
Q Consensus       473 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~-lp~  550 (1344)
                      +...=...+.|+.|.+.+|++++--...+.+...|+.|+|++|++..+|. .+.++..|++|+||+|+++.++... .-.
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~  430 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG  430 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh
Confidence            32111223444555555555544433444444555555555555554442 3444555555555555554333110 012


Q ss_pred             CccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc-cccccc-CcccEEEcCCCc
Q psy16377        551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIP-NSVEVLFINNNL  608 (1344)
Q Consensus       551 ~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~-~~~~~~-~sL~~L~Ls~N~  608 (1344)
                      .|+.|..++|.+..+|.   +..++.|+.+|+|.|+++.. .+...| +.|++||+++|.
T Consensus       431 ~L~tL~ahsN~l~~fPe---~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLSFPE---LAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhHHHhhcCCceeechh---hhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            44444445555444442   22233455555555544433 122333 344444444444

>KOG0618|consensus

Probab=99.96  E-value=2.4e-31  Score=315.81  Aligned_cols=465  Identities=25%  Similarity=0.313  Sum_probs=357.6

Q ss_pred             CCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCC
Q psy16377         41 PTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG  120 (1344)
Q Consensus        41 ~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~  120 (1344)
                      +.+.+..|++..|-+.    ..|-....+..+|+.|||++|.+...| ..+..+.+|+.|+++.|.+        ...|.
T Consensus        19 ~~~~~~~ln~~~N~~l----~~pl~~~~~~v~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i--------~~vp~   85 (1081)
T KOG0618|consen   19 NNEALQILNLRRNSLL----SRPLEFVEKRVKLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYI--------RSVPS   85 (1081)
T ss_pred             cHHHHHhhhccccccc----cCchHHhhheeeeEEeeccccccccCC-chhhhHHHHhhcccchhhH--------hhCch
Confidence            5566888888888763    233345566667999999999999888 4688889999999976655        44788


Q ss_pred             cCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCC
Q psy16377        121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH  200 (1344)
Q Consensus       121 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  200 (1344)
                      +...+++|++|.|.+|.+..+|.+ +..+.+|+.|+++.|.+..+|..-.                  .++.++.++.++
T Consensus        86 s~~~~~~l~~lnL~~n~l~~lP~~-~~~lknl~~LdlS~N~f~~~Pl~i~------------------~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   86 SCSNMRNLQYLNLKNNRLQSLPAS-ISELKNLQYLDLSFNHFGPIPLVIE------------------VLTAEEELAASN  146 (1081)
T ss_pred             hhhhhhcchhheeccchhhcCchh-HHhhhcccccccchhccCCCchhHH------------------hhhHHHHHhhhc
Confidence            889999999999999999888876 7889999999999999887776433                  267788888998


Q ss_pred             C-CCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccccc
Q psy16377        201 N-KLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL  279 (1344)
Q Consensus       201 n-~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l  279 (1344)
                      | ++..++.      .. ++.+++..|.+.+..+..+..++.  .|+|.+|.+..+   ....+.+|+.|....|++..+
T Consensus       147 N~~~~~lg~------~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l  214 (1081)
T KOG0618|consen  147 NEKIQRLGQ------TS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSEL  214 (1081)
T ss_pred             chhhhhhcc------cc-chhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceE
Confidence            8 3333433      22 888888888888877777766665  699999988732   246788899999888888776


Q ss_pred             ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc
Q psy16377        280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL  359 (1344)
Q Consensus       280 ~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~  359 (1344)
                      .    -.-++|+.|+.++|.+..  .  ..-.--.+|+.++++.|.++.++ ..+..|.+|+.|+..+|.+..++.. +.
T Consensus       215 ~----~~g~~l~~L~a~~n~l~~--~--~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~r-i~  284 (1081)
T KOG0618|consen  215 E----ISGPSLTALYADHNPLTT--L--DVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLR-IS  284 (1081)
T ss_pred             E----ecCcchheeeeccCccee--e--ccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHH-Hh
Confidence            5    345789999999998763  1  11122357899999999998887 7888899999999999999877764 44


Q ss_pred             CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCC-CcEEEccCCCCCccchhh-cCCCCccE
Q psy16377        360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA-LKELDLSSNAIVEIPSAL-SELPFLKT  437 (1344)
Q Consensus       360 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~lp~~l-~~l~~L~~  437 (1344)
                      ...+|+.|.+..|.+..+++. ..++++|++|+|..|++...++..|.-... |..|+.+.|.+...|..= ..++.|+.
T Consensus       285 ~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~  363 (1081)
T KOG0618|consen  285 RITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQE  363 (1081)
T ss_pred             hhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHH
Confidence            667888999988888777653 466888999999999888887765555443 778888888887776321 24567888


Q ss_pred             EEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCC
Q psy16377        438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL  517 (1344)
Q Consensus       438 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  517 (1344)
                      |.+.+|.+++.....+.+.+.|+.|+|++|.+..+|...+.+++.|++|+|++|+++.++ .....+..|+.|...+|.+
T Consensus       364 LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  364 LYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             HHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCce
Confidence            888888888876667788888888888888888888888888888888888888888876 5667778888888888888


Q ss_pred             CChhhHhhcCCCCcEEEcCCCCCcccc-CCCcC-CCccEEEcCCCcC
Q psy16377        518 TDINGVFTYLAQLLWLNLSENHLVWFD-YAMVP-GNLKWLDIHGNYI  562 (1344)
Q Consensus       518 ~~l~~~~~~l~~L~~L~Ls~n~l~~~~-~~~lp-~~L~~L~Ls~n~l  562 (1344)
                      ..+| .+..+++|+.+|+|.|+++... ....| ++|+.||+++|.-
T Consensus       443 ~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  443 LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            8888 6777888888888888876542 23445 6777777777753

>KOG0444|consensus

Probab=99.94  E-value=2.5e-29  Score=283.76  Aligned_cols=351  Identities=23%  Similarity=0.356  Sum_probs=227.7

Q ss_pred             CCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEE
Q psy16377        118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILD  197 (1344)
Q Consensus       118 ~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  197 (1344)
                      .|.....+++++.|.|....+..+|.+ ++.|.+|++|.+++|++..+-..                  ++.++.|+.++
T Consensus        24 FP~~v~qMt~~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGE------------------Ls~Lp~LRsv~   84 (1255)
T KOG0444|consen   24 FPHDVEQMTQMTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGE------------------LSDLPRLRSVI   84 (1255)
T ss_pred             CchhHHHhhheeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhh------------------hccchhhHHHh
Confidence            455555566666666666666666554 55666666666666665433211                  23356666666


Q ss_pred             CCCCCCC--CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCc
Q psy16377        198 LSHNKLR--TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS  275 (1344)
Q Consensus       198 Ls~n~l~--~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~  275 (1344)
                      +..|++.  ++|.  .+-.+..|+.|||+.|++.+. |..+..-+++-+|+||+|+|.+||..+|.++..|-.|+|++|.
T Consensus        85 ~R~N~LKnsGiP~--diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr  161 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPT--DIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR  161 (1255)
T ss_pred             hhccccccCCCCc--hhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence            6666554  3554  366677777777777777665 5666667777777777777777777777777777777777777


Q ss_pred             ccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc-cccccccCCCcccEEEecCCCccccc
Q psy16377        276 LVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSIGYIE  354 (1344)
Q Consensus       276 l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~  354 (1344)
                      +..+||.+ ..+..|++|+|++|.+.-  .....+..+++|++|.+++.+-+- -.|..+.++.+|..+|++.|++..++
T Consensus       162 Le~LPPQ~-RRL~~LqtL~Ls~NPL~h--fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP  238 (1255)
T KOG0444|consen  162 LEMLPPQI-RRLSMLQTLKLSNNPLNH--FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP  238 (1255)
T ss_pred             hhhcCHHH-HHHhhhhhhhcCCChhhH--HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence            77777766 677778888888877653  233444555666677777654332 23455677778888888888877776


Q ss_pred             hhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC--ccchhhcCC
Q psy16377        355 DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPSALSEL  432 (1344)
Q Consensus       355 ~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l  432 (1344)
                      + .+.++++|+.|+|++|+++.+... .+...+|++|+++.|+++.+ |.++..++.|+.|.+.+|+++  .||.+++.+
T Consensus       239 e-cly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  239 E-CLYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             H-HHhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            5 455777888888888877765432 23345666777777776655 456666677777777777655  667777777


Q ss_pred             CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc
Q psy16377        433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI  498 (1344)
Q Consensus       433 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~  498 (1344)
                      ..|+.+..++|.+. ..|..+..|..|+.|.|+.|.+-.+|.+ +.-++.|+.|++..|.-...++
T Consensus       316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPea-IHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEA-IHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhh-hhhcCCcceeeccCCcCccCCC
Confidence            77777777666543 3345666667777777777766666554 4556667777776665444333

>KOG4237|consensus

Probab=99.94  E-value=1.4e-28  Score=267.10  Aligned_cols=164  Identities=27%  Similarity=0.404  Sum_probs=138.6

Q ss_pred             CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377          2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC   81 (1344)
Q Consensus         2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~   81 (1344)
                      ..||.-|.|..++    +..|+|+.+.++.+| .++   | +.++.|+|+.|.|    ++||+++|+.+++||.|||+.|
T Consensus        35 ~~CP~pC~Cs~~~----g~~VdCr~~GL~eVP-~~L---P-~~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N  101 (498)
T KOG4237|consen   35 SACPAPCTCSDVE----GGIVDCRGKGLTEVP-ANL---P-PETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKN  101 (498)
T ss_pred             ccCCCCcccCCCC----CceEEccCCCcccCc-ccC---C-CcceEEEeccCCc----ccCChhhccchhhhceeccccc
Confidence            4699999996433    237999999999999 666   4 4588999999999    6799999999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEEccc-ccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC
Q psy16377         82 KLVELPVDVFSGLRNLKRLTINT-RNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN  160 (1344)
Q Consensus        82 ~i~~l~~~~f~~l~~L~~L~Ls~-n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n  160 (1344)
                      +|+.|.+++|.+++.|..|-+.+ |++.       .+....|++|..|+.|.+.-|.+.-+..++|..+++|..|.+..|
T Consensus       102 ~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-------~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn  174 (498)
T KOG4237|consen  102 NISFIAPDAFKGLASLLSLVLYGNNKIT-------DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN  174 (498)
T ss_pred             chhhcChHhhhhhHhhhHHHhhcCCchh-------hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch
Confidence            99999999999999999998876 3332       345567999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377        161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK  202 (1344)
Q Consensus       161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~  202 (1344)
                      .+..+....|.                 ++..++.+.+..|.
T Consensus       175 ~~q~i~~~tf~-----------------~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  175 KIQSICKGTFQ-----------------GLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhhcccccc-----------------chhccchHhhhcCc
Confidence            99888776553                 25666666666664

>KOG0444|consensus

Probab=99.94  E-value=9.1e-29  Score=279.32  Aligned_cols=365  Identities=26%  Similarity=0.359  Sum_probs=231.9

Q ss_pred             ceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCC
Q psy16377         45 ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG  124 (1344)
Q Consensus        45 l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~  124 (1344)
                      ++-.|+++|+.   ++.--+.....++.++-|.|...++..+|. .++.|.+|+.|.++.|++.        .+-..++.
T Consensus         9 VrGvDfsgNDF---sg~~FP~~v~qMt~~~WLkLnrt~L~~vPe-EL~~lqkLEHLs~~HN~L~--------~vhGELs~   76 (1255)
T KOG0444|consen    9 VRGVDFSGNDF---SGDRFPHDVEQMTQMTWLKLNRTKLEQVPE-ELSRLQKLEHLSMAHNQLI--------SVHGELSD   76 (1255)
T ss_pred             eecccccCCcC---CCCcCchhHHHhhheeEEEechhhhhhChH-HHHHHhhhhhhhhhhhhhH--------hhhhhhcc
Confidence            56677777776   333333566777778888888777777774 4777777787777666543        23445666


Q ss_pred             CCCCCEEEccCCCCC--ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377        125 LRELQVLNISSSNIK--SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK  202 (1344)
Q Consensus       125 l~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~  202 (1344)
                      ++.|+.+++..|++.  ++|++.| .+..|..|+|++|+++++|..-                  ..-+++-+|+||+|+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~L------------------E~AKn~iVLNLS~N~  137 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNL------------------EYAKNSIVLNLSYNN  137 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhh------------------hhhcCcEEEEcccCc
Confidence            777777777777665  5666644 5777777777777777665421                  124566777777777


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcc--cccC
Q psy16377        203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL--VELS  280 (1344)
Q Consensus       203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l--~~l~  280 (1344)
                      |..+|.. .|.++..|-.|||++|++..+ |..+..+..|++|+|++|.+....-..+..+++|+.|.+++.+-  ..+|
T Consensus       138 IetIPn~-lfinLtDLLfLDLS~NrLe~L-PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P  215 (1255)
T KOG0444|consen  138 IETIPNS-LFINLTDLLFLDLSNNRLEML-PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP  215 (1255)
T ss_pred             cccCCch-HHHhhHhHhhhccccchhhhc-CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCC
Confidence            7777765 667777777777777777666 34566677777777777765533222233455666666666542  3555


Q ss_pred             hhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377        281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS  360 (1344)
Q Consensus       281 ~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~  360 (1344)
                      ..+ ..+.+|..+|+|.|.+..   -+..+..+.+|+.|+|++|.++.+.. ....-.+|++|+|+.|+++.++. ++..
T Consensus       216 tsl-d~l~NL~dvDlS~N~Lp~---vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-avcK  289 (1255)
T KOG0444|consen  216 TSL-DDLHNLRDVDLSENNLPI---VPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-AVCK  289 (1255)
T ss_pred             Cch-hhhhhhhhccccccCCCc---chHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-HHhh
Confidence            543 566677777777776653   35566666777777777776665532 22333566677777777666665 4556


Q ss_pred             CCCccEEEccCCcccc-cccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEE
Q psy16377        361 LYNLHTIYLSENRIHH-ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLD  439 (1344)
Q Consensus       361 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  439 (1344)
                      ++.|+.|++.+|++.- -+|..++++..|+.+...+|.+.- .|+.+..|..|+.|.|+.|.+..+|+++.-++.|+.||
T Consensus       290 L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLD  368 (1255)
T KOG0444|consen  290 LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLD  368 (1255)
T ss_pred             hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceeechhhhhhcCCcceee
Confidence            6667777776666542 234445666666666666665533 35566666667777777776666666666666666777


Q ss_pred             ccCCCCCccC
Q psy16377        440 LGENQISKIE  449 (1344)
Q Consensus       440 Ls~n~i~~~~  449 (1344)
                      +..|.-...+
T Consensus       369 lreNpnLVMP  378 (1255)
T KOG0444|consen  369 LRENPNLVMP  378 (1255)
T ss_pred             ccCCcCccCC
Confidence            6666543333

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.86  E-value=8.3e-22  Score=199.88  Aligned_cols=124  Identities=33%  Similarity=0.580  Sum_probs=114.5

Q ss_pred             chhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377       1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus      1036 ~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
                      +|++||...|.|.||+..++|++|+++||+.+|..+.                                   +++.++|+
T Consensus         9 ~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~-----------------------------------~~i~~~i~   53 (141)
T PF01582_consen    9 DDREWFVSHLLPELEERPYGYKLCLDERDFLPGESIL-----------------------------------DNIQEAIE   53 (141)
T ss_dssp             HGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHH-----------------------------------HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCCCCeEEEEechhhccccccc-----------------------------------chhhHhhh
Confidence            5899999999999998768999999999999999999                                   99999999


Q ss_pred             hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch--hhHHHHhhhccEEEeCch-------h
Q psy16377       1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD--IELKPYLKSCMKIRWGEK-------R 1186 (1344)
Q Consensus      1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~--~~l~~~l~~~~~l~w~~~-------~ 1186 (1344)
                      +|||+|+|+|++|++++||.+|++.|++.+..+++.++|+|.+.++++....  ..++.+++..+|++|+++       +
T Consensus        54 ~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  133 (141)
T PF01582_consen   54 RSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSW  133 (141)
T ss_dssp             TEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHH
T ss_pred             hceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHH
Confidence            9999999999999999999999999999999999899999999999988877  578889999999999765       6


Q ss_pred             hHHHhHhh
Q psy16377       1187 FWERLRYA 1194 (1344)
Q Consensus      1187 Fw~~l~~~ 1194 (1344)
                      ||++||||
T Consensus       134 fW~~l~~~  141 (141)
T PF01582_consen  134 FWKKLRYH  141 (141)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999986

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>PLN03210 Resistant to P

Probab=99.84  E-value=2.1e-19  Score=241.76  Aligned_cols=321  Identities=20%  Similarity=0.213  Sum_probs=183.5

Q ss_pred             ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCC-CCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCC
Q psy16377         85 ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR-ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIR  163 (1344)
Q Consensus        85 ~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~  163 (1344)
                      .+...+|.++++|+.|.+..+.... .......+|..|..++ +|+.|++.++.+..+|.. | ...+|+.|++.+|.+.
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccc-cccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccc
Confidence            3456678888888888875443211 1111123455566553 588888888888888765 3 4678888888888777


Q ss_pred             CCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC-CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377        164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL  242 (1344)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  242 (1344)
                      .++..                  ...+++|+.|+|+++. +..+|.   ++.+++|+.|+|++|......|..+.++++|
T Consensus       625 ~L~~~------------------~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        625 KLWDG------------------VHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccccc------------------cccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            65432                  1236788888888764 555553   6777888888888876655567778888888


Q ss_pred             cEEEeeCC-CCCCCChhhhcCCCCCcEEEcccCcc-cccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377        243 RILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSL-VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN  320 (1344)
Q Consensus       243 ~~L~Ls~n-~l~~l~~~~f~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~  320 (1344)
                      +.|++++| .+..+|...  ++++|+.|++++|.. ..+|.    ...+|+.|++++|.+..  ++.  ...+++|+.|.
T Consensus       684 ~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~--lP~--~~~l~~L~~L~  753 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE--FPS--NLRLENLDELI  753 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc--ccc--ccccccccccc
Confidence            88888876 466666543  577788888877743 23331    23567777777777654  221  12456666666


Q ss_pred             ccCCCCCcc-------ccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEc
Q psy16377        321 LSNNELTRI-------DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL  393 (1344)
Q Consensus       321 Ls~n~l~~~-------~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  393 (1344)
                      +.++....+       .+..+...++|+.|+|++|......+..+.++++|+.|++++|...+..|... .+++|+.|++
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L  832 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL  832 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence            655332111       11112223455556665554322222245555556666655553222222222 3455555555


Q ss_pred             cCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCC
Q psy16377        394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGEN  443 (1344)
Q Consensus       394 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n  443 (1344)
                      ++|......+.   ..++|+.|+|++|.+..+|.++..+++|+.|++++|
T Consensus       833 s~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        833 SGCSRLRTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             CCCCccccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCC
Confidence            55433222121   123455555555555555555555555555555543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.83  E-value=3.1e-19  Score=240.13  Aligned_cols=355  Identities=23%  Similarity=0.274  Sum_probs=268.5

Q ss_pred             CcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCC-------ccChhhhcCC-CCCCEEEcccccCcccCCcc
Q psy16377         43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV-------ELPVDVFSGL-RNLKRLTINTRNLQWDKSKK  114 (1344)
Q Consensus        43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~-------~l~~~~f~~l-~~L~~L~Ls~n~~~~~~~~~  114 (1344)
                      +.++.+.+.-+.+.  ...+.+.+|.++++|+.|.+..+.+.       .+| +.|..+ .+|+.|.+.++.+       
T Consensus       532 ~~v~~i~l~~~~~~--~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l-------  601 (1153)
T PLN03210        532 KKVLGITLDIDEID--ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPL-------  601 (1153)
T ss_pred             ceeeEEEeccCccc--eeeecHHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCC-------
Confidence            34555555544443  24567789999999999999765421       344 345555 4699999965543       


Q ss_pred             cccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC-CCCCCCcchhhhccccccCCCCccccCCCCcc
Q psy16377        115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS-IRDIDTLGFAVRRASAESNSGEKIECSGGMDL  193 (1344)
Q Consensus       115 l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L  193 (1344)
                       ..+|..| ...+|+.|+|++|.+..++.. +..+++|+.|+|+++. +..++..                   +.+++|
T Consensus       602 -~~lP~~f-~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~l-------------------s~l~~L  659 (1153)
T PLN03210        602 -RCMPSNF-RPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIPDL-------------------SMATNL  659 (1153)
T ss_pred             -CCCCCcC-CccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCCcc-------------------ccCCcc
Confidence             4577777 468999999999999988765 6789999999999875 6665542                   337899


Q ss_pred             cEEECCCCC-CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCC-CCCChhhhcCCCCCcEEEc
Q psy16377        194 RILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL-VSLPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       194 ~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~f~~l~~L~~L~L  271 (1344)
                      +.|+|++|. +..+|.  .+.++++|+.|++++|...+..|..+ ++++|+.|++++|.. ..+|.    ...+|++|++
T Consensus       660 e~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L  732 (1153)
T PLN03210        660 ETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDL  732 (1153)
T ss_pred             cEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeec
Confidence            999999984 666776  58999999999999986555556544 789999999999853 33442    2468999999


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCCCCC-----CCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEec
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN-----HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR  346 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  346 (1344)
                      ++|.+..+|...  .+++|+.|.+.++.....     .+....+...++|+.|++++|......|..++++++|+.|+|+
T Consensus       733 ~~n~i~~lP~~~--~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls  810 (1153)
T PLN03210        733 DETAIEEFPSNL--RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE  810 (1153)
T ss_pred             CCCccccccccc--cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECC
Confidence            999999888654  678899998877542110     0111223345789999999997766667789999999999999


Q ss_pred             CCC-ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCC-CCCc
Q psy16377        347 NNS-IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN-AIVE  424 (1344)
Q Consensus       347 ~n~-l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~  424 (1344)
                      +|. +..++...  .+++|+.|++++|......+..   ..+|+.|+|++|.+..+ |..+..+++|+.|++++| ++..
T Consensus       811 ~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~i-P~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        811 NCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEV-PWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccC-hHHHhcCCCCCEEECCCCCCcCc
Confidence            874 66676533  7899999999998654433322   36899999999999876 567899999999999995 6778


Q ss_pred             cchhhcCCCCccEEEccCCC
Q psy16377        425 IPSALSELPFLKTLDLGENQ  444 (1344)
Q Consensus       425 lp~~l~~l~~L~~L~Ls~n~  444 (1344)
                      +|..+..+++|+.|++++|.
T Consensus       885 l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCcccccccCCCeeecCCCc
Confidence            88888889999999998884

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.80  E-value=5.6e-19  Score=219.80  Aligned_cols=265  Identities=26%  Similarity=0.288  Sum_probs=164.4

Q ss_pred             CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377        126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT  205 (1344)
Q Consensus       126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~  205 (1344)
                      ..-..|+|+++.++.+|+.. .  ++|+.|++.+|+++.++..                     .++|++|+|++|+++.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l-~--~~L~~L~L~~N~Lt~LP~l---------------------p~~Lk~LdLs~N~Lts  256 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPAL---------------------PPELRTLEVSGNQLTS  256 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch-h--cCCCEEEccCCcCCCCCCC---------------------CCCCcEEEecCCccCc
Confidence            44667888888888877653 2  4678888888887766531                     4678888888888887


Q ss_pred             CCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377        206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH  285 (1344)
Q Consensus       206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~  285 (1344)
                      +|..     .++|+.|++++|.+..+ |..   ..+|+.|++++|+++.+|..    .++|+.|++++|.+..+|..   
T Consensus       257 LP~l-----p~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~l---  320 (788)
T PRK15387        257 LPVL-----PPGLLELSIFSNPLTHL-PAL---PSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPAL---  320 (788)
T ss_pred             ccCc-----ccccceeeccCCchhhh-hhc---hhhcCEEECcCCcccccccc----ccccceeECCCCccccCCCC---
Confidence            7642     35777888888877665 322   24677788888877777642    35677777777777776541   


Q ss_pred             CCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCcc
Q psy16377        286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH  365 (1344)
Q Consensus       286 ~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~  365 (1344)
                       ..+|+.|++++|.++.  ++.  +  ..+|+.|+|++|+++.++..    ..+|+.|++++|.+..++..    ..+|+
T Consensus       321 -p~~L~~L~Ls~N~L~~--LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l----~~~L~  385 (788)
T PRK15387        321 -PSELCKLWAYNNQLTS--LPT--L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL----PSGLK  385 (788)
T ss_pred             -cccccccccccCcccc--ccc--c--ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc----ccccc
Confidence             2356677777777664  321  1  13567777777776665431    24566666777766655531    24566


Q ss_pred             EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCC
Q psy16377        366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQI  445 (1344)
Q Consensus       366 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i  445 (1344)
                      .|++++|.+..++..    .++|+.|++++|.+..++. .   ..+|+.|++++|+++.+|..+..+++|+.|+|++|++
T Consensus       386 ~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~-l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        386 ELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM-L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             eEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc-c---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            666666666554321    2455666666666655432 1   2345566666666666666666666666666666666


Q ss_pred             CccCcchh
Q psy16377        446 SKIENGSF  453 (1344)
Q Consensus       446 ~~~~~~~~  453 (1344)
                      ++..+..+
T Consensus       458 s~~~~~~L  465 (788)
T PRK15387        458 SERTLQAL  465 (788)
T ss_pred             CchHHHHH
Confidence            55444333

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=6.8e-19  Score=219.08  Aligned_cols=261  Identities=21%  Similarity=0.277  Sum_probs=141.2

Q ss_pred             ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377        316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN  395 (1344)
Q Consensus       316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  395 (1344)
                      -..|+++++.++.+++. +.  .+|+.|++.+|.++.++.    .+++|++|++++|+++.++.    ..++|+.|++++
T Consensus       203 ~~~LdLs~~~LtsLP~~-l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCcCCcc-hh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC----cccccceeeccC
Confidence            44566666666654332 22  255666666666655543    23455555555555554431    123444555555


Q ss_pred             CcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcc
Q psy16377        396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSG  475 (1344)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  475 (1344)
                      |.+..+.. .   ..+|+.|++++|+++.+|..   .++|+.|++++|++.                        .++..
T Consensus       272 N~L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~------------------------~Lp~l  320 (788)
T PRK15387        272 NPLTHLPA-L---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA------------------------SLPAL  320 (788)
T ss_pred             Cchhhhhh-c---hhhcCEEECcCCcccccccc---ccccceeECCCCccc------------------------cCCCC
Confidence            54443321 1   13344444555544444431   234444444444444                        33321


Q ss_pred             cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377        476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL  555 (1344)
Q Consensus       476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L  555 (1344)
                          ..+|+.|++++|.++.++.  +  ..+|+.|+|++|+++.+|..   ..+|+.|++++|++..++  .+|.+|+.|
T Consensus       321 ----p~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP--~l~~~L~~L  387 (788)
T PRK15387        321 ----PSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLP--ALPSGLKEL  387 (788)
T ss_pred             ----cccccccccccCccccccc--c--ccccceEecCCCccCCCCCC---CcccceehhhccccccCc--ccccccceE
Confidence                1234444444444443321  1  12455555555555555432   234555566666665443  234566777


Q ss_pred             EcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcc
Q psy16377        556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK  635 (1344)
Q Consensus       556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~  635 (1344)
                      ++++|.|+.++..     ..+|+.|++++|++++++.  .+.+|+.|++++|+|+. +|..|.++++|+.|+|++|+|++
T Consensus       388 dLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~--l~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        388 IVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             EecCCcccCCCCc-----ccCCCEEEccCCcCCCCCc--chhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCc
Confidence            7777777766542     2367788888888777653  35577888888888875 46677888888888888888876


Q ss_pred             cccc
Q psy16377        636 LDLT  639 (1344)
Q Consensus       636 l~~~  639 (1344)
                      ..+.
T Consensus       460 ~~~~  463 (788)
T PRK15387        460 RTLQ  463 (788)
T ss_pred             hHHH
Confidence            5443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=1e-16  Score=201.36  Aligned_cols=120  Identities=24%  Similarity=0.337  Sum_probs=51.8

Q ss_pred             cceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCc
Q psy16377        507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR  586 (1344)
Q Consensus       507 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~  586 (1344)
                      |+.|++++|.++.+|..+  .++|+.|++++|.++.++ ..+|++|+.|++++|+++.++...    .++|+.|++++|+
T Consensus       306 L~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N~  378 (754)
T PRK15370        306 ITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPETL----PPTITTLDVSRNA  378 (754)
T ss_pred             HHHHHhcCCccccCCccc--cccceeccccCCccccCC-hhhcCcccEEECCCCCCCcCChhh----cCCcCEEECCCCc
Confidence            444444444444443322  134444444444444333 123344555555555444443211    1245555555555


Q ss_pred             ccccccccccCcccEEEcCCCcCCccC---CCCCCCCCCccEEEecCCCCc
Q psy16377        587 ILEISELSIPNSVEVLFINNNLIKSVK---PHTFFDKSNLARVDIYANDIT  634 (1344)
Q Consensus       587 l~~~~~~~~~~sL~~L~Ls~N~i~~~~---~~~f~~~~~L~~LdL~~N~l~  634 (1344)
                      ++.+++ .++.+|+.|++++|++.++.   |..+..++++..|++.+|.++
T Consensus       379 Lt~LP~-~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        379 LTNLPE-NLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CCCCCH-hHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            554332 23334555555555554331   112222344555555555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=2.2e-16  Score=198.41  Aligned_cols=225  Identities=24%  Similarity=0.314  Sum_probs=100.1

Q ss_pred             ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377        316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN  395 (1344)
Q Consensus       316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  395 (1344)
                      ...|+++++.++.++.. +  .+.|+.|+|++|.++.++...+   ++|+.|++++|.++.++...   ..+|+.|+|++
T Consensus       180 ~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLTTIPAC-I--PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATL---PDTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhh---hccccEEECcC
Confidence            34444544444443321 1  1245555555555555544322   34555555555554433211   12455555555


Q ss_pred             CcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcc
Q psy16377        396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSG  475 (1344)
Q Consensus       396 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  475 (1344)
                      |.+..++. .+.  ++|+.|++++|++..+|..+.  ++|+.|++++|+++.++.. +  .++|+.|++++|.+..++..
T Consensus       251 N~L~~LP~-~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~  322 (754)
T PRK15370        251 NRITELPE-RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPET  322 (754)
T ss_pred             CccCcCCh-hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCcc
Confidence            55554422 221  345555555555555554332  3555555555555544321 1  12445555555555444432


Q ss_pred             cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377        476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL  555 (1344)
Q Consensus       476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L  555 (1344)
                      .   .++|+.|++++|.++.++. .+  .++|+.|++++|.++.+|..+  .++|+.|+|++|++..++. .+|.+|+.|
T Consensus       323 l---~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~-~l~~sL~~L  393 (754)
T PRK15370        323 L---PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPE-NLPAALQIM  393 (754)
T ss_pred             c---cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCH-hHHHHHHHH
Confidence            1   1345555555555444322 11  134444555555444444332  1344444444444443322 122344444


Q ss_pred             EcCCCcCCCCC
Q psy16377        556 DIHGNYISSLN  566 (1344)
Q Consensus       556 ~Ls~n~l~~l~  566 (1344)
                      ++++|++..++
T Consensus       394 dLs~N~L~~LP  404 (754)
T PRK15370        394 QASRNNLVRLP  404 (754)
T ss_pred             hhccCCcccCc
Confidence            44444444443

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.63  E-value=9.6e-16  Score=155.91  Aligned_cols=133  Identities=25%  Similarity=0.414  Sum_probs=114.9

Q ss_pred             CCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccch
Q psy16377       1028 GEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRS 1107 (1344)
Q Consensus      1028 ~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~ 1107 (1344)
                      +.+..+.++  +|+.+.+++.|+....++++|++.+|+.+|....                                   
T Consensus         3 dvFISys~~--~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-----------------------------------   45 (140)
T smart00255        3 DVFISYSGK--EDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-----------------------------------   45 (140)
T ss_pred             eEEEECCCC--HHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-----------------------------------
Confidence            344444333  6888888899997777789999999999998887                                   


Q ss_pred             hHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCc--ccchhhHHHHhhhccEEEeCch
Q psy16377       1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE--AESDIELKPYLKSCMKIRWGEK 1185 (1344)
Q Consensus      1108 ~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~--~~~~~~l~~~l~~~~~l~w~~~ 1185 (1344)
                      +.|.++|++||++|+|+|++|++|+||..|++.|++.+.+.+..++|+|.+++.++  ..++.+++.+++.+ |++|+++
T Consensus        46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~-~~~w~~~  124 (140)
T smart00255       46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKN-YLKWPED  124 (140)
T ss_pred             HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHH-HhhcCCc
Confidence            78999999999999999999999999999999999999988889999999998863  33567999999988 9999866


Q ss_pred             h---hHHHhHhhcCCC
Q psy16377       1186 R---FWERLRYAMPTC 1198 (1344)
Q Consensus      1186 ~---Fw~~l~~~~p~~ 1198 (1344)
                      .   ||++++++||.+
T Consensus       125 ~~~~fW~~~~~~l~~~  140 (140)
T smart00255      125 EKERFWKKALYAVPSK  140 (140)
T ss_pred             hhHHHHHHHHHHhccC
Confidence            5   999999999973

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=1.5e-15  Score=177.97  Aligned_cols=275  Identities=22%  Similarity=0.273  Sum_probs=140.0

Q ss_pred             EEEccCCccc-ccccccccCCCceeEEEccCCcCCCC----ChhhhcCCCCCcEEEccCCCCCc-------cchhhcCCC
Q psy16377        366 TIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNI----DSKAFKNCSALKELDLSSNAIVE-------IPSALSELP  433 (1344)
Q Consensus       366 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~-------lp~~l~~l~  433 (1344)
                      .|+|..+.+. ......+..+..|+.|+++++.+...    .+..+...++|++|+++++.+..       ++..+..++
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            3455555554 22233344555566666666665432    12233445556666666665442       223445556


Q ss_pred             CccEEEccCCCCCccCcchhcCCCC---CcEEEcccCCCCCCCc----ccccCC-CCccEEEcCCCcCcccc----cccc
Q psy16377        434 FLKTLDLGENQISKIENGSFKNLQQ---LTDLRLVDNNIGNLSS----GMLYEL-PSLEVLNLSKNKIHQIE----IGTF  501 (1344)
Q Consensus       434 ~L~~L~Ls~n~i~~~~~~~~~~l~~---L~~L~L~~n~l~~l~~----~~~~~l-~~L~~L~Ls~n~i~~~~----~~~~  501 (1344)
                      +|+.|++++|.+....+..+..+..   |+.|++++|.++....    ..+..+ ++|+.|++++|.++...    ...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            6666666666655443333333333   6666666555532111    112333 55555555555554211    1123


Q ss_pred             cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCc---cccccC
Q psy16377        502 EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN---YYEIKD  573 (1344)
Q Consensus       502 ~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~---~~~l~~  573 (1344)
                      ..+++|+.|++++|.+++     ++..+..+++|+                      .|++++|.++..+.   ...+..
T Consensus       162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~----------------------~L~L~~n~i~~~~~~~l~~~~~~  219 (319)
T cd00116         162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLE----------------------VLDLNNNGLTDEGASALAETLAS  219 (319)
T ss_pred             HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCC----------------------EEeccCCccChHHHHHHHHHhcc
Confidence            334445555555554442     122233334444                      44554444432221   112344


Q ss_pred             CCcccEEECCCCccccccccc----c---cCcccEEEcCCCcCCcc----CCCCCCCCCCccEEEecCCCCccccccccc
Q psy16377        574 GLSIKNLDASHNRILEISELS----I---PNSVEVLFINNNLIKSV----KPHTFFDKSNLARVDIYANDITKLDLTALR  642 (1344)
Q Consensus       574 ~~~L~~L~Ls~N~l~~~~~~~----~---~~sL~~L~Ls~N~i~~~----~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~  642 (1344)
                      +++|+.|++++|.+++.....    +   ...|++|++++|.++..    ....+..+++|+.+++++|.++..+...+.
T Consensus       220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence            567888888888776422211    1   24788888888887622    123455568899999999999875433322


Q ss_pred             ccCCCCCCCCCeEEcCCCcc
Q psy16377        643 LKPVPQNKTLPEFYLGGNPF  662 (1344)
Q Consensus       643 ~~~~~~~~~l~~l~l~~Np~  662 (1344)
                      .........+.++++++|||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         300 ESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhhcCCchhhcccCCCCC
Confidence            11111113567777887774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=8.9e-15  Score=171.32  Aligned_cols=84  Identities=33%  Similarity=0.402  Sum_probs=36.4

Q ss_pred             CceeEEEccCCcCCCC----ChhhhcCCCCCcEEEccCCCCC-----ccchhhcCCCCccEEEccCCCCCccCc----ch
Q psy16377        386 YVLSKLTLSNNLLVNI----DSKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQISKIEN----GS  452 (1344)
Q Consensus       386 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~  452 (1344)
                      ++|+.|++++|.++..    ....+..+++|+.|++++|.+.     .++..+..+++|+.|++++|.+.+...    ..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            4444555554444421    1123334445555555555544     122333444455555555555443221    12


Q ss_pred             hcCCCCCcEEEcccCCC
Q psy16377        453 FKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       453 ~~~l~~L~~L~L~~n~l  469 (1344)
                      +..+++|+.|++++|.+
T Consensus       217 ~~~~~~L~~L~ls~n~l  233 (319)
T cd00116         217 LASLKSLEVLNLGDNNL  233 (319)
T ss_pred             hcccCCCCEEecCCCcC
Confidence            23344444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.37  E-value=1.8e-14  Score=140.33  Aligned_cols=160  Identities=28%  Similarity=0.486  Sum_probs=107.5

Q ss_pred             CCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCC
Q psy16377         41 PTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG  120 (1344)
Q Consensus        41 ~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~  120 (1344)
                      ..+++++|.|++|++    ..+++ .++.+.+|++|++.+|+|+++|. .++.+++|+.|++.-|        .+..+|.
T Consensus        31 ~~s~ITrLtLSHNKl----~~vpp-nia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmn--------rl~~lpr   96 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKL----TVVPP-NIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMN--------RLNILPR   96 (264)
T ss_pred             chhhhhhhhcccCce----eecCC-cHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchh--------hhhcCcc
Confidence            346777888888877    33553 56777888888888888877773 5777777777777433        3455677


Q ss_pred             cCCCCCCCCEEEccCCCCCc--cChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEEC
Q psy16377        121 SLDGLRELQVLNISSSNIKS--ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL  198 (1344)
Q Consensus       121 ~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL  198 (1344)
                      .|+.++.|+.|||.+|++.+  +|..+| .                                         +..|+.|.|
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff-~-----------------------------------------m~tlralyl  134 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFF-Y-----------------------------------------MTTLRALYL  134 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchh-H-----------------------------------------HHHHHHHHh
Confidence            77777777777777776652  222211 1                                         456666677


Q ss_pred             CCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhh
Q psy16377        199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGL  259 (1344)
Q Consensus       199 s~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  259 (1344)
                      +.|.+.-+|+  .++++++|+.|.+..|.+... |..++.++.|++|.+.+|.++.+|+.+
T Consensus       135 ~dndfe~lp~--dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  135 GDNDFEILPP--DVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             cCCCcccCCh--hhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHhcccceeeecChhh
Confidence            7777776666  367777777777777776665 666777777777777777777666643

>KOG0617|consensus

Probab=99.28  E-value=1.4e-13  Score=134.22  Aligned_cols=164  Identities=27%  Similarity=0.434  Sum_probs=113.3

Q ss_pred             cCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCC
Q psy16377        211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL  290 (1344)
Q Consensus       211 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  290 (1344)
                      .+-++.+++.|-|+.|.++.+ |..++.+.+|++|++++|+++++|.++ +.+++|+.|+++.|.+..+|.+ |+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccc-cCCCchh
Confidence            345556666666777777665 335667777777777777777777655 6677777777777777666665 4788888


Q ss_pred             CEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEcc
Q psy16377        291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS  370 (1344)
Q Consensus       291 ~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls  370 (1344)
                      ++|||.+|++....+ +..|..++.|+.|.|++|.+.-++ ..++.+++|+.|.+..|.+-+++. .++.+..|++|.+.
T Consensus       105 evldltynnl~e~~l-pgnff~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpk-eig~lt~lrelhiq  181 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSL-PGNFFYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPK-EIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhccccccccccC-CcchhHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcH-HHHHHHHHHHHhcc
Confidence            888888888765433 455666777777788887776554 346777788888888877766665 35666777777777


Q ss_pred             CCcccccccc
Q psy16377        371 ENRIHHITAH  380 (1344)
Q Consensus       371 ~n~l~~~~~~  380 (1344)
                      +|+++.++|.
T Consensus       182 gnrl~vlppe  191 (264)
T KOG0617|consen  182 GNRLTVLPPE  191 (264)
T ss_pred             cceeeecChh
Confidence            7777666553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2e-11  Score=126.17  Aligned_cols=115  Identities=31%  Similarity=0.388  Sum_probs=47.0

Q ss_pred             CCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCC
Q psy16377        797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ  876 (1344)
Q Consensus       797 f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  876 (1344)
                      +.+..+++.|+|.+|+|+.|.+-. ..+.+|+.|+|++|.|+.+.+  |..++.|++|+|++|+|+++.+.....+++|+
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S---TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccccccchh-hhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            345567888888888888885422 257889999999999999874  78899999999999999998654444689999


Q ss_pred             EEEccCCCCccccc-ccccCCCCCcEEEecCCcccCCCh
Q psy16377        877 VLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCSCA  914 (1344)
Q Consensus       877 ~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C~  914 (1344)
                      .|+|++|+|..+.. ..+..+++|+.|+|.+||+.-...
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~  130 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKN  130 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhh
Confidence            99999999988765 345678999999999999965555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=1.2e-11  Score=127.86  Aligned_cols=137  Identities=28%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             CCCCCCCCCCCC-CCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCc
Q psy16377        764 SEQQISTVPPRI-PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG  842 (1344)
Q Consensus       764 s~~~l~~~p~~i-p~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~  842 (1344)
                      +.+.+..+|... |..+++|+|.||.|+.|.... ..+.+|+.|++++|+|+.+.  .+..++.|++|+|++|+|+.+..
T Consensus         5 t~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~-~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    5 TANMIEQIAQYNNPVKLRELNLRGNQISTIENLG-ATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             -------------------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CH
T ss_pred             cccccccccccccccccccccccccccccccchh-hhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcccc
Confidence            344455555533 567899999999999987532 25789999999999999995  58889999999999999999976


Q ss_pred             ccccCccccceeeccccccccccC-ccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEE
Q psy16377        843 YEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVY  903 (1344)
Q Consensus       843 ~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~  903 (1344)
                      .....+++|++|+|++|+|..+.. ..+..+++|++|+|.+|.++.-+.   .++..+|+|+.||
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            444579999999999999998866 577789999999999999886433   3344568787776

>KOG1909|consensus

Probab=99.02  E-value=7.7e-11  Score=128.65  Aligned_cols=164  Identities=27%  Similarity=0.355  Sum_probs=83.2

Q ss_pred             cCCCcccEEEecCCCccccchhh-------------hcCCCCccEEEccCCcccccc----cccccCCCceeEEEccCCc
Q psy16377        335 KDLVFLQRLDLRNNSIGYIEDNA-------------FLSLYNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNL  397 (1344)
Q Consensus       335 ~~l~~L~~L~Ls~n~l~~i~~~~-------------f~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~  397 (1344)
                      .++..|++|.|.+|.+.......             ...-+.|+.+....|++....    ...|...+.|+.+.++.|.
T Consensus       117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~  196 (382)
T KOG1909|consen  117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG  196 (382)
T ss_pred             HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc
Confidence            34556666666666655433322             223456666666666665432    2234445566666666665


Q ss_pred             CCCCC----hhhhcCCCCCcEEEccCCCCC-----ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCC
Q psy16377        398 LVNID----SKAFKNCSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN  468 (1344)
Q Consensus       398 l~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  468 (1344)
                      |..-.    ...|..|++|+.|||.+|.++     .+...+..++.|+.|++++|.+......+|..             
T Consensus       197 I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~-------------  263 (382)
T KOG1909|consen  197 IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD-------------  263 (382)
T ss_pred             ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-------------
Confidence            54221    234555666666666666555     23344555555666666666555443332211             


Q ss_pred             CCCCCcccccCCCCccEEEcCCCcCccccc----ccccCCCccceEeccccCC
Q psy16377        469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEI----GTFEKNKRLAAIRLDSNFL  517 (1344)
Q Consensus       469 l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l  517 (1344)
                            ..-...|+|++|.+.+|.|+.-..    .+....+.|..|+|++|.+
T Consensus       264 ------al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ------ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ------HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                  001224556666666665543211    1223355666666666666

>KOG3207|consensus

Probab=98.94  E-value=1.8e-10  Score=128.92  Aligned_cols=206  Identities=25%  Similarity=0.281  Sum_probs=129.0

Q ss_pred             cCCCceeEEEccCCcCCCCCh-hhhcCCCCCcEEEccCCCCCc---cchhhcCCCCccEEEccCCCCCccCcch-hcCCC
Q psy16377        383 NGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVE---IPSALSELPFLKTLDLGENQISKIENGS-FKNLQ  457 (1344)
Q Consensus       383 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~  457 (1344)
                      .++.+|+.+.|.++.+..... .....|++++.|||+.|-+..   +-.-...+++|+.|+|+.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            345667777777766554432 345668888888888887663   3344567888888888888765433211 12467


Q ss_pred             CCcEEEcccCCCCCCC-cccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh--hHhhcCCCCcEEE
Q psy16377        458 QLTDLRLVDNNIGNLS-SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLN  534 (1344)
Q Consensus       458 ~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~  534 (1344)
                      +|+.|.|+.|.++.-. ......+|+|+.|++..|....+......-+..|+.|+|++|.+-+.+  .....++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            7888888888884221 123456888888888888644444344445667888888888887766  4566788888888


Q ss_pred             cCCCCCccccCCCc--------CCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccc
Q psy16377        535 LSENHLVWFDYAMV--------PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRIL  588 (1344)
Q Consensus       535 Ls~n~l~~~~~~~l--------p~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~  588 (1344)
                      ++.|.+.++.....        -++|+.|+++.|+|.+......+..+.+|+.|.+..|.+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            88888776532211        1345555555555554444333444445555554444443

>KOG1259|consensus

Probab=98.91  E-value=2.5e-10  Score=121.00  Aligned_cols=132  Identities=24%  Similarity=0.282  Sum_probs=91.9

Q ss_pred             CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEc
Q psy16377        456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNL  535 (1344)
Q Consensus       456 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L  535 (1344)
                      .+.|+.|+|++|.|+.+... ..-.|.++.|+++.|.|..+..  +..+++|+.|||++|.++.+.++-..+-++++|.|
T Consensus       283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            45678888888888877664 4567888888888888877754  66677888888888888887777777777888888


Q ss_pred             CCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc
Q psy16377        536 SENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI  590 (1344)
Q Consensus       536 s~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~  590 (1344)
                      ++|.+.++....---+|..||+++|+|..+.....+.+++.|+.+.|.+|.+.++
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8877765543333345666666666666655555555556666666666655544

>KOG3207|consensus

Probab=98.91  E-value=3.6e-10  Score=126.52  Aligned_cols=202  Identities=28%  Similarity=0.270  Sum_probs=98.5

Q ss_pred             CcccEEEecCCCccccch-hhhcCCCCccEEEccCCcccccc--cccccCCCceeEEEccCCcCCCCChhh-hcCCCCCc
Q psy16377        338 VFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHIT--AHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALK  413 (1344)
Q Consensus       338 ~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~  413 (1344)
                      .+|+++.|.++.+...+. .....|++++.|+|+.|-+....  ......+++|+.|+|+.|.+....... -..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            344444444444433221 12334455555555555443321  122334455555555555443221111 11345667


Q ss_pred             EEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCc-ccccCCCCccEEEcCC
Q psy16377        414 ELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSK  490 (1344)
Q Consensus       414 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~  490 (1344)
                      .|.|+.|+++  .+...+..+|+|+.|+|..|....+.......+..|+.|+|++|.+-..+. .....++.|..|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            7777777666  344445566777777777765333333344556667777777776644432 1244566677777777


Q ss_pred             CcCcccccccc------cCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCC
Q psy16377        491 NKIHQIEIGTF------EKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENH  539 (1344)
Q Consensus       491 n~i~~~~~~~~------~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~  539 (1344)
                      +.+.++.....      ...++|+.|++..|++.+.+  ..+..+.+|+.|.+..|.
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            66665532111      22345555555555554433  123334444444444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.89  E-value=3.1e-09  Score=128.29  Aligned_cols=179  Identities=31%  Similarity=0.435  Sum_probs=86.3

Q ss_pred             cccEEECCCCCCCCCCCCccCCCCC-CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        192 DLRILDLSHNKLRTLGDYSGITKFR-RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~l~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      .++.|++.+|.++.++..  ...+. +|+.|++++|.+..+ |..+..+++|+.|++++|++..++... ...+.|+.|+
T Consensus       117 ~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCCcccccCccc--cccchhhcccccccccchhhh-hhhhhccccccccccCCchhhhhhhhh-hhhhhhhhee
Confidence            344444444444444432  22221 444444444444443 223444444444444444444444321 1344445555


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +++|.+..++... .....|++|.+++|.+..   ....+..+.++..+.+.+|.+... +..++.+++++.|++++|.+
T Consensus       193 ls~N~i~~l~~~~-~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         193 LSGNKISDLPPEI-ELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             ccCCccccCchhh-hhhhhhhhhhhcCCccee---cchhhhhcccccccccCCceeeec-cchhccccccceeccccccc
Confidence            5555554444422 223335555555553211   133344455555555555554442 23345556666666666666


Q ss_pred             cccchhhhcCCCCccEEEccCCccccccccc
Q psy16377        351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHL  381 (1344)
Q Consensus       351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~  381 (1344)
                      ..+..  +..+.+++.|+++++.+....+..
T Consensus       268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         268 SSISS--LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccc--ccccCccCEEeccCccccccchhh
Confidence            66654  556666666666666665554433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.85  E-value=2.1e-09  Score=91.60  Aligned_cols=61  Identities=34%  Similarity=0.475  Sum_probs=40.6

Q ss_pred             CccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCC
Q psy16377        825 SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL  885 (1344)
Q Consensus       825 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l  885 (1344)
                      ++|++|+|++|+|+.+++..|.++++|++|+|++|.|+.+++++|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666666666666666666666666666666666666666666666666654

...

>KOG0531|consensus

Probab=98.84  E-value=4.5e-10  Score=135.71  Aligned_cols=241  Identities=30%  Similarity=0.369  Sum_probs=142.4

Q ss_pred             CceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcc
Q psy16377        386 YVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV  465 (1344)
Q Consensus       386 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  465 (1344)
                      ..++.+.+..|.+..+ ...+..+++|+.|++.+|.+..+...+..+++|++|++++|.|+.+..  +..+..|+.|+++
T Consensus        72 ~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLS  148 (414)
T ss_pred             HhHHhhccchhhhhhh-hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheec
Confidence            3344444445444442 122445566777777777776665446667777777777777776643  4555667777777


Q ss_pred             cCCCCCCCcccccCCCCccEEEcCCCcCccccc-ccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCcccc
Q psy16377        466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFD  544 (1344)
Q Consensus       466 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~  544 (1344)
                      +|.+..+..  +..++.|+.+++++|++..+.. . ...+.+++.+++.+|.+..+.+ +..+..+..+++..|.+..+.
T Consensus       149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             cCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceecc
Confidence            777766654  4557777777777777777665 2 3556677777777777765432 223334444466777766554


Q ss_pred             CCCcCCC--ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCC----CCCC
Q psy16377        545 YAMVPGN--LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP----HTFF  618 (1344)
Q Consensus       545 ~~~lp~~--L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~----~~f~  618 (1344)
                      .......  |+.+++++|.+..++  ..+..+..+..|+++.|++...........+..+..+.|.+.....    ....
T Consensus       225 ~l~~~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (414)
T KOG0531|consen  225 GLNELVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITS  302 (414)
T ss_pred             CcccchhHHHHHHhcccCcccccc--ccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccc
Confidence            3333333  677777777776653  1244456777777777777776665555556666666665542211    1133


Q ss_pred             CCCCccEEEecCCCCcc
Q psy16377        619 DKSNLARVDIYANDITK  635 (1344)
Q Consensus       619 ~~~~L~~LdL~~N~l~~  635 (1344)
                      ..++++.+.+.+|.+..
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  303 AAPTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccccCcccc
Confidence            34455555555554443

>KOG1909|consensus

Probab=98.84  E-value=1.2e-09  Score=119.47  Aligned_cols=131  Identities=24%  Similarity=0.277  Sum_probs=57.7

Q ss_pred             CCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccC----cchhcCCCCCcEEEcccCCCCCCC----ccc
Q psy16377        410 SALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIE----NGSFKNLQQLTDLRLVDNNIGNLS----SGM  476 (1344)
Q Consensus       410 ~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~l~----~~~  476 (1344)
                      +.|+.+....|.+..     +...|...+.|+.+.+..|.|....    ..+|..+++|+.|+|.+|.++.-.    ...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            344445444444432     2223444445555555554443211    233444555555555555442211    122


Q ss_pred             ccCCCCccEEEcCCCcCcccccccc-----cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCC
Q psy16377        477 LYELPSLEVLNLSKNKIHQIEIGTF-----EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHL  540 (1344)
Q Consensus       477 ~~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l  540 (1344)
                      +..+++|++|++++|.+..-...+|     ...++|+.|.+.+|.++.     +...+...+.|..|+|++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3444555555555555543322221     124555555555555542     122233345555555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.84  E-value=6e-09  Score=131.59  Aligned_cols=112  Identities=21%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             ccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccC
Q psy16377        803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG  882 (1344)
Q Consensus       803 L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~  882 (1344)
                      ++.|+|++|++....+..+..+++|+.|+|++|+++...+..|..+++|+.|+|++|+|+...+..+..+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55667777777766677788888888888888888876677788888888888888888877778888888999999999


Q ss_pred             CCCcccccccccC-CCCCcEEEecCCcccCCCh
Q psy16377        883 NRLKSFRAFDLNT-NSMLRKVYLGNNPFSCSCA  914 (1344)
Q Consensus       883 N~l~~~~~~~l~~-~~~L~~L~l~~Np~~C~C~  914 (1344)
                      |+++...+..+.. ...+..+++.+|+..|.+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9888654444543 2456789999999999765

>KOG0531|consensus

Probab=98.83  E-value=4.8e-10  Score=135.48  Aligned_cols=248  Identities=30%  Similarity=0.299  Sum_probs=187.5

Q ss_pred             cCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEE
Q psy16377        407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL  486 (1344)
Q Consensus       407 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  486 (1344)
                      ..+..++.+.+..|.+..+-..+..+++|+.|++.+|+|..+... +..+++|+.|++++|.|+.+..  +..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhh
Confidence            456778888899999988656688899999999999999988642 6778999999999999988875  6778889999


Q ss_pred             EcCCCcCcccccccccCCCccceEeccccCCCChhhH-hhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCC
Q psy16377        487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV-FTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL  565 (1344)
Q Consensus       487 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l  565 (1344)
                      ++++|.|..+.  .+..+..|+.+++++|.+..+... ...+.+++.+.+.+|.+..+........+..+++..|.++.+
T Consensus       146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec
Confidence            99999999875  455588999999999999988764 588999999999999988766555555666678889988877


Q ss_pred             CccccccCCCcccEEECCCCccccc-ccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccccccccc
Q psy16377        566 NNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK  644 (1344)
Q Consensus       566 ~~~~~l~~~~~L~~L~Ls~N~l~~~-~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~  644 (1344)
                      ........+ .|+.+++++|.+... ........+..|++.+|++....  .+.....+..+....|.+..... .....
T Consensus       224 ~~l~~~~~~-~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  299 (414)
T KOG0531|consen  224 EGLNELVML-HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA-ISQEY  299 (414)
T ss_pred             cCcccchhH-HHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh-hhccc
Confidence            653222111 389999999999877 44444567889999999887664  24455667777777777664311 11111


Q ss_pred             CCCCCCCCCeEEcCCCccc
Q psy16377        645 PVPQNKTLPEFYLGGNPFD  663 (1344)
Q Consensus       645 ~~~~~~~l~~l~l~~Np~~  663 (1344)
                      ..+....++.+++.+||..
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  300 ITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cccccccccccccccCccc
Confidence            2344566777788888753

>KOG0532|consensus

Probab=98.80  E-value=2.9e-10  Score=130.76  Aligned_cols=216  Identities=27%  Similarity=0.354  Sum_probs=173.6

Q ss_pred             EEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcCh
Q psy16377        154 TLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP  233 (1344)
Q Consensus       154 ~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~  233 (1344)
                      .|.|++-+++.++..++.                -.+..-...||+.|++..+|.  .+..+..|+.|.|..|.+..+ |
T Consensus        54 ~l~Ls~rrlk~fpr~a~~----------------~~ltdt~~aDlsrNR~~elp~--~~~~f~~Le~liLy~n~~r~i-p  114 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAAS----------------YDLTDTVFADLSRNRFSELPE--EACAFVSLESLILYHNCIRTI-P  114 (722)
T ss_pred             ccccccchhhcCCCcccc----------------ccccchhhhhccccccccCch--HHHHHHHHHHHHHHhccceec-c
Confidence            455666666666655442                125667789999999999998  478888999999999999876 7


Q ss_pred             hhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCC
Q psy16377        234 NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL  313 (1344)
Q Consensus       234 ~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l  313 (1344)
                      .+++++..|+.|+|+.|++..+|..++  .--|+.|.+++|+++.+|..+ +....|..||.+.|++..  + +..++++
T Consensus       115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~s--l-psql~~l  188 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQS--L-PSQLGYL  188 (722)
T ss_pred             hhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhh--c-hHHhhhH
Confidence            889999999999999999999998874  235999999999999999887 688899999999999876  3 6778899


Q ss_pred             CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccc--cCCCceeEE
Q psy16377        314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF--NGLYVLSKL  391 (1344)
Q Consensus       314 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L  391 (1344)
                      .+|+.|++..|.+..++++. .. -.|..||+++|++..++. .|..+.+|++|-|.+|.+..-+....  +...--++|
T Consensus       189 ~slr~l~vrRn~l~~lp~El-~~-LpLi~lDfScNkis~iPv-~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL  265 (722)
T KOG0532|consen  189 TSLRDLNVRRNHLEDLPEEL-CS-LPLIRLDFSCNKISYLPV-DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL  265 (722)
T ss_pred             HHHHHHHHhhhhhhhCCHHH-hC-CceeeeecccCceeecch-hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence            99999999999998886653 33 468999999999999987 68999999999999999987655432  223344666


Q ss_pred             EccCCc
Q psy16377        392 TLSNNL  397 (1344)
Q Consensus       392 ~Ls~n~  397 (1344)
                      +...|+
T Consensus       266 ~~qA~q  271 (722)
T KOG0532|consen  266 STQACQ  271 (722)
T ss_pred             cchhcc
Confidence            666663

>KOG1259|consensus

Probab=98.78  E-value=2.1e-09  Score=114.13  Aligned_cols=129  Identities=25%  Similarity=0.347  Sum_probs=59.2

Q ss_pred             CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377        241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN  320 (1344)
Q Consensus       241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~  320 (1344)
                      .|++||||+|.|+.+.+++ .-.+.++.|+++.|.+..+..  ++.+++|+.|||++|.++.  + ...-..+-+++.|.
T Consensus       285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~--~-~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE--C-VGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh--hhhcccceEeecccchhHh--h-hhhHhhhcCEeeee
Confidence            3444444444444444333 334444555555554444433  3444555555555554433  1 11222334455555


Q ss_pred             ccCCCCCccccccccCCCcccEEEecCCCccccch-hhhcCCCCccEEEccCCccccc
Q psy16377        321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHI  377 (1344)
Q Consensus       321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~  377 (1344)
                      |++|.+..+.  .+..+.+|..||+++|+|..+.. ..++++|.|+.+.|.+|++.++
T Consensus       359 La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  359 LAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            5555444332  13444555555555555543322 2344555555555555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=5e-09  Score=89.29  Aligned_cols=61  Identities=33%  Similarity=0.441  Sum_probs=45.9

Q ss_pred             CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecccccc
Q psy16377        801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI  861 (1344)
Q Consensus       801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l  861 (1344)
                      ++|+.|++++|+|+.+++.+|.++++|++|+|++|+++.++++.|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777777777777777777777777777777777777777777777777765

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.76  E-value=1.3e-08  Score=122.95  Aligned_cols=195  Identities=30%  Similarity=0.362  Sum_probs=103.9

Q ss_pred             EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCC-CCcEEEcccCCCCCCCcccccCCCCccEEEcCCCc
Q psy16377        414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ-QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK  492 (1344)
Q Consensus       414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~  492 (1344)
                      .+++..+.+..-...+..++.++.|++.+|.++.+.+. ..... +|+.|++++|.+..++. .+..++.|+.|++++| 
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N-  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFN-  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhh-hhhccccccccccCCc-
Confidence            45555555533333334445555555555555554431 12221 45555555555544421 1334444444444444 


Q ss_pred             CcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCC-CcCCCccEEEcCCCcCCCCCccccc
Q psy16377        493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA-MVPGNLKWLDIHGNYISSLNNYYEI  571 (1344)
Q Consensus       493 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~l~~~~~l  571 (1344)
                                             .+.+++.....++.|+.|++++|++..++.. ..+..|+.|.+++|.+.....  .+
T Consensus       174 -----------------------~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~  228 (394)
T COG4886         174 -----------------------DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS--SL  228 (394)
T ss_pred             -----------------------hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch--hh
Confidence                                   4444444433445555555555555444433 244445555555553222221  23


Q ss_pred             cCCCcccEEECCCCcccc-cccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccc
Q psy16377        572 KDGLSIKNLDASHNRILE-ISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDL  638 (1344)
Q Consensus       572 ~~~~~L~~L~Ls~N~l~~-~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~  638 (1344)
                      ..+.++..+.+.+|++.. ......+.+++.|++++|.++.+..  +....+|+.+++++|.+.....
T Consensus       229 ~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            345566667777777766 2333444568888888888877655  7777888888888888776544

>KOG0532|consensus

Probab=98.70  E-value=7.8e-10  Score=127.29  Aligned_cols=175  Identities=22%  Similarity=0.392  Sum_probs=84.4

Q ss_pred             CCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcC
Q psy16377         69 NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCS  148 (1344)
Q Consensus        69 ~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  148 (1344)
                      .+.--...||+.|++..+|. .++.+..|..|.|+.|.+        ..+|..+.++..|+.|||+.|.++.+|.. ++.
T Consensus        73 ~ltdt~~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~  142 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPE-EACAFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSNQLSHLPDG-LCD  142 (722)
T ss_pred             cccchhhhhccccccccCch-HHHHHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccchhhcCChh-hhc
Confidence            34444556666666666663 344555555555544333        23555566666666666666666655554 333


Q ss_pred             CCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC
Q psy16377        149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI  228 (1344)
Q Consensus       149 l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i  228 (1344)
                      |+ |+.|.+++|+++.++..                  .+....|..||.+.|++..++.  .++++.+|+.|++..|++
T Consensus       143 lp-Lkvli~sNNkl~~lp~~------------------ig~~~tl~~ld~s~nei~slps--ql~~l~slr~l~vrRn~l  201 (722)
T KOG0532|consen  143 LP-LKVLIVSNNKLTSLPEE------------------IGLLPTLAHLDVSKNEIQSLPS--QLGYLTSLRDLNVRRNHL  201 (722)
T ss_pred             Cc-ceeEEEecCccccCCcc------------------cccchhHHHhhhhhhhhhhchH--HhhhHHHHHHHHHhhhhh
Confidence            32 55555555555544331                  1124445555555555555444  244444455555444444


Q ss_pred             CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377        229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV  277 (1344)
Q Consensus       229 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  277 (1344)
                      ..+ |..++.| .|..||++.|++..||.. |.+++.|++|.|.+|.+.
T Consensus       202 ~~l-p~El~~L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  202 EDL-PEELCSL-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhC-CHHHhCC-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCC
Confidence            444 2233322 344444444444444432 234444444444444433

>KOG4658|consensus

Probab=98.68  E-value=1.6e-08  Score=130.14  Aligned_cols=108  Identities=25%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             CCcccEEECCCCC--CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCc
Q psy16377        190 GMDLRILDLSHNK--LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS  267 (1344)
Q Consensus       190 l~~L~~LdLs~n~--l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~  267 (1344)
                      +++|++|-+..|.  +..++.. .|..++.|++|||++|.-.+..|..+++|-+|++|+++++.+..+|.++ .+++.|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhh
Confidence            3456666555554  3344332 3555666666666665544455666666666666666666666666553 5566666


Q ss_pred             EEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377        268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH  299 (1344)
Q Consensus       268 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~  299 (1344)
                      +|++..+......++....+.+|++|.+....
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccc
Confidence            66666554333334444556666666665443

>KOG4658|consensus

Probab=98.51  E-value=5.8e-08  Score=124.99  Aligned_cols=128  Identities=24%  Similarity=0.346  Sum_probs=77.0

Q ss_pred             CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC--CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCC-C
Q psy16377        126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS--IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHN-K  202 (1344)
Q Consensus       126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n-~  202 (1344)
                      ...+...+-+|.+..++...  .+++|++|-+..|.  +..++...|                 ..++.|++|||++| .
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff-----------------~~m~~LrVLDLs~~~~  583 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFF-----------------RSLPLLRVLDLSGNSS  583 (889)
T ss_pred             hheeEEEEeccchhhccCCC--CCCccceEEEeecchhhhhcCHHHH-----------------hhCcceEEEECCCCCc
Confidence            45555666666555555432  34566666666664  333332222                 22667777777765 4


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCc
Q psy16377        203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS  275 (1344)
Q Consensus       203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~  275 (1344)
                      +..+|.  .++.+-+|+.|+|+++.+..+ |..+++|..|.+|++..+.....+++....+.+|++|.+....
T Consensus       584 l~~LP~--~I~~Li~LryL~L~~t~I~~L-P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  584 LSKLPS--SIGELVHLRYLDLSDTGISHL-PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cCcCCh--HHhhhhhhhcccccCCCcccc-chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            556665  467777777777777777654 6667777777777777665444445555667777777765543

>TIGR00864 PCC polycystin cation channel protein

Probab=98.16  E-value=1.4e-06  Score=118.58  Aligned_cols=82  Identities=21%  Similarity=0.411  Sum_probs=64.7

Q ss_pred             EccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCCCccccccCC--cc
Q psy16377        879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLN--ST  956 (1344)
Q Consensus       879 ~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~~~~~~~~~~--~~  956 (1344)
                      ||++|+|+.|++..|..+++|+.|+|++|||.|||+ +.||+.|++++...+.....+.|..|....+. ...++.  +.
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~-L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~-~L~~l~~~d~   78 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG-LARLPRWAEEKGVKVRQPEAALCAGPGALAGQ-PLLGIPLLDS   78 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccc-cHHHHHHHHhcCccccCCcccCCCCChHHCCC-CcccCCcccC
Confidence            578899999999989889999999999999999999 79999999988777777788999998754332 233333  33


Q ss_pred             cccCcc
Q psy16377        957 TCTEYY  962 (1344)
Q Consensus       957 ~C~~~~  962 (1344)
                      .|..++
T Consensus        79 ~C~~~y   84 (2740)
T TIGR00864        79 GCDEEY   84 (2740)
T ss_pred             CCCCcc
Confidence            466443

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2120|consensus

Probab=98.15  E-value=9.6e-08  Score=102.03  Aligned_cols=86  Identities=24%  Similarity=0.240  Sum_probs=57.7

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCCCC-hhhhcCCCCCc
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVSLP-EGLFSSCRDIS  267 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~-~~~f~~l~~L~  267 (1344)
                      -+.|++||||+..|+.-.-...++.|.+|+.|.|.++++.+-+...+++-.+|+.|+|+.+. +++.. .-+|.+|+.|.
T Consensus       184 rsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  184 RSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            35689999998887642211146788899999999999988777888888889999988863 33221 12344444555


Q ss_pred             EEEcccCc
Q psy16377        268 EIYAQKNS  275 (1344)
Q Consensus       268 ~L~L~~n~  275 (1344)
                      +|+|+.|.
T Consensus       264 ~LNlsWc~  271 (419)
T KOG2120|consen  264 ELNLSWCF  271 (419)
T ss_pred             hcCchHhh
Confidence            55544443

>PLN03150 hypothetical protein; Provisional

Probab=98.12  E-value=6.4e-06  Score=104.32  Aligned_cols=105  Identities=24%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             CcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377        412 LKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK  490 (1344)
Q Consensus       412 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  490 (1344)
                      ++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+....+..+.++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455555555554 4555555555555555555555555555555555555555555555322223355556666666666


Q ss_pred             CcCcccccccccC-CCccceEeccccC
Q psy16377        491 NKIHQIEIGTFEK-NKRLAAIRLDSNF  516 (1344)
Q Consensus       491 n~i~~~~~~~~~~-l~~L~~L~L~~n~  516 (1344)
                      |++++..+..+.. ..++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            6555544444433 1334556666554

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=98.10  E-value=1e-06  Score=83.91  Aligned_cols=82  Identities=24%  Similarity=0.451  Sum_probs=62.2

Q ss_pred             chhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377       1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus      1036 ~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
                      +|.+|| +.|...|+.  .||++++.. |..+|....                                   +.|.++++
T Consensus         8 ~D~~~a-~~l~~~L~~--~g~~v~~d~-~~~~g~~~~-----------------------------------~~i~~~i~   48 (102)
T PF13676_consen    8 EDREFA-ERLAERLES--AGIRVFLDR-DIPPGEDWR-----------------------------------EEIERAIE   48 (102)
T ss_dssp             GGCCCH-HHHHHHHHH--TT--EE-GG-EE-TTS-HH-----------------------------------CCCHHCCT
T ss_pred             CcHHHH-HHHHHHHhh--cCCEEEEEE-eCCCCCCHH-----------------------------------HHHHHHHH
Confidence            455555 445778875  478888774 999999888                                   78999999


Q ss_pred             hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCC
Q psy16377       1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIV 1161 (1344)
Q Consensus      1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~ 1161 (1344)
                      +|+.+|+++|++|++++||+.|+..|.     +..+++|+|.+++.
T Consensus        49 ~s~~~i~~~S~~~~~s~~~~~E~~~a~-----~~~~~iipv~~~~~   89 (102)
T PF13676_consen   49 RSDCVIVLLSPNYLKSPWCRFELGAAW-----KRGKPIIPVRLDPC   89 (102)
T ss_dssp             TEEEEEEEEEHHHHCTHHHHHHHHHHH-----CTSESEEEEECSGG
T ss_pred             hCCEEEEEECcccccChHHHHHHHHHH-----HCCCEEEEEEECCc
Confidence            999999999999999999999999883     24457999987643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.09  E-value=6.1e-06  Score=82.36  Aligned_cols=109  Identities=20%  Similarity=0.360  Sum_probs=48.9

Q ss_pred             cCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccC
Q psy16377        792 IPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNA  871 (1344)
Q Consensus       792 l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~  871 (1344)
                      |+..+|.++.+|+.+.+.+ .+..|...+|.++++|+.+++.++ +..+....|.++++|+.+.+.+ .+..++...|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            4455555555555555553 455555555555555555555553 5555555555555555555543 555555555555


Q ss_pred             CCCCCEEEccCCCCcccccccccCCCCCcEEEec
Q psy16377        872 LISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG  905 (1344)
Q Consensus       872 l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~  905 (1344)
                      +++|+.+++..| +..++...|... .++.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555555544 555555555544 45555443

>KOG1859|consensus

Probab=98.09  E-value=5.8e-08  Score=114.70  Aligned_cols=191  Identities=25%  Similarity=0.375  Sum_probs=130.7

Q ss_pred             CCcCCCCCCCCEEEccCCCCCccChhhhcCC-CCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEE
Q psy16377        119 PGSLDGLRELQVLNISSSNIKSISDDVFCSL-ANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILD  197 (1344)
Q Consensus       119 p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  197 (1344)
                      |-++-..++|++|.|.++.|.... + +..+ ..|++|... |.+..+... |+  ...+.+..+-     .--.|...+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~-G-L~~lr~qLe~LIC~-~Sl~Al~~v-~a--scggd~~ns~-----~Wn~L~~a~  170 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK-G-LQELRHQLEKLICH-NSLDALRHV-FA--SCGGDISNSP-----VWNKLATAS  170 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh-h-hHHHHHhhhhhhhh-ccHHHHHHH-HH--Hhccccccch-----hhhhHhhhh
Confidence            445566778888988888776521 1 1111 235555433 222221110 11  0011111110     134688889


Q ss_pred             CCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377        198 LSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV  277 (1344)
Q Consensus       198 Ls~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  277 (1344)
                      .++|.+..+..  ++.-++.|+.|+|+.|++.+.  +.+..|+.|++|||++|.+..+|.-.-.+|. |..|.+.+|.++
T Consensus       171 fsyN~L~~mD~--SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  171 FSYNRLVLMDE--SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             cchhhHHhHHH--HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence            99999887765  577889999999999999887  3788999999999999999988875545555 999999999888


Q ss_pred             ccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc
Q psy16377        278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR  328 (1344)
Q Consensus       278 ~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~  328 (1344)
                      .+-.  +.++.+|+.||+++|-+.+. -....+..+..|+.|+|.||.+.-
T Consensus       246 tL~g--ie~LksL~~LDlsyNll~~h-seL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  246 TLRG--IENLKSLYGLDLSYNLLSEH-SELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhh--HHhhhhhhccchhHhhhhcc-hhhhHHHHHHHHHHHhhcCCcccc
Confidence            7754  47889999999999988763 223445667788888998887653

>KOG1644|consensus

Probab=98.06  E-value=4.4e-06  Score=85.31  Aligned_cols=124  Identities=22%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             EEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccc
Q psy16377        781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR  860 (1344)
Q Consensus       781 ~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~  860 (1344)
                      +++|.+.++..+..- =..+.....++|++|.|..+.  .|.+++.|.+|.|++|+|+.|.+..-.-+++|+.|.|.+|.
T Consensus        23 e~~LR~lkip~ienl-g~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   23 ELDLRGLKIPVIENL-GATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccchhhc-cccccccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            455555555544431 012356777888888887774  47788888888888888888888777778888888888888


Q ss_pred             cccccC-ccccCCCCCCEEEccCCCCccc---ccccccCCCCCcEEEecCC
Q psy16377        861 IEYIAN-GTFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNN  907 (1344)
Q Consensus       861 l~~i~~-~~f~~l~~L~~L~L~~N~l~~~---~~~~l~~~~~L~~L~l~~N  907 (1344)
                      |..+.. ..+..+|+|++|.+-+|.++.-   ...++-.+++|+.||..+-
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            877754 5566778888888888877663   3344556688888887663

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.01  E-value=1.3e-05  Score=79.93  Aligned_cols=117  Identities=17%  Similarity=0.304  Sum_probs=79.3

Q ss_pred             CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377        778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ  857 (1344)
Q Consensus       778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  857 (1344)
                      .++.+.+.. .+..|+..+|.++.+|+.+.+.++ +..+...+|.++++|+.+++.+ .+..++...|..+++|+.+++.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            467777764 688999999999999999999885 9999999999999999999976 8888999999999999999998


Q ss_pred             ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377        858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR  900 (1344)
Q Consensus       858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~  900 (1344)
                      .+ ++.++...|..+ +|+.+.+.+ .+..++...|.++++|+
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            76 999999999998 999999986 78888888888776653

>KOG1859|consensus

Probab=97.97  E-value=4.6e-07  Score=107.27  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=93.3

Q ss_pred             CCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCC
Q psy16377        797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ  876 (1344)
Q Consensus       797 f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  876 (1344)
                      +.-++.|+.|+|++|+++.+.  .+..|+.|+.|||++|.++.++.....++. |..|.|++|.++++-  .+.++.+|+
T Consensus       183 Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~  257 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR--GIENLKSLY  257 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh--hHHhhhhhh
Confidence            344577888888888888885  677888999999999999888876666666 999999999888874  456788899


Q ss_pred             EEEccCCCCcccccccc-cCCCCCcEEEecCCcccCCChhhHHHHHHHh
Q psy16377        877 VLQLDGNRLKSFRAFDL-NTNSMLRKVYLGNNPFSCSCATLQELQTWII  924 (1344)
Q Consensus       877 ~L~L~~N~l~~~~~~~l-~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~  924 (1344)
                      -|||+.|-|....+-.+ ..+..|..|+|.|||+-|.=..-+.-.+++.
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~  306 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLH  306 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhc
Confidence            99999998877554222 2346788999999999887654333445554

>PLN03194 putative disease resistance protein; Provisional

Probab=97.97  E-value=2.8e-05  Score=79.59  Aligned_cols=92  Identities=8%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             CccCCccCCCCchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccC
Q psy16377       1025 KHFGEDREKLPKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQT 1102 (1344)
Q Consensus      1025 ~~~~~~~~~~~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~ 1102 (1344)
                      +.||-+.+.-.+|.  .|+ ..|...|+.  .|++.++-+.++.+|..+.                              
T Consensus        25 ~~yDVFISFrG~DtR~~Fv-shL~~aL~~--~GI~vF~D~~el~~G~~i~------------------------------   71 (187)
T PLN03194         25 KPCDVFINHRGIDTKRTIA-TLLYDHLSR--LNLRPFLDNKNMKPGDKLF------------------------------   71 (187)
T ss_pred             CCCcEEEeCCCccccccHH-HHHHHHHHH--CCCEEEEcCccccCCCcHH------------------------------
Confidence            34454544444553  577 677899986  4699999888999999998                              


Q ss_pred             CccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377       1103 EWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus      1103 ~w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
                           +.|..||+.||..|+|+|++|..|.||..|+-.++.     ...+||+|+|+
T Consensus        72 -----~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e-----~~~~ViPIFY~  118 (187)
T PLN03194         72 -----DKINSAIRNCKVGVAVFSPRYCESYFCLHELALIME-----SKKRVIPIFCD  118 (187)
T ss_pred             -----HHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHH-----cCCEEEEEEec
Confidence                 789999999999999999999999999999987764     34689999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=3.4e-05  Score=89.59  Aligned_cols=91  Identities=14%  Similarity=0.126  Sum_probs=44.8

Q ss_pred             ccceEecccc-CCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCc-CCCCCccccccCCCcccEEECC
Q psy16377        506 RLAAIRLDSN-FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNY-ISSLNNYYEIKDGLSIKNLDAS  583 (1344)
Q Consensus       506 ~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~-l~~l~~~~~l~~~~~L~~L~Ls  583 (1344)
                      +|+.|++++| .+..+|      .+|+.|+++.+.+..+  ..+|++|+.|.+.+++ ....+....+.  .+|+.|+++
T Consensus        95 nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~~~~L--~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is  164 (426)
T PRK15386         95 GLEKLTVCHCPEISGLP------ESVRSLEIKGSATDSI--KNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLT  164 (426)
T ss_pred             hhhheEccCcccccccc------cccceEEeCCCCCccc--ccCcchHhheeccccccccccccccccC--CcccEEEec
Confidence            4555555554 333333      2355555555444322  4566666666664322 11100000011  357777777


Q ss_pred             CCcccccccccccCcccEEEcCCC
Q psy16377        584 HNRILEISELSIPNSVEVLFINNN  607 (1344)
Q Consensus       584 ~N~l~~~~~~~~~~sL~~L~Ls~N  607 (1344)
                      +|....+ +..+|.+|+.|+++.+
T Consensus       165 ~c~~i~L-P~~LP~SLk~L~ls~n  187 (426)
T PRK15386        165 GCSNIIL-PEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCcccC-cccccccCcEEEeccc
Confidence            7665543 2346677777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.86  E-value=3e-06  Score=89.72  Aligned_cols=200  Identities=23%  Similarity=0.286  Sum_probs=94.7

Q ss_pred             CCCCCCCCEEEccCCCCCCcChhhhc----CCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCC
Q psy16377        212 ITKFRRLQNLHLENNEISQIAPNAFV----ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKL  287 (1344)
Q Consensus       212 l~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l  287 (1344)
                      +..+..+..++||+|.|......+++    +-.+|+..+++.-........+..+             +.-+ ...+.+|
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~-------------L~~L-l~aLlkc   91 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSN-------------LVML-LKALLKC   91 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHH-------------HHHH-HHHHhcC
Confidence            34466677777777777654333333    3345555555543222111111110             0011 1123566


Q ss_pred             CCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhh---------
Q psy16377        288 EQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF---------  358 (1344)
Q Consensus       288 ~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f---------  358 (1344)
                      ++|+.++||.|.+.....  ..+                    ...+++-+.|.+|.|++|.+..+..+.+         
T Consensus        92 p~l~~v~LSDNAfg~~~~--e~L--------------------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~  149 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFP--EEL--------------------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY  149 (388)
T ss_pred             CcceeeeccccccCcccc--hHH--------------------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH
Confidence            777777777776654211  111                    0112233444455555554443332221         


Q ss_pred             ----cCCCCccEEEccCCccccccc----ccccCCCceeEEEccCCcCCCCCh-----hhhcCCCCCcEEEccCCCCCc-
Q psy16377        359 ----LSLYNLHTIYLSENRIHHITA----HLFNGLYVLSKLTLSNNLLVNIDS-----KAFKNCSALKELDLSSNAIVE-  424 (1344)
Q Consensus       359 ----~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~-  424 (1344)
                          ++-|.|+.+.+..|++..-+.    ..+.....|+.+.+..|.|.....     ..+..+.+|+.|||.+|.++. 
T Consensus       150 nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~  229 (388)
T COG5238         150 NKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE  229 (388)
T ss_pred             HhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence                234667777777776643322    222333456666666666543211     122335566666666666552 


Q ss_pred             ----cchhhcCCCCccEEEccCCCCCc
Q psy16377        425 ----IPSALSELPFLKTLDLGENQISK  447 (1344)
Q Consensus       425 ----lp~~l~~l~~L~~L~Ls~n~i~~  447 (1344)
                          +...+...+.|+.|.+.+|-++.
T Consensus       230 gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         230 GSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             hHHHHHHHhcccchhhhccccchhhcc
Confidence                22334445556666666665444

>KOG1644|consensus

Probab=97.82  E-value=2e-05  Score=80.59  Aligned_cols=105  Identities=25%  Similarity=0.271  Sum_probs=87.2

Q ss_pred             CccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEcc
Q psy16377        802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD  881 (1344)
Q Consensus       802 ~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~  881 (1344)
                      .-+.++|.+.+|..+.+ --..+.+...+||++|.+..+..  |..++.|..|.|++|+|+.|++..-..+++|+.|.|.
T Consensus        20 ~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            35677888888877765 12234678899999999998864  8899999999999999999999877778999999999


Q ss_pred             CCCCccccc-ccccCCCCCcEEEecCCcc
Q psy16377        882 GNRLKSFRA-FDLNTNSMLRKVYLGNNPF  909 (1344)
Q Consensus       882 ~N~l~~~~~-~~l~~~~~L~~L~l~~Np~  909 (1344)
                      +|.|..+.+ .-+..+++|++|.+-+||.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCch
Confidence            999888654 2355679999999999997

>KOG2120|consensus

Probab=97.81  E-value=1.2e-06  Score=93.95  Aligned_cols=128  Identities=21%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             CcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCC-cccccCCCCccEEE
Q psy16377        412 LKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLS-SGMLYELPSLEVLN  487 (1344)
Q Consensus       412 L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~-~~~~~~l~~L~~L~  487 (1344)
                      |+.|||+...++  .+...+..|.+|+.|.|.++++.+.....++...+|+.|+++.+.- +.-. .-.+.+|+.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            444444444443  2333344445555555555555444444444445555555554322 1111 12345566666666


Q ss_pred             cCCCcCcccccccc-cC-CCccceEeccccC----CCChhhHhhcCCCCcEEEcCCCC
Q psy16377        488 LSKNKIHQIEIGTF-EK-NKRLAAIRLDSNF----LTDINGVFTYLAQLLWLNLSENH  539 (1344)
Q Consensus       488 Ls~n~i~~~~~~~~-~~-l~~L~~L~L~~n~----l~~l~~~~~~l~~L~~L~Ls~n~  539 (1344)
                      ++.|.+......+. .. -++|+.|+|+|+.    .+.+.-....+++|..||||+|.
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            66664432211110 00 1345666666552    12333344566667777766653

>KOG4579|consensus

Probab=97.81  E-value=6.3e-07  Score=85.43  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=74.7

Q ss_pred             CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEc
Q psy16377        801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL  880 (1344)
Q Consensus       801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L  880 (1344)
                      ..|+..+|++|.+...++.--...+.++.|+|++|.|+.++.. |..++.|+.|+++.|.|...+.-.+ .+.+|-.|+.
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds  130 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDS  130 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHH-HHHhHHHhcC
Confidence            4455556666666555443333445666777777777777554 7777777777777777776654333 3777777777


Q ss_pred             cCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHH
Q psy16377        881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW  922 (1344)
Q Consensus       881 ~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w  922 (1344)
                      .+|.+.-++...| .-.....++++++||.-.|.  ..++.|
T Consensus       131 ~~na~~eid~dl~-~s~~~al~~lgnepl~~~~~--~klqa~  169 (177)
T KOG4579|consen  131 PENARAEIDVDLF-YSSLPALIKLGNEPLGDETK--KKLQAL  169 (177)
T ss_pred             CCCccccCcHHHh-ccccHHHHHhcCCcccccCc--cccccc
Confidence            7777777776633 22334456679999999997  334444

>KOG2982|consensus

Probab=97.80  E-value=1.1e-05  Score=86.75  Aligned_cols=202  Identities=23%  Similarity=0.246  Sum_probs=111.4

Q ss_pred             ceeEEEccCCcCCCCCh-hhh-cCCCCCcEEEccCCCCC---ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcE
Q psy16377        387 VLSKLTLSNNLLVNIDS-KAF-KNCSALKELDLSSNAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD  461 (1344)
Q Consensus       387 ~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  461 (1344)
                      .++-|.+.++.+..... ..| ..++.+++|||.+|.++   ++...+.++|.|++|+|+.|++.......-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            34455555655544332 122 23678888999999887   45556678899999999999876643221135678888


Q ss_pred             EEcccCCC--CCCCcccccCCCCccEEEcCCCcCccccc--cccc-CCCccceEeccccCCCC---hhhHhhcCCCCcEE
Q psy16377        462 LRLVDNNI--GNLSSGMLYELPSLEVLNLSKNKIHQIEI--GTFE-KNKRLAAIRLDSNFLTD---INGVFTYLAQLLWL  533 (1344)
Q Consensus       462 L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~-~l~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L  533 (1344)
                      |.|.+..+  +... ..+..+|.++.|.++.|.+..+..  .... ..+.+++|.+..|....   +...-.-.+++..+
T Consensus       126 lVLNgT~L~w~~~~-s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTGLSWTQST-SSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCCCChhhhh-hhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            88888777  3332 235678888888888885443321  1111 12334444444442211   11111224455555


Q ss_pred             EcCCCCCccccCC---CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccc
Q psy16377        534 NLSENHLVWFDYA---MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE  589 (1344)
Q Consensus       534 ~Ls~n~l~~~~~~---~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~  589 (1344)
                      -+..|.+.+....   .--+.+..|+|+.++|.+....-.+..++.|..|.+++|.+.+
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            5555544432110   0112344566666666655544445555666666666665544

>KOG2982|consensus

Probab=97.76  E-value=1.9e-05  Score=84.91  Aligned_cols=202  Identities=20%  Similarity=0.228  Sum_probs=113.9

Q ss_pred             cccEEEecCCCccccchhh-h-cCCCCccEEEccCCccccc--ccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcE
Q psy16377        339 FLQRLDLRNNSIGYIEDNA-F-LSLYNLHTIYLSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE  414 (1344)
Q Consensus       339 ~L~~L~Ls~n~l~~i~~~~-f-~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  414 (1344)
                      .++.|.+.++.|..+.+.. | ..++.++.++|.+|.+++.  ....+.+++.|+.|+|+.|.+...+...-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            3444555555555443321 1 2345677777777776643  2334566777777777777765433221124567777


Q ss_pred             EEccCCCCC--ccchhhcCCCCccEEEccCCCCCccC--cchhcC-CCCCcEEEcccCCCC---CCCcccccCCCCccEE
Q psy16377        415 LDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIE--NGSFKN-LQQLTDLRLVDNNIG---NLSSGMLYELPSLEVL  486 (1344)
Q Consensus       415 L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~--~~~~~~-l~~L~~L~L~~n~l~---~l~~~~~~~l~~L~~L  486 (1344)
                      |-|.+..+.  .....+..+|.++.|.++.|.+....  ...... -+.+++|.+..|...   ++. ..-.-+|++..+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~-~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN-KLSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH-hHHhhcccchhe
Confidence            777777654  44455667777777777777433211  111111 123444444444321   000 001235677777


Q ss_pred             EcCCCcCccccc-ccccCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCCCc
Q psy16377        487 NLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       487 ~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      -+..|.+..... ..+...+.+..|.|+.+++.+..  ..+.++++|..|.++++.+.
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            777777765533 34556677777888888877654  35667788888888877765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.68  E-value=3.6e-05  Score=60.18  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=17.0

Q ss_pred             ccceeeccccccccccCccccCCCCCCEEEccCCCCccc
Q psy16377        850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF  888 (1344)
Q Consensus       850 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~  888 (1344)
                      +|++|+|++|+|+.+++ .+..+++|++|+|++|+|+.+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCC
Confidence            34444444444444433 244445555555555554443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.66  E-value=3.2e-05  Score=60.47  Aligned_cols=39  Identities=41%  Similarity=0.504  Sum_probs=22.1

Q ss_pred             ccceeecccccccccCcccccCccccceeecccccccccc
Q psy16377        826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA  865 (1344)
Q Consensus       826 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~  865 (1344)
                      +|++|+|++|+|+.+++ .|.+|++|+.|+|++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCc
Confidence            45566666666666544 4556666666666666666554

...

>KOG4579|consensus

Probab=97.61  E-value=6e-06  Score=78.94  Aligned_cols=90  Identities=28%  Similarity=0.400  Sum_probs=43.5

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      ...|+..+|++|.+..+|.. .-...+.++.|+|++|.|+++ |..++.++.|+.|+++.|.+...|.-++. +.+|-.|
T Consensus        52 ~~el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~-L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAP-LIKLDML  128 (177)
T ss_pred             CceEEEEecccchhhhCCHH-Hhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHH-HHhHHHh
Confidence            34455555555555555443 222333455555555555554 33455555555555555555544443322 4445555


Q ss_pred             EcccCcccccChh
Q psy16377        270 YAQKNSLVELSRG  282 (1344)
Q Consensus       270 ~L~~n~l~~l~~~  282 (1344)
                      +..+|.+..++..
T Consensus       129 ds~~na~~eid~d  141 (177)
T KOG4579|consen  129 DSPENARAEIDVD  141 (177)
T ss_pred             cCCCCccccCcHH
Confidence            5555544444443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.54  E-value=8.6e-05  Score=79.01  Aligned_cols=159  Identities=19%  Similarity=0.231  Sum_probs=82.0

Q ss_pred             hcCCCCccEEEccCCCCCccCcc----hhcCCCCCcEEEcccCCCCCCCcccc-------------cCCCCccEEEcCCC
Q psy16377        429 LSELPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDNNIGNLSSGML-------------YELPSLEVLNLSKN  491 (1344)
Q Consensus       429 l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~-------------~~l~~L~~L~Ls~n  491 (1344)
                      +..||.|+..+||+|-+....+.    .++.-+.|+.|.|++|.++.+..+-+             .+-|.|+++....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            44556666666666655443322    23344556666666666544432221             23467777777777


Q ss_pred             cCccccc----ccccCCCccceEeccccCCCC--hh----hHhhcCCCCcEEEcCCCCCccccCC----CcC--CCccEE
Q psy16377        492 KIHQIEI----GTFEKNKRLAAIRLDSNFLTD--IN----GVFTYLAQLLWLNLSENHLVWFDYA----MVP--GNLKWL  555 (1344)
Q Consensus       492 ~i~~~~~----~~~~~l~~L~~L~L~~n~l~~--l~----~~~~~l~~L~~L~Ls~n~l~~~~~~----~lp--~~L~~L  555 (1344)
                      ++..-+.    ..|.....|+.+.+..|.|..  +.    ..+..+.+|+.|||.+|-++.....    .+|  +.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            7654332    123334567777777776652  11    2345667777777777766532211    112  135566


Q ss_pred             EcCCCcCCCCCcccc-----ccCCCcccEEECCCCcc
Q psy16377        556 DIHGNYISSLNNYYE-----IKDGLSIKNLDASHNRI  587 (1344)
Q Consensus       556 ~Ls~n~l~~l~~~~~-----l~~~~~L~~L~Ls~N~l  587 (1344)
                      .+.+|-++.-+....     -...++|..|-..+|.+
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            666665554432111     11134555555555544

>KOG4341|consensus

Probab=97.48  E-value=6.6e-06  Score=92.57  Aligned_cols=256  Identities=18%  Similarity=0.167  Sum_probs=116.3

Q ss_pred             CCCcccEEECCCCC-CCCCCCCccCCCCCCCCEEEccCC-CCCCcChh-hhcCCCCccEEEeeCCC-CCC-CChhhhcCC
Q psy16377        189 GGMDLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENN-EISQIAPN-AFVALSSLRILNISSNH-LVS-LPEGLFSSC  263 (1344)
Q Consensus       189 ~l~~L~~LdLs~n~-l~~l~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~Ls~n~-l~~-l~~~~f~~l  263 (1344)
                      .++++++|++.++. ++...-.+.-..+++|+.|+|..| .++...-. --.++++|++|+++++. +.+ --...+.++
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            36777777777764 322111111245677788877774 34433222 22356778888877774 221 011234566


Q ss_pred             CCCcEEEcccCcccccChhhh----cCCCCCCEEEccCCCC-CCCCCCcccccCCCcccEEEccCCCCCccccccccCCC
Q psy16377        264 RDISEIYAQKNSLVELSRGLF----HKLEQLLVLDLSSNHL-SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV  338 (1344)
Q Consensus       264 ~~L~~L~L~~n~l~~l~~~~~----~~l~~L~~L~Ls~n~l-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  338 (1344)
                      ..++.+.+.+|.  +.+...+    ..+.-+..+++..+.. +... ....-.++..|+.|..+++.....  ..+    
T Consensus       242 ~~l~~~~~kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d--~~l----  312 (483)
T KOG4341|consen  242 KELEKLSLKGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITD--EVL----  312 (483)
T ss_pred             hhhhhhhhcccc--cccHHHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCch--HHH----
Confidence            666666665542  1221111    2333444555444432 2100 011112344555555554432110  000    


Q ss_pred             cccEEEecCCCccccchhhhcCCCCccEEEccCCcc-cccccccc-cCCCceeEEEccCCcCCCCC--hhhhcCCCCCcE
Q psy16377        339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI-HHITAHLF-NGLYVLSKLTLSNNLLVNID--SKAFKNCSALKE  414 (1344)
Q Consensus       339 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~  414 (1344)
                                      ...-.++++|+.|.+++++. +......+ .+++.|+.+++.++......  ...-.+|+.|+.
T Consensus       313 ----------------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  313 ----------------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             ----------------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence                            00112334444444444431 11111111 23445555555554322111  111234566666


Q ss_pred             EEccCCCCCc------cchhhcCCCCccEEEccCCCC-CccCcchhcCCCCCcEEEcccCCC
Q psy16377        415 LDLSSNAIVE------IPSALSELPFLKTLDLGENQI-SKIENGSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       415 L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l  469 (1344)
                      |.+++|.+..      +...-..+..|+.+.|+++.. ++..-..+..+++|+.+++.+++-
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            6666654321      112223456677777777753 333344556677777777776654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.41  E-value=0.00057  Score=79.62  Aligned_cols=137  Identities=16%  Similarity=0.218  Sum_probs=78.2

Q ss_pred             ccCCCCccEEEcCCCcCcccccccccCCCccceEecccc-CCCChhhHhhcCCCCcEEEcCCC-CCccccCCCcCCCccE
Q psy16377        477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN-FLTDINGVFTYLAQLLWLNLSEN-HLVWFDYAMVPGNLKW  554 (1344)
Q Consensus       477 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~Ls~n-~l~~~~~~~lp~~L~~  554 (1344)
                      +..+.+++.|++++|.++.++  .+  ..+|+.|.+++| .++.+|+.+  ..+|+.|++++| .+     ..+|.+|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L-----~sLP~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI-----SGLPESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc-----cccccccce
Confidence            344677888888888777664  22  245888888764 455666544  256777777777 44     246777777


Q ss_pred             EEcCCCcCCCCCccccccCCCcccEEECCCCc-cc-ccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCC
Q psy16377        555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNR-IL-EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAND  632 (1344)
Q Consensus       555 L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~-l~-~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~  632 (1344)
                      |+++++....++.   +.  .+|+.|.+.+++ .. ...+..+|.+|+.|++++|..... |..+-  .+|+.|+++.+.
T Consensus       117 L~L~~n~~~~L~~---LP--ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        117 LEIKGSATDSIKN---VP--NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL-PEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             EEeCCCCCccccc---Cc--chHhheeccccccccccccccccCCcccEEEecCCCcccC-ccccc--ccCcEEEecccc
Confidence            7777665444332   11  256667664432 11 111234666777777776654422 22221  356666665543

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.38  E-value=7.7e-05  Score=60.79  Aligned_cols=37  Identities=30%  Similarity=0.725  Sum_probs=29.9

Q ss_pred             CcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377        907 NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP  945 (1344)
Q Consensus       907 Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~  945 (1344)
                      |||.|||+ +.||+.|+++ ...+.+...++|..|....
T Consensus         1 NP~~CdC~-l~~~~~w~~~-~~~~~~~~~~~C~~P~~~~   37 (51)
T smart00082        1 NPFICDCE-LRWLLRWLQA-NEHLQDPVSLRCASPSSLR   37 (51)
T ss_pred             CCccCcCC-chHHHHHHHh-CCccCCCCCCEeCCcHHHH
Confidence            89999999 7999999987 4455566789999886543

>KOG4341|consensus

Probab=97.32  E-value=3.2e-05  Score=87.20  Aligned_cols=292  Identities=18%  Similarity=0.164  Sum_probs=132.6

Q ss_pred             CCCEEEccCCCCCCcC--hhhhcCCCCccEEEeeCCCCCCCChh----hhcCCCCCcEEEcccC-cccccChh-hhcCCC
Q psy16377        217 RLQNLHLENNEISQIA--PNAFVALSSLRILNISSNHLVSLPEG----LFSSCRDISEIYAQKN-SLVELSRG-LFHKLE  288 (1344)
Q Consensus       217 ~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~----~f~~l~~L~~L~L~~n-~l~~l~~~-~~~~l~  288 (1344)
                      .|+.|.+.++.-.+..  -....+++++++|++.++.  .+...    +-..|++|+.|++..| .++...-. .-..++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            4666666665433321  1233456777777777764  22222    2245777777777774 44433222 335677


Q ss_pred             CCCEEEccCCC-CCCCCCCcccccCCCcccEEEccCCCCCccccccc----cCCCcccEEEecCCC-ccccchh-hhcCC
Q psy16377        289 QLLVLDLSSNH-LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNS-IGYIEDN-AFLSL  361 (1344)
Q Consensus       289 ~L~~L~Ls~n~-l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l~~L~~L~Ls~n~-l~~i~~~-~f~~l  361 (1344)
                      +|++|+++.+. +++..+ ...+.++..++.+.+.+|.-...  +.+    +.+..+-++++..+. ++..... .-..+
T Consensus       217 kL~~lNlSwc~qi~~~gv-~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGV-QALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hHHHhhhccCchhhcCcc-hHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            88888888775 332111 23345556666665555432211  111    122334444444443 2222111 11234


Q ss_pred             CCccEEEccCCcc-cccccc-cccCCCceeEEEccCCc-CCCCChhhh-cCCCCCcEEEccCCCCC---ccchhhcCCCC
Q psy16377        362 YNLHTIYLSENRI-HHITAH-LFNGLYVLSKLTLSNNL-LVNIDSKAF-KNCSALKELDLSSNAIV---EIPSALSELPF  434 (1344)
Q Consensus       362 ~~L~~L~Ls~n~l-~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~  434 (1344)
                      ..|+.|..+++.- ++..-. .-.+..+|+.|.+..|+ +++.....+ .++..|+.+++..+...   ++...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            5566666655432 111111 11344556666665554 222221112 12445555555555433   12222234455


Q ss_pred             ccEEEccCCCC-CccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc-cccccccCCCccceEec
Q psy16377        435 LKTLDLGENQI-SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ-IEIGTFEKNKRLAAIRL  512 (1344)
Q Consensus       435 L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L  512 (1344)
                      |+.|.++.|.. ++.....+.                    ..-..+..|+.+.+++++... .....+..+++|+.+++
T Consensus       374 lr~lslshce~itD~gi~~l~--------------------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHLS--------------------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL  433 (483)
T ss_pred             hccCChhhhhhhhhhhhhhhh--------------------hccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence            55555554431 111100110                    011234556666666664332 22234455667777777


Q ss_pred             cccCCC---ChhhHhhcCCCCcEE
Q psy16377        513 DSNFLT---DINGVFTYLAQLLWL  533 (1344)
Q Consensus       513 ~~n~l~---~l~~~~~~l~~L~~L  533 (1344)
                      -++...   .+...-..+++++..
T Consensus       434 ~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  434 IDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             echhhhhhhhhHHHHhhCccceeh
Confidence            666422   122333456665544

>KOG3665|consensus

Probab=97.29  E-value=0.00012  Score=92.47  Aligned_cols=110  Identities=28%  Similarity=0.415  Sum_probs=78.2

Q ss_pred             CCCCEEEccCCCCC--ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377        126 RELQVLNISSSNIK--SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL  203 (1344)
Q Consensus       126 ~~L~~L~Ls~n~i~--~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l  203 (1344)
                      .+|++||+++...-  ..+...-..||+|++|.+.+-.+..-.   |..             -|.++++|..||+|++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d---F~~-------------lc~sFpNL~sLDIS~TnI  185 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD---FSQ-------------LCASFPNLRSLDISGTNI  185 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh---HHH-------------HhhccCccceeecCCCCc
Confidence            58999999886432  222233345899999999886554322   211             166789999999999999


Q ss_pred             CCCCCCccCCCCCCCCEEEccCCCCCC-cChhhhcCCCCccEEEeeCCCCCC
Q psy16377        204 RTLGDYSGITKFRRLQNLHLENNEISQ-IAPNAFVALSSLRILNISSNHLVS  254 (1344)
Q Consensus       204 ~~l~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~  254 (1344)
                      +.+.   +++++++|+.|.+.+-.+.. ..-..+.+|++|++||+|......
T Consensus       186 ~nl~---GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  186 SNLS---GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             cCcH---HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence            8883   68999999999988766654 222456788999999999875443

>KOG2123|consensus

Probab=97.09  E-value=3e-05  Score=82.66  Aligned_cols=80  Identities=30%  Similarity=0.374  Sum_probs=60.4

Q ss_pred             CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccC-ccccCCCCCCEEE
Q psy16377        801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQ  879 (1344)
Q Consensus       801 ~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~  879 (1344)
                      .+.+.|++-++.+..|.  ....++.|++|.||-|+|+.+.+  |..+++|++|||..|.|.+++. .-+.++|+|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            34555666666666652  34567888899999999988876  7889999999999999998876 4455677777777


Q ss_pred             ccCCC
Q psy16377        880 LDGNR  884 (1344)
Q Consensus       880 L~~N~  884 (1344)
                      |..|.
T Consensus        95 L~ENP   99 (388)
T KOG2123|consen   95 LDENP   99 (388)
T ss_pred             hccCC
Confidence            77774

>KOG3665|consensus

Probab=97.03  E-value=0.00024  Score=89.85  Aligned_cols=110  Identities=19%  Similarity=0.329  Sum_probs=62.3

Q ss_pred             CCCCCEEEccCCCCCccC-hhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377        125 LRELQVLNISSSNIKSIS-DDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL  203 (1344)
Q Consensus       125 l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l  203 (1344)
                      +|+|++|.+++-.+..-. .....++++|..||+++.+++.+..                   .+.+++|+.|.+.+=.+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G-------------------IS~LknLq~L~mrnLe~  207 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG-------------------ISRLKNLQVLSMRNLEF  207 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH-------------------HhccccHHHHhccCCCC
Confidence            566666666654333211 1234456666666666666665422                   23366666666665555


Q ss_pred             CCCCCCccCCCCCCCCEEEccCCCCCCcC------hhhhcCCCCccEEEeeCCCCC
Q psy16377        204 RTLGDYSGITKFRRLQNLHLENNEISQIA------PNAFVALSSLRILNISSNHLV  253 (1344)
Q Consensus       204 ~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~l~  253 (1344)
                      ..-.....+-+|++|+.||+|........      -+.-..||+|+.||.|++.+.
T Consensus       208 e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  208 ESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             CchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            54333224566777777777765443321      122235789999999987655

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=96.58  E-value=0.0022  Score=64.95  Aligned_cols=46  Identities=35%  Similarity=0.583  Sum_probs=34.4

Q ss_pred             HHHhhhheeeeeeecccccCCccchhH--HHHHHHhc--ccEEEEecccc
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEAS--RRVILVLTKNF 1128 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~s--rr~i~vls~~f 1128 (1344)
                      ++|+.||++|+|+|+||++++||..|.  +.+.....  .++|+++-..-
T Consensus        50 ~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v   99 (141)
T PF01582_consen   50 EAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDV   99 (141)
T ss_dssp             HHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS
T ss_pred             HhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccC
Confidence            688999999999999999999998876  33333333  36676665443

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>KOG2123|consensus

Probab=96.35  E-value=0.00031  Score=75.14  Aligned_cols=84  Identities=23%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             CCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChh-hhcCCCCCCEE
Q psy16377        215 FRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG-LFHKLEQLLVL  293 (1344)
Q Consensus       215 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L  293 (1344)
                      +.+.++|++.+|.+.++  ....+++.|++|.||-|+|+++.+  |..|++|++|+|..|.|..+..- .+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            44566777777777776  234567888888888888877765  67788888888888877766542 34788888888


Q ss_pred             EccCCCCCC
Q psy16377        294 DLSSNHLSS  302 (1344)
Q Consensus       294 ~Ls~n~l~~  302 (1344)
                      +|..|.-.+
T Consensus        94 WL~ENPCc~  102 (388)
T KOG2123|consen   94 WLDENPCCG  102 (388)
T ss_pred             hhccCCccc
Confidence            888887554

>TIGR00864 PCC polycystin cation channel protein

Probab=96.08  E-value=0.0031  Score=87.31  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=52.1

Q ss_pred             EecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCc
Q psy16377        627 DIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGST  706 (1344)
Q Consensus       627 dL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~  706 (1344)
                      ||++|+|+.++...|.     ...+|..+.|.+|||.|||.+.||....+..       ...+.+.+.+.|..|..  ++
T Consensus         1 DLSnN~LstLp~g~F~-----~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~-------~v~v~~~~~i~CasP~~--Lr   66 (2740)
T TIGR00864         1 DISNNKISTIEEGICA-----NLCNLSEIDLSGNPFECDCGLARLPRWAEEK-------GVKVRQPEAALCAGPGA--LA   66 (2740)
T ss_pred             CCCCCcCCccChHHhc-----cCCCceEEEeeCCccccccccHHHHHHHHhc-------CccccCCcccCCCCChH--HC
Confidence            3455555555554442     2235566677899999999999987642211       11233456778987753  45


Q ss_pred             cccccccCCCCCcCCCC
Q psy16377        707 HLPASEAAPSQYLCPYD  723 (1344)
Q Consensus       707 ~~~l~~~~~~~~~c~~~  723 (1344)
                      +.++.++.+.++.|..+
T Consensus        67 G~~L~~l~~~d~~C~~~   83 (2740)
T TIGR00864        67 GQPLLGIPLLDSGCDEE   83 (2740)
T ss_pred             CCCcccCCcccCCCCCc
Confidence            56777888888887544

Note: this model has been restricted to the amino half because for technical reasons.

>KOG2739|consensus

Probab=95.98  E-value=0.0036  Score=67.47  Aligned_cols=101  Identities=24%  Similarity=0.308  Sum_probs=67.3

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC--CCCCcChhhhcCCCCccEEEeeCCCCCC---CChhhhcCCC
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN--EISQIAPNAFVALSSLRILNISSNHLVS---LPEGLFSSCR  264 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~---l~~~~f~~l~  264 (1344)
                      +..|+.|++.+..++.+.   .+..+++|+.|.++.|  ++.+-.+-....+++|++|++++|++..   +.+  ...+.
T Consensus        42 ~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~  116 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELE  116 (260)
T ss_pred             ccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhc
Confidence            456777777777777665   3677889999999999  6655544445566999999999998763   222  34556


Q ss_pred             CCcEEEcccCccccc---ChhhhcCCCCCCEEEc
Q psy16377        265 DISEIYAQKNSLVEL---SRGLFHKLEQLLVLDL  295 (1344)
Q Consensus       265 ~L~~L~L~~n~l~~l---~~~~~~~l~~L~~L~L  295 (1344)
                      +|..|++.+|..+.+   -..+|.-+++|+.||-
T Consensus       117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            667777777654432   2344555666666643

>KOG2739|consensus

Probab=95.97  E-value=0.0046  Score=66.72  Aligned_cols=106  Identities=25%  Similarity=0.433  Sum_probs=51.0

Q ss_pred             CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377        126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT  205 (1344)
Q Consensus       126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~  205 (1344)
                      ..|+.|.+.+..++.+..  |-.+++|+.|.++.|.........+.               ...+++|++|++++|++..
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl---------------~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL---------------AEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh---------------hhhCCceeEEeecCCcccc
Confidence            344444455444444332  34566677777776643322111110               1114666666666666654


Q ss_pred             CCCCccCCCCCCCCEEEccCCCCCCcC---hhhhcCCCCccEEEee
Q psy16377        206 LGDYSGITKFRRLQNLHLENNEISQIA---PNAFVALSSLRILNIS  248 (1344)
Q Consensus       206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls  248 (1344)
                      +.....+..+.+|..|++.+|..+...   ...|.-+++|++|+-.
T Consensus       106 lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  106 LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             ccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            333334555566666666665544321   1223334555555433

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.96  E-value=0.0082  Score=43.68  Aligned_cols=32  Identities=41%  Similarity=0.925  Sum_probs=27.8

Q ss_pred             CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCcc
Q psy16377        743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT  780 (1344)
Q Consensus       743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~  780 (1344)
                      .||..|+|.      ...|+|++.++.++|..||.+++
T Consensus         1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCS------GTAVDCSGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEEC------CCEeEeCCCCcCccCCCCCcccc
Confidence            489999997      45899999999999999998754

>KOG1947|consensus

Probab=95.93  E-value=0.002  Score=80.17  Aligned_cols=62  Identities=27%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             CCCceeEEEccCCc-CCCCChhhhcC-CCCCcEEEccCCC-CC--ccchhhcCCCCccEEEccCCCC
Q psy16377        384 GLYVLSKLTLSNNL-LVNIDSKAFKN-CSALKELDLSSNA-IV--EIPSALSELPFLKTLDLGENQI  445 (1344)
Q Consensus       384 ~l~~L~~L~Ls~n~-l~~~~~~~~~~-l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~Ls~n~i  445 (1344)
                      .+.+|+.|+++.+. +++..-..+.. |++|+.|.+.+|. ++  .+-.....++.|++|++++|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34455555555554 44433333332 5566666655554 33  2323334556666666666543

>KOG1947|consensus

Probab=95.30  E-value=0.0038  Score=77.61  Aligned_cols=17  Identities=35%  Similarity=0.694  Sum_probs=10.0

Q ss_pred             hcCCCCCcEEEccCCCC
Q psy16377        406 FKNCSALKELDLSSNAI  422 (1344)
Q Consensus       406 ~~~l~~L~~L~Ls~n~l  422 (1344)
                      +..++.|+.+.+..+..
T Consensus       358 ~~~~~~l~~~~l~~~~~  374 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGI  374 (482)
T ss_pred             HhcCCCcchhhhhhhhc
Confidence            44566666666666553

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=95.23  E-value=0.031  Score=56.41  Aligned_cols=42  Identities=38%  Similarity=0.623  Sum_probs=31.7

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHHH-----hcccEEEEec
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE-----ASRRVILVLT 1125 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~-----~srr~i~vls 1125 (1344)
                      ++++.|+++|+|+|++|++++||..|. ..+.+     ..+++|-|+-
T Consensus        50 ~~i~~s~~~i~vlS~~~~~S~w~~~E~-~~a~~~~~~~~~~~iIPI~~   96 (140)
T smart00255       50 EAIEKSRIAIVVLSPNYAESEWCLDEL-VAALENALEEGGLRVIPIFY   96 (140)
T ss_pred             HHHHHCcEEEEEECcccccChhHHHHH-HHHHHHHHHcCCCeEEEEEE
Confidence            578889999999999999999999855 33332     4456665553

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.57  E-value=0.034  Score=38.66  Aligned_cols=28  Identities=39%  Similarity=1.035  Sum_probs=21.8

Q ss_pred             CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCC
Q psy16377        743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP  776 (1344)
Q Consensus       743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip  776 (1344)
                      .||..|.|.      ...|+|++.+++++|..||
T Consensus         1 ~CP~~C~C~------~~~V~C~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCS------GLTVDCSGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEE------TTEEEETTSS-SSS-STS-
T ss_pred             CcCCCCEec------CCEeECCCCCCCccCCCCc
Confidence            488999997      5589999999999999876

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.06  E-value=0.052  Score=35.40  Aligned_cols=16  Identities=31%  Similarity=0.339  Sum_probs=6.9

Q ss_pred             cceeeccccccccccC
Q psy16377        851 LSELYLQENRIEYIAN  866 (1344)
Q Consensus       851 L~~L~L~~N~l~~i~~  866 (1344)
                      |++|+|++|+|+.||+
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            3444444444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=92.82  E-value=0.029  Score=45.51  Aligned_cols=50  Identities=30%  Similarity=0.535  Sum_probs=33.0

Q ss_pred             CcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcC
Q psy16377        660 NPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC  720 (1344)
Q Consensus       660 Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c  720 (1344)
                      |||.|+|.+.||.....        +...+.+.+.+.|..|....   .++.++.++++.|
T Consensus         1 NP~~CdC~l~~~~~w~~--------~~~~~~~~~~~~C~~P~~~~---~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQ--------ANEHLQDPVSLRCASPSSLR---GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHH--------hCCccCCCCCCEeCCcHHHH---hHHHcCCHhhCCC
Confidence            89999999999986432        11234455689998775522   3466666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.65  E-value=0.056  Score=35.27  Aligned_cols=21  Identities=33%  Similarity=0.447  Sum_probs=13.1

Q ss_pred             ccceeecccccccccCcccccC
Q psy16377        826 SLQVLHLENNLITHFYGYEFDN  847 (1344)
Q Consensus       826 ~L~~L~Ls~N~l~~l~~~~f~~  847 (1344)
                      +|++|||++|+|+.+++. |.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT
T ss_pred             CccEEECCCCcCEeCChh-hcC
Confidence            366677777777766554 544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3678|consensus

Probab=92.00  E-value=2.3  Score=49.21  Aligned_cols=70  Identities=20%  Similarity=0.407  Sum_probs=51.0

Q ss_pred             hHHHHHHHhcccEEEEecccch--------hhhhhHHHHHHHHHHHHhcCCceEEEEEec----CCCcccchhhHHHHhh
Q psy16377       1108 DFLIEAAEASRRVILVLTKNFL--------QTEWSRSDFRSAIHEALTTKTHKLVLVEEN----IVPEAESDIELKPYLK 1175 (1344)
Q Consensus      1108 ~~i~~~i~~srr~i~vls~~f~--------~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~----~~~~~~~~~~l~~~l~ 1175 (1344)
                      +.+...|...|..|+|+||+.+        ...|-+.|+..|+.     ..+++|+|+-.    |-+++.++.+++...|
T Consensus       656 ssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe-----~~KNIiPI~D~aFE~Pt~ed~iPnDirmi~k  730 (832)
T KOG3678|consen  656 SSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFE-----HQKNIIPIFDTAFEFPTKEDQIPNDIRMITK  730 (832)
T ss_pred             HHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHH-----hcCCeeeeecccccCCCchhcCcHHHHHHHh
Confidence            3578888888889999988876        34699999998886     45788898754    2345567777765543


Q ss_pred             hccEEEeC
Q psy16377       1176 SCMKIRWG 1183 (1344)
Q Consensus      1176 ~~~~l~w~ 1183 (1344)
                       ..-++|-
T Consensus       731 -yNGvKWv  737 (832)
T KOG3678|consen  731 -YNGVKWV  737 (832)
T ss_pred             -ccCeeee
Confidence             4458995

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.45  E-value=0.095  Score=35.73  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=9.8

Q ss_pred             cccceeeccccccccccCccc
Q psy16377        849 EKLSELYLQENRIEYIANGTF  869 (1344)
Q Consensus       849 ~~L~~L~L~~N~l~~i~~~~f  869 (1344)
                      ++|+.|+|++|+|+.|+++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344444444444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.45  E-value=0.095  Score=35.73  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=9.8

Q ss_pred             cccceeeccccccccccCccc
Q psy16377        849 EKLSELYLQENRIEYIANGTF  869 (1344)
Q Consensus       849 ~~L~~L~L~~N~l~~i~~~~f  869 (1344)
                      ++|+.|+|++|+|+.|+++.|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            344444444444444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.57  E-value=0.21  Score=34.01  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=17.7

Q ss_pred             CCccceeecccccccccCccccc
Q psy16377        824 LSSLQVLHLENNLITHFYGYEFD  846 (1344)
Q Consensus       824 l~~L~~L~Ls~N~l~~l~~~~f~  846 (1344)
                      +++|+.|+|++|+|+.++++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46778888888888888777765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.57  E-value=0.21  Score=34.01  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=17.7

Q ss_pred             CCccceeecccccccccCccccc
Q psy16377        824 LSSLQVLHLENNLITHFYGYEFD  846 (1344)
Q Consensus       824 l~~L~~L~Ls~N~l~~l~~~~f~  846 (1344)
                      +++|+.|+|++|+|+.++++.|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46778888888888888777765

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.07  E-value=0.25  Score=29.94  Aligned_cols=15  Identities=47%  Similarity=0.733  Sum_probs=5.7

Q ss_pred             CCCEEEccCCCCccc
Q psy16377        874 SLQVLQLDGNRLKSF  888 (1344)
Q Consensus       874 ~L~~L~L~~N~l~~~  888 (1344)
                      +|+.|+|++|+|+.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344455555544443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.87  E-value=0.21  Score=30.27  Aligned_cols=15  Identities=33%  Similarity=0.510  Sum_probs=5.6

Q ss_pred             ccceeeccccccccc
Q psy16377        850 KLSELYLQENRIEYI  864 (1344)
Q Consensus       850 ~L~~L~L~~N~l~~i  864 (1344)
                      +|+.|+|++|+|+++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444544444443

...

>KOG4308|consensus

Probab=88.54  E-value=0.011  Score=71.84  Aligned_cols=17  Identities=24%  Similarity=0.360  Sum_probs=8.3

Q ss_pred             hcCCCccceeecccccc
Q psy16377        821 FNGLSSLQVLHLENNLI  837 (1344)
Q Consensus       821 f~~l~~L~~L~Ls~N~l  837 (1344)
                      +...+.+.+++++.|..
T Consensus       400 ~~~~~~l~~~~l~~n~~  416 (478)
T KOG4308|consen  400 LASNEKLEILDLSLNSL  416 (478)
T ss_pred             hhhcchhhhhhhhcCcc
Confidence            33444555555555533

>KOG4308|consensus

Probab=86.87  E-value=0.024  Score=68.94  Aligned_cols=83  Identities=28%  Similarity=0.384  Sum_probs=37.9

Q ss_pred             eeEEEccCCcCCCCC----hhhhcCCCCCcEEEccCCCCC-----ccchhhc----CCCCccEEEccCCCCCccCc----
Q psy16377        388 LSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIV-----EIPSALS----ELPFLKTLDLGENQISKIEN----  450 (1344)
Q Consensus       388 L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~----~l~~L~~L~Ls~n~i~~~~~----  450 (1344)
                      +++|++..|.++...    ...+.....++.++++.|.+.     .++..+.    ...++++|.+.+|.++....    
T Consensus       146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~  225 (478)
T KOG4308|consen  146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD  225 (478)
T ss_pred             HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence            344444444444322    223334556666666666553     1222222    35556666666665553211    


Q ss_pred             chhcCCCC-CcEEEcccCCCC
Q psy16377        451 GSFKNLQQ-LTDLRLVDNNIG  470 (1344)
Q Consensus       451 ~~~~~l~~-L~~L~L~~n~l~  470 (1344)
                      ..+...+. +..|++..|.++
T Consensus       226 ~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  226 EVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHHhccchhhHHHHHHhcCcc
Confidence            12222333 444555555553

>KOG0473|consensus

Probab=86.22  E-value=0.035  Score=58.51  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377        821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR  900 (1344)
Q Consensus       821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~  900 (1344)
                      .......+.||++.|++..+.. -|+-++.|..|+|+.|+|..++. .|..+..+..+++.+|.++..|.. +...+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~-n~s~~t~~~rl~~sknq~~~~~~-d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGK-NFSILTRLVRLDLSKNQIKFLPK-DAKQQRETVNAASHKNNHSQQPKS-QKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHhhcc-chHHHHHHHHHhccHhhHhhChh-hHHHHHHHHHHHhhccchhhCCcc-ccccCCcc
Confidence            3344555666666666665533 46666677777777777766644 344455566666677776666654 55566677


Q ss_pred             EEEecCCcc
Q psy16377        901 KVYLGNNPF  909 (1344)
Q Consensus       901 ~L~l~~Np~  909 (1344)
                      ++++-+|||
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            777777775

>KOG3864|consensus

Probab=85.69  E-value=0.18  Score=52.60  Aligned_cols=91  Identities=20%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccc-cCCCCccEEEcCCC-cCccccccc
Q psy16377        424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGML-YELPSLEVLNLSKN-KIHQIEIGT  500 (1344)
Q Consensus       424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~  500 (1344)
                      ++|.....-..++.+|-+++.|..+.-..+.+++.++.|.+.+|.- ..---+.+ .-.++|+.|++++| +|++-....
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            4444333334577888888888877777778888888888887754 11111111 13578889999888 566666566


Q ss_pred             ccCCCccceEeccc
Q psy16377        501 FEKNKRLAAIRLDS  514 (1344)
Q Consensus       501 ~~~l~~L~~L~L~~  514 (1344)
                      +..+++|+.|.|.+
T Consensus       172 L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHhhhhHHHHhcC
Confidence            66777777776654

>PLN03194 putative disease resistance protein; Provisional

Probab=83.35  E-value=1.5  Score=45.61  Aligned_cols=40  Identities=10%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHHHhcccEEEEe
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVL 1124 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~srr~i~vl 1124 (1344)
                      .||+.|+..|+|+|+||..+.||..| +..+++. ++.|+-|
T Consensus        76 ~AIeeSri~IvVfS~~Ya~S~WCLdE-L~~I~e~-~~~ViPI  115 (187)
T PLN03194         76 SAIRNCKVGVAVFSPRYCESYFCLHE-LALIMES-KKRVIPI  115 (187)
T ss_pred             HHHHhCeEEEEEECCCcccchhHHHH-HHHHHHc-CCEEEEE
Confidence            58899999999999999999999875 4555554 4444433

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=83.34  E-value=1.5  Score=43.55  Aligned_cols=51  Identities=16%  Similarity=0.207  Sum_probs=34.7

Q ss_pred             hHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCc
Q psy16377       1108 DFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE 1163 (1344)
Q Consensus      1108 ~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~ 1163 (1344)
                      ..|.+.|+.|..+||+++++--.++|..+|++.|+.     ....+|.|.+....+
T Consensus        62 ~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~-----~~~~Ii~V~~~~~~~  112 (130)
T PF08937_consen   62 RKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK-----KGKPIIGVYLPGLKD  112 (130)
T ss_dssp             HHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT-----T---EEEEETT--SG
T ss_pred             HHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH-----CCCCEEEEECCCCCC
Confidence            568999999999999999999899999999998877     667888887665543

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=83.09  E-value=0.5  Score=44.66  Aligned_cols=42  Identities=33%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHHHhcccEEEEec
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLT 1125 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~srr~i~vls 1125 (1344)
                      ++++.|..+|+++|++|++++||..| +..|-+..+++|-|+-
T Consensus        45 ~~i~~s~~~i~~~S~~~~~s~~~~~E-~~~a~~~~~~iipv~~   86 (102)
T PF13676_consen   45 RAIERSDCVIVLLSPNYLKSPWCRFE-LGAAWKRGKPIIPVRL   86 (102)
T ss_dssp             HCCTTEEEEEEEEEHHHHCTHHHHHH-HHHHHCTSESEEEEEC
T ss_pred             HHHHhCCEEEEEECcccccChHHHHH-HHHHHHCCCEEEEEEE
Confidence            45677889999999999999999996 5555555555666653

>KOG0473|consensus

Probab=81.73  E-value=0.056  Score=57.03  Aligned_cols=94  Identities=21%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCC
Q psy16377        138 IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRR  217 (1344)
Q Consensus       138 i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~  217 (1344)
                      ++.+|...+......+.||++.|++..+...                  ++-++.|..||++.|.+..+|..  +.....
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n------------------~s~~t~~~rl~~sknq~~~~~~d--~~q~~e   89 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKN------------------FSILTRLVRLDLSKNQIKFLPKD--AKQQRE   89 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccc------------------hHHHHHHHHHhccHhhHhhChhh--HHHHHH
Confidence            3444544455555666666666655433221                  11145566666666666666553  555566


Q ss_pred             CCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCC
Q psy16377        218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHL  252 (1344)
Q Consensus       218 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l  252 (1344)
                      ++.+++..|..+.. |.++..++.++++++.++.+
T Consensus        90 ~~~~~~~~n~~~~~-p~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen   90 TVNAASHKNNHSQQ-PKSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             HHHHHhhccchhhC-CccccccCCcchhhhccCcc
Confidence            66666666655554 55666666666666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1344
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-23
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-19
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-19
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		2e-09
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		3e-07
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		2e-19
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		3e-09
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		3e-07
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-18
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-18
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		6e-18
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		3e-17
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		2e-11
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		4e-10
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		8e-17
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-16
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-08
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		6e-08
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-16
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-11
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-16
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		8e-12
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-15
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-14
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-14
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		2e-14
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-14
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		5e-14
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		8e-14
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-13
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		7e-05
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		3e-13
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		4e-13
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		2e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		2e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		7e-12
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		2e-12
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		7e-12
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		6e-12
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-12
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		1e-09
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		6e-06
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		5e-11
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		6e-11
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		1e-08
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-10
3g39_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		1e-10
3g3a_A	178	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-10
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-10
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		7e-10
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		3e-08
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		7e-10
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		3e-08
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		8e-10
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		4e-08
3twi_D	179	Variable Lymphocyte Receptor Recognition Of The Imm		8e-10
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		8e-10
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		4e-08
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		9e-10
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-09
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		1e-09
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		5e-08
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-09
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-09
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		6e-09
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		7e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-09
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		6e-09
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		7e-09
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		1e-08
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		9e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-08
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-06
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-08
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-06
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-08
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-06
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-08
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		3e-06
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		5e-08
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		6e-08
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		6e-08
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-05
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		6e-08
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		7e-08
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		7e-08
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		3e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		7e-08
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		8e-08
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-05
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		9e-08
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		9e-08
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		9e-08
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		1e-07
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		1e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		1e-07
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		2e-07
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		6e-07
2z66_A	306	Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A		4e-07
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		4e-07
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-06
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		2e-06
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		3e-06
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		4e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		8e-06
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
1o77_A	146	Crystal Structure Of The C713s Mutant Of The Tir Do		1e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
1fyx_A	149	Crystal Structure Of P681h Mutant Of Tir Domain Of		8e-05
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		1e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		2e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		2e-04
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		7e-04

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 104/189 (55%), Gaps = 6/189 (3%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   V+C  Q  ++VP  IP   T++ L+ N+ K++PN VF    ++
Sbjct: 1   CPSRCSC------SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSL 54
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             LY+  ++++ + N  FN L+SL  L+L  N +       FD L +L EL L  N+++ 
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           + +G F+ L  L+ L+L  N+LKS      +  + L+ ++L +NP+ C+C  ++ L  WI
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWI 174
Query: 924 IDNSNKVKD 932
             +S  V++
Sbjct: 175 NKHSGVVRN 183

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 34/208 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC   +      + C+ + +++VP  IP  AT + L+ N  +++P+ VF      
Sbjct: 1   CPSRCSCSGTE------IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF------ 48
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                             + L+ L  L L  N I       FD L KL+ LYL EN+++ 
Sbjct: 49  ------------------DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           + NG F+ L  L+ L LD N+LKS      +  + L+K++L  NP+ CSC  +  L  W+
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 150
Query: 924 IDNSNKVKDGLDISCVIDESSPPIRKEI 951
             NS K +     S     S  P+R  I
Sbjct: 151 NKNSQKEQGSAKCS----GSGKPVRSII 174

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           LDL+NN I  I+D  F +L NLHT+ L  N+I  I+   F  L  L +L LS N L  + 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 403 SKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
            K  K    L+EL +  N I ++  S  + L  +  ++LG N +  S IENG+F+ +++L
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
           + +R+ D NI  +  G+    PSL  L+L  NKI +++  + +    LA + L  N ++ 
Sbjct: 174 SYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 520 I-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL---KWLDI---HGNYISSL 565
           + NG       L  L+L+ N LV      VPG L   K++ +   H N IS++
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
           L+ +  S   + ++P  L   P    LDL  N+I++I++G FKNL+ L  L L++N I  
Sbjct: 33  LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 472 LSSGMLYELPSLEVLNLSKN----------------KIHQIEIGTFEKN-----KRLAAI 510
           +S G    L  LE L LSKN                ++H+ EI    K+      ++  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 511 RLDSNFLTDI---NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
            L +N L      NG F  + +L ++ +++ ++      + P +L  L + GN I+ + +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKV-D 208
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLAR 625
              +K   ++  L  S N I  +   S+ N+  +  L +NNN +  V P    D   +  
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQV 267
Query: 626 VDIYANDITKL 636
           V ++ N+I+ +
Sbjct: 268 VYLHNNNISAI 278

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C C      +  VV CS+  +  VP  +P D   + L  N    I +  F   KN
Sbjct: 24  VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEK-LSELYLQENRI 861
           + +L + N++I  I    F  L  L+ L+L  N +        + + K L EL + EN I
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEI 133
Query: 862 EYIANGTFNALISLQVLQLDGNRLKS 887
             +    FN L  + V++L  N LKS
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKS 159

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           LDL+NN I  I+D  F +L NLHT+ L  N+I  I+   F  L  L +L LS N L  + 
Sbjct: 57  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 403 SKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
            K  K    L+EL +  N I ++  S  + L  +  ++LG N +  S IENG+F+ +++L
Sbjct: 117 EKMPK---TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
           + +R+ D NI  +  G+    PSL  L+L  NKI +++  + +    LA + L  N ++ 
Sbjct: 174 SYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 520 I-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL---KWLDI---HGNYISSL 565
           + NG       L  L+L+ N LV      VPG L   K++ +   H N IS++
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLV-----KVPGGLADHKYIQVVYLHNNNISAI 278

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 31/251 (12%)
Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
           L+ +  S   + ++P  L   P    LDL  N+I++I++G FKNL+ L  L L++N I  
Sbjct: 33  LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 472 LSSGMLYELPSLEVLNLSKN----------------KIHQIEIGTFEKN-----KRLAAI 510
           +S G    L  LE L LSKN                ++H+ EI    K+      ++  +
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 511 RLDSNFLTDI---NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
            L +N L      NG F  + +L ++ +++ ++      + P +L  L + GN I+ + +
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKV-D 208
Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEV--LFINNNLIKSVKPHTFFDKSNLAR 625
              +K   ++  L  S N I  +   S+ N+  +  L +NNN +  V P    D   +  
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQV 267
Query: 626 VDIYANDITKL 636
           V ++ N+I+ +
Sbjct: 268 VYLHNNNISAI 278

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C C      +  VV CS+  +  VP  +P D   + L  N    I +  F   KN
Sbjct: 24  VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEK-LSELYLQENRI 861
           + +L + N++I  I    F  L  L+ L+L  N +        + + K L EL + EN I
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTLQELRVHENEI 133
Query: 862 EYIANGTFNALISLQVLQLDGNRLKS 887
             +    FN L  + V++L  N LKS
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLKS 159

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 7/185 (3%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   VDC  ++ ++VP  IP +A  +YL  N    +   VF    N+
Sbjct: 13  CPSQCSC------SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINL 66
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             LY+ ++Q+  +    F+ L+ L VL L  N +T      FD L  L EL++  N++  
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           +  G    L  L  L LD N+LKS      +  S L   YL  NP+ C C  +  L+ W+
Sbjct: 127 LPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185
Query: 924 IDNSN 928
            D+++
Sbjct: 186 ADHTS 190

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 28/211 (13%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
            C+C    N     VDC  + + +VP  IP D   + L      T+ +  F G   +  L
Sbjct: 9   GCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 807 YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
            ++ +Q++ +    F+ L+ L  L L NN +       FD+L +L +LYL  N+++ + +
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 867 GTFNALISLQVLQLDGNRLKSF--RAFD---------LNTNSM-------------LRKV 902
           G F+ L  L+ L+L+ N+L+S    AFD         L+TN +             L+ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Query: 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
            L  N F CS   +  L  WI +NSNKVKDG
Sbjct: 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDG 215

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 30/212 (14%)
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
            C+C    N     VDC  + + +VP  IP D   + L      T+ +  F G   +  L
Sbjct: 9   GCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWL 64
Query: 807 YVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN 866
            ++ +Q++ +    F+ L+ L  L L NN +       FD+L +L +LYL  N+++ + +
Sbjct: 65  NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124
Query: 867 GTFNALISLQVLQLDGNRLKSF--RAFD---------LNTNSM-------------LRKV 902
           G F+ L  L+ L+L+ N+L+S    AFD         L+TN +             L+ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Query: 903 YLGNNPFSCS-CATLQELQTWIIDNSNKVKDG 933
            L  N F CS C TL  L  WI +NSNKVKDG
Sbjct: 185 TLFGNQFDCSRCETLY-LSQWIRENSNKVKDG 215

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 106/201 (52%), Gaps = 5/201 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           L+L  N+I  I+ + F  L++L  + L  N I  I    FNGL  L+ L L +N L  I 
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
           S AF+  S L+EL L +N I  IPS A + +P L  LDLGE  ++  I  G+F+ L  L 
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
            L L   NI ++ +  L  L  LE L +S N   +I  G+F     L  + + ++ ++ I
Sbjct: 200 YLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Query: 521 -NGVFTYLAQLLWLNLSENHL 540
               F  LA L+ LNL+ N+L
Sbjct: 258 ERNAFDGLASLVELNLAHNNL 278

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 144/314 (45%), Gaps = 27/314 (8%)
Query: 374 IHHIT--AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           +HH T  A L   +Y+ +++ +    +    S   +NC ++       + +V     LSE
Sbjct: 9   VHHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSE 68
Query: 432 LPF-----LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
           +P       + L+L EN I  I+  +F++L  L  L+L  N+I  +  G    L SL  L
Sbjct: 69  VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL 128
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLSE-NHLVWFD 544
            L  N +  I  G FE   +L  + L +N +  I    F  +  L+ L+L E   L +  
Sbjct: 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS 188
Query: 545 YAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVE 600
                G  NLK+L++    I  + N   +   + ++ L+ S N   EI   S    +S++
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMPNLTPL---VGLEELEMSGNHFPEIRPGSFHGLSSLK 245
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD---LTALRLKPVPQNKTLPEFYL 657
            L++ N+ +  ++ + F   ++L  +++  N+++ L     T LR         L E +L
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY--------LVELHL 297
Query: 658 GGNPFDCDCSMDWL 671
             NP++CDC + WL
Sbjct: 298 HHNPWNCDCDILWL 311

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC    N  + VV C+ + +S VP  IP +  ++ L  N  + I    F    ++
Sbjct: 46  CPSVCSC---SNQFSKVV-CTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHL 101
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             L +  + I  I    FNGL+SL  L L +N +T      F+ L KL EL+L+ N IE 
Sbjct: 102 EVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161
Query: 864 IANGTFNALISLQVLQLDGNRLKSF 888
           I +  FN + SL  ++LD   LK  
Sbjct: 162 IPSYAFNRVPSL--MRLDLGELKKL 184

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 108/248 (43%), Gaps = 55/248 (22%)
Query: 741 EMTCPKN---CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATH---------------- 781
           E  C K+   CSC    N N N VDCS ++++ +P  IP D                   
Sbjct: 2   EALCKKDGGVCSC----NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAF 57
Query: 782 --------VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE 833
                   +YL+ N  +T+P  +F   KN+ +L+V +++++ +    F+ L +L  L L+
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 834 NNLITHF---------------YGYE---------FDNLEKLSELYLQENRIEYIANGTF 869
            N +                   GY          FD L  L EL L  N+++ +  G F
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 870 NALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
           + L  L+ L+LD N+LK       ++   L+ + L  NP+ C+C  +  +  W+   +++
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADE 237
Query: 930 VKDGLDIS 937
              G+D +
Sbjct: 238 GLGGVDTA 245

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 105/201 (52%), Gaps = 5/201 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           L+L  N I  I+ N+F  L +L  + LS N I  I    FNGL  L+ L L +N L  I 
Sbjct: 69  LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
           + AF   S LKEL L +N I  IPS A + +P L+ LDLGE  ++S I  G+F+ L  L 
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
            L L   N+  + +  L  L  L+ L+LS N +  I  G+F+    L  + +  + +  I
Sbjct: 189 YLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Query: 521 -NGVFTYLAQLLWLNLSENHL 540
               F  L  L+ +NL+ N+L
Sbjct: 247 ERNAFDNLQSLVEINLAHNNL 267

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 127/286 (44%), Gaps = 60/286 (20%)
Query: 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
           E+P  +S     + L+L ENQI  I+  SFK+L+                         L
Sbjct: 57  EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRH------------------------L 90
Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL--LWL-NLSENH 539
           E+L LS+N I  IEIG F     L  + L  N LT I NG F YL++L  LWL N     
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150
Query: 540 LVWFDYAMVPGNLKWLDIHG----NYISSLNNYYEIKDGLS-IKNLDASHNRILEISELS 594
           +  + +  +P +L+ LD+      +YIS         +GLS ++ L+ +   + EI  L+
Sbjct: 151 IPSYAFNRIP-SLRRLDLGELKRLSYISE-----GAFEGLSNLRYLNLAMCNLREIPNLT 204
Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL------------- 641
               ++ L ++ N + +++P +F    +L ++ +  + I  ++  A              
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 642 -RLKPVPQNKTLP-----EFYLGGNPFDCDCSMDWLPIINNNTSPS 681
             L  +P +   P       +L  NP++C+C + WL     + +PS
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPS 310

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
           TCP  CSC    N  + V+ C  + +  VP  I  +   + L  N  + I  + F   ++
Sbjct: 34  TCPSVCSC---SNQFSKVI-CVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRH 89
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           +  L ++ + I  I    FNGL++L  L L +N +T      F  L KL EL+L+ N IE
Sbjct: 90  LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 863 YIANGTFNALISLQVLQL 880
            I +  FN + SL+ L L
Sbjct: 150 SIPSYAFNRIPSLRRLDL 167

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           L+L+ NSI  I  + F  L +L  + LS+N +  I    FNGL  L+ L L +N L  + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
           ++AF+  S L+EL L +N I  IPS A + +P L+ LDLGE  ++  I   +F+ L  L 
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL-DSNFLTD 519
            L L   N+ ++ +  L  L  LE L LS N++  I  G+F+    L  + L  +   T 
Sbjct: 160 YLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 520 INGVFTYLAQLLWLNLSENHLV 541
               F  L  L  LNLS N+L+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLM 239

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
           +CP  CSC    N  + V+ C+ ++++ VP  IP++  ++ L  N+ + I    F   ++
Sbjct: 5   SCPAACSC---SNQASRVI-CTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           +  L ++ + +  I    FNGL SL  L L +N +T      F+ L KL EL+L+ N IE
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 863 YIANGTFNALISLQVLQL 880
            I +  FN + SL+ L L
Sbjct: 121 SIPSYAFNRVPSLRRLDL 138

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/202 (35%), Positives = 106/202 (52%), Gaps = 5/202 (2%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           L+L+ NSI  I  + F  L +L  + LS+N +  I    FNGL  L+ L L +N L  + 
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVP 99
Query: 403 SKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLT 460
           ++AF+  S L+EL L +N I  IPS A + +P L+ LDLGE  ++  I   +F+ L  L 
Sbjct: 100 TQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR 159
Query: 461 DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL-DSNFLTD 519
            L L   N+ ++ +  L  L  LE L LS N++  I  G+F+    L  + L  +   T 
Sbjct: 160 YLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATI 217
Query: 520 INGVFTYLAQLLWLNLSENHLV 541
               F  L  L  LNLS N+L+
Sbjct: 218 ERNAFDDLKSLEELNLSHNNLM 239

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
           +CP  CSC    N  + V+ C+ ++++ VP  IP++  ++ L  N+ + I    F   ++
Sbjct: 5   SCPAACSC---SNQASRVI-CTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH 60
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           +  L ++ + +  I    FNGL SL  L L +N +T      F+ L KL EL+L+ N IE
Sbjct: 61  LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE 120
Query: 863 YIANGTFNALISLQVLQL 880
            I +  FN + SL+ L L
Sbjct: 121 SIPSYAFNRVPSLRRLDL 138

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 76/180 (42%), Gaps = 32/180 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C+C         VV CS + +  +P  IP D T +YLDGN F  +P          
Sbjct: 4   CPTECTCLD------TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKE-------- 49
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
           LS Y                   L ++ L NN I+      F N+ +L  L L  NR+  
Sbjct: 50  LSNY-----------------KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           I   TF+ L SL++L L GN +        N  S L  + +G NP  C C  +Q L  W+
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSDWV 151

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 86/153 (56%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
           T++ L GN  +++PN VF    N+  L +  +Q++ + +  F+ L++L  L+L +N +  
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                FD L  L+EL L  N+++ +  G F+ L  L+ L+L  N+LKS      +  + L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Query: 900 RKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
           + ++L +NP+ C+C  ++ L  WI  +S  V++
Sbjct: 208 QYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 240

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
           + CP  C+C      + N+VDC  + ++ +P  +P   T + L+ NT K IP   F   K
Sbjct: 3   LHCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
            +  + ++N+QI  +    F GL SL  L L  N IT      F+ L  L  L L  N+I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
             +    F  L +L +L L  N+L++      +    ++ ++L  NPF C C
Sbjct: 117 NXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
           VF+  +N++ L ++++   V  N  FNGLSSL+VL +  N+   +F    F  L  L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCA 914
            L + ++E ++   FN+L SLQVL +  N+LKS      +  + L+K++L  NP+ CSC 
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Query: 915 TLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
            +  L  W+  NS K +     S     S  P+R  I
Sbjct: 536 RIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 568

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
           + CP  C+C      + N+VDC  + ++ +P  +P   T + L+ NT K IP   F   K
Sbjct: 3   LHCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYK 56
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
            +  + ++N+QI  +    F GL SL  L L  N IT      F+ L  L  L L  N+I
Sbjct: 57  KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
             +    F  L +L +L L  N+L++      +    ++ ++L  NPF C C
Sbjct: 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 79/144 (54%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
           T++ L GN  +++PN VF    N+  L +  +Q++ + +  F+ L++L  L+L +N +  
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                FD L  L+ L L  N+++ +  G F+ L  L+ L L+ N+LKS      +  + L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Query: 900 RKVYLGNNPFSCSCATLQELQTWI 923
             ++L NNP+ C+C+ +  L  WI
Sbjct: 208 THIWLLNNPWDCACSDILYLSRWI 231

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 109/253 (43%), Gaps = 44/253 (17%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP-----MDATH--------------- 781
           ++CP NC C       +N++ CS+QQ+  VP  +P     +D +H               
Sbjct: 10  VSCPANCLC------ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRL 63
Query: 782 -----VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836
                + L  N    I +  F+   N+  L ++++ +  +    F+ L +L+VL L NN 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123
Query: 837 ITHFYGYEFDNLEKLSELYLQENRI-----EYIANGTFNALISLQVLQLDGNRLKSFRAF 891
           I       F+++ +L +LYL +N+I     E I +G  N L  L +L L  N+LK     
Sbjct: 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG--NKLPKLMLLDLSSNKLKKLPLT 181
Query: 892 DLNTNSMLRK--VYLGNNPFSCSCATLQELQTWIIDNSNKVKD-GLDISCVIDESSPPIR 948
           DL       K  +YL NNP  C C   Q    W     + V D   D+ C+    S  + 
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM---HSKKLH 238
Query: 949 KEIDLNSTTCTEY 961
               L+   C+EY
Sbjct: 239 NIFSLDFFNCSEY 251

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 38/336 (11%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           LDL  N I  +  + F S  +L  + L+EN +  +    FN L+ L  L L +N L  I 
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQISKIENGSFKNLQQLTD 461
              F   S L +LD+S N IV +   +  +L  LK+L++G+N +  I + +F  L  L  
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
           L L   N+ ++ +  L  L  L VL L    I+ I   +F++  RL  + +         
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI--------- 207
Query: 522 GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN----NYYEIKDGLSI 577
                           +H  + D  M P  L  L++    I+  N     Y  ++  + +
Sbjct: 208 ----------------SHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250
Query: 578 KNLDASHNRI--LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
           + L+ S+N I  +E S L     ++ + +    +  V+P+ F   + L  +++  N +T 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310
Query: 636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
           L+ +            L    L  NP  CDC + W+
Sbjct: 311 LEESVFH-----SVGNLETLILDSNPLACDCRLLWV 341

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 28/168 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK-- 801
           CP  C C    +     V C  ++   VP  IP +   + L  N  KT+    F      
Sbjct: 3   CPPRCEC----SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58
Query: 802 ----------------------NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
                                 N+ +L + ++++++I    F GLS+L  L +  N I  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118
Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
              Y F +L  L  L + +N + YI++  F+ L SL+ L L+   L S
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGR 800
           + CP+ C C          VDCS Q+++ +P  IP     + L+ N F  +    +F   
Sbjct: 3   LACPEKCRC------EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKL 56
Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
             +  +  +N++I  I    F G S +  + L +N + +     F  LE L  L L+ NR
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116
Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
           I  + N +F  L S+++L L  N++ +      +T   L  + L  NPF+C+C  L  L 
Sbjct: 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY-LAWLG 175
Query: 921 TWI 923
            W+
Sbjct: 176 EWL 178

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 3/201 (1%)
Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-LV 399
           QR+ L  N I Y+   +F S  NL  ++L  N +  I A  F GL +L +L LS+N  L 
Sbjct: 34  QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
            +D   F+    L  L L    + E+ P     L  L+ L L +N +  + + +F++L  
Sbjct: 94  VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
           LT L L  N I ++       L SL+ L L +N + ++    F    RL  + L +N L+
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 519 DING-VFTYLAQLLWLNLSEN 538
            +   V   L  L +L L++N
Sbjct: 214 MLPAEVLVPLRSLQYLRLNDN 234

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 28/169 (16%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C+++    T+   C +Q +  VP  IP  +  ++L GN    +P   F   +N+
Sbjct: 1   CPGACVCYNEPKVTTS---CPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNL 57
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
             L++                         +N+Q+ V+   TF GL  L  LHL+   + 
Sbjct: 58  TILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ 117
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
                 F  L  L  LYLQ+N ++ + + TF  L +L  L L GNR+ S
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS 166

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482
           V IP+A S+  FL       N+IS +   SF+  + LT L L  N +  + +     L  
Sbjct: 27  VGIPAA-SQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 80
Query: 483 LEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
           LE L+LS N ++  ++  TF    RL  + LD   L ++  G+F  LA L +L L +N L
Sbjct: 81  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 541 VWF--DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598
                D     GNL  L +HGN ISS+          + + L                +S
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL----------------HS 177
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG 658
           ++ L ++ N +  V PH F D   L  + ++AN+++ L   A  L P+   + L    L 
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPL---RALQYLRLN 232
Query: 659 GNPFDCDC 666
            NP+ CDC
Sbjct: 233 DNPWVCDC 240

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C+++    T+   C +Q +  VP  IP  +  ++L GN    +P   F   +N+
Sbjct: 1   CPGACVCYNEPKVTTS---CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 57
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
             L++                         +N+Q+  +   TF+GL  L  LHL+   + 
Sbjct: 58  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 117
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAF 891
                 F  L  L  LYLQ+N ++ + + TF  L +L  L L GNR+ S   RAF
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS 482
           V IP+A S+  FL       N+IS +   SF+  + LT L L  N +  + +     L  
Sbjct: 28  VGIPAA-SQRIFLHG-----NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 483 LEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHL 540
           LE L+LS N ++  ++  TF    RL  + LD   L ++  G+F  LA L +L L +N L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 541 VWF--DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598
                D     GNL  L +HGN ISS+          + + L                +S
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL----------------HS 178
Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG 658
           ++ L ++ N +  V PH F D   L  + ++AN+++ L   A  L P+   + L    L 
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPL---RALQYLRLN 233
Query: 659 GNPFDCDC 666
            NP+ CDC
Sbjct: 234 DNPWVCDC 241

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 30/175 (17%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C+++    T+   C +Q +  VP  IP  +  ++L GN    +P   F   +N+
Sbjct: 2   CPGACVCYNEPKVTTS---CPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58
Query: 804 LSLYV-------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
             L++                         +N+Q+  +   TF+GL  L  LHL+   + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAF 891
                 F  L  L  LYLQ+N ++ + + TF  L +L  L L GNR+ S   RAF
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 115/499 (23%), Positives = 203/499 (40%), Gaps = 106/499 (21%)
Query: 479 ELPS-LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF--LTDINGVFTYLAQLLWLNL 535
           ELP+ +  ++LS N I ++   +F + + L  ++++     L   N  F  L+ L+ L L
Sbjct: 27  ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 536 SENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL 593
             N  +  +     G  NL+ L                   L+  NLD +   +L  +  
Sbjct: 87  DYNQFLQLETGAFNGLANLEVLT------------------LTQCNLDGA---VLSGNFF 125
Query: 594 SIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR---VDIYANDITKL-----------DLT 639
               S+E+L + +N IK ++P +FF   N+ R   +D+  N +  +             T
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFF--LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183
Query: 640 ALRLKPVPQNKTLPEFYLG----GNPFDCDCSMDWLPIINNNTSPSMERQYPKIM---DL 692
            LRL  +   + + E++LG    GNPF  + S+  L +  N    SM +++   +    +
Sbjct: 184 LLRLSSITL-QDMNEYWLGWEKCGNPFK-NTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241
Query: 693 DNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFH 752
            +++   +Y+ GS+    +   P                   F     E +  K C    
Sbjct: 242 QSLILSNSYNMGSSFGHTNFKDPDN-----------------FTFKGLEASGVKTC---- 280
Query: 753 DQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQ 812
                    D S+ +I  +                  K++ +H      ++  L +  ++
Sbjct: 281 ---------DLSKSKIFAL-----------------LKSVFSHF----TDLEQLTLAQNE 310
Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
           I  I +  F GL+ L  L+L  N +       F+NL+KL  L L  N I  + + +F  L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370
Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
            +L+ L LD N+LKS      +  + L+K++L  NP+ CSC  +  L  W+  NS K + 
Sbjct: 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 430
Query: 933 GLDISCVIDESSPPIRKEI 951
               S     S  P+R  I
Sbjct: 431 ----SAKCSGSGKPVRSII 445

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 135/290 (46%), Gaps = 28/290 (9%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           ++++ F+ L  L+ L+L  N I  I D AF  L NL  + LS N +  + +  F GL  +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE---IPS---------ALSELPFL- 435
           + + L  N +  I  + FK    L+ LDL  NA+     IPS          L  LP + 
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKIN 400
Query: 436 ---KTLDLGENQISKIENGSF-KNLQQLTDLRLVDNNIGNLSSGML-YELPSLEVLNLSK 490
                + L EN++  ++   F   +  L  L L  N   + S      E PSLE L L +
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 491 NKIH-----QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFD 544
           N +      ++    FE    L  + L+ N+L  +  GVF++L  L  L+L+ N L    
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520
Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
           +  +P NL+ LDI  N + + N   ++   LS+  LD +HN+ +   ELS
Sbjct: 521 HNDLPANLEILDISRNQLLAPNP--DVFVSLSV--LDITHNKFICECELS 566

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 45/307 (14%)
Query: 410 SALKELDLSSNAIVEIPSALSE-LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           S+++ LDLS   +  + S + E L  LK L+L  N+I+KI + +F  L  L  L L  N 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL 325
Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN------G 522
           +G L S   Y LP +  ++L KN I  I+  TF+  ++L  + L  N LT I+       
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD 385
Query: 523 VFTYLAQLLWL----------NLSENHLVWFD---YAMVPGNLKWLDIHGNYISSLNNYY 569
           +F    +L+ L          +LSEN L   D   + +   +L+ L ++ N  SS +   
Sbjct: 386 IFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSN 622
              +  S++ L    N +    E  +   V       +VL++N+N + S+ P  F   + 
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 623 LARVDIYANDITKL---DLTA-LRLKPVPQNKTL---PEFYLG-------GNPFDCDCSM 668
           L  + + +N +T L   DL A L +  + +N+ L   P+ ++         N F C+C +
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565
Query: 669 ----DWL 671
               +WL
Sbjct: 566 STFINWL 572

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%)
Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
           H+ L      ++ + VF   K++  L +  ++I  I ++ F GL +LQVL+L  NL+   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329
Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS 887
           Y   F  L K++ + LQ+N I  I + TF  L  LQ L L  N L +
Sbjct: 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC  DQ     +V+C   ++++VP  IP D                         
Sbjct: 6   CPSQCSC--DQT----LVNCQNIRLASVPAGIPTDK------------------------ 35
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                                   Q L L NN IT      FD+L  L +LY   N++  
Sbjct: 36  ------------------------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           I  G F+ L  L  L L+ N LKS      +    L  +YL NNP+ C C  +  L+ W+
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWV 131
Query: 924 IDNSNKV 930
            D+++ V
Sbjct: 132 ADHTSIV 138

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           LDL+NN I  +  + F  L +L+ + L  N+I  I    F+ L  L KL +S N LV I 
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP 118
Query: 403 SKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKTLDLGENQI--SKIENGSFKNLQQL 459
                  S+L EL +  N I ++P  + S L  +  +++G N +  S  E G+F  L +L
Sbjct: 119 PNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174
Query: 460 TDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
             LR+ +  +    +G+  +LP +L  L+L  NKI  IE+    +  +L  + L  N + 
Sbjct: 175 NYLRISEAKL----TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 519 DI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
            I NG  ++L  L  L+L  N L     + VP  L  L +
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKL-----SRVPAGLPDLKL 265

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C      +  VV CS+  +  VP  I  D T + L  N    +    F G +++
Sbjct: 27  CPFGCHC------HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHL 80
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
            +L + N++I  I  + F+ L  LQ L++  N   H      +    L EL + +NRI  
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKN---HLVEIPPNLPSSLVELRIHDNRIRK 137
Query: 864 IANGTFNALISLQVLQLDGNRLKS 887
           +  G F+ L ++  +++ GN L++
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLEN 161

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 54/182 (29%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
           M CP  CSC      +   VDCS + +++VP  IP                         
Sbjct: 1   MACPSQCSC------SGTTVDCSGKSLASVPTGIP------------------------- 29
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
                                  ++ QVL+L +N IT      FD L +L+ L L  N++
Sbjct: 30  -----------------------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
             +  G F+ L  L  L L+ N+LKS      +    L  ++L NNP+ C+C+ +  L  
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSR 126
Query: 922 WI 923
           WI
Sbjct: 127 WI 128

>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 54/182 (29%)
Query: 742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
           M CP  CSC      +   VDCS + +++VP  IP                         
Sbjct: 1   MACPSQCSC------SGTTVDCSGKSLASVPTGIP------------------------- 29
Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
                                  ++ QVL+L +N IT      FD L +L+ L L  N++
Sbjct: 30  -----------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
             +  G F+ L  L  L L+ N+LKS      +    L  ++L NNP+ C+C+ +  L  
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSR 126
Query: 922 WI 923
           WI
Sbjct: 127 WI 128

>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In Complex With A Protein Antigen Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 54/180 (30%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   VDCS + +++VP  IP                           
Sbjct: 11  CPSQCSC------SGTTVDCSGKSLASVPTGIP--------------------------- 37
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                                ++ QVL+L +N IT      FD L +L+ L L  N++  
Sbjct: 38  ---------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           +  G F+ L  L  L L+ N+LKS      +    L  ++L NNP+ C+C+ +  L  WI
Sbjct: 77  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWI 136

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 132/285 (46%), Gaps = 35/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 99  DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
           +L+ S+N +   D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 155 QLSFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
                              + G+  +L  LTDL L +N I NL+   L  L  L  L L 
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N+I  I          L  + L+ N L DI+ + + L  L +L L  N++         
Sbjct: 270 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 326
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
             L+ L  + N +S +++   + +   I  L A HN+I +++ L+
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 368

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           + + +F     LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L
Sbjct: 45  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
            KL      L ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I 
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
            I           TDLR            +L+++P     L+LS N ++ I+ G F K  
Sbjct: 165 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 202
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
           RL  + LD+N L  + +G+F  L  L  +WL+
Sbjct: 203 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           V+D S  +I T+        +H+    L GN  +++    F G  ++  L    + +  +
Sbjct: 58  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 117
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
            N     L +L+ L++ +NLI  F   E F NL  L  L L  N+I+             
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                          +I  G F   I L+ L LD N+LKS      +  + L+K++L  N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           P+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 237 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 276

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           + + +F     LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L
Sbjct: 44  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
            KL      L ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I 
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
            I           TDLR            +L+++P     L+LS N ++ I+ G F K  
Sbjct: 164 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 201
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
           RL  + LD+N L  + +G+F  L  L  +WL+
Sbjct: 202 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           V+D S  +I T+        +H+    L GN  +++    F G  ++  L    + +  +
Sbjct: 57  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
            N     L +L+ L++ +NLI  F   E F NL  L  L L  N+I+             
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                          +I  G F   I L+ L LD N+LKS      +  + L+K++L  N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           P+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 236 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 275

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           + + +F     LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L
Sbjct: 44  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
            KL      L ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I 
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
            I           TDLR            +L+++P     L+LS N ++ I+ G F K  
Sbjct: 164 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 201
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
           RL  + LD+N L  + +G+F  L  L  +WL+
Sbjct: 202 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 233

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           V+D S  +I T+        +H+    L GN  +++    F G  ++  L    + +  +
Sbjct: 57  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 116
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
            N     L +L+ L++ +NLI  F   E F NL  L  L L  N+I+             
Sbjct: 117 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                          +I  G F   I L+ L LD N+LKS      +  + L+K++L  N
Sbjct: 177 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 235
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           P+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 236 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 275

>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The Immunodominant Glycoprotein Of Bacillus Anthracis Spores Length = 179

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 54/187 (28%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   V+C E+ +++VP  IP                           
Sbjct: 13  CPSQCSC------SGTTVNCQERSLASVPAGIP--------------------------- 39
Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                                ++ QVLHL  N IT      FD+L +L+ L L  N++  
Sbjct: 40  ---------------------TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           +  G F+ L  L  L L  N+LKS      +    L  +YL NNP+ C C+ +  L+ WI
Sbjct: 79  LPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILYLKNWI 138
Query: 924 IDNSNKV 930
           + +++ V
Sbjct: 139 VQHASIV 145

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           + + +F     LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
            KL      L ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I 
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
            I           TDLR            +L+++P     L+LS N ++ I+ G F K  
Sbjct: 163 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 200
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
           RL  + LD+N L  + +G+F  L  L  +WL+
Sbjct: 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           V+D S  +I T+        +H+    L GN  +++    F G  ++  L    + +  +
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
            N     L +L+ L++ +NLI  F   E F NL  L  L L  N+I+             
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                          +I  G F   I L+ L LD N+LKS      +  + L+K++L  N
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           P+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 235 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 274

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 131/285 (45%), Gaps = 35/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 99  DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
           +L  S+N +   D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 155 QLNFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
                              + G+  +L  LTDL L +N I NL+   L  L  L  L L 
Sbjct: 212 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N+I  I          L  + L+ N L DI+ + + L  L +L L  N++         
Sbjct: 270 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 326
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
             L+ L  + N +S +++   + +   I  L A HN+I +++ L+
Sbjct: 327 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 368

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 22/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 99  DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
           +L+ S+N +   D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 155 QLSFSSNQVT--DLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 211
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
                 L  L +L L  N + ++  G L  L +L  L+L+ N+I    +       +L  
Sbjct: 212 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 265
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           ++L +N +++I+     L  L  L L+EN L          NL +L ++ N IS ++   
Sbjct: 266 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 324
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
            +     ++ L  S+N++ ++S L+   ++  L   +N I  + P      +NL R+
Sbjct: 325 SLT---KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 373

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           + + +F     LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L
Sbjct: 45  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
            KL      L ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I 
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP-SLEVLNLSKNKIHQIEIGTFEKNK 505
            I           TDLR            +L+++P     L+LS N ++ I+ G F K  
Sbjct: 165 SI---------YCTDLR------------VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEI 202
Query: 506 RLAAIRLDSNFLTDI-NGVFTYLAQL--LWLN 534
           RL  + LD+N L  + +G+F  L  L  +WL+
Sbjct: 203 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 234

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 37/224 (16%)
Query: 760 VVDCSEQQISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           V+D S  +I T+        +H+    L GN  +++    F G  ++  L    + +  +
Sbjct: 58  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL 117
Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYE-FDNLEKLSELYLQENRIE------------- 862
            N     L +L+ L++ +NLI  F   E F NL  L  L L  N+I+             
Sbjct: 118 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Query: 863 ---------------YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                          +I  G F   I L+ L LD N+LKS      +  + L+K++L  N
Sbjct: 178 PLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 236
Query: 908 PFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           P+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 237 PWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 276

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 130/285 (45%), Gaps = 36/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 159
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
           +L+  N +    D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 160 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
                              + G+  +L  LTDL L +N I NL+   L  L  L  L L 
Sbjct: 216 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N+I  I          L  + L+ N L DI+ + + L  L +L L  N++         
Sbjct: 274 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 330
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
             L+ L  + N +S +++   + +   I  L A HN+I +++ L+
Sbjct: 331 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 372

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 129/285 (45%), Gaps = 36/285 (12%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 99  DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKI- 448
           +L   N +    D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 155 QLNFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 210
Query: 449 -------------------ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
                              + G+  +L  LTDL L +N I NL+   L  L  L  L L 
Sbjct: 211 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 268
Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N+I  I          L  + L+ N L DI+ + + L  L +L L  N++         
Sbjct: 269 ANQISNIS--PLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSL 325
Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS 594
             L+ L  + N +S +++   + +   I  L A HN+I +++ L+
Sbjct: 326 TKLQRLFFYNNKVSDVSSLANLTN---INWLSAGHNQISDLTPLA 367

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 143/327 (43%), Gaps = 42/327 (12%)
Query: 329 IDAKTFKDLVFLQ-RLDLRNNSIGY-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
           ID+    D VF    +D++   + +  ED   ++L N   +    + +  + A L +   
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFED---ITLNNQKIVTFKNSTMRKLPAALLDSFR 75
Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
            +  L L++  +  ID+ AF     +++L +  NAI  +P  +                 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV----------------- 118
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
                 F+N+  LT L L  N++ +L  G+ +  P L  L++S N + +IE  TF+    
Sbjct: 119 ------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
           L  ++L SN LT ++   + +  L   N+S N L       +P  ++ LD   N I+ + 
Sbjct: 173 LQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVR 227
Query: 567 NYYEIKDGLSIKNLDASHNRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLAR 625
               ++  L+I  L   HN + + +  L+ P  VEV    N L K +  H F     L R
Sbjct: 228 GPVNVE--LTI--LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLER 282
Query: 626 VDIYANDITKLDLTALRLKPVPQNKTL 652
           + I  N +  L+L     +P+P  K L
Sbjct: 283 LYISNNRLVALNLYG---QPIPTLKVL 306

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 45/97 (46%)
Query: 789 FKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL 848
            + I  + F     +  LY+  + I  +    F  +  L VL LE N ++      F N 
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
            KL+ L +  N +E I + TF A  SLQ LQL  NRL
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 142/297 (47%), Gaps = 23/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 103 DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 158
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
           +L+  N +    D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 159 QLSFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 214
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
                 L  L +L L  N + ++  G L  L +L  L+L+ N+I    +       +L  
Sbjct: 215 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 268
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           ++L +N +++I+     L  L  L L+EN L          NL +L ++ N IS ++   
Sbjct: 269 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 327
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
            +     ++ L  ++N++ ++S L+   ++  L   +N I  + P      +NL R+
Sbjct: 328 SLT---KLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 376

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 31/171 (18%)
Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGR-KN 802
           CP  C C          VDC+ + +  +P  IP+  T + L+ N    I +    GR  +
Sbjct: 2   CPAMCHC------EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH 55
Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           ++ L +  +Q+  I    F G S +Q L L  N I       F  L +L  L L +N+I 
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
            +  G+F  L SL  L L                         +NPF+C+C
Sbjct: 116 CVMPGSFEHLNSLTSLNL------------------------ASNPFNCNC 142

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 23/297 (7%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D     +L  L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L 
Sbjct: 99  DITPLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQ 154
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
           +L   N +    D K   N + L+ LD+SSN + +I S L++L  L++L    NQIS I 
Sbjct: 155 QLNFGNQV---TDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 210
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
                 L  L +L L  N + ++  G L  L +L  L+L+ N+I    +       +L  
Sbjct: 211 --PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS--NLAPLSGLTKLTE 264
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           ++L +N +++I+     L  L  L L+EN L          NL +L ++ N IS ++   
Sbjct: 265 LKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS 323
Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
            +     ++ L  S+N++ ++S L+   ++  L   +N I  + P      +NL R+
Sbjct: 324 SLT---KLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPL-----ANLTRI 372

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 124/264 (46%), Gaps = 15/264 (5%)
Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIE 449
           +T  N+ +  + +    +   ++ L+L+   I EI + A +    ++ L +G N I  + 
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
              F+N+  LT L L  N++ +L  G+ +  P L  L++S N + +IE  TF+    L  
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           ++L SN LT ++   + +  L   N+S N L       +P  ++ LD   N I+ +    
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL---AIPIAVEELDASHNSINVVRGPV 224
Query: 570 EIKDGLSIKNLDASHNRILEIS-ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
            ++  L+I  L   HN + + +  L+ P  VEV    N L K +  H F     L R+ I
Sbjct: 225 NVE--LTI--LKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHPFVKMQRLERLYI 279
Query: 629 YANDITKLDLTALRLKPVPQNKTL 652
             N +  L+L     +P+P  K L
Sbjct: 280 SNNRLVALNLYG---QPIPTLKVL 300

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%)
Query: 792 IPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKL 851
           I  + F     +  LY+  + I  +    F  +  L VL LE N ++      F N  KL
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143
Query: 852 SELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
           + L +  N +E I + TF A  SLQ LQL  NRL
Sbjct: 144 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N++ ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++Q++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N+L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  V
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAV 239

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N++ ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++Q++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N+L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N++ ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++Q++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N+L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N++ ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 92/229 (40%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++Q++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N+L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
           V+C ++ ++ +PP +P D T ++L  N   T      +P      + + R  +  L V+ 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
           +              Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 147/357 (41%), Gaps = 56/357 (15%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           I  +TF  L+ L  LDL    I +I ++ F S + L T+ L+ N +  +     NG   L
Sbjct: 45  IHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSL 104
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF--LKTLDLGENQIS 446
             L L    + N++     N   L+ L L SN I  I     + P   LK LD   N I 
Sbjct: 105 KHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFP-KDFPARNLKVLDFQNNAIH 163
Query: 447 KIENGSFKNLQQLTDLRLVDNN-------IGNLSSGMLYEL-----PSLEVL--NLSKNK 492
            I     ++L+Q  +L L  N        +G   S +   L     P+L V+   L  + 
Sbjct: 164 YISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNST 223
Query: 493 IHQIEIGTFEK---------------NKRLAAIRLDSNFLTDING-VFTYLAQLLWLNLS 536
              + +GTFE                   + ++ L  +  +DI+   F    QL  L+L+
Sbjct: 224 TQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLT 283
Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
             HL       +P  +K L++    + S+N++                +++ +IS  + P
Sbjct: 284 ATHL-----KGLPSGMKGLNLLKKLVLSVNHF----------------DQLCQISAANFP 322
Query: 597 NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
            S+  L+I  N+ K        +K  NL  +D+  NDI   D  +L+LK +   +TL
Sbjct: 323 -SLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
           V+C ++ ++ +PP +P D T ++L  N   T      +P      + + R  +  L V+ 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
           +              Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 818 NQTFNGL--SSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL 875
           N TF GL  S ++   L  + I       F +   L +L L +N I  I +  F  L  L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL 325
Query: 876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
           + L LD N+LKS      +  + L+K++L  NP+ CSC  +  L  W+  NS K +    
Sbjct: 326 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG--- 382
Query: 936 ISCVIDESSPPIRKEI 951
            S     S  P+R  I
Sbjct: 383 -SAKCSGSGKPVRSII 397

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKT------IP----NHVFIGRKNMLSLYVNN 810
           V+C ++ ++ +PP +P D T ++L  N   T      +P      + + R  +  L V+ 
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 811 S--------------QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
           +              Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++ ++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 94  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++ ++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 15  VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 239

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 2/158 (1%)
Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           ++LSEN ++  +         L++L L    L  +          L  LDLS N +  +P
Sbjct: 37  LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG--TLPVLGTLDLSHNQLQSLP 94
Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
                LP L  LD+  N+++ +  G+ + L +L +L L  N +  L  G+L   P LE L
Sbjct: 95  LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 154
Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
           +L+ N + ++  G     + L  + L  N L  I   F
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 54/229 (23%)
Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGN-----TFKTIPNHVFIGRKNM------------ 803
           V+C ++ ++ +PP +P D T ++L  N     +  T+  +  + + N+            
Sbjct: 16  VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 75
Query: 804 -------LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  L L  N  Q   +L QT   L +L VL +  N +T         L +L ELYL
Sbjct: 76  TLPVLGTLDLSHNQLQSLPLLGQT---LPALTVLDVSFNRLTSLPLGALRGLGELQELYL 132
Query: 857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---------------------- 894
           + N ++ +  G       L+ L L  N L    A  LN                      
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Query: 895 -TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV---KDGLDISCV 939
             + +L   +L  NP+ C+C  L   + W+ DN+  V   K G+D+  +
Sbjct: 193 FGSHLLPFAFLHGNPWLCNCEILY-FRRWLQDNAENVYVWKQGVDVKAM 240

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
           + +L  L L  N I     + FD+LE L  +    N++  +  G F  +  L+ L L  N
Sbjct: 146 MRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASN 204
Query: 884 RLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
           +LKS      +  + L+K++L  NP+ CSC  +  L  W+  NS K +     S     S
Sbjct: 205 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GS 260
Query: 944 SPPIRKEI 951
             P+R  I
Sbjct: 261 GKPVRSII 268

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
           L  LDL  N++  + +++F  L  L   +L  N I H+ +H  +GL+ +  L L  +   
Sbjct: 255 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
                  L  ID  +F+    L+ L++  N I  I S                       
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 374
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
                  +L+  P L  L+L +N+ISKIE+ +F  L  L  L L  N IG   +G  +  
Sbjct: 375 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 433
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
           L ++  + LS NK  Q+   +F     L  + L    L +++     F  L  L  L+LS
Sbjct: 434 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 493
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
            N++   +  M+ G   L+ LD+  N ++ L  +       Y +K GLS   I NL+++ 
Sbjct: 494 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 552
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
              + +        ++++ +  N + ++    F ++ +L  +++  N IT ++       
Sbjct: 553 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 610
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
             P  + L E  +  NPFDC C S+ W 
Sbjct: 611 --PAFRNLTELDMRFNPFDCTCESIAWF 636

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 127/529 (24%), Positives = 207/529 (39%), Gaps = 91/529 (17%)
Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE- 431
           ++ HI   L + + VL+   L++N L  +    F   S L  LD   N+I ++   L + 
Sbjct: 15  KLTHIPDDLPSNITVLN---LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI 71
Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           LP LK L+L  N++S+I + +F     LT+L L+ N+I  + S       +L  L+LS N
Sbjct: 72  LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 492 KIHQIEIGT-----------FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
            +   ++GT             KNK LA    +  FL +        + L  L+LS N L
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN--------SSLRKLDLSSNPL 183
Query: 541 VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVE 600
             F     PG  + +   G   + L N  ++   L+ K          E+S  SI N   
Sbjct: 184 KEFS----PGCFQTI---GKLFALLLNNAQLNPHLTEK-------LCWELSNTSIQN--- 226
Query: 601 VLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
            L + NN + +    TF          +   ++T+LDL+   L  V           G  
Sbjct: 227 -LSLANNQLLATSESTF--------SGLKWTNLTQLDLSYNNLHDV-----------GNG 266
Query: 661 PFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC 720
            F    S+ +L +  NN      R +  + +L  +  K  +++ S  L +          
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNI------ 320
Query: 721 PYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT 780
             D   F      E+   D         + F      T +V      +S           
Sbjct: 321 --DDFSFQWLKYLEYLNMDDNNIPSTKSNTF------TGLVSLKYLSLSKT--------- 363
Query: 781 HVYLDGNTFKTIPNHVFI--GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
                  + +T+ N  F+      +L+L +  + I  I N TF+ L  L++L L  N I 
Sbjct: 364 -----FTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIE 418
Query: 839 H-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
               G E+  L  + E+YL  N+   ++  +F  + SLQ L L    LK
Sbjct: 419 QKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALK 467

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
           L  LDL  N++  + +++F  L  L   +L  N I H+ +H  +GL+ +  L L  +   
Sbjct: 260 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
                  L  ID  +F+    L+ L++  N I  I S                       
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 379
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
                  +L+  P L  L+L +N+ISKIE+ +F  L  L  L L  N IG   +G  +  
Sbjct: 380 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 438
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
           L ++  + LS NK  Q+   +F     L  + L    L +++     F  L  L  L+LS
Sbjct: 439 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 498
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
            N++   +  M+ G   L+ LD+  N ++ L  +       Y +K GLS   I NL+++ 
Sbjct: 499 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 557
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
              + +        ++++ +  N + ++    F ++ +L  +++  N IT ++       
Sbjct: 558 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 615
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
             P  + L E  +  NPFDC C S+ W 
Sbjct: 616 --PAFRNLTELDMRFNPFDCTCESIAWF 641

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 167/388 (43%), Gaps = 62/388 (15%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-- 397
           L  LDL  N++  + +++F  L  L   +L  N I H+ +H  +GL+ +  L L  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 398 -------LVNIDSKAFKNCSALKELDLSSNAIVEIPS----------------------- 427
                  L  ID  +F+    L+ L++  N I  I S                       
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369
Query: 428 -------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE- 479
                  +L+  P L  L+L +N+ISKIE+ +F  L  L  L L  N IG   +G  +  
Sbjct: 370 LTNETFVSLAHSP-LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV---FTYLAQLLWLNLS 536
           L ++  + LS NK  Q+   +F     L  + L    L +++     F  L  L  L+LS
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNY-------YEIKDGLS---IKNLDASH 584
            N++   +  M+ G   L+ LD+  N ++ L  +       Y +K GLS   I NL+++ 
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK-GLSHLHILNLESNG 547
Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
              + +        ++++ +  N + ++    F ++ +L  +++  N IT ++       
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG-- 605
Query: 645 PVPQNKTLPEFYLGGNPFDCDC-SMDWL 671
             P  + L E  +  NPFDC C S+ W 
Sbjct: 606 --PAFRNLTELDMRFNPFDCTCESIAWF 631

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 27/166 (16%)
Query: 331 AKTFKDLVFLQRLDLRNNSIGYI-EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           +  F  L  L+ LD +++++  + E + FLSL NL  IYL  +  H   A  FNG+    
Sbjct: 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISHTHTRVA--FNGI---- 464
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE--IPSALSELPFLKTLDLGENQISK 447
                           F   S+L+ L ++ N+  E  +P   +EL  L  LDL + Q+ +
Sbjct: 465 ----------------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508
Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
           +   +F +L  L  L +  NN  +L +     L SL+VL+ S N I
Sbjct: 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
           VF+  +N++ L ++++   V  N  FNGLSSL+VL +  N+   +F    F  L  L+ L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
            L + ++E ++   FN+L SLQVL +  N            L S +  D + N       
Sbjct: 500 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
                  S L  + L  N F+C+C     LQ WI D    + +   + C    D+   P+
Sbjct: 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 618

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           LQ LDL    I  IED A+ SL +L T+ L+ N I  +    F+GL  L KL      L 
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 400 NIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
           ++++    +   LKEL+++ N I   ++P   S L  L+ LDL  N+I  I     + L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
Query: 458 QL 459
           Q+
Sbjct: 174 QM 175

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
           VF+  +N++ L ++++   V  N  FNGLSSL+VL +  N+   +F    F  L  L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
            L + ++E ++   FN+L SLQVL +  N            L S +  D + N       
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
                  S L  + L  N F+C+C     LQ WI D    + +   + C    D+   P+
Sbjct: 536 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 594

>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 29/180 (16%)
Query: 796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSEL 854
           VF+  +N++ L ++++   V  N  FNGLSSL+VL +  N+   +F    F  L  L+ L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 855 YLQENRIEYIANGTFNALISLQVLQLDGNR-----------LKSFRAFDLNTN------- 896
            L + ++E ++   FN+L SLQVL +  N            L S +  D + N       
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240
Query: 897 -------SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI--DESSPPI 947
                  S L  + L  N F+C+C     LQ WI D    + +   + C    D+   P+
Sbjct: 241 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQ-WIKDQRQLLVEVERMECATPSDKQGMPV 299

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 130/329 (39%), Gaps = 35/329 (10%)
Query: 377 ITAHLFNGLYVLS--KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF 434
           I+  +F GL  +S   + L  +   NI S  F   S L+ELDL++  + E+PS L  L  
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLST 302
Query: 435 LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG-NLSSGMLYELPSLEVLNLSKNKI 493
           LK L L  N+   +   S  N   LT L +  N     L +G L  L +L  L+LS + I
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362
Query: 494 HQIEIGTFEKN--KRLAAIRLDSNF-LTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
              +    +      L ++ L  N  L+     F    QL  L+L+   L   D      
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 551 NLKWLDI----HGNYISSLNNYYEIKDGLSIKNLDASH---NRILEISELSIPNSVEVLF 603
           NL  L +    H     S    ++    L   NL  +H     I + + L     +E+L 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 604 INNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL-RLKPVPQNKT-------LPEF 655
           ++   + S+  H F     +  VD+  N +T   + AL  LK +  N         LP  
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL 542
Query: 656 Y----------LGGNPFDCDCS----MDW 670
                      L  NP DC CS    ++W
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIYFLEW 571

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNL 836
           T + +  NTF  +P+      K M  L ++++ I V+   + QT      L+VL + NN 
Sbjct: 416 TSLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT------LEVLDVSNNN 468
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
           +  F  +    L +L ELY+  N+++ + + +   +  L V+++  N+LKS      +  
Sbjct: 469 LDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRL 522
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           + L+K++L  NP+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 523 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 573

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 20/175 (11%)
Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNL 836
           T + +  NTF  +P+      K M  L ++++ I V+   + QT      L+VL + NN 
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEK-MRFLNLSSTGIRVVKTCIPQT------LEVLDVSNNN 442
Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
           +  F  +    L +L ELY+  N+++ + + +   +  L V+++  N+LKS      +  
Sbjct: 443 LDSFSLF----LPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRL 496
Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
           + L+K++L  NP+ CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 547

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 151/673 (22%), Positives = 238/673 (35%), Gaps = 170/673 (25%)
Query: 329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL 388
           I   TF  L+ L  LDL    I ++ ++ F S + L+TI L+ N +  +      G   L
Sbjct: 47  IQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFL 106
Query: 389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQIS 446
             L L+   + N++     N   L+ L L SN I  + +P        LK LD   N I 
Sbjct: 107 KHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIH 165
Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
            I      +L+Q T+L L                      N + N I  IE G F  +K 
Sbjct: 166 YISRKDTNSLEQATNLSL----------------------NFNGNDIKGIEPGAF-ISKI 202
Query: 507 LAAIRLDS--NFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISS 564
             +++     N      G+     Q LWL   E                  D    Y++S
Sbjct: 203 FQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFE------------------DTDDQYLTS 244
Query: 565 LNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLA 624
                            A+   + ++S  SI               +++ H F D S+ +
Sbjct: 245 -----------------ATFEGLCDMSVESI---------------NLQKHRFSDLSS-S 271
Query: 625 RVDIYANDITKLDLTALRLKPVPQN----KTLPEFYLGGNPFDCDCSMDWLPIINNNTSP 680
               +   + +LDLTA  L  +P       +L +  L  N FD  C       IN  + P
Sbjct: 272 TFRCFTR-VQELDLTAAHLNGLPSGIEGMNSLKKLVLNANSFDQLCQ------INAASFP 324
Query: 681 SMERQYPK----IMDLDNVVCKMTYSRGSTHLPASEAAPS-------------QYLC--- 720
           S+   Y K     +DL     +   +     L  S+   S             QYL    
Sbjct: 325 SLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
Query: 721 --PYDIHCFALCHCCEFDACDCEMT-----CP----KNCSCFHDQNWNTNVVDCSEQQIS 769
             P  +   A   C + +  D   T      P    +N       N +  ++D S Q + 
Sbjct: 385 NEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLL 444
Query: 770 TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLS-------LYVNNSQIEVILNQTFN 822
                   D  H+ L GN+F+       I + N+L        L +++  +  I  Q F+
Sbjct: 445 AGL----QDLRHLNLQGNSFQDGS----ISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ--ENRIEYIANGTFNALISLQVLQL 880
           GL ++  L L +N +T   G   D L  L  LYL    N I  I      AL        
Sbjct: 497 GLRNVNHLDLSHNSLT---GDSMDALSHLKGLYLNMASNNIRIIPPHLLPAL-------- 545
Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVI 940
                           S    + L +NP  C+C+ +  + TW  +N +K++D  + +C  
Sbjct: 546 ----------------SQQSIINLSHNPLDCTCSNIHFI-TWYKENLHKLEDSEETTC-- 586
Query: 941 DESSPPIRKEIDL 953
             ++PP  + + L
Sbjct: 587 --ANPPSLRGVKL 597

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 131/556 (23%), Positives = 216/556 (38%), Gaps = 95/556 (17%)
Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
           +D S+  +  +P  L   P  K L L +N IS++       L +L  LRL  N I +L  
Sbjct: 36  VDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDF 93
Query: 475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIR-LDSNF----LTDINGVFTYLAQ 529
            +      LE L++S N++  I          +A++R LD +F    +  +   F  L +
Sbjct: 94  HVFLFNQDLEYLDVSHNRLQNISCCP------MASLRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILE 589
           L +L LS       D   V  +L    I  + +S     Y IK G              E
Sbjct: 148 LTFLGLSAAKFRQLDLLPV-AHLHLSCILLDLVS-----YHIKGG--------------E 187
Query: 590 ISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL------ 643
              L IPN+  +  +         P++ F      +V++  N +  L L+ ++L      
Sbjct: 188 TESLQIPNTTVLHLV-------FHPNSLFS----VQVNMSVNALGHLQLSNIKLNDENCQ 236
Query: 644 ------KPVPQNKTLPEFYLGGNPFDCDCSM-----------DWLPIINNNTSPSMERQY 686
                   + +  TL    L        CS+           ++L I N   +  ++R+ 
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296
Query: 687 PKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPK 746
               +       + + +    L + EA  S +    +I   ++      D     M CP 
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSIS-----DTPFIHMVCPP 350
Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL 806
           + S F   N+  NV   S  Q  +   R+           N FK     V +  KNM SL
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-----VALMTKNMSSL 405
Query: 807 YVNNSQIEVILN--------QTFNGLSSLQVLHLENNLITHFYGYEFDNLE-KLSELYLQ 857
                 ++V LN        +T     S+ VL+L +N++T   G  F  L  K+  L L 
Sbjct: 406 ----ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT---GSVFRCLPPKVKVLDLH 458
Query: 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ 917
            NRI  I       L +LQ L +  N+LKS      +  + L+ ++L +NP+ C+C  ++
Sbjct: 459 NNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
Query: 918 ELQTWIIDNSNKVKDG 933
            L  WI  +S  V++ 
Sbjct: 518 YLSEWINKHSGVVRNS 533

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           ++ LDL NN I YI ++      NL  + L+ N I+ I    F+ L  L  L LS N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI--PSALSELPFLKTLDLGE-NQISKIENGSFKNL 456
           N+ S  FK  S+L  L+L  N    +   S  S L  L+ L +G  +  +KI+   F  L
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 457 QQLTDLRL 464
             L +L +
Sbjct: 174 TFLEELEI 181

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 117/273 (42%), Gaps = 25/273 (9%)
Query: 411 ALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
           A+K LDLS+N I  I  S L     L+ L L  N I+ IE  SF +L  L  L L  N +
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQI-EIGTFEKNKRLAAIRLDS--NFLTDINGVFTY 526
            NLSS     L SL  LNL  N    + E   F    +L  +R+ +   F       F  
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 527 LAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIH-GNYISSLNNYYEIKDGLSIKNLDAS 583
           L  L  L +  + L  ++   +    N+  L +H   +I  L  + ++   +    L  +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 584 HNRILEISELSIPNSVEVLFINNNLIK--SVKPHTFFDKSNLARVDIYANDIT---KLDL 638
                  SELS   +       N+LIK  + +     D+S L +V    N I+   +L+ 
Sbjct: 233 DLDTFHFSELSTGET-------NSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEF 284
Query: 639 TALRLKPVPQN-----KTLPEFYLGGNPFDCDC 666
           +  +LK VP        +L + +L  NP+DC C
Sbjct: 285 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317

>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain Of Human Tlr2 Length = 146

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
            +D  +V   +V ELE+ NP ++LCLH RD      ++        +I++ E S + + VL
Sbjct: 12   RDAYWVENLMVQELENFNPPFKLCLHKRD------FIPGKWIIDNIIDSIEKSHKTVFVL 65
Query: 1096 TKNFLQTEWSRSD 1108
            ++NF+++EWS+ +
Sbjct: 66   SENFVKSEWSKYE 78

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           ++ LDL NN I YI ++      NL  + L+ N I+ I    F+ L  L  L LS N L 
Sbjct: 28  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI--PSALSELPFLKTLDLGE-NQISKIENGSFKNL 456
           N+ S  FK  S+L  L+L  N    +   S  S L  L+ L +G  +  +KI+   F  L
Sbjct: 88  NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 457 QQLTDLRL 464
             L +L +
Sbjct: 148 TFLEELEI 155

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
           +L ELY+  N++  + + +   L  L VL++  N+LKS      +  + L+K++L  NP+
Sbjct: 452 QLKELYISRNKLMTLPDASL--LPMLLVLKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Query: 910 SCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEI 951
            CSC  +  L  W+  NS K +     S     S  P+R  I
Sbjct: 510 DCSCPRIDYLSRWLNKNSQKEQGSAKCS----GSGKPVRSII 547

>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human Tlr2 Length = 149

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
            +D  +V   +V ELE+ NP ++L LH RD  H    +        +I++ E S + + VL
Sbjct: 15   RDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDN------IIDSIEKSHKTVFVL 68
Query: 1096 TKNFLQTEWSR 1106
            ++NF+++EW +
Sbjct: 69   SENFVKSEWXK 79

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 150/326 (46%), Gaps = 54/326 (16%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           D  T ++L  + +L +    +  I+   +L+  NL  + L+ N+I  I+    + L  L+
Sbjct: 36  DVVTQEELESITKLVVAGEKVASIQGIEYLT--NLEYLNLNGNQITDISP--LSNLVKLT 91
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ----I 445
            L +  N + +I   A +N + L+EL L+ + I +I S L+ L    +L+LG N     +
Sbjct: 92  NLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SPLANLTKXYSLNLGANHNLSDL 148
Query: 446 SKIENGSFKNLQQLTDLRLVD-NNIGNLSSGMLYEL-------------PSLEVLNLSKN 491
           S + N +  N   +T+ ++ D   I NL+   LY L              SL  L+    
Sbjct: 149 SPLSNXTGLNYLTVTESKVKDVTPIANLTD--LYSLSLNYNQIEDISPLASLTSLHYFTA 206
Query: 492 KIHQI-EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
            ++QI +I       RL ++++ +N +TD++ +          NLS+             
Sbjct: 207 YVNQITDITPVANXTRLNSLKIGNNKITDLSPLA---------NLSQ------------- 244
Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
            L WL+I  N IS +N    +KD   +K L+   N+I +IS L+  + +  LF+NNN + 
Sbjct: 245 -LTWLEIGTNQISDIN---AVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLG 300
Query: 611 SVKPHTFFDKSNLARVDIYANDITKL 636
           +         +NL  + +  N IT +
Sbjct: 301 NEDXEVIGGLTNLTTLFLSQNHITDI 326

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 763 CSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
           C +Q++S VP  IP    ++ L  N  K + ++ F     +  L ++  +IE I ++ ++
Sbjct: 13  CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 72
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
           GL  L  L L  N I  F    F  L  L  L   E ++  + +     LI+L+ L +  
Sbjct: 73  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 132
Query: 883 NRLKS 887
           N + S
Sbjct: 133 NFIHS 137

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 763 CSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
           C +Q++S VP  IP    ++ L  N  K + ++ F     +  L ++  +IE I ++ ++
Sbjct: 18  CMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH 77
Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
           GL  L  L L  N I  F    F  L  L  L   E ++  + +     LI+L+ L +  
Sbjct: 78  GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 883 NRLKS 887
           N + S
Sbjct: 138 NFIHS 142

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
           DA T  DL  +  L   N  +  IE   +L+  NL  + L +N+I  +T           
Sbjct: 39  DAVTQADLDGIATLSAFNTGVTTIEGIQYLN--NLIGLELKDNQITDLTP---------- 86
Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
                            KN + + EL+LS N +  + SA++ L  +KTLDL   QI+ + 
Sbjct: 87  ----------------LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT 129
Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
                 L  L  L L  N I N+S   L  L +L+ L++  N+++  ++       +L  
Sbjct: 130 --PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVN--DLTPLANLSKLTT 183
Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
           +R D N ++DI+     L  L+ ++L +N +
Sbjct: 184 LRADDNKISDISP-LASLPNLIEVHLKDNQI 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1344
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-117
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-70
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-112
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-111
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-90
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-90
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-45
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-85
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-71
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-67
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-53
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-80
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-75
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-76
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-47
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-70
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-54
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-22
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-50
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-69
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-61
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-67
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-60
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-52
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-43
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-55
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-51
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-44
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-60
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-53
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-60
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-44
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-40
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-44
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-40
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-55
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-33
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-30
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-50
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-47
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-54
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-53
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-34
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-53
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-46
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-36
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-53
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-49
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-50
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-42
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-40
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-35
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-47
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-42
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-41
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-32
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-40
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-28
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-40
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-26
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-23
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-40
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-39
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-29
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-40
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-36
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-29
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-24
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-22
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-33
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-33
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-27
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-25
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-22
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-31
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-19
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-16
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-33
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-33
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-28
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-34
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-32
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-30
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-34
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-21
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-34
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-29
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-17
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-32
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-18
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-17
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-30
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-27
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-13
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-29
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-21
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
2js7_A	160	Myeloid differentiation primary response protein M	6e-28
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	4e-27
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-25
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-24
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-25
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-21
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-18
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	6e-25
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-24
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-23
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-16
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-22
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-14
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-13
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-15
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-14
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-11
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	2e-10
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	8e-09
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	5e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	4e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	3e-04

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  385 bits (991), Expect = e-117
 Identities = 169/984 (17%), Positives = 328/984 (33%), Gaps = 192/984 (19%)

Query: 292  VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            +      +L+           L     L LS N +  + A +F  L  LQ L+L +    
Sbjct: 8    IAFYRFCNLTQ------VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 352  Y-IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL--VNIDSKAFKN 408
              I+  AF +L NL  + L  ++I+ +    F GL+ L +L L    L    +    F+N
Sbjct: 62   LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 409  CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ--LTDLRL 464
              AL  LDLS N I  + +  +  +L  LK++D   NQI  +     + LQ   L+   L
Sbjct: 122  LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 465  VDNNIGNLSSGMLYELP------SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
              N++ +  S    +         LE+L++S N       G F            SN ++
Sbjct: 182  AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF------------SNAIS 229

Query: 519  DIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
                        ++      +++               D   N  + L          S+
Sbjct: 230  KSQAFSLILAHHIMGAGFGFHNIK--------------DPDQNTFAGLAR-------SSV 268

Query: 578  KNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
            ++LD SH  +  ++         ++VL +  N I  +    F+   NL  +++  N + +
Sbjct: 269  RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 636  LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNV 695
            L  +            +    L  N          + II + T   +     K+  LD  
Sbjct: 329  LYSSNFY-----GLPKVAYIDLQKNH---------IAIIQDQTFKFL----EKLQTLDLR 370

Query: 696  VCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQN 755
               +T       +P        +L                                   N
Sbjct: 371  DNALTTIHFIPSIP------DIFLSG------------------------NKLVTLPKIN 400

Query: 756  WNTNVVDCSEQQISTVPPRIPMDA----THVYLDGNTFKTIP-NHVFIGRKNMLSLYVNN 810
               N++  SE ++  +     +        + L+ N F +   +       ++  L++  
Sbjct: 401  LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 811  SQIEV-----ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
            + +++     +    F GLS LQVL+L +N +       F +L  L  L L  NR+  ++
Sbjct: 461  NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520

Query: 866  NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIID 925
            +       +L++L +  N+L +    + +    L  + + +N F C C  L     W+  
Sbjct: 521  HNDL--PANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE-LSTFINWLNH 574

Query: 926  NSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVSDYLPFMIITFL 985
             +  +         +   S        L++  C E     S+  S+         I+  +
Sbjct: 575  TNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL--------FIVCTV 626

Query: 986  MFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNFKATSSKHFGEDREKL--------PKD 1037
               +FL+ I+ +  F+     ++  K   RL            E              KD
Sbjct: 627  TLTLFLMTILTVTKFRG--FCFICYKTAQRLVFKDHPQGT---EPDMYKYDAYLCFSSKD 681

Query: 1038 EEFVLQSIVAELE---HGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
              +V  +++  L+        + LC   RD       +                      
Sbjct: 682  FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIAN-------------------- 721

Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
                           + +A   SR+++ +++++FL+  W    F  A    L+     L+
Sbjct: 722  ---------------IQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALI 766

Query: 1155 LV-EENIVPEAES-DIELKPYLKSCMKIRWGEKR-----FWERLRYAMPTCDNSKKSCNY 1207
            +V   ++          ++ +++    +RW E       F  +L   +   +        
Sbjct: 767  MVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFLHKLSQQILKKEKE------ 820

Query: 1208 RRNINNYTIDSGTGRRSIEAHHTH 1231
            ++  NN  + +     S   HH H
Sbjct: 821  KKKDNNIPLQTVAT-ISGSHHHHH 843

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  334 bits (858), Expect = 2e-98
 Identities = 134/699 (19%), Positives = 250/699 (35%), Gaps = 125/699 (17%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            Q + + E L +S   +  +    F  L  L+ L + ++         L +   +   L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLP 73

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
            L++L++ SS I  +  D F  L ++  L L    + D        R   A         
Sbjct: 74  NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA--------- 124

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS--SLRI 244
                 L  LDLS N++R+L  +    K   L+++   +N+I  +  +    L   +L  
Sbjct: 125 ------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 245 LNISSNHLVSLPEGLFSSC------RDISEIYAQKNSLVELSRGLFHK------------ 286
            ++++N L S     +  C        +  +    N       G F              
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIR--LIILNLSNNELTRIDAKTFKDLVFLQRLD 344
              ++      +++     D+ TF GL R  +  L+LS+  +  ++++ F+ L  L+ L+
Sbjct: 239 AHHIMGAGFGFHNIK--DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLN 296

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
           L  N I  I D AF  L NL  + LS N +  + +  F GL  ++ + L  N +  I  +
Sbjct: 297 LAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
            FK    L+ LDL  NA+  I      +P +  + L  N++  +   +         + L
Sbjct: 357 TFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINL----TANLIHL 408

Query: 465 VDNNIGNLSSG-MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGV 523
            +N + NL     L  +P L++L L++N+                            +  
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCS----------------------GDQT 446

Query: 524 FTYLAQLLWLNLSENHLVWFDYAMVPG-------NLKWLDIHGNYISSLNNYYEIKDGLS 576
            +    L  L L EN L       +         +L+ L ++ NY++SL          +
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV-FSHLTA 505

Query: 577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
           ++ L  + NR+  +S   +P ++E+L I+ N + +  P  F                   
Sbjct: 506 LRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVF------------------- 546

Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV 696
                         +L    +  N F C+C +       N+T+ ++           ++ 
Sbjct: 547 -------------VSLSVLDITHNKFICECELSTFINWLNHTNVTIAG------PPADIY 587

Query: 697 CKM-TYSRGS--THLPASEAAPSQYLCPYDIHCFALCHC 732
           C       G     L        + L       F +C  
Sbjct: 588 CVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTV 626

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  252 bits (646), Expect = 3e-70
 Identities = 100/499 (20%), Positives = 187/499 (37%), Gaps = 43/499 (8%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
           D RI       L  +            + L L  N I  +  ++F  L  L++L + S +
Sbjct: 5   DGRIAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 252 L-VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
             +++ +  F +  ++  +    + +  L    F  L  L  L L    LS   + +  F
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

Query: 311 IGLIRLIILNLSNNELTRIDA-KTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY--NLHTI 367
             L  L  L+LS N++  +    +F  L  L+ +D  +N I  + ++    L    L   
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179

Query: 368 YLSENRIHHITAHLFNGLY------VLSKLTLSNNLLVNIDSKAFKNC------------ 409
            L+ N ++   +  +          VL  L +S N      +  F N             
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

Query: 410 SALKELDLSSNAIVEIP-SALSELP--FLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
             +       + I +   +  + L    ++ LDL    +  + +  F+ L+ L  L L  
Sbjct: 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFT 525
           N I  ++    Y L +L+VLNLS N + ++    F    ++A I L  N +  I +  F 
Sbjct: 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
           +L +L  L+L +N L    +     ++  + + GN + +L         L+   +  S N
Sbjct: 360 FLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPK-----INLTANLIHLSEN 411

Query: 586 RILEISELSIP---NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTAL 641
           R+  +  L        +++L +N N   S        +  +L ++ +  N +     T L
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 642 RLKPVPQNKTLPEFYLGGN 660
                     L   YL  N
Sbjct: 472 CWDVFEGLSHLQVLYLNHN 490

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  210 bits (535), Expect = 4e-56
 Identities = 94/473 (19%), Positives = 179/473 (37%), Gaps = 59/473 (12%)

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
              RI      +L  +P+ L         +    N +  ++   F  LEQL +L+L S +
Sbjct: 4   FDGRIAFYRFCNLTQVPQVL----NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI--GYIEDNA 357
                ID+  F  L  L IL+L ++++  +    F+ L  L  L L    +    ++D  
Sbjct: 60  T-PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 358 FLSLYNLHTIYLSENRIHHITAH-LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA--LKE 414
           F +L  L  + LS+N+I  +  H  F  L  L  +  S+N +  +     +      L  
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178

Query: 415 LDLSSNAIVEIPSALSELPF-------LKTLDLGENQISKIENGSFKN------------ 455
             L++N++    S              L+ LD+  N  +    G+F N            
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELP--SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
              +       +NI +        L   S+  L+LS   +  +    FE  K L  + L 
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSL----- 565
            N +  I +  F  L  L  LNLS N L     +   G   + ++D+  N+I+ +     
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358

Query: 566 -------------NNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
                        N    I    SI ++  S N+++ + ++++  +  ++ ++ N ++++
Sbjct: 359 KFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINL--TANLIHLSENRLENL 416

Query: 613 KPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDC 664
               F  +  +L  + +  N  +             +N +L + +LG N    
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQT----PSENPSLEQLFLGENMLQL 465

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  158 bits (400), Expect = 2e-39
 Identities = 97/506 (19%), Positives = 156/506 (30%), Gaps = 124/506 (24%)

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG-N 471
           +        + ++P  L      + L L  N I  +   SF  L+QL  L L        
Sbjct: 7   RIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
           +       LP+L +L+L  +KI+ +    F+                        L  L 
Sbjct: 64  IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-----------------------LFHLF 100

Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS 591
            L L                L    +   Y  +L                          
Sbjct: 101 ELRLYFC------------GLSDAVLKDGYFRNLKA------------------------ 124

Query: 592 ELSIPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQNK 650
                  +  L ++ N I+S+  H  F K ++L  +D  +N I  +    L      Q K
Sbjct: 125 -------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE---PLQGK 174

Query: 651 TLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPA 710
           TL  F L  N      S+DW   +N   +  +E     I+D+           G+     
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-----ILDV----------SGNGWTVD 219

Query: 711 SEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQIST 770
                S  +         L H                         +          I  
Sbjct: 220 ITGNFSNAISKSQAFSLILAH-------------------------HIMGAGFGFHNIKD 254

Query: 771 VPPRI-----PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
                          H+ L      ++ + VF   K++  L +  ++I  I ++ F GL 
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
           +LQVL+L  NL+   Y   F  L K++ + LQ+N I  I + TF  L  LQ L L  N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 886 KSFRAFDLNTNSMLRKVYLGNNPFSC 911
            +           +  ++L  N    
Sbjct: 375 TTIHFI-----PSIPDIFLSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 97.6 bits (243), Expect = 1e-20
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 10/177 (5%)

Query: 749 SCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
           SC  D      +       ++ VP  +      + L  N  +T+    F   + +  L +
Sbjct: 1   SCSFDGR----IAFYRFCNLTQVPQVLN-TTERLLLSFNYIRTVTASSFPFLEQLQLLEL 55

Query: 809 NNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE--YIA 865
            +    + I  + F  L +L++L L ++ I   +   F  L  L EL L    +    + 
Sbjct: 56  GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK 115

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCA-TLQELQ 920
           +G F  L +L  L L  N+++S          + L+ +   +N     C   L+ LQ
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  367 bits (945), Expect = e-112
 Identities = 142/691 (20%), Positives = 261/691 (37%), Gaps = 97/691 (14%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           S +  +  Q +  L+ L + + +L +L    F+   NL  L + + ++Q        +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-------KIKN 114

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                 + L  L++S + + S        L N+Q L LS N I+ + +    +   S+  
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS-- 172

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF--- 236
                        L+ L+LS N+++            RL  L L N ++           
Sbjct: 173 -------------LKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLE 218

Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
           +A +S+R L++S++ L +     F   +  +                      L +LDLS
Sbjct: 219 LANTSIRNLSLSNSQLSTTSNTTFLGLKWTN----------------------LTMLDLS 256

Query: 297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
            N+L+   +   +F  L +L    L  N +  + + +   L  ++ L+L+          
Sbjct: 257 YNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR--------- 305

Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
                 +     +S   +  I    F  L  L  L + +N +  I S  F     LK L 
Sbjct: 306 ------SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 417 LSSNAI---VEIPSALSELPF--LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-G 470
           LS++              L    L  L+L +N+ISKIE+ +F  L  L  L L  N I  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN---GVFTYL 527
            L+      L ++  + LS NK  Q+   +F     L  + L    L +++     F  L
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSL-------NNYYEIKDGLSIK 578
             L  L+LS N++   +  M+ G   L+ LD+  N ++ L          Y +K    + 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 579 NLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
            L+   N   EI      +   ++++ +  N + ++    F ++ +L  +++  N IT +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPFDCDC-SMDWLPIINNNTSPSMERQYPKIMDLDNV 695
           +         P  + L E  +  NPFDC C S+ W     N T        P++    + 
Sbjct: 600 EKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINETH----TNIPELS--SHY 649

Query: 696 VCKM-TYSRGSTHLPASEAAPSQYLCPYDIH 725
           +C    +  G        ++       +  H
Sbjct: 650 LCNTPPHYHGFPVRLFDTSSCKDSAHHHHHH 680

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 1e-30
 Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 38/244 (15%)

Query: 58  LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
           +   +T + ++ + ++ E+ +S  K ++L  + F+ + +L+RL +    L+      +D 
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-----VDS 471

Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASA 177
            P     LR L +L++S++NI +I+DD+   L  ++ L+L  N++  +            
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 178 ESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
                          L IL+L  N    +           L+ + L  N ++ +  + F 
Sbjct: 532 LKGLSH---------LHILNLESNGFDEIPVEV-FKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 238 ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS 297
              SL+ LN+  N + S+ + +F                             L  LD+  
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFG-----------------------PAFRNLTELDMRF 618

Query: 298 NHLS 301
           N   
Sbjct: 619 NPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 2e-24
 Identities = 42/156 (26%), Positives = 69/156 (44%)

Query: 755 NWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814
             +  V DCS  +++ VP  +P + T + L  N  + +P   F     + SL V  + I 
Sbjct: 3   TVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALIS 874
            +  +    L  L+VL+L++N ++      F     L+EL+L  N I+ I N  F    +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 875 LQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           L  L L  N L S +         L+++ L NN   
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 5e-18
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
             + L  N    + +  F    N+  L++ ++ I+ I N  F    +L  L L +N ++ 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNAL--ISLQVLQLDGNRLKSFRAFDLNTNS 897
                   LE L EL L  N+I+ + +   +     SL+ L+L  N++K F     +   
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 898 MLRKVYLGNNPFSCS 912
            L  ++L N     S
Sbjct: 196 RLFGLFLNNVQLGPS 210

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.4 bits (199), Expect = 2e-15
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 14/154 (9%)

Query: 780 THVYLDGN--TFKTIPNHVFIGRKNML--SLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
            ++ L  +  + +T+ N  F+   +     L +  ++I  I +  F+ L  L+VL L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 836 LITH-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFD 892
            I     G E+  LE + E+YL  N+   +   +F  + SLQ L L    LK+       
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 893 LNTNSMLRKVYLGNNPFS-------CSCATLQEL 919
                 L  + L NN  +            L+ L
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.7 bits (197), Expect = 4e-15
 Identities = 31/182 (17%), Positives = 63/182 (34%), Gaps = 31/182 (17%)

Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
            L  +     P +   G  ++  L + ++  + I  + F  L  L+++ L  N +     
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 843 YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV 902
             F+N   L  L LQ+N I  +    F                             L ++
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVF-----------------------GPAFRNLTEL 614

Query: 903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGL-DISCVIDESSPPIRKE---IDLNSTTC 958
            +  NPF C+C ++     WI +    + +      C    ++PP          ++++C
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLC----NTPPHYHGFPVRLFDTSSC 670

Query: 959 TE 960
            +
Sbjct: 671 KD 672

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.2 bits (188), Expect = 4e-14
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 21/161 (13%)

Query: 780 THVYLDGNTF-KTIPNHVF--IGRKNMLSLYVNNSQIEVILNQTFNGL--SSLQVLHLEN 834
             ++L+      ++   +   +   ++ +L ++NSQ+    N TF GL  ++L +L L  
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN---------RL 885
           N +       F  L +L   +L+ N I+++ + + + L +++ L L  +          L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 886 KSFRAFDLNTNSMLRKVYLGNNPFS-------CSCATLQEL 919
                F       L  + + +N               L+ L
Sbjct: 318 PKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 5e-14
 Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 16/160 (10%)

Query: 767 QISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIG---------RKNMLSLYVNNSQIE 814
            ++ V          +   +L+ N  + + +H   G         +++     ++ + + 
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE--YIANGTFNAL 872
            I + +F  L  L+ L++E+N I       F  L  L  L L  +      + N TF +L
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 873 I--SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
               L +L L  N++    +   +    L  + LG N   
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 2e-12
 Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 7/138 (5%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN--GLSSLQVLHLENNLI 837
             + L  N   +      +  +N+  L ++N++I+ + ++  +    SSL+ L L +N I
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 838 THFYGYEFDNLEKLSELYLQENRIEYIANGTF---NALISLQVLQLDGNRLKSF--RAFD 892
             F    F  + +L  L+L   ++            A  S++ L L  ++L +     F 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

Query: 893 LNTNSMLRKVYLGNNPFS 910
               + L  + L  N  +
Sbjct: 244 GLKWTNLTMLDLSYNNLN 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  362 bits (932), Expect = e-111
 Identities = 116/638 (18%), Positives = 220/638 (34%), Gaps = 75/638 (11%)

Query: 74  EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
           +     N  L E+P  + +    L   + N   L         +   +   L  L  L++
Sbjct: 15  KTYNCENLGLNEIPGTLPNSTECL-EFSFN--VLP-------TIQNTTFSRLINLTFLDL 64

Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193
           +   I  I +D F S   + TL L+ N +  +                      SG   L
Sbjct: 65  TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-----------------SGPKAL 107

Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
           + L      + ++     +   + L++L+L +N IS I          L++L+  +N + 
Sbjct: 108 KHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 254 SLPEGLFSSCRDISEIY--AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
            L +   SS +  + +      N +  +  G F        L+                 
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNS 225

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
            +  L +    + +   I    F+ L    ++ ++L+ +    I  N F     L  + L
Sbjct: 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPS 427
           +   +  + + L   L  L KL LS N   N+   +  N  +L  L +  N         
Sbjct: 286 TATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 428 ALSELPFLKTLDLGENQISKIE--NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
            L  L  L+ LDL  + I   +  N   +NL  L  L L  N   +L +    E P LE+
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 486 LNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWF 543
           L+L+  ++   +    F+    L  + L  + L   +  +F  L  L  LNL  NH    
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 544 DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEV 601
           +      +L+ L                     ++ L  S   +  I + +  +   +  
Sbjct: 465 NIQK-TNSLQTLG-------------------RLEILVLSFCDLSSIDQHAFTSLKMMNH 504

Query: 602 LFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
           + +++N + S           +  +++ +N I+ +  + L +             L  NP
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS-----QQRTINLRQNP 558

Query: 662 FDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKM 699
            DC CS  +                 K+ D ++ +C+ 
Sbjct: 559 LDCTCSNIYFLEWYKE-------NMQKLEDTEDTLCEN 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  224 bits (572), Expect = 2e-62
 Identities = 87/442 (19%), Positives = 162/442 (36%), Gaps = 37/442 (8%)

Query: 35  SNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGL 94
           + +     D     +++   T  L           I SL      +    ++   VF GL
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251

Query: 95  RNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQT 154
             +   +IN +   +      ++   +      LQ L+++++++  +       L+ ++ 
Sbjct: 252 CEMSVESINLQKHYFF-----NISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKK 305

Query: 155 LNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGIT 213
           L LS N   ++  +                         L  L +  N  R       + 
Sbjct: 306 LVLSANKFENLCQISA------------------SNFPSLTHLSIKGNTKRLELGTGCLE 347

Query: 214 KFRRLQNLHLENNEISQI--APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271
               L+ L L +++I            LS L+ LN+S N  +SL    F  C  +  +  
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407

Query: 272 QKNSLVEL-SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330
               L    ++  F  L  L VL+LS + L      E  F GL  L  LNL  N   + +
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD--ISSEQLFDGLPALQHLNLQGNHFPKGN 465

Query: 331 AK---TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
            +   + + L  L+ L L    +  I+ +AF SL  ++ + LS NR+   +    + L  
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
           +  L L++N +  I        S  + ++L  N +    S +    FL+       ++  
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI---YFLEWYKENMQKLED 581

Query: 448 IENGSFKNLQQLTDLRLVDNNI 469
            E+   +N   L  +RL D  +
Sbjct: 582 TEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 2e-29
 Identities = 35/190 (18%), Positives = 62/190 (32%), Gaps = 6/190 (3%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
           T   +  C   +       +C    ++ +P  +P     +    N   TI N  F    N
Sbjct: 1   TTSSDQKCIEKEV--NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLIN 58

Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           +  L +   QI  I   TF     L  L L  N +           + L  L+  +  I 
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118

Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC----ATLQE 918
            I     +   +L+ L L  N + S +         L+ +   NN          ++LQ+
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 919 LQTWIIDNSN 928
                ++ + 
Sbjct: 179 ATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  110 bits (276), Expect = 9e-25
 Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 11/185 (5%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ---TFNGLSSLQVLHLENNL 836
             + L  +        +F G   +  L +  +       Q   +   L  L++L L    
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN 896
           ++    + F +L+ ++ + L  NR+   +    + L  +  L L  N +       L   
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546

Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL--N 954
           S  R + L  NP  C+C +      W  +N  K++D  D  C     +PP+ + + L   
Sbjct: 547 SQQRTINLRQNPLDCTC-SNIYFLEWYKENMQKLEDTEDTLC----ENPPLLRGVRLSDV 601

Query: 955 STTCT 959
           + +C+
Sbjct: 602 TLSCS 606

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.0 bits (203), Expect = 6e-16
 Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
             + L  + F  I ++ F     +  L +  + +  + +    GLS+L+ L L  N   +
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN 315

Query: 840 FYGYEFDNLEKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKS--FRAFDLNTN 896
                  N   L+ L ++ N     +  G    L +L+ L L  + +++       L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 897 SMLRKVYLGNNPFS 910
           S L+ + L  N   
Sbjct: 376 SHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 1e-15
 Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 4/135 (2%)

Query: 780 THVYLDGNTFKT-IPNHVFIGRKNMLSLYVNNSQIEVI--LNQTFNGLSSLQVLHLENNL 836
           TH+ + GNT +  +        +N+  L +++  IE     N     LS LQ L+L  N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYI-ANGTFNALISLQVLQLDGNRLKSFRAFDLNT 895
                   F    +L  L L   R++   A   F  L  L+VL L  + L        + 
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

Query: 896 NSMLRKVYLGNNPFS 910
              L+ + L  N F 
Sbjct: 448 LPALQHLNLQGNHFP 462

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 3e-14
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 6/137 (4%)

Query: 780 THVYLDGNTFKTIP--NHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             + L  +  +T    N       ++ SL ++ ++   +  + F     L++L L    +
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 838 THF-YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT- 895
                   F NL  L  L L  + ++  +   F+ L +LQ L L GN          N+ 
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 896 --NSMLRKVYLGNNPFS 910
                L  + L     S
Sbjct: 473 QTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.5 bits (155), Expect = 4e-10
 Identities = 25/159 (15%), Positives = 53/159 (33%), Gaps = 8/159 (5%)

Query: 760 VVDCSEQQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIG--RKNMLSLYVNNSQIE 814
            +      IS++             +    N    +         +   LSL +N + I 
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 815 VILNQTFNGLSSLQV-LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL- 872
            I    F+      +      NL+  F G +   ++ L     ++   E I+   F  L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 873 -ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            +S++ + L  +   +  +   +  S L+++ L     S
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  305 bits (782), Expect = 2e-90
 Identities = 117/584 (20%), Positives = 218/584 (37%), Gaps = 64/584 (10%)

Query: 34  GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
              LS VP D+ +           +D        + + SF N   L+ L +S C++  + 
Sbjct: 20  DQKLSKVPDDIPSSTKN-------IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72

Query: 88  VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
              + GL +L  L +    +Q          PGS  GL  L+ L    + + S+      
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQ-------SFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL- 206
            L  ++ LN++ N I       +                 S   +L  +DLS+N ++T+ 
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAY----------------FSNLTNLVHVDLSYNYIQTIT 169

Query: 207 -GDYSGITKFRR-LQNLHLENNEISQIAPNAFVALSSLRILNISSNHL-VSLPEGLFSSC 263
             D   + +  +   +L +  N I  I   AF  +  L  L +  N    ++ +    + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNL 228

Query: 264 RD------ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
                   I   +  + +L      +   L  + + +    + +    D   F  L  + 
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
            ++L+   +  ++          Q L +    +        L L  L ++ L+ N+    
Sbjct: 289 AMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSIS 343

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN--CSALKELDLSSNAIVEIPSALSELPFL 435
                  L  LS L LS N L      ++ +   ++L+ LDLS N  + + +    L  L
Sbjct: 344 --FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 436 KTLDLGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
           + LD   + + ++ E  +F +L++L  L +   N      G+   L SL  L ++ N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 495 Q-IEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPG-- 550
                  F     L  + L    L  I+ GVF  L +L  LN+S N+L++ D +      
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521

Query: 551 NLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISEL 593
           +L  LD   N I +      ++    S+   + ++N +  I E 
Sbjct: 522 SLSTLDCSFNRIETSKG--ILQHFPKSLAFFNLTNNSVACICEH 563

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  300 bits (771), Expect = 5e-89
 Identities = 118/623 (18%), Positives = 231/623 (37%), Gaps = 71/623 (11%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
            +KL  VP  +      + +++S + +K +    F + + +Q L+LSR  I  I+   + 
Sbjct: 20  DQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW- 76

Query: 172 VRRASAESNSGEKIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230
                             G+  L  L L+ N +++    S  +    L+NL     +++ 
Sbjct: 77  -----------------HGLHHLSNLILTGNPIQSFSPGS-FSGLTSLENLVAVETKLAS 118

Query: 231 IAPNAFVALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS----RGLFH 285
           +       L +L+ LN++ N + S      FS+  ++  +    N +  ++    + L  
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL-TRIDAKTFKDLVFLQRLD 344
             +  L LD+S N +    I +  F G+ +L  L L  N   + I     ++L  L    
Sbjct: 179 NPQVNLSLDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 345 LR------NNSIGYIEDNAFLSLYNLHT--IYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
           L         ++   E +    L ++      L+           F+ L  +S ++L+  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL 456
            +  ++          + L +    + + P+   +LPFLK+L L  N+ S         L
Sbjct: 296 SIKYLEDVPK--HFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISF--KKVAL 349

Query: 457 QQLTDLRLVDNNIGNLSSGMLYEL--PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDS 514
             L+ L L  N +         +L   SL  L+LS N    +    F   + L  +    
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQH 408

Query: 515 NFLTDIN--GVFTYLAQLLWLNLSENHL-VWFDYAMVP-GNLKWLDIHGNYISSLNNYYE 570
           + L  +     F  L +LL+L++S  +  + FD   +   +L  L + GN          
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 571 IKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
             +  ++  LD S  ++ +IS         +++L +++N +  +    +    +L+ +D 
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLP---IINNNTSPSMER- 684
             N I                K+L  F L  N   C C                 ++E+ 
Sbjct: 529 SFNRIETSKGILQ-----HFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQM 583

Query: 685 --QYP------KIMDLDNVVCKM 699
               P       ++D +N  C M
Sbjct: 584 TCATPVEMNTSLVLDFNNSTCYM 606

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  231 bits (590), Expect = 8e-65
 Identities = 114/621 (18%), Positives = 211/621 (33%), Gaps = 57/621 (9%)

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
           T    + ++  +   + +    +    LS N L  + S +F N S L+ LDLS   I  I
Sbjct: 15  TYQCMDQKLSKVPDDIPSSTKNID---LSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 426 -PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
              A   L  L  L L  N I     GSF  L  L +L  V+  + +L S  + +L +L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 485 VLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQL----LWLNLSEN 538
            LN++ N IH  ++   F     L  + L  N++  I      +L +     L L++S N
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191

Query: 539 HLVWF-DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN 597
            + +  D A     L  L + GN+ SS            ++NL  +   +  +       
Sbjct: 192 PIDFIQDQAFQGIKLHELTLRGNFNSSN------IMKTCLQNL--AGLHVHRLILGE--- 240

Query: 598 SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYL 657
                F +   ++  +P       ++   +             ++   +     +    L
Sbjct: 241 -----FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM---SL 292

Query: 658 GGN------PFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPAS 711
            G                 L II            P +  L   + K + S     LP+ 
Sbjct: 293 AGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352

Query: 712 EA-----APSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ 766
                      +                 D            S           +D    
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM---SANFMGLEELQHLDFQHS 409

Query: 767 QISTVPPRIPMDA----THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTF 821
            +  V       +     ++ +     K   + +F+G  ++ +L +  NS  +  L+  F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
              ++L  L L    +       FD L +L  L +  N + ++ +  +N L SL  L   
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID 941
            NR+++ +    +    L    L NN  +C C   Q+   W+ +    + +   ++C   
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACIC-EHQKFLQWVKEQKQFLVNVEQMTC--- 585

Query: 942 ESSPPIRKE---IDLNSTTCT 959
            ++P        +D N++TC 
Sbjct: 586 -ATPVEMNTSLVLDFNNSTCY 605

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  213 bits (544), Expect = 8e-59
 Identities = 83/419 (19%), Positives = 165/419 (39%), Gaps = 20/419 (4%)

Query: 60  SSITTKSFQNIYSLEELKISNCKL-VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
             I  ++FQ I  L EL +        +       L  L    +     + +++ +    
Sbjct: 194 DFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE-IFE 251

Query: 119 PGSLDGLRELQV--LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVRR 174
           P  ++GL ++ +    ++ +N  S     F  LAN+  ++L+  SI+ ++ +      + 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQS 311

Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
            S      ++        L+ L L+ NK               L  L L  N +S     
Sbjct: 312 LSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK---KVALPSLSYLDLSRNALSFSGCC 368

Query: 235 AF--VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLL 291
           ++  +  +SLR L++S N  + +    F    ++  +  Q ++L  ++    F  LE+LL
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSI 350
            LD+S  +       +  F+GL  L  L ++ N       +  F +   L  LDL    +
Sbjct: 428 YLDISYTNTKI--DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
             I    F +L+ L  + +S N +  + +  +N LY LS L  S N +            
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
           +L   +L++N++  I        FL+ +   +  +  +E  +     ++    ++D N 
Sbjct: 546 SLAFFNLTNNSVACICEH---QKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNN 601

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  195 bits (498), Expect = 9e-53
 Identities = 75/390 (19%), Positives = 135/390 (34%), Gaps = 37/390 (9%)

Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           +        LS   + I  +          ++LS N L  + + +F +   LQ LDL   
Sbjct: 14  ITYQCMDQKLSKVPDDIPSS-------TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC 66

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
            I  IED A+  L++L  + L+ N I   +   F+GL  L  L      L +++S     
Sbjct: 67  EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126

Query: 409 CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTD----L 462
              LK+L+++ N I   ++P+  S L  L  +DL  N I  I     + L++       L
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
            +  N I  +      +   L  L L  N     I     +    L   RL      D  
Sbjct: 187 DMSLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 522 -------GVFTYLAQL--LWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYE 570
                   +   L  +      L+  +    D        N+  + + G  I  L +   
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--- 302

Query: 571 IKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYA 630
           +      ++L     ++ +   L +P  ++ L +  N              +L+ +D+  
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPF-LKSLTLTMNKGSI--SFKKVALPSLSYLDLSR 359

Query: 631 NDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
           N ++     +         + L    L  N
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHL---DLSFN 386

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 4e-26
 Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
               C              C +Q++S VP  IP    ++ L  N  K + ++ F     +
Sbjct: 3   SLNPCIEVVPNI----TYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSEL 58

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             L ++  +IE I ++ ++GL  L  L L  N I  F    F  L  L  L   E ++  
Sbjct: 59  QWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 864 IANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKVYLGNNPFSCSCA 914
           + +     LI+L+ L +  N + S +    F   TN  L  V L  N       
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN--LVHVDLSYNYIQTITV 170

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  301 bits (772), Expect = 8e-90
 Identities = 102/523 (19%), Positives = 198/523 (37%), Gaps = 43/523 (8%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
            ++ LDLS NK+  +G    +     LQ L L+++ I+ I  +AF +L SL  L++S NH
Sbjct: 27  AMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
           L SL    F     +  +    N    L    LF  L  L  L + +    S  I    F
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-EIRRIDF 144

Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
            GL  L  L +    L    +++ K +  +  L L  +   ++ +     L ++  + L 
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE----------LDLSSN 420
           +  +            V S +         +  ++F     L             D + N
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264

Query: 421 AIVEIP----SALSELPFLKT-----LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
            + +        +SEL  ++T     L + +  +    +  +  L+++  + + ++ +  
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL 324

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGT---FEKNKRLAAIRLDSNFLTDIN---GVFT 525
           +       L SLE L+LS+N + +  +           L  + L  N L  +     +  
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 526 YLAQLLWLNLSENHLVWFDYAMV-PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
            L  L  L++S N       +   P  +++L++    I  +          +++ LD S+
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QTLEVLDVSN 440

Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
           N +   S       ++ L+I+ N +K++   + F    L  + I  N +  +        
Sbjct: 441 NNLDSFS--LFLPRLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFD-- 494

Query: 645 PVPQNKTLPEFYLGGNPFDCDCSM-DWLPIINNNTSPSMERQY 686
              +  +L + +L  NP+DC C   D+L    N  S   +   
Sbjct: 495 ---RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 534

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  220 bits (563), Expect = 9e-62
 Identities = 85/462 (18%), Positives = 169/462 (36%), Gaps = 47/462 (10%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
           SS+++  F  + SL+ L +       L V  +F  L NL+ L I       +      + 
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE------IR 140

Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
                GL  L  L I + ++++       S+ +I  L L  +    +  +   +  +   
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS--- 197

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
                         +R L+L    L     +S +        +       S +   +F  
Sbjct: 198 --------------VRYLELRDTNLARF-QFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
           L  L        +++ L E  F  C          +    +S     +   +  L +   
Sbjct: 243 LLKL------LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI---ED 355
           +L       T +  L ++  + + N+++  +     + L  L+ LDL  N +        
Sbjct: 297 YLFY--DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 356 NAFLSLYNLHTIYLSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
               +  +L T+ LS+N +  +  T  +   L  L+ L +S N    +   + +    ++
Sbjct: 355 ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMR 413

Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
            L+LSS  I  + + +     L+ LD+  N +          L +L +L +  N +  L 
Sbjct: 414 FLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLP 467

Query: 474 SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
              L   P L V+ +S+N++  +  G F++   L  I L +N
Sbjct: 468 DASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  172 bits (438), Expect = 2e-45
 Identities = 94/577 (16%), Positives = 176/577 (30%), Gaps = 99/577 (17%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           +C A    D  S +   IPS L+    +K+LDL  N+I+ I +G  +    L  L L  +
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFT 525
            I  +     Y L SLE L+LS N +  +    F     L  + L  N    +    +F 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 526 YLAQLLWLNLS-ENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDA 582
            L  L  L +               G  +L  L+I    + +  +        S+K++  
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ-------SLKSI-- 171

Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALR 642
                           +  L ++ +    +        S++  +++   ++ +   + L 
Sbjct: 172 --------------RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 643 LKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS 702
           +  V        F         D S + L  +        E ++             + S
Sbjct: 218 VDEVSSPMKKLAFR---GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274

Query: 703 RGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVD 762
              + L   E    + L     + F              +                  + 
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYD-----LSTVYSLLE-------------KVKRIT 316

Query: 763 CSEQQISTVPPRIPMDATHV---YLDGN--TFKTIPNHVFIGR-KNMLSLYVNNSQIEVI 816
               ++  VP         +    L  N    + + N    G   ++ +L ++ + +  +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 817 --LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI- 873
               +    L +L  L +  N             EK+  L L    I  +       L  
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV 435

Query: 874 ----------------SLQVLQLDGNRLKSF---------RAFDLNTNSM---------- 898
                            LQ L +  N+LK+              ++ N +          
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 899 ---LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD 932
              L+K++L  NP+ CSC  +  L  W+  NS K + 
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQG 532

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.3 bits (175), Expect = 1e-12
 Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 1/161 (0%)

Query: 780 THVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
             + +    TF  I    F G  ++  L +    +    +Q+   +  +  L L  +   
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
                  D L  +  L L++  +                ++    R         N    
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK 245

Query: 899 LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
           L +  L  +       TL  L  +    S+ V +   +  V
Sbjct: 246 LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV 286

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  288 bits (740), Expect = 8e-85
 Identities = 120/573 (20%), Positives = 208/573 (36%), Gaps = 81/573 (14%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
             + LDLS N LR LG YS    F  LQ L L   EI  I   A+ +LS L  L ++ N 
Sbjct: 29  STKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           + SL  G FS    + ++ A + +L  L       L+ L  L+++ N + S  + E  F 
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFS 146

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQ----RLDLRNNSIGYIEDNAFLSLYNLHTI 367
            L  L  L+LS+N++  I     + L  +      LDL  N + +I+  AF  +  LH +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 368 YLSENRIH-HITAHLFNGLYVLSKLTLSNNLL---VNIDSKAFKNCSALKELDLSSNAI- 422
            L  N    ++      GL  L    L         N++         L  L +    + 
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 423 ------VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
                  +I    + L  + +  L    I ++++ S+        L LV+   G   +  
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLK 323

Query: 477 L-------------------YELPSLEVLNLSKNKIHQIEIG--TFEKNKRLAAIRLDSN 515
           L                    +LPSLE L+LS+N +        +      L  + L  N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 516 FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK---------------------- 553
            +  ++  F  L QL  L+   ++L       V  +L+                      
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 554 -----WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINN 606
                 L + GN            +  ++  LD S  ++ ++S  +  +  S++VL +++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 607 NLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDC 666
           N   S+    +   ++L  +D   N I       L+        +L    L  N F C C
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSSLAFLNLTQNDFACTC 559

Query: 667 SMDWLPIINNNTSPSMERQYPKIMDLDNVVCKM 699
                     +           +++++ + C  
Sbjct: 560 EHQSFLQWIKDQR-------QLLVEVERMECAT 585

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  230 bits (588), Expect = 2e-64
 Identities = 105/517 (20%), Positives = 173/517 (33%), Gaps = 68/517 (13%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
            S+   +F  + SL++L      L  L       L+ LK L     N+  +  +   L P
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-----NVAHNLIQSFKL-P 142

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQ----TLNLSRNSIRDIDTLGFAVRRA 175
                L  L+ L++SS+ I+SI       L  +     +L+LS N +  I    F     
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----- 197

Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEIS---QIA 232
                          + L  L L +N        + I     L+   L   E      + 
Sbjct: 198 -------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
                AL  L  L I    L  L                  +  ++    LF+ L  +  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLTNVSS 286

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
             L S  +         F        L L N +  +      K L  L     +  +   
Sbjct: 287 FSLVSVTIERVK----DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-- 340

Query: 353 IEDNAFLSLYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
               + + L +L  + LS N +      +    G   L  L LS N ++ + S  F    
Sbjct: 341 ---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLE 396

Query: 411 ALKELDLSSNAIVEI--PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
            L+ LD   + + ++   S    L  L  LD+         NG F  L  L  L++  N+
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456

Query: 469 I-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD-INGVFTY 526
              N    +  EL +L  L+LS+ ++ Q+    F     L  + +  N         +  
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 527 LAQLLWLNLSENHLVWFD---YAMVPGNLKWLDIHGN 560
           L  L  L+ S NH++          P +L +L++  N
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  178 bits (453), Expect = 5e-47
 Identities = 81/393 (20%), Positives = 142/393 (36%), Gaps = 38/393 (9%)

Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           +       +     +++             L+LS N L  + + +F     LQ LDL   
Sbjct: 10  ITYQCMELNFYKIPDNL-------PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
            I  IED A+ SL +L T+ L+ N I  +    F+GL  L KL      L ++++    +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 409 CSALKELDLSSNAI--VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT----DL 462
              LKEL+++ N I   ++P   S L  L+ LDL  N+I  I     + L Q+      L
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH-QIEIGTFEKNKRLAAIRLDSNFLTDIN 521
            L  N +  +  G   E+  L  L L  N     +     +    L   RL      +  
Sbjct: 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 522 GV----FTYLAQLLWLNLSENHLVWFDYAMVP--------GNLKWLDIHGNYISSLNNYY 569
            +     + L  L  L + E  L + DY +           N+    +    I  + +  
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299

Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIY 629
                   ++L+  + +  +   L + +   + F +N         +  D  +L  +D+ 
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLS 355

Query: 630 ANDITKLDLTALRLKPVPQNKTLPEFYLGGNPF 662
            N ++     +         K L    L  N  
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYL---DLSFNGV 385

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  141 bits (357), Expect = 8e-35
 Identities = 86/517 (16%), Positives = 151/517 (29%), Gaps = 87/517 (16%)

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
                      +IP  L      K LDL  N +  + + SF +  +L  L L    I  +
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD-INGVFTYLAQLL 531
             G    L  L  L L+ N I  + +G F     L  +      L    N    +L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS 591
            LN++ N +                               K      NL           
Sbjct: 128 ELNVAHNLIQ----------------------------SFKLPEYFSNL----------- 148

Query: 592 ELSIPNSVEVLFINNNLIKSVKPHTFFDKSNL----ARVDIYANDITKLDLTALRLKPVP 647
                 ++E L +++N I+S+          +      +D+  N +  +   A +     
Sbjct: 149 -----TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK----- 198

Query: 648 QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTH 707
               L +  L  N    +     +  +             ++  L          R   +
Sbjct: 199 -EIRLHKLTLRNNFDSLNVMKTCIQGLAGL----------EVHRLVL-----GEFRNEGN 242

Query: 708 LPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEM-TCPKNCSCFH------------DQ 754
           L   + +  + LC   I  F L +   +     ++  C  N S F               
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 755 NWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE 814
           N+    ++    +    P         +    N      + V +     L L  N    +
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE-YIANGTFNALI 873
              +Q+  G +SL+ L L  N +       F  LE+L  L  Q + ++       F +L 
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 874 SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           +L  L +     +       N  S L  + +  N F 
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 3e-27
 Identities = 66/277 (23%), Positives = 106/277 (38%), Gaps = 55/277 (19%)

Query: 55  TVLLDSSITTKSFQNIYSLEELKISNCKL--VELPVDVFSGLRNLKRLTINTRNLQWDKS 112
           T   +      S  ++ SLE L +S   L           G  +LK L ++  N      
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS-FN------ 383

Query: 113 KKLDLVPGSLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRNSIRDIDTLGFA 171
             +  +  +  GL +L+ L+   SN+K +S+  VF SL N+  L++S    R      F 
Sbjct: 384 -GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF- 441

Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI 231
                           +G   L +L ++ N  +        T+ R L  L L   ++ Q+
Sbjct: 442 ----------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 232 APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL 291
           +P AF +LSSL++LN+S N+  SL    +                          L  L 
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYK------------------------CLNSLQ 521

Query: 292 VLDLSSNHLSSNHIDETTFIGLIR-LIILNLSNNELT 327
           VLD S NH+ +    +         L  LNL+ N+  
Sbjct: 522 VLDYSLNHIMT--SKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  101 bits (254), Expect = 4e-22
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 5/167 (2%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
            ++ +     +   N +F G  ++  L +  NS  E  L   F  L +L  L L    + 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTN 896
                 F++L  L  L +  N    +    +  L SLQVL    N + +   +    +  
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFP 542

Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
           S L  + L  N F+C+C   Q    WI D    + +   + C     
Sbjct: 543 SSLAFLNLTQNDFACTC-EHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 2e-11
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 5/135 (3%)

Query: 780 THVYLDGN--TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             + L  N  +FK   +    G  ++  L ++ + +  + +  F GL  L+ L  +++ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNL 408

Query: 838 TH-FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK-SFRAFDLNT 895
                   F +L  L  L +         NG FN L SL+VL++ GN  + +F       
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 896 NSMLRKVYLGNNPFS 910
              L  + L      
Sbjct: 469 LRNLTFLDLSQCQLE 483

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 13/167 (7%)

Query: 773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLH 831
            ++P+    + L  N    I    F     +  L + N+   + ++     GL+ L+V  
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 832 L---ENNLITHFYGYEFDNLEKLSELYLQENRIEYIAN------GTFNALISLQVLQLDG 882
           L   E     +   ++   LE L  L ++E R+ Y+          FN L ++    L  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
             ++  + F  N     + + L N  F        +    +   SNK
Sbjct: 292 VTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 4e-06
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 15/141 (10%)

Query: 787 NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD 846
           + +      +F    N+ S  + +  IE + + ++      Q L L N     F   +  
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLK 325

Query: 847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL--KSFRAFDLNTNSMLRKVYL 904
           +L++L+    +          +   L SL+ L L  N L  K   +      + L+ + L
Sbjct: 326 SLKRLTFTSNKGGNA-----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 905 GNNPFS------CSCATLQEL 919
             N              L+ L
Sbjct: 381 SFNGVITMSSNFLGLEQLEHL 401

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  282 bits (723), Expect = 6e-84
 Identities = 84/334 (25%), Positives = 142/334 (42%), Gaps = 11/334 (3%)

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
           ECS     R +     +   +    GI      + L L  N I  +  + F +   L  L
Sbjct: 8   ECSA--QDRAVLCHRKRFVAVP--EGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEEL 61

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
            ++ N + ++  G F++  ++  +  + N L  +  G+F  L  L  LD+S N +    +
Sbjct: 62  ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI--L 119

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
            +  F  L  L  L + +N+L  I  + F  L  L++L L   ++  I   A   L+ L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
            + L    I+ I  + F  LY L  L +S    L  +        + L  L ++   +  
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTA 238

Query: 425 IPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL 483
           +P  A+  L +L+ L+L  N IS IE      L +L +++LV   +  +       L  L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298

Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
            VLN+S N++  +E   F     L  + LDSN L
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  269 bits (689), Expect = 3e-79
 Identities = 90/305 (29%), Positives = 146/305 (47%), Gaps = 6/305 (1%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
           + R+LDL  N+++TL        F  L+ L L  N +S + P AF  L +LR L + SN 
Sbjct: 33  ETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L  +P G+F+   +++++   +N +V L   +F  L  L  L++  N L    I    F 
Sbjct: 92  LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFS 149

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
           GL  L  L L    LT I  +    L  L  L LR+ +I  I D +F  LY L  + +S 
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 372 -NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-AL 429
              +  +T +   GL  L+ L++++  L  +   A ++   L+ L+LS N I  I    L
Sbjct: 210 WPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268

Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
            EL  L+ + L   Q++ +E  +F+ L  L  L +  N +  L   + + + +LE L L 
Sbjct: 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328

Query: 490 KNKIH 494
            N + 
Sbjct: 329 SNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  247 bits (632), Expect = 1e-71
 Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 11/326 (3%)

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           +  R +       V++PEG+ +   +   +   KN +  L++  F     L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFVAVPEGIPT---ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           +S+  ++   F  L  L  L L +N L  I    F  L  L +LD+  N I  + D  F 
Sbjct: 68  VSA--VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
            LYNL ++ + +N + +I+   F+GL  L +LTL    L +I ++A  +   L  L L  
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 420 NAIVEIPS-ALSELPFLKTLDLGE-NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
             I  I   +   L  LK L++     +  +       L  LT L +   N+  +    +
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAV 244

Query: 478 YELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLS 536
             L  L  LNLS N I  IE     +  RL  I+L    L  +    F  L  L  LN+S
Sbjct: 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 537 ENHLVWFDYAMVPG--NLKWLDIHGN 560
            N L   + ++     NL+ L +  N
Sbjct: 305 GNQLTTLEESVFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  233 bits (597), Expect = 5e-67
 Identities = 85/388 (21%), Positives = 144/388 (37%), Gaps = 61/388 (15%)

Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           Q   +        +    I   T        +L+L  N +  ++   F     L+ L+L 
Sbjct: 12  QDRAVLCHRKRFVAVPEGIPTET-------RLLDLGKNRIKTLNQDEFASFPHLEELELN 64

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
            N +  +E  AF +L+NL T+ L  NR+  I   +F GL  L+KL +S N +V +    F
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 407 KNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
           ++   LK L++  N +V I   A S L  L+ L L +  ++ I   +  +L  L  LRL 
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF 524
             NI  +       L  L+VL +S                 L ++ +    LT +     
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
            +L  L +LNLS N +                I G+ +  L                   
Sbjct: 245 RHLVYLRFLNLSYNPIST--------------IEGSMLHELLR----------------- 273

Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
                         ++ + +    +  V+P+ F   + L  +++  N +T L+ +     
Sbjct: 274 --------------LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH-- 317

Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
                  L    L  NP  CDC + W+ 
Sbjct: 318 ---SVGNLETLILDSNPLACDCRLLWVF 342

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  231 bits (591), Expect = 4e-66
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 30/345 (8%)

Query: 79  SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
              + V +P  + +  R L  L  N   ++        L          L+ L ++ + +
Sbjct: 19  HRKRFVAVPEGIPTETRLL-DLGKN--RIK-------TLNQDEFASFPHLEELELNENIV 68

Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
            ++    F +L N++TL L  N ++ I    F                 +G  +L  LD+
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF-----------------TGLSNLTKLDI 111

Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
           S NK+  L DY        L++L + +N++  I+  AF  L+SL  L +   +L S+P  
Sbjct: 112 SENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170

Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318
             S    +  +  +  ++  +    F +L +L VL++S        +      GL  L  
Sbjct: 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGL-NLTS 228

Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
           L++++  LT +     + LV+L+ L+L  N I  IE +    L  L  I L   ++  + 
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288

Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
            + F GL  L  L +S N L  ++   F +   L+ L L SN + 
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  194 bits (496), Expect = 1e-53
 Identities = 69/316 (21%), Positives = 129/316 (40%), Gaps = 51/316 (16%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           S++   +F N+++L  L + + +L  +P+ VF+GL N                       
Sbjct: 69  SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN----------------------- 105

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                   L  L+IS + I  + D +F  L N+++L +  N +  I    F         
Sbjct: 106 --------LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF--------- 148

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                   SG   L  L L    L ++   + ++    L  L L +  I+ I   +F  L
Sbjct: 149 --------SGLNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRL 199

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
             L++L IS    +           +++ +     +L  +       L  L  L+LS N 
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           +S+  I+ +    L+RL  + L   +L  ++   F+ L +L+ L++  N +  +E++ F 
Sbjct: 260 IST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 360 SLYNLHTIYLSENRIH 375
           S+ NL T+ L  N + 
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  140 bits (355), Expect = 3e-35
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 4/167 (2%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C    +     V C  ++   VP  IP +   + L  N  KT+    F    ++
Sbjct: 3   CPPRCEC----SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHL 58

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             L +N + +  +    FN L +L+ L L +N +       F  L  L++L + EN+I  
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           + +  F  L +L+ L++  N L        +  + L ++ L     +
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  106 bits (267), Expect = 4e-24
 Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 1/144 (0%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
             + +    +        +   N+ SL + +  +  +       L  L+ L+L  N I+ 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
             G     L +L E+ L   ++  +    F  L  L+VL + GN+L +      ++   L
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 900 RKVYLGNNPFSCSCATLQELQTWI 923
             + L +NP +C C  L  +    
Sbjct: 323 ETLILDSNPLACDC-RLLWVFRRR 345

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.4 bits (248), Expect = 1e-21
 Identities = 30/147 (20%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 767 QISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
           ++  +P  +       T + +  N    + +++F    N+ SL V ++ +  I ++ F+G
Sbjct: 91  RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
           L+SL+ L LE   +T        +L  L  L L+   I  I + +F  L  L+VL++   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 884 RLKSFRAFDLNTNSMLRKVYLGNNPFS 910
                   +      L  + + +   +
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 2e-20
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 767 QISTVPPRIPMDATHV---YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG 823
           +I  +   +  D  ++    +  N    I +  F G  ++  L +    +  I  +  + 
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQE-NRIEYIANGTFNALISLQVLQLDG 882
           L  L VL L +  I     Y F  L +L  L +     ++ +       L +L  L +  
Sbjct: 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITH 233

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
             L +     +     LR + L  NP S
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 5/154 (3%)

Query: 762 DCSEQQISTVPPRI--PMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
           +  +  +  +  R    +++   + L+     +IP         ++ L + +  I  I +
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193

Query: 819 QTFNGLSSLQVLHL-ENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
            +F  L  L+VL +     +          L  L+ L +    +  +       L+ L+ 
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRF 252

Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC 911
           L L  N + +     L+    L+++ L     + 
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  275 bits (704), Expect = 3e-80
 Identities = 130/617 (21%), Positives = 223/617 (36%), Gaps = 115/617 (18%)

Query: 79  SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
                 ++P ++    +NL  L+ N   L+        L   S     ELQVL++S   I
Sbjct: 15  MELNFYKIPDNLPFSTKNL-DLSFN--PLR-------HLGSYSFFSFPELQVLDLSRCEI 64

Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
           ++I D  + SL+++ TL L+ N I+ +    F+                           
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--------------------------- 97

Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG 258
                              LQ L      ++ +       L +L+ LN++ N + S    
Sbjct: 98  ---------------GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 259 LFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII 318
            +                       F  L  L  LDLSSN + S  I  T    L ++ +
Sbjct: 143 EY-----------------------FSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPL 177

Query: 319 ----LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY-IEDNAFLSLYNLHTIYL---- 369
               L+LS N +  I    FK++  L +L LRNN     +       L  L    L    
Sbjct: 178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 370 --SENRIHHITAHLFNGLYVLSKLTL---SNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
             +E  +         GL  L+         +  ++     F   + +    L S  I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
           +    S     + L+L   +  +      K+L++LT      N  GN  S +  +LPSLE
Sbjct: 297 VKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV--DLPSLE 350

Query: 485 VLNLSKNKIHQIEI--GTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVW 542
            L+LS+N +        +      L  + L  N +  ++  F  L QL  L+   ++L  
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 543 FDYAMV---PGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISELSIPN- 597
                V     NL +LDI   +     N   I +GL S++ L  + N   E     I   
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 598 --SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEF 655
             ++  L ++   ++ + P  F   S+L  +++ +N +  +           +  +L + 
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-----DRLTSLQKI 523

Query: 656 YLGGNPFDCDCSM-DWL 671
           +L  NP+DC C   D+L
Sbjct: 524 WLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  269 bits (690), Expect = 2e-78
 Identities = 142/669 (21%), Positives = 238/669 (35%), Gaps = 124/669 (18%)

Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           +       +     +++  +T         L+LS N L  + + +F     LQ LDL   
Sbjct: 10  ITYQCMELNFYKIPDNLPFST-------KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
            I  IED A+ SL +L T+ L+ N I  +    F+GL  L KL      L ++++    +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 409 CSALKELDLSSNAIVEI--PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
              LKEL+++ N I     P   S L  L+ LDL  N+I  I     + L Q+  L L  
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS- 181

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT--DINGVF 524
                              L+LS N ++ I+ G F K  RL  + L +NF +   +    
Sbjct: 182 -------------------LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
             LA L    L                        + +  L N       L+I+    ++
Sbjct: 222 QGLAGLEVHRLVLGEF--------RNEGNLEKFDKSALEGLCN-------LTIEEFRLAY 266

Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
                                 +         F   +N++   + +  I ++        
Sbjct: 267 L---------------------DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK------- 298

Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRG 704
               N       L    F         P +   +   +     K                
Sbjct: 299 DFSYNFGWQHLELVNCKFGQ------FPTLKLKSLKRLTFTSNKG--------------- 337

Query: 705 STHLPASEAAPS-QYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC 763
             +  +    PS ++L                D     ++    CS       +   +D 
Sbjct: 338 -GNAFSEVDLPSLEFL----------------DLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 764 SEQQISTVPPRIP--MDATHVYLDGNTFKTIPNH-VFIGRKNMLSLYVNNSQIEVILNQT 820
           S   + T+           H+    +  K +    VF+  +N++ L ++++   V  N  
Sbjct: 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 821 FNGLSSLQVLHLENNLITHFY-GYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQ 879
           FNGLSSL+VL +  N     +    F  L  L+ L L + ++E ++   FN+L SLQVL 
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 880 LDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
           +  N+LKS      +  + L+K++L  NP+ CSC  +  L  W+  NS K +     S  
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG- 559

Query: 940 IDESSPPIR 948
              S  P+R
Sbjct: 560 ---SGKPVR 565

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  261 bits (669), Expect = 1e-75
 Identities = 115/572 (20%), Positives = 214/572 (37%), Gaps = 74/572 (12%)

Query: 15  ESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQ 68
           E +  I+  C           N   +P +L             LD        + + SF 
Sbjct: 5   EVVPNITYQCM--------ELNFYKIPDNLPFSTKN-------LDLSFNPLRHLGSYSFF 49

Query: 69  NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLREL 128
           +   L+ L +S C++  +    +  L +L  L +    +Q        L  G+  GL  L
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSL 102

Query: 129 QVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECS 188
           Q L    +N+ S+ +     L  ++ LN++ N I+    L       +            
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTN----------- 150

Query: 189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQN----LHLENNEISQIAPNAFVALSSLRI 244
               L  LDLS NK++++     +    ++      L L  N ++ I P AF  +  L  
Sbjct: 151 ----LEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHK 204

Query: 245 LNISSNHL-VSLPEGLFSSCRDISEI------YAQKNSLVELSRGLFHKLEQL--LVLDL 295
           L + +N   +++ +        +         +  + +L +  +     L  L      L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
           +      + I    F  L  +   +L +  + R+   ++      Q L+L N   G    
Sbjct: 265 AYLDYYLDDII-DLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFP- 320

Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID--SKAFKNCSALK 413
              L L +L  +  + N+  +  +     L  L  L LS N L      S++    ++LK
Sbjct: 321 --TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS-FKNLQQLTDLRLVDNNIGNL 472
            LDLS N ++ + S    L  L+ LD   + + ++   S F +L+ L  L +   +    
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
            +G+   L SLEVL ++ N   +  +   F + + L  + L    L  +    F  L+ L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 531 LWLNLSENHLVWFDYAMVPG--NLKWLDIHGN 560
             LN++ N L      +     +L+ + +H N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (288), Expect = 2e-26
 Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 9/170 (5%)

Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
           C              C E     +P  +P    ++ L  N  + + ++ F     +  L 
Sbjct: 3   CVE----VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD 58

Query: 808 VNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANG 867
           ++  +I+ I +  +  LS L  L L  N I       F  L  L +L   E  +  + N 
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 868 TFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNNPFSCSCA 914
               L +L+ L +  N ++SF     F   TN  L  + L +N       
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSNKIQSIYC 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 31/105 (29%)

Query: 58  LDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL 117
              +     F  + +L  L +S C+L +L    F+ L +                     
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--------------------- 495

Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
                     LQVLN++S+ +KS+ D +F  L ++Q + L  N  
Sbjct: 496 ----------LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  271 bits (694), Expect = 3e-76
 Identities = 84/510 (16%), Positives = 176/510 (34%), Gaps = 55/510 (10%)

Query: 26  LNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITT--KSFQNIYSLEELKISNCKL 83
            + L      N    P    +++++       L + IT   K+ Q +  L+ +  +N   
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 84  VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD 143
                           + ++  +   D +K+ +    S   L++L  + + +    +   
Sbjct: 461 TYDN------------IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203
           D    L  +Q+LN++ N       L     R + + ++G K        ++I  + +N L
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK--------IQIFYMGYNNL 560

Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSC 263
                 + + K  +L  L   +N++  +   AF     L  L +  N +  +PE   +  
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 264 RDISEIYAQKNSLVELSRGL-FHKLEQLLVLDLSSNHLSSNHIDETTFIG---LIRLIIL 319
             +  +    N L  +        +  +  +D S N + S   + +  +     I    +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 320 NLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA 379
            LS NE+ +   + F     +  + L NN +  I +N+                      
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN--------------- 723

Query: 380 HLFNGLYVLSKLTLSNNLLVNI-DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL 438
             +   Y+L+ + L  N L ++ D         L  +D+S N     P+       LK  
Sbjct: 724 --YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 439 DLGE------NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
            +        N+I +           L  L++  N+I  +   +    P L +L+++ N 
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNP 838

Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDING 522
              I++ +           L  +   DI G
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  233 bits (596), Expect = 1e-63
 Identities = 93/617 (15%), Positives = 191/617 (30%), Gaps = 96/617 (15%)

Query: 109 WDKSKKLDL---VPG-SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD 164
           W+ +K+LD+    PG  LD    +  L+++    K    D    L  ++ L+   +S   
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 165 IDTLGFAVRRASAESN--------SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR 216
              L          S           +K+       L + DL  + +    +   I K  
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

Query: 217 RLQ----NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272
           R+      +    N I+ I   A   L+ L+I+  +++        +     +       
Sbjct: 422 RISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY---- 476

Query: 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA- 331
                E     +  L+ L  ++L +    +  + +     L  L  LN++ N        
Sbjct: 477 -AKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDF-LYDLPELQSLNIACNRGISAAQL 533

Query: 332 --------KTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLF 382
                           +Q   +  N++     +A L  +  L  +    N++ H+ A  F
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA--F 591

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA--LSELPFLKTLDL 440
                L+ L L  N +  I          ++ L  S N +  IP+      +  + ++D 
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
             N+I         ++                         +   + LS N+I +     
Sbjct: 652 SYNKIGSEGRNISCSMDDYK-------------------GINASTVTLSYNEIQKFPTEL 692

Query: 501 FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
           F     ++ I L +N +T I           + N                 L  +D+  N
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY--------------LLTTIDLRFN 738

Query: 561 YISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKS------VK 613
            ++SL++ +       + N+D S+N      ++    + ++   I +             
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 614 PHTFFDKSNLARVDIYANDITKLD----------------LTALRLKPVPQNKTLPEFYL 657
           P       +L ++ I +NDI K+D                  ++ +  V        + L
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

Query: 658 GGN--PFDCDCSMDWLP 672
             +       C    + 
Sbjct: 859 LYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (493), Expect = 9e-51
 Identities = 65/446 (14%), Positives = 145/446 (32%), Gaps = 47/446 (10%)

Query: 34  GSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSG 93
            S  ++    +      D ++           S+ N+  L ++++ NC  +    D    
Sbjct: 457 NSPFTYDNIAV---DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513

Query: 94  LRNLKRLTINTRNLQ--WDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV-FCSLA 150
           L  L+ L I                 +    D   ++Q+  +  +N++          + 
Sbjct: 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMV 573

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
            +  L+   N +R ++  G  V+                   L  L L +N++  + +  
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVK-------------------LTDLKLDYNQIEEIPEDF 614

Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVA-LSSLRILNISSNHLVSLPEGLFSS-----CR 264
                 +++ L   +N++  I        +  +  ++ S N + S    +  S       
Sbjct: 615 C-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS-----NHIDETTFIGLIRLIIL 319
           + S +    N + +    LF     +  + LS+N ++S         +  +     L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 320 NLSNNELTRI-DAKTFKDLVFLQRLDLRNNSIGYIEDNAF-----LSLYNLHTIYLSENR 373
           +L  N+LT + D      L +L  +D+  N                +    H      NR
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNR 793

Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSEL 432
           I             L +L + +N +  +D K       L  LD++ N  + I  +++   
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPY 850

Query: 433 PFLKTLDLGENQISKIENGSFKNLQQ 458
                  L  ++   I       +++
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 33/176 (18%), Positives = 54/176 (30%), Gaps = 23/176 (13%)

Query: 767 QISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFN 822
           QI  +P            +    N  K IPN         M S+  + ++I         
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665

Query: 823 GLS-----SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI-------ANGTFN 870
            +      +   + L  N I  F    F     +S + L  N +  I        +G + 
Sbjct: 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 871 ALISLQVLQLDGNRLKSF-RAFDLNTNSMLRKVYLGNNPFS------CSCATLQEL 919
               L  + L  N+L S    F   T   L  + +  N FS       + + L+  
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)

Query: 780 THVYLDGNTFKTIPNHV---------FIGRKNMLSLYVNNSQIEVI-LNQTFNGLSSLQV 829
             + +  N   +                    +   Y+  + +E    + +   +  L +
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 830 LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF- 888
           L   +N + H     F    KL++L L  N+IE I          ++ L    N+LK   
Sbjct: 578 LDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 889 RAFDLNTNSMLRKVYLGNNPFS 910
             F+  +  ++  V    N   
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.7 bits (142), Expect = 1e-08
 Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 13/146 (8%)

Query: 780 THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL-- 836
           T + L  N   ++ +         + ++ V+ +       Q  N  S L+   + +    
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDA 789

Query: 837 ----ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RA 890
               I   +         L +L +  N I  +          L +L +  N   S    +
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTP---QLYILDIADNPNISIDVTS 846

Query: 891 FDLNTNSMLRKVYLGNNPFSCSCATL 916
                 + +  +          C  L
Sbjct: 847 VCPYIEAGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 29/172 (16%), Positives = 54/172 (31%), Gaps = 35/172 (20%)

Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF-- 840
                  K I     I  K+   +    ++I  I ++    L+ LQ+++  N+  T+   
Sbjct: 408 INRNPEMKPIKKDSRISLKD-TQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 841 -----------------YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN 883
                                + NL+ L+++ L               L  LQ L +  N
Sbjct: 466 AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

Query: 884 RLKSFRAFDLNTNSM---------LRKVYLGNN-----PFSCSCATLQELQT 921
           R  S      +   +         ++  Y+G N     P S S   + +L  
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  249 bits (637), Expect = 3e-74
 Identities = 76/309 (24%), Positives = 139/309 (44%), Gaps = 39/309 (12%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
           D  +LDL +NK+  + D       + L  L L NN+IS+I+P AF  L  L  L +S N 
Sbjct: 53  DTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L  LPE +  + +   E+   +N + ++ + +F+ L Q++V++L +N L S+ I+   F 
Sbjct: 112 LKELPEKMPKTLQ---ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
           G+ +L  + +++  +T I                                 +L  ++L  
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPP---------------------------SLTELHLDG 201

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N+I  + A    GL  L+KL LS N +  +D+ +  N   L+EL L++N +V++P  L++
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 432 LPFLKTLDLGENQISKIENGSF------KNLQQLTDLRLVDNNI--GNLSSGMLYELPSL 483
             +++ + L  N IS I +  F            + + L  N +    +       +   
Sbjct: 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

Query: 484 EVLNLSKNK 492
             + L   K
Sbjct: 322 AAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  224 bits (573), Expect = 2e-65
 Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 24/310 (7%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
            LR++  S   L  +P+ L     D + +  Q N + E+  G F  L+ L  L L +N +
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
           S   I    F  L++L  L LS N+L  +  K  K L   Q L +  N I  +  + F  
Sbjct: 89  SK--ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QELRVHENEITKVRKSVFNG 143

Query: 361 LYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
           L  +  + L  N +    I    F G+  LS + +++  +  I      +   L EL L 
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLD 200

Query: 419 SNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
            N I ++ + +L  L  L  L L  N IS ++NGS  N   L +L L +N +  +  G L
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-L 259

Query: 478 YELPSLEVLNLSKNKIHQIEIGTF------EKNKRLAAIRLDSNFLTDIN---GVFTYLA 528
            +   ++V+ L  N I  I    F       K    + + L SN +         F  + 
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 529 QLLWLNLSEN 538
               + L   
Sbjct: 320 VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  170 bits (434), Expect = 5e-47
 Identities = 70/332 (21%), Positives = 133/332 (40%), Gaps = 59/332 (17%)

Query: 34  GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
              L  VP DL          T LLD      + I    F+N+ +L  L + N K+ ++ 
Sbjct: 40  DLGLEKVPKDLPP-------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 88  VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
              F+ L  L+RL ++ +N       +L  +P  +   + LQ L +  + I  +   VF 
Sbjct: 93  PGAFAPLVKLERLYLS-KN-------QLKELPEKM--PKTLQELRVHENEITKVRKSVFN 142

Query: 148 SLANIQTLNLSRNSIRD--IDTLGFAVRRASAESNSGEKIECSGGMD-LRILDLSHNKLR 204
            L  +  + L  N ++   I+   F                   GM  L  + ++   + 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQ------------------GMKKLSYIRIADTNIT 184

Query: 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCR 264
           T+           L  LHL+ N+I+++   +   L++L  L +S N + ++  G  ++  
Sbjct: 185 TIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240

Query: 265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI------GLIRLII 318
            + E++   N LV++  GL    + + V+ L +N++S+  I    F              
Sbjct: 241 HLRELHLNNNKLVKVPGGLAD-HKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSG 297

Query: 319 LNLSNNEL--TRIDAKTFKDLVFLQRLDLRNN 348
           ++L +N +    I   TF+ +     + L N 
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  164 bits (416), Expect = 1e-44
 Identities = 77/348 (22%), Positives = 131/348 (37%), Gaps = 82/348 (23%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
           ++  S+  L ++      D      LDL+NN I  I+D  F +L NLHT+ L  N+I  I
Sbjct: 35  VVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 91

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLK 436
           +   F  L  L +L LS N L  +  K  K    L+EL +  N I ++     + L  + 
Sbjct: 92  SPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMI 148

Query: 437 TLDLGENQI--SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
            ++LG N +  S IENG+F+ +++L+ +R+ D NI  +  G+    PSL  L+L  NKI 
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT 205

Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW 554
           +++  + +    LA + L  N ++        +      N                +L+ 
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISA-------VDNGSLANTP--------------HLRE 244

Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKP 614
           L ++ N +  +                                                P
Sbjct: 245 LHLNNNKLVKV------------------------------------------------P 256

Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKT-LPEFYLGGNP 661
               D   +  V ++ N+I+ +             K       L  NP
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  137 bits (348), Expect = 1e-35
 Identities = 67/266 (25%), Positives = 117/266 (43%), Gaps = 31/266 (11%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
            C  L+ +  S   + ++P  L   P    LDL  N+I++I++G FKNL+ L  L L++N
Sbjct: 30  QCH-LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
            I  +S G    L  LE L LSKN++ ++        K L  +R+  N +T +   VF  
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNG 143

Query: 527 LAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGL--SIK 578
           L Q++ + L  N L      +  G       L ++ I    I++      I  GL  S+ 
Sbjct: 144 LNQMIVVELGTNPLK--SSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLT 195

Query: 579 NLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
            L    N+I ++   S+    ++  L ++ N I +V   +  +  +L  + +  N + K+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255

Query: 637 DLTALRLKPVPQNKTLPEFYLGGNPF 662
                    +  +K +   YL  N  
Sbjct: 256 PGG------LADHKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (328), Expect = 7e-33
 Identities = 46/172 (26%), Positives = 70/172 (40%), Gaps = 15/172 (8%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C C      +  VV CS+  +  VP  +P D   + L  N    I +  F   KN
Sbjct: 24  VCPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKN 77

Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           + +L + N++I  I    F  L  L+ L+L  N +          L+   EL + EN I 
Sbjct: 78  LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEIT 134

Query: 863 YIANGTFNALISLQVLQLDGNRLKSF----RAFDLNTNSMLRKVYLGNNPFS 910
            +    FN L  + V++L  N LKS      AF       L  + + +   +
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK--LSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 5e-21
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 13/151 (8%)

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
            I+T+P  +P   T ++LDGN    +      G  N+  L ++ + I  + N +      
Sbjct: 182 NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF------NALISLQVLQL 880
           L+ LHL NN +    G    + + +  +YL  N I  I +  F          S   + L
Sbjct: 242 LRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300

Query: 881 DGNRLKSFR----AFDLNTNSMLRKVYLGNN 907
             N ++ +      F          V LGN 
Sbjct: 301 FSNPVQYWEIQPSTFRCVYV--RAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 94.3 bits (235), Expect = 8e-21
 Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 24/167 (14%)

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE--VILNQTFNGL 824
           Q+  +P ++P     + +  N    +   VF G   M+ + +  + ++   I N  F G+
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 825 SSLQV---------------------LHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             L                       LHL+ N IT         L  L++L L  N I  
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230

Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           + NG+      L+ L L+ N+L       L  +  ++ VYL NN  S
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNIS 276

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  249 bits (638), Expect = 2e-73
 Identities = 85/387 (21%), Positives = 157/387 (40%), Gaps = 44/387 (11%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
            +I+   ++ +R L   + +  FR+++ L+L + +I +I   AF    +++ L +  N +
Sbjct: 47  QKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
             LP  +F +   ++ +  ++N L  L RG+FH   +L  L +S+N+L    I++ TF  
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE--RIEDDTFQA 163

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
              L  L LS+N LT +D         L   ++  N +  +          +  +  S N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI-----PIAVEELDASHN 215

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
            I+ +   +                              L  L L  N + +    L   
Sbjct: 216 SINVVRGPVNVE---------------------------LTILKLQHNNLTDTA-WLLNY 247

Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
           P L  +DL  N++ KI    F  +Q+L  L + +N +  L +     +P+L+VL+LS N 
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNH 306

Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
           +  +E    +   RL  + LD N +  +    +    L  L LS N         +  N+
Sbjct: 307 LLHVERNQPQ-FDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNV 363

Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKN 579
               +           Y+++ GL  K 
Sbjct: 364 ARPAVDDADQ-HCKIDYQLEHGLCCKE 389

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  241 bits (616), Expect = 1e-70
 Identities = 82/392 (20%), Positives = 153/392 (39%), Gaps = 45/392 (11%)

Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
             ++H++            + L++ +I+   ++ +  LP  L  S               
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS--------------- 67

Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL 337
                      Q+ +L+L+   +    ID   F     +  L +  N +  +    F+++
Sbjct: 68  ---------FRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116

Query: 338 VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
             L  L L  N +  +    F +   L T+ +S N +  I    F     L  L LS+N 
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176

Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
           L ++D     +   L   ++S N +    S L+    ++ LD   N I+ +       L 
Sbjct: 177 LTHVDLSLIPS---LFHANVSYNLL----STLAIPIAVEELDASHNSINVVRGPVNVELT 229

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
            L   +L  NN+ + +   L   P L  ++LS N++ +I    F K +RL  + + +N L
Sbjct: 230 IL---KLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

Query: 518 TDINGVFTYLAQLLWLNLSENHLVWFDYAMVP-GNLKWLDIHGNYISSLNNYYEIKDGL- 575
             +N     +  L  L+LS NHL+  +        L+ L +  N I +L           
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHH 339

Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNN 607
           ++KNL  SHN     S  ++  +V    +++ 
Sbjct: 340 TLKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  224 bits (574), Expect = 7e-65
 Identities = 78/393 (19%), Positives = 142/393 (36%), Gaps = 48/393 (12%)

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
             +  D+  +  + +       I L    I+   N+ + ++ A        ++ L+L + 
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
            I  I+  AF   + +  +Y+  N I ++  H+F  + +L+ L L  N L ++    F N
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 409 CSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
              L  L +S+N +  I          L+ L L  N+++ ++     +L       +  N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 196

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
            +  L+        ++E L+ S N I+ +          L  ++L  N LTD        
Sbjct: 197 LLSTLAI-----PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT-AWLLNY 247

Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
             L+ ++LS N L    Y        L+ L I  N + +LN Y   +   ++K LD SHN
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHN 305

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
            +L +                                L  + +  N I  L L+      
Sbjct: 306 HLLHV-----------------------ERNQPQFDRLENLYLDHNSIVTLKLSTH---- 338

Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNT 678
                TL    L  N +DC+        +    
Sbjct: 339 ----HTLKNLTLSHNDWDCNSLRALFRNVARPA 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  194 bits (496), Expect = 1e-54
 Identities = 71/359 (19%), Positives = 142/359 (39%), Gaps = 46/359 (12%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             +      +   +E L +++ ++ E+    F+    +++L +    ++        L P
Sbjct: 58  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPP 110

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                +  L VL +  +++ S+   +F +   + TL++S N++  I+   F         
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------- 161

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                        L+ L LS N+L  +      +    L + ++  N +S +A       
Sbjct: 162 --------QATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAI-----P 204

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
            ++  L+ S N +  +   +      ++ +  Q N+L +           L+ +DLS N 
Sbjct: 205 IAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 259

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           L    I    F+ + RL  L +SNN L  ++    + +  L+ LDL +N + ++E N   
Sbjct: 260 LE--KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP- 315

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALKELDL 417
               L  +YL  N I  +     +    L  LTLS+N       +A F+N +     D 
Sbjct: 316 QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 2e-22
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%)

Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLS 805
           + +  +D  +    +D   Q +      I ++    V    +T + +P  +    + +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
           L +N+ QIE I    F    ++Q L++  N I +   + F N+  L+ L L+ N +  + 
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            G F+    L  L +  N L+          + L+ + L +N  +
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 98.2 bits (245), Expect = 9e-22
 Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 6/157 (3%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDA---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI 813
           N  +V      +  +P  +         + L+    + I  + F     +  LY+  + I
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 814 EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI 873
             +    F  +  L VL LE N ++      F N  KL+ L +  N +E I + TF A  
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 874 SLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           SLQ LQL  NRL      DL+    L    +  N  S
Sbjct: 166 SLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 77.4 bits (191), Expect = 6e-15
 Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
             V L  N  + I  H F+  + +  LY++N+++  + N     + +L+VL L +N + H
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLH 309

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                    ++L  LYL  N I  +   T +   +L+ L L  N         L  N  +
Sbjct: 310 VER-NQPQFDRLENLYLDHNSIVTLKLSTHH---TLKNLTLSHNDWDCNSLRALFRN--V 363

Query: 900 RKVYLGNNPFSCSC 913
            +  + +    C  
Sbjct: 364 ARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 2e-14
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 11/141 (7%)

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
           +++ V   +     H  +  N   T+   +      +  L  +++ I V+          
Sbjct: 176 RLTHVDLSLIPSLFHANVSYNLLSTLAIPI-----AVEELDASHNSINVVRGPVN---VE 227

Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
           L +L L++N +T        N   L E+ L  N +E I    F  +  L+ L +  NRL 
Sbjct: 228 LTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 887 SFRAFDLNTNSMLRKVYLGNN 907
           +           L+ + L +N
Sbjct: 286 ALNL-YGQPIPTLKVLDLSHN 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  235 bits (602), Expect = 2e-69
 Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 40/309 (12%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
           D  +LDL +N +  L         + L  L L NN+IS+I   AF  L  L+ L IS NH
Sbjct: 55  DTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           LV +P  L SS     E+    N + ++ +G+F  L  +  +++  N L ++  +   F 
Sbjct: 114 LVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
           GL +L  L +S  +LT I     +                            L+ ++L  
Sbjct: 171 GL-KLNYLRISEAKLTGIPKDLPE---------------------------TLNELHLDH 202

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N+I  I          L +L L +N +  I++ +      L+EL L +N +  +P+ L +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQ------QLTDLRLVDNNI--GNLSSGMLYELPSL 483
           L  L+ + L  N I+K+    F  +           + L +N +    +       +   
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322

Query: 484 EVLNLSKNK 492
             +     K
Sbjct: 323 LAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  180 bits (458), Expect = 3e-50
 Identities = 70/307 (22%), Positives = 122/307 (39%), Gaps = 30/307 (9%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
           ++  S+  L  +  +   D      LDL+NN I  +  + F  L +L+ + L  N+I  I
Sbjct: 37  VVQCSDLGLKAVPKEISPDT---TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLK 436
               F+ L  L KL +S N LV I      +   L EL +  N I ++P    S L  + 
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 437 TLDLGENQI--SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
            +++G N +  S  E G+F  L+ L  LR+ +  +  +   +     +L  L+L  NKI 
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQ 206

Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVP-GNL 552
            IE+    +  +L  + L  N +  I NG  ++L  L  L+L  N L      +     L
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL 266

Query: 553 KWLDIHGNYISSLNNY-----YEIKDGLSIKNLDASHNRILEISELSIPNSV-------E 600
           + + +H N I+ +                   +   +N    +    +  +         
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP---VPYWEVQPATFRCVTDRL 323

Query: 601 VLFINNN 607
            +   N 
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  171 bits (435), Expect = 4e-47
 Identities = 73/356 (20%), Positives = 121/356 (33%), Gaps = 82/356 (23%)

Query: 34  GSNLSFVPTDLITKLNIDCDATVLLD------SSITTKSFQNIYSLEELKISNCKLVELP 87
              L  VP ++          T LLD      S +    F+ +  L  L + N K+ ++ 
Sbjct: 42  DLGLKAVPKEISP-------DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 88  VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFC 147
              FS LR L++L I+ +N        L  +P +L     L  L I  + I+ +   VF 
Sbjct: 95  EKAFSPLRKLQKLYIS-KN-------HLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFS 144

Query: 148 SLANIQTLNLSRNSIRD--IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
            L N+  + +  N + +   +   F                   G+ L  L +S  KL  
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFD------------------GLKLNYLRISEAKLTG 186

Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRD 265
           +           L  LHL++N+I  I     +  S L  L +  N +  +  G  S    
Sbjct: 187 IPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--- 239

Query: 266 ISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE 325
                                L  L  L L +N LS           L  L ++ L  N 
Sbjct: 240 ---------------------LPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYLHTNN 275

Query: 326 LTRIDAKTFKDLVF------LQRLDLRNNSIGY--IEDNAFLSLYNLHTIYLSENR 373
           +T++    F  + F         + L NN + Y  ++   F  + +   I     +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  136 bits (345), Expect = 3e-35
 Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 26/262 (9%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           C  L+ +  S   +  +P  +S  P    LDL  N IS++    FK LQ L  L LV+N 
Sbjct: 33  CH-LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYL 527
           I  +       L  L+ L +SKN + +I          L  +R+  N +  +  GVF+ L
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 528 AQLLWLNLSENHLVWF---DYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL--SIKNLDA 582
             +  + +  N L        A     L +L I    ++       I   L  ++  L  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG------IPKDLPETLNELHL 200

Query: 583 SHNRILEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA 640
            HN+I  I    +     +  L + +N I+ ++  +      L  + +  N ++++    
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG- 259

Query: 641 LRLKPVPQNKTLPEFYLGGNPF 662
                +P  K L   YL  N  
Sbjct: 260 -----LPDLKLLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  125 bits (316), Expect = 2e-31
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 16/169 (9%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C C      +  VV CS+  +  VP  I  D T + L  N    +    F G ++
Sbjct: 26  MCPFGCHC------HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQH 79

Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           + +L + N++I  I  + F+ L  LQ L++  N +         +L    EL + +NRI 
Sbjct: 80  LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIR 136

Query: 863 YIANGTFNALISLQVLQLDGNRLKSF----RAFDLNTNSMLRKVYLGNN 907
            +  G F+ L ++  +++ GN L++      AFD      L  + +   
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD---GLKLNYLRISEA 182

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE--VILNQTFNGL 824
            +  +PP +P     + +  N  + +P  VF G +NM  + +  + +E        F+GL
Sbjct: 113 HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 825 S--------------------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
                                +L  LHL++N I      +     KL  L L  N+I  I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232

Query: 865 ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            NG+ + L +L+ L LD N+L    A  L    +L+ VYL  N  +
Sbjct: 233 ENGSLSFLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 97.8 bits (244), Expect = 6e-22
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 13/158 (8%)

Query: 760 VVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ 819
            +  SE +++ +P  +P     ++LD N  + I     +    +  L + ++QI +I N 
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235

Query: 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF------NALI 873
           + + L +L+ LHL+NN ++        +L+ L  +YL  N I  +    F          
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 874 SLQVLQLDGNRLKSFR----AFDLNTNSMLRKVYLGNN 907
               + L  N +  +      F   T+     +  GN 
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTD--RLAIQFGNY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  242 bits (619), Expect = 9e-69
 Identities = 102/518 (19%), Positives = 199/518 (38%), Gaps = 59/518 (11%)

Query: 135 SSNIKSISDDVFCSLANIQTLN-LSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDL 193
             N+K    +  C  +N+Q         I       +        +N             
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNN------------Q 53

Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
           +I+   ++ +R L     +  FR+++ L+L + +I +I   AF    +++ L +  N + 
Sbjct: 54  KIVTFKNSTMRKLPAAL-LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313
            LP  +F +   ++ +  ++N L  L RG+FH   +L  L +                  
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM------------------ 154

Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
                   SNN L RI+  TF+    LQ L L +N + +++ +   SL++ +   +S N 
Sbjct: 155 --------SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN---VSYNL 203

Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELP 433
           +  +   +      + +L  S+N +  +          L  L L  N + +    L   P
Sbjct: 204 LSTLAIPIA-----VEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA-WLLNYP 254

Query: 434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI 493
            L  +DL  N++ KI    F  +Q+L  L + +N +  L +     +P+L+VL+LS N +
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHL 313

Query: 494 HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK 553
             +E     +  RL  + LD N +  +    +    L  L LS N         +  N+ 
Sbjct: 314 LHVERNQP-QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370

Query: 554 WLDIHGNYISSLNNYYEIKDGLSIKNLDASH-NRILE-ISELSIPNSVEVLFINNNLIKS 611
              +           Y+++ GL  K  D  + +R+L+ I+  S+   V+      +   +
Sbjct: 371 RPAVDDADQ-HCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDT 429

Query: 612 VKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN 649
           +            +  +      +L+     L+   Q 
Sbjct: 430 INSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  229 bits (585), Expect = 3e-64
 Identities = 108/635 (17%), Positives = 198/635 (31%), Gaps = 81/635 (12%)

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
             +  D+  +  + +       I L    I+   N+ + ++ A        ++ L+L + 
Sbjct: 26  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
            I  I+  AF   + +  +Y+  N I ++  H+F  + +L+ L L  N L ++    F N
Sbjct: 86  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145

Query: 409 CSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
              L  L +S+N +  I          L+ L L  N+++ ++     +L       +  N
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYN 202

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
            +  L+        ++E L+ S N I+ +          L  ++L  N LTD        
Sbjct: 203 LLSTLA-----IPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT-AWLLNY 253

Query: 528 AQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
             L+ ++LS N L    Y        L+ L I  N + +LN Y   +   ++K LD SHN
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY--GQPIPTLKVLDLSHN 311

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
            +L +                                L  + +  N I  L L+      
Sbjct: 312 HLLHV-----------------------ERNQPQFDRLENLYLDHNSIVTLKLSTH---- 344

Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGS 705
                TL    L  N +DC+        +        ++       L++ +C     +  
Sbjct: 345 ----HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPY 400

Query: 706 THLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSE 765
                   A +  +                            CS     N   ++     
Sbjct: 401 LDRLLQYIALTSVVEKVQ-------------------RAQGRCSATDTINSVQSLSHYIT 441

Query: 766 QQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
           QQ              V       + + N      + +  L+              +GL+
Sbjct: 442 QQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLA 501

Query: 826 SLQVL-----------HLENNLITHFYGYEFDNLEKLSELYLQEN--RIEYIANGTFNAL 872
                                  T     E D  +K +E   QEN    + + N      
Sbjct: 502 RSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561

Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
              Q   L   ++K   A   N N   R+V   ++
Sbjct: 562 ELRQETSLKRQKVKQLEA-KKNRNPDTRRVSHHHH 595

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  220 bits (562), Expect = 3e-61
 Identities = 79/396 (19%), Positives = 156/396 (39%), Gaps = 32/396 (8%)

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN-- 303
               N     PE          +       +   ++ ++   E + + +       ++  
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 304 -HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
             +         ++ +LNL++ ++  ID   F     +Q+L +  N+I Y+  + F ++ 
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
            L  + L  N +  +   +F+    L+ L++SNN L  I+   F+  ++L+ L LSSN +
Sbjct: 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183

Query: 423 VEIP-----------------SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
             +                  S L+    ++ LD   N I+ +       L     L+L 
Sbjct: 184 THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTI---LKLQ 240

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
            NN+ + +   L   P L  ++LS N++ +I    F K +RL  + + +N L  +N    
Sbjct: 241 HNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 298

Query: 526 YLAQLLWLNLSENHLVWFDYAMVP-GNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDAS 583
            +  L  L+LS NHL+  +        L+ L +  N I +L           ++KNL  S
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL-----STHHTLKNLTLS 353

Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFD 619
           HN     S  ++  +V    +++        +    
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  210 bits (536), Expect = 8e-58
 Identities = 85/417 (20%), Positives = 154/417 (36%), Gaps = 64/417 (15%)

Query: 76  LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
               +  +     DV+ G  ++  L  N + + +  S    L    LD  R++++LN++ 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDI-TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84

Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
             I+ I    F     IQ L +  N+IR +    F                         
Sbjct: 85  LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ------------------------ 120

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
                                 L  L LE N++S +    F     L  L++S+N+L  +
Sbjct: 121 ------------------NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
            +  F +   +  +    N L  +   L   L      ++S N L       +T    I 
Sbjct: 163 EDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH---ANVSYNLL-------STLAIPIA 212

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
           +  L+ S+N +  +      +   L  L L++N++   +    L+   L  + LS N + 
Sbjct: 213 VEELDASHNSINVVRGPVNVE---LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267

Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFL 435
            I  H F  +  L +L +SNN LV ++    +    LK LDLS N ++ +     +   L
Sbjct: 268 KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRL 326

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKN 491
           + L L  N I  ++  +   L+ LT   L  N+   N    +   +    V +  ++
Sbjct: 327 ENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  200 bits (511), Expect = 1e-54
 Identities = 78/469 (16%), Positives = 169/469 (36%), Gaps = 58/469 (12%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             +      +   +E L +++ ++ E+    F+    +++L +    ++        L P
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-------YLPP 116

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                +  L VL +  +++ S+   +F +   + TL++S N++  I+   F         
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF--------- 167

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                        L+ L LS N+L  +      +    L + ++  N +S +A       
Sbjct: 168 --------QATTSLQNLQLSSNRLTHVDL----SLIPSLFHANVSYNLLSTLAI-----P 210

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
            ++  L+ S N +  +   +      ++ +  Q N+L +           L+ +DLS N 
Sbjct: 211 IAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE 265

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           L    I    F+ + RL  L +SNN L  ++    + +  L+ LDL +N + ++E N   
Sbjct: 266 LE--KIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQP- 321

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN---------LLVNIDSKAFKNCS 410
               L  +YL  N I  +     +    L  LTLS+N         L  N+   A  +  
Sbjct: 322 QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 378

Query: 411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
              ++D      +    +           +    + +    +         +  V +   
Sbjct: 379 QHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSH 438

Query: 471 NLSSGMLYELPSLEVLNLSKNKIH----QIEIGTFEKNKRLAAIRLDSN 515
            ++      L   E L    N++     Q+     ++ + L  +  + +
Sbjct: 439 YITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 98.1 bits (244), Expect = 5e-21
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%)

Query: 747 NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLS 805
           + +  +D  +    +D   Q +      I ++    V    +T + +P  +    + +  
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
           L +N+ QIE I    F    ++Q L++  N I +   + F N+  L+ L L+ N +  + 
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            G F+    L  L +  N L+          + L+ + L +N  +
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 94.2 bits (234), Expect = 8e-20
 Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 12/178 (6%)

Query: 767 QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSS 826
            I+ V   + ++ T + L  N          +    ++ + ++ +++E I+   F  +  
Sbjct: 222 SINVVRGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLK 886
           L+ L++ NN +     Y    +  L  L L  N + ++          L+ L LD N + 
Sbjct: 280 LERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQ-FDRLENLYLDHNSIV 337

Query: 887 SFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESS 944
           +     L+T+  L+ + L +N + C+   L+ L   +   +    D  D  C ID   
Sbjct: 338 TL---KLSTHHTLKNLTLSHNDWDCNS--LRALFRNVARPAV---DDADQHCKIDYQL 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  232 bits (594), Expect = 7e-67
 Identities = 97/399 (24%), Positives = 162/399 (40%), Gaps = 41/399 (10%)

Query: 179 SNSGEKIECSGG---------MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEIS 229
           S  G    C              +  +DLS N +  L + S  ++ + LQ L +E     
Sbjct: 9   SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETS-FSRLQDLQFLKVEQQTPG 67

Query: 230 Q-IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL--VELSRGLFHK 286
             I  N F  LSSL IL +  N  + L  G F+   ++  +   + +L    LS   F  
Sbjct: 68  LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV--FLQRLD 344
           L  L +L L  N++       + F+ + R  +L+L+ N++  I  +   +        L 
Sbjct: 128 LTSLEMLVLRDNNIKKIQ-PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 345 LRNNSIGYIEDN--------AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL----- 391
           L + ++  + +               ++ T+ LS N      A  F      +K+     
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 392 --------TLSNNLLVNIDSKAFKN--CSALKELDLSSNAIVEIPS-ALSELPFLKTLDL 440
                   +  +    + D+  FK    S +K  DLS + I  +     S    L+ L L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL 306

Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
            +N+I+KI++ +F  L  L  L L  N +G++ S M   L  LEVL+LS N I  +   +
Sbjct: 307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366

Query: 501 FEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
           F     L  + LD+N L  + +G+F  L  L  + L  N
Sbjct: 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  214 bits (546), Expect = 1e-60
 Identities = 93/413 (22%), Positives = 157/413 (38%), Gaps = 53/413 (12%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
            +  + +S   + EL    FS L++L+ L +  +         L +   +  GL  L +L
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG------LVIRNNTFRGLSSLIIL 84

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
            +  +    +    F  LAN++ L L++ ++      G   +  ++              
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-------------- 130

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS--LRILNISS 249
            L +L L  N ++ +   S     RR   L L  N++  I     +        +L +SS
Sbjct: 131 -LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID--- 306
             L  + E      +                 G   K   +  LDLS N    +      
Sbjct: 190 ITLQDMNEYWLGWEK----------------CGNPFKNTSITTLDLSGNGFKESMAKRFF 233

Query: 307 --------ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDN 356
                   ++  +     +  +  +      D  TFK L    ++  DL  + I  +  +
Sbjct: 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS 293

Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
            F    +L  + L++N I+ I  + F GL  L KL LS N L +IDS+ F+N   L+ LD
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353

Query: 417 LSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           LS N I  +   +   LP LK L L  NQ+  + +G F  L  L  + L  N 
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  200 bits (510), Expect = 9e-56
 Identities = 85/400 (21%), Positives = 153/400 (38%), Gaps = 53/400 (13%)

Query: 60  SSITTKSFQNIYSLEELKISNCKL-VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
           + +   SF  +  L+ LK+      + +  + F GL +L  L ++             L 
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLE 95

Query: 119 PGSLDGLRELQVLNISSSNIKS--ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
            G+ +GL  L+VL ++  N+    +S + F  L +++ L L  N+I+ I    F +    
Sbjct: 96  TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155

Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPN 234
                             +LDL+ NK++++   D       +    L L +  +  +   
Sbjct: 156 ----------------FHVLDLTFNKVKSICEEDLLNFQG-KHFTLLRLSSITLQDMNEY 198

Query: 235 --------AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
                        +S+  L++S N         F      ++I +           L   
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS-----------LILS 247

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIR--LIILNLSNNELTRIDAKTFKDLVFLQRLD 344
               +       +      D  TF GL    +   +LS +++  +    F     L++L 
Sbjct: 248 NSYNMGSSFGHTNFKD--PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
           L  N I  I+DNAF  L +L  + LS+N +  I + +F  L  L  L LS N +  +  +
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

Query: 405 AFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGEN 443
           +F     LKEL L +N +  +P      L  L+ + L  N
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  195 bits (498), Expect = 4e-54
 Identities = 101/533 (18%), Positives = 175/533 (32%), Gaps = 117/533 (21%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELP-FLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
           +          +  + ++P     LP  +  +DL  N I+++   SF  LQ L  L++  
Sbjct: 9   SVIG-YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ 63

Query: 467 NNIG-NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
              G  + +     L SL +L L  N+  Q+E G F                        
Sbjct: 64  QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG---------------------- 101

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
            LA L  L L++             NL    + GN+   L +                  
Sbjct: 102 -LANLEVLTLTQC------------NLDGAVLSGNFFKPLTS------------------ 130

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
                        +E+L + +N IK ++P +FF                   +       
Sbjct: 131 -------------LEMLVLRDNNIKKIQPASFFLN-----------------MRRF---- 156

Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGS 705
                 L    L  N     C  D L     +           ++ L ++  +       
Sbjct: 157 ----HVL---DLTFNKVKSICEEDLLNFQGKHF---------TLLRLSSITLQDMNEYWL 200

Query: 706 THLPASEAAPSQYLCPYDIHCFAL-CHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS 764
                     +  +   D+          +        T  ++    +  N  ++    +
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 765 EQQIS--TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
            +     T             L  +    +   VF    ++  L +  ++I  I +  F 
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
           GL+ L  L+L  N +       F+NL+KL  L L  N I  + + +F  L +L+ L LD 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 883 NRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
           N+LKS     FD  T+  L+K++L  NP+ CSC  +  L  W+  NS K +  
Sbjct: 381 NQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 431

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  172 bits (437), Expect = 4e-46
 Identities = 87/420 (20%), Positives = 157/420 (37%), Gaps = 76/420 (18%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRNNSI 350
            +DLS N ++   ++ET+F  L  L  L +        I   TF+ L  L  L L  N  
Sbjct: 34  YVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 351 GYIEDNAFLSLYNLHTIYLSENRIH--HITAHLFNGLYVLSKLTLSNNLLVNIDSK-AFK 407
             +E  AF  L NL  + L++  +    ++ + F  L  L  L L +N +  I     F 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 408 NCSALKELDLSSNAIVEIPS-----------ALSELPFLKTLDLGENQISKIENGSFKNL 456
           N      LDL+ N +  I              L  L  +   D+ E  +   + G+    
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVL-------------NLSKNKIHQIEIGTFE- 502
             +T L L  N      +   ++  +   +             +         +  TF+ 
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 503 -KNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW-----FDYAMVPGNLKWL 555
            +   +    L  + +  +   VF++   L  L L++N +       F       +L  L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL---THLLKL 328

Query: 556 DIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSV 612
           ++  N++ S+++   + + L  ++ LD S+N I  + + S     +++ L ++ N +KSV
Sbjct: 329 NLSQNFLGSIDSR--MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSM-DWL 671
            P   FD   L                           +L + +L  NP+DC C   D+L
Sbjct: 387 -PDGIFD--RL--------------------------TSLQKIWLHTNPWDCSCPRIDYL 417

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (319), Expect = 7e-31
 Identities = 40/177 (22%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
               CS             C  + +  VP  +P    +V L  N+   +    F   +++
Sbjct: 4   GTSECSV------IGYNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDL 56

Query: 804 LSLYVNNSQIEVIL-NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
             L V      +++ N TF GLSSL +L L+ N         F+ L  L  L L +  ++
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 863 --YIANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKVYLGNNPFSCSCA 914
              ++   F  L SL++L L  N +K  +    F          + L  N     C 
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR--FHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (270), Expect = 1e-24
 Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 31/267 (11%)

Query: 18  NRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELK 77
           N++   C    L    G +     T L        D            +     S+  L 
Sbjct: 164 NKVKSICE-EDLLNFQGKHF----TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 78  ISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL------DLVPGSLDGLR--ELQ 129
           +S     E     F       ++     +  ++           D    +  GL    ++
Sbjct: 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278

Query: 130 VLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
             ++S S I ++   VF    +++ L L++N I  ID   F                  G
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-----------------G 321

Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
              L  L+LS N L ++          +L+ L L  N I  +   +F+ L +L+ L + +
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSL 276
           N L S+P+G+F     + +I+   N  
Sbjct: 381 NQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 56/251 (22%)

Query: 16  SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEE 75
           S N    +    +     G+ +  +       +      T   D    T        ++ 
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 76  LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
             +S  K+  L   VFS   +L++LT+    +         +   +  GL  L  LN+S 
Sbjct: 280 CDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-------KIDDNAFWGLTHLLKLNLSQ 332

Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
           + + SI   +F +L  ++ L+LS N IR +    F                         
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF------------------------- 367

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
                                 L+ L L+ N++  +    F  L+SL+ + + +N     
Sbjct: 368 -----------------LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-- 408

Query: 256 PEGLFSSCRDI 266
                 SC  I
Sbjct: 409 -----CSCPRI 414

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  238 bits (608), Expect = 8e-67
 Identities = 80/481 (16%), Positives = 165/481 (34%), Gaps = 57/481 (11%)

Query: 57  LLDSSITT--KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKK 114
            L ++IT   K+   +  L +  + N   V   +       N +              ++
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA------------QQ 237

Query: 115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRR 174
                   D L++L  + + +    +       +L  +Q +N++ N     + L      
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL------ 291

Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
              + +     +   G  ++I+ + +N L+T    + + K ++L  L    N++      
Sbjct: 292 ---KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP 347

Query: 235 AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH-KLEQLLVL 293
           AF +   L  LN++ N +  +P         +  +    N L  +        +  +  +
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407

Query: 294 DLSSNHLSSNHIDETTFI-----GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           D S N + S        +       I +  +NLSNN++++   + F     L  ++L  N
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFK 407
            +  I  N+                        F   Y+L+ + L  N L  + D     
Sbjct: 468 MLTEIPKNSLKDENE-----------------NFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE------NQISKIENGSFKNLQQLTD 461
               L  +DLS N+  + P+       LK   +        N+  +           LT 
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
           L++  N+I  ++  +    P++ VL++  N    I++             L  +   DI 
Sbjct: 571 LQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIR 627

Query: 522 G 522
           G
Sbjct: 628 G 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (530), Expect = 9e-57
 Identities = 90/580 (15%), Positives = 180/580 (31%), Gaps = 105/580 (18%)

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI------------------NTRNL 107
           S  +   +  L +          D    L  L+ L +                     + 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 108 QWDKSKKLDLVPGSLDGLRELQVLNI------SSSNIKSISDDVFCSLANIQTLNLSRNS 161
           +  +  ++      +D        ++      S    KSI      +L + Q +    N+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ-IGQLSNN 194

Query: 162 IRDI-DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG--------- 211
           I  +   +                   +    LR   + ++                   
Sbjct: 195 ITFVSKAVM----------------RLT---KLRQFYMGNSPFVAENICEAWENENSEYA 235

Query: 212 ---------ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE----- 257
                        + L ++ + N       P    AL  ++++N++ N  +S  +     
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 258 ---GLFSSCRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGL 313
                      I  IY   N+L          K+++L +L+   N L    +    F   
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA--FGSE 352

Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL-SLYNLHTIYLSEN 372
           I+L  LNL+ N++T I A        ++ L   +N + YI +     S+  +  I  S N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 373 RIHHITAHLFNGLYV-------LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
            I  +    F+ L         +S + LSNN +     + F   S L  ++L  N + EI
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 426 P--------SALSELPFLKTLDLGENQISKI-ENGSFKNLQQLTDLRLVDNN-------I 469
           P                L ++DL  N+++K+ ++     L  L  + L  N+        
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP 532

Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQ 529
            N S+  L         +   N+  +           L  +++ SN +  +N        
Sbjct: 533 LNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPN 588

Query: 530 LLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNN 567
           +  L++ +N  +  D + V          +  +    +  
Sbjct: 589 ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  193 bits (493), Expect = 7e-52
 Identities = 78/568 (13%), Positives = 182/568 (32%), Gaps = 86/568 (15%)

Query: 109 WDKSKKLDL---VPG-SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD 164
           W+ +K+LD+    PG SL+    +  L++          D    L  ++ L L  +  + 
Sbjct: 60  WNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV 119

Query: 165 IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG-DYSGITKFRRLQNLHL 223
            + L                   S  M            +    DY     F  L    +
Sbjct: 120 NERLFGP-------------KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 224 ENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGL 283
            ++   +    +         +   SN++  + + +                        
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM----------------------- 203

Query: 284 FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL 343
             +L +L    + ++   +                 N    +  + +   + +L  L  +
Sbjct: 204 --RLTKLRQFYMGNSPFVA-------ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

Query: 344 DLRNNS-IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG--------LYVLSKLTLS 394
           ++ N   +  +      +L  +  I ++ NR         +            +  + + 
Sbjct: 255 EVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 395 NNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
            N L       + +    L  L+   N +     A      L +L+L  NQI++I     
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFC 373

Query: 454 KNLQQLTDLRLVDNNIGNLSSGM-LYELPSLEVLNLSKNKIHQIEIGTFE-------KNK 505
              +Q+ +L    N +  + +      +  +  ++ S N+I  ++   F+       K  
Sbjct: 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433

Query: 506 RLAAIRLDSNFLTD-INGVFTYLAQLLWLNLSENHLVWFDYAMVPG---------NLKWL 555
            +++I L +N ++     +F+  + L  +NL  N L       +            L  +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493

Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKSVK- 613
           D+  N ++ L++ +       +  +D S+N   +  ++    ++++   I N        
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNR 553

Query: 614 -----PHTFFDKSNLARVDIYANDITKL 636
                P       +L ++ I +NDI K+
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  167 bits (426), Expect = 2e-43
 Identities = 66/418 (15%), Positives = 140/418 (33%), Gaps = 72/418 (17%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDL------- 117
              + +  ++ + ++  + +     +    + L         +Q      + +       
Sbjct: 267 TFLKALPEMQLINVACNRGISGE-QLKDDWQALADAP-VGEKIQ-----IIYIGYNNLKT 319

Query: 118 --VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRA 175
             V  SL  +++L +L    + ++      F S   + +LNL+ N I +I         A
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIP--------A 370

Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
           +    +           +  L  +HNKL+ + +         +  +    NEI  +    
Sbjct: 371 NFCGFTE---------QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 236 FV-------ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGL----- 283
           F           ++  +N+S+N +   P+ LFS+   +S I    N L E+ +       
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481

Query: 284 --FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
             F     L  +DL  N L+    D+     L  L+ ++LS N  ++   +       L+
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLK 539

Query: 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401
              +RN                        NR              L++L + +N +  +
Sbjct: 540 GFGIRNQ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

Query: 402 DSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
           + K   N   +  LD+  N  + I  S +          L  ++   I      ++++
Sbjct: 582 NEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (343), Expect = 6e-33
 Identities = 55/417 (13%), Positives = 115/417 (27%), Gaps = 130/417 (31%)

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
           +F +   L  L ++  ++ E+P +                                    
Sbjct: 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQ----------------------------- 378

Query: 126 RELQVLNISSSNIKSISDDVF-CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
             ++ L+ + + +K I +     S++ +  ++ S N I  +D   F              
Sbjct: 379 --VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD------------- 423

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
                                        K   + +++L NN+IS+     F   S L  
Sbjct: 424 ----------------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           +N+  N L  +P+                          F     L  +DL  N L+   
Sbjct: 462 INLMGNMLTEIPKNSLKD-----------------ENENFKNTYLLTSIDLRFNKLTKL- 503

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
            D+     L  L+ ++LS N  ++   +       L+   +RN                 
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQ---------------- 546

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
                                          N  +    +    C +L +L + SN I +
Sbjct: 547 --------------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
           +   +   P +  LD+ +N    I+        +     L  +   ++      ++ 
Sbjct: 581 VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 11/141 (7%)

Query: 780 THVYLDGNTFKTIPNHVFIGR--------KNMLSLYVNNSQIEVI-LNQTFNGLSSLQVL 830
             + +  N   +        +        + +  +Y+  + ++   +  +   +  L +L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 831 HLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF-R 889
               N +       F +  KL+ L L  N+I  I          ++ L    N+LK    
Sbjct: 336 ECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394

Query: 890 AFDLNTNSMLRKVYLGNNPFS 910
            FD  + S++  +    N   
Sbjct: 395 IFDAKSVSVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.0 bits (164), Expect = 2e-11
 Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 23/163 (14%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG-LSSLQVLHLENNLIT 838
             + L  N    IP +     + + +L   +++++ I N      +S +  +    N I 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 839 HFYGYEFD-------NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF 891
              G  FD           +S + L  N+I       F+    L  + L GN L      
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 892 DLNTN-------SMLRKVYLGNNPFS--------CSCATLQEL 919
            L           +L  + L  N  +         +   L  +
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 11/135 (8%)

Query: 780 THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
           T + L  N    + +         ++ + ++ +       Q  N  S+L+   + N    
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDA 549

Query: 839 ---HFYGY---EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFD 892
                             L++L +  N I  +         ++ VL +  N   S     
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP---NISVLDIKDNPNISIDLSY 606

Query: 893 LNTNSMLRKVYLGNN 907
           +          L  +
Sbjct: 607 VCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 21/187 (11%), Positives = 54/187 (28%), Gaps = 28/187 (14%)

Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
            +   D+      +   +  +   P     D     ++ +  +               + 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 808 VNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY-------------------EFDNL 848
             ++ I  +       L+ L+  ++ N+                           ++DNL
Sbjct: 190 QLSNNITFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAF--------DLNTNSMLR 900
           + L+++ +              AL  +Q++ +  NR  S            D      ++
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308

Query: 901 KVYLGNN 907
            +Y+G N
Sbjct: 309 IIYIGYN 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  231 bits (591), Expect = 4e-66
 Identities = 67/480 (13%), Positives = 157/480 (32%), Gaps = 72/480 (15%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            QN    +  K+++  L +    +     N+K L ++   L         +    L    
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFT 58

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
           +L++LN+SS+ +    D    SL+ ++TL+L+ N ++++                     
Sbjct: 59  KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS---------------- 100

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
                 +  L  ++N +  +      ++ +  +N++L NN+I+ +        S ++ L+
Sbjct: 101 ------IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           +  N + ++                                + L  L+L  N +    + 
Sbjct: 151 LKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNFIYD--VK 185

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
                   +L  L+LS+N+L  +    F+    +  + LRNN +  IE  A     NL  
Sbjct: 186 GQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
             L  N  H  T   F         T++   +  +  +  + C+        +    ++P
Sbjct: 242 FDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 427 SALSE------LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
           +  ++            L    ++  ++E     N  +  ++  +      +   +    
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRK 359

Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
            +   L   K  + +        +  L      +    ++       + L  L       
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  207 bits (528), Expect = 7e-58
 Identities = 77/523 (14%), Positives = 169/523 (32%), Gaps = 77/523 (14%)

Query: 144 DVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL 203
           ++  +    +   ++ +S++                            +++ LDLS N L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLR-----------------QSAWNVKELDLSGNPL 46

Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSC 263
             +     +  F +L+ L+L +N + +       +LS+LR L++++N++  L        
Sbjct: 47  SQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------ 97

Query: 264 RDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSN 323
                                     +  L  ++N++S   +  +   G      + L+N
Sbjct: 98  -----------------------GPSIETLHAANNNISR--VSCSRGQGKKN---IYLAN 129

Query: 324 NELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLF 382
           N++T +          +Q LDL+ N I  +      +    L  + L  N I+ +   + 
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE 442
                L  L LS+N L  +    F++ + +  + L +N +V I  AL     L+  DL  
Sbjct: 190 --FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 443 NQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
           N          F   Q++  +      +  L+     E     + +        +     
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 502 E-----KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG--NLKW 554
           +     K K  A +    +    +       A+   ++  +         +         
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP----NSVEVL-FINNNLI 609
           L+     +             +   LD +  + +   EL       + +++L  I     
Sbjct: 365 LEQKKKALDEQ----VSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYE 420

Query: 610 KSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
           +          + +   D+Y +  T+L     RLK +     L
Sbjct: 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  201 bits (512), Expect = 1e-55
 Identities = 69/439 (15%), Positives = 146/439 (33%), Gaps = 47/439 (10%)

Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
               +  +I  ++ + L      L  S  ++ E+    N L ++S        +L +L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 296 SSN-----------------HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
           SSN                  L++N++     +    +  L+ +NN ++R+     +   
Sbjct: 66  SSNVLYETLDLESLSTLRTLDLNNNYV--QELLVGPSIETLHAANNNISRVSCSRGQ--- 120

Query: 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT-AHLFNGLYVLSKLTLSNNL 397
             + + L NN I  + D        +  + L  N I  +  A L      L  L L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
           + ++  +     + LK LDLSSN +  +         +  + L  N++  IE  + +  Q
Sbjct: 181 IYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK-ALRFSQ 237

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
            L    L  N   +  +   +   +  V  ++K  + ++     E+          +   
Sbjct: 238 NLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

Query: 518 TDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
            D+     +  +L+ L   E+ L              L   G+    L    E ++    
Sbjct: 297 EDLPA--PFADRLIALKRKEHAL--------------LSGQGSETERLEC--ERENQARQ 338

Query: 578 KNLDASHNRILEISE--LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
           + +DA   +   + +       +   L      +     +     + L      A    +
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE 398

Query: 636 LDLTALRLKPVPQNKTLPE 654
           L        P+   + + +
Sbjct: 399 LQHATEEQSPLQLLRAIVK 417

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  188 bits (479), Expect = 2e-51
 Identities = 62/354 (17%), Positives = 118/354 (33%), Gaps = 14/354 (3%)

Query: 310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
                R  I  ++++ L +  A   +    ++ LDL  N +  I          L  + L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
           S N ++         L  L  L L+NN +  +         +++ L  ++N I  +  + 
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR 118

Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-LPSLEVLNL 488
                 K + L  N+I+ + +       ++  L L  N I  ++   L     +LE LNL
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 489 SKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMV 548
             N I+ ++        +L  + L SN L  +   F   A + W++L  N LV  + A+ 
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 549 P-GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
              NL+  D+ GN                ++ +     + L            +      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
             + +          L R +         +   L  +   Q +   E       
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR-QREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  167 bits (424), Expect = 3e-44
 Identities = 70/480 (14%), Positives = 139/480 (28%), Gaps = 67/480 (13%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           S I+         LE L +S+  L E        L  L+ L +N   +Q           
Sbjct: 47  SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ----------- 93

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
             L     ++ L+ +++NI  +S          + + L+ N I  +  L    R      
Sbjct: 94  -ELLVGPSIETLHAANNNISRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSR---- 145

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                        ++ LDL  N++ T+           L++L+L+ N I  +        
Sbjct: 146 -------------VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--F 190

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           + L+ L++SSN L  +    F S   ++ I  + N LV + +      + L   DL  N 
Sbjct: 191 AKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNG 248

Query: 300 LSS---------------------NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
                                     +            + +        + A     L+
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 339 FLQR-----LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
            L+R     L  + +    +E     +      I   + +   +   +         L  
Sbjct: 309 ALKRKEHALLSGQGSETERLECERE-NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS-KIENGS 452
               L    S   +  + L      +   +E+  A  E   L+ L     +         
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
                 + D  +  +    L+             +L+        +      ++  A +L
Sbjct: 428 SVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS-ANATLQELVVREQNLASQL 486

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  161 bits (410), Expect = 2e-42
 Identities = 79/590 (13%), Positives = 173/590 (29%), Gaps = 122/590 (20%)

Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
            ++    +   + ++S+     +   S +N+  + LS N +  I+A        L  L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 394 SNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
           S+N+L        ++ S L+ LDL++N + E+       P ++TL    N IS++     
Sbjct: 66  SSNVLYET--LDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG 119

Query: 454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
           +  + +    L +N I  L          ++ L+L  N+I  +                 
Sbjct: 120 QGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL------------ 164

Query: 514 SNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKD 573
                           L  LNL  N +      +V   LK LD+  N ++ +        
Sbjct: 165 ----------AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-------- 206

Query: 574 GLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI 633
                                                      F   + +  + +  N +
Sbjct: 207 ----------------------------------------GPEFQSAAGVTWISLRNNKL 226

Query: 634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLD 693
             ++      K +  ++ L  F L GN F C    D+        + +  +   K+   +
Sbjct: 227 VLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQN 279

Query: 694 NVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHD 753
              C +                                CCE      ++  P        
Sbjct: 280 EEECTVPTLGHYGAY-----------------------CCE------DLPAPFADRLIAL 310

Query: 754 QNWNTNVVDCSEQQISTVPPRIPMDA--THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNS 811
           +     ++     +   +       A    +      ++T+ + V + ++  ++L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGT-FN 870
            ++  ++      + L     +            +    L  L     R E +       
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHA-TEEQSPLQLLRAIVKRYEEMYVEQQSV 429

Query: 871 ALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
              +++   +  ++       +     +  +  L     + + ATLQEL 
Sbjct: 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA---LASANATLQELV 476

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
           +++     +  ++  + ++ +         +   + EL L  N +  I+         L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           +L L  N L      +  +   LR + L NN   
Sbjct: 62  LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 1e-12
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
             V +S ++  L        +++ L L  N ++     +     KL  L L  N +    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-SCATLQELQT 921
           +    +L +L+ L L+ N ++      L     +  ++  NN  S  SC+  Q  + 
Sbjct: 75  D--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  220 bits (563), Expect = 2e-62
 Identities = 108/510 (21%), Positives = 179/510 (35%), Gaps = 77/510 (15%)

Query: 128 LQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
           L    I+    I  I  D   +LA      L + ++ D  +                   
Sbjct: 3   LGSATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQTDLD-------------- 46

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
                 +  L      ++++    G+     L  ++  NN+++ I P     L+ L  + 
Sbjct: 47  -----QVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 96

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           +++N +  +                               L  L  L L +N ++    D
Sbjct: 97  MNNNQIADITP--------------------------LANLTNLTGLTLFNNQIT----D 126

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
                 L  L  L LS+N ++ I A     L  LQ+L   N            +L  L  
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---PLANLTTLER 181

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           + +S N++  I+      L  L  L  +NN + +I        + L EL L+ N + +I 
Sbjct: 182 LDISSNKVSDISV--LAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIG 237

Query: 427 SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL 486
           + L+ L  L  LDL  NQIS +       L +LT+L+L  N I N+S   L  L +L  L
Sbjct: 238 T-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 292

Query: 487 NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYA 546
            L++N++  I        K L  + L  N ++DI+   + L +L  L    N +      
Sbjct: 293 ELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSSL 349

Query: 547 MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
               N+ WL    N IS L     + +   I  L  +             N      + N
Sbjct: 350 ANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406

Query: 607 NLIKSVKPHTFFDKSNLARVDIYANDITKL 636
                + P T  D  +    DI  N  +  
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  215 bits (551), Expect = 5e-61
 Identities = 98/430 (22%), Positives = 188/430 (43%), Gaps = 32/430 (7%)

Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
               ++  I+QI  +   AL+      +   ++        +    ++ + A +  +  +
Sbjct: 6   ATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI 61

Query: 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF 339
                  L  L  ++ S+N L+    D T    L +L+ + ++NN++  I      +L  
Sbjct: 62  DG--VEYLNNLTQINFSNNQLT----DITPLKNLTKLVDILMNNNQIADITP--LANLTN 113

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           L  L L NN I  I+     +L NL+ + LS N I  I+A   +GL  L +L+  N +  
Sbjct: 114 LTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV-- 167

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
             D K   N + L+ LD+SSN + +I   L++L  L++L    NQIS I       L  L
Sbjct: 168 -TDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNL 223

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
            +L L  N + ++ +  L  L +L  L+L+ N+I  +         +L  ++L +N +++
Sbjct: 224 DELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISN 279

Query: 520 INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579
           I+     L  L  L L+EN L          NL +L ++ N IS ++    +     ++ 
Sbjct: 280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT---KLQR 335

Query: 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
           L   +N++ ++S L+   ++  L   +N I  + P    + + + ++ +     T   + 
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 640 ALRLKPVPQN 649
                 +P  
Sbjct: 394 YKANVSIPNT 403

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  213 bits (544), Expect = 4e-60
 Identities = 110/495 (22%), Positives = 187/495 (37%), Gaps = 94/495 (18%)

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
           +   L E     +  +N+          L  + TL   R  I+ ID + +          
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLN-------- 68

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
                      +L  ++ S+N+L  +   + +    +L ++ + NN+I+ I P     L+
Sbjct: 69  -----------NLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
           +L  L + +N +  +                               L  L  L+LSSN +
Sbjct: 113 NLTGLTLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTI 146

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
           S    D +   GL  L  L+  N      D K   +L  L+RLD+ +N +  I       
Sbjct: 147 S----DISALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSDIS--VLAK 197

Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           L NL ++  + N+I  IT      L  L +L+L+ N L +I +    + + L +LDL++N
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANN 253

Query: 421 AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
            I  +   LS L  L  L LG NQIS I       L  LT+L L +N + ++S   +  L
Sbjct: 254 QISNLA-PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308

Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
            +L  L L  N I  I         +L  +   +N ++D++     L  + WL+   N +
Sbjct: 309 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQI 365

Query: 541 VWFDYAMVPGNLKWLDIHGNYISSLNNYY---------------------EIKDGLSIKN 579
                      +  L ++    ++    Y                      I DG S   
Sbjct: 366 SDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 580 LDASHNRILEISELS 594
            D + N     +E+S
Sbjct: 426 PDITWNLPSYTNEVS 440

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  188 bits (479), Expect = 2e-51
 Identities = 95/465 (20%), Positives = 180/465 (38%), Gaps = 44/465 (9%)

Query: 57  LLDSSIT-TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL 115
           L  +++T T S  ++  +  L+     +  +       L NL ++  +   L        
Sbjct: 31  LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLT------- 81

Query: 116 DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVR 173
           D+ P  L  L +L  + ++++ I  I+     +L N+  L L  N I DID L     + 
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLN 137

Query: 174 RASAESNSGEKIECSGGMD-LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA 232
           R    SN+   I    G+  L+ L   +       D   +     L+ L + +N++S I+
Sbjct: 138 RLELSSNTISDISALSGLTSLQQLSFGNQVT----DLKPLANLTTLERLDISSNKVSDIS 193

Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
                 L++L  L  ++N +  +         ++ E+    N L ++       L  L  
Sbjct: 194 V--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTD 247

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
           LDL++N +S    +     GL +L  L L  N+++ I       L  L  L+L  N +  
Sbjct: 248 LDLANNQIS----NLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
           I      +L NL  + L  N I  I+    + L  L +L   NN + ++ S    N + +
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNI 355

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
             L    N I ++   L+ L  +  L L +   +        N+        V N  G L
Sbjct: 356 NWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSI---PNTVKNVTGAL 411

Query: 473 SS-GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
            +   + +  S    +++ N        ++  ++ +   +  + F
Sbjct: 412 IAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (383), Expect = 6e-39
 Identities = 72/384 (18%), Positives = 151/384 (39%), Gaps = 36/384 (9%)

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
              N+ +L  L + N ++ ++       L NL RL +++  +             +L GL
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS---------DISALSGL 155

Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF--AVRRASAESNSGE 183
             LQ L+  +  +  +      +L  ++ L++S N + DI  L     +    A +N   
Sbjct: 156 TSLQQLSFGN-QVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS 212

Query: 184 KIECSGGM-DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
            I   G + +L  L L+ N+L+ +     +     L +L L NN+IS +AP     L+ L
Sbjct: 213 DITPLGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
             L + +N + ++     +    ++ +   +N L ++S      L+ L  L L  N++S 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNIS- 322

Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY 362
              D +    L +L  L   NN+++ + +    +L  +  L   +N I  +      +L 
Sbjct: 323 ---DISPVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLT--PLANLT 375

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
            +  + L++    +   +    + + + +      L+   +    +  +  E D++ N  
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTEPDITWNLP 433

Query: 423 VEIPSALSELPFLKTLDLGENQIS 446
                         T+  G    S
Sbjct: 434 SYTNEVSYTFSQPVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 70.0 bits (172), Expect = 2e-12
 Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
           T + L  N    +      G   +  L +  +QI  I      GL++L  L L  N +  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                  NL+ L+ L L  N I  I+    ++L  LQ L    N++    +    TN  +
Sbjct: 302 IS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTN--I 355

Query: 900 RKVYLGNNPFS 910
             +  G+N  S
Sbjct: 356 NWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 2e-11
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 12/150 (8%)

Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
                QI+ + P   +     + L  NT   I      G  ++  L   N   ++     
Sbjct: 118 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLK---P 172

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
              L++L+ L + +N ++         L  L  L    N+I  I       L +L  L L
Sbjct: 173 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228

Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           +GN+LK        TN  L  + L NN  S
Sbjct: 229 NGNQLKDIGTLASLTN--LTDLDLANNQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.8 bits (161), Expect = 4e-11
 Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIE 814
                   +  ++    +  +D  T +  D    K+I     +    N+  +  +N+Q+ 
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLT 81

Query: 815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALIS 874
            I       L+ L  + + NN I         NL  L+ L L  N+I  I       L +
Sbjct: 82  DITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTN 135

Query: 875 LQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
           L  L+L  N +    A    T+  L+++  GN 
Sbjct: 136 LNRLELSSNTISDISALSGLTS--LQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 13/120 (10%)

Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
           +    ++ I  I   T   L+      L    +T        +L++++ L      I+ I
Sbjct: 6   ATITQDTPINQI--FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI 61

Query: 865 ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCATLQEL 919
                  L +L  +    N+L         T   L  + + NN  +      +   L  L
Sbjct: 62  DG--VEYLNNLTQINFSNNQLTDITPLKNLTK--LVDILMNNNQIADITPLANLTNLTGL 117

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  212 bits (541), Expect = 5e-61
 Identities = 91/391 (23%), Positives = 160/391 (40%), Gaps = 46/391 (11%)

Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
              L    + I  I  D    LA      L + S+ D+ T                    
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQEELES-------------- 45

Query: 188 SGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
                +  L ++  K+ ++    GI     L+ L+L  N+I+ I+P     L  L  L I
Sbjct: 46  -----ITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYI 95

Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
            +N +  +      +  ++ E+Y  ++++ ++S      L ++  L+L +NH  S+    
Sbjct: 96  GTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL--- 148

Query: 308 TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTI 367
           +    +  L  L ++ +++  +      +L  L  L L  N I  I      SL +LH  
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYF 204

Query: 368 YLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS 427
               N+I  IT      +  L+ L + NN + ++      N S L  L++ +N I +I  
Sbjct: 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISDIN- 259

Query: 428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLN 487
           A+ +L  LK L++G NQIS I      NL QL  L L +N +GN    ++  L +L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
           LS+N I  I         ++ +    +  + 
Sbjct: 318 LSQNHITDIR--PLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  190 bits (485), Expect = 2e-53
 Identities = 79/352 (22%), Positives = 149/352 (42%), Gaps = 26/352 (7%)

Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL 345
            L + +   L    ++    D  T   L  +  L ++  ++  I     + L  L+ L+L
Sbjct: 20  DLAEGIRAVLQKASVT----DVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNL 73

Query: 346 RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA 405
             N I  I      +L  L  +Y+  N+I  I+A     L  L +L L+ + + +I    
Sbjct: 74  NGNQITDIS--PLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDIS--P 127

Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
             N + +  L+L +N  +   S LS +  L  L + E+++  +      NL  L  L L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
            N I ++S   L  L SL       N+I  I         RL ++++ +N +TD++    
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP-LA 240

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
            L+QL WL +  N +   +       LK L++  N IS ++    + +   + +L  ++N
Sbjct: 241 NLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNN 297

Query: 586 RI--LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
           ++   ++  +    ++  LF++ N I  ++P      S +   D     I K
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  174 bits (443), Expect = 6e-48
 Identities = 87/392 (22%), Positives = 149/392 (38%), Gaps = 74/392 (18%)

Query: 57  LLDSSITT-KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKL 115
           L  +S+T   + + + S+ +L ++  K+  +       L NL+ L +N   +        
Sbjct: 29  LQKASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQIT------- 79

Query: 116 DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRA 175
           D+ P  L  L +L  L I ++ I  IS     +L N++ L L+ ++I DI  L    +  
Sbjct: 80  DISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTK-- 133

Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
                            +  L+L  N    L D S ++    L  L +  +++  + P  
Sbjct: 134 -----------------MYSLNLGANHN--LSDLSPLSNMTGLNYLTVTESKVKDVTP-- 172

Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
              L+ L  L+++ N +  +                               L  L     
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--------------------------LASLTSLHYFTA 206

Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
             N ++    D T    + RL  L + NN++T +      +L  L  L++  N I  I  
Sbjct: 207 YVNQIT----DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN- 259

Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
            A   L  L  + +  N+I  I+    N L  L+ L L+NN L N D +     + L  L
Sbjct: 260 -AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 416 DLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
            LS N I +I   L+ L  + + D     I K
Sbjct: 317 FLSQNHITDIR-PLASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  168 bits (428), Expect = 5e-46
 Identities = 72/369 (19%), Positives = 146/369 (39%), Gaps = 50/369 (13%)

Query: 295 LSSNHLSSNHIDETTFI-GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI 353
            ++       I++      L   I   L    +T +   T ++L  + +L +    +  I
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDV--VTQEELESITKLVVAGEKVASI 59

Query: 354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
           +   +L+  NL  + L+ N+I  I+    + L  L+ L +  N + +I   A +N + L+
Sbjct: 60  QGIEYLT--NLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLR 113

Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQLTDLRLVDNNIGNL 472
           EL L+ + I +I   L+ L  + +L+LG N  +S +      N+  L  L + ++ + ++
Sbjct: 114 ELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV 170

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLW 532
           +   +  L  L  L+L+ N+I  I          L       N +TDI      +A +  
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDIS--PLASLTSLHYFTAYVNQITDITP----VANMT- 221

Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
                              L  L I  N I+ L+    + +   +  L+   N+I +I+ 
Sbjct: 222 ------------------RLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDINA 260

Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
           +     +++L + +N I  +      + S L  + +  N +   D+  +          L
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG-----GLTNL 313

Query: 653 PEFYLGGNP 661
              +L  N 
Sbjct: 314 TTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 69.1 bits (170), Expect = 2e-12
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
             + +  N    +          +  L +  +QI  I       L+ L++L++ +N I+ 
Sbjct: 224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                 +NL +L+ L+L  N++          L +L  L L  N +   R     +   +
Sbjct: 280 IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK--M 335

Query: 900 RKVYLGNNPFS 910
                 N    
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 1e-11
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
            ++ +  +  K +         ++ SL +N +QIE I       L+SL       N IT 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                  N+ +L+ L +  N+I  ++      L  L  L++  N++    A    T   L
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTK--L 267

Query: 900 RKVYLGNNPFSC--SCATLQELQT-WIIDN 926
           + + +G+N  S       L +L + ++ +N
Sbjct: 268 KMLNVGSNQISDISVLNNLSQLNSLFLNNN 297

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
           T + + G    +I         N+  L +N +QI  I     + L  L  L++  N IT 
Sbjct: 47  TKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITD 102

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                  NL  L ELYL E+ I  I+      L  +  L L  N   S  +  L+  + L
Sbjct: 103 IS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGL 157

Query: 900 RKVYLGNN 907
             + +  +
Sbjct: 158 NYLTVTES 165

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 9/88 (10%)

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
           G ++L  L    N I         +L +     LQ+  +  +   T   L S+  L + G
Sbjct: 1   GAATLATLPAPINQIF-----PDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAG 53

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            ++ S +  +  TN  L  + L  N  +
Sbjct: 54  EKVASIQGIEYLTN--LEYLNLNGNQIT 79

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  213 bits (543), Expect = 3e-60
 Identities = 78/261 (29%), Positives = 117/261 (44%), Gaps = 9/261 (3%)

Query: 233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV 292
           P+     +    +     +L  +P+G+ +   +   +   +N +  +    F  L  L +
Sbjct: 36  PSVCSCSNQFSKVICVRKNLREVPDGIST---NTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
           L LS NH+ +  I+   F GL  L  L L +N LT I    F  L  L+ L LRNN I  
Sbjct: 93  LQLSRNHIRT--IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 353 IEDNAFLSLYNLHTIYLSE-NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
           I   AF  + +L  + L E  R+ +I+   F GL  L  L L+   L  I          
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIK 208

Query: 412 LKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
           L ELDLS N +  I   +   L  L+ L + ++QI  IE  +F NLQ L ++ L  NN+ 
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 471 NLSSGMLYELPSLEVLNLSKN 491
            L   +   L  LE ++L  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  200 bits (511), Expect = 6e-56
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 10/259 (3%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
           CS       +      LR +    GI      + L+L  N+I  I  N+F  L  L IL 
Sbjct: 39  CSCSNQFSKVICVRKNLREVP--DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQ 94

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           +S NH+ ++  G F+   +++ +    N L  +  G F  L +L  L L +N + S  I 
Sbjct: 95  LSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES--IP 152

Query: 307 ETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
              F  +  L  L+L     L+ I    F+ L  L+ L+L   ++  I       L  L 
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLD 210

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
            + LS N +  I    F GL  L KL +  + +  I+  AF N  +L E++L+ N +  +
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270

Query: 426 P-SALSELPFLKTLDLGEN 443
           P    + L  L+ + L  N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  198 bits (504), Expect = 4e-55
 Identities = 77/266 (28%), Positives = 119/266 (44%), Gaps = 20/266 (7%)

Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           Q   +     +L    + I   T        +LNL  N++  I   +FK L  L+ L L 
Sbjct: 44  QFSKVICVRKNLREVPDGISTNT-------RLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
            N I  IE  AF  L NL+T+ L +NR+  I    F  L  L +L L NN + +I S AF
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156

Query: 407 KNCSALKELDLSS-NAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
               +L+ LDL     +  I   A   L  L+ L+L    + +I   +   L +L +L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDL 214

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGV 523
             N++  +  G    L  L+ L + +++I  IE   F+  + L  I L  N LT + + +
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 524 FTYLAQLLWLNLSEN------HLVWF 543
           FT L  L  ++L  N       ++W 
Sbjct: 275 FTPLHHLERIHLHHNPWNCNCDILWL 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  166 bits (421), Expect = 3e-44
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 57/298 (19%)

Query: 79  SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
               L E+P  + +  R L        NL  ++ + +     S   LR L++L +S ++I
Sbjct: 51  VRKNLREVPDGISTNTRLL--------NLHENQIQIIK--VNSFKHLRHLEILQLSRNHI 100

Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
           ++I    F  LAN+ TL L  N +  I    F                      L+ L L
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAF-----------------VYLSKLKELWL 143

Query: 199 SHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSSLRILNISSNHLVSLPE 257
            +N + ++  Y+   +   L+ L L E   +S I+  AF  LS+LR LN++  +L  +P 
Sbjct: 144 RNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202

Query: 258 GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
                                        L +L  LDLS NHLS+  I   +F GL+ L 
Sbjct: 203 --------------------------LTPLIKLDELDLSGNHLSA--IRPGSFQGLMHLQ 234

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
            L +  +++  I+   F +L  L  ++L +N++  +  + F  L++L  I+L  N  +
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  154 bits (390), Expect = 4e-40
 Identities = 63/286 (22%), Positives = 121/286 (42%), Gaps = 47/286 (16%)

Query: 409 CSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           CS    ++      + E+P  +S     + L+L ENQI  I+  SFK+L+ L  L+L  N
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
           +I  +  G    L +L  L L  N++  I  G F    +L  + L +N +  I +  F  
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHN 585
           +  L  L+L E                        +S ++      +GL +++ L+ +  
Sbjct: 159 IPSLRRLDLGEL---------------------KRLSYISE--GAFEGLSNLRYLNLAMC 195

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT----------- 634
            + EI  L+    ++ L ++ N + +++P +F    +L ++ +  + I            
Sbjct: 196 NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 635 ---KLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCSMDWLP 672
              +++L    L  +P +       L   +L  NP++C+C + WL 
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLS 301

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  151 bits (382), Expect = 4e-39
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 49/285 (17%)

Query: 21  SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEE 75
            V C           NL  VP        I  +  +L L       I   SF+++  LE 
Sbjct: 47  KVICV--------RKNLREVPD------GISTNTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 76  LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
           L++S   +  + +  F+GL NL  L +    L         +  G+   L +L+ L + +
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSKLKELWLRN 145

Query: 136 SNIKSISDDVFCSLANIQTLNLSR-NSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-L 193
           + I+SI    F  + +++ L+L     +  I    F                   G+  L
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE------------------GLSNL 187

Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
           R L+L+   LR + + + +    +L  L L  N +S I P +F  L  L+ L +  + + 
Sbjct: 188 RYLNLAMCNLREIPNLTPLI---KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
            +    F + + + EI    N+L  L   LF  L  L  + L  N
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  141 bits (357), Expect = 8e-36
 Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 28/219 (12%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
            +I   +F  + +L  L++ + +L  +P   F  L  LK L +    ++        +  
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-------SIPS 153

Query: 120 GSLDGLRELQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
            + + +  L+ L++     +  IS+  F  L+N++ LNL+  ++R+I  L   ++     
Sbjct: 154 YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK----- 208

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
                         L  LDLS N L  +   S       LQ L +  ++I  I  NAF  
Sbjct: 209 --------------LDELDLSGNHLSAIRPGS-FQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
           L SL  +N++ N+L  LP  LF+    +  I+   N   
Sbjct: 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 2e-26
 Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 17/203 (8%)

Query: 767 QISTVPPRIPMDATH-VYLD---GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
            I ++P            LD         I    F G  N+  L +    +  I      
Sbjct: 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLT 204

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
            L  L  L L  N ++      F  L  L +L++ +++I+ I    F+ L SL  + L  
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942
           N L             L +++L +NP++C+C  +  L  WI D +          C    
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPWNCNC-DILWLSWWIKDMAPSNTA-CCARC---- 318

Query: 943 SSPPIRK-----EIDLNSTTCTE 960
           ++PP  K     E+D N  TC  
Sbjct: 319 NTPPNLKGRYIGELDQNYFTCYA 341

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (278), Expect = 1e-25
 Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 28/169 (16%)

Query: 740 CEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIG 799
              TCP  CSC +      + V C  + +  VP  I  +   + L  N  + I       
Sbjct: 31  SAQTCPSVCSCSN----QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKV----- 81

Query: 800 RKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN 859
                               +F  L  L++L L  N I       F+ L  L+ L L +N
Sbjct: 82  -------------------NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 860 RIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
           R+  I NG F  L  L+ L L  N ++S  ++  N    LR++ LG   
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  202 bits (515), Expect = 2e-56
 Identities = 66/260 (25%), Positives = 108/260 (41%), Gaps = 12/260 (4%)

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
            CS       +  +   L  +    GI      + L+L  N I  I  + F  L  L +L
Sbjct: 51  SCSN--QFSKVVCTRRGLSEVP--QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVL 104

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
            +  N +  +  G F+    ++ +    N L  +  G F  L +L  L L +N + S  I
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES--I 162

Query: 306 DETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
               F  +  L+ L+L    +L  I    F+ L  L+ L+L   +I  +       L  L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGL 220

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
             + +S N    I    F+GL  L KL + N+ +  I+  AF   ++L EL+L+ N +  
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280

Query: 425 IP-SALSELPFLKTLDLGEN 443
           +P    + L +L  L L  N
Sbjct: 281 LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  198 bits (504), Expect = 5e-55
 Identities = 78/266 (29%), Positives = 117/266 (43%), Gaps = 20/266 (7%)

Query: 289 QLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           Q   +  +   LS     I   T         LNL  N +  I A TF+ L  L+ L L 
Sbjct: 55  QFSKVVCTRRGLSEVPQGIPSNT-------RYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
            NSI  IE  AF  L +L+T+ L +N +  I +  F  L  L +L L NN + +I S AF
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 407 KNCSALKELDLSS-NAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
               +L  LDL     +  I   A   L  LK L+LG   I  +   +   L  L +L +
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEM 225

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGV 523
             N+   +  G  + L SL+ L +  +++  IE   F+    L  + L  N L+ + + +
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 524 FTYLAQLLWLNLSEN------HLVWF 543
           FT L  L+ L+L  N       ++W 
Sbjct: 286 FTPLRYLVELHLHHNPWNCDCDILWL 311

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  167 bits (424), Expect = 2e-44
 Identities = 66/299 (22%), Positives = 116/299 (38%), Gaps = 59/299 (19%)

Query: 79  SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
           +   L E+P  + S  R L        NL  +  + +     +   L  L+VL +  ++I
Sbjct: 62  TRRGLSEVPQGIPSNTRYL--------NLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSI 111

Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-LRILD 197
           + I    F  LA++ TL L  N +  I +  F                    +  LR L 
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE------------------YLSKLRELW 153

Query: 198 LSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSSLRILNISSNHLVSLP 256
           L +N + ++  Y+   +   L  L L E  ++  I+  AF  L +L+ LN+   ++  +P
Sbjct: 154 LRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

Query: 257 EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL 316
                                         L  L  L++S NH     I   +F GL  L
Sbjct: 213 N--------------------------LTPLVGLEELEMSGNHFPE--IRPGSFHGLSSL 244

Query: 317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
             L + N++++ I+   F  L  L  L+L +N++  +  + F  L  L  ++L  N  +
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  155 bits (394), Expect = 1e-40
 Identities = 64/286 (22%), Positives = 120/286 (41%), Gaps = 47/286 (16%)

Query: 409 CSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           CS    ++  +   + E+P  +      + L+L EN I  I+  +F++L  L  L+L  N
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
           +I  +  G    L SL  L L  N +  I  G FE   +L  + L +N +  I +  F  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHN 585
           +  L+ L+L E                        +  ++      +GL ++K L+    
Sbjct: 170 VPSLMRLDLGEL---------------------KKLEYISE--GAFEGLFNLKYLNLGMC 206

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT----------- 634
            I ++  L+    +E L ++ N    ++P +F   S+L ++ +  + ++           
Sbjct: 207 NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266

Query: 635 ---KLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCSMDWLP 672
              +L+L    L  +P +     + L E +L  NP++CDC + WL 
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLA 312

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  151 bits (384), Expect = 3e-39
 Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 49/285 (17%)

Query: 21  SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEE 75
            V C            LS VP        I  +   L L       I   +F++++ LE 
Sbjct: 58  KVVCTRR--------GLSEVPQ------GIPSNTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 76  LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
           L++    + ++ V  F+GL +L  L +    L         +  G+ + L +L+ L + +
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-------VIPSGAFEYLSKLRELWLRN 156

Query: 136 SNIKSISDDVFCSLANIQTLNLSR-NSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-L 193
           + I+SI    F  + ++  L+L     +  I    F                   G+  L
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE------------------GLFNL 198

Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
           + L+L    ++ + + + +     L+ L +  N   +I P +F  LSSL+ L + ++ + 
Sbjct: 199 KYLNLGMCNIKDMPNLTPLV---GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 254 SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
            +    F     + E+    N+L  L   LF  L  L+ L L  N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  142 bits (359), Expect = 4e-36
 Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 28/219 (12%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             I   +F  + SL  L++ +  L  +P   F  L  L+ L +    ++        +  
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPS 164

Query: 120 GSLDGLRELQVLNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
            + + +  L  L++     ++ IS+  F  L N++ LNL   +I+D+  L   V      
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG----- 219

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
                         L  L++S N    +   S       L+ L + N+++S I  NAF  
Sbjct: 220 --------------LEELEMSGNHFPEIRPGS-FHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
           L+SL  LN++ N+L SLP  LF+  R + E++   N   
Sbjct: 265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (294), Expect = 1e-27
 Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
            + LC      A      CP  CSC        + V C+ + +S VP  IP +  ++ L 
Sbjct: 28  VWILCAAIAAAASAGPQNCPSVCSCS----NQFSKVVCTRRGLSEVPQGIPSNTRYLNLM 83

Query: 786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
            N                         I++I   TF  L  L+VL L  N I       F
Sbjct: 84  EN------------------------NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLG 905
           + L  L+ L L +N +  I +G F  L  L+ L L  N ++S  ++  N    L ++ LG
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 906 NN 907
             
Sbjct: 180 EL 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  113 bits (285), Expect = 2e-26
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 17/203 (8%)

Query: 767 QISTVPPRIPMDATH-VYLD---GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN 822
            I ++P          + LD       + I    F G  N+  L +    I+ +      
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLT 215

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
            L  L+ L +  N         F  L  L +L++  +++  I    F+ L SL  L L  
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE 942
           N L S           L +++L +NP++C C  +  L  W +             C    
Sbjct: 276 NNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD-ILWLAWW-LREYIPTNSTCCGRC---- 329

Query: 943 SSPPIR-----KEIDLNSTTCTE 960
            +P         E+D  S  C+ 
Sbjct: 330 HAPMHMRGRYLVEVDQASFQCSA 352

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  195 bits (497), Expect = 1e-55
 Identities = 77/278 (27%), Positives = 116/278 (41%), Gaps = 30/278 (10%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
           S   +  +S  L S+P G+ SS      +  + N L  L  G+F KL QL  L LSSN L
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSAT---RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI-EDNAFL 359
           S       +  G   L  L+LS N +  + +  F  L  L+ LD +++++  + E + FL
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKNCSALKELDLS 418
           SL NL  + +S          +FNGL  L  L ++ N+   N     F     L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 419 SNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
                                    Q+ ++   +F +L  L  L +  NN  +L +    
Sbjct: 184 QC-----------------------QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 479 ELPSLEVLNLSKNKIHQIEIGTFEK-NKRLAAIRLDSN 515
            L SL+VL+ S N I   +    +     LA + L  N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  182 bits (465), Expect = 2e-51
 Identities = 66/265 (24%), Positives = 114/265 (43%), Gaps = 15/265 (5%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
           CSG      +  +   L ++   +GI        L LE+N++  +    F  L+ L  L+
Sbjct: 7   CSG----TEIRCNSKGLTSVP--TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58

Query: 247 ISSNHL--VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           +SSN L               +  +    N ++ +S   F  LEQL  LD   ++L    
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMS 117

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYN 363
            + + F+ L  LI L++S+          F  L  L+ L +  N+       + F  L N
Sbjct: 118 -EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
           L  + LS+ ++  ++   FN L  L  L +S+N   ++D+  +K  ++L+ LD S N I+
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 424 EIP-SALSELP-FLKTLDLGENQIS 446
                 L   P  L  L+L +N  +
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  176 bits (448), Expect = 3e-49
 Identities = 66/267 (24%), Positives = 111/267 (41%), Gaps = 24/267 (8%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
           SK L  VP  +        L + S+ ++S+   VF  L  +  L+LS N +        +
Sbjct: 16  SKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI 231
               ++               L+ LDLS N + T+   S      +L++L  +++ + Q+
Sbjct: 74  DFGTTS---------------LKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQM 116

Query: 232 -APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE-LSRGLFHKLEQ 289
              + F++L +L  L+IS  H      G+F+    +  +    NS  E     +F +L  
Sbjct: 117 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 290 LLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
           L  LDLS   L    +  T F  L  L +LN+S+N    +D   +K L  LQ LD   N 
Sbjct: 177 LTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234

Query: 350 IGYIEDNAFLSL-YNLHTIYLSENRIH 375
           I   +         +L  + L++N   
Sbjct: 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  155 bits (393), Expect = 7e-42
 Identities = 69/383 (18%), Positives = 126/383 (32%), Gaps = 110/383 (28%)

Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
           +  ++  LT +            RL+L +N +  +    F  L  L  + LS N +    
Sbjct: 12  IRCNSKGLTSVPTGIPSSA---TRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK- 67

Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL 438
                                   S++    ++LK LDLS N ++ + S    L  L+ L
Sbjct: 68  ---------------------GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106

Query: 439 DLGENQISKI-ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
           D   + + ++ E   F +L+ L  L +   +     +G+   L SLEVL ++ N      
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------ 160

Query: 498 IGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD 556
                            +F  +    +FT L  L +L+LS+  L                
Sbjct: 161 -----------------SFQENFLPDIFTELRNLTFLDLSQCQLE--------------Q 189

Query: 557 IHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFINNNLIKSVKP 614
           +     +SL+         S++ L+ SHN    +         S++VL  + N I + K 
Sbjct: 190 LSPTAFNSLS---------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240

Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPII 674
                                        +  P +  L    L  N F C C        
Sbjct: 241 QEL--------------------------QHFPSS--LAFLNLTQNDFACTCEHQSF--- 269

Query: 675 NNNTSPSMERQYPKIMDLDNVVC 697
                  ++ Q   +++++ + C
Sbjct: 270 ----LQWIKDQRQLLVEVERMEC 288

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  131 bits (332), Expect = 1e-33
 Identities = 65/277 (23%), Positives = 110/277 (39%), Gaps = 40/277 (14%)

Query: 34  GSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEELKISNCKL--VEL 86
              L+ VPT       I   AT L L+     S+    F  +  L +L +S+  L     
Sbjct: 16  SKGLTSVPT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 87  PVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD-DV 145
                 G  +LK L ++  N        +  +  +  GL +L+ L+   SN+K +S+  V
Sbjct: 70  CSQSDFGTTSLKYLDLS-FN-------GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
           F SL N+  L++S    R      F                  G   L +L ++ N  + 
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFN-----------------GLSSLEVLKMAGNSFQE 164

Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRD 265
                  T+ R L  L L   ++ Q++P AF +LSSL++LN+S N+  SL    +     
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 266 ISEIYAQKNSLVELSRGLFHKL-EQLLVLDLSSNHLS 301
           +  +    N ++   +         L  L+L+ N  +
Sbjct: 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  120 bits (303), Expect = 6e-30
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 11/184 (5%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
            ++ +     +   N +F G  ++  L +  NS  E  L   F  L +L  L L    + 
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTN 896
                 F++L  L  L +  N    +    +  L SLQVL    N + +   +    +  
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFP 247

Query: 897 SMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNS- 955
           S L  + L  N F+C+C   Q    WI D    + +   + C    ++P  ++ + + S 
Sbjct: 248 SSLAFLNLTQNDFACTCE-HQSFLQWIKDQRQLLVEVERMEC----ATPSDKQGMPVLSL 302

Query: 956 -TTC 958
             TC
Sbjct: 303 NITC 306

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (265), Expect = 7e-25
 Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 37/196 (18%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC   +      + C+ + +++VP  IP  AT + L+ N  +++P+ VF     +
Sbjct: 1   CPSRCSCSGTE------IRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQL 54

Query: 804 LSLYVNNSQIEVI-------------------------LNQTFNGLSSLQVLHLENNLIT 838
             L ++++ +                            ++  F GL  L+ L  +++ + 
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 114

Query: 839 HFYGYE-FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF---RAFDLN 894
               +  F +L  L  L +         NG FN L SL+VL++ GN  +       F   
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 174

Query: 895 TNSMLRKVYLGNNPFS 910
            N  L  + L      
Sbjct: 175 RN--LTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 5e-07
 Identities = 23/149 (15%), Positives = 53/149 (35%), Gaps = 40/149 (26%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             ++  +F ++ SL+ L +S+     L    +  L +                       
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS----------------------- 224

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSL-ANIQTLNLSRNSIR---DIDTLGFAVRRA 175
                   LQVL+ S ++I +          +++  LNL++N      +  +    ++  
Sbjct: 225 --------LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276

Query: 176 SAESNSGEKIECSG-----GMDLRILDLS 199
                  E++EC+      GM +  L+++
Sbjct: 277 RQLLVEVERMECATPSDKQGMPVLSLNIT 305

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  199 bits (507), Expect = 1e-54
 Identities = 100/498 (20%), Positives = 192/498 (38%), Gaps = 39/498 (7%)

Query: 195 ILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVS 254
           ++D S N L  +     ++  ++   L++  N IS++  +  ++LS LRIL IS N +  
Sbjct: 4   LVDRSKNGLIHVP--KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 255 LPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLI 314
           L   +F   +++  +    N LV++S    H    L  LDLS N   +  I +  F  + 
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICK-EFGNMS 115

Query: 315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS---LYNLHTIYLSE 371
           +L  L LS   L +        L   + L +   + G  ED   L      +LH ++ + 
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN 175

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-----------ALKELDLSSN 420
              H I       +  L    +   L  N  S      +            L  ++ + N
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

Query: 421 AIVEIPSALSELP----FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
           + + I   +         +  + L      +  + S  +L+ L+  ++V +  G   S +
Sbjct: 236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNL 535
                ++ + N + +    + +    K      +   +N LTD       +L +L  L L
Sbjct: 296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355

Query: 536 SENHL----VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNRILEI 590
             N L       +      +L+ LDI  N +S             S+ +L+ S N + + 
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-KGDCSWTKSLLSLNMSSNILTDT 414

Query: 591 SELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNK 650
               +P  ++VL +++N IKS+ P        L  +++ +N +  +           +  
Sbjct: 415 IFRCLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSVPDGIFD-----RLT 468

Query: 651 TLPEFYLGGNPFDCDCSM 668
           +L + +L  NP+DC C  
Sbjct: 469 SLQKIWLHTNPWDCSCPR 486

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  186 bits (473), Expect = 2e-50
 Identities = 94/504 (18%), Positives = 174/504 (34%), Gaps = 77/504 (15%)

Query: 79  SNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI 138
           S   L+ +P D+         L I+   +        +L    +  L +L++L IS + I
Sbjct: 8   SKNGLIHVPKDLSQ---KTTILNISQNYIS-------ELWTSDILSLSKLRILIISHNRI 57

Query: 139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDL 198
           + +   VF     ++ L+LS N +  I                     C   ++L+ LDL
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVKIS--------------------CHPTVNLKHLDL 97

Query: 199 SHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS------------------ 240
           S N    L          +L+ L L    + + +      L+                  
Sbjct: 98  SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

Query: 241 -SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH-------------- 285
             L+  N  S H+V      F    D+S        L  +   L                
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 286 KLEQLLVLDLSSNHLSSNHIDE-TTFIGLIRLIILNLSNNELTRIDAKTFKDLVF----- 339
              +L  L L++   + N        +    +   ++SN +L         D        
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA 277

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           L    + ++  G+ +   +    N++    + +    +     + +     L  SNNLL 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIP---SALSELPFLKTLDLGENQISKIEN-GSFKN 455
           +   +   + + L+ L L  N + E+       +++  L+ LD+ +N +S  E  G    
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
            + L  L +  N + +     L   P ++VL+L  NKI  I      K + L  + + SN
Sbjct: 398 TKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASN 454

Query: 516 FLTDI-NGVFTYLAQLLWLNLSEN 538
            L  + +G+F  L  L  + L  N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  179 bits (455), Expect = 5e-48
 Identities = 87/486 (17%), Positives = 170/486 (34%), Gaps = 48/486 (9%)

Query: 36  NLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
            L  VP DL    T LNI  +      S + T    ++  L  L IS+ ++  L + VF 
Sbjct: 11  GLIHVPKDLSQKTTILNISQNYI----SELWTSDILSLSKLRILIISHNRIQYLDISVFK 66

Query: 93  GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD-VFCSLAN 151
             + L+ L ++   L      K+     S      L+ L++S +   ++     F +++ 
Sbjct: 67  FNQELEYLDLSHNKLV-----KI-----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 152 IQTLNLSRNSIRDIDTLGFAVRRASAE--SNSGEKIECSGGMDLRILDLSHNKLRTLGD- 208
           ++ L LS   +     L  A    S           E      L+  +     +    + 
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176

Query: 209 -----------------YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
                             S I             + ++++  N  ++  +L  +  + N 
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236

Query: 252 LVSLPEGLFSS---CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET 308
            + + + ++ +      IS +  Q              L+ L +  + S+          
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQ--SY 294

Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIY 368
            +     + I N + +    +       +     LD  NN +          L  L T+ 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354

Query: 369 LSENRIHHI--TAHLFNGLYVLSKLTLSNNLLVNIDSK-AFKNCSALKELDLSSNAIVEI 425
           L  N++  +   A +   +  L +L +S N +   + K       +L  L++SSN + + 
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
                  P +K LDL  N+I  I     K L+ L +L +  N + ++  G+   L SL+ 
Sbjct: 415 IFR-CLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 486 LNLSKN 491
           + L  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  176 bits (448), Expect = 5e-47
 Identities = 93/535 (17%), Positives = 177/535 (33%), Gaps = 62/535 (11%)

Query: 410 SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
                L++S N I E+  S +  L  L+ L +  N+I  ++   FK  Q+L  L L  N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQI-EIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
           +  +S        +L+ L+LS N    +     F    +L  + L +  L         +
Sbjct: 81  LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE--KSSVLPI 135

Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
           A L    +       +     P  L+  +    +I    N    K+   I ++       
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTN----KEFHFILDVSVKTVAN 191

Query: 588 LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVP 647
           LE+S +             +++  ++ +       L  ++   N   ++         + 
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL-------QLV 244

Query: 648 QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTH 707
            + T+  F +                   +       +   I  + + V     S     
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSL------KALSIHQVVSDVFGFPQSYIYEI 298

Query: 708 LPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767
                    +                        M CP   S           +D S   
Sbjct: 299 FSNMNI---KNFTVSGTRMVH-------------MLCPSKIS-------PFLHLDFSNNL 335

Query: 768 ISTVPPRIPM---DATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEVILNQ-TF 821
           ++           +   + L  N  K +     +    K++  L ++ + +     +   
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNL-EKLSELYLQENRIEYIANGTFNALISLQVLQL 880
           +   SL  L++ +N++T      F  L  ++  L L  N+I+ I       L +LQ L +
Sbjct: 396 SWTKSLLSLNMSSNILTDT---IFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNV 451

Query: 881 DGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
             N+LKS     FD  T+  L+K++L  NP+ CSC  +  L  W+  NS K +  
Sbjct: 452 ASNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS 504

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  138 bits (349), Expect = 3e-34
 Identities = 66/409 (16%), Positives = 136/409 (33%), Gaps = 35/409 (8%)

Query: 35  SNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGL 94
             +S  PT  +  L++  +     D+    K F N+  L+ L +S   L +  V   + L
Sbjct: 82  VKISCHPTVNLKHLDLSFN---AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138

Query: 95  RNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR--ELQVLNISSSNIKSISDDVFCSLANI 152
              K L +        +       P  L       L ++  ++     I D    ++AN+
Sbjct: 139 NISKVLLVLGETYGEKED------PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 153 QTLNLSRNSIRDI---------------DTLGFAVRRASAESNSGEKI-ECSGGMDLRIL 196
           +  N+      +                      +       NS  +I +      +   
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 197 DLSHNKLRTLGDYSGI----TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
            +S+ KL+   D+       T  + L    + ++         +   S++ I N + +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
             +     S       +    N L +        L +L  L L  N L            
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 313 LIRLIILNLSNNELTRIDAK-TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
           +  L  L++S N ++  + K        L  L++ +N +             +  + L  
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHS 430

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           N+I  I   +   L  L +L +++N L ++    F   ++L+++ L +N
Sbjct: 431 NKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  123 bits (310), Expect = 2e-29
 Identities = 77/388 (19%), Positives = 139/388 (35%), Gaps = 37/388 (9%)

Query: 291 LVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
            ++D S N L      + + T        ILN+S N ++ +       L  L+ L + +N
Sbjct: 3   FLVDRSKNGLIHVPKDLSQKT-------TILNISQNYISELWTSDILSLSKLRILIISHN 55

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFK 407
            I Y++ + F     L  + LS N++  I+    +    L  L LS N    +   K F 
Sbjct: 56  RIQYLDISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFG 112

Query: 408 NCSALKELDLSSNAIVEIP-SALSELPFLK-TLDLGENQISKIENGSFKNL--QQLTDLR 463
           N S LK L LS+  + +     ++ L   K  L LGE    K +    ++   + L  + 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172

Query: 464 LVDNNIGNLSSGMLYELPSLEVLNLSKNKIH-----------QIEIGTFEKNKRLAAIRL 512
             +     +    +  + +LE+ N+                 +++      N  L  I  
Sbjct: 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232

Query: 513 DSNFLTDINGVFTYLAQLLWLNLSENHL----VWFDYAMVPGNLKWLDIHGNYISSLNNY 568
             N    I     +   + + ++S   L     + D+     +LK L IH          
Sbjct: 233 TWNSFIRIL-QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 569 YE-IKDGLS---IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLA 624
              I +  S   IKN   S  R++ +   S  +    L  +NNL+           + L 
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 625 RVDIYANDITKLDLTALRLKPVPQNKTL 652
            + +  N + +L   A     +   + L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQL 379

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.2 bits (234), Expect = 7e-20
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 6/169 (3%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           +  +VD S+  +  VP  +    T + +  N    +     +    +  L +++++I+ +
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA-NGTFNALISL 875
               F     L+ L L +N +             L  L L  N  + +     F  +  L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 876 QVLQLDGNRLKS--FRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
           + L L    L+            S +  V             LQ+  T 
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  191 bits (487), Expect = 7e-54
 Identities = 66/297 (22%), Positives = 122/297 (41%), Gaps = 15/297 (5%)

Query: 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
            + +  A ++     I   SS  L S+P GL  + +    +    N +  +S     +  
Sbjct: 20  EESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVK---SLDLSNNRITYISNSDLQRCV 76

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
            L  L L+SN +++  I+E +F  L  L  L+LS N L+ + +  FK L  L  L+L  N
Sbjct: 77  NLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134

Query: 349 SIGYIEDN-AFLSLYNLHTIYLSEN-RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
               + +   F  L  L  + +        I    F GL  L +L +  + L + + K+ 
Sbjct: 135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194

Query: 407 KNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGEN-----QISKIENGSFKNLQQLT 460
           K+   +  L L     + +    +     ++ L+L +        S++  G   +L +  
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 461 DLRLVDNNIGNLSS--GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
             R V     +L     +L ++  L  L  S+N++  +  G F++   L  I L +N
Sbjct: 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  189 bits (481), Expect = 6e-53
 Identities = 59/286 (20%), Positives = 118/286 (41%), Gaps = 35/286 (12%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
            ++ LDLS+N++  + +   + +   LQ L L +N I+ I  ++F +L SL  L++S N+
Sbjct: 53  AVKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L +L                            F  L  L  L+L  N   +   + + F 
Sbjct: 112 LSNLS------------------------SSWFKPLSSLTFLNLLGNPYKTLG-ETSLFS 146

Query: 312 GLIRLIILNLSNNE-LTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
            L +L IL + N +  T+I  K F  L FL+ L++  + +   E  +  S+ N+  + L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVN--------IDSKAFKNCSALKELDLSSNAI 422
             +   +     +    +  L L +  L           ++ +       + + ++  ++
Sbjct: 207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266

Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
            ++   L+++  L  L+   NQ+  + +G F  L  L  + L  N 
Sbjct: 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  159 bits (404), Expect = 7e-43
 Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 62/311 (19%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
           +++ L +SN ++  +         NL+ L + +  +         +   S   L  L+ L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-------TIEEDSFSSLGSLEHL 105

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
           ++S + + ++S   F  L+++  LNL  N  + +                          
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL--------------------- 144

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNL----HLENNEISQIAPNAFVALSSLRILNI 247
                                  F  L  L        +  ++I    F  L+ L  L I
Sbjct: 145 -----------------------FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
            ++ L S       S +++S +       + L          +  L+L    L + H  E
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 308 ------TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
                  + I       + +++  L ++  K    +  L  L+   N +  + D  F  L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300

Query: 362 YNLHTIYLSEN 372
            +L  I+L  N
Sbjct: 301 TSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  135 bits (341), Expect = 2e-34
 Identities = 64/305 (20%), Positives = 114/305 (37%), Gaps = 49/305 (16%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           C        SS ++  IPS L+    +K+LDL  N+I+ I N   +    L  L L  N 
Sbjct: 30  CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFTY 526
           I  +       L SLE L+LS N +  +    F+    L  + L  N    +    +F++
Sbjct: 88  INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 527 LAQLLWLNLSENHLV------WFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKN 579
           L +L  L +             F        L+ L+I  + + S     +    + ++ +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAG---LTFLEELEIDASDLQSYEP--KSLKSIQNVSH 202

Query: 580 LDASHNRILEISELSIPN--SVEVLFINNNLIK--------SVKPHTFFDKSNLARVDIY 629
           L     + + + E+ +    SVE L + +  +         + + ++   K     V I 
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 630 ANDITKL-----DLTALR--------LKPVPQN-----KTLPEFYLGGNPFDCDCSM--- 668
              + ++      ++ L         LK VP        +L + +L  NP+DC C     
Sbjct: 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322

Query: 669 --DWL 671
              WL
Sbjct: 323 LSRWL 327

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  117 bits (294), Expect = 2e-28
 Identities = 47/243 (19%), Positives = 85/243 (34%), Gaps = 44/243 (18%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTI----------------- 102
           ++I   SF ++ SLE L +S   L  L    F  L +L  L +                 
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 103 -NTRNLQWDKSKKLDLVP-GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
              + L+         +      GL  L+ L I +S+++S       S+ N+  L L   
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208

Query: 161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL-------GDYSGIT 213
               +  +   V  +                 +  L+L    L T        G+ + + 
Sbjct: 209 QHILLLEIFVDVTSS-----------------VECLELRDTDLDTFHFSELSTGETNSLI 251

Query: 214 KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
           K    +N+ + +  + Q+       +S L  L  S N L S+P+G+F     + +I+   
Sbjct: 252 KKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310

Query: 274 NSL 276
           N  
Sbjct: 311 NPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (259), Expect = 9e-24
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 12/195 (6%)

Query: 749 SCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLS 805
           S F        +   +    + +  +     T    + +D +  ++         +N+  
Sbjct: 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSH 202

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYE--------FDNLEKLSELYLQ 857
           L ++  Q  ++L    +  SS++ L L +  +  F+  E                 + + 
Sbjct: 203 LILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262

Query: 858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQ 917
           +  +  +     N +  L  L+   N+LKS      +  + L+K++L  NP+ CSC  + 
Sbjct: 263 DESLFQVMKL-LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321

Query: 918 ELQTWIIDNSNKVKD 932
            L  W+  NS K + 
Sbjct: 322 YLSRWLNKNSQKEQG 336

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 40/186 (21%)

Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
              +    E  +    ++C +N  C             S   ++++P  +      + L 
Sbjct: 12  GVIISLSKEESSNQASLSCDRNGIC-----------KGSSGSLNSIPSGLTEAVKSLDLS 60

Query: 786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEF 845
            N    I N                               +LQ L L +N I       F
Sbjct: 61  NNRITYISNSDL------------------------QRCVNLQALVLTSNGINTIEEDSF 96

Query: 846 DNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKV 902
            +L  L  L L  N +  +++  F  L SL  L L GN  K+      F   T   L+ +
Sbjct: 97  SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK--LQIL 154

Query: 903 YLGNNP 908
            +GN  
Sbjct: 155 RVGNMD 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  194 bits (495), Expect = 1e-53
 Identities = 87/483 (18%), Positives = 161/483 (33%), Gaps = 63/483 (13%)

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
                          +IS      LA + +L+   +SI D+  +                
Sbjct: 20  FASEVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTGIEKLTG----------- 65

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
                   L  L  + N + TL     +++   L  L  ++N+++ +       L+ L  
Sbjct: 66  --------LTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLD---VTPLTKLTY 110

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           LN  +N L  L     S    ++ +   +N+L E+         QL  LD   N      
Sbjct: 111 LNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKK---- 160

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
           I +       +L  L+ S N++T +D         L RL+   N+I  ++         L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQL 214

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
             +  S N++  I       L  L+    S N L  +D         L  L      ++E
Sbjct: 215 TFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK---LTTLHCIQTDLLE 268

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
           I   L+    L           KI+     +  QL  L      I  L    L + P L 
Sbjct: 269 ID--LTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLV 321

Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFD 544
            L L+  ++ ++++     N +L ++   +  + D +     +  L     +E   +   
Sbjct: 322 YLYLNNTELTELDVS---HNTKLKSLSCVNAHIQDFS-SVGKIPALNNNFEAEGQTITMP 377

Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFI 604
              +  N   + +  + +    N   I+ G      D + N I   +  +   +V   F 
Sbjct: 378 KETLTNNSLTIAVSPDLLDQFGNPMNIEPG-DGGVYDQATNTITWENLSTDNPAVTYTFT 436

Query: 605 NNN 607
           + N
Sbjct: 437 SEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  173 bits (440), Expect = 2e-46
 Identities = 76/425 (17%), Positives = 146/425 (34%), Gaps = 63/425 (14%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
                 +  +++   D     +   L +L   N+ I+ +       L+ L  L  +SN++
Sbjct: 20  FASEVAAAFEMQAT-DTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNI 76

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
            +L     S   +++ +    N L  L       L +L  L+  +N L+   +       
Sbjct: 77  TTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVS-----Q 125

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
              L  LN + N LT ID      L     LD   N    I          L T+  S N
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQL---TELDCHLNKK--ITKLDVTPQTQLTTLDCSFN 180

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSEL 432
           +I  +     +   +L++L    N +  +D         L  LD SSN + EI   ++ L
Sbjct: 181 KITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID--VTPL 232

Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
             L   D   N ++++       L +LT L  +  ++  +    L     L        +
Sbjct: 233 TQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLLEID---LTHNTQLIYFQAEGCR 286

Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNL 552
             +I+      N +L  +   +  +T+++   +   +L++L L+   L   D        
Sbjct: 287 --KIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD-------- 334

Query: 553 KWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSV 612
                    +S             +K+L   +  I + S +    ++   F       ++
Sbjct: 335 ---------VSHNTK---------LKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITM 376

Query: 613 KPHTF 617
              T 
Sbjct: 377 PKETL 381

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  144 bits (364), Expect = 1e-36
 Identities = 74/345 (21%), Positives = 130/345 (37%), Gaps = 39/345 (11%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
            +           I     + L  L  LD  N+SI  +       L  L  +  + N I 
Sbjct: 23  EVAAAFEMQATDTIS---EEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFL 435
            +     +    L+ L   +N L N+D       + L  L+  +N + ++   +S+ P L
Sbjct: 78  TLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLL 129

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
             L+   N +++I+     +  QLT+L    N    ++   +     L  L+ S NKI +
Sbjct: 130 TYLNCARNTLTEID---VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITE 184

Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL 555
           +++    +NK L  +  D+N +T ++       QL +L+ S N L   D   +   L + 
Sbjct: 185 LDVS---QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYF 238

Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPH 615
           D   N ++ L+    +     +  L      +LEI        +         IK +   
Sbjct: 239 DCSVNPLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL--- 291

Query: 616 TFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGN 660
                + L  +D  A  IT+LDL+        QN  L   YL   
Sbjct: 292 DVTHNTQLYLLDCQAAGITELDLS--------QNPKLVYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  135 bits (341), Expect = 1e-33
 Identities = 79/433 (18%), Positives = 137/433 (31%), Gaps = 88/433 (20%)

Query: 61  SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
           +ITT       +L  L   + KL  L                                  
Sbjct: 75  NITTLDLSQNTNLTYLACDSNKLTNLD--------------------------------- 101

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
            +  L +L  LN  ++ +  +          +  LN +RN++ +ID              
Sbjct: 102 -VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNT--------- 148

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
                       L  LD   NK  T  D +  T+   L  L    N+I+++         
Sbjct: 149 -----------QLTELDCHLNKKITKLDVTPQTQ---LTTLDCSFNKITEL---DVSQNK 191

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
            L  LN  +N++  L     +    ++ +    N L E+       L QL   D S N L
Sbjct: 192 LLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPL 245

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
           +   +D +T   L     L+    +L  ID      L++ Q    R      I++     
Sbjct: 246 TE--LDVSTLSKLTT---LHCIQTDLLEIDLTHNTQLIYFQAEGCRK-----IKELDVTH 295

Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
              L+ +      I  +     +    L  L L+N  L  +D     + + LK L   + 
Sbjct: 296 NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNA 349

Query: 421 AIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
            I +  S + ++P L      E Q   +   +  N      +    + +    + M  E 
Sbjct: 350 HIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSP--DLLDQFGNPMNIEP 406

Query: 481 PSLEVLNLSKNKI 493
               V + + N I
Sbjct: 407 GDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 84.4 bits (209), Expect = 6e-17
 Identities = 36/299 (12%), Positives = 82/299 (27%), Gaps = 51/299 (17%)

Query: 62  ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
           IT         L  L      + +L     +    L  L  ++  L      ++D     
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKL-----TEID----- 228

Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
           +  L +L   + S + +  +      +L+ + TL+  +  + +ID               
Sbjct: 229 VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT---------- 275

Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
                      L        +     D +  T+   L  L  +   I+++          
Sbjct: 276 ----------QLIYFQAEGCRKIKELDVTHNTQ---LYLLDCQAAGITEL---DLSQNPK 319

Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
           L  L +++  L  L     S    +  +      + + S     K+  L     +     
Sbjct: 320 LVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS--SVGKIPALNNNFEAEGQTI 374

Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
           +              + + +S + L +       +       D   N+I +   +    
Sbjct: 375 TM----PKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 48/263 (18%)

Query: 62  ITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGS 121
           +T      +  L     S   L EL     S L  L  L     +L              
Sbjct: 224 LTEIDVTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLL------------E 268

Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
           +D     Q++   +   + I +        +  L+     I ++D               
Sbjct: 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDL-------------- 314

Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
                 S    L  L L++ +L  L D S  TK   L++L   N  I   +      + +
Sbjct: 315 ------SQNPKLVYLYLNNTELTEL-DVSHNTK---LKSLSCVNAHIQDFSSVGK--IPA 362

Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
           L     +    +++P+   ++    S   A    L++           +   D      +
Sbjct: 363 LNNNFEAEGQTITMPKETLTN---NSLTIAVSPDLLDQF----GNPMNIEPGDGGVYDQA 415

Query: 302 SNHIDETTFIGLIRLIILNLSNN 324
           +N I           +    ++ 
Sbjct: 416 TNTITWENLSTDNPAVTYTFTSE 438

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 26/156 (16%), Positives = 43/156 (27%), Gaps = 16/156 (10%)

Query: 754 QNWNTNVVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQ 812
            N     +DC   +  T     P    T +    N    +        K +  L  + + 
Sbjct: 146 HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNN 202

Query: 813 IEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNAL 872
           I  +     N    L  L   +N +T     +   L +L+      N +  +     + L
Sbjct: 203 ITKL---DLNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTEL---DVSTL 253

Query: 873 ISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNP 908
             L  L      L      DL  N+ L         
Sbjct: 254 SKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 5e-08
 Identities = 23/169 (13%), Positives = 47/169 (27%), Gaps = 16/169 (9%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
           DCS  +++ +        T+     N    +          + +L+   + +  I     
Sbjct: 218 DCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEI---DL 271

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
              + L     E          +  +  +L  L  Q   I  +     +    L  L L+
Sbjct: 272 THNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLN 326

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSC--SCATLQELQTWIIDNSN 928
              L      D++ N+ L+ +   N       S   +  L         
Sbjct: 327 NTELTE---LDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ 372

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 15/150 (10%)

Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
           DC    I+ +     +   T +    N   T+         N+  L  +++++  +    
Sbjct: 48  DCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL---D 101

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
              L+ L  L+ + N +T     +      L+ L    N +  I     +    L  L  
Sbjct: 102 VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDC 155

Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
             N+  +       T   L  +    N  +
Sbjct: 156 HLNKKITKLDVTPQTQ--LTTLDCSFNKIT 183

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
            N  S      +++     +   L++L  L   N+ IT   G   + L  L++L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
           I  +     +   +L  L  D N+L +    D+   + L  +    N  +
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT 119

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  189 bits (481), Expect = 2e-53
 Identities = 60/313 (19%), Positives = 113/313 (36%), Gaps = 14/313 (4%)

Query: 310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
                R  I  ++++ L +  A   +    ++ LDL  N +  I          L  + L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
           S N ++         L  L  L L+NN +  +         +++ L  ++N I  +  + 
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCSR 118

Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-LPSLEVLNL 488
                 K + L  N+I+ + +       ++  L L  N I  ++   L     +LE LNL
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 489 SKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMV 548
             N I+ ++        +L  + L SN L  +   F   A + W++L  N LV  + A+ 
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 549 P-GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
              NL+  D+ GN                ++ +     + L            +      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 608 LIKSVKPHTFFDK 620
             + + P  F D+
Sbjct: 295 CCEDL-PAPFADR 306

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  182 bits (465), Expect = 3e-51
 Identities = 63/302 (20%), Positives = 118/302 (39%), Gaps = 18/302 (5%)

Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
               +  +I  ++ + L      L  S  ++ E+    N L ++S        +L +L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED 355
           SSN L            L  L  L+L+NN +  +          ++ L   NN+I  +  
Sbjct: 66  SSNVLYETL----DLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC 116

Query: 356 NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKE 414
           +      N+   YL+ N+I  +          +  L L  N +  ++      +   L+ 
Sbjct: 117 SRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS 474
           L+L  N I ++   +     LKTLDL  N+++ +    F++   +T + L +N +  +  
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEK 231

Query: 475 GMLYELPSLEVLNLSKNKIHQIEI-GTFEKNKRLAAIRLDSN-FLTDINGVFTYLAQLLW 532
             L    +LE  +L  N  H   +   F KN+R+  +   +   LT  N     +  L  
Sbjct: 232 A-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 533 LN 534
             
Sbjct: 291 YG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  177 bits (452), Expect = 2e-49
 Identities = 62/375 (16%), Positives = 130/375 (34%), Gaps = 70/375 (18%)

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
               ++  ++ S++K     +  S  N++ L+LS N +  I                   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL-------------- 54

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
              +    L +L+LS N L    D   +     L+ L L NN + ++         S+  
Sbjct: 55  ---APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIET 103

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           L+ ++N++  +                                     + L++N ++   
Sbjct: 104 LHAANNNISRVSCSRGQG---------------------------KKNIYLANNKITM-- 134

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAFLSLYN 363
           + +       R+  L+L  NE+  ++          L+ L+L+ N I  ++     +   
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA--K 192

Query: 364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
           L T+ LS N++  +    F     ++ ++L NN LV I  KA +    L+  DL  N   
Sbjct: 193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFH 250

Query: 424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS- 482
                      L+       ++  +   + K L    +       +G+  +    +LP+ 
Sbjct: 251 CGT--------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

Query: 483 --LEVLNLSKNKIHQ 495
               ++ L  +  H 
Sbjct: 303 FADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  177 bits (452), Expect = 2e-49
 Identities = 62/384 (16%), Positives = 132/384 (34%), Gaps = 77/384 (20%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            QN    +  K+++  L +    +     N+K L ++   L         +    L    
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------QISAADLAPFT 58

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIE 186
           +L++LN+SS+ +    D    SL+ ++TL+L+ N ++++                     
Sbjct: 59  KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS---------------- 100

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
                 +  L  ++N +  +      ++ +  +N++L NN+I+ +        S ++ L+
Sbjct: 101 ------IETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           +  N + ++                                + L  L+L  N +    + 
Sbjct: 151 LKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNFIYD--VK 185

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
                   +L  L+LS+N+L  +    F+    +  + LRNN +  IE  A     NL  
Sbjct: 186 GQVV--FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEH 241

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
             L  N  H  T         L      N  +  +  +  K  +   E + +   +    
Sbjct: 242 FDLRGNGFHCGT---------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 427 S----ALSELPFLKTLDLGENQIS 446
           +     L      + + LG +   
Sbjct: 293 AYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  150 bits (382), Expect = 3e-40
 Identities = 53/323 (16%), Positives = 127/323 (39%), Gaps = 42/323 (13%)

Query: 381 LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSELPFLKTLD 439
           +           ++++ L    +   ++   +KELDLS N + +I  + L+    L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 440 LGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG 499
           L  N + +      ++L  L  L L +N +  L        PS+E L+ + N I ++   
Sbjct: 65  LSSNVLYETL--DLESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS 117

Query: 500 TFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIH 558
             +  K +    L +N +T + +      +++ +L+L  N +   ++A +  +   L   
Sbjct: 118 RGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 559 GNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFF 618
                              ++L+  +N I ++    +   ++ L +++N +  +    F 
Sbjct: 172 -------------------EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFM-GPEFQ 211

Query: 619 DKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNT 678
             + +  + +  N +  ++      K +  ++ L  F L GN F C    D+        
Sbjct: 212 SAAGVTWISLRNNKLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 679 SPSMERQYPKIMDLDNVVCKMTY 701
           + + ++   K+   +   C +  
Sbjct: 266 TVA-KQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 41/258 (15%), Positives = 78/258 (30%), Gaps = 46/258 (17%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLK----RLTINTRNLQWDKSKKLDLVPG 120
           +      S+E L  +N  +  +      G +N+     ++T               L   
Sbjct: 93  QELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT--------------MLRDL 138

Query: 121 SLDGLRELQVLNISSSNIKSIS-DDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                  +Q L++  + I +++  ++  S   ++ LNL  N I D+       +      
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK------ 192

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                        L+ LDLS NKL  +G          +  + L NN++  I   A    
Sbjct: 193 -------------LKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLI-EKALRFS 236

Query: 240 SSLRILNISSNHLVSLP-EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
            +L   ++  N          FS  + +  +  Q    +         +  L        
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL----GHYG 292

Query: 299 HLSSNHIDETTFIGLIRL 316
                 +       LI L
Sbjct: 293 AYCCEDLPAPFADRLIAL 310

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 9e-19
 Identities = 34/242 (14%), Positives = 77/242 (31%), Gaps = 37/242 (15%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           S ++    Q     + + ++N K+  L          ++ L     +L+ ++   ++   
Sbjct: 112 SRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYL-----DLKLNEIDTVNF-A 162

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
                   L+ LN+  + I  +   V    A ++TL+LS N +  +              
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP------------ 208

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                 E      +  + L +NKL  +     +   + L++  L  N         F   
Sbjct: 209 ------EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFF-S 259

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
            + R+  ++   +  L       C   +  +       +L      +L     + L  +H
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL-----IALGHHH 314

Query: 300 LS 301
             
Sbjct: 315 HH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 21/128 (16%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
               +  ++ K     +     N+  L ++ + +  I        + L++L+L +N++  
Sbjct: 13  KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
               + ++L  L  L L  N ++ +  G      S++ L    N +        +     
Sbjct: 73  T--LDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISR---VSCSRGQGK 122

Query: 900 RKVYLGNN 907
           + +YL NN
Sbjct: 123 KNIYLANN 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
           +++     +  ++  + ++ +         +   + EL L  N +  I+         L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQEL 919
           +L L  N L      +  +   LR + L NN         +++ L
Sbjct: 62  LLNLSSNVLYETLDLESLST--LRTLDLNNNYVQELLVGPSIETL 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 71.6 bits (176), Expect = 3e-13
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
             V +S ++  L        +++ L L  N ++     +     KL  L L  N +    
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL 74

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-SCATLQELQT 921
           +    +L +L+ L L+ N ++      L     +  ++  NN  S  SC+  Q  + 
Sbjct: 75  D--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSRGQGKKN 124

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 8e-13
 Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 12/143 (8%)

Query: 767 QISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
            +        +     + L+ N  + +         ++ +L+  N+ I  +   + +   
Sbjct: 69  VLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRV---SCSRGQ 120

Query: 826 SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF-NALISLQVLQLDGNR 884
             + ++L NN IT     +     ++  L L+ N I+ +       +  +L+ L L  N 
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 885 LKSFRAFDLNTNSMLRKVYLGNN 907
           +   +   +     L+ + L +N
Sbjct: 181 IYDVKGQVVFAK--LKTLDLSSN 201

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 5/128 (3%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
            H+ L  N    +   V      + +L ++++++  +    F   + +  + L NN +  
Sbjct: 172 EHLNLQYNFIYDVKGQVVF--AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL 228

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSML 899
                    + L    L+ N         F +  + +V  +    +K     +    ++ 
Sbjct: 229 IEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 900 RKVYLGNN 907
              + G  
Sbjct: 287 TLGHYGAY 294

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  180 bits (458), Expect = 1e-50
 Identities = 74/259 (28%), Positives = 111/259 (42%), Gaps = 33/259 (12%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
           C     +         L+ +    GI      Q + L  N IS +   +F A  +L IL 
Sbjct: 8   CYNEPKVTT-SCPQQGLQAVP--VGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHI 305
           + SN L  +    F+                         L  L  LDLS N  L S  +
Sbjct: 63  LHSNVLARIDAAAFTG------------------------LALLEQLDLSDNAQLRS--V 96

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
           D  TF GL RL  L+L    L  +    F+ L  LQ L L++N++  + D+ F  L NL 
Sbjct: 97  DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
            ++L  NRI  +    F GL+ L +L L  N + ++   AF++   L  L L +N +  +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 426 PS-ALSELPFLKTLDLGEN 443
           P+ AL+ L  L+ L L +N
Sbjct: 217 PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  156 bits (397), Expect = 1e-42
 Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 15/208 (7%)

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA- 421
               I+L  NRI H+ A  F     L+ L L +N+L  ID+ AF   + L++LDLS NA 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 422 IVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL 480
           +  +       L  L TL L    + ++  G F+ L  L  L L DN +  L      +L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 481 PSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENH 539
            +L  L L  N+I  +    F     L  + L  N +  +    F  L +L+ L L  N+
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 540 LVWFDYAMVPG-------NLKWLDIHGN 560
           L     + +P         L++L ++ N
Sbjct: 213 L-----SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  150 bits (381), Expect = 2e-40
 Identities = 67/268 (25%), Positives = 108/268 (40%), Gaps = 34/268 (12%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
                        +  +P  +      + + L  N+IS +   SF+  + LT L L  N 
Sbjct: 10  NEPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67

Query: 469 IGNLSSGMLYELPSLEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
           +  + +     L  LE L+LS N ++  ++  TF    RL  + LD   L ++  G+F  
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

Query: 527 LAQLLWLNLSENHLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASH 584
           LA L +L L +N L            NL  L +HGN ISS+          + + L    
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-------AFRGL---- 176

Query: 585 NRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLK 644
                       +S++ L ++ N +  V PH F D   L  + ++AN+++ L   AL   
Sbjct: 177 ------------HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-- 222

Query: 645 PVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
                + L    L  NP+ CDC    L 
Sbjct: 223 ---PLRALQYLRLNDNPWVCDCRARPLW 247

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  136 bits (344), Expect = 1e-35
 Identities = 53/265 (20%), Positives = 101/265 (38%), Gaps = 43/265 (16%)

Query: 18  NRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYS 72
            +++ +C            L  VP        I   +  + L     S +   SF+   +
Sbjct: 12  PKVTTSCP--------QQGLQAVPV------GIPAASQRIFLHGNRISHVPAASFRACRN 57

Query: 73  LEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLN 132
           L  L + +  L  +    F+GL  L++L ++  N Q        + P +  GL  L  L+
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLS-DNAQLR-----SVDPATFHGLGRLHTLH 111

Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
           +    ++ +   +F  LA +Q L L  N+++ +    F                     +
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-----------------RDLGN 154

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
           L  L L  N++ ++ + +       L  L L  N ++ + P+AF  L  L  L + +N+L
Sbjct: 155 LTHLFLHGNRISSVPERA-FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLV 277
            +LP    +  R +  +    N  V
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  128 bits (325), Expect = 5e-33
 Identities = 63/283 (22%), Positives = 97/283 (34%), Gaps = 84/283 (29%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVY-------------------- 783
           CP  C C+++         C +Q +  VP  IP  +  ++                    
Sbjct: 2   CPGACVCYNE---PKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58

Query: 784 ----LDGNTFKTIPNHVFIGRKNMLSLYV-NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
               L  N    I    F G   +  L + +N+Q+  +   TF+GL  L  LHL+   + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS-----FR---- 889
                 F  L  L  LYLQ+N ++ + + TF  L +L  L L GNR+ S     FR    
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 890 -----------------AF---------DLNTNSM-------------LRKVYLGNNPFS 910
                            AF          L  N++             L+ + L +NP+ 
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 911 CSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL 953
           C C   + L  W+           ++ C    S P      DL
Sbjct: 239 CDCR-ARPLWAWLQKFRGSSS---EVPC----SLPQRLAGRDL 273

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  181 bits (462), Expect = 2e-49
 Identities = 91/541 (16%), Positives = 173/541 (31%), Gaps = 103/541 (19%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
            L+E    +  L E+PV+  + +++                      P      RE+ V 
Sbjct: 12  FLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEW-------ERNAPPGNGEQREMAVS 63

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSGEKIECSGG 190
            +             C       L L+   +  + +                        
Sbjct: 64  RLRD-----------CLDRQAHELELNNLGLSSLPELPP--------------------- 91

Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
             L  L  S N L  L +       + L   +     +S +          L  L +S+N
Sbjct: 92  -HLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNN 141

Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
            L  LPE    +   +  I    NSL +L          L  +   +N L    + E   
Sbjct: 142 QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE--LPE--L 191

Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
             L  L  +   NN L ++        + L+ +   NN +  + +    +L  L TIY  
Sbjct: 192 QNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYAD 245

Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430
            N +  +     +    L  L + +N L ++         +L  LD+S N    +     
Sbjct: 246 NNLLKTLPDLPPS----LEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSELPP 297

Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
               L  L+   N+I  +          L +L + +N +  L +      P LE L  S 
Sbjct: 298 N---LYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIELPA----LPPRLERLIASF 346

Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
           N + ++     E  + L  + ++ N L +   +   +  L   +              P 
Sbjct: 347 NHLAEVP----ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL------PQ 396

Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELS--IPNSVEVLFINNNL 608
           NLK L +  N +    +    +   S+++L  +  R+++  E +    + +E     ++ 
Sbjct: 397 NLKQLHVETNPLREFPD--IPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

Query: 609 I 609
            
Sbjct: 452 H 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  179 bits (456), Expect = 1e-48
 Identities = 90/471 (19%), Positives = 163/471 (34%), Gaps = 81/471 (17%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS------------ 240
           L+      + L  +         +     +   +E  + AP                   
Sbjct: 13  LQEPLRHSSNLTEM--PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 241 -SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
                L +++  L SLPE        +  + A  NSL EL       L+ LLV + +   
Sbjct: 71  RQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPELPQ-SLKSLLVDNNNLKA 125

Query: 300 LSS------------NHIDE-TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           LS             N +++         L I+++ NN L ++          L+ +   
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAG 181

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
           NN +  + +    +L  L  IY   N +  +     +    L  +   NN+L  +     
Sbjct: 182 NNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LESIVAGNNILEELPE--L 233

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
           +N   L  +   +N +  +P      P L+ L++ +N ++ +        Q LT L + +
Sbjct: 234 QNLPFLTTIYADNNLLKTLP---DLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSE 286

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
           N    LS       P+L  LN S N+I  +     +    L  + + +N L ++      
Sbjct: 287 NIFSGLSE----LPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIEL---PAL 335

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSL-------------NNYYEIKD 573
             +L  L  S NHL        P NLK L +  N +                ++  E+ +
Sbjct: 336 PPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 574 GL-SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNL 623
              ++K L    N + E  ++  P SVE L +N+  +             L
Sbjct: 394 LPQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFAHETTDKL 442

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  152 bits (387), Expect = 1e-39
 Identities = 74/437 (16%), Positives = 151/437 (34%), Gaps = 79/437 (18%)

Query: 68  QNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQW--DKSKKLDL-------V 118
           +    LE L  S   L ELP ++   L++L     N + L       + L +       +
Sbjct: 88  ELPPHLESLVASCNSLTELP-ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
           P  L     L+++++ ++++K + D       +++ +    N + ++  L          
Sbjct: 147 P-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELPELQNLPF----- 196

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
                         L  +   +N L+ L           L+++   NN + ++       
Sbjct: 197 --------------LTAIYADNNSLKKL-----PDLPLSLESIVAGNNILEEL--PELQN 235

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
           L  L  +   +N L +LP+   S    +  +  + N L +L   L   L  L V +   +
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPS----LEALNVRDNYLTDLPE-LPQSLTFLDVSENIFS 290

Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
            LS              L  LN S+NE+  +          L+ L++ NN +  +     
Sbjct: 291 GLSEL---------PPNLYYLNASSNEIRSLCDLPPS----LEELNVSNNKLIELPA--- 334

Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
                L  +  S N +  +     N    L +L +  N L            ++++L ++
Sbjct: 335 -LPPRLERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPD----IPESVEDLRMN 385

Query: 419 SNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY 478
            + + E+P     L   K L +  N + +  +      + + DLR+    + +       
Sbjct: 386 -SHLAEVPELPQNL---KQLHVETNPLREFPD----IPESVEDLRMNSERVVDPYEFAHE 437

Query: 479 ELPSLEVLNLSKNKIHQ 495
               LE      +  H 
Sbjct: 438 TTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (373), Expect = 1e-37
 Identities = 81/400 (20%), Positives = 155/400 (38%), Gaps = 55/400 (13%)

Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
           V+ + L+     S++L  +P    +  +  +E Y   +     +     +  ++ V  L 
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
                                 L L+N  L+ +          L+ L    NS+  + + 
Sbjct: 67  DCLDRQ-------------AHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL 109

Query: 357 AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
              SL +L     +   +  +          L  L +SNN L  +     +N S LK +D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLEKLPE--LQNSSFLKIID 159

Query: 417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
           + +N++ ++P      P L+ +  G NQ+ ++     +NL  LT +   +N++  L    
Sbjct: 160 VDNNSLKKLP---DLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD-- 212

Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLS 536
                SLE +    N + ++     +    L  I  D+N L  +         L  LN+ 
Sbjct: 213 --LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLP---DLPPSLEALNVR 265

Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
           +N+L       +P +L +LD+  N  S L+         ++  L+AS N I  + +L  P
Sbjct: 266 DNYLTDLP--ELPQSLTFLDVSENIFSGLSELPP-----NLYYLNASSNEIRSLCDL--P 316

Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL 636
            S+E L ++NN +  + P        L R+    N + ++
Sbjct: 317 PSLEELNVSNNKLIEL-PALP---PRLERLIASFNHLAEV 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  116 bits (293), Expect = 2e-27
 Identities = 53/357 (14%), Positives = 120/357 (33%), Gaps = 44/357 (12%)

Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
           +    L      ++ LT +     +++          +               +    L 
Sbjct: 8   VSNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430
           +                  +L L+N  L ++          L+ L  S N++ E+P    
Sbjct: 67  DCLDRQ-----------AHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQ 111

Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
            L  L   +     +S +          L  L + +N +  L    L     L+++++  
Sbjct: 112 SLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDN 162

Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG 550
           N + ++     +    L  I   +N L ++      L  L  +    N L        P 
Sbjct: 163 NSLKKL----PDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PL 215

Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
           +L+ +    N +  L    E+++   +  + A +N +  + +L  P S+E L + +N + 
Sbjct: 216 SLESIVAGNNILEELP---ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLT 270

Query: 611 SVKPH----TFFDKSN--LARVDIYANDITKLDLTALRLKPVPQN-KTLPEFYLGGN 660
            +       TF D S    + +     ++  L+ ++  ++ +     +L E  +  N
Sbjct: 271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 9e-10
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 18/163 (11%)

Query: 759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
            V + + + +S +PP +     ++ +  N  + +P         +  + V+N+ ++ +  
Sbjct: 117 LVDNNNLKALSDLPPLL----EYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKL-- 168

Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
              +   SL+ +   NN +      E  NL  L+ +Y   N ++ +     +  +SL+ +
Sbjct: 169 --PDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESI 220

Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
               N L+            L  +Y  NN           L+ 
Sbjct: 221 VAGNNILEELPELQNLPF--LTTIYADNNLLKTLPDLPPSLEA 261

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 2e-08
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 34/184 (18%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPN--------HVFIGRKNMLS--- 805
             + ++ +   +S++P   P     +    N+   +P          V       LS   
Sbjct: 72  QAHELELNNLGLSSLPELPP-HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 806 -----LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
                L V+N+Q+E +        S L+++ ++NN +        D    L  +    N+
Sbjct: 131 PLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQ 184

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCAT 915
           +E +       L  L  +  D N LK     DL  +  L  +  GNN         +   
Sbjct: 185 LEELPE--LQNLPFLTAIYADNNSLKKL--PDLPLS--LESIVAGNNILEELPELQNLPF 238

Query: 916 LQEL 919
           L  +
Sbjct: 239 LTTI 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
           + S  ++  +P   P     +    N    +P       +N+  L+V  + +        
Sbjct: 323 NVSNNKLIELPALPP-RLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREF----P 373

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
           +   S++ L + ++L         +  + L +L+++ N +        +   S++ L+++
Sbjct: 374 DIPESVEDLRMNSHLAE-----VPELPQNLKQLHVETNPLREF----PDIPESVEDLRMN 424

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
             R+     F   T   L      ++   
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 22/161 (13%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
                 +  +P         +    N  + +P         + ++Y +N+ ++ +     
Sbjct: 201 YADNNSLKKLPDLPLSL-ESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTL----P 253

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
           +   SL+ L++ +N +T        +L  L       + +  +         +L  L   
Sbjct: 254 DLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSEL-------PPNLYYLNAS 305

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS---CSCATLQEL 919
            N ++S    DL  +  L ++ + NN           L+ L
Sbjct: 306 SNEIRSL--CDLPPS--LEELNVSNNKLIELPALPPRLERL 342

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-05
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 17/127 (13%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
           +  +  ++ +P       T + +  N F  +         N+  L  ++++I  + +   
Sbjct: 263 NVRDNYLTDLPELPQS-LTFLDVSENIFSGLSELP----PNLYYLNASSNEIRSLCDL-- 315

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
               SL+ L++ NN +            +L  L    N +  +         +L+ L ++
Sbjct: 316 --PPSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVPEL----PQNLKQLHVE 365

Query: 882 GNRLKSF 888
            N L+ F
Sbjct: 366 YNPLREF 372

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  179 bits (455), Expect = 1e-47
 Identities = 92/535 (17%), Positives = 176/535 (32%), Gaps = 72/535 (13%)

Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
             + L LS N +  L   D S +++   L+ L L +N I  +  + F+    L  L++S 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSE---LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDET 308
           N L ++     +S   +  +    N    L     F  L +L  L LS+       +   
Sbjct: 110 NRLQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIY 368
             + L  ++ L+L +  +   + ++ +       L L  +          +S+  L  + 
Sbjct: 167 AHLHLSCIL-LDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 369 LSENRIHHITAHLFNGLYV-------LSKLTLSN---NLLVNIDSKAFKNCSALKELDLS 418
           LS  +++                   L  +TL +       ++    F     ++ L++ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 419 SNAIVEIPS------ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
           +  I E         + + L  L    +        +   +    ++    L  ++   +
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLW 532
                    S   LN ++N             KRL  + L  N L +   V      +  
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404

Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
           L   +  L   +         W +                   SI  L+ S N +     
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWAE-------------------SILVLNLSSNMLTGSVF 445

Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN--- 649
             +P  V+VL ++NN I S+ P        L  +++ +N          +LK VP     
Sbjct: 446 RCLPPKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASN----------QLKSVPDGVFD 494

Query: 650 --KTLPEFYLGGNPFDCDCSM-----DWLPIINNNTSPSMERQYPKIMDLDNVVC 697
              +L   +L  NP+DC C       +W+     N    + R     +  D+  C
Sbjct: 495 RLTSLQYIWLHDNPWDCTCPGIRYLSEWI-----NKHSGVVRNSAGSVAPDSAKC 544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  162 bits (411), Expect = 6e-42
 Identities = 102/540 (18%), Positives = 183/540 (33%), Gaps = 51/540 (9%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
                 +D S+  +  +P  L   P  K L L +N IS++       L +L  LRL  N 
Sbjct: 30  NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI--NGVFTY 526
           I +L   +      LE L++S N++  I          L  + L  N    +     F  
Sbjct: 88  IRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGN 144

Query: 527 LAQLLWLNLSENHLVWFD---YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDAS 583
           L +L +L LS       D    A +  +   LD+   +I             ++ +L   
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643
            N +  +      N++  L ++N  +            +         ++T   +     
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 644 KPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSR 703
             V   +      +       + ++         T      +   I  + N V   +   
Sbjct: 265 CSVKLFQFFWPRPVEYLNIY-NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA 323

Query: 704 GSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDC 763
             +          + L   D                  M CP + S       +   ++ 
Sbjct: 324 LYSVFAEMNI---KMLSISDTPFI-------------HMVCPPSPS-------SFTFLNF 360

Query: 764 SEQQISTVPPRIP---MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI----EVI 816
           ++   +    +          + L  N  K       +  KNM SL   +  +       
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT-KNMSSLETLDVSLNSLNSHA 419

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNL-EKLSELYLQENRIEYIANGTFNALISL 875
            ++T     S+ VL+L +N++T      F  L  K+  L L  NRI  I       L +L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKD-VTHLQAL 475

Query: 876 QVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG 933
           Q L +  N+LKS     FD  T+  L+ ++L +NP+ C+C  ++ L  WI  +S  V++ 
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 533

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  160 bits (405), Expect = 3e-41
 Identities = 90/482 (18%), Positives = 167/482 (34%), Gaps = 67/482 (13%)

Query: 100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSR 159
           L   T+ L   ++   +L    +  L EL+VL +S + I+S+   VF    +++ L++S 
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 160 NSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQ 219
           N ++                     I C     LR LDLS N    L          +L 
Sbjct: 110 NRLQ--------------------NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149

Query: 220 NLHLENNEISQIAPNAFVALS-------------------SLRILNISSNHLVSLPEGLF 260
            L L   +  Q+       L                    SL+I N +  HLV  P  LF
Sbjct: 150 FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 261 SSCRDIS----------EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET-- 308
           S   ++S           I     +   L   L        +L+++  H+ +        
Sbjct: 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 309 -TFIGLIRLIILNLSNNELTRIDAKTFKD-----LVFLQRLDLRNNSIGYIEDNAFLSLY 362
             F     +  LN+ N  +T    +         L  L    ++N    + ++  +    
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
            ++   LS +    I           + L  + N+  +   +       L+ L L  N +
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389

Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNL----QQLTDLRLVDNNIGNLSSGMLY 478
                       + +L+  +  ++ + + ++       + +  L L  N    L+  +  
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN---MLTGSVFR 446

Query: 479 ELP-SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLS 536
            LP  ++VL+L  N+I  I        + L  + + SN L  + +GVF  L  L ++ L 
Sbjct: 447 CLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 537 EN 538
           +N
Sbjct: 506 DN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 93.8 bits (233), Expect = 9e-20
 Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 18/271 (6%)

Query: 737  ACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHV 796
             C   +            N   ++VD S + ++ VP  +P     + L  N+   +    
Sbjct: 15   VCALALIVGSMTPF---SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPD 71

Query: 797  FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
                  +  L +++++I  +    F     L+ L + +N + +        +  L  L L
Sbjct: 72   ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDL 128

Query: 857  QENRIEYI-ANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCAT 915
              N  + +     F  L  L  L L   + +         +  L  + L    +      
Sbjct: 129  SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGE 187

Query: 916  LQELQ------TWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIA 969
             + LQ        ++ + N +        V    +     ++              + ++
Sbjct: 188  TESLQIPNTTVLHLVFHPNSLFSVQ----VNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 970  SIMVSDYLPFMIITFLMFLVFLILIIFMFVF 1000
             +     L  + +  +       + +F F +
Sbjct: 244  ELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  157 bits (400), Expect = 5e-43
 Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 8/206 (3%)

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
            + LDL  N + ++   +F S   L  + LS   I  I    +  L  LS L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIE-NGSFKNLQ 457
           ++   AF   S+L++L      +  + +  +  L  LK L++  N I   +    F NL 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEV----LNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
            L  L L  N I ++    L  L  + +    L+LS N ++ I+ G F K  RL  + LD
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALD 208

Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSEN 538
           +N L  + +G+F  L  L  + L  N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  156 bits (396), Expect = 2e-42
 Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 9/206 (4%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            LDLS N L    +   +F     L +L+LS  E+  I+   ++ L  L  L L  N I 
Sbjct: 32  NLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCS 410
            +   AF  L +L  +   E  +  +       L  L +L +++NL+ +    + F N +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 411 ALKELDLSSNAIVEIP----SALSELPFLK-TLDLGENQISKIENGSFKNLQQLTDLRLV 465
            L+ LDLSSN I  I       L ++P L  +LDL  N ++ I+ G+FK + +L +L L 
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALD 208

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKN 491
            N + ++  G+   L SL+ + L  N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  151 bits (384), Expect = 5e-41
 Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 21/234 (8%)

Query: 179 SNSGEKIECSGG----------MDLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
                  +C                + LDLS N LR L    +    +   LQ L L   
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPE---LQVLDLSRC 62

Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
           EI  I   A+ +LS L  L ++ N + SL  G FS    + ++ A + +L  L       
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ----R 342
           L+ L  L+++ N + S  + E  F  L  L  L+LS+N++  I     + L  +      
Sbjct: 123 LKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
           LDL  N + +I+  AF  +  L  + L  N++  +   +F+ L  L K+ L  N
Sbjct: 182 LDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  131 bits (331), Expect = 8e-34
 Identities = 55/273 (20%), Positives = 91/273 (33%), Gaps = 37/273 (13%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
                           +IP  L      K LDL  N +  + + SF +  +L  L L   
Sbjct: 6   VVPN-ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC 62

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
            I  +  G    L  L  L L+ N I  + +G F     L  +      L  + N    +
Sbjct: 63  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122

Query: 527 LAQLLWLNLSENHLVWFDYAMV---PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDAS 583
           L  L  LN++ N +  F          NL+ LD+  N I S+         L    +   
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLH--QMPLL 178

Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643
           +                 L ++ N +  ++P  F  +  L  + +  N +  +       
Sbjct: 179 NLS---------------LDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFD- 221

Query: 644 KPVPQNKTLPEFYLGGNPFDCDCSM-----DWL 671
               +  +L + +L  NP+DC C        WL
Sbjct: 222 ----RLTSLQKIWLHTNPWDCSCPRIDYLSRWL 250

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  125 bits (316), Expect = 7e-32
 Identities = 64/286 (22%), Positives = 102/286 (35%), Gaps = 79/286 (27%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
                       +T+NL    +    L   S     ELQVL++S   I++I D  + SL+
Sbjct: 17  LNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
           ++ TL L+ N I+ +                                         G +S
Sbjct: 77  HLSTLILTGNPIQSLAL---------------------------------------GAFS 97

Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
           G++    LQ L      ++ +       L +L+ LN++ N + S                
Sbjct: 98  GLSS---LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------- 140

Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII----LNLSNNEL 326
                        F  L  L  LDLSSN + S  I  T    L ++ +    L+LS N +
Sbjct: 141 ---------LPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
             I    FK++  L+ L L  N +  + D  F  L +L  I+L  N
Sbjct: 190 NFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  117 bits (296), Expect = 3e-29
 Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 745 PKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNML 804
           P                 C E     +P  +P    ++ L  N  + + ++ F     + 
Sbjct: 2   PCVEVV------PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYI 864
            L ++  +I+ I +  +  LS L  L L  N I       F  L  L +L   E  +  +
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 865 ANGTFNALISLQVLQLDGNRLKSF---RAFDLNTNSMLRKVYLGNN 907
            N     L +L+ L +  N ++SF     F   TN  L  + L +N
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN--LEHLDLSSN 159

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  113 bits (284), Expect = 1e-27
 Identities = 58/267 (21%), Positives = 105/267 (39%), Gaps = 46/267 (17%)

Query: 16  SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNI 70
            +  I+  C           N   +P       N+      L L       + + SF + 
Sbjct: 6   VVPNITYQCM--------ELNFYKIPD------NLPFSTKNLDLSFNPLRHLGSYSFFSF 51

Query: 71  YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
             L+ L +S C++  +    +  L +L  L +    +Q        L  G+  GL  LQ 
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-------SLALGAFSGLSSLQK 104

Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
           L    +N+ S+ +     L  ++ LN++ N I+      +                 S  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----------------FSNL 148

Query: 191 MDLRILDLSHNKLRTL--GDYSGITKFRRLQ-NLHLENNEISQIAPNAFVALSSLRILNI 247
            +L  LDLS NK++++   D   + +   L  +L L  N ++ I P AF  +  L+ L +
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELAL 207

Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKN 274
            +N L S+P+G+F     + +I+   N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  113 bits (284), Expect = 1e-27
 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 767 QISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI-EVILNQTFN 822
            I ++        +    +        ++ N      K +  L V ++ I    L + F+
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKL----SELYLQENRIEYIANGTFNALISLQVL 878
            L++L+ L L +N I   Y  +   L ++      L L  N + +I  G F  +  L+ L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKEL 205

Query: 879 QLDGNRLKS--FRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936
            LD N+LKS     FD  T+  L+K++L  NP+ CSC  +  L  W+  NS K +     
Sbjct: 206 ALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC 263

Query: 937 SCVIDESSPPIR 948
           S     S  P+R
Sbjct: 264 SG----SGKPVR 271

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (425), Expect = 1e-42
 Identities = 143/558 (25%), Positives = 215/558 (38%), Gaps = 82/558 (14%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNS----IRDID 166
           +     V  SL  L  L+ L +S+S+I  S+S   F   A++ +L+LSRNS    +  + 
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 167 TLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
           +LG                 CSG   L+ L++S N L   G  SG  K   L+ L L  N
Sbjct: 121 SLG----------------SCSG---LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 227 EISQIAPNAFVA---LSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSR 281
            IS      +V       L+ L IS N +   +     S C ++  +    N+    +  
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP- 217

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKTFKDLVF 339
                   L  LD+S N LS +    +  I     L +LN+S+N+    I     K    
Sbjct: 218 -FLGDCSALQHLDISGNKLSGD-F--SRAISTCTELKLLNISSNQFVGPIPPLPLKS--- 270

Query: 340 LQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNL 397
           LQ L L  N   G I D    +   L  + LS N  +  +     +   +L  L LS+N 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNN 329

Query: 398 LV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPF-LKTLDLGENQIS-KIENGSF 453
               +          LK LDLS N    E+P +L+ L   L TLDL  N  S  I     
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 454 KN-LQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLA 508
           +N    L +L L +N   G +    L     L  L+LS N +   I   +G+     +L 
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSL---SKLR 445

Query: 509 AIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVP------GNLKWLDIHGNY 561
            ++L  N L  +I     Y+  L  L L  N L       +P       NL W+ +  N 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNR 501

Query: 562 IS-SLNNYYEIKDGLSIKNLDASHNRI-----LEISELSIPNSVEVLFINNNLIKSVKPH 615
           ++  +     I    ++  L  S+N        E+ +     S+  L +N NL     P 
Sbjct: 502 LTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCR---SLIWLDLNTNLFNGTIPA 556

Query: 616 TFFDKSNLARVDIYANDI 633
             F +S     +  A   
Sbjct: 557 AMFKQSGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (421), Expect = 3e-42
 Identities = 121/543 (22%), Positives = 211/543 (38%), Gaps = 79/543 (14%)

Query: 128 LQVLNISSSNIKSISDDV---FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
           +  +++SS  +      V     SL  +++L LS + I                  +G  
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI------------------NGSV 93

Query: 185 IECSGGMDLRILDLSHNKLR-TLGDYSGITKFRRLQNLHLENNEIS-QIAPNAFVALSSL 242
                   L  LDLS N L   +   + +     L+ L++ +N +      +  + L+SL
Sbjct: 94  SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 243 RILNISSNHLV-SLPEGL--FSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSN 298
            +L++S+N +  +   G      C ++  +    N +  ++       LE    LD+SSN
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE---FLDVSSN 210

Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNA 357
           + S+  I          L  L++S N+L+   ++       L+ L++ +N   G I    
Sbjct: 211 NFSTG-IPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-- 265

Query: 358 FLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD 416
            L L +L  + L+EN+    I   L      L+ L LS N         F +CS L+ L 
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 417 LSSNAIV-EIP-SALSELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDNNI-GNL 472
           LSSN    E+P   L ++  LK LDL  N+ S ++          L  L L  NN  G +
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384

Query: 473 SSGML-YELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVFTYL 527
              +      +L+ L L  N    +I   +        L ++ L  N+L+  I      L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 528 AQLLWLNLSENHLVWFDYAMVP------GNLKWLDIHGNYIS-----SLNNYYEIKDGLS 576
           ++L  L L  N L       +P        L+ L +  N ++      L+N        +
Sbjct: 442 SKLRDLKLWLNML----EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC------TN 491

Query: 577 IKNLDASHNRI-----LEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631
           +  +  S+NR+       I  L    ++ +L ++NN      P    D  +L  +D+  N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLE---NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

Query: 632 DIT 634
              
Sbjct: 549 LFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  165 bits (420), Expect = 5e-42
 Identities = 109/521 (20%), Positives = 183/521 (35%), Gaps = 69/521 (13%)

Query: 145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD-LRILDLSHNKL 203
           V C    + +++LS   +                            +  L  L LS++ +
Sbjct: 45  VTCRDDKVTSIDLSSKPLN---------------VGFSAVSSSLLSLTGLESLFLSNSHI 89

Query: 204 RTLGDYSGITKFRRLQNLHLENNEIS-QI-APNAFVALSSLRILNISSNHLV-SLPEGLF 260
              G  SG      L +L L  N +S  +    +  + S L+ LN+SSN L         
Sbjct: 90  N--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147

Query: 261 SSCRDISEIYAQKNSL---VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
                +  +    NS+     +   L     +L  L +S N +S     +      + L 
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG----DVDVSRCVNLE 203

Query: 318 ILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH 375
            L++S+N  +  I      D   LQ LD+  N + G        +   L  + +S N+  
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFV 260

Query: 376 -HITAHLFNGLYVLSKLTLSNNLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSEL 432
             I       L  LS   L+ N     I       C  L  LDLS N     +P      
Sbjct: 261 GPIPPLPLKSLQYLS---LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 433 PFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSK 490
             L++L L  N  S ++   +   ++ L  L L  N   G L   +     SL  L+LS 
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 491 NKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYA 546
           N     I   +    KN  L  + L +N  T  I    +  ++L+ L+LS N+L      
Sbjct: 378 NNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS----G 432

Query: 547 MVP------GNLKWLDIHGNYIS-SLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV 599
            +P        L+ L +  N +   +    E+    +++ L    N +       IP+ +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDL----TGEIPSGL 486

Query: 600 ------EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT 634
                   + ++NN +    P       NLA + +  N  +
Sbjct: 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  158 bits (402), Expect = 8e-40
 Identities = 113/496 (22%), Positives = 178/496 (35%), Gaps = 70/496 (14%)

Query: 69  NIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRE 127
            + SL+ L ++  K   E+P  +      L  L ++  +           VP        
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-------GAVPPFFGSCSL 319

Query: 128 LQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDI--DTLGFAVRRASAESNSGEK 184
           L+ L +SS+N    +  D    +  ++ L+LS N       ++L                
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT--------------- 364

Query: 185 IECSGGMDLRILDLSHNKLR-TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLR 243
              S    L  LDLS N     +           LQ L+L+NN  +   P      S L 
Sbjct: 365 -NLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 244 ILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLS 301
            L++S N+L  ++P  L  S   + ++    N L  E+ + L   ++ L  L L  N L+
Sbjct: 422 SLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLT 479

Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLS 360
              I          L  ++LSNN LT    K    L  L  L L NNS  G I       
Sbjct: 480 GE-IPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGD 536

Query: 361 LYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
             +L  + L+ N  +  I A +F      S   ++ N +        KN    KE   + 
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFK----QSGK-IAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 420 NAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-------- 468
           N +         L+ L      ++         + +F N   +  L +  N         
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLAAIRLDSNFLT-DINGVF 524
           IG++          L +LNL  N I   I  E+G     + L  + L SN L   I    
Sbjct: 652 IGSMP--------YLFILNLGHNDISGSIPDEVGDL---RGLNILDLSSNKLDGRIPQAM 700

Query: 525 TYLAQLLWLNLSENHL 540
           + L  L  ++LS N+L
Sbjct: 701 SALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  157 bits (400), Expect = 2e-39
 Identities = 113/540 (20%), Positives = 162/540 (30%), Gaps = 131/540 (24%)

Query: 66  SFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
                 +LE L +S+      +P                                  L  
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIP---------------------------------FLGD 221

Query: 125 LRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGE 183
              LQ L+IS + +    S  +  +   ++ LN+S N                     G 
Sbjct: 222 CSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQF------------------VGP 262

Query: 184 KIECSGGMDLRILDLSHNKLRTLGDYSG------ITKFRRLQNLHLENNEISQIAPNAFV 237
            I       L+ L L+ NK       +G            L  L L  N      P  F 
Sbjct: 263 -IPPLPLKSLQYLSLAENKF------TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 238 ALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDL 295
           + S L  L +SSN+    LP       R +  +    N    EL   L +    LL LDL
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI-GYI 353
           SSN+ S   +          L  L L NN  T +I   T  +   L  L L  N + G I
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTI 434

Query: 354 EDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
             +   SL  L  + L  N +   I   L   +  L  L L  N L         NC+ L
Sbjct: 435 PSS-LGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 413 KELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDN 467
             + LS+N +  EIP  +  L  L  L L  N  S    G       + + L  L L  N
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS----GNIPAELGDCRSLIWLDLNTN 548

Query: 468 N--------IGNLSSGM--------------------------------------LYELP 481
                    +   S  +                                      L  L 
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608

Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHL 540
           +    N++          TF+ N  +  + +  N L+  I      +  L  LNL  N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 1e-34
 Identities = 108/454 (23%), Positives = 174/454 (38%), Gaps = 76/454 (16%)

Query: 65  KSFQNIYSLEELKISNCKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
             F +   LE L +S+     ELP+D    +R LK L ++              +P SL 
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-------GELPESLT 364

Query: 124 GLR-ELQVLNISSSNIK-SISDDVF-CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
            L   L  L++SS+N    I  ++       +Q L L  N                    
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF------------------ 406

Query: 181 SGEKIECSGGM-DLRILDLSHNKLRTLGDYSG-----ITKFRRLQNLHLENNEISQIAPN 234
           +G+         +L  L LS N L      SG     +    +L++L L  N +    P 
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYL------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 235 AFVALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLV 292
             + + +L  L +  N L   +P GL S+C +++ I    N L  E+ + +  +LE L +
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIG-RLENLAI 518

Query: 293 LDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKTFKDLVFLQRLDLRNNSI 350
           L LS+N  S  +I     +G    LI L+L+ N     I A  FK     Q   +  N I
Sbjct: 519 LKLSNNSFSG-NIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI 570

Query: 351 GYIEDNAFLSLYNLHTIYLSENRIH---HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
                    +       + + N +      +  L   L   +   +++ +     S  F 
Sbjct: 571 AGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFD 629

Query: 408 NCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENG----SFKNLQQLTDL 462
           N  ++  LD+S N +   IP  +  +P+L  L+LG N IS    G       +L+ L  L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS----GSIPDEVGDLRGLNIL 685

Query: 463 RLVDNNIGNLSSGM----LYELPSLEVLNLSKNK 492
            L  N +     G     +  L  L  ++LS N 
Sbjct: 686 DLSSNKL----DGRIPQAMSALTMLTEIDLSNNN 715

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.4 bits (124), Expect = 2e-06
 Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 780 THVYLDGNTFK-TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
            ++ L  N F   IP+ +      +  L ++ +     +   F   S L+ L L +N  +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 839 -HFYGYEFDNLEKLSELYLQENRIE-YIANGTFNALISLQVLQLDGNRLKS--FRAFDLN 894
                     +  L  L L  N     +     N   SL  L L  N            N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 895 TNSMLRKVYLGNNPFS-------CSCATLQELQ 920
             + L+++YL NN F+        +C+ L  L 
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 42/176 (23%), Positives = 60/176 (34%), Gaps = 39/176 (22%)

Query: 780 THVYLDGNTFK-TIPNHVFIGRKNMLS-LYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             + L  N F   I  ++    KN L  LY+ N+     +  T +  S L  LHL  N  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-- 428

Query: 838 THFYG---YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL--------- 885
            +  G       +L KL +L L  N +E         + +L+ L LD N L         
Sbjct: 429 -YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 886 --KSFRAFDLNTN-------------SMLRKVYLGNNPFS-------CSCATLQEL 919
              +     L+ N               L  + L NN FS         C +L  L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 40/176 (22%)

Query: 780 THVYLDGNTFK-TIPNHVFIGR-KNMLSLYVNNSQIE-VILNQTFNGLSSLQVLHLENNL 836
           T + L  N+    +     +G    +  L V+++ ++          L+SL+VL L  N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 837 IT---HFYGYEFDNLEKLSELYLQENRIEYIANGT--FNALISLQVLQLDGN-------- 883
           I+          D   +L  L +  N+I    +G    +  ++L+ L +  N        
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKI----SGDVDVSRCVNLEFLDVSSNNFSTGIPF 218

Query: 884 --RLKSFRAFDLNTN-------------SMLRKVYLGNNPFS-----CSCATLQEL 919
                + +  D++ N             + L+ + + +N F          +LQ L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 8e-04
 Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 18/140 (12%)

Query: 780 THVYLDGNTFK-TIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             ++L  N    TIP+   +G    +  L +  + +E  + Q    + +L+ L L+ N +
Sbjct: 421 VSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 838 THFYG---YEFDNLEKLSELYLQENRIEYIANGTF----NALISLQVLQLDGNRLKSFRA 890
           T   G       N   L+ + L  NR+     G        L +L +L+L  N       
Sbjct: 479 T---GEIPSGLSNCTNLNWISLSNNRL----TGEIPKWIGRLENLAILKLSNNSFSGNIP 531

Query: 891 FDLNTNSMLRKVYLGNNPFS 910
            +L     L  + L  N F+
Sbjct: 532 AELGDCRSLIWLDLNTNLFN 551

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  148 bits (375), Expect = 2e-40
 Identities = 56/190 (29%), Positives = 88/190 (46%), Gaps = 11/190 (5%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C+C      + N+VDC  + ++ +P  +P   T + L+ NT K IP   F   K 
Sbjct: 4   HCPAACTC------SNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKK 57

Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           +  + ++N+QI  +    F GL SL  L L  N IT      F+ L  L  L L  N+I 
Sbjct: 58  LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117

Query: 863 YIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
            +    F  L +L +L L  N+L++     F       ++ ++L  NPF C C  L+ L 
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA--IQTMHLAQNPFICDC-HLKWLA 174

Query: 921 TWIIDNSNKV 930
            ++  N  + 
Sbjct: 175 DYLHTNPIET 184

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  112 bits (281), Expect = 7e-28
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
             + LE N I  I P AF     LR +++S+N +  L    F   R ++ +    N + E
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
           L + LF  L  L +L L++N ++   +    F  L  L +L+L +N+L  I   TF  L 
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 339 FLQRLDLRNN 348
            +Q + L  N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  107 bits (268), Expect = 4e-26
 Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
             + L  N+I  I   AF     L  I LS N+I  +    F GL  L+ L L  N +  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           +    F+   +L+ L L++N I  +   A  +L  L  L L +N++  I  G+F  L+ +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 460 TDLRLVDN 467
             + L  N
Sbjct: 155 QTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  103 bits (260), Expect = 4e-25
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
            E+ L  N I  IP  A S    L+ +DL  NQIS++   +F+ L+ L  L L  N I  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
           L   +   L SL++L L+ NKI+ + +  F+    L  + L  N L  I  G F+ L  +
Sbjct: 95  LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI 154

Query: 531 LWLNLSEN------HLVWF 543
             ++L++N      HL W 
Sbjct: 155 QTMHLAQNPFICDCHLKWL 173

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  100 bits (250), Expect = 9e-24
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 2/129 (1%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            + L  N +    I    F    +L  ++LSNN+++ +    F+ L  L  L L  N I 
Sbjct: 36  EIRLEQNTIKV--IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
            +  + F  L++L  + L+ N+I+ +    F  L+ L+ L+L +N L  I    F    A
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 412 LKELDLSSN 420
           ++ + L+ N
Sbjct: 154 IQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.6 bits (189), Expect = 1e-15
 Identities = 35/184 (19%), Positives = 73/184 (39%), Gaps = 49/184 (26%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           K LT            ++ +++    + PG+    ++L+ +++S++ I  ++ D F  L 
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
           ++ +L L  N I ++                                           + 
Sbjct: 81  SLNSLVLYGNKITELPK---------------------------------------SLFE 101

Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
           G+     LQ L L  N+I+ +  +AF  L +L +L++  N L ++ +G FS  R I  ++
Sbjct: 102 GLFS---LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158

Query: 271 AQKN 274
             +N
Sbjct: 159 LAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 18/139 (12%)

Query: 37  LSFVPTDLITKLNIDCDATVL-LD----SSITTKSFQNIYSLEELKISNCKLVELPVDVF 91
           L+ +PT      N+    T + L+      I   +F     L  + +SN ++ EL  D F
Sbjct: 23  LTEIPT------NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 92  SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
            GLR+L  L +    +        +L     +GL  LQ+L ++++ I  +  D F  L N
Sbjct: 77  QGLRSLNSLVLYGNKIT-------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN 129

Query: 152 IQTLNLSRNSIRDIDTLGF 170
           +  L+L  N ++ I    F
Sbjct: 130 LNLLSLYDNKLQTIAKGTF 148

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 50/186 (26%)

Query: 504 NKRLAAI-----------RLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG- 550
            K L  I           RL+ N +  I  G F+   +L  ++LS N +      + P  
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS----ELAPDA 75

Query: 551 -----NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
                +L  L ++GN I+ L     + +GL                      S+++L +N
Sbjct: 76  FQGLRSLNSLVLYGNKITELPK--SLFEGLF---------------------SLQLLLLN 112

Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
            N I  ++   F D  NL  + +Y N +  +        P+   +T+   +L  NPF CD
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRAIQTM---HLAQNPFICD 167

Query: 666 CSMDWL 671
           C + WL
Sbjct: 168 CHLKWL 173

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 25/155 (16%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
           ++ E+++    +  +P   FS  + L+R+ ++   +        +L P +  GLR L  L
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-------ELAPDAFQGLRSLNSL 85

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
            +  + I  +   +F  L ++Q L L+ N I  +    F                     
Sbjct: 86  VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-----------------QDLH 128

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
           +L +L L  NKL+T+      +  R +Q +HL  N
Sbjct: 129 NLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  147 bits (374), Expect = 3e-40
 Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 19/218 (8%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIP-NHVFIGRK 801
            CP+ C C          VDCS Q+++ +P  IP     + L+ N F  +    +F    
Sbjct: 4   ACPEKCRC------EGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLP 57

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
            +  +  +N++I  I    F G S +  + L +N + +     F  LE L  L L+ NRI
Sbjct: 58  QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117

Query: 862 EYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQEL 919
             + N +F  L S+++L L  N++ +    AFD   +  L  + L  NPF+C+C  L  L
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPFNCNC-YLAWL 174

Query: 920 QTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDLNSTT 957
             W+           +  C      P   KEI +    
Sbjct: 175 GEWLRKKRIVTG---NPRC----QKPYFLKEIPIQDVA 205

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  107 bits (270), Expect = 2e-26
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 2/129 (1%)

Query: 341 QRLDLRNNSIGYIEDNA-FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
             L L NN    +E    F  L  L  I  S N+I  I    F G   ++++ L++N L 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQ 458
           N+  K FK   +LK L L SN I  + + +   L  ++ L L +NQI+ +  G+F  L  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 459 LTDLRLVDN 467
           L+ L L+ N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  105 bits (263), Expect = 2e-25
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 413 KELDLSSNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
            EL L++N    + +     +LP L+ ++   N+I+ IE G+F+    + ++ L  N + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQ 529
           N+   M   L SL+ L L  N+I  +   +F     +  + L  N +T +  G F  L  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 530 LLWLNLSEN------HLVWF 543
           L  LNL  N      +L W 
Sbjct: 155 LSTLNLLANPFNCNCYLAWL 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  100 bits (251), Expect = 7e-24
 Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 36/180 (20%)

Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228
              G  ++CS                 L L++N+   L       K  +L+ ++  NN+I
Sbjct: 10  RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69

Query: 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
           + I   AF   S +  + ++SN L ++                           +F  LE
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENVQH------------------------KMFKGLE 105

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
            L  L L SN ++   +   +FIGL  + +L+L +N++T +    F  L  L  L+L  N
Sbjct: 106 SLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 98.2 bits (245), Expect = 4e-23
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            L L++N  +        F  L +L  +N SNN++T I+   F+    +  + L +N + 
Sbjct: 36  ELRLNNNEFTVLE-ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
            ++   F  L +L T+ L  NRI  +    F GL  +  L+L +N +  +   AF    +
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154

Query: 412 LKELDLSSN 420
           L  L+L +N
Sbjct: 155 LSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 80.1 bits (198), Expect = 8e-17
 Identities = 50/265 (18%), Positives = 84/265 (31%), Gaps = 101/265 (38%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVD 466
            C     +D S+  + +IP  +    +   L L  N+ + +E  G FK L QL  +   +
Sbjct: 10  RCEG-TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN 66

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
           N I ++  G       +  + L+ N++  ++                       + +F  
Sbjct: 67  NKITDIEEGAFEGASGVNEILLTSNRLENVQ-----------------------HKMFKG 103

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586
           L  L  L L  N +                      + + N  +   GLS          
Sbjct: 104 LESLKTLMLRSNRI----------------------TCVGN--DSFIGLS---------- 129

Query: 587 ILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
                      SV +L + +N I +V     FD                  L +L     
Sbjct: 130 -----------SVRLLSLYDNQITTV-APGAFDT-----------------LHSL----- 155

Query: 647 PQNKTLPEFYLGGNPFDCDCSMDWL 671
               TL    L  NPF+C+C + WL
Sbjct: 156 ---STL---NLLANPFNCNCYLAWL 174

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 33/180 (18%), Positives = 68/180 (37%), Gaps = 50/180 (27%)

Query: 72  SLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
              EL+++N +   L    +F  L  L+++  +   +        D+  G+ +G   +  
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-------DIEEGAFEGASGVNE 85

Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
           + ++S+ ++++   +F  L +++TL L  N I  +    F                    
Sbjct: 86  ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF-------------------- 125

Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
                                      ++ L L +N+I+ +AP AF  L SL  LN+ +N
Sbjct: 126 ----------------------IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 64  TKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
           T  F+ +  L ++  SN K+ ++    F G   +  + + +  L+       ++      
Sbjct: 50  TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-------NVQHKMFK 102

Query: 124 GLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           GL  L+ L + S+ I  + +D F  L++++ L+L  N I  +
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 7/76 (9%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
            ++  K F+ + SL+ L + + ++  +  D F GL +++ L++    +         + P
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-------TVAP 146

Query: 120 GSLDGLRELQVLNISS 135
           G+ D L  L  LN+ +
Sbjct: 147 GAFDTLHSLSTLNLLA 162

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  151 bits (384), Expect = 3e-40
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 13/249 (5%)

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-G 351
                + ++   I        I L        +L  I    F     L+++++  N +  
Sbjct: 14  FLCQESKVTE--IPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 352 YIEDNAFLSLYNLHTIYLSE-NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
            IE + F +L  LH I + + N + +I    F  L  L  L +SN  + ++      +  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 411 ALKELDLSSNA-IVEIPS-ALSELPF-LKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
               LD+  N  I  I   +   L F    L L +N I +I N +F   Q        +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
           N+  L + + +      +L++S+ +IH +     E  K+L      +  L  +      L
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL--RARSTYNLKKL-PTLEKL 245

Query: 528 AQLLWLNLS 536
             L+  +L+
Sbjct: 246 VALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  149 bits (379), Expect = 1e-39
 Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 11/233 (4%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-IAPNAFVALSSLRILNIS-S 249
           +   L     KLR +   +  + F  L+ + +  N++ + I  + F  L  L  + I  +
Sbjct: 31  NAIELRFVLTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHIDET 308
           N+L+ +    F +  ++  +      +  L         Q ++LD+  N ++ +  I+  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--IERN 147

Query: 309 TFIGL-IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTI 367
           +F+GL    +IL L+ N +  I    F      +     NN++  + ++ F        +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 368 YLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
            +S  RIH + ++    L  L   +  N   +       +   AL E  L+  
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  125 bits (316), Expect = 3e-31
 Identities = 55/281 (19%), Positives = 103/281 (36%), Gaps = 57/281 (20%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP-GSLDGLRELQV 130
           +  EL+    KL  +    FSG  +L+++ I+       ++  L+++       L +L  
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-------QNDVLEVIEADVFSNLPKLHE 83

Query: 131 LNISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
           + I  +N +  I+ + F +L N+Q L +S   I+ +  +                     
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-----------------IH 126

Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS-LRILNIS 248
            +   +LD+                          N  I  I  N+FV LS    IL ++
Sbjct: 127 SLQKVLLDIQD------------------------NINIHTIERNSFVGLSFESVILWLN 162

Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET 308
            N +  +    F+  +      +  N+L EL   +FH     ++LD+S   + S  +   
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--LPSY 220

Query: 309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
               L +L   +  N  L ++     + LV L    L   S
Sbjct: 221 GLENLKKLRARSTYN--LKKLPT--LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  124 bits (314), Expect = 5e-31
 Identities = 60/348 (17%), Positives = 109/348 (31%), Gaps = 54/348 (15%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           CS  +      + + EIPS L        L     ++  I+ G+F     L  + +  N+
Sbjct: 9   CS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65

Query: 469 I-GNLSSGMLYELPSLEVLNLSK-NKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFT 525
           +   + + +   LP L  + + K N +  I    F+    L  + + +  +  + +    
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
           +  Q + L++ +N             +    I  N    L+             L  + N
Sbjct: 126 HSLQKVLLDIQDN-------------INIHTIERNSFVGLSF--------ESVILWLNKN 164

Query: 586 RILEISE--LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL------D 637
            I EI     +     E+   +NN ++ +    F   S    +DI    I  L      +
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 638 LTALRLKPVPQNKTLPEF---------YLGGNPFDCDCSMDWL-------PIINNNTSPS 681
           L  LR +     K LP            L   P  C    +W        PI N +    
Sbjct: 225 LKKLRARSTYNLKKLPTLEKLVALMEASL-TYPSHCCAFANWRRQISELHPICNKSILRQ 283

Query: 682 MERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC--PYDIHCF 727
                 +     + + +   S  S     +       LC    D+ C 
Sbjct: 284 EVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCS 331

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  119 bits (300), Expect = 3e-29
 Identities = 59/309 (19%), Positives = 97/309 (31%), Gaps = 70/309 (22%)

Query: 21  SVTCNLNYLGKGGGSNLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELK 77
              C          S ++ +P+DL     +L      T L    I   +F     LE+++
Sbjct: 13  VFLCQ--------ESKVTEIPSDLPRNAIELRFV--LTKL--RVIQKGAFSGFGDLEKIE 60

Query: 78  ISNCKLVE-LPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
           IS   ++E +  DVFS L  L  + I    NL         + P +   L  LQ L IS+
Sbjct: 61  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-------YINPEAFQNLPNLQYLLISN 113

Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRI 195
           + IK + D           L++  N                                + I
Sbjct: 114 TGIKHLPDVHKIHSLQKVLLDIQDN--------------------------------INI 141

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
             +  N    L              L L  N I +I  +AF       +    +N+L  L
Sbjct: 142 HTIERNSFVGLS--------FESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
           P  +F        +   +  +  L       L++L        +L        T   L+ 
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP----TLEKLVA 247

Query: 316 LIILNLSNN 324
           L+  +L+  
Sbjct: 248 LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  102 bits (255), Expect = 3e-23
 Identities = 34/200 (17%), Positives = 64/200 (32%), Gaps = 35/200 (17%)

Query: 744 CP-KNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
           C  + C C      +  V  C E +++ +P  +P +A  +       + I    F G  +
Sbjct: 2   CHHRICHC------SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGD 55

Query: 803 MLSLYVNNS--------------------------QIEVILNQTFNGLSSLQVLHLENNL 836
           +  + ++ +                           +  I  + F  L +LQ L + N  
Sbjct: 56  LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115

Query: 837 ITHFYGYEFDNLEKLSELYLQEN-RIEYIANGTFNAL-ISLQVLQLDGNRLKSFRAFDLN 894
           I H       +  +   L +Q+N  I  I   +F  L     +L L+ N ++       N
Sbjct: 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

Query: 895 TNSMLRKVYLGNNPFSCSCA 914
              +       NN       
Sbjct: 176 GTQLDELNLSDNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 79.9 bits (197), Expect = 7e-16
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 767 QISTVPPRIPMDAT---HVYLDGNTF-KTIPNHVFIG-RKNMLSLYVNNSQIEVILNQTF 821
            I  +P    + +     + +  N    TI  + F+G     + L++N + I+ I N  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
           NG    ++   +NN +       F        L +   RI  + +     L  L+     
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST- 233

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC 913
              LK     +      L +  L   P  C  
Sbjct: 234 -YNLKKLPTLEKLVA--LMEASL-TYPSHCCA 261

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  147 bits (374), Expect = 4e-40
 Identities = 50/229 (21%), Positives = 82/229 (35%), Gaps = 31/229 (13%)

Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
            Q L L    +  I  +AF  L ++  + +S +                        +L 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-----------------------VTLQ 69

Query: 278 ELSRGLFHKLEQLLVLDLSSN-HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF-K 335
           +L    F+ L ++  +++ +  +L+   ID      L  L  L + N  L      T   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127

Query: 336 DLVFLQRLDL-RNNSIGYIEDNAFLSLYN-LHTIYLSENRIHHITAHLFNGLYVLSKLTL 393
                  L++  N  +  I  NAF  L N   T+ L  N    +  + FNG  + +    
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187

Query: 394 SNNLLVNIDSKAFKN-CSALKELDLSSNAIVEIPS-ALSELPFLKTLDL 440
            N  L  ID  AF    S    LD+S  ++  +PS  L  L  L   + 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  137 bits (346), Expect = 2e-36
 Identities = 39/203 (19%), Positives = 82/203 (40%), Gaps = 9/203 (4%)

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNN-SI 350
           L L   HL +  I    F  L  +  + +S +  L ++++ +F +L  +  +++RN  ++
Sbjct: 36  LKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93

Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHI-TAHLFNGLYVLSKLTLS-NNLLVNIDSKAFKN 408
            YI+ +A   L  L  + +    +             +   L ++ N  + +I   AF+ 
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153

Query: 409 -CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQ-LTDLRLV 465
            C+    L L +N    +         L  + L +N+ ++ I+  +F  +    + L + 
Sbjct: 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS 213

Query: 466 DNNIGNLSSGMLYELPSLEVLNL 488
             ++  L S  L  L  L   N 
Sbjct: 214 QTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  135 bits (341), Expect = 1e-35
 Identities = 39/209 (18%), Positives = 79/209 (37%), Gaps = 12/209 (5%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDL-RNNSIGYIEDNAFLSLYNLHTIYLSENR- 373
              L L    L  I +  F +L  + R+ +  + ++  +E ++F +L  +  I +   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNI-DSKAFKNCSALKELDLSSN-AIVEIPS-ALS 430
           + +I       L +L  L + N  L    D     +      L+++ N  +  IP  A  
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ 152

Query: 431 ELP-FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-IGNLSSGMLYELPS-LEVLN 487
            L     TL L  N  + ++  +F   + L  + L  N  +  +       + S   +L+
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
           +S+  +  +     E  K L      + +
Sbjct: 212 VSQTSVTALPSKGLEHLKEL---IARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  118 bits (297), Expect = 1e-29
 Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 78/290 (26%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGF 170
            K +  +P         Q L +  +++++I    F +L NI  + +S + +++ +++  F
Sbjct: 20  CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF 76

Query: 171 AVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ 230
                                 +  +++ +                           ++ 
Sbjct: 77  -----------------YNLSKVTHIEIRN------------------------TRNLTY 95

Query: 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290
           I P+A   L  L+ L I +  L   P+                           +  +  
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTK-----------------------VYSTDIF 132

Query: 291 LVLDLSSN-HLSSNHIDETTFIGLIR-LIILNLSNNELTRIDAKTFKDLVFLQRLDL-RN 347
            +L+++ N +++S  I    F GL    + L L NN  T +    F     L  + L +N
Sbjct: 133 FILEITDNPYMTS--IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKN 189

Query: 348 NSIGYIEDNAFLSLYN-LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
             +  I+ +AF  +Y+    + +S+  +  + +        L +L   N 
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH---LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  107 bits (268), Expect = 6e-26
 Identities = 41/256 (16%), Positives = 84/256 (32%), Gaps = 53/256 (20%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
           S + LK+    L  +P   FS L N+ R+ ++  ++   +     L   S   L ++  +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQ-----LESHSFYNLSKVTHI 85

Query: 132 NISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
            I ++  +  I  D    L                                         
Sbjct: 86  EIRNTRNLTYIDPDALKELPL--------------------------------------- 106

Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSS-LRILNIS 248
             L+ L + +  L+   D + +        L + +N  ++ I  NAF  L +    L + 
Sbjct: 107 --LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL-VLDLSSNHLSSNHIDE 307
           +N   S+    F+  +  +    +   L  + +  F  +     +LD+S   +++  +  
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPS 222

Query: 308 TTFIGLIRLIILNLSN 323
                L  LI  N   
Sbjct: 223 KGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  105 bits (263), Expect = 3e-25
 Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 25/225 (11%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           C   ++  ++   I  IPS     P  +TL L E  +  I + +F NL  ++ + +  + 
Sbjct: 10  CHQEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 469 -IGNLSSGMLYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDINGV--F 524
            +  L S   Y L  +  + +   + +  I+    ++   L  + + +  L     +   
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGN--------LKWLDIHGNYISSLNNYYEIKDGLS 576
                   L +++N  +      +P N           L ++ N  +S+  Y    +G  
Sbjct: 127 YSTDIFFILEITDNPYM----TSIPVNAFQGLCNETLTLKLYNNGFTSVQGY--AFNGTK 180

Query: 577 IKNLDASHNRILE-ISELS---IPNSVEVLFINNNLIKSVKPHTF 617
           +  +  + N+ L  I + +   + +   +L ++   + ++     
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  104 bits (262), Expect = 4e-25
 Identities = 42/284 (14%), Positives = 99/284 (34%), Gaps = 64/284 (22%)

Query: 71  YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
           +  E+ +++   +  +P    S   + + L +   +L+        +   +   L  +  
Sbjct: 11  HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLR-------TIPSHAFSNLPNISR 59

Query: 131 LNISSSN-IKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGFAVRRASAESNSGEKIECS 188
           + +S    ++ +    F +L+ +  + +    ++  ID                      
Sbjct: 60  IYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL------------- 106

Query: 189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNAFVALSS-LRILN 246
               L+ L + +  L+   D + +        L + +N  ++ I  NAF  L +    L 
Sbjct: 107 ----LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN-HLSSNHI 305
           + +N   S+    F+                           +L  + L+ N +L+   I
Sbjct: 163 LYNNGFTSVQGYAFNGT-------------------------KLDAVYLNKNKYLTV--I 195

Query: 306 DETTFIGLIRLI-ILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           D+  F G+     +L++S   +T + +K  +    L+ L  RN 
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH---LKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  102 bits (257), Expect = 2e-24
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 39/213 (18%)

Query: 60  SSITTKSFQNIYSLEELKIS-NCKLVELPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDL 117
            +I + +F N+ ++  + +S +  L +L    F  L  +  + I NTRNL         +
Sbjct: 44  RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-------YI 96

Query: 118 VPGSLDGLRELQVLNISSSNIKSISDDVFC-SLANIQTLNLSRNS-IRDIDTLGFAVRRA 175
            P +L  L  L+ L I ++ +K   D     S      L ++ N  +  I    F     
Sbjct: 97  DPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ---- 152

Query: 176 SAESNSGEKIECSGGM--DLRILDLSHNKLRTLGDYSGITKFR--RLQNLHL-ENNEISQ 230
                         G+  +   L L +N   ++  Y+    F   +L  ++L +N  ++ 
Sbjct: 153 --------------GLCNETLTLKLYNNGFTSVQGYA----FNGTKLDAVYLNKNKYLTV 194

Query: 231 IAPNAFVAL-SSLRILNISSNHLVSLPEGLFSS 262
           I  +AF  + S   +L++S   + +LP      
Sbjct: 195 IDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 95.5 bits (238), Expect = 6e-22
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
               C C  +++        + + I  +P  +P     + L     +TIP+H F    N+
Sbjct: 4   SSPPCECHQEED-----FRVTCKDIQRIP-SLPPSTQTLKLIETHLRTIPSHAFSNLPNI 57

Query: 804 LSLYV--------------------------NNSQIEVILNQTFNGLSSLQVLHLENNLI 837
             +YV                          N   +  I       L  L+ L + N  +
Sbjct: 58  SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGL 117

Query: 838 THF-YGYEFDNLEKLSELYLQEN-RIEYIANGTFNALIS-LQVLQLDGNRLKSFRAFDLN 894
             F    +  + +    L + +N  +  I    F  L +    L+L  N   S + +  N
Sbjct: 118 KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177

Query: 895 TNSMLRKVYLGNNP 908
             + L  VYL  N 
Sbjct: 178 -GTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.6 bits (215), Expect = 7e-19
 Identities = 32/191 (16%), Positives = 67/191 (35%), Gaps = 31/191 (16%)

Query: 726 CFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLD 785
               C C + +                           + + I  + P +P     + L 
Sbjct: 4   SSPPCECHQEE-----------------------DFRVTCKDIQRI-PSLPPSTQTLKLI 39

Query: 786 GNTFKTIPNHVFIGRKNMLSLYVN-NSQIEVILNQTFNGLSSLQVLHLENN-LITHFYGY 843
               +TIP+H F    N+  +YV+ +  ++ + + +F  LS +  + + N   +T+    
Sbjct: 40  ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 844 EFDNLEKLSELYLQENRIEYIANGTF-NALISLQVLQL-DGNRLKSF--RAFDLNTNSML 899
               L  L  L +    ++   + T   +     +L++ D   + S    AF     +  
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ-GLCNET 158

Query: 900 RKVYLGNNPFS 910
             + L NN F+
Sbjct: 159 LTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 29/171 (16%), Positives = 51/171 (29%), Gaps = 32/171 (18%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVF-SGLRNLKRLTINTRNLQWDKSKKLDLV 118
           + I   + + +  L+ L I N  L   P             L I            +  +
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-------YMTSI 146

Query: 119 P-GSLDGLR-ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-SIRDIDTLGFAVRRA 175
           P  +  GL  E   L + ++   S+    F +   +  + L++N  +  ID   F     
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAF----G 201

Query: 176 SAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN 226
              S               +LD+S   +  L           L+ L   N 
Sbjct: 202 GVYSG------------PSLLDVSQTSVTALPSKG----LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 766 QQISTVPPRIPMDAT---HVYLDGNTFKTIPNHVFIGRKNMLSL--YVNNSQIEVILNQT 820
           + ++ + P    +      + +     K  P+   +   ++  +    +N  +  I    
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 821 FNGLSS-LQVLHLENNLITHFYGYEFDNLEKLSELYLQENR-IEYIANGTFNALIS-LQV 877
           F GL +    L L NN  T   GY F+   KL  +YL +N+ +  I    F  + S   +
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 878 LQLDGNRLKS 887
           L +    + +
Sbjct: 210 LDVSQTSVTA 219

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 784 LDGNTFKTIPNHVFIGRKNML-SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
            D     +IP + F G  N   +L + N+    +    FNG     V   +N  +T    
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 843 YEFDNL-EKLSELYLQENRIEYIANGTFNALISLQVL 878
             F  +    S L + +  +  + +     L  L   
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  142 bits (360), Expect = 7e-38
 Identities = 61/234 (26%), Positives = 96/234 (41%), Gaps = 32/234 (13%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
           C+       +D S  KL  +   S I      + L L++N++S +   AF  L+ LR+L 
Sbjct: 14  CNNN--KNSVDCSSKKLTAIP--SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLY 67

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHID 306
           ++ N L +LP                         G+F +L+ L  L ++ N L +  + 
Sbjct: 68  LNDNKLQTLPA------------------------GIFKELKNLETLWVTDNKLQA--LP 101

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
              F  L+ L  L L  N+L  +  + F  L  L  L L  N +  +    F  L +L  
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           + L  N++  +    F+ L  L  L L NN L  +   AF +   LK L L  N
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  140 bits (355), Expect = 4e-37
 Identities = 62/243 (25%), Positives = 103/243 (42%), Gaps = 28/243 (11%)

Query: 225 NNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF 284
           N  + +         ++   ++ SS  L ++P  + +   D  ++  Q N L  L    F
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPA---DTKKLDLQSNKLSSLPSKAF 57

Query: 285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLD 344
           H+L +L +L L+ N L +  +    F  L  L  L +++N+L  +    F  LV L  L 
Sbjct: 58  HRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
           L  N +  +    F SL  L  + L  N +  +   +F+ L  L +L L NN L  +   
Sbjct: 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
           AF                         L  LKTL L  NQ+ ++  G+F +L++L  L+L
Sbjct: 176 AFDK-----------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 465 VDN 467
            +N
Sbjct: 213 QEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  129 bits (326), Expect = 3e-33
 Identities = 57/240 (23%), Positives = 100/240 (41%), Gaps = 52/240 (21%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
               CSC    N N N VDCS ++++ +P  IP D   + L  N   ++P+  F     +
Sbjct: 8   DGGVCSC----NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKL 63

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             LY+N+++++ +    F  L +L+ L + +N +       FD L  L+EL L  N+++ 
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 864 IANGTFNALISLQVLQLDGNRLKS-----FR---------------------AFD----- 892
           +    F++L  L  L L  N L+S     F                      AFD     
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 893 ----LNTNSM-------------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
               L+ N +             L+ + L  NP+ C+C  +  +  W+   +++   G+D
Sbjct: 184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVD 243

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  128 bits (323), Expect = 7e-33
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 5/218 (2%)

Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
           N  L + D            +D  +  +  I  N       L    L  N++  + +  F
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKL---DLQSNKLSSLPSKAF 57

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLG 441
           + L  L  L L++N L  + +  FK    L+ L ++ N +  +P     +L  L  L L 
Sbjct: 58  HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
            NQ+  +    F +L +LT L L  N + +L  G+  +L SL+ L L  N++ ++  G F
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177

Query: 502 EKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
           +K   L  ++LD+N L  +  G F  L +L  L L EN
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  110 bits (278), Expect = 6e-27
 Identities = 72/306 (23%), Positives = 116/306 (37%), Gaps = 83/306 (27%)

Query: 409 CS-ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           C+     +D SS  +  IPS +      K LDL  N++S + + +F  L +L  L L DN
Sbjct: 14  CNNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
            +  L +G+  EL +LE L ++ NK+  + IG F++   LA +RLD N L  +   VF  
Sbjct: 72  KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131

Query: 527 LAQLLWLNLSENHLVWFDYAMVP-------GNLKWLDIHGNYISSLNNYYEIKDGLSIKN 579
           L +L +L+L  N L       +P        +LK L ++ N +  +       D L+   
Sbjct: 132 LTKLTYLSLGYNEL-----QSLPKGVFDKLTSLKELRLYNNQLKRVPE--GAFDKLT--- 181

Query: 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLT 639
                              ++ L ++NN +K V P   FD                    
Sbjct: 182 ------------------ELKTLKLDNNQLKRV-PEGAFDS------------------- 203

Query: 640 ALRLKPVPQNKTLPEFYLGGNPFDCDCSM-----DWLPIINNNTSPSMERQYPKIMDLDN 694
                     + L    L  NP+DC C+       W   +       +         +D 
Sbjct: 204 ---------LEKLKMLQLQENPWDCTCNGIIYMAKW---LKKKADEGLG-------GVDT 244

Query: 695 VVCKMT 700
             C+  
Sbjct: 245 AGCEKG 250

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  105 bits (263), Expect = 7e-25
 Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 75/258 (29%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           K+LT        +T+ L    +K   L   +   L +L++L ++ + ++++   +F  L 
Sbjct: 26  KKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS 210
           N++TL ++ N ++ +                                         G + 
Sbjct: 86  NLETLWVTDNKLQALPI---------------------------------------GVFD 106

Query: 211 GITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY 270
            +     L  L L+ N++  + P  F +L+ L  L++  N L SLP+             
Sbjct: 107 QLVN---LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK------------- 150

Query: 271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330
                      G+F KL  L  L L +N L    + E  F  L  L  L L NN+L R+ 
Sbjct: 151 -----------GVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVP 197

Query: 331 AKTFKDLVFLQRLDLRNN 348
              F  L  L+ L L+ N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 95.8 bits (239), Expect = 9e-22
 Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 49/215 (22%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           SS+ +K+F  +  L  L +++ KL  LP  +F  L+NL+ L +    LQ        L  
Sbjct: 50  SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-------ALPI 102

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES 179
           G  D L  L  L +  + +KS+   VF SL  +  L+L  N ++ +    F         
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF--------- 153

Query: 180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL 239
                                             K   L+ L L NN++ ++   AF  L
Sbjct: 154 ---------------------------------DKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN 274
           + L+ L + +N L  +PEG F S   +  +  Q+N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 12/136 (8%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
            S+  + F ++  L  L +   +L  LP  VF  L +LK L +    L+        +  
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR-------VPE 174

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRR 174
           G+ D L EL+ L + ++ +K + +  F SL  ++ L L  N    +   I  +  +  ++
Sbjct: 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234

Query: 175 ASAESNSGEKIECSGG 190
           A       +   C  G
Sbjct: 235 ADEGLGGVDTAGCEKG 250

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  144 bits (364), Expect = 2e-37
 Identities = 58/250 (23%), Positives = 98/250 (39%), Gaps = 40/250 (16%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI-PNHVFIGRK 801
           +CP NC C       +N++ CS+QQ+  VP  +P     + L  N    +          
Sbjct: 11  SCPANCLC------ASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLT 64

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
           N+ SL ++++ +  I ++ F  + +L+ L L +N +     + F +L+ L  L L  N I
Sbjct: 65  NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI 124

Query: 862 EYIANGTFNALISLQVLQLDGNRLKSF--RAF------------DLNTNSM--------- 898
             +    F  +  LQ L L  N++  F                 DL++N +         
Sbjct: 125 VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

Query: 899 ------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD-ISCVIDESSPPIRKEI 951
                    +YL NNP  C C   Q    W     + V D  + + C+    S  +    
Sbjct: 185 KLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCM---HSKKLHNIF 241

Query: 952 DLNSTTCTEY 961
            L+   C+EY
Sbjct: 242 SLDFFNCSEY 251

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  129 bits (326), Expect = 2e-32
 Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 11/217 (5%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
           +LDLS N+LS     E T   L  L  L LS+N L  I ++ F  +  L+ LDL +N + 
Sbjct: 43  LLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS- 410
            +++  F  L  L  + L  N I  +  + F  +  L KL LS N +     +  K+ + 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 411 --ALKELDLSSNAIVEIP-SALSELPFLK--TLDLGENQI----SKIENGSFKNLQQLTD 461
              L  LDLSSN + ++P + L +LP      L L  N +       +  S    +QL+ 
Sbjct: 162 LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSS 221

Query: 462 LRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
           +     ++  + S  L+ + SL+  N S+ K    E 
Sbjct: 222 VMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEA 258

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  126 bits (319), Expect = 1e-31
 Identities = 65/248 (26%), Positives = 100/248 (40%), Gaps = 37/248 (14%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
              +LDLSHN L  L      T+   L +L L +N ++ I+  AFV + +LR L++SSNH
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L +L E                         LF  L+ L VL L +NH+    +D   F 
Sbjct: 100 LHTLDE------------------------FLFSDLQALEVLLLYNNHIVV--VDRNAFE 133

Query: 312 GLIRLIILNLSNNELTRIDAKTFKD---LVFLQRLDLRNNSIGYIEDNAFLSLYNL--HT 366
            + +L  L LS N+++R   +  KD   L  L  LDL +N +  +       L     + 
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN-----IDSKAFKNCSALKELDLSSNA 421
           +YL  N +      L+          LS+ +        + SK   N  +L   + S   
Sbjct: 194 LYLHNNPL-ECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

Query: 422 IVEIPSAL 429
                + L
Sbjct: 253 ESAWEAHL 260

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  126 bits (317), Expect = 2e-31
 Identities = 50/188 (26%), Positives = 71/188 (37%), Gaps = 32/188 (17%)

Query: 215 FRRLQNLHLENNEISQIAPN-AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
                 L L +N +S++        L++L  L +S NHL  +    F             
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV------------ 85

Query: 274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT 333
                        +  L  LDLSSNHL +  +DE  F  L  L +L L NN +  +D   
Sbjct: 86  ------------PVPNLRYLDLSSNHLHT--LDEFLFSDLQALEVLLLYNNHIVVVDRNA 131

Query: 334 FKDLVFLQRLDLRNNSIGYIEDNAFL---SLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390
           F+D+  LQ+L L  N I             L  L  + LS N++  +       L    K
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

Query: 391 --LTLSNN 396
             L L NN
Sbjct: 192 NGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  114 bits (288), Expect = 2e-27
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 10/159 (6%)

Query: 412 LKELDLSSNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
              LDLS N +  + +    + L  L +L L  N ++ I + +F  +  L  L L  N++
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF---T 525
             L   +  +L +LEVL L  N I  ++   FE   +L  + L  N ++     +     
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPG----NLKWLDIHGN 560
            L +L+ L+LS N L       +          L +H N
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  112 bits (282), Expect = 9e-27
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 10/164 (6%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVDN 467
           C++   L  S   +  +P +L    +   LDL  N +S++    +   L  L  L L  N
Sbjct: 18  CAS-NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTY 526
           ++  +SS     +P+L  L+LS N +H ++   F   + L  + L +N +  +    F  
Sbjct: 75  HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134

Query: 527 LAQLLWLNLSENHLVW-----FDYAMVPGNLKWLDIHGNYISSL 565
           +AQL  L LS+N +                L  LD+  N +  L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.1 bits (221), Expect = 7e-19
 Identities = 42/199 (21%), Positives = 79/199 (39%), Gaps = 36/199 (18%)

Query: 36  NLSFVPTDLITKLNIDCDATVL-LDS-SITT----KSFQNIYSLEELKISNCKLVELPVD 89
            L  VP       ++     +L L   +++      +   + +L  L +S+  L  +  +
Sbjct: 29  QLPNVPQ------SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE 82

Query: 90  VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSL 149
            F  + NL+ L +++ +L         L       L+ L+VL + +++I  +  + F  +
Sbjct: 83  AFVPVPNLRYLDLSSNHLH-------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

Query: 150 ANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL--G 207
           A +Q L LS+N I               +              L +LDLS NKL+ L   
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPK--------------LMLLDLSSNKLKKLPLT 181

Query: 208 DYSGITKFRRLQNLHLENN 226
           D   +  + +   L+L NN
Sbjct: 182 DLQKLPAWVK-NGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 33/198 (16%)

Query: 481 PSLEVLNLSKNKIHQIEIGT-FEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSEN 538
               +L+LS N + ++       +   L ++ L  N L  I+   F  +  L +L+LS N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 539 HLVWFDYAMVPG--NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
           HL   D  +      L+ L ++ N+I  ++      + ++                    
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIVVVDR--NAFEDMA-------------------- 136

Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLAR---VDIYANDITKLDLTALRLKPVPQNKTLP 653
             ++ L+++ N I         D + L +   +D+ +N + KL LT L+  P      L 
Sbjct: 137 -QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL- 194

Query: 654 EFYLGGNPFDCDCSMDWL 671
             YL  NP +CDC +  L
Sbjct: 195 --YLHNNPLECDCKLYQL 210

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  148 bits (374), Expect = 6e-37
 Identities = 70/367 (19%), Positives = 124/367 (33%), Gaps = 63/367 (17%)

Query: 147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL 206
           C       LN+  + +  +                           +  L +  N L +L
Sbjct: 37  CLNNGNAVLNVGESGLTTLPD--------------------CLPAHITTLVIPDNNLTSL 76

Query: 207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI 266
                      L+ L +  N+++ + P     L  L I +    HL +LP GL       
Sbjct: 77  PAL-----PPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGL------- 123

Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL 326
            +++   N L  L          L  L +S N L+S  +          L  L   NN+L
Sbjct: 124 CKLWIFGNQLTSLPVL----PPGLQELSVSDNQLAS--LPA----LPSELCKLWAYNNQL 173

Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
           T +          LQ L + +N +  +          L+ ++   NR+  + A       
Sbjct: 174 TSLPM----LPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPALPSG--- 222

Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
            L +L +S N L ++        S LKEL +S N +  +P        L +L +  NQ++
Sbjct: 223 -LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLP---MLPSGLLSLSVYRNQLT 274

Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
           ++   S  +L   T + L  N +   +   L E+ S    +    +          + + 
Sbjct: 275 RLPE-SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 507 LAAIRLD 513
           L     D
Sbjct: 334 LHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  144 bits (364), Expect = 1e-35
 Identities = 71/391 (18%), Positives = 127/391 (32%), Gaps = 65/391 (16%)

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
                VLN+  S + ++ D +    A+I TL +  N++  +  L                
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPALPP-------------- 81

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
                  +LR L++S N+L +L           L         +  +        S L  
Sbjct: 82  -------ELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPAL-------PSGLCK 125

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           L I  N L SLP         + E+    N L  L         +L  L   +N L+S  
Sbjct: 126 LWIFGNQLTSLPVLPPG----LQELSVSDNQLASLPALP----SELCKLWAYNNQLTS-- 175

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
           +          L  L++S+N+L  +          L +L   NN +  +          L
Sbjct: 176 LPML----PSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGL 223

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
             + +S NR+  +          L +L +S N L ++        S L  L +  N +  
Sbjct: 224 KELIVSGNRLTSLPVLPSE----LKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR 275

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLE 484
           +P +L  L    T++L  N +S+    + + +                 +    E  +L 
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
               + + +     G      R      + N
Sbjct: 336 --LAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  134 bits (338), Expect = 2e-32
 Identities = 69/408 (16%), Positives = 135/408 (33%), Gaps = 92/408 (22%)

Query: 204 RTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVAL-SSLRILNISSNHLVSLPEGLFSS 262
               +Y  +    R      E+   + +       L +   +LN+  + L +LP+ L + 
Sbjct: 3   VDPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH 62

Query: 263 CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS 322
              I+ +    N+L  L         +L  L++S N L+S  +      GL+ L I +  
Sbjct: 63  ---ITTLVIPDNNLTSLPALP----PELRTLEVSGNQLTS--LPVL-PPGLLELSIFSNP 112

Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
              L  +          L +L +  N +  +          L  + +S+N++  + A   
Sbjct: 113 LTHLPAL-------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPALPS 161

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGE 442
                L KL   NN L ++        S L+EL +S N +  +P+  SEL     L    
Sbjct: 162 E----LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTLPSEL---YKLWAYN 210

Query: 443 NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFE 502
           N+++ +          L +L +  N + +L          L+ L +S N++         
Sbjct: 211 NRLTSLPA----LPSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRL--------- 253

Query: 503 KNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYI 562
                                 T L  L                     L  L ++ N +
Sbjct: 254 ----------------------TSLPMLP------------------SGLLSLSVYRNQL 273

Query: 563 SSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
           + L     +    S   ++   N + E +  ++         +  +I+
Sbjct: 274 TRLPE--SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIR 319

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.3 bits (216), Expect = 1e-17
 Identities = 53/320 (16%), Positives = 113/320 (35%), Gaps = 39/320 (12%)

Query: 36  NLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLR 95
           +L  +P+ L  KL I  +    L              L+EL +S+ +L  LP    +   
Sbjct: 115 HLPALPSGL-CKLWIFGNQLTSLPVLPP--------GLQELSVSDNQLASLP----ALPS 161

Query: 96  NLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTL 155
            L +L     N Q      L  +P    GL+E   L++S + + S+        + +  L
Sbjct: 162 ELCKLWAY--NNQ------LTSLPMLPSGLQE---LSVSDNQLASLPT----LPSELYKL 206

Query: 156 NLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF 215
               N +  +  L   ++      N    +      +L+ L +S N+L +L         
Sbjct: 207 WAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS-ELKELMVSGNRLTSLPMLPS---- 261

Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
             L +L +  N+++++ P + + LSS   +N+  N L         + R+I+        
Sbjct: 262 -GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLSERT---LQALREITSAPGYSGP 316

Query: 276 LVELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF 334
           ++           +   L L++ + L      E        +     + +  +    +  
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

Query: 335 KDLVFLQRLDLRNNSIGYIE 354
           +   F++    +     ++ 
Sbjct: 377 ETENFIKDAGFKAQISSWLA 396

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 4e-10
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 23/166 (13%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
              V++  E  ++T+P  +P   T + +  N   ++P         + +L V+ +Q+   
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLT-S 95

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
           L     GL  L +       +             L +L++  N++  +          LQ
Sbjct: 96  LPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTSLPVL----PPGLQ 144

Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC---SCATLQEL 919
            L +  N+L S         S L K++  NN  +      + LQEL
Sbjct: 145 ELSVSDNQLASL----PALPSELCKLWAYNNQLTSLPMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 55.7 bits (134), Expect = 8e-08
 Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 14/167 (8%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
             S+ Q++++P     +   ++   N   ++P         +  L V+ +++  +     
Sbjct: 187 SVSDNQLASLPTLPS-ELYKLWAYNNRLTSLPALP----SGLKELIVSGNRLTSL----P 237

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
              S L+ L +  N +T            L  L +  N++  +     + L S   + L+
Sbjct: 238 VLPSELKELMVSGNRLTSLP----MLPSGLLSLSVYRNQLTRLPESLIH-LSSETTVNLE 292

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSN 928
           GN L       L   +           F  + A+       +   + 
Sbjct: 293 GNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 2e-07
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 24/161 (14%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
                Q++++P   P     + +  N   ++P         +  L+  N+Q+  +     
Sbjct: 127 WIFGNQLTSLPVLPP-GLQELSVSDNQLASLPALP----SELCKLWAYNNQLTSLPML-- 179

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
              S LQ L + +N +            +L +L+   NR+  +          L+ L + 
Sbjct: 180 --PSGLQELSVSDNQLASL----PTLPSELYKLWAYNNRLTSLPAL----PSGLKELIVS 229

Query: 882 GNRLKSFRAFDLNTNSMLRKVYLGNNPFS---CSCATLQEL 919
           GNRL S         S L+++ +  N  +      + L  L
Sbjct: 230 GNRLTSLPVL----PSELKELMVSGNRLTSLPMLPSGLLSL 266

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score =  132 bits (333), Expect = 5e-35
 Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 10/198 (5%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   V+C  Q  ++VP  IP   T++ L+ N+ K++PN VF    ++
Sbjct: 1   CPSRCSC------SGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSL 54

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             LY+  ++++ + N  FN L+SL  L+L  N +       FD L +L EL L  N+++ 
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114

Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
           + +G F+ L  L+ L+L  N+LKS     FD  T+  L+ ++L +NP+ C+C  ++ L  
Sbjct: 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSE 172

Query: 922 WIIDNSNKVKDGLDISCV 939
           WI  +S  V++       
Sbjct: 173 WINKHSGVVRNSAGSVAP 190

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 43/130 (33%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
             L LE N +  +    F  L+SL  L +  N L SLP G+F+    ++ +    N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
           L  G+F KL QL  L L++N L S  + +  F  L +L  L L  N+L  +    F  L 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQS--LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148

Query: 339 FLQRLDLRNN 348
            LQ + L +N
Sbjct: 149 SLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 1/128 (0%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
             LDL  NS+  + +  F  L +L  +YL  N++  +   +FN L  L+ L LS N L +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           + +  F   + LKEL L++N +  +P     +L  LK L L +NQ+  + +G F  L  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 460 TDLRLVDN 467
             + L DN
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           CS    ++  S     +P+ +        LDL  N +  + NG F  L  LT L L  N 
Sbjct: 7   CSG-TTVECYSQGRTSVPTGIPAQ--TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK 63

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYL 527
           + +L +G+  +L SL  LNLS N++  +  G F+K  +L  + L++N L  + +GVF  L
Sbjct: 64  LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123

Query: 528 AQLLWLNLSENHL 540
            QL  L L +N L
Sbjct: 124 TQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 2/129 (1%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            LDL +N L S  +    F  L  L  L L  N+L  +    F  L  L  L+L  N + 
Sbjct: 32  YLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
            + +  F  L  L  + L+ N++  +   +F+ L  L  L L  N L ++    F   ++
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 412 LKELDLSSN 420
           L+ + L  N
Sbjct: 150 LQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 2/128 (1%)

Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
             LDL +N++  +P+    EL  L  L LG N++  + NG F  L  LT L L  N + +
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
           L +G+  +L  L+ L L+ N++  +  G F+K  +L  +RL  N L  + +GVF  L  L
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150

Query: 531 LWLNLSEN 538
            ++ L +N
Sbjct: 151 QYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 70.9 bits (174), Expect = 7e-14
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 3/133 (2%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
               LDL  N L++L +     +   L  L+L  N++  +    F  L+SL  LN+S+N 
Sbjct: 29  QTTYLDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L SLP G+F     + E+    N L  L  G+F KL QL  L L  N L S  + +  F 
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFD 145

Query: 312 GLIRLIILNLSNN 324
            L  L  + L +N
Sbjct: 146 RLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 42/172 (24%)

Query: 103 NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
            T  L  + +    L  G  D L  L  L +  + ++S+ + VF  L ++  LNLS N +
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH 222
           + +                             + D                K  +L+ L 
Sbjct: 89  QSLPN--------------------------GVFD----------------KLTQLKELA 106

Query: 223 LENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN 274
           L  N++  +    F  L+ L+ L +  N L S+P+G+F     +  I+   N
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 16/150 (10%)

Query: 16  SMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEE 75
           S +  +V C      +G  S  + +P    T L+++ ++      S+    F  + SL +
Sbjct: 6   SCSGTTVECY----SQGRTSVPTGIPAQT-TYLDLETNSL----KSLPNGVFDELTSLTQ 56

Query: 76  LKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISS 135
           L +   KL  LP  VF+ L +L  L ++T  LQ        L  G  D L +L+ L +++
Sbjct: 57  LYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-------SLPNGVFDKLTQLKELALNT 109

Query: 136 SNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           + ++S+ D VF  L  ++ L L +N ++ +
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 52/235 (22%), Positives = 76/235 (32%), Gaps = 85/235 (36%)

Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW 542
             L+L  N +  +  G F++   L  + L  N L  + NGVF  L  L +LNLS N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 543 FDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
              ++  G       LK L ++ N + SL                               
Sbjct: 90  ---SLPNGVFDKLTQLKELALNTNQLQSL------------------------------- 115

Query: 597 NSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN-----K 650
                            P   FDK + L            L L   +LK VP        
Sbjct: 116 -----------------PDGVFDKLTQL----------KDLRLYQNQLKSVPDGVFDRLT 148

Query: 651 TLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKIMDLDNVVCKMT 700
           +L   +L  NP+DC C       +W   IN +    + R     +  D+  C  +
Sbjct: 149 SLQYIWLHDNPWDCTCPGIRYLSEW---INKH--SGVVRNSAGSVAPDSAKCSGS 198

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  134 bits (338), Expect = 1e-34
 Identities = 57/255 (22%), Positives = 106/255 (41%), Gaps = 19/255 (7%)

Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL 326
           SE       + ++         + +  +L    ++    D  T   L  +  +  +N+++
Sbjct: 5   SETITVPTPIKQIF--SDDAFAETIKDNLKKKSVT----DAVTQNELNSIDQIIANNSDI 58

Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
             +     + L  + +L L  N +  I+     +L NL  ++L EN++  +++     L 
Sbjct: 59  KSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLK 112

Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
            L  L+L +N + +I+     +   L+ L L +N I +I + LS L  L TL L +NQIS
Sbjct: 113 KLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 169

Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
            I       L +L +L L  N+I +L +  L  L +L+VL L   +     I        
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 507 LAAIRLDSNFLTDIN 521
              ++     L    
Sbjct: 226 PNTVKNTDGSLVTPE 240

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  131 bits (332), Expect = 6e-34
 Identities = 61/297 (20%), Positives = 108/297 (36%), Gaps = 21/297 (7%)

Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
                   I QI  +   A +     N+    +        +    I +I A  + +  +
Sbjct: 6   ETITVPTPIKQIFSDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV 61

Query: 280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF 339
                  L  +  L L+ N L+    D      L  L  L L  N++  + +   KDL  
Sbjct: 62  QG--IQYLPNVTKLFLNGNKLT----DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK 113

Query: 340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
           L+ L L +N I  I     + L  L ++YL  N+I  IT    + L  L  L+L +N + 
Sbjct: 114 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           +I        + L+ L LS N I ++  AL+ L  L  L+L   +          NL   
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
             ++  D ++       + +    E  N+  +        +F   + +   +  + F
Sbjct: 227 NTVKNTDGSLVTPEI--ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 281

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  128 bits (323), Expect = 9e-33
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 19/271 (7%)

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
                I  I  +   +        L +  +        N L  + ++  +N+ + ++   
Sbjct: 9   TVPTPIKQIFSDDAFA--ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-- 62

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
             +    + +L L+ N + +I   L+ L  L  L L EN++  + +   K+L++L  L L
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
             N I +++   L  LP LE L L  NKI  I      +  +L  + L+ N ++DI    
Sbjct: 120 EHNGISDING--LVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP-L 174

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYE--IKDGLSIKNLDA 582
             L +L  L LS+NH+          NL  L++      +    ++  +    ++KN D 
Sbjct: 175 AGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG 234

Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVK 613
           S   ++    +S     E   +  +L +   
Sbjct: 235 S---LVTPEIISDDGDYEKPNVKWHLPEFTN 262

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  117 bits (294), Expect = 7e-29
 Identities = 51/305 (16%), Positives = 102/305 (33%), Gaps = 36/305 (11%)

Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
            D   E    N+   ++          L +I  +  + + I+ +  + +           
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN-------- 69

Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
                      +  L L+ NKL    D   +   + L  L L+ N++  ++      L  
Sbjct: 70  -----------VTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK 113

Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
           L+ L++  N +  +          +  +Y   N + +++     +L +L  L L  N +S
Sbjct: 114 LKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
               D     GL +L  L LS N ++ + A     L  L  L+L +        N   +L
Sbjct: 170 ----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 223

Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA 421
              +T+  ++  +        +G Y    +        N  S  F     + +     + 
Sbjct: 224 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 283

Query: 422 IVEIP 426
            V  P
Sbjct: 284 RVTQP 288

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  114 bits (288), Expect = 5e-28
 Identities = 45/263 (17%), Positives = 100/263 (38%), Gaps = 37/263 (14%)

Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
           + S+       +  I S      +   + +L   ++ +     +EL  +  +    + I 
Sbjct: 3   LGSETITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIK 59

Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
            ++    + L  +T L L  N + ++    L  L +L  L L +NK+  +   + +  K+
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKK 113

Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
           L ++ L+ N ++DING    L  L                     L+ L +  N I+ + 
Sbjct: 114 LKSLSLEHNGISDING----LVHL-------------------PQLESLYLGNNKITDIT 150

Query: 567 NYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARV 626
               +     +  L    N+I +I  L+    ++ L+++ N I  ++        NL  +
Sbjct: 151 V---LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 205

Query: 627 DIYANDITKLDLTALRLKPVPQN 649
           ++++ +     +       VP  
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNT 228

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 42/179 (23%), Positives = 71/179 (39%), Gaps = 13/179 (7%)

Query: 760 VVDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
            +  +  +++ + P   +     ++LD N  K + +      K + SL + ++ I  I  
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-- 127

Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
                L  L+ L+L NN IT         L KL  L L++N+I  I       L  LQ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183

Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS 937
            L  N +   RA     N  L  + L +    C    +      ++ N+ K  DG  ++
Sbjct: 184 YLSKNHISDLRALAGLKN--LDVLELFSQE--CLNKPINHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 34/174 (19%), Positives = 68/174 (39%), Gaps = 14/174 (8%)

Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
           +  ++ ++    +  +++   +  + +  K++         N+  L++N +++  I    
Sbjct: 30  NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-- 85

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
              L +L  L L+ N +         +L+KL  L L+ N I  I       L  L+ L L
Sbjct: 86  LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 141

Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWIIDNSNKVKD 932
             N++         T   L  + L +N  S     A L +LQ   +   N + D
Sbjct: 142 GNNKITDITVLSRLTK--LDTLSLEDNQISDIVPLAGLTKLQNLYLSK-NHISD 192

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 34/192 (17%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
            S +++  L+ L + +  + ++  +    L  L+ L +    +        D+    L  
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT-------DITV--LSR 154

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
           L +L  L++  + I  I       L  +Q L LS+N I D+  L                
Sbjct: 155 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRAL---------------- 196

Query: 185 IECSGGMDLRILDLSHNKLRTLGDY--SGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
              +G  +L +L+L   +         S +     ++N          I+ +      ++
Sbjct: 197 ---AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNV 253

Query: 243 RILNISSNHLVS 254
           +       + VS
Sbjct: 254 KWHLPEFTNEVS 265

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
                + I+ I +   +  +     +L+   +T       + L  + ++    + I+ + 
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 62

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS-----CSCATLQEL 919
                 L ++  L L+GN+L   +      N  L  ++L  N             L+ L
Sbjct: 63  G--IQYLPNVTKLFLNGNKLTDIKPLANLKN--LGWLFLDENKVKDLSSLKDLKKLKSL 117

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  134 bits (339), Expect = 1e-34
 Identities = 65/326 (19%), Positives = 116/326 (35%), Gaps = 63/326 (19%)

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
            L   I +    + +T     T  DL  +  L      +  IE      L NL  + L +
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKD 72

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N+I  +                             KN + + EL+LS N +  + SA++ 
Sbjct: 73  NQITDLAP--------------------------LKNLTKITELELSGNPLKNV-SAIAG 105

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           L  +KTLDL   QI+ +       L  L  L L  N I N+S   L  L +L+ L++   
Sbjct: 106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA 161

Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551
           ++  +         +L  ++ D N ++DI+     LA L                    N
Sbjct: 162 QVSDLT--PLANLSKLTTLKADDNKISDISP----LASLP-------------------N 196

Query: 552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS 611
           L  + +  N IS ++    + +  ++  +  ++  I         N V    +       
Sbjct: 197 LIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

Query: 612 VKPHTFFDKSNLARVDIYANDITKLD 637
           + P T  D    A  ++  N  + ++
Sbjct: 254 IAPATISDNGTYASPNLTWNLTSFIN 279

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  130 bits (329), Expect = 2e-33
 Identities = 50/309 (16%), Positives = 108/309 (34%), Gaps = 21/309 (6%)

Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267
                        +    + ++         L  +  L+     + ++         ++ 
Sbjct: 11  VIFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLI 66

Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
            +  + N + +L+      L ++  L+LS N L     + +   GL  +  L+L++ ++T
Sbjct: 67  GLELKDNQITDLAP--LKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQIT 120

Query: 328 RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
            +       L  LQ L L  N I  I       L NL  + +   ++  +T      L  
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
           L+ L   +N + +I      +   L E+ L +N I ++ S L+    L  + L    I+ 
Sbjct: 175 LTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITN 231

Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
                  NL     ++    +   ++   + +  +    NL+ N    I   ++  N+ +
Sbjct: 232 QPVFYNNNLVVPNVVK--GPSGAPIAPATISDNGTYASPNLTWNLTSFINNVSYTFNQSV 289

Query: 508 AAIRLDSNF 516
                   F
Sbjct: 290 TFKNTTVPF 298

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  119 bits (299), Expect = 2e-29
 Identities = 59/262 (22%), Positives = 105/262 (40%), Gaps = 37/262 (14%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
             K+    + + +  +    +   +  L      +  I   +  L  L  L+L +NQI+ 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD 77

Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
           +     KNL ++T+L L  N + N+S+  +  L S++ L+L+  +I  +          L
Sbjct: 78  LAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVT--PLAGLSNL 131

Query: 508 AAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
             + LD N +T+I+     LA L                    NL++L I    +S L  
Sbjct: 132 QVLYLDLNQITNISP----LAGLT-------------------NLQYLSIGNAQVSDLTP 168

Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVD 627
              + +   +  L A  N+I +IS L+   ++  + + NN I  V P    + SNL  V 
Sbjct: 169 ---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 628 IYANDITKLDLTALRLKPVPQN 649
           +    IT   +       VP  
Sbjct: 224 LTNQTITNQPVFYNNNLVVPNV 245

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  115 bits (291), Expect = 3e-28
 Identities = 61/335 (18%), Positives = 116/335 (34%), Gaps = 45/335 (13%)

Query: 92  SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
             L N  ++     N+        D V      L  +  L+   + + +I       L N
Sbjct: 16  PALANAIKIAAGKSNVT-------DTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNN 64

Query: 152 IQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG 211
           +  L L  N I D+  L    +                   +  L+LS N L+ +   S 
Sbjct: 65  LIGLELKDNQITDLAPLKNLTK-------------------ITELELSGNPLKNV---SA 102

Query: 212 ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA 271
           I   + ++ L L + +I+ + P     LS+L++L +  N + ++     +   ++  +  
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158

Query: 272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA 331
               + +L+      L +L  L    N +S    D +    L  LI ++L NN+++ +  
Sbjct: 159 GNAQVSDLT--PLANLSKLTTLKADDNKIS----DISPLASLPNLIEVHLKNNQISDVSP 212

Query: 332 KTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKL 391
               +   L  + L N +I         +L   + +               NG Y    L
Sbjct: 213 --LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNL 270

Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP 426
           T +    +N  S  F      K   +  +  V  P
Sbjct: 271 TWNLTSFINNVSYTFNQSVTFKNTTVPFSGTVTQP 305

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  105 bits (263), Expect = 1e-24
 Identities = 39/245 (15%), Positives = 90/245 (36%), Gaps = 20/245 (8%)

Query: 417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM 476
               AI  I      L     +  G++ ++     +  +L  +T L      +  +    
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG-- 58

Query: 477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLS 536
           +  L +L  L L  N+I  +     +   ++  + L  N L +++     L  +  L+L+
Sbjct: 59  VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLT 115

Query: 537 ENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
              +          NL+ L +  N I++++    +    +++ L   + ++ +++ L+  
Sbjct: 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTPLANL 172

Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656
           + +  L  ++N I  + P       NL  V +  N I+ +        P+     L    
Sbjct: 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-------PLANTSNLFIVT 223

Query: 657 LGGNP 661
           L    
Sbjct: 224 LTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)

Query: 761 VDCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQ 819
           ++  + QI+ + P   +   T + L GN  K +      G +++ +L + ++QI  +   
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDV--T 123

Query: 820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQ 879
              GLS+LQVL+L+ N IT+        L  L  L +   ++  +       L  L  L+
Sbjct: 124 PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 880 LDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS 910
            D N++          N  L +V+L NN  S
Sbjct: 180 ADDNKISDISPLASLPN--LIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 3e-09
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 11/134 (8%)

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
            N + +    S +      T   L  +  L      +T   G     L  L  L L++N+
Sbjct: 19  ANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQE 918
           I  +A      L  +  L+L GN LK+  A     +  ++ + L +   +     A L  
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQS--IKTLDLTSTQITDVTPLAGLSN 130

Query: 919 LQTWIIDNSNKVKD 932
           LQ   +D  N++ +
Sbjct: 131 LQVLYLDL-NQITN 143

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 28/197 (14%), Positives = 57/197 (28%), Gaps = 57/197 (28%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
                + +L+ L I N ++ +L                                   L  
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLT---------------------------------PLAN 171

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
           L +L  L    + I  IS     SL N+  ++L  N I D+  L                
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPL---------------- 213

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
              +   +L I+ L++  +     +        +    ++    + IAP       +   
Sbjct: 214 ---ANTSNLFIVTLTNQTITNQPVFYNNNL---VVPNVVKGPSGAPIAPATISDNGTYAS 267

Query: 245 LNISSNHLVSLPEGLFS 261
            N++ N    +    ++
Sbjct: 268 PNLTWNLTSFINNVSYT 284

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  133 bits (336), Expect = 2e-34
 Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 7/207 (3%)

Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
               +     ++    ++  +  +       L   +LSEN ++  +         L++L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLN 61

Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
           L    L  +          L  LDLS N +  +P     LP L  LD+  N+++ +  G+
Sbjct: 62  LDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
            + L +L +L L  N +  L  G+L   P LE L+L+ N + ++  G     + L  + L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 513 DSNFLTDI-NGVFTYLAQLLWLNLSEN 538
             N L  I  G F     L +  L  N
Sbjct: 180 QENSLYTIPKGFFG-SHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  132 bits (333), Expect = 5e-34
 Identities = 53/235 (22%), Positives = 77/235 (32%), Gaps = 34/235 (14%)

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
           E S       ++     L  L     +   +    LHL  N +   +    +  + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALP--PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
           N+    L  L                           +   L  L  LDLS N L S  +
Sbjct: 61  NLDRAELTKLQ--------------------------VDGTLPVLGTLDLSHNQLQS--L 92

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
                  L  L +L++S N LT +     + L  LQ L L+ N +  +          L 
Sbjct: 93  P-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
            + L+ N +  + A L NGL  L  L L  N L  I    F +   L    L  N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  126 bits (319), Expect = 3e-32
 Identities = 48/250 (19%), Positives = 84/250 (33%), Gaps = 57/250 (22%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           C  +         +   V+C ++ ++ +PP +P D T ++L  N   T      +    +
Sbjct: 4   CEVSKVA------SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRL 57

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
             L ++ +++  +  Q    L  L  L L +N +          L  L+ L +  NR+  
Sbjct: 58  TQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTS 114

Query: 864 IANGTFNALISLQVLQLDGNRLKS-----FR---------------------AFD----- 892
           +  G    L  LQ L L GN LK+                              +     
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 893 ----LNTNSM------------LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI 936
               L  NS+            L   +L  NP+ C+C  +   + W+ DN+  V      
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC-EILYFRRWLQDNAENVYVWKQG 233

Query: 937 SCVIDESSPP 946
             V   +S  
Sbjct: 234 VDVKAMTSNV 243

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  122 bits (307), Expect = 1e-30
 Identities = 50/238 (21%), Positives = 81/238 (34%), Gaps = 52/238 (21%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
            + L  +P  L   ++  +L++S + + + S         +  LNL R  +  +   G  
Sbjct: 19  KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL-GDYSGITKFRRLQNLHLENNEISQ 230
                                L  LDLSHN+L++L      +     L  L +  N ++ 
Sbjct: 77  PV-------------------LGTLDLSHNQLQSLPLLGQTLPA---LTVLDVSFNRLTS 114

Query: 231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL 290
           +   A   L  L+ L +  N L +LP GL +                           +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLT------------------------PTPKL 150

Query: 291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
             L L++N+L+   +      GL  L  L L  N L  I    F     L    L  N
Sbjct: 151 EKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  111 bits (280), Expect = 4e-27
 Identities = 50/274 (18%), Positives = 89/274 (32%), Gaps = 71/274 (25%)

Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
               ++  E++     +  +P  L        L L EN +      +     +LT L L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVF 524
              +  L       LP L  L+LS N++  +     +    L  + +  N LT +  G  
Sbjct: 64  RAELTKLQVDG--TLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVP-------GNLKWLDIHGNYISSLNNYYEIKDGLSI 577
             L +L  L L  N L       +P         L+ L +  N ++ L     + +GL  
Sbjct: 121 RGLGELQELYLKGNEL-----KTLPPGLLTPTPKLEKLSLANNNLTELPA--GLLNGLE- 172

Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
                               +++ L +  N + ++ P  FF                   
Sbjct: 173 --------------------NLDTLLLQENSLYTI-PKGFFG------------------ 193

Query: 638 LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL 671
                      +  LP  +L GNP+ C+C + + 
Sbjct: 194 -----------SHLLPFAFLHGNPWLCNCEILYF 216

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
            Q + +L  L +S  +L  LP+    GL  L+ L +    L+        L PG L    
Sbjct: 96  GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------TLPPGLLTPTP 148

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           +L+ L+++++N+  +   +   L N+ TL L  NS+  I
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
           +S+   + + +  L+EL +   +L  LP  + +    L++L++   NL        +L  
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-------ELPA 165

Query: 120 GSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
           G L+GL  L  L +  +++ +I    F     +    L  N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGN 205

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  131 bits (331), Expect = 3e-34
 Identities = 69/227 (30%), Positives = 98/227 (43%), Gaps = 34/227 (14%)

Query: 743 TCPK--NCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDA--------------------- 779
           TC     C+C    N     VDC  + + +VP  IP D                      
Sbjct: 3   TCETVTGCTC----NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGL 58

Query: 780 ---THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL 836
              T + LD N  +T+   VF     + +L + N+Q+  +    F+ L+ L  L+L  N 
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118

Query: 837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLN 894
           +       FD L KL EL L  N+++ I  G F+ L +LQ L L  N+L+S    AFD  
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL 178

Query: 895 TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVID 941
               L+ + L  N F CS   +  L  WI +NSNKVKDG   +    
Sbjct: 179 GK--LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHES 223

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  100 bits (252), Expect = 1e-23
 Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 17/182 (9%)

Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
           +   ++++C G            D   LDL    L TL    + G+TK   L  L+L+ N
Sbjct: 13  NEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTK---LTWLNLDYN 69

Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
           ++  ++   F  L+ L  L +++N L SLP G+F     + ++Y   N L  L  G+F +
Sbjct: 70  QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           L +L  L L++N L S  I    F  L  L  L+LS N+L  +    F  L  LQ + L 
Sbjct: 130 LTKLKELRLNTNQLQS--IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187

Query: 347 NN 348
            N
Sbjct: 188 GN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 99.8 bits (249), Expect = 3e-23
 Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           ++LDL++  +  + D  F  L  L  + L  N++  ++A +F+ L  L  L L+NN L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           +    F + + L +L L  N +  +PS     L  LK L L  NQ+  I  G+F  L  L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
             L L  N + ++  G    L  L+ + L  N
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 98.2 bits (245), Expect = 9e-23
 Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 27/176 (15%)

Query: 293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY 352
           LDL S  L++  + + TF GL +L  LNL  N+L  + A  F DL  L  L L NN +  
Sbjct: 40  LDLQSTGLAT--LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSAL 412
           +    F  L  L  +YL  N++  + + +F+ L                        + L
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL------------------------TKL 133

Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           KEL L++N +  IP+ A  +L  L+TL L  NQ+  + +G+F  L +L  + L  N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 2/151 (1%)

Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKI 448
           KL L +  L  +    F+  + L  L+L  N +  + +    +L  L TL L  NQ++ +
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 449 ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA 508
             G F +L QL  L L  N + +L SG+   L  L+ L L+ N++  I  G F+K   L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158

Query: 509 AIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
            + L +N L  + +G F  L +L  + L  N
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
           + LDL    ++ + + +F+ L +LT L L  N +  LS+G+  +L  L  L L+ N++  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97

Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVP----- 549
           + +G F+   +L  + L  N L  + +GVF  L +L  L L+ N L       +P     
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-----QSIPAGAFD 152

Query: 550 --GNLKWLDIHGNYISS 564
              NL+ L +  N + S
Sbjct: 153 KLTNLQTLSLSTNQLQS 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 78.2 bits (193), Expect = 6e-16
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 29/186 (15%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           K L         +T  L    +    L   +  GL +L  LN+  + ++++S  VF  L 
Sbjct: 24  KSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL--GD 208
            + TL L+ N +  +    F                      L  L L  N+L++L  G 
Sbjct: 84  ELGTLGLANNQLASLPLGVF-----------------DHLTQLDKLYLGGNQLKSLPSGV 126

Query: 209 YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE 268
           +  +TK   L+ L L  N++  I   AF  L++L+ L++S+N L S+P G F     +  
Sbjct: 127 FDRLTK---LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183

Query: 269 IYAQKN 274
           I    N
Sbjct: 184 ITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 44/199 (22%)

Query: 74  EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
           E+L + +  L  L    F GL  L  L ++   LQ        L  G  D L EL  L +
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------TLSAGVFDDLTELGTLGL 90

Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECS 188
           +++ + S+   VF  L  +  L L  N ++ +     D L                    
Sbjct: 91  ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------------------- 131

Query: 189 GGMDLRILDLSHNKLRTLGDYSGI-TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
               L+ L L+ N+L+++    G   K   LQ L L  N++  +   AF  L  L+ + +
Sbjct: 132 ---KLKELRLNTNQLQSIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

Query: 248 SSNHLVSLPEGLFSSCRDI 266
             N           S  +I
Sbjct: 187 FGNQ-------FDCSRCEI 198

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  139 bits (351), Expect = 3e-34
 Identities = 62/299 (20%), Positives = 112/299 (37%), Gaps = 21/299 (7%)

Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
           +      +  I QI P+   A +     N+    +        +    I +I A  + + 
Sbjct: 1   MGETITVSTPIKQIFPDD--AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL 337
            +       L  +  L L+ N L+    D      L  L  L L  N++  + +   KDL
Sbjct: 57  SVQG--IQYLPNVTKLFLNGNKLT----DIKPLTNLKNLGWLFLDENKIKDLSS--LKDL 108

Query: 338 VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
             L+ L L +N I  I     + L  L ++YL  N+I  IT    + L  L  L+L +N 
Sbjct: 109 KKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQ 164

Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
           + +I        + L+ L LS N I ++  AL+ L  L  L+L   +          NL 
Sbjct: 165 ISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNF 516
               ++  D ++      ++ +    E  N+  +        +F   + +   +  + F
Sbjct: 222 VPNTVKNTDGSLVTPE--IISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  125 bits (314), Expect = 1e-29
 Identities = 51/337 (15%), Positives = 119/337 (35%), Gaps = 41/337 (12%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
           + +    +  +  I        +   + +L   ++ +  +  +EL  +  +    + I  
Sbjct: 1   MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS 57

Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRL 507
           ++    + L  +T L L  N + ++    L  L +L  L L +NKI  +   + +  K+L
Sbjct: 58  VQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKL 111

Query: 508 AAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNN 567
            ++ L+ N ++DING    L  L                     L+ L +  N I+ +  
Sbjct: 112 KSLSLEHNGISDING----LVHL-------------------PQLESLYLGNNKITDITV 148

Query: 568 YYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVD 627
              +     +  L    N+I +I  L+    ++ L+++ N I  ++        NL  ++
Sbjct: 149 ---LSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLE 203

Query: 628 IYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP 687
           +++ +     +       VP           G+    +   D       N    +     
Sbjct: 204 LFSQECLNKPINHQSNLVVPNTVKN----TDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

Query: 688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDI 724
           ++  +      +  ++   H   ++     Y   YD+
Sbjct: 260 EVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDV 296

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  118 bits (297), Expect = 2e-27
 Identities = 54/305 (17%), Positives = 105/305 (34%), Gaps = 36/305 (11%)

Query: 122 LDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNS 181
            D   E    N+   ++          L +I  +  + + I+ +  + +           
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPN-------- 66

Query: 182 GEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS 241
                      +  L L+ NKL  +     +T  + L  L L+ N+I  ++      L  
Sbjct: 67  -----------VTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS--LKDLKK 110

Query: 242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
           L+ L++  N +  +  GL      +  +Y   N + +++     +L +L  L L  N +S
Sbjct: 111 LKSLSLEHNGISDI-NGL-VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSL 361
               D     GL +L  L LS N ++ + A     L  L  L+L +        N   +L
Sbjct: 167 ----DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNL 220

Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA 421
              +T+  ++  +        +G Y    +        N  S  F     + +     + 
Sbjct: 221 VVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

Query: 422 IVEIP 426
            V  P
Sbjct: 281 RVTQP 285

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.4 bits (164), Expect = 2e-11
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 760 VVDCSEQQISTVPPRIPM-DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILN 818
            +  +  +++ + P   + +   ++LD N  K + +      K + SL + ++ I  I  
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDI-- 124

Query: 819 QTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL 878
                L  L+ L+L NN IT         L KL  L L++N+I  I       L  LQ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180

Query: 879 QLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT---WIIDNSNKVKDGLD 935
            L  N +   RA     N  L  + L +          Q        + +    +     
Sbjct: 181 YLSKNHISDLRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

Query: 936 ISCVIDESSPPIRKEIDLNSTTCTEYYATSSVIASIMVS 974
           IS   D   P ++  +   +   +  +     I      
Sbjct: 239 ISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 7e-08
 Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
               ++ I+ I     +  +     +L+   +T       + L  + ++    + I+ + 
Sbjct: 4   TITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ 59

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWI 923
                 L ++  L L+GN+L   +      N  L  ++L  N      S   L++L++  
Sbjct: 60  G--IQYLPNVTKLFLNGNKLTDIKPLTNLKN--LGWLFLDENKIKDLSSLKDLKKLKSLS 115

Query: 924 IDNSNKVKD 932
           +++ N + D
Sbjct: 116 LEH-NGISD 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 53.2 bits (127), Expect = 4e-07
 Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 34/192 (17%)

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
           S +++  L+ L + +  + ++  +    L  L+ L      L  +K   +      L  L
Sbjct: 104 SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL-----YLGNNKITDIT----VLSRL 152

Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
            +L  L++  + I  I       L  +Q L LS+N I D+  L                 
Sbjct: 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRAL----------------- 193

Query: 186 ECSGGMDLRILDLSHNKLRTLGDY--SGITKFRRLQNLHLENNEISQIAPNAFVALSSLR 243
             +G  +L +L+L   +         S +     ++N          I+ +      +++
Sbjct: 194 --AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

Query: 244 ILNISSNHLVSL 255
                  + VS 
Sbjct: 252 WHLPEFTNEVSF 263

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score =  124 bits (313), Expect = 2e-32
 Identities = 53/190 (27%), Positives = 77/190 (40%), Gaps = 36/190 (18%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN 802
            CP  C+C         VV CS + +  +P  IP D T +YLDGN F  +P         
Sbjct: 3   RCPTECTC------LDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK-------- 48

Query: 803 MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE 862
                              +    L ++ L NN I+      F N+ +L  L L  NR+ 
Sbjct: 49  -----------------ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 863 YIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQ 920
            I   TF+ L SL++L L GN +      AF+  +   L  + +G NP  C C  +Q L 
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHLAIGANPLYCDC-NMQWLS 148

Query: 921 TWIIDNSNKV 930
            W+     + 
Sbjct: 149 DWVKSEYKEP 158

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 81.6 bits (202), Expect = 1e-17
 Identities = 33/103 (32%), Positives = 47/103 (45%)

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
            EL L  N    +P  LS    L  +DL  N+IS + N SF N+ QL  L L  N +  +
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
                  L SL +L+L  N I  +  G F     L+ + + +N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 74.3 bits (183), Expect = 4e-15
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 3/106 (2%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
             L+L+ N+ + + P        L ++++S+N + +L    FS+   +  +    N L  
Sbjct: 34  TELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNN 324
           +    F  L+ L +L L  N +S   + E  F  L  L  L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 1/103 (0%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
            L L  N+ T +  K   +   L  +DL NN I  + + +F ++  L T+ LS NR+  I
Sbjct: 35  ELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
               F+GL  L  L+L  N +  +   AF + SAL  L + +N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 24/127 (18%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
             L L  N    +      +  +L  I LS NRI  ++   F+ +  L  L LS N L  
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
           I  + F                         L  L+ L L  N IS +  G+F +L  L+
Sbjct: 93  IPPRTF-----------------------DGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129

Query: 461 DLRLVDN 467
            L +  N
Sbjct: 130 HLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 192 DLRILDLSHNKLRTL-GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
           D+  L L  N+   +  + S       L  + L NN IS ++  +F  ++ L  L +S N
Sbjct: 32  DVTELYLDGNQFTLVPKELSNYKH---LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88

Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
            L  +P   F   + +  +    N +  +  G F+ L  L  L + +N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            L L  N  +              L +++LSNN ++ +  ++F ++  L  L L  N + 
Sbjct: 35  ELYLDGNQFTLVP---KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
            I    F  L +L  + L  N I  +    FN L  LS L +  N
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%)

Query: 37  LSFVPTDLITKLNIDCDATVL-LDS-SITT--KSFQNIYSLEELKISNCKLVELPVDVFS 92
           L  +P        I  D T L LD    T   K   N   L  + +SN ++  L    FS
Sbjct: 22  LKVLPK------GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 93  GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANI 152
            +  L  L ++   L+        + P + DGL+ L++L++  ++I  + +  F  L+ +
Sbjct: 76  NMTQLLTLILSYNRLR-------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128

Query: 153 QTLNLSRN 160
             L +  N
Sbjct: 129 SHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 41/239 (17%), Positives = 63/239 (26%), Gaps = 93/239 (38%)

Query: 504 NKRLAAI-----------RLDSNFLTDINGVFTYLAQLLWLNLSENHLVW-----FDYAM 547
           NK L  +            LD N  T +    +    L  ++LS N +       F   M
Sbjct: 19  NKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NM 77

Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
               L  L +  N +  +       DGL                      S+ +L ++ N
Sbjct: 78  T--QLLTLILSYNRLRCIPP--RTFDGL---------------------KSLRLLSLHGN 112

Query: 608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCS 667
            I  V P   F+  +L                            L    +G NP  CDC+
Sbjct: 113 DISVV-PEGAFN--DL--------------------------SALSHLAIGANPLYCDCN 143

Query: 668 MDWLP--IINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPAS---EAAPSQYLCP 721
           M WL   + +    P                C      G   +           ++ C 
Sbjct: 144 MQWLSDWVKSEYKEP------------GIARCA-----GPGEMADKLLLTTPSKKFTCA 185

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 42/144 (29%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           K L         +   L  D   +  LVP  L   + L ++++S++ I ++S+  F ++ 
Sbjct: 20  KGLKVLPKGIPRDVTELYLD-GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
            + TL LS N +R I     D L                        LR+L L  N +  
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLK----------------------SLRLLSLHGNDISV 116

Query: 206 LGDYSGITKFRRLQNL---HLENN 226
           + +  G   F  L  L    +  N
Sbjct: 117 VPE--GA--FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
           T+L L  N    L    L     L +++LS N+I  +   +F    +L  + L  N L  
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92

Query: 520 I-NGVFTYLAQLLWLNLSENHL 540
           I    F  L  L  L+L  N +
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 74  EELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNI 133
            EL +   +   +P    S  ++L  + ++   +         L   S   + +L  L +
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRIS-------TLSNQSFSNMTQLLTLIL 85

Query: 134 SSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           S + ++ I    F  L +++ L+L  N I  +
Sbjct: 86  SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score =  124 bits (313), Expect = 5e-32
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 15/218 (6%)

Query: 728 ALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGN 787
           A+ H     +      CP  CSC      +   VDC  ++ ++VP  IP +A  +YL  N
Sbjct: 1   AMVHHHHHHSA----ACPSQCSC------SGTTVDCRSKRHASVPAGIPTNAQILYLHDN 50

Query: 788 TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDN 847
               +   VF    N+  LY+ ++Q+  +    F+ L+ L VL L  N +T      FD 
Sbjct: 51  QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110

Query: 848 LEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLG 905
           L  L EL++  N++  +  G    L  L  L LD N+LKS    AFD  ++  L   YL 
Sbjct: 111 LVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSS--LTHAYLF 167

Query: 906 NNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
            NP+ C C  +  L+ W+ D+++        +    +S
Sbjct: 168 GNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDS 205

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
           Q L+L +N+I+++ P  F +L +L+ L + SN L +LP G+F S   ++ +    N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSS--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD 336
           L   +F +L  L  L +  N L+     I+      L  L  L L  N+L  I    F  
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIER-----LTHLTHLALDQNQLKSIPHGAFDR 157

Query: 337 LVFLQRLDLRNN 348
           L  L    L  N
Sbjct: 158 LSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 82.1 bits (203), Expect = 2e-17
 Identities = 44/127 (34%), Positives = 62/127 (48%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           Q L L +N I  +E   F SL NL  +YL  N++  +   +F+ L  L+ L L  N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
           + S  F     LKEL +  N + E+P  +  L  L  L L +NQ+  I +G+F  L  LT
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 461 DLRLVDN 467
              L  N
Sbjct: 163 HAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 3/129 (2%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
           +L L  N ++   ++   F  LI L  L L +N+L  +    F  L  L  LDL  N + 
Sbjct: 44  ILYLHDNQITK--LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA 411
            +    F  L +L  +++  N++  +       L  L+ L L  N L +I   AF   S+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 412 LKELDLSSN 420
           L    L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 34/105 (32%), Positives = 53/105 (50%)

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
           + L L +NQI+K+E G F +L  L +L L  N +G L  G+   L  L VL+L  N++  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
           +    F++   L  + +  N LT++      L  L  L L +N L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 3/128 (2%)

Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
           + L L  N I ++       L  LK L LG NQ+  +  G F +L QLT L L  N +  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQL 530
           L S +   L  L+ L +  NK+ ++  G  E+   L  + LD N L  I +G F  L+ L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 531 LWLNLSEN 538
               L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
           + +IL L  N++  L  G +  +     L+ L+L +N++  +    F +L+ L +L++ +
Sbjct: 41  NAQILYLHDNQITKLEPGVFDSLIN---LKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETT 309
           N L  LP  +F     + E++   N L EL RG   +L  L  L L  N L S  I    
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALDQNQLKS--IPHGA 154

Query: 310 FIGLIRLIILNLSNN 324
           F  L  L    L  N
Sbjct: 155 FDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 60/251 (23%), Positives = 96/251 (38%), Gaps = 77/251 (30%)

Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVW 542
           ++L L  N+I ++E G F+    L  + L SN L  +  GVF  L QL  L+L  N L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 543 FDYAMVPG------NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP 596
               +         +LK L +  N ++ L       + L+                    
Sbjct: 102 ---VLPSAVFDRLVHLKELFMCCNKLTELPRGI---ERLT-------------------- 135

Query: 597 NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY 656
             +  L ++ N +KS+ PH  FD   L                           +L   Y
Sbjct: 136 -HLTHLALDQNQLKSI-PHGAFD--RL--------------------------SSLTHAY 165

Query: 657 LGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPA- 710
           L GNP+DC+C       +W   + ++TS +M      + D D+  C    +  +T + A 
Sbjct: 166 LFGNPWDCECRDIMYLRNW---VADHTSIAMRWDGKAVNDPDSAKC----AGTNTPVRAV 218

Query: 711 SEAAPSQYLCP 721
           +EA+ S   CP
Sbjct: 219 TEASTSPSKCP 229

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 36/165 (21%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           KR          N + L    ++   L PG  D L  L+ L + S+ + ++   VF SL 
Sbjct: 29  KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88

Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
            +  L+L  N +  +     D L                        L+ L +  NKL  
Sbjct: 89  QLTVLDLGTNQLTVLPSAVFDRLV----------------------HLKELFMCCNKLTE 126

Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
           L    GI +   L +L L+ N++  I   AF  LSSL    +  N
Sbjct: 127 LPR--GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 28/159 (17%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQ------WDKSK 113
           + +    F ++ +L+EL + + +L  LPV VF  L  L  L + T  L       +D+  
Sbjct: 53  TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112

Query: 114 KLDL----------VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN--- 160
            L            +P  ++ L  L  L +  + +KSI    F  L+++    L  N   
Sbjct: 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172

Query: 161 -SIRDIDTL-------GFAVRRASAESNSG-EKIECSGG 190
              RDI  L            R   ++ +  +  +C+G 
Sbjct: 173 CECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  124 bits (313), Expect = 5e-30
 Identities = 86/474 (18%), Positives = 161/474 (33%), Gaps = 93/474 (19%)

Query: 126 RELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVRRASA-ESN 180
            ++Q L+I    +   SD  +  L       Q + L    + +      +    SA   N
Sbjct: 3   LDIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS----SALRVN 55

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF--------RRLQNLHLENNEIS--- 229
                       L  L+L  N+L   GD  G+            ++Q L L+N  ++   
Sbjct: 56  P----------ALAELNLRSNEL---GD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG 101

Query: 230 -QIAPNAFVALSSLRILNISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VE 278
             +  +    L +L+ L++S N L       L EGL      + ++  +  SL       
Sbjct: 102 CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTF- 334
           L+  L         L +S+N ++      + +       +L  L L +  +T  + +   
Sbjct: 162 LASVL-RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 335 ---KDLVFLQRLDLRNNSIG-----YIEDNAFLSLYNLHTIYLSENRIHHITA-HLFNGL 385
                   L+ L L +N +G      +          L T+++ E  I       L   L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 386 YVLSKLT---LSNNLLVNIDSKAF-----KNCSALKELDLSSNAI-----VEIPSALSEL 432
                L    L+ N L +  ++       +    L+ L + S +          S L++ 
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 433 PFLKTLDLGENQIS-----KIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPS 482
            FL  L +  N++      ++  G  +    L  L L D ++ +     L++  L    S
Sbjct: 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHS 399

Query: 483 LEVLNLSKNKIHQIEIGTF-----EKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
           L  L+LS N +    I        +    L  + L   + ++   +   L  L 
Sbjct: 400 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE--MEDRLQALE 451

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  117 bits (295), Expect = 1e-27
 Identities = 80/430 (18%), Positives = 143/430 (33%), Gaps = 80/430 (18%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-----IAPNAFVALSSLRILN 246
           D++ LD+   +L        +   ++ Q + L++  +++     I+ +A     +L  LN
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELN 62

Query: 247 ISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VELSRGLFHKLEQLLVLDLS 296
           + SN L       + +GL +    I ++  Q   L       LS  L   L  L  L LS
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLS 121

Query: 297 SNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNS 349
            N L       + E       RL  L L    L+    +      +     + L + NN 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 350 IGYIEDNAFLSL--------YNLHTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNL 397
           I    +     L          L  + L    +       L   +     L +L L +N 
Sbjct: 182 IN---EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 398 L----VNIDSKAFKNCS-ALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQIS- 446
           L    +        + S  L+ L +    I      ++   L     LK L L  N++  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298

Query: 447 ----KIENGSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLEVLNLSKNKIH---- 494
                +     +   QL  L +   +         S +L +   L  L +S N++     
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358

Query: 495 -QIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK 553
            ++  G  +    L  + L    ++D +   + LA  L      NH           +L+
Sbjct: 359 RELCQGLGQPGSVLRVLWLADCDVSD-SSC-SSLAATL----LANH-----------SLR 401

Query: 554 WLDIHGNYIS 563
            LD+  N + 
Sbjct: 402 ELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 87.7 bits (218), Expect = 5e-18
 Identities = 62/327 (18%), Positives = 120/327 (36%), Gaps = 59/327 (18%)

Query: 340 LQRLDLRNNSIGYIEDNAFLSLY----NLHTIYLSENRIHHITA-HLFNGLYVLSKLT-- 392
           +Q LD++   +    D  +  L         + L +  +       + + L V   L   
Sbjct: 5   IQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 61

Query: 393 -LSNNLL----VNIDSKAFKNCSA-LKELDLSSNAI-----VEIPSALSELPFLKTLDLG 441
            L +N L    V+   +  +  S  +++L L +  +       + S L  LP L+ L L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 442 ENQIS-----KIENGSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLEVLNLSKNK 492
           +N +       +  G      +L  L+L   ++   S    + +L   P  + L +S N 
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 493 I-----HQIEIGTFEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHL-- 540
           I       +  G  +   +L A++L+S  +T      + G+    A L  L L  N L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 541 ---VWFDYAMVPGN--LKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHNRI---- 587
                    ++  +  L+ L I    I++     ++   L    S+K L  + N +    
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITA-KGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 588 -LEISE-LSIPN-SVEVLFINNNLIKS 611
              + E L  P   +E L++ +    +
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTA 327

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 83.1 bits (206), Expect = 1e-16
 Identities = 77/460 (16%), Positives = 144/460 (31%), Gaps = 146/460 (31%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNL--KRLTINTRNLQWDKSKKLDLVPGSLDG 124
            + + +L+EL +S+  L +      +GL+ L    L    R                   
Sbjct: 109 LRTLPTLQELHLSDNLLGD------AGLQLLCEGLLDPQCR------------------- 143

Query: 125 LRELQVLNISSSNIKSISDDVFCSL----ANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
              L+ L +   ++ + S +   S+     + + L +S N I +                
Sbjct: 144 ---LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE---------------- 184

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ-----IAPNA 235
           +G ++ C G        L  +               +L+ L LE+  ++      +    
Sbjct: 185 AGVRVLCQG--------LKDSPC-------------QLEALKLESCGVTSDNCRDLC-GI 222

Query: 236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL 295
             + +SLR L + SN L     G                 + EL  GL H   +L  L +
Sbjct: 223 VASKASLRELALGSNKL--GDVG-----------------MAELCPGLLHPSSRLRTLWI 263

Query: 296 SSNHLSSNHIDE--TTFIGLIRLIILNLSNNELTRIDAKTFKDLVF-----LQRLDLRNN 348
               +++    +          L  L+L+ NEL    A+   + +      L+ L +++ 
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 349 SIGYIEDNAFLSL-------YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI 401
           S                     L  + +S NR+         G+  L +           
Sbjct: 324 SFT---AACCSHFSSVLAQNRFLLELQISNNRLED------AGVRELCQGLGQPG----- 369

Query: 402 DSKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQIS-----KIENG 451
                   S L+ L L+   + +     + + L     L+ LDL  N +      ++   
Sbjct: 370 --------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 452 SFKNLQQLTDLRLVDNNIGNLSSGMLYEL----PSLEVLN 487
             +    L  L L D          L  L    PSL V++
Sbjct: 422 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score =  115 bits (291), Expect = 1e-29
 Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C          VDC+ + +  +P  IP+  T + L+ N    I +         
Sbjct: 2   CPAMCHC------EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISS--------- 46

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                         +  F  L  L  L L+ N +T      F+    + EL L EN+I+ 
Sbjct: 47  --------------DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
           I+N  F  L  L+ L L  N++      +F+ + NS L  + L +NPF+C+C  L     
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNS-LTSLNLASNPFNCNC-HLAWFAE 149

Query: 922 WIIDNSNKV 930
           W+   S   
Sbjct: 150 WLRKKSLNG 158

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 77.3 bits (191), Expect = 3e-16
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 2/105 (1%)

Query: 413 KELDLSSNAIVEIPSA--LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG 470
            EL L+ N +  I S      LP L  L+L  NQ++ IE  +F+    + +L+L +N I 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
            +S+ M   L  L+ LNL  N+I  +  G+FE    L ++ L SN
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 318 ILNLSNNELTRIDAK-TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHH 376
            L L++NEL RI +   F  L  L +L+L+ N +  IE NAF    ++  + L EN+I  
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           I+  +F GL+ L  L L +N +  +   +F++ ++L  L+L+SN
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 436 KTLDLGENQISKIE-NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH 494
             L L +N++ +I  +G F  L  L  L L  N +  +          ++ L L +NKI 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 495 QIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
           +I    F    +L  + L  N ++ +  G F +L  L  LNL+ N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 24/128 (18%)

Query: 341 QRLDLRNNSIGYIEDNA-FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV 399
             L L +N +G I  +  F  L +L  + L  N++  I  + F G   + +L L  N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
            I +K F     LK L+L                         NQIS +  GSF++L  L
Sbjct: 92  EISNKMFLGLHQLKTLNLYD-----------------------NQISCVMPGSFEHLNSL 128

Query: 460 TDLRLVDN 467
           T L L  N
Sbjct: 129 TSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 1/105 (0%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            L L+ N L      +  F  L  L+ L L  N+LT I+   F+    +Q L L  N I 
Sbjct: 33  ELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
            I +  FL L+ L T+ L +N+I  +    F  L  L+ L L++N
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 26/107 (24%), Positives = 46/107 (42%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
               L L+ N+L  +       +   L  L L+ N+++ I PNAF   S ++ L +  N 
Sbjct: 30  HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
           +  +   +F     +  +    N +  +  G F  L  L  L+L+SN
Sbjct: 90  IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 59.2 bits (144), Expect = 6e-10
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 7/94 (7%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
           F  +  L +L++   +L  +  + F G  +++ L +    ++       ++      GL 
Sbjct: 50  FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-------EISNKMFLGLH 102

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN 160
           +L+ LN+  + I  +    F  L ++ +LNL+ N
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 73/186 (39%)

Query: 504 NKRLAAI-----------RLDSNFLTDI--NGVFTYLAQLLWLNLSENHLVW-----FDY 545
            + L  I            L+ N L  I  +G+F  L  L+ L L  N L       F+ 
Sbjct: 17  GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76

Query: 546 AMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
           A    +++ L +  N I  ++N  ++  GL                       ++ L + 
Sbjct: 77  AS---HIQELQLGENKIKEISN--KMFLGLH---------------------QLKTLNLY 110

Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCD 665
           +N I  V     F+  +L                           +L    L  NPF+C+
Sbjct: 111 DNQISCV-MPGSFE--HL--------------------------NSLTSLNLASNPFNCN 141

Query: 666 CSMDWL 671
           C + W 
Sbjct: 142 CHLAWF 147

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 74  EELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLN 132
            EL +++ +L  +  D +F  L +L +L +    L         + P + +G   +Q L 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-------GIEPNAFEGASHIQELQ 84

Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           +  + IK IS+ +F  L  ++TLNL  N I  +
Sbjct: 85  LGENKIKEISNKMFLGLHQLKTLNLYDNQISCV 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score =  115 bits (290), Expect = 1e-29
 Identities = 61/192 (31%), Positives = 92/192 (47%), Gaps = 34/192 (17%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   + C+ + +++VP  IP  AT + L+ N  +++P+ V       
Sbjct: 1   CPSRCSC------SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGV------- 47

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                            F+ L+ L  L L  N I       FD L KL+ LYL EN+++ 
Sbjct: 48  -----------------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
           + NG F+ L  L+ L LD N+LKS     FD  T+  L+K++L  NP+ CSC  +  L  
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCPRIDYLSR 148

Query: 922 WIIDNSNKVKDG 933
           W+  NS K +  
Sbjct: 149 WLNKNSQKEQGS 160

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
             L LE+N++  +    F  L+ L  L++S N + SLP+G+F     ++ +Y  +N L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNN 324
           L  G+F KL QL  L L +N L S  + +  F  L  L  + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
             L+L  N++  + +G F  L QLT L L  N I +L  G+  +L  L +L L +NK+  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSEN 538
           +  G F+K  +L  + LD+N L  + +G+F  L  L  + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 2/109 (1%)

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           SS   L + SN L SLP G+F     ++++   +N +  L  G+F KL +L +L L  N 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           L S  +    F  L +L  L L  N+L  +    F  L  LQ++ L  N
Sbjct: 88  LQS--LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 64.2 bits (157), Expect = 9e-12
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 413 KELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
             L+L SN +  +P     +L  L  L L +NQI  + +G F  L +LT L L +N + +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
           L +G+  +L  L+ L L  N++  +  G F++   L  I L +N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 23/127 (18%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
            RL+L +N +  +    F  L  L  + LS+N+I  +   +F+ L  L+ L L  N L +
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
           + +  F                         L  LK L L  NQ+  + +G F  L  L 
Sbjct: 91  LPNGVFDK-----------------------LTQLKELALDTNQLKSVPDGIFDRLTSLQ 127

Query: 461 DLRLVDN 467
            + L  N
Sbjct: 128 KIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 30/103 (29%), Positives = 50/103 (48%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
            L L +N+L  +    F  L  L +L L  N I  + D  F  L  L  +YL EN++  +
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
              +F+ L  L +L L  N L ++    F   ++L+++ L +N
Sbjct: 92  PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            L+L SN L S  +    F  L +L  L+LS N++  +    F  L  L  L L  N + 
Sbjct: 32  RLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
            + +  F  L  L  + L  N++  +   +F+ L  L K+ L  N
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 179 SNSGEKIECSGGM----------DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENN 226
           S SG +I C+                 L+L  NKL++L  G +  +T+   L  L L  N
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQ---LTKLSLSQN 62

Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
           +I  +    F  L+ L IL +  N L SLP G+F     + E+    N L  +  G+F +
Sbjct: 63  QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

Query: 287 LEQLLVLDLSSN 298
           L  L  + L +N
Sbjct: 123 LTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%)

Query: 37  LSFVPTDLITKLNIDCDATVL-LDS----SITTKSFQNIYSLEELKISNCKLVELPVDVF 91
           L+ VPT       I   AT L L+S    S+    F  +  L +L +S  ++  LP  VF
Sbjct: 19  LTSVPT------GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72

Query: 92  SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN 151
             L  L  L ++   LQ        L  G  D L +L+ L + ++ +KS+ D +F  L +
Sbjct: 73  DKLTKLTILYLHENKLQ-------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125

Query: 152 IQTLNLSRN----SIRDIDTL-GFAVRRASAESNSGEKIECSGG 190
           +Q + L  N    S   ID L  +  + +  E  S    +CSG 
Sbjct: 126 LQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGS---AKCSGS 166

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 41/188 (21%), Positives = 62/188 (32%), Gaps = 86/188 (45%)

Query: 504 NKRLAAI-----------RLDSNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG- 550
           +K L ++            L+SN L  + +GVF  L QL  L+LS+N +     ++  G 
Sbjct: 16  SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----SLPDGV 71

Query: 551 -----NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFIN 605
                 L  L +H N + SL                                        
Sbjct: 72  FDKLTKLTILYLHENKLQSL---------------------------------------- 91

Query: 606 NNLIKSVKPHTFFDK-SNLARVDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLGG 659
                   P+  FDK + L           +L L   +LK VP        +L + +L  
Sbjct: 92  --------PNGVFDKLTQL----------KELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133

Query: 660 NPFDCDCS 667
           NP+DC C 
Sbjct: 134 NPWDCSCP 141

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 39/143 (27%)

Query: 98  KRLT-------INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA 150
           K LT        +   L+ + +K   L  G  D L +L  L++S + I+S+ D VF  L 
Sbjct: 17  KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76

Query: 151 NIQTLNLSRNSIRDI-----DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
            +  L L  N ++ +     D L                        L+ L L  N+L++
Sbjct: 77  KLTILYLHENKLQSLPNGVFDKLT----------------------QLKELALDTNQLKS 114

Query: 206 L--GDYSGITKFRRLQNLHLENN 226
           +  G +  +T    LQ + L  N
Sbjct: 115 VPDGIFDRLTS---LQKIWLHTN 134

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  122 bits (308), Expect = 6e-29
 Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 32/278 (11%)

Query: 195 ILDLSHNKLRTLGD--YSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
             +  +N +       +S   K+ +        NE   +       ++    L ++  +L
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
            SLP+ L         +   +N+L+ L          L  LD   N LS+  + E     
Sbjct: 72  SSLPDNLPPQIT---VLEITQNALISLPELP----ASLEYLDACDNRLST--LPEL---- 118

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
              L  L++ NN+LT +          L+ ++  NN +  + +       +L  + +  N
Sbjct: 119 PASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNN 170

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS---ALKELDLSSNAIVEIPSAL 429
           ++  +     +    L  L +S NLL ++ +   +N              N I  IP  +
Sbjct: 171 QLTFLPELPES----LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226

Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
             L    T+ L +N +S     S        D      
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  109 bits (273), Expect = 1e-24
 Identities = 42/254 (16%), Positives = 90/254 (35%), Gaps = 28/254 (11%)

Query: 291 LVLDLSSNHLSSNHIDETTFIG-LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS 349
           L  +   N +S  + D  +      +  +   + NE   +  +    +     L L   +
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLN 70

Query: 350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNC 409
           +  + DN       +  + +++N +  +     +    L  L   +N L  +        
Sbjct: 71  LSSLPDNLPP---QITVLEITQNALISLPELPAS----LEYLDACDNRLSTLPE----LP 119

Query: 410 SALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI 469
           ++LK LD+ +N +  +P   + L   + ++   NQ++ +          L  L + +N +
Sbjct: 120 ASLKHLDVDNNQLTMLPELPALL---EYINADNNQLTMLPE----LPTSLEVLSVRNNQL 172

Query: 470 GNLSSGMLYELPSLEVLNLSKNKIHQI--EIGTFEKNKRL-AAIRLDSNFLTDINGVFTY 526
             L         SLE L++S N +  +         ++      R   N +T I      
Sbjct: 173 TFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228

Query: 527 LAQLLWLNLSENHL 540
           L     + L +N L
Sbjct: 229 LDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  105 bits (263), Expect = 2e-23
 Identities = 67/426 (15%), Positives = 122/426 (28%), Gaps = 57/426 (13%)

Query: 96  NLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTL 155
           N   L+ N+       S        + D   +  +   + +   S+  +  C +     L
Sbjct: 9   NNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSEL 64

Query: 156 NLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF 215
            L+R ++  +                      +    + +L+++ N L +L +       
Sbjct: 65  QLNRLNLSSLPD--------------------NLPPQITVLEITQNALISLPE-----LP 99

Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
             L+ L   +N +S + P      +SL+ L++ +N L  LPE        +  I A  N 
Sbjct: 100 ASLEYLDACDNRLSTL-PE---LPASLKHLDVDNNQLTMLPELPAL----LEYINADNNQ 151

Query: 276 LVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDA---K 332
           L  L          L VL + +N L    + E        L  L++S N L  + A   +
Sbjct: 152 LTMLP----ELPTSLEVLSVRNNQL--TFLPEL----PESLEALDVSTNLLESLPAVPVR 201

Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
                        R N I +I +N  LSL    TI L +N +        +         
Sbjct: 202 NHHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
                                   L+       P                 + +   +  
Sbjct: 261 GPRIYF-----SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAF 315

Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL 512
              L      R        +++  L +L +   L      +      + E    L    L
Sbjct: 316 LDRLSDTVSARNTSGFREQVAA-WLEKLSASAELRQQSFAVAADATESCEDRVALTWNNL 374

Query: 513 DSNFLT 518
               L 
Sbjct: 375 RKTLLV 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 8e-20
 Identities = 60/401 (14%), Positives = 122/401 (30%), Gaps = 83/401 (20%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
              EL+++   L  LP ++   +  L  +T N           L  +P     L     L
Sbjct: 60  QFSELQLNRLNLSSLPDNLPPQITVL-EITQN----------ALISLPELPASLEY---L 105

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
           +   + + ++ +      A+++ L++  N +  +  L                       
Sbjct: 106 DACDNRLSTLPE----LPASLKHLDVDNNQLTMLPEL---------------------PA 140

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
            L  ++  +N+L  L +         L+ L + NN+++ +         SL  L++S+N 
Sbjct: 141 LLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNL 191

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           L SLP                            H  E  +      N ++  HI E   +
Sbjct: 192 LESLPAVPVR---------------------NHHSEETEIFFRCRENRIT--HIPE-NIL 227

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY---IEDNAFLSLYNLHTIY 368
            L     + L +N L+    ++                       ++     L +  T +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAW 287

Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
             EN+   ++       +     T S  L    D+ + +N S  +        +      
Sbjct: 288 FPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFR------EQVAAWLEK 341

Query: 429 LSELPFL--KTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           LS    L  ++  +  +     E+        L    LV  
Sbjct: 342 LSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQ 382

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 3e-18
 Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 57/286 (19%)

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE--LPFLKTLDL 440
           N  + LS+     N +    +  F      ++  L      E  S L E  +     L L
Sbjct: 8   NNNFSLSQN-SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 441 GENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
               +S + +     +  L    +  N + +L         SLE L+   N++  +    
Sbjct: 67  NRLNLSSLPDNLPPQITVL---EITQNALISLPE----LPASLEYLDACDNRLSTLP--- 116

Query: 501 FEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN 560
                                      A L  L++  N L        P  L++++   N
Sbjct: 117 ------------------------ELPASLKHLDVDNNQLTMLPEL--PALLEYINADNN 150

Query: 561 YISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK 620
            ++ L          S++ L   +N++  + EL  P S+E L ++ NL++S+ P      
Sbjct: 151 QLTMLPE--LPT---SLEVLSVRNNQLTFLPEL--PESLEALDVSTNLLESL-PAVPVRN 202

Query: 621 SNLARVDIYANDITKLDLTALRLKPVPQN----KTLPEFYLGGNPF 662
            +    +I+            R+  +P+N           L  NP 
Sbjct: 203 HHSEETEIF------FRCRENRITHIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 3e-12
 Identities = 53/373 (14%), Positives = 115/373 (30%), Gaps = 60/373 (16%)

Query: 36  NLSFVPTDL---ITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
           NLS +P +L   IT L I  +A + L             SLE L   + +L  LP     
Sbjct: 70  NLSSLPDNLPPQITVLEITQNALISLPELPA--------SLEYLDACDNRLSTLP----E 117

Query: 93  GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANI 152
              +LK L ++   L          +P     L     +N  ++ +  + +       ++
Sbjct: 118 LPASLKHLDVDNNQLTM--------LPELPALLEY---INADNNQLTMLPE----LPTSL 162

Query: 153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI-ECSGGM-----DLRILDLSHNKLRTL 206
           + L++  N +  +  L  ++      +N  E +                     N++  +
Sbjct: 163 EVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222

Query: 207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI 266
            +   I        + LE+N +S     +    ++    +    +         +  R +
Sbjct: 223 PE--NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280

Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL---------SSNHIDETTFIGLIRLI 317
           ++  A      E  +    ++      +  +N           + +  + + F   +   
Sbjct: 281 AD--AVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAW 338

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
           +  LS +   R            Q   +  ++    ED   L+  NL    L       +
Sbjct: 339 LEKLSASAELR-----------QQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGL 387

Query: 378 TAHLFNGLYVLSK 390
             +    L  L +
Sbjct: 388 FDNDTGALLSLGR 400

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 1e-08
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 54/215 (25%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
             + +  +   +S++P  +P   T + +  N   ++P        ++  L   ++++  +
Sbjct: 60  QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELP----ASLEYLDACDNRLSTL 115

Query: 817 ---------LNQTFNGLS-------SLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
                    L+   N L+        L+ ++ +NN +T       +    L  L ++ N+
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTML----PELPTSLEVLSVRNNQ 171

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSF--------------RAFDLNTNSM-------- 898
           + ++         SL+ L +  N L+S                 F    N +        
Sbjct: 172 LTFLPEL----PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL 227

Query: 899 ----LRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
                  + L +NP S         QT   D    
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.5 bits (136), Expect = 5e-08
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 15/172 (8%)

Query: 762 DCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF 821
           D    Q++ +P    +   ++  D N    +P        ++  L V N+Q+  +     
Sbjct: 126 DVDNNQLTMLPELPAL-LEYINADNNQLTMLPELP----TSLEVLSVRNNQLTFLPEL-- 178

Query: 822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSE----LYLQENRIEYIANGTFNALISLQV 877
               SL+ L +  NL+               E       +ENRI +I     + L     
Sbjct: 179 --PESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCT 234

Query: 878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK 929
           + L+ N L S     L+  +     +     FS S      L   + D    
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  117 bits (296), Expect = 9e-29
 Identities = 67/426 (15%), Positives = 114/426 (26%), Gaps = 113/426 (26%)

Query: 66  SFQNIYSLEELKISNC-KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
              +    E L       L          L   +R     RN                  
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYH----DVLSQWQRHYNADRNRW--------HSAWRQAN 54

Query: 125 LRELQVLNISSSNIKSISDDV-FCSLANIQTLNLSRNSIRDI-DTLGFAVRRASAESNSG 182
               Q+   +   +K+ +D +   +      L L    +    D                
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH--------- 105

Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
                     L+ + +    L  L D   + +F  L+ L L  N +  + P +  +L+ L
Sbjct: 106 ----------LQHMTIDAAGLMELPD--TMQQFAGLETLTLARNPLRAL-PASIASLNRL 152

Query: 243 RILNISS-NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS 301
           R L+I +   L  LPE L S+                 + G    L  L  L L    + 
Sbjct: 153 RELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR 196

Query: 302 S--NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           S    I       L  L  L + N+ L+ +                   +I         
Sbjct: 197 SLPASIAN-----LQNLKSLKIRNSPLSAL-----------------GPAIH-------- 226

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
            L  L  + L                            L N     F   + LK L L  
Sbjct: 227 HLPKLEELDLR-----------------------GCTALRNY-PPIFGGRAPLKRLILKD 262

Query: 420 -NAIVEIPSALSELPFLKTLDLGEN-QISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
            + ++ +P  +  L  L+ LDL     +S++ +     L     + +  +    L     
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 478 YELPSL 483
              P+ 
Sbjct: 322 VARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 49/363 (13%), Positives = 108/363 (29%), Gaps = 74/363 (20%)

Query: 280 SRGLFHKLEQLLVLDLS-SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV 338
           S    H       L    S  L   H        L +      ++        +   +  
Sbjct: 4   SHHHHHHSSGRENLYFQGSTALRPYHD------VLSQWQRHYNADRNRWHSAWR-QANSN 56

Query: 339 FLQRLDLRNNSIGYIEDN-AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL 397
             Q       ++    D     +      + L    +                       
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQF-------------------- 96

Query: 398 LVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQ 457
                       S L+ + + +  ++E+P  + +   L+TL L  N +  +   S  +L 
Sbjct: 97  -----PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA-SIASLN 150

Query: 458 QLTDLRLVDNN--------IGNLSS-GMLYELPSLEVLNLSKNKIHQI--EIGTFEKNKR 506
           +L +L +            + +  + G    L +L+ L L    I  +   I      + 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL---QN 207

Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSE-NHLVWFDYAMVP------GNLKWLDIHG 559
           L ++++ ++ L+ +     +L +L  L+L     L        P        LK L +  
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-----NYPPIFGGRAPLKRLILKD 262

Query: 560 -NYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSV------EVLFINNNLIKSV 612
            + + +L    +I     ++ LD      L      +P+ +       ++ +  +L   +
Sbjct: 263 CSNLLTLPL--DIHRLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPHLQAQL 316

Query: 613 KPH 615
             H
Sbjct: 317 DQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 4e-17
 Identities = 45/249 (18%), Positives = 91/249 (36%), Gaps = 44/249 (17%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
                +  L+ + I    L+ELP D       L+ LT+  RN        L  +P S+  
Sbjct: 98  DQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLA-RN-------PLRALPASIAS 148

Query: 125 LRELQVLNISSSN-IKSISDDV--------FCSLANIQTLNLSRNSIRDI-DTLGFAVRR 174
           L  L+ L+I +   +  + + +           L N+Q+L L    IR +  ++      
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN- 207

Query: 175 ASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPN 234
                             L+ L + ++ L  LG    I    +L+ L L      +  P 
Sbjct: 208 ------------------LKSLKIRNSPLSALGP--AIHHLPKLEELDLRGCTALRNYPP 247

Query: 235 AFVALSSLRILNISS-NHLVSLPEGLFSSCRDISEIYAQKNS-LVELSRGLFHKLEQLLV 292
            F   + L+ L +   ++L++LP  +      + ++  +    L  L   +  +L    +
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCI 305

Query: 293 LDLSSNHLS 301
           + +  +  +
Sbjct: 306 ILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 31/225 (13%)

Query: 57  LLDSSITT--KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKK 114
           +  + +     + Q    LE L ++   L  LP    + L  L+ L+I        +  +
Sbjct: 111 IDAAGLMELPDTMQQFAGLETLTLARNPLRALP-ASIASLNRLRELSIRACP----ELTE 165

Query: 115 L------DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI-DT 167
           L          G   GL  LQ L +  + I+S+      +L N+++L +  + +  +   
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALGPA 224

Query: 168 LG-------FAVRRASAESNSGEKI-ECSGGMD-LRILDLSH-NKLRTLGDYSGITKFRR 217
           +          +R       +        GG   L+ L L   + L TL     I +  +
Sbjct: 225 IHHLPKLEELDLR----GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--DIHRLTQ 278

Query: 218 LQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSS 262
           L+ L L         P+    L +  I+ +  +    L +    +
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 20/146 (13%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 757 NTNVVDCSEQQISTVPPRIPMDA----THVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNS 811
           N  +   + + +      +          + L        P+     R  ++  + ++ +
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQ--AFRLSHLQHMTIDAA 114

Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQE-NRIEYI------ 864
            +  + +      + L+ L L  N +         +L +L EL ++    +  +      
Sbjct: 115 GLMELPDTMQQ-FAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 865 --ANGTFNALISLQVLQLDGNRLKSF 888
             A+G    L++LQ L+L+   ++S 
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSL 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  114 bits (288), Expect = 2e-28
 Identities = 53/270 (19%), Positives = 98/270 (36%), Gaps = 39/270 (14%)

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
            R   I  +  +    L N     L +  +  + +     L  +      N+ + ++   
Sbjct: 4   QRPTPINQVFPDP--GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG- 58

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
             +  + LKEL LS N I ++ S L +L  L+ L +  N++  +       L +L    L
Sbjct: 59  -MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF---L 113

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
            +N + +  S  L  L +LE+L++  NK+  I +       +L  + L  N +T+  G  
Sbjct: 114 DNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG-- 167

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY--EIKDGLSIKNLDA 582
             L +L                     + W+D+ G    +    Y  E+    ++K+ D 
Sbjct: 168 --LTRL-------------------KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDG 206

Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSV 612
                  IS         VL+        V
Sbjct: 207 RWISPYYISNGGSYVDGCVLWELPVYTDEV 236

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  102 bits (255), Expect = 5e-24
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
           +       +  +        +   + +L   ++ ++  +  EL  ++  +   + I  + 
Sbjct: 1   ESIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA 57

Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
               +    L +L L  N I +LS   L +L  LE L++++N++  +       +  L+ 
Sbjct: 58  G--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN---GIPSACLSR 110

Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           + LD+N L D +    +L  L  L++  N L           L+ LD+HGN I++     
Sbjct: 111 LFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169

Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIY 629
            +K    +  +D +  + +       P       + +   + + P+   +  +     + 
Sbjct: 170 RLK---KVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226

Query: 630 ANDITKLD 637
                  D
Sbjct: 227 WELPVYTD 234

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.9 bits (247), Expect = 6e-23
 Identities = 55/278 (19%), Positives = 105/278 (37%), Gaps = 40/278 (14%)

Query: 132 NISSSN-IKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGG 190
           +I     I  +  D    LAN    NL + S+ D+ +                       
Sbjct: 2   SIQRPTPINQVFPD--PGLANAVKQNLGKQSVTDLVSQKELSG----------------- 42

Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
             ++  +  ++ +++L   +G+  F  L+ LHL +N+IS ++P     L+ L  L+++ N
Sbjct: 43  --VQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95

Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF 310
            L +L  G+      +S ++   N L +        L+ L +L + +N L          
Sbjct: 96  RLKNL-NGI--PSACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLK----SIVML 146

Query: 311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLS 370
             L +L +L+L  NE+T         L  +  +DL               LY  +T+   
Sbjct: 147 GFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
           + R   I+ +  +         +   L V  D  ++K 
Sbjct: 205 DGRW--ISPYYISNGGSYVDGCVLWELPVYTDEVSYKF 240

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 92.8 bits (231), Expect = 9e-21
 Identities = 44/253 (17%), Positives = 82/253 (32%), Gaps = 18/253 (7%)

Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS 267
                         +L    ++ +       LS ++  N  ++++ SL         ++ 
Sbjct: 11  QVFPDPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAG--MQFFTNLK 66

Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
           E++   N + +LS      L +L  L ++ N      +     I    L  L L NNEL 
Sbjct: 67  ELHLSHNQISDLSP--LKDLTKLEELSVNRNR-----LKNLNGIPSACLSRLFLDNNELR 119

Query: 328 RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV 387
             D+     L  L+ L +RNN +  I       L  L  + L  N I +        L  
Sbjct: 120 DTDS--LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNTGG--LTRLKK 173

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
           ++ + L+    VN   K          +       +  P  +S         +       
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYYISNGGSYVDGCVLWELPVY 232

Query: 448 IENGSFKNLQQLT 460
            +  S+K  + + 
Sbjct: 233 TDEVSYKFSEYIN 245

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 27/174 (15%), Positives = 67/174 (38%), Gaps = 15/174 (8%)

Query: 762 DCSEQQISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
           +  +Q ++ +  +  +    +   D +  +++         N+  L+++++QI  +    
Sbjct: 25  NLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-- 80

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
              L+ L+ L +  N + +  G     L     L+L  N +    +     L +L++L +
Sbjct: 81  LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRDTDS--LIHLKNLEILSI 135

Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNNPFS--CSCATLQELQTWIIDNSNKVKD 932
             N+LKS       +   L  + L  N  +       L+++    +    K  +
Sbjct: 136 RNNKLKSIVMLGFLSK--LEVLDLHGNEITNTGGLTRLKKVNWIDLTG-QKCVN 186

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 39/186 (20%)

Query: 65  KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDG 124
              Q   +L+EL +S+ ++ +L       L  L+ L     ++  ++ K L+     +  
Sbjct: 57  AGMQFFTNLKELHLSHNQISDL--SPLKDLTKLEEL-----SVNRNRLKNLN----GIPS 105

Query: 125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEK 184
              L  L + ++ ++         L N++ L++  N ++ I  L                
Sbjct: 106 AC-LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVML---------------- 146

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI 244
                   L +LDL  N++    +  G+T+ +++  + L   +              L I
Sbjct: 147 ---GFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVK---YQPELYI 197

Query: 245 LNISSN 250
            N   +
Sbjct: 198 TNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 809 NNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGT 868
             + I  +      GL++    +L    +T         L  +       + I+ +A   
Sbjct: 5   RPTPINQVFP--DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG-- 58

Query: 869 FNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNN 907
                +L+ L L  N++         T   L ++ +  N
Sbjct: 59  MQFFTNLKELHLSHNQISDLSPLKDLTK--LEELSVNRN 95

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score =  110 bits (276), Expect = 6e-28
 Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 44/166 (26%)

Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
            P D +FV + ++ +LE  N   +LC+  RD+   +      +                  
Sbjct: 25   PSDIQFVQE-MIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASEL---------------- 67

Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
                                +  RR+++V++ ++LQ++      + A+  +      +L+
Sbjct: 68   ------------------IEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLI 109

Query: 1155 LVEENIVPEAESDIELKPYLKSCMKIRWG----EKRFWERLRYAMP 1196
             ++   + +     E    L+      +     +  FW RL  A+ 
Sbjct: 110  PIKYKAMKK-----EFPSILRFITVCDYTNPCTKSWFWTRLAKALS 150

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  109 bits (275), Expect = 3e-27
 Identities = 30/178 (16%), Positives = 61/178 (34%), Gaps = 6/178 (3%)

Query: 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
             +  L  +     T   +  L  + L+N  +T +     +    ++ L + N       
Sbjct: 25  YLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN 82

Query: 355 DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE 414
                 L NL  + +    +        +GL  L+ L +S++   +           +  
Sbjct: 83  --PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140

Query: 415 LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
           +DLS N  +     L  LP LK+L++  + +        ++  +L  L      IG  
Sbjct: 141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.6 bits (241), Expect = 8e-23
 Identities = 28/164 (17%), Positives = 60/164 (36%), Gaps = 8/164 (4%)

Query: 286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL 345
           ++  L  + L++ +++    D T       +  L ++N   T  +      L  L+RL +
Sbjct: 42  QMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRI 95

Query: 346 RNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKA 405
               +   +      L +L  + +S +          N L  ++ + LS N  +  D   
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMP 154

Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
            K    LK L++  + + +    + + P L  L      I   +
Sbjct: 155 LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 33/195 (16%), Positives = 75/195 (38%), Gaps = 13/195 (6%)

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
           +     I D+ F +  N     L ++   +IT      +  L+ +TL+N  + ++     
Sbjct: 11  SQDNVNIPDSTFKAYLNG---LLGQSSTANIT---EAQMNSLTYITLANINVTDL--TGI 62

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
           +    +K+L +++       + +S L  L+ L +    ++  +  +   L  LT L +  
Sbjct: 63  EYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIE-IGTFEKNKRLAAIRLDSNFLTDINGVFT 525
           +   +     +  LP +  ++LS N    I  I   +    L ++ +  + + D  G   
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNG--AITDIMPLKTLPELKSLNIQFDGVHDYRG-IE 178

Query: 526 YLAQLLWLNLSENHL 540
              +L  L      +
Sbjct: 179 DFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 54/232 (23%)

Query: 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
              +      +  S+  +I+      + ++  + L+  ++ D+  + +A           
Sbjct: 20  STFKAYLNGLLGQSSTANIT---EAQMNSLTYITLANINVTDLTGIEYAHN--------- 67

Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
                     ++ L +++       +Y+ I+    L+ L +   +++         L+SL
Sbjct: 68  ----------IKDLTINNIHAT---NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
            +L+IS +               +++I               + L ++  +DLS N   +
Sbjct: 115 TLLDISHSAH---------DDSILTKI---------------NTLPKVNSIDLSYNGAIT 150

Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
              D      L  L  LN+  + +        +D   L +L   + +IG  +
Sbjct: 151 ---DIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.4 bits (212), Expect = 6e-19
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 34/220 (15%)

Query: 395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK 454
           +   VNI    FK         L  ++   I    +++  L  + L    ++ +     +
Sbjct: 11  SQDNVNIPDSTFKA---YLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTG--IE 63

Query: 455 NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDS 514
               + DL + + +  N +   +  L +LE L +    +   +I        L  + +  
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 515 NFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKD 573
           +   D        L ++  ++LS N                       I+ +     +K 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYN---------------------GAITDIMP---LKT 157

Query: 574 GLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
              +K+L+   + + +   +     +  L+  +  I   K
Sbjct: 158 LPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 34/199 (17%), Positives = 68/199 (34%), Gaps = 32/199 (16%)

Query: 57  LLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLD 116
           L  SS    +   + SL  + ++N  + +L         N+K LTIN  +         +
Sbjct: 30  LGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT-------N 80

Query: 117 LVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
             P  + GL  L+ L I   ++ S        L ++  L++S ++  D            
Sbjct: 81  YNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI------ 132

Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAF 236
                      +    +  +DLS+N    + D   +     L++L+++ + +        
Sbjct: 133 -----------NTLPKVNSIDLSYNGA--ITDIMPLKTLPELKSLNIQFDGVHDYRG--I 177

Query: 237 VALSSLRILNISSNHLVSL 255
                L  L   S  +   
Sbjct: 178 EDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 11/136 (8%)

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
           K  L+  +  S    I   T   ++SL  + L N  +T   G   +    + +L +    
Sbjct: 23  KAYLNGLLGQSSTANI---TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC----ATL 916
                    + L +L+ L++ G  + S +  +L+  + L  + + ++    S      TL
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 917 QELQTWIIDNSNKVKD 932
            ++ +  +  +  + D
Sbjct: 136 PKVNSIDLSYNGAITD 151

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 20/129 (15%), Positives = 41/129 (31%), Gaps = 7/129 (5%)

Query: 780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITH 839
           T++ L       +         N+  L +NN           +GLS+L+ L +    +T 
Sbjct: 47  TYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTS 102

Query: 840 FYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN-RLKSFRAFDLNTNSM 898
                   L  L+ L +  +  +       N L  +  + L  N  +             
Sbjct: 103 DKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-- 160

Query: 899 LRKVYLGNN 907
           L+ + +  +
Sbjct: 161 LKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIK 610
           +L ++ +    ++ L     I+   +IK+L  ++      + +S  +++E L I    + 
Sbjct: 45  SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101

Query: 611 SVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
           S K       ++L  +DI  +      LT +          +    L  N 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKIN-----TLPKVNSIDLSYNG 147

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score =  107 bits (269), Expect = 4e-27
 Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 43/171 (25%)

Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
             +D  +V   +V ELE+ NP ++L LH RD  H    +                      
Sbjct: 14   ERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWII---------------------- 51

Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
                         D +I++ E S + + VL++NF+++EW + +   +            +
Sbjct: 52   -------------DNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAI 98

Query: 1155 LVE-ENIVPEA--ESDIELKPYLKSCMKIRW-----GEKRFWERLRYAMPT 1197
            L+  E I  +A  +   +L+  + +   + W       + FW  LR A+ +
Sbjct: 99   LILLEPIEKKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS 149

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  106 bits (266), Expect = 4e-25
 Identities = 60/291 (20%), Positives = 97/291 (33%), Gaps = 42/291 (14%)

Query: 173 RRASAESNSGEKIECSGGMDLRILDLSHNKL--RTLGDYSGITKFRRLQNLHLENNEISQ 230
           +R   E++ G+  +    + L+ L +   ++  R L     +     LQ L LEN E++ 
Sbjct: 50  KRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG 109

Query: 231 IAPNAFVALS--SLRILNISSNHLVSLPEGLFS----SCRDISEIYAQKNSLVELSRGLF 284
            AP   +  +   L ILN+ +    +    L          +  +   +   +  S    
Sbjct: 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 285 HKLEQLLVLDLSSNHLSSNH--IDETTFIGLIRLIILNLSNNELTRID---AKTFKDLVF 339
                L  LDLS N        I     +    L +L L N  +       +      V 
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 340 LQRLDLRNNSIGYIEDN-AFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
           LQ LDL +NS+       +      L+++ LS   +  +   L                 
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---------------- 273

Query: 399 VNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
                      + L  LDLS N +   PS   ELP +  L L  N     E
Sbjct: 274 -----------AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score =  104 bits (260), Expect = 3e-24
 Identities = 52/301 (17%), Positives = 101/301 (33%), Gaps = 34/301 (11%)

Query: 86  LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV 145
             V+++ G R+L+ L +   + + D  +  D+       ++ L +  ++    +  S  +
Sbjct: 34  ADVELYGGGRSLEYL-LKRVDTEADLGQFTDI-------IKSLSLKRLTVRAARIPSRIL 85

Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
           F +L  +    L   ++ +++  G A       +            DL IL+L +    T
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP----------DLNILNLRNVSWAT 135

Query: 206 LGDYSG---ITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-------SL 255
              +           L+ L +        +        +L  L++S N  +       +L
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
               F + + ++   A   +   +   L     QL  LDLS N L        +     +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQ 254

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
           L  LNLS   L ++          L  LDL  N +        L    +  + L  N   
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPSPDELP--QVGNLSLKGNPFL 309

Query: 376 H 376
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 96.5 bits (240), Expect = 1e-21
 Identities = 56/280 (20%), Positives = 88/280 (31%), Gaps = 21/280 (7%)

Query: 277 VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD 336
           VEL  G       L  +D  ++       D    + L RL +            A     
Sbjct: 36  VELYGGGRSLEYLLKRVDTEAD--LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG------LYVLSK 390
           +  LQ L L N  +        L         L+   +   T   +           L  
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-----ALSELPFLKTLDLGENQ- 444
           L+++    +N   +  +   AL  LDLS N  +            + P L+ L L     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 445 --ISKIENGSFKNLQQLTDLRLVDNNIGNL-SSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
              S + +       QL  L L  N++ +   +        L  LNLS   + Q+  G  
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 502 EKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
            K   L+ + L  N L         L Q+  L+L  N  +
Sbjct: 274 AK---LSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.3 bits (229), Expect = 3e-20
 Identities = 52/260 (20%), Positives = 84/260 (32%), Gaps = 50/260 (19%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
            L+EL + N ++                  +N RN+ W                  L+VL
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG-LKVL 154

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
           +I+ ++  + S +       + TL+LS N       L  A+              C    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL--------------CPLKF 200

Query: 192 D-LRILDLSHNKLRTLGDYSG--ITKFRRLQNLHLENNEISQI-APNAFVALSSLRILNI 247
             L++L L +  + T             +LQ L L +N +       +    S L  LN+
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
           S   L  +P+GL +                            L VLDLS N L  N    
Sbjct: 261 SFTGLKQVPKGLPAK---------------------------LSVLDLSYNRLDRN---- 289

Query: 308 TTFIGLIRLIILNLSNNELT 327
            +   L ++  L+L  N   
Sbjct: 290 PSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 1e-17
 Identities = 41/229 (17%), Positives = 72/229 (31%), Gaps = 23/229 (10%)

Query: 25  NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV 84
           NL   G      L     DL   LN+   +    D+ +          L+ L I+    +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNI-LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 85  ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD 144
               +       L  L ++      ++     L P     L+ L + N        +   
Sbjct: 163 NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222

Query: 145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR 204
           +  +   +Q L+LS NS+RD                      C     L  L+LS   L+
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAA----------------GAPSCDWPSQLNSLNLSFTGLK 266

Query: 205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV 253
            +    G+    +L  L L  N + +        L  +  L++  N  +
Sbjct: 267 QV--PKGL--PAKLSVLDLSYNRLDRNPSPDE--LPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 3e-12
 Identities = 39/279 (13%), Positives = 84/279 (30%), Gaps = 24/279 (8%)

Query: 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKA-FKNCSALKELDLSSNAIVEI----PSALSE 431
               L+ G   L  L    +   ++          +LK L + +  I          +  
Sbjct: 34  ADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLG 93

Query: 432 LPFLKTLDLGENQISKI--ENGSFKNLQQLTDLRLVDNNIGN----LSSGMLYELPSLEV 485
           +  L+ L L   +++              L  L L + +       L+    +  P L+V
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY-----LAQLLWLNLSENHL 540
           L++++                L+ + L  N      G+ +         L  L L    +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 541 -----VWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSI 595
                V    A     L+ LD+  N +              + +L+ S   + ++ +  +
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-GL 272

Query: 596 PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT 634
           P  + VL ++ N +             +  + +  N   
Sbjct: 273 PAKLSVLDLSYNRLDRNPSPDEL--PQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 12/131 (9%)

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT-------HFYGYEFDNLEKLSE 853
             +  L +  +       +      +L  L L +N               +F  L+ L+ 
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 854 LYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNN----P 908
                     + +    A + LQ L L  N L+           S L  + L        
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 909 FSCSCATLQEL 919
                A L  L
Sbjct: 269 PKGLPAKLSVL 279

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 6/102 (5%)

Query: 809 NNSQIEVILNQTFNGLSSLQVLHL-ENNLITHFYGYEFDNLEKLSELYLQENRIEYIANG 867
                  + +        LQ L L  N+L         D   +L+ L L    ++ +  G
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

Query: 868 TFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPF 909
                  L VL L  NRL    + D      +  + L  NPF
Sbjct: 272 LPA---KLSVLDLSYNRLDRNPSPDELPQ--VGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 9/107 (8%)

Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYV----NNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
            L     +T            + L      +NS  +     + +  S L  L+L    + 
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRL 885
                    L     L L  NR++   +   + L  +  L L GN  
Sbjct: 267 QVPKGLPAKLS---VLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 18/141 (12%), Positives = 36/141 (25%), Gaps = 14/141 (9%)

Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN----GLSSLQVLHLENNL 836
           ++ + G     +         ++  L + N                    L+VL +    
Sbjct: 104 NLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 837 ITHFYGYEFDNLEKLSELYLQENRI-------EYIANGTFNALISLQVLQLDGNRLKSFR 889
             +F   +      LS L L +N           +    F  L  L +            
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 890 AFDLNTNSMLRKVYLGNNPFS 910
           +        L+ + L +N   
Sbjct: 221 SALAAARVQLQGLDLSHNSLR 241

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  105 bits (264), Expect = 5e-25
 Identities = 51/244 (20%), Positives = 99/244 (40%), Gaps = 55/244 (22%)

Query: 743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPM------------------------- 777
             P +          T   +  ++ ++    +  +                         
Sbjct: 12  IFPDDAFA------ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV 65

Query: 778 --------------------DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL 817
                               + T++ L GN  +++PN VF    N+  L +  +Q++ + 
Sbjct: 66  RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125

Query: 818 NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV 877
           +  F+ L++L  L+L +N +       FD L  L+EL L  N+++ +  G F+ L  L+ 
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKD 185

Query: 878 LQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLD 935
           L+L  N+LKS     FD  T+  L+ ++L +NP+ C+C  ++ L  WI  +S  V++   
Sbjct: 186 LRLYQNQLKSVPDGVFDRLTS--LQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAG 243

Query: 936 ISCV 939
               
Sbjct: 244 SVAP 247

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 13/221 (5%)

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGM 191
            +S+   +   DD F         NL + S+ D  T    +        +   I+   G+
Sbjct: 4   TVSTPIKQIFPDDAFAET---IKANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGI 59

Query: 192 D----LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNI 247
                +R L L  NKL  +     +T    L  L L  N++  +    F  L++L+ L +
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVL 116

Query: 248 SSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE 307
             N L SLP+G+F    +++ +    N L  L +G+F KL  L  LDLS N L S  + E
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPE 174

Query: 308 TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
             F  L +L  L L  N+L  +    F  L  LQ + L +N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 7/198 (3%)

Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
            NL    +T        +L  + ++   N+ I  ++      L N+  + L  N++H I+
Sbjct: 24  ANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS 79

Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL-SELPFLKT 437
           A     L  L+ L L+ N L ++ +  F   + LKEL L  N +  +P  +  +L  L  
Sbjct: 80  A--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
           L+L  NQ+  +  G F  L  LT+L L  N + +L  G+  +L  L+ L L +N++  + 
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197

Query: 498 IGTFEKNKRLAAIRLDSN 515
            G F++   L  I L  N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
              L +  +        N L  + ++  +N+ + ++  +  +    ++ L L  N + +I
Sbjct: 23  KANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI 78

Query: 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEV 485
             AL EL  L  L L  NQ+  + NG F  L  L +L LV+N + +L  G+  +L +L  
Sbjct: 79  S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137

Query: 486 LNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
           LNL+ N++  +  G F+K   L  + L  N L  +  GVF  L QL  L L +N L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 8/200 (4%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
            + +L+  S+          L ++  I  + + I  +       L  +  L L  N L +
Sbjct: 22  IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77

Query: 401 IDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQL 459
           I   A K  + L  L L+ N +  +P+    +L  LK L L ENQ+  + +G F  L  L
Sbjct: 78  I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135

Query: 460 TDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
           T L L  N + +L  G+  +L +L  L+LS N++  +  G F+K  +L  +RL  N L  
Sbjct: 136 TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 520 I-NGVFTYLAQLLWLNLSEN 538
           + +GVF  L  L ++ L +N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 33/228 (14%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
                N+    +        +    I +I A  + +  +       L  +  L L  N L
Sbjct: 20  ETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKL 75

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
                       L  L  L L+ N+L  +    F  L  L+ L L  N +  + D  F  
Sbjct: 76  HDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           L NL  + L+ N++  +   +F+      KLT                   L ELDLS N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFD------KLT------------------NLTELDLSYN 167

Query: 421 AIVEIPS-ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
            +  +P     +L  LK L L +NQ+  + +G F  L  L  + L DN
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 761 VDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT 820
           +  S       P     +     L   +             ++  +  NNS I+ +  Q 
Sbjct: 3   ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QG 58

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
              L +++ L L  N +          L  L+ L L  N+++ + NG F+ L +L+ L L
Sbjct: 59  IQYLPNVRYLALGGNKLHDI-SA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116

Query: 881 DGNRLKSFRA--FDLNTNSMLRKVYLGNN 907
             N+L+S     FD  TN  L  + L +N
Sbjct: 117 VENQLQSLPDGVFDKLTN--LTYLNLAHN 143

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 65/325 (20%), Positives = 112/325 (34%), Gaps = 95/325 (29%)

Query: 399 VNIDSKAFK----NCSA-LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSF 453
           + + +   +    +  A   + +L   ++ +     +EL  +  +    + I  ++    
Sbjct: 3   ITVSTPIKQIFPDDAFAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GI 59

Query: 454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLD 513
           + L  +  L L  N + ++    L EL +L  L L+ N++  +  G F+K   L  + L 
Sbjct: 60  QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117

Query: 514 SNFLTDI-NGVFTYLAQLLWLNLSENHLVWFDYAMVPG------NLKWLDIHGNYISSLN 566
            N L  + +GVF  L  L +LNL+ N L     ++  G      NL  LD+  N + SL 
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQ----SLPKGVFDKLTNLTELDLSYNQLQSL- 172

Query: 567 NYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK-SNLAR 625
                                                          P   FDK + L  
Sbjct: 173 -----------------------------------------------PEGVFDKLTQL-- 183

Query: 626 VDIYANDITKLDLTALRLKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIIN 675
                     L L   +LK VP        +L   +L  NP+DC C       +W   IN
Sbjct: 184 --------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW---IN 232

Query: 676 NNTSPSMERQYPKIMDLDNVVCKMT 700
            +    + R     +  D+  C  +
Sbjct: 233 KH--SGVVRNSAGSVAPDSAKCSGS 255

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 49/269 (18%), Positives = 90/269 (33%), Gaps = 58/269 (21%)

Query: 7   NCSWKMENESMNRISV-TCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTK 65
             S  ++    +     T   N   K     ++    + I ++  +      +      +
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV------Q 57

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
             Q + ++  L +   KL ++       L NL  L +    LQ        L  G  D L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQ-------SLPNGVFDKL 108

Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
             L+ L +  + ++S+ D VF  L N+  LNL+ N ++ +                    
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK------------------ 150

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
                    + D                K   L  L L  N++  +    F  L+ L+ L
Sbjct: 151 --------GVFD----------------KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKN 274
            +  N L S+P+G+F     +  I+   N
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 17/134 (12%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
           F  + +L  L +++ +L  LP  VF  L NL  L ++   LQ        L  G  D L 
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------SLPEGVFDKLT 181

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRRASAESNS 181
           +L+ L +  + +KS+ D VF  L ++Q + L  N    +   I  L  +  + +    NS
Sbjct: 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 241

Query: 182 G-----EKIECSGG 190
                 +  +CSG 
Sbjct: 242 AGSVAPDSAKCSGS 255

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score =  102 bits (255), Expect = 6e-25
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 55/208 (26%)

Query: 1004 FRVWLYTKYGIRLFNFKATSSKHFGEDREKL--------PKDEEFVLQSIVAELEHGNPS 1055
              V L T        F++  +      R             D  +V   ++  LE  + S
Sbjct: 9    SGVDLGT----ENLYFQSMKTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGS 64

Query: 1056 YQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115
              +CL+           +                                    ++   E
Sbjct: 65   ILICLYESYFDPGKSISEN-----------------------------------IVSFIE 89

Query: 1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPE---AESDIELKP 1172
             S + I VL+ NF+Q EW   +F  A H      +  ++L+    +P         +LK 
Sbjct: 90   KSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKA 149

Query: 1173 YLKSCMKIRWGEKR-----FWERLRYAM 1195
             L+    + W + R     FW  LR A+
Sbjct: 150  LLEKKAYLEWPKDRRKCGLFWANLRAAI 177

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 99.8 bits (249), Expect = 2e-24
 Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 43/163 (26%)

Query: 1035 PKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILV 1094
             +D       +V+ LE    S +  L  RD       + +                    
Sbjct: 19   EEDLVAAQD-LVSYLEGSTASLRCFLQLRDATPGGAIVSE-------------------- 57

Query: 1095 LTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLV 1154
                           L +A  +S   +L++T  FLQ  W +     A+ EA   +   + 
Sbjct: 58   ---------------LCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIP 102

Query: 1155 LVEENIVPEAESDIELKPYLKSCMKIRW-GEKRFWERLRYAMP 1196
            L+         S     P L+    +   G    + +++ A+ 
Sbjct: 103  LLSG------LSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVM 139

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score =  102 bits (256), Expect = 3e-23
 Identities = 59/330 (17%), Positives = 102/330 (30%), Gaps = 76/330 (23%)

Query: 293 LDLSSNHLSSNHIDETTFIGLIR-------LIILNLSNNELTRIDAKTF----KDLVFLQ 341
             +    L  + I       +         +  + LS N +    A+           L+
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 342 RLDLRNNSIGYIED----------NAFLSLYNLHTIYLSENRIHHITA-HLFNGLYV--- 387
             +  +   G ++D           A L    LHT+ LS+N         L + L     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 388 LSKLTLSNN-------------LLVNIDSKAFKNCSALKELDLSSNAI-----VEIPSAL 429
           L  L L NN             L     +K  KN   L+ +    N +      E     
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 430 SELPFLKTLDLGENQI-----SKIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYE 479
                L T+ + +N I       +        Q+L  L L DN   +     L+   L  
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKS 242

Query: 480 LPSLEVLNLSKNKIHQ---IEIG---TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWL 533
            P+L  L L+   +       +    +  +N  L  +RL  N +   + V   L  ++  
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL-DAV-RTLKTVIDE 300

Query: 534 NLSENHLVWFDYAMVPGNLKWLDIHGNYIS 563
            +               +L +L+++GN  S
Sbjct: 301 KMP--------------DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 98.6 bits (246), Expect = 7e-22
 Identities = 61/375 (16%), Positives = 110/375 (29%), Gaps = 89/375 (23%)

Query: 193 LRILDLSHNKLRTLGD---YSGITKFRRLQNLHLENNEIS-----QIAPNAFVALSSLRI 244
           +    L  + + T  +   ++ + +   ++ + L  N I       ++     +   L I
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS-ENIASKKDLEI 64

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
              S      + + +  + R + +   +   L  +                    LS N 
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV-------------------RLSDNA 105

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG------------- 351
              T    LI  +  +                   L+ L L NN +G             
Sbjct: 106 FGPTAQEPLIDFLSKHTP-----------------LEHLYLHNNGLGPQAGAKIARALQE 148

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNLL-----VNID 402
              +    +   L +I    NR+ + +             L  + +  N +      ++ 
Sbjct: 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL 208

Query: 403 SKAFKNCSALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQISKI------ENG 451
            +    C  LK LDL  N         +  AL   P L+ L L +  +S        +  
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268

Query: 452 SFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKI-----HQIEIG-T 500
           S      L  LRL  N I       L + +  ++P L  L L+ N+         EI   
Sbjct: 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 328

Query: 501 FEKNKRLAAIRLDSN 515
           F    R     LD  
Sbjct: 329 FSTRGRGELDELDDM 343

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 60/383 (15%), Positives = 109/383 (28%), Gaps = 113/383 (29%)

Query: 319 LNLSNNELTRIDAKTF----KDLVFLQRLDLRNNSIG-----YIEDNAFLSLYNLHTIYL 369
            +L  + +T  D K+      +   ++ + L  N+IG     ++ +    S  +L     
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE-NIASKKDLEIAEF 67

Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAI-----VE 424
           S+     +   +   L +L +              A   C  L  + LS NA        
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQ--------------ALLKCPKLHTVRLSDNAFGPTAQEP 113

Query: 425 IPSALSELPFLKTLDLGENQIS-------------KIENGSFKNLQQLTDLRLVDNNIGN 471
           +   LS+   L+ L L  N +                 N   KN   L  +    N + N
Sbjct: 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173

Query: 472 LS----SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
            S    +        L  + + +N I                            G+   L
Sbjct: 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRP-------------------------EGIEHLL 208

Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
            + L                    LK LD+  N  +          G S           
Sbjct: 209 LEGLAYC---------------QELKVLDLQDNTFTH--------LGSS----------- 234

Query: 588 LEISE-LSIPNSVEVLFINNNLIKS------VKPHTFFDKSNLARVDIYANDITKLDLTA 640
             ++  L    ++  L +N+ L+ +      V   +  +   L  + +  N+I    +  
Sbjct: 235 -ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293

Query: 641 LRLKPVPQNKTLPEFYLGGNPFD 663
           L+     +   L    L GN F 
Sbjct: 294 LKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 77.1 bits (190), Expect = 8e-15
 Identities = 47/325 (14%), Positives = 93/325 (28%), Gaps = 86/325 (26%)

Query: 388 LSKLTLSNNLLVNIDSKAF----KNCSALKELDLSSNAI-----VEIPSALSELPFLKTL 438
           +   +L  + +   D K+         ++KE+ LS N I       +   ++    L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 439 DLGENQISKIEN----------GSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLE 484
           +  +    ++++           +     +L  +RL DN  G  +       L +   LE
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 485 VLNLSKNKI-------------HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
            L L  N +                     +    L +I    N L +   +    A+  
Sbjct: 126 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN-GSM-KEWAKTF 183

Query: 532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHNRI 587
             +                 L  + +  N I      + + +GL     +K LD   N  
Sbjct: 184 QSH---------------RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 588 -----LEISE-LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
                  ++  L    ++  L +N+ L+                    A  +      A 
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLS----------------ARGAAAVVD----AF 268

Query: 642 RLKPVPQNKTLPEFYLGGNPFDCDC 666
                 +N  L    L  N  + D 
Sbjct: 269 S---KLENIGLQTLRLQYNEIELDA 290

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 73.2 bits (180), Expect = 1e-13
 Identities = 63/416 (15%), Positives = 118/416 (28%), Gaps = 99/416 (23%)

Query: 70  IYSLEELKISNCKL----VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
            +S+E   +    +     +    V     ++K + ++   +  + ++ L     S   L
Sbjct: 3   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 126 RELQVLNISSSNIKSISDDVFCSLA-------NIQTLNLSRNSIRDIDTLGFAVRRASAE 178
              +  +I +  +K    +    L         + T+ LS N+                 
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI---DFLS 119

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVA 238
            ++           L  L L +N    LG  +G    R LQ L +     +         
Sbjct: 120 KHT----------PLEHLYLHNNG---LGPQAGAKIARALQELAVNKKAKN--------- 157

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
              LR +    N L +       S ++ ++ +     L                + +  N
Sbjct: 158 APPLRSIICGRNRLEN------GSMKEWAKTFQSHRLLHT--------------VKMVQN 197

Query: 299 HLSSNHIDETTFIGLIR---LIILNLSNNELTRIDAKTF----KDLVFLQRLDLRNNSIG 351
            +    I+     GL     L +L+L +N  T + +       K    L+ L L +  + 
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 352 -----YIEDNAFLSLYN--LHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
                 + D AF  L N  L T+ L  N I                              
Sbjct: 258 ARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTL--------------------KT 296

Query: 405 AFK-NCSALKELDLSSNAI-------VEIPSALSELPFLKTLDLGENQISKIENGS 452
                   L  L+L+ N          EI    S     +  +L + +    E   
Sbjct: 297 VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEE 352

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 50/192 (26%), Positives = 72/192 (37%), Gaps = 58/192 (30%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +   VDCS + +++VP  IP     +YL  N    +   V       
Sbjct: 3   CPSQCSC------SGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV------- 49

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                                                    FD L +L+ L L  N++  
Sbjct: 50  -----------------------------------------FDRLTQLTRLDLDNNQLTV 68

Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
           +  G F+ L  L  L L+ N+LKS    AFD N  S L  ++L NNP+ C+C+ +  L  
Sbjct: 69  LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD-NLKS-LTHIWLLNNPWDCACSDILYLSR 126

Query: 922 WIIDNSNKVKDG 933
           WI  +   V   
Sbjct: 127 WISQHPGLVFGY 138

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           CS    +D S  ++  +P+ +      + L L +NQI+K+E G F  L QLT L L +N 
Sbjct: 9   CSG-TTVDCSGKSLASVPTGIPTT--TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
           +  L +G+  +L  L  L+L+ N++  I  G F+  K L  I L +N
Sbjct: 66  LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
           VL L  N ++   ++   F  L +L  L+L NN+LT + A  F  L  L +L L +N + 
Sbjct: 34  VLYLYDNQITK--LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

Query: 352 YIEDNAFLSLYNLHTIYLSEN 372
            I   AF +L +L  I+L  N
Sbjct: 92  SIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 25/80 (31%), Positives = 44/80 (55%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
           Q L+L +N+I+++ P  F  L+ L  L++ +N L  LP G+F     ++++    N L  
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 279 LSRGLFHKLEQLLVLDLSSN 298
           + RG F  L+ L  + L +N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           ++ ++L +  N +  L  G+F     ++ +    N L  L  G+F KL QL  L L+ N 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 300 LSSNHIDETTFIGLIRLIILNLSNN 324
           L S  I    F  L  L  + L NN
Sbjct: 90  LKS--IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           Q L L +N I  +E   F  L  L  + L  N++  + A +F+ L  L++L+L++N L +
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92

Query: 401 IDSKAFKNCSALKELDLSSN 420
           I   AF N  +L  + L +N
Sbjct: 93  IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
           + + L + + ++ +L   VF  L  L RL ++   L         L  G  D L +L  L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-------VLPAGVFDKLTQLTQL 83

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL-GFAVRRASAESNSG---- 182
           +++ + +KSI    F +L ++  + L  N    +  DI  L  +  +             
Sbjct: 84  SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNLDP 143

Query: 183 EKIECSGG 190
           +   CSG 
Sbjct: 144 DSARCSGT 151

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 5/85 (5%)

Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
             ++L L  N++  L  G +  +T+   L  L L+NN+++ +    F  L+ L  L+++ 
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQ---LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKN 274
           N L S+P G F + + ++ I+   N
Sbjct: 88  NQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
           + +VL L  N+I ++E G F++  +L  + LD+N LT +  GVF  L QL  L+L++N L
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 37/153 (24%)

Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKL---------DLTALR-- 642
           IP + +VL++ +N I  +     FD+ + L R+D+  N +T L          LT L   
Sbjct: 28  IPTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 643 ---LKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKI 689
              LK +P+      K+L   +L  NP+DC CS       W   I+ +            
Sbjct: 87  DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRW---ISQHPGLVFGYLN--- 140

Query: 690 MDLDNVVCKMTYSRGSTHLPA-SEAAPSQYLCP 721
           +D D+  C    S  +T + A +EA+ S   CP
Sbjct: 141 LDPDSARC----SGTNTPVRAVTEASTSPSKCP 169

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 95.2 bits (236), Expect = 1e-22
 Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 44/183 (24%)

Query: 1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIE 1083
            +K   +   +   +EE     I+ ++   +  Y+L +  RDL     Y++       V  
Sbjct: 10   TKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED------VAR 63

Query: 1084 AAEASRRVILVLTKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIH 1143
              + S+R+I+V+T N++                            ++  WS  +  + + 
Sbjct: 64   CVDQSKRLIIVMTPNYV----------------------------VRRGWSIFELETRLR 95

Query: 1144 EALTTKTHKLVLVEENIVPEAESDI---ELKPYLKSCMKIRWG-------EKRFWERLRY 1193
              L T   K++L+E + +    +      LK  +K    I+W          +FW+RL+Y
Sbjct: 96   NMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSKFWKRLQY 155

Query: 1194 AMP 1196
             MP
Sbjct: 156  EMP 158

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 51/202 (25%), Positives = 78/202 (38%), Gaps = 58/202 (28%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  CSC      +  +V+C   ++++VP  IP D   ++L+ N    +   V       
Sbjct: 6   CPSQCSC------DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGV------- 52

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                                                    FD+L  L +LY   N++  
Sbjct: 53  -----------------------------------------FDHLVNLQQLYFNSNKLTA 71

Query: 864 IANGTFNALISLQVLQLDGNRLKSF--RAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT 921
           I  G F+ L  L  L L+ N LKS    AFD N  S L  +YL NNP+ C C  +  L+ 
Sbjct: 72  IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD-NLKS-LTHIYLYNNPWDCECRDIMYLRN 129

Query: 922 WIIDNSNKVKDGLDISCVIDES 943
           W+ D+++ V      +    +S
Sbjct: 130 WVADHTSIVMRWDGKAVNDPDS 151

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
           C     ++  +  +  +P+ +      + L L  NQI+K+E G F +L  L  L    N 
Sbjct: 12  CDQ-TLVNCQNIRLASVPAGIPTD--KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK 68

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
           +  + +G+  +L  L  L+L+ N +  I  G F+  K L  I L +N
Sbjct: 69  LTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG 351
            L L++N ++   ++   F  L+ L  L  ++N+LT I    F  L  L +LDL +N + 
Sbjct: 37  RLWLNNNQITK--LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

Query: 352 YIEDNAFLSLYNLHTIYLSEN 372
            I   AF +L +L  IYL  N
Sbjct: 95  SIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 26/80 (32%), Positives = 44/80 (55%)

Query: 219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE 278
           Q L L NN+I+++ P  F  L +L+ L  +SN L ++P G+F     ++++    N L  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 279 LSRGLFHKLEQLLVLDLSSN 298
           + RG F  L+ L  + L +N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 29/128 (22%)

Query: 595 IPNSVEVLFINNNLIKSVKPHTFFDK-SNLARVDIYANDITKL---------DLTALR-- 642
           IP   + L++NNN I  +     FD   NL ++   +N +T +          LT L   
Sbjct: 31  IPTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 643 ---LKPVPQN-----KTLPEFYLGGNPFDCDCS-----MDWLPIINNNTSPSMERQYPKI 689
              LK +P+      K+L   YL  NP+DC+C       +W   + ++TS  M      +
Sbjct: 90  DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW---VADHTSIVMRWDGKAV 146

Query: 690 MDLDNVVC 697
            D D+  C
Sbjct: 147 NDPDSAKC 154

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           +  + L +++N +  L  G+F    ++ ++Y   N L  +  G+F KL QL  LDL+ NH
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 300 LSSNHIDETTFIGLIRLIILNLSNN 324
           L S  I    F  L  L  + L NN
Sbjct: 93  LKS--IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 29/80 (36%), Positives = 44/80 (55%)

Query: 341 QRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN 400
           QRL L NN I  +E   F  L NL  +Y + N++  I   +F+ L  L++L L++N L +
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95

Query: 401 IDSKAFKNCSALKELDLSSN 420
           I   AF N  +L  + L +N
Sbjct: 96  IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 19/131 (14%)

Query: 72  SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVL 131
             + L ++N ++ +L   VF  L NL++L  N+  L         +  G  D L +L  L
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-------AIPTGVFDKLTQLTQL 86

Query: 132 NISSSNIKSISDDVFCSLANIQTLNLSRN----SIRDIDTL--------GFAVRRASAES 179
           +++ +++KSI    F +L ++  + L  N      RDI  L           +R      
Sbjct: 87  DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAV 146

Query: 180 NSGEKIECSGG 190
           N  +  +C+G 
Sbjct: 147 NDPDSAKCAGT 157

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 5/85 (5%)

Query: 192 DLRILDLSHNKLRTL--GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
           D + L L++N++  L  G +  +     LQ L+  +N+++ I    F  L+ L  L+++ 
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVN---LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKN 274
           NHL S+P G F + + ++ IY   N
Sbjct: 91  NHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLNLSENHL 540
             + L L+ N+I ++E G F+    L  +  +SN LT I  GVF  L QL  L+L++NHL
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 95.7 bits (239), Expect = 2e-21
 Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 36/277 (12%)

Query: 210 SGITKFRRLQNLHLENNEIS--QIAPNAFVALSSLRILNISS-NHLV-SLPEGLFSSCRD 265
              T+  R+ NL L    +      P++   L  L  L I   N+LV  +P  + +    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQ 102

Query: 266 ISEIYAQKNSLV-----ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIIL 319
           +  +Y    ++       LS     +++ L+ LD S N LS   +     I  L  L+ +
Sbjct: 103 LHYLYITHTNVSGAIPDFLS-----QIKTLVTLDFSYNALSGT-L--PPSISSLPNLVGI 154

Query: 320 NLSNNELT-RIDAKTFKDLVFLQR-LDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH- 375
               N ++  I   ++     L   + +  N + G I      +  NL  + LS N +  
Sbjct: 155 TFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKI--PPTFANLNLAFVDLSRNMLEG 211

Query: 376 HITAHLFNGLYVLSKLTLSNNLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELP 433
             +    +      K+ L+ N L  ++          L  LDL +N I   +P  L++L 
Sbjct: 212 DASVLFGS-DKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 434 FLKTLDLGENQIS-KI-ENGSFKNLQQLTDLRLVDNN 468
           FL +L++  N +  +I + G+ +           +N 
Sbjct: 269 FLHSLNVSFNNLCGEIPQGGNLQR---FDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.3 bits (212), Expect = 7e-18
 Identities = 62/312 (19%), Positives = 106/312 (33%), Gaps = 56/312 (17%)

Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHL---VSLPEGLFSSCRDISEIYAQKNSL 276
                N     +  +       +  L++S  +L     +P  L                 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA---------------- 73

Query: 277 VELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIG-LIRLIILNLSNNELT-RIDAKT 333
                     L  L  L +   N+L    I     I  L +L  L +++  ++  I    
Sbjct: 74  ---------NLPYLNFLYIGGINNLVG-PIPPA--IAKLTQLHYLYITHTNVSGAIPD-F 120

Query: 334 FKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYVLSKL 391
              +  L  LD   N++ G +  +   SL NL  I    NRI   I     +   + + +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179

Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KIE 449
           T+S N L       F N + L  +DLS N +  +           + + L +N ++  + 
Sbjct: 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL- 237

Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSG----MLYELPSLEVLNLSKNKIH-QI-EIGTFEK 503
            G     + L  L L +N I     G     L +L  L  LN+S N +  +I + G    
Sbjct: 238 -GKVGLSKNLNGLDLRNNRI----YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-- 290

Query: 504 NKRLAAIRLDSN 515
            +R       +N
Sbjct: 291 -QRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 82.2 bits (204), Expect = 6e-17
 Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 38/234 (16%)

Query: 340 LQRLDLRNNSI-GYIEDNAFLS-LYNLHTIYLS-ENRIH-HITAHLFNGLYVLSKLTLSN 395
           +  LDL   ++       + L+ L  L+ +Y+   N +   I   +   L  L  L +++
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITH 110

Query: 396 NLLV-NIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQIS-KI--EN 450
             +   I          L  LD S NA+   +P ++S LP L  +    N+IS  I    
Sbjct: 111 TNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169

Query: 451 GSFKNLQQLTDLRLVDNN--------IGNLS-----------SGM----LYELPSLEVLN 487
           GSF  L   T + +  N           NL+            G          + + ++
Sbjct: 170 GSFSKL--FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 488 LSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHL 540
           L+KN +   ++G    +K L  + L +N +   +    T L  L  LN+S N+L
Sbjct: 228 LAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.0 bits (188), Expect = 7e-15
 Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 75/295 (25%)

Query: 408 NCSALKELDLSSNAI---VEIPSALSELPFLKTLDL-GENQISKIENG----SFKNLQQL 459
               +  LDLS   +     IPS+L+ LP+L  L + G N +     G    +   L QL
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPPAIAKLTQL 103

Query: 460 TDLRLVDNN--------IGNLSSGMLYELPSLEVLNLSKNKIH-QI--EIGTFEKNKRLA 508
             L +   N        +  + +        L  L+ S N +   +   I +      L 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKT--------LVTLDFSYNALSGTLPPSISSL---PNLV 152

Query: 509 AIRLDSNFLT-DINGVFTYLAQLL-WLNLSENHLVWFDYAMVPG---------NLKWLDI 557
            I  D N ++  I   +   ++L   + +S N L         G         NL ++D+
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT--------GKIPPTFANLNLAFVDL 204

Query: 558 HGNYISSLNNYYEIKDGL----SIKNLDASHNRIL-EISELSIPNSVEVLFINNNLIKSV 612
             N +       +         + + +  + N +  ++ ++ +  ++  L + NN I   
Sbjct: 205 SRNMLEG-----DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259

Query: 613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQN---KTLPEFYLGGNPFDC 664
            P        L  +++  N++            +PQ    +         N   C
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLC---------GEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 74.1 bits (183), Expect = 4e-14
 Identities = 58/298 (19%), Positives = 104/298 (34%), Gaps = 55/298 (18%)

Query: 92  SGLRNLKRLT-INTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDV---FC 147
                  R+  ++   L   K   +   P SL  L  L  L I   N  ++   +     
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPI---PSSLANLPYLNFLYIGGIN--NLVGPIPPAIA 98

Query: 148 SLANIQTLNLSRNSIR-DI-DTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
            L  +  L ++  ++   I D L                 +      L  LD S+N L  
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLS----------------QIK---TLVTLDFSYNAL-- 137

Query: 206 LGDYSG-----ITKFRRLQNLHLENNEIS-QIAPNAFVALSSL-RILNISSNHLV-SLPE 257
               SG     I+    L  +  + N IS  I P+++ + S L   + IS N L   +P 
Sbjct: 138 ----SGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 258 GLFSSCRDISEIYAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL 316
              +   +++ +   +N L  + S       +    + L+ N L+ + + +        L
Sbjct: 193 TFANL--NLAFVDLSRNMLEGDASVLFG-SDKNTQKIHLAKNSLAFD-LGK--VGLSKNL 246

Query: 317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENR 373
             L+L NN +     +    L FL  L++  N++ G I     L          + N+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ--RFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 8e-10
 Identities = 48/273 (17%), Positives = 85/273 (31%), Gaps = 73/273 (26%)

Query: 66  SFQNIYSLEELKISNCKLV--ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD 123
           S  N+  L  L I     +   +P    + L  L  L I   N+          +P  L 
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVS-------GAIPDFLS 122

Query: 124 GLRELQVLNISSSNIK-SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
            ++ L  L+ S + +  ++      SL N+  +    N I                  SG
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRI------------------SG 163

Query: 183 EKIECSGGMD--LRILDLSHNKL-----RTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
              +  G        + +S N+L      T  + +       L  + L  N +   A   
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVL 216

Query: 236 FVALSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD 294
           F +  + + ++++ N L   L +                              + L  LD
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGK--------------------------VGLSKNLNGLD 250

Query: 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
           L +N +    + +     L  L  LN+S N L 
Sbjct: 251 LRNNRIYG-TLPQ-GLTQLKFLHSLNVSFNNLC 281

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 98.3 bits (244), Expect = 4e-21
 Identities = 51/265 (19%), Positives = 93/265 (35%), Gaps = 12/265 (4%)

Query: 234 NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVL 293
            + V L  L   +++          +++      E    K+      R      EQL   
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRC 354

Query: 294 DLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI 353
           +LS    +    +  +   L  L   N     LT I       +  L  L     ++ Y 
Sbjct: 355 ELSVEKSTVLQSELESCKELQELEPENKWCL-LTII-----LLMRALDPLLYEKETLQYF 408

Query: 354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK 413
                +       +    ++     + L      +  L L++  L  +     +    + 
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVT 466

Query: 414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS 473
            LDLS N +  +P AL+ L  L+ L   +N +  ++     NL +L +L L +N +   +
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSA 524

Query: 474 S-GMLYELPSLEVLNLSKNKIHQIE 497
           +   L   P L +LNL  N + Q E
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 89.4 bits (221), Expect = 3e-18
 Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 13/230 (5%)

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
              L    +S      L      SC+++ E+  +    +     L   L+ LL    +  
Sbjct: 348 DEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
           + S         +  +R   L+   ++    ++    +   ++ L L +  +  +     
Sbjct: 407 YFS-----TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ 461

Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
           L    +  + LS NR+  +   L   L  L  L  S+N L N+D     N   L+EL L 
Sbjct: 462 LL--LVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG--VANLPRLQELLLC 516

Query: 419 SNAIVEIPS--ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
           +N + +  +   L   P L  L+L  N + + E    +  + L  +  + 
Sbjct: 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 7e-13
 Identities = 36/296 (12%), Positives = 97/296 (32%), Gaps = 6/296 (2%)

Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           +               L + +   + +               L  L   +L++ L  +  
Sbjct: 259 VCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTF 318

Query: 403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL 462
              +    + KE  L  +         +    L   +L   + + +++   ++ ++L +L
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSE-LESCKELQEL 377

Query: 463 RLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING 522
              +         ++  L  L     +      ++     +   L  +R  S FL + + 
Sbjct: 378 EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR--SKFLLENSV 435

Query: 523 VFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDA 582
           +    A +  L+L+   L    +      +  LD+  N + +L     +     ++ L A
Sbjct: 436 LKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQA 493

Query: 583 SHNRILEISELSIPNSVEVLFINNNLIKSVK-PHTFFDKSNLARVDIYANDITKLD 637
           S N +  +  ++    ++ L + NN ++             L  +++  N + + +
Sbjct: 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 9e-13
 Identities = 37/267 (13%), Positives = 75/267 (28%), Gaps = 24/267 (8%)

Query: 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
            +       + + L +L    L++    H    ++ G     +  L  +       +   
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC-WCRDSA 346

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
               L   +LS      + S L     L+ L+              + L  L   +    
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ 406

Query: 468 NIGNL---------------------SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKR 506
               L                     +S +  E   + VL+L+   +  +     E+   
Sbjct: 407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLL 464

Query: 507 LAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLN 566
           +  + L  N L  +      L  L  L  S+N L   D       L+ L +  N +    
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 567 NYYEIKDGLSIKNLDASHNRILEISEL 593
               +     +  L+   N + +   +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGI 551

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 1e-10
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 39/250 (15%)

Query: 1   MFEVPENCSWKMENESMNRISVTC-NLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLD 59
                 + S K      +R    C +     +     LS   + ++      C     L+
Sbjct: 319 RVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELE 378

Query: 60  SSITTKSFQNIYSLEELKISNC------------KLVELPVDVFSGLRNLKRLTINTRNL 107
                     I  +  L                  +  +       LR+   L  +   +
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438

Query: 108 QWDKSKKLDL------VPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS 161
           ++   + L L      V   L+ L  +  L++S + ++++      +L  ++ L  S N+
Sbjct: 439 EYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA 497

Query: 162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNL 221
           + ++D +    R                   L+ L L +N+L+       +    RL  L
Sbjct: 498 LENVDGVANLPR-------------------LQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

Query: 222 HLENNEISQI 231
           +L+ N + Q 
Sbjct: 539 NLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 7e-10
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 6/112 (5%)

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
            ++  L++ +  + V+ +     L  +  L L +N +          L  L  L   +N 
Sbjct: 441 ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA 497

Query: 861 IEYIANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFSC 911
           +E +       L  LQ L L  NRL+   A   L +   L  + L  N    
Sbjct: 498 LENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.5 bits (133), Expect = 9e-08
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 776 PMDATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLEN 834
             D   ++L       + +   + +   +  L ++++++  +       L  L+VL   +
Sbjct: 440 YADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD 495

Query: 835 NLITHFYGYEFDNLEKLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRL 885
           N + +  G    NL +L EL L  NR++  A      +   L +L L GN L
Sbjct: 496 NALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 87.5 bits (217), Expect = 2e-18
 Identities = 60/354 (16%), Positives = 111/354 (31%), Gaps = 73/354 (20%)

Query: 218 LQNLHLENNEIS-----QIAPNAFVALSSLRILNISSNHL-----VSLPEGLFSSCRDIS 267
           + +L L  N +      ++        +S+  LN+S N L       L + L +   +++
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 268 EIYAQKNSL-----VELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLS 322
            +    N L      EL + L      + VLDL  N  SS                   S
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS---------SEFKQAFS 134

Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF---LSLYN--LHTIYLSENRIH-- 375
           N   +            +  L+LR N +G    +     L+     ++++ L  N +   
Sbjct: 135 NLPAS------------ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182

Query: 376 ---HITAHLFNGLYVLSKLTLSNNLLVNIDSKAF-----KNCSALKELDLSSNAI----- 422
               +   L +    ++ L LS NLL                + +  L+L  N +     
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 423 VEIPSALSELPFLKTLDLGENQISKIENG-------SFKNLQQLTDLRLVDNNIGNLSSG 475
             +      L  L+T+ L  + +  +          +F N+Q++  +      I    S 
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 476 MLYEL-----PSLEVLNLSKNKI-----HQIEIGTFEKNKRLAAIRLDSNFLTD 519
            +  L        +V +L    +     HQ  I        L         L +
Sbjct: 303 PISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 84.0 bits (208), Expect = 3e-17
 Identities = 52/336 (15%), Positives = 104/336 (30%), Gaps = 62/336 (18%)

Query: 193 LRILDLSHNKLRTLGDYSGITKF--------RRLQNLHLENNEISQIAPNAFVAL----- 239
           +  LDLS N L          +           + +L+L  N +     +  V +     
Sbjct: 24  VTSLDLSLNNL---YS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79

Query: 240 SSLRILNISSNHL-----VSLPEGLFSSCRDISEIYAQKNSL-----VELSRGLFHKLEQ 289
           +++  LN+S N L       L + L +    I+ +    N        E  +   +    
Sbjct: 80  ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139

Query: 290 LLVLDLSSNHLSS---NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV-----FLQ 341
           +  L+L  N L     + + +        +  LNL  N L   +       +      + 
Sbjct: 140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVT 199

Query: 342 RLDLRNNSIGYIEDNAFLSL-----YNLHTIYLSENRIHHITAH----LFNGLYVLSKLT 392
            LDL  N +G         +      ++ ++ L  N +H  +      L + L  L  + 
Sbjct: 200 SLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259

Query: 393 LSNNLLVNID-------SKAFKNCSALKELDLSSNAI-----VEIPSALSELPF-LKTLD 439
           L  +++ N+          AF N   +  +D +   I     + I + + EL        
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPS 319

Query: 440 LGENQISKIENGSF-----KNLQQLTDLRLVDNNIG 470
           L    +   +             +L +       + 
Sbjct: 320 LLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 59/317 (18%), Positives = 103/317 (32%), Gaps = 66/317 (20%)

Query: 393 LSNNLLVNID----SKAFKNCSALKELDLSSNAI-----VEIPSALSELP-FLKTLDLGE 442
           ++  L ++       +       +  LDLS N +     VE+  A +  P  + +L+L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 443 NQISK-----IENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNK 492
           N +       +          +T L L  N +       L   +     ++ VL+L  N 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120

Query: 493 IHQIEIGTF-----EKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAM 547
                   F          + ++ L  N L         L Q+L              A 
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSS-DELIQIL--------------AA 164

Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGL-----SIKNLDASHNRI-----LEISEL--SI 595
           +P N+  L++ GN ++S  N  E+   L     S+ +LD S N +      E++ +  SI
Sbjct: 165 IPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 596 PNSVEVLFINNN---------LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
           PN V  L +  N         L              L    +   +++K    AL     
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--KNMSKEQCKAL-GAAF 280

Query: 647 PQNKTLPEFYLGGNPFD 663
           P  + +      G    
Sbjct: 281 PNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 49/376 (13%), Positives = 99/376 (26%), Gaps = 92/376 (24%)

Query: 69  NIYSLEELKISNCKLVELPVDVFSGLRNL-KRLTINTRNLQWDKSKKLDLVPGSLDGLRE 127
              S+  L +S   L             L + L     N+       L+           
Sbjct: 49  TPASVTSLNLSGNSLGF------KNSDELVQILAAIPANV-----TSLN----------- 86

Query: 128 LQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIEC 187
           L    +S  +   +   +      I  L+L  N      +  F   +A +   +      
Sbjct: 87  LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK--QAFSNLPAS----- 139

Query: 188 SGGMDLRILDLSHNKLRTLGDY---SGITKF-RRLQNLHLENNEISQIAPNAFVAL---- 239
                +  L+L  N L           +      + +L+L  N ++              
Sbjct: 140 -----ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 240 -SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
            +S+  L++S+N L                      S  EL+         ++ L+L  N
Sbjct: 195 PASVTSLDLSANLL-------------------GLKSYAELAYIFSSIPNHVVSLNLCLN 235

Query: 299 HLSSNHIDE--TTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDN 356
            L    ++        L  L  + L  + +  +  +  K L         N         
Sbjct: 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA----FPNIQ------- 284

Query: 357 AFLSLYNLHTIYLSENRIHHITA-HLFNGL----YVLSKLTLSNNLL-----VNIDSKAF 406
                  +  +  +   IH   +  + N +          +L N  L        + +  
Sbjct: 285 ------KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDL 338

Query: 407 KNCSALKELDLSSNAI 422
                L+E   +   +
Sbjct: 339 NIPDELRESIQTCKPL 354

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 83.6 bits (207), Expect = 3e-18
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 9/155 (5%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDL--SSNAIVEIPSALSELPFLKTLDLGENQI 445
           ++K T   + +   + +     +  ++++L      I ++ + LS L   K L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 446 SKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNK 505
            KI +     ++ L  L L  N I  +   +     +LE L +S N+I  +     EK  
Sbjct: 61  EKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLS--GIEKLV 115

Query: 506 RLAAIRLDSNFLTDINGV--FTYLAQLLWLNLSEN 538
            L  + + +N +T+   +     L +L  L L+ N
Sbjct: 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 82.8 bits (205), Expect = 5e-18
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 8/139 (5%)

Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
              + L+     + ++D  T   L   + L L  N+I  I       + NL  + L  N 
Sbjct: 25  AEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNL 81

Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS--ALSE 431
           I  I  +L      L +L +S N + ++     +    L+ L +S+N I        L+ 
Sbjct: 82  IKKIE-NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 432 LPFLKTLDLGENQISKIEN 450
           L  L+ L L  N +     
Sbjct: 139 LDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 6/118 (5%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
           L ++ + IE I +   +G+ +L++L L  NLI      +    + L EL++  N+I  ++
Sbjct: 53  LALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQIASLS 109

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
                 L++L+VL +  N++ ++   D L     L  + L  NP             +
Sbjct: 110 G--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 52/174 (29%)

Query: 442 ENQISKIENGSFKNLQQLTDLRL--VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIG 499
           ++ I   E        +   + L  +   I  + +  L  L + + L LS N I +I   
Sbjct: 8   KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-- 64

Query: 500 TFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHG 559
                                             +LS   +          NL+ L +  
Sbjct: 65  ----------------------------------SLS--GME---------NLRILSLGR 79

Query: 560 NYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
           N I  + N   + D L  + L  S+N+I  +S +    ++ VL+++NN I +  
Sbjct: 80  NLIKKIENLDAVADTL--EELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWG 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 10/135 (7%)

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
           L      +  +   + ++  +  ++L L  N I +I+      + +LRIL++  N +  +
Sbjct: 30  LHGMIPPIEKMD--ATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKI 85

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI-GLI 314
            E L +    + E++   N +  LS G+  KL  L VL +S+N +++    E   +  L 
Sbjct: 86  -ENLDAVADTLEELWISYNQIASLS-GI-EKLVNLRVLYMSNNKITN--WGEIDKLAALD 140

Query: 315 RLIILNLSNNELTRI 329
           +L  L L+ N L   
Sbjct: 141 KLEDLLLAGNPLYND 155

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 113 KKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI---DTLG 169
             ++ +  +L  L+  + L +S++NI+ IS      + N++ L+L RN I+ I   D + 
Sbjct: 35  PPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVA 92

Query: 170 FAVRRASAESNSGEKIE-CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228
             +       N    +      ++LR+L +S+NK+   G+   +    +L++L L  N +
Sbjct: 93  DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

Query: 229 SQIAP 233
                
Sbjct: 153 YNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 23/162 (14%)

Query: 268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNEL 326
           E++     + ++   L   L+    L LS+N++   + +      G+  L IL+L  N +
Sbjct: 29  ELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISSLS-----GMENLRILSLGRNLI 82

Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--AHLFNG 384
            +I+         L+ L +  N I  +       L NL  +Y+S N+I +      L   
Sbjct: 83  KKIE-NLDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKL-AA 138

Query: 385 LYVLSKLTLSNNLLVNIDS----------KAFKNCSALKELD 416
           L  L  L L+ N L N             +  K    LK+LD
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 15/134 (11%)

Query: 812 QIEVILNQTFNGLSSLQV--LHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTF 869
            I +   +     +  +   LH     I          L+    L L  N IE I++   
Sbjct: 10  AIRIFEERKSVVATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKISS--L 66

Query: 870 NALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSC-----SCATLQELQTWII 924
           + + +L++L L  N +K     D   ++ L ++++  N  +          L+ L  ++ 
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADT-LEELWISYNQIASLSGIEKLVNLRVL--YM- 122

Query: 925 DNSNKVKDGLDISC 938
            ++NK+ +  +I  
Sbjct: 123 -SNNKITNWGEIDK 135

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 783 YLDGNTFKTIPNHVFIGRKNML-SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFY 841
            L  N  K I N       + L  L+++ +QI  +       L +L+VL++ NN IT++ 
Sbjct: 76  SLGRNLIKKIEN--LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWG 131

Query: 842 GYEF-DNLEKLSELYLQENRI 861
             +    L+KL +L L  N +
Sbjct: 132 EIDKLAALDKLEDLLLAGNPL 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 86.7 bits (214), Expect = 4e-18
 Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 54/188 (28%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C         ++ + C+          +P                           
Sbjct: 1   CPDACCPH-----GSSGLRCTRDGALDSLHHLP--------------------------- 28

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLE-NNLITHFYGYEFDNLEKLSELYLQENRIE 862
                              G  +L  L++E    + H    +   L +L  L + ++ + 
Sbjct: 29  -------------------GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
           ++A   F+    L  L L  N L+S     +   S L+++ L  NP  CSCA L+ LQ W
Sbjct: 70  FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA-LRWLQRW 127

Query: 923 IIDNSNKV 930
             +    V
Sbjct: 128 EEEGLGGV 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 81.3 bits (200), Expect = 2e-16
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDL-GENQISKIENGSFKNLQQLTDLRLVDN 467
                 L  + +  ++    L     L  L +  +  +  +E    + L +L +L +V +
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT 518
            +  ++    +  P L  LNLS N +  +   T +    L  + L  N L 
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 79.8 bits (196), Expect = 8e-16
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 308 TTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHT 366
               G   L  L +     L  ++ +  + L  L+ L +  + + ++  +AF     L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 367 IYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
           + LS N +  ++     GL  L +L LS N
Sbjct: 85  LNLSFNALESLSWKTVQGLS-LQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 77.1 bits (189), Expect = 5e-15
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 3/114 (2%)

Query: 262 SCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNL 321
                S +   ++  ++         E L  L + +      H++     GL  L  L +
Sbjct: 6   CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTI 63

Query: 322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
             + L  +    F     L RL+L  N++  +       L +L  + LS N +H
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 75.9 bits (186), Expect = 1e-14
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 332 KTFKDLVFLQRLDLR-NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK 390
                   L  L +     + ++E      L  L  + + ++ +  +    F+    LS+
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV 423
           L LS N L ++  K  +  S L+EL LS N + 
Sbjct: 85  LNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 72.1 bits (176), Expect = 3e-13
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 357 AFLSLYNLHTIYLSENR-IHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
                 NL  +Y+   + + H+      GL  L  LT+  + L  +   AF     L  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 416 DLSSNAIVEIPSALSELPFLKTLDLGEN 443
           +LS NA+  +     +   L+ L L  N
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 192 DLRILDLSHNK-LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN 250
           +L  L + + + L+ L     +     L+NL +  + +  +AP+AF     L  LN+S N
Sbjct: 32  NLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 251 HLVSLPEGLFSSCRDISEIYAQKNSLV 277
            L SL          + E+    N L 
Sbjct: 91  ALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 576 SIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDI 628
           ++  L   + + L+     +             L I  + ++ V P  F     L+R+++
Sbjct: 32  NLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK 688
             N +  L    +      Q  +L E  L GNP  C C++ WL          +  Q  +
Sbjct: 88  SFNALESLSWKTV------QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 689 IMDLDNVVCKM 699
                 +    
Sbjct: 142 CHGQGPLAHMP 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 2e-10
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 187 CSGGMDLRILDLSH-NKLRTLGDYSGITKFRRLQNLHLE-NNEISQIAPNAFVALSSLRI 244
             G   LR       + L        +     L  L++E    +  +       L  LR 
Sbjct: 7   PHGSSGLRCTRDGALDSLH------HLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
           L I  + L  +    F     +S +    N+L  LS      L  L  L LS N L
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 6e-10
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 4/96 (4%)

Query: 233 PNAFVALSSLRILNISSN-HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL 291
            +      +L  L I +  HL  L         ++  +   K+ L  ++   FH   +L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT 327
            L+LS N L S  +   T  GL  L  L LS N L 
Sbjct: 84  RLNLSFNALES--LSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 2e-07
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 71  YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQV 130
           +    L+ +    ++       G  NL  L I  +           L    L GL EL+ 
Sbjct: 8   HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQH------LELRDLRGLGELRN 60

Query: 131 LNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDI 165
           L I  S ++ ++ D F     +  LNLS N++  +
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 477 LYELPSLEVLNLSKNK-IHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLLWLN 534
           L    +L  L +   + +  +E+        L  + +  + L  +    F +  +L  LN
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 535 LSENHLVWF-DYAMVPGNLKWLDIHGN 560
           LS N L       +   +L+ L + GN
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 60  SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP 119
             +  +  + +  L  L I    L  +  D F     L RL ++   L+        L  
Sbjct: 45  QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-------LSW 97

Query: 120 GSLDGLRELQVLNISS 135
            ++ GL  LQ L +S 
Sbjct: 98  KTVQGLS-LQELVLSG 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
           L+   I     +         +L L    +  I++           +D S N I ++   
Sbjct: 4   LTAELIEQAAQY--TNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL-DG 59

Query: 429 LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLN 487
              L  LKTL +  N+I +I  G  + L  LT+L L +N++  L     L  L SL  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 488 LSKNKIHQIE 497
           + +N +   +
Sbjct: 120 ILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 48/178 (26%)

Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
           + L+  L+       + N    +ELDL    I  I +  + L     +D  +N+I K++ 
Sbjct: 2   VKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

Query: 451 GSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAI 510
                                        L  L+ L ++ N+I +I  G  +    L  +
Sbjct: 60  --------------------------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93

Query: 511 RLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
            L +N L ++  +   LA L                    +L +L I  N +++  +Y
Sbjct: 94  ILTNNSLVELGDL-DPLASLK-------------------SLTYLCILRNPVTNKKHY 131

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.4 bits (165), Expect = 7e-13
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 27/169 (15%)

Query: 130 VLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
           ++ +++  I+  +   + +    + L+L    I  I+ LG  + +               
Sbjct: 1   MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQ--------------- 43

Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
                 +D S N++R L    G    RRL+ L + NN I +I      AL  L  L +++
Sbjct: 44  ---FDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 250 NHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVLD 294
           N LV L +    +S + ++ +   +N +         + +K+ Q+ VLD
Sbjct: 98  NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 284 FHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQR 342
           +    +   LDL    +    ++  T    L +   ++ S+NE+ ++D   F  L  L+ 
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLGAT----LDQFDAIDFSDNEIRKLD--GFPLLRRLKT 68

Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--AHLFNGLYVLSKLTLSNNLLVN 400
           L + NN I  I +    +L +L  + L+ N +  +     L + L  L+ L +  N + N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLAS-LKSLTYLCILRNPVTN 127

Query: 401 ID---SKAFKNCSALKELDLSSNAIVEIPSA 428
                         ++ LD     + E   A
Sbjct: 128 KKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 8/132 (6%)

Query: 244 ILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSN 303
           ++ +++  +    +  +++     E+  +   +  +   L   L+Q   +D S N +   
Sbjct: 1   MVKLTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK- 56

Query: 304 HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LY 362
            +D   F  L RL  L ++NN + RI     + L  L  L L NNS+  + D   L+ L 
Sbjct: 57  -LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 363 NLHTIYLSENRI 374
           +L  + +  N +
Sbjct: 114 SLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 806 LYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIA 865
           L +   +I VI N     L     +   +N I    G  F  L +L  L +  NRI  I 
Sbjct: 24  LDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIG 80

Query: 866 NGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
            G   AL  L  L L  N L      D L +   L  + +  NP +
Sbjct: 81  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 8/131 (6%)

Query: 533 LNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
           + L+   +            + LD+ G  I  + N     D      +D S N I ++  
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQF--DAIDFSDNEIRKLDG 59

Query: 593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKL-DLTALRLKPVPQNKT 651
             +   ++ L +NNN I  +         +L  + +  N + +L DL  L        K+
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA-----SLKS 114

Query: 652 LPEFYLGGNPF 662
           L    +  NP 
Sbjct: 115 LTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 66  SFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGL 125
            + N     EL +   K+  +  ++ + L     +     +   ++ +KLD        L
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAI-----DFSDNEIRKLD----GFPLL 63

Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
           R L+ L ++++ I  I + +  +L ++  L L+ NS+ ++  L
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL 106

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 80.4 bits (198), Expect = 2e-15
 Identities = 57/463 (12%), Positives = 137/463 (29%), Gaps = 67/463 (14%)

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFA----- 171
            L G     + N+   N           ++     +++++  R  + D+D    A     
Sbjct: 79  KLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD 138

Query: 172 ------VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF----RRLQNL 221
                 + + S  +  G     +    ++ L +  +          + +       L+ L
Sbjct: 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG-KWLHELAQHNTSLEVL 197

Query: 222 HLENNEISQIAPNAFVAL----SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV 277
           +    E ++I+P     +     SL  + +    ++ L  G F +  ++ E      +  
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNED 256

Query: 278 ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL-TRIDAKTFKD 336
                 +  L     L          +     F    ++  L+L    L T       + 
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK 316

Query: 337 LVFLQRLDLRNNSIGYIEDNAFLSL----YNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
              L+ L+ RN     I D     L      L  + +                    +  
Sbjct: 317 CPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQ--------GMEDEEGL 364

Query: 393 LSNNLLVNIDSKAFKNCSALKELDLS-----SNAIVEIPSALSELPFLKTLDLGENQISK 447
           +S   L+ +     + C  L+ + +      + ++  I + L  L   + + L  ++  +
Sbjct: 365 VSQRGLIAL----AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL--DREER 418

Query: 448 IENGSF--------KNLQQLTDLRLVDN--NIGNLSSGMLYEL-PSLEVLNLSKNKIHQI 496
           I +              ++L           + +L    + +  P++  + L        
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478

Query: 497 EIGTFEKN-KRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLS 536
            +  F +    L  + +     ++  I    T L  L +L + 
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.9 bits (176), Expect = 7e-13
 Identities = 55/412 (13%), Positives = 125/412 (30%), Gaps = 48/412 (11%)

Query: 50  IDCDATVLLDSSITTKSFQNIYSLEELKISNCKLV--ELPVDVFSGLRNLKRLTINTRNL 107
           +     ++ D  +   +      LE LK+  C     +  + + +  R +K L +   + 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 108 QWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIR 163
                K L  +         L+VLN   +    IS     ++A    ++ ++ +    I 
Sbjct: 177 SEKDGKWLHELA---QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI- 232

Query: 164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF-------- 215
            ++ +GF    A+ E   G  +    GM  + ++L   +       S +           
Sbjct: 233 -LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF 291

Query: 216 -RRLQNLHLENNE-ISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK 273
             +++ L L      ++          +L +L   +       E L   C+ +  +  ++
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 274 NSLVELSRGLFHKLEQLLVLDLSSN-------HLSSNHIDETTFIGL---------IRLI 317
            +  +        + Q  ++ L+          +  + I   +   +          RL+
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

Query: 318 ILNLSNNELTRIDAKTFKDLV----FLQRLDLRNNSIGYIEDNAFLSLY----NLHTIYL 369
           +L+              + L+     L+R        G + D     +     N+  + L
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG-LTDLGLSYIGQYSPNVRWMLL 470

Query: 370 SENRIHHIT-AHLFNGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKELDLSS 419
                          G   L KL +           A      +L+ L +  
Sbjct: 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.6 bits (139), Expect = 2e-08
 Identities = 37/269 (13%), Positives = 78/269 (28%), Gaps = 33/269 (12%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
            + +    +     L    F + R +      + ++  L    +       V ++S+N  
Sbjct: 54  HVTMALCYTATPDRLSRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNN-- 110

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVF--LQRLDLRNNSIGYIEDNAF 358
                       L +L  ++     ++ +D           L+ L L   S      +  
Sbjct: 111 ------------LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS--GFTTDGL 156

Query: 359 LSL----YNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKA----F 406
           LS+      + T+ + E+            L      L  L         I  K      
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA 216

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
           +NC +L  + +    I+E+         L+    G           + NL     L  + 
Sbjct: 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276

Query: 467 -NNIGNLSSGMLYEL-PSLEVLNLSKNKI 493
            + +G     +L+     +  L+L    +
Sbjct: 277 LSYMGPNEMPILFPFAAQIRKLDLLYALL 305

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 74.0 bits (182), Expect = 3e-15
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 12/145 (8%)

Query: 323 NNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF 382
           + EL        ++LV    LD   ++ G IE        NL  + L    +  ++    
Sbjct: 15  HLELRNRTPAAVRELV----LDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISVSN--L 67

Query: 383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS--ALSELPFLKTLDL 440
             L  L KL LS N +        +    L  L+LS N + +I +   L +L  LK+LDL
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 441 GENQISKIEN---GSFKNLQQLTDL 462
              +++ + +     FK L QLT L
Sbjct: 128 FNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 70.5 bits (173), Expect = 4e-14
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)

Query: 388 LSKLTLSNNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
           + +L L N    +            L+ L L +  ++ + S L +LP LK L+L EN+I 
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIF 84

Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIE 497
              +   + L  LT L L  N + ++S+   L +L  L+ L+L   ++  + 
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 48/164 (29%)

Query: 407 KNCSALKE--LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
           +  +A++E  LD   +   +I    +E   L+ L L    +  + N              
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------- 66

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
                       L +LP L+ L LS+N+I        EK   L  + L  N L DI+ + 
Sbjct: 67  ------------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL- 113

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
             L +L                     LK LD+    +++LN+Y
Sbjct: 114 EPLKKL-------------------ECLKSLDLFNCEVTNLNDY 138

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI 861
             L L    S    I   T     +L+ L L N  +          L KL +L L ENRI
Sbjct: 27  RELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRI 83

Query: 862 EYIANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
               +     L +L  L L GN+LK     + L     L+ + L N   +
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 9/121 (7%)

Query: 180 NSGEKIECSGGM--DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
           ++  KIE       +L  L L +  L ++   S + K  +L+ L L  N I         
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 238 ALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVL 293
            L +L  LN+S N L  +           +  +      +  L+     +F  L QL  L
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

Query: 294 D 294
           D
Sbjct: 153 D 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 5/94 (5%)

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
           GL  +   L  L L +  L S  +       L +L  L LS N +        + L  L 
Sbjct: 43  GLTAEFVNLEFLSLINVGLIS--VS--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98

Query: 342 RLDLRNNSIGYIEDNAFLS-LYNLHTIYLSENRI 374
            L+L  N +  I     L  L  L ++ L    +
Sbjct: 99  HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 9/134 (6%)

Query: 220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL 279
            L    +   +I         +L  L++ +  L+S+   L      + ++   +N +   
Sbjct: 30  VLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGG 86

Query: 280 SRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRID---AKTFK 335
              L  KL  L  L+LS N L   + ++      L  L  L+L N E+T ++      FK
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEP--LKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 336 DLVFLQRLDLRNNS 349
            L  L  LD  +  
Sbjct: 145 LLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 25/155 (16%)

Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
           +D+      ++ N +   +++L  L    +N G +  G+  E  +LE L+L    +  + 
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISVS 65

Query: 498 IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI 557
                K  +L  + L  N +                 L+E             NL  L++
Sbjct: 66  N--LPKLPKLKKLELSENRIFGGLD-----------MLAEKLP----------NLTHLNL 102

Query: 558 HGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE 592
            GN +  ++    +K    +K+LD  +  +  +++
Sbjct: 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 68  QNIYSLEELKISNCKLVELPVD-VFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
           +   ++ EL + NCK  +  ++ + +   NL+ L++    L       +     +L  L 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVS----NLPKLP 71

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
           +L+ L +S + I    D +   L N+  LNLS N ++DI TL
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL 113

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 6/114 (5%)

Query: 549 PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL 608
           P  ++ L +     +         + ++++ L   +  ++ +S L     ++ L ++ N 
Sbjct: 23  PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR 82

Query: 609 IKSVKPHTFFDKSNLARVDIYANDITKL-DLTALRLKPVPQNKTLPEFYLGGNP 661
           I            NL  +++  N +  +  L  L+     + + L    L    
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK-----KLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
            L      ++ N        +  L ++ ++I   L+     L +L  L+L  N +     
Sbjct: 55  SLINVGLISVSN--LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112

Query: 843 YE-FDNLEKLSELYLQENRIEYIAN---GTFNALISLQVL 878
            E    LE L  L L    +  + +     F  L  L  L
Sbjct: 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 388 LSKLTLSNNLLVNIDSKA-FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS 446
           + +L L N+       +        L+ L   +  +  I + L +L  LK L+L +N++S
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVS 77

Query: 447 KIENGSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIE 497
                  +    LT L L  N I +LS+   L +L +L+ L+L   ++  + 
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 314 IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR 373
           ++ ++L+ S +   +++  T  +   L+ L   N  +  I +     L  L  + LS+NR
Sbjct: 19  VKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75

Query: 374 IHHITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVEIP----SA 428
           +      L      L+ L LS N + ++ + +  K    LK LDL +  +  +     + 
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENV 135

Query: 429 LSELPFLKTLD 439
              LP L  LD
Sbjct: 136 FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 48/164 (29%)

Query: 407 KNCSALKE--LDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
           +  S +KE  LD S +   ++     E   L+ L      ++ I N     L +L  L L
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71

Query: 465 VDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
            DN +      +  + P+L  LNLS NKI  +                            
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST-------------------------I 106

Query: 525 TYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNY 568
             L +L                    NLK LD+    +++LN+Y
Sbjct: 107 EPLKKL-------------------ENLKSLDLFNCEVTNLNDY 131

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 4/108 (3%)

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
           L L  + S    +   T +    L+ L   N  +T         L KL +L L +NR+  
Sbjct: 22  LVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNRVSG 78

Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFD-LNTNSMLRKVYLGNNPFS 910
                     +L  L L GN++K     + L     L+ + L N   +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 179 SNSGEKIECSGGMD-LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV 237
           SN G+    +   + L  L   +  L ++   + + K  +L+ L L +N +S        
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAE 85

Query: 238 ALSSLRILNISSNHLVSLPE-GLFSSCRDISEIYAQKNSLVELS---RGLFHKLEQLLVL 293
              +L  LN+S N +  L          ++  +      +  L+     +F  L QL  L
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

Query: 294 D 294
           D
Sbjct: 146 D 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFL 340
            GL  + E+L  L   +  L+S  I       L +L  L LS+N ++       +    L
Sbjct: 35  EGLTDEFEELEFLSTINVGLTS--IAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 341 QRLDLRNNSIGYIEDNAFLS-LYNLHTIYLSEN 372
             L+L  N I  +     L  L NL ++ L   
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 54.7 bits (132), Expect = 8e-09
 Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 9/132 (6%)

Query: 218 LQNLHLENNEISQIA-PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSL 276
           ++ L L+N+  ++            L  L+  +  L S+   L      + ++    N +
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRV 76

Query: 277 VELSRGLFHKLEQLLVLDLSSNHLSS-NHIDETTFIGLIRLIILNLSNNELTRID---AK 332
                 L  K   L  L+LS N +   + I+      L  L  L+L N E+T ++     
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTNLNDYREN 134

Query: 333 TFKDLVFLQRLD 344
            FK L  L  LD
Sbjct: 135 VFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 549 PGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL 608
           P ++K L +  +  +         +   ++ L   +  +  I+ L   N ++ L +++N 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR 75

Query: 609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP 661
           +            NL  +++  N I  L      ++P+ + + L    L    
Sbjct: 76  VSGGLEVLAEKCPNLTHLNLSGNKIKDLS----TIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 68  QNIYSLEELKISNCKLVELPV-DVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
           +    ++EL + N +  E  +  +      L+ L     +        +     +L  L 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFL-----STINVGLTSIA----NLPKLN 64

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTL 168
           +L+ L +S + +    + +     N+  LNLS N I+D+ T+
Sbjct: 65  KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 8/104 (7%)

Query: 783 YLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG 842
                   +I N        +  L ++++++   L        +L  L+L  N I     
Sbjct: 48  STINVGLTSIAN--LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105

Query: 843 YE-FDNLEKLSELYLQENRIEYIAN---GTFNALISLQVLQLDG 882
            E    LE L  L L    +  + +     F  L  L    LDG
Sbjct: 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY--LDG 147

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 38/291 (13%), Positives = 83/291 (28%), Gaps = 55/291 (18%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVF--------LQRLDLRNNSIGYIEDNAFLS-LYNLHT 366
           L  LNL+   +T +       +          L  ++L +  +        L        
Sbjct: 74  LRQLNLAGVRMTPVKCTV---VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 367 IYLSENRI-----HHITAHLFNGLYVLSKLTLSNNLLVNID----SKAFKNCSALKELDL 417
           + L  N +       +   L +    ++ L LSNN L         +     +++  L L
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSL 190

Query: 418 SSNAI-----VEIPSALSELPFLKTLDLGENQISKIENG------SFKNLQQLTDLRLVD 466
               +       + + L     L+ L++  N     +        + +    L  L L  
Sbjct: 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG--DTAALALARAAREHPSLELLHLYF 248

Query: 467 NNIGNLSSGMLYE-------LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD 519
           N + +    +L +          + V       +      +   +  L+ ++ + N    
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV------SEYWSVILSEVQRNLNSWDR 302

Query: 520 INGVFTYLAQLLWLNLSENHLVWF------DYAMVPGNLKWLDIHGNYISS 564
                    +LL  +L ++               V G ++ L        S
Sbjct: 303 ARVQRH--LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGS 351

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 61/395 (15%), Positives = 115/395 (29%), Gaps = 99/395 (25%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL 252
           L        KL  LG    +     L +L       +Q    +   LSSLR LN++   +
Sbjct: 28  LENAQAIKKKLGKLGR-QVLPPSELLDHLFFHYEFQNQRF--SAEVLSSLRQLNLAGVRM 84

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
              P      C  ++ +             L      L  ++L+S  L           G
Sbjct: 85  --TPVK----CTVVAAV-------------LGSGRHALDEVNLASCQLDP--------AG 117

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY--------NL 364
           L  L+ + L                   ++L L+ NS+G     A   L          +
Sbjct: 118 LRTLLPVFLR-----------------ARKLGLQLNSLG---PEACKDLRDLLLHDQCQI 157

Query: 365 HTIYLSENRIHHITA-HLFNGLYV---LSKLTLSNNLL----VNIDSKAFKNCSALKELD 416
            T+ LS N +       L  GL     ++ L+L +  L    + + +        L+EL+
Sbjct: 158 TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELN 217

Query: 417 LSSNAI-----VEIPSALSELPFLKTLDLGENQIS-------KIENGSFKNLQQLTDLRL 464
           ++ N       + +  A  E P L+ L L  N++S       +   G+ +   ++     
Sbjct: 218 VAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277

Query: 465 VDNNIGN---------------LSSGMLYELPSLEVLNLSKNKIHQ---IEIGTF-EKNK 505
               +                      +     L + +L  ++                 
Sbjct: 278 EGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG 337

Query: 506 RLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHL 540
            + A+          +G   +           +H 
Sbjct: 338 EVRALLEQLGSSGSPSGS--WSHPQFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 42/252 (16%), Positives = 82/252 (32%), Gaps = 45/252 (17%)

Query: 122 LDGLRELQVLNISSSNI-----KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS 176
           L      + L +  +++     K + D +      I TL LS N +              
Sbjct: 122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM---EG 178

Query: 177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDY------SGITKFRRLQNLHLENNEIS- 229
              N+           +  L L H     LGD       + + + R+LQ L++  N    
Sbjct: 179 LAGNTS----------VTHLSLLHTG---LGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225

Query: 230 ----QIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH 285
                +A  A     SL +L++  N L    EG     + + ++         +   L  
Sbjct: 226 TAALALA-RAAREHPSLELLHLYFNEL--SSEG----RQVLRDLGGAAEGGARVVVSLTE 278

Query: 286 --KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT----RIDAKTFKDLVF 339
              + +   + LS    + N  D       + L++ +L ++          A+  +    
Sbjct: 279 GTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGE 338

Query: 340 LQRLDLRNNSIG 351
           ++ L  +  S G
Sbjct: 339 VRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 50/362 (13%), Positives = 104/362 (28%), Gaps = 73/362 (20%)

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
           GL     + + L      + +    E       + I   L       +      D     
Sbjct: 5   GLLSAHNRAV-LAQLGCPIKNLDALEN-----AQAIKKKLGKLGRQVLPPSELLDH-LFF 57

Query: 342 RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL--- 398
             + +N      E  + L   NL  + ++  +   + A L +G + L ++ L++  L   
Sbjct: 58  HYEFQNQRF-SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA 116

Query: 399 -VNIDSKAFKNC--------------------------SALKELDLSSNAI-----VEIP 426
            +      F                               +  L LS+N +       + 
Sbjct: 117 GLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM 176

Query: 427 SALSELPFLKTLDLGENQISKIENG------SFKNLQQLTDLRLVDNNIGNLS----SGM 476
             L+    +  L L    +   + G           +QL +L +  N  G+ +    +  
Sbjct: 177 EGLAGNTSVTHLSLLHTGLG--DEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234

Query: 477 LYELPSLEVLNLSKNKIHQI-------EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQ 529
             E PSLE+L+L  N++            G  E   R+     +   +++        + 
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW------SV 288

Query: 530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL----SIKNLDASHN 585
           +L       +            L   D+  +  ++LN  +     L     ++ L     
Sbjct: 289 ILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNP-WRKAQLLRVEGEVRALLEQLG 347

Query: 586 RI 587
             
Sbjct: 348 SS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.5 bits (108), Expect = 9e-05
 Identities = 44/348 (12%), Positives = 87/348 (25%), Gaps = 58/348 (16%)

Query: 369 LSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS--NAIVEIP 426
           L       + A L   +  L  L  +  +   +     +     + LD            
Sbjct: 6   LLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQR 65

Query: 427 SALSELPFLKTLDLGENQIS-----KIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYE-L 480
            +   L  L+ L+L   +++      +          L ++ L    +       L    
Sbjct: 66  FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 481 PSLEVLNLSKNKI-----HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL---- 531
                L L  N +       +         ++  +RL +N LT   GV   L + L    
Sbjct: 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA-GV-AVLMEGLAGNT 183

Query: 532 ---WLNLSENHL----VWFDYAMVPGN--LKWLDIHGNYISSLNNYYEIKDGL----SIK 578
               L+L    L    +    A +  N  L+ L++  N          +        S++
Sbjct: 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD-TAALALARAAREHPSLE 242

Query: 579 NLDASHNRI-----LEISELSIPNS----VEVLFINNNLI---------------KSVKP 614
            L    N +       + +L         V V       +                S   
Sbjct: 243 LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDR 302

Query: 615 HTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPF 662
                   L   D+  +    L+      + +     +          
Sbjct: 303 ARVQRHLELLLRDLEDSRGATLNPWRK-AQLLRVEGEVRALLEQLGSS 349

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 3e-12
 Identities = 61/511 (11%), Positives = 151/511 (29%), Gaps = 61/511 (11%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSL---- 122
            +    +  +++           V  G        I   +  +   +++ L    +    
Sbjct: 62  IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 123 -----DGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVR 173
                   +  +VL +S  + +  S D   ++A    N++ L+L  + + D+     +  
Sbjct: 122 LELIAKSFKNFKVLVLS--SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179

Query: 174 RASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP 233
             +  S     I C         ++S + L  L           L++L L      +   
Sbjct: 180 PDTYTSLVSLNISCLAS------EVSFSALERLVTRC-----PNLKSLKLNRAVPLEKLA 228

Query: 234 NAFVALSSLRILNISS------NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKL 287
                   L  L            + S      S C+++  +    +++      ++   
Sbjct: 229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288

Query: 288 EQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLR 346
            +L  L+LS   + S  +         +L  L + +  +     +        L+ L + 
Sbjct: 289 SRLTTLNLSYATVQSYDL-VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHI-----------TAHLFNGLYVLSKLTLSN 395
            +    +E N  L+   L ++ +   ++  +              +      +++  L  
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

Query: 396 NLLVNIDSKAF-----------KNCSALKELDLSSNAIVEIPSALSE-LPFLKTLDLGEN 443
                 D               ++C  L+ L LS     ++   +      ++ L +   
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466

Query: 444 QISKIENGSF-KNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIEIGTF 501
             S +           L  L + D   G+ +      +L ++  L +S   +        
Sbjct: 467 GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526

Query: 502 -EKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
            +K  +L    +D     D       + ++ 
Sbjct: 527 GQKMPKLNVEVIDERGAPDSRPESCPVERVF 557

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 60.3 bits (146), Expect = 3e-09
 Identities = 71/480 (14%), Positives = 133/480 (27%), Gaps = 101/480 (21%)

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLA----NIQTLNLSRNSIRDIDTLGFAVRRAS 176
            L G       N+              +++     ++ + L R  + D      A     
Sbjct: 72  ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKS--- 128

Query: 177 AESNSGEKIECSGGMDLRILDLSH-NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA 235
                            ++L LS      T G  +     R L+ L L  +++  ++ + 
Sbjct: 129 ----------FKN---FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175

Query: 236 FVALS----SLRILNISSNHLVSLPEGL---FSSCRDISEIYAQKNSLVELSRGLFHKLE 288
                    SL  LNIS          L    + C ++  +   +   +E    L  +  
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 289 QLLVLDLSS---------------------NHLSSNHIDETTFIGLI-------RLIILN 320
           QL  L                              +   +     L        RL  LN
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 321 LSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAFLSL----YNLHTIYLS----- 370
           LS   +   D          LQRL + +     IED     L     +L  + +      
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY----IEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 371 -ENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKAF----KNCSALKELDLSSNA 421
                  +T      +  G   L  +         + + A     +N   +    L    
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLESVLYFCR---QMTNAALITIARNRPNMTRFRLCI-- 406

Query: 422 IVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLR--LVDNNIGNLSSGMLYE 479
              I     +   L+ LD+G   I +      K+L++L  L   L D     + +     
Sbjct: 407 ---IEPKAPDYLTLEPLDIGFGAIVE----HCKDLRRL-SLSGLLTDKVFEYIGTY---- 454

Query: 480 LPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLS 536
              +E+L+++      + +         L  + +      D  +    + L  +  L +S
Sbjct: 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 38/266 (14%), Positives = 93/266 (34%), Gaps = 37/266 (13%)

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN----NEISQIAPNAFVALSSLRILNIS 248
           L++LD+S+ +++     +G     +   +++ N       S +         +L  + +S
Sbjct: 51  LKVLDISNAEIKMYSGKAGTYPNGKF-YIYMANFVPAYAFSNVVNGVTKGKQTLEKVILS 109

Query: 249 SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN--HLSSNHID 306
              + ++ +  F  C ++     +K +   L           + + L S+  +   N  +
Sbjct: 110 EK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE 168

Query: 307 ETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY---- 362
              FI    L         + +++ +  K  +  + ++      G +++  F  +     
Sbjct: 169 HFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINF-LTIEGKLDNADFKLIRDYMP 226

Query: 363 NLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL-----------------------LV 399
           NL ++ +S+     I    F     L K+ L +NL                       + 
Sbjct: 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVT 286

Query: 400 NIDSKAFKNCSALKELDLSSNAIVEI 425
            I+  AF  C  L+ +  + + I  +
Sbjct: 287 AIEFGAFMGCDNLRYVLATGDKITTL 312

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 15/217 (6%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY----IEDNAFLSLYNLHTIYLSE 371
           L +L++SN E+     K          + + N    Y    + +        L  + LSE
Sbjct: 51  LKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE 110

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
             I +I    F G   L    +      N+  +A  +      + L S+      +    
Sbjct: 111 K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH 169

Query: 432 LPF-----LKTLDLGENQISKIENGSFKNLQQLTDLRL--VDNNIGNLS-SGMLYELPSL 483
             F     L+T       + K+E+   K   Q  D+    ++  + N     +   +P+L
Sbjct: 170 FAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228

Query: 484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
             L++SK     I   TF + K L  I+L  N L  I
Sbjct: 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTI 264

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 41/290 (14%), Positives = 87/290 (30%), Gaps = 54/290 (18%)

Query: 133 ISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMD 192
           + +    ++ + V      ++ + LS   I++I+   F                C     
Sbjct: 84  VPAYAFSNVVNGVTKGKQTLEKVILS-EKIKNIEDAAFK--------------GCDN--- 125

Query: 193 LRILDLSHNKLRTLGDYSGITKFRRL---QNLHLENNEISQIAPNAFVALSSLRILNISS 249
           L+I  +       L   +       +             ++    AF+    L       
Sbjct: 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVG 185

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELS----RGLFHKLEQLLVLDLSSNHLSSNHI 305
             +  L + +  +     +I        +L     + +   +  L+ LD+S  + ++  I
Sbjct: 186 A-MGKLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT--I 241

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
            + TF     L+ + L +N L  I  + F +   L        S+  IE  AF+   NL 
Sbjct: 242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR 300

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL 415
            +                       L   +  +  +  + F N    K +
Sbjct: 301 YV-----------------------LATGDK-ITTLGDELFGNGVPSKLI 326

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 1e-10
 Identities = 108/674 (16%), Positives = 202/674 (29%), Gaps = 178/674 (26%)

Query: 584  HNRILEISELSIPNS--VEVL---FINNNLIKSVK--PHTFFDKSNLARVDIYANDITKL 636
            H+   E  E        + V    F++N   K V+  P +   K  +  + +  + ++  
Sbjct: 5    HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 637  D--LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL--PIINNNTSPSMERQ-YPKIMD 691
                  L  K   Q + + +F       +      +L  PI      PSM  + Y +  D
Sbjct: 65   LRLFWTLLSK---QEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 692  -LDN---VVCKMTYSRGSTHLPASEAA----PSQYLCPYDIH--------CFALCHCCEF 735
             L N   V  K   SR   +L   +A     P++ +    I           AL   C  
Sbjct: 118  RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVLGSGKTWVAL-DVCLS 173

Query: 736  DACDCEMTCP------KNCSCFHD-----QNWNTNVVDCSEQQISTVPPRIPMDATHVYL 784
                C+M         KNC+         Q     + D +    S     I +       
Sbjct: 174  YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRI----- 227

Query: 785  DGNTFKTIPNHVFIGRKNMLSLY----VNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
              ++ +     +   +     L     V N+  +      FN   S ++L     L T F
Sbjct: 228  --HSIQAELRRLLKSKPYENCLLVLLNVQNA--KAW--NAFNL--SCKIL-----LTTRF 274

Query: 841  YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SML 899
                    + LS        +++ +      L   +V  L          + L+     L
Sbjct: 275  KQ----VTDFLSAATTTHISLDHHSMT----LTPDEVKSL-------LLKY-LDCRPQDL 318

Query: 900  RKVYLGNNPFSCSC--ATLQE----LQTWIIDNSNKVKDGLDISCVIDESSPPIRKEIDL 953
             +  L  NP   S    ++++       W   N +K+   ++ S  ++   P   ++   
Sbjct: 319  PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRK--- 373

Query: 954  NSTTCTEYYATSSVIASIMVSD-YLPFMIITFL-----MFLVFLILIIFM---FVFKDPF 1004
                    +       S+     ++P ++++ +        V +++        V K P 
Sbjct: 374  -------MF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 1005 RVWLYTKYGIRLFNFKATSSKHFGEDREKLPKDEEFVL-QSIVAELEHGNPSYQLCLHYR 1063
                 +   I L                K+  + E+ L +SIV   +H N          
Sbjct: 423  E-STISIPSIYL--------------ELKVKLENEYALHRSIV---DHYNIPKTFDSDDL 464

Query: 1064 DLPHHSPYLQQ----HTTSPVVIEAAEASRRVILVLTKNFLQ-------TEWSRS----- 1107
              P+   Y       H  +    E     R V L     FL+       T W+ S     
Sbjct: 465  IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILN 522

Query: 1108 ---------DFLIEAAEASRRVILVLTKNFLQ---TEWSRSDFRSAIHEALTTKTHKLVL 1155
                      ++ +      R++  +  +FL         S +   +  AL  +      
Sbjct: 523  TLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAE------ 575

Query: 1156 VEENIVPEAESDIE 1169
             +E I  EA   ++
Sbjct: 576  -DEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 1e-08
 Identities = 84/529 (15%), Positives = 164/529 (31%), Gaps = 152/529 (28%)

Query: 54  ATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSK 113
             V L   +  K    I+ L    + NC     P  V   L+ L          + D S 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWL---NLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 114 KLDLVPGSL-DGLRELQ----------VL-NISSSNIKSISDDVF---CSLANIQTLNLS 158
            + L   S+   LR L           VL N+ ++       + F   C     + L  +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSC-----KILLTT 272

Query: 159 RN-SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRR 217
           R   + D  +       +    +     +    + L+ LD     L              
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------------- 319

Query: 218 LQNLHLENNEISQIAPNAFVAL--SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
                    E+    P   +++   S+R    + ++          +C  ++ I   ++S
Sbjct: 320 --------REVLTTNPRR-LSIIAESIRDGLATWDNW------KHVNCDKLTTI--IESS 362

Query: 276 LVELSRGLFHKL-EQLLVLDLSSNHLSSNHIDETTFIGLIRLIIL--NLSNNELTRIDAK 332
           L  L    + K+ ++L V   S++            I  I L ++  ++  +++  +  K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAH------------IPTILLSLIWFDVIKSDVMVVVNK 410

Query: 333 TFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL------SENRIHH--ITAHLFNG 384
                       L   S+  +E     S  ++ +IYL            H  I  H    
Sbjct: 411 ------------LHKYSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---- 452

Query: 385 LYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPF-LKTLDLGEN 443
            Y + K   S++L+     + F                       S +   LK ++  E 
Sbjct: 453 -YNIPKTFDSDDLIPPYLDQYF----------------------YSHIGHHLKNIEHPE- 488

Query: 444 QISKIENGSFKNLQQLTDLRLVDNNI---GNLSSGMLYELPSLEVLNLSKNKIHQIEIGT 500
                    F+ +    D R ++  I       +     L +L+ L   K  I   +   
Sbjct: 489 -----RMTLFRMV--FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND-PK 540

Query: 501 FEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFD 544
           +E  + + AI    +FL       I   +T L ++  +   E+  ++ +
Sbjct: 541 YE--RLVNAIL---DFLPKIEENLICSKYTDLLRIALMA--EDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 7e-07
 Identities = 98/637 (15%), Positives = 191/637 (29%), Gaps = 163/637 (25%)

Query: 375 HHITAHL-FNGLYVLSKLTLSNNLLVNIDSKAFK---NCSALKELD---LSS---NAIVE 424
           HH   H+ F       +       ++++   AF    +C  ++++    LS    + I+ 
Sbjct: 1   HHHHHHMDFE----TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 425 IPSALSELPFL--KTLDLGENQISK-IENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP 481
              A+S    L    L   E  + K +E     N + L    +            +Y   
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYI-- 113

Query: 482 SLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV 541
             E  +   N           + +    +R                  LL L  ++N L+
Sbjct: 114 --EQRDRLYNDNQVFAKYNVSRLQPYLKLR----------------QALLELRPAKNVLI 155

Query: 542 WFDYAMVPGNLK-WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI--LEISELSIPNS 598
                +  G+ K W+      +    +Y +++  +          +I  L +   + P +
Sbjct: 156 ---DGV-LGSGKTWV-----ALDVCLSY-KVQCKMD--------FKIFWLNLKNCNSPET 197

Query: 599 VEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYL- 657
           V  L +   L          D +  +R D  +N   ++      L+ + ++K      L 
Sbjct: 198 V--LEMLQKL------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 658 --------GGNPFDCDCSMDWLPIINNNTS-----PSMERQYPKIMDLDNVVCKMTYSRG 704
                     N F+  C +  L +            +    +  +            S  
Sbjct: 250 LLNVQNAKAWNAFNLSCKI--L-LTTRFKQVTDFLSAATTTHISLDHH---------SMT 297

Query: 705 STHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCF----HD-----QN 755
            T     ++   +YL   D     L      +        P+  S       D      N
Sbjct: 298 LTP-DEVKSLLLKYL---DCRPQDLPR----EVLTTN---PRRLSIIAESIRDGLATWDN 346

Query: 756 WN-------TNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
           W        T +++ S   +       P +   ++   + F   P    I    +  ++ 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVF---PPSAHIPTILLSLIWF 397

Query: 809 NNSQIEV--ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRI--EYI 864
           +  + +V  ++N+      SL     + + I        +   KL   Y     I   Y 
Sbjct: 398 DVIKSDVMVVVNKLHK--YSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 865 ANGTFNALISLQVLQLDG----------------NRLKSFRAFDLNTNSMLRKVYLGNNP 908
              TF+    L    LD                  R+  FR   L+   + +K+   +  
Sbjct: 455 IPKTFD-SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 909 FSCSCA---TLQELQTW---IIDNSNK----VKDGLD 935
           ++ S +   TLQ+L+ +   I DN  K    V   LD
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 48/413 (11%), Positives = 117/413 (28%), Gaps = 70/413 (16%)

Query: 59  DSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLV 118
             S          SLE+  I         +       +L  L +                
Sbjct: 9   SPSAANPVEPIGASLEDFSIEQLP--AKTIYALGENIDLTGLNVTG-------------- 52

Query: 119 PGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAE 178
                   +          + S     F S   +    ++        +         + 
Sbjct: 53  --------KYDDGKQRPVKVTSEQISGFSSSVPVDKQEVTITIEGKQKSFSVH----ISP 100

Query: 179 SNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR--RLQNLHLENNEISQIAPNAF 236
                 +          + L  N ++++   +    FR  ++  + L    +  I   AF
Sbjct: 101 VRVENGVLTEILKGYNEIILP-NSVKSIPKDA----FRNSQIAKVVLNEG-LKSIGDMAF 154

Query: 237 VALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS 296
              S+++ +   S  L  L E +F  C ++ +    K  + +L    F          + 
Sbjct: 155 -FNSTVQEIVFPST-LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYA------GIE 206

Query: 297 SNHLSSN--HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
              L      I    F+   +L  + +  N ++ I  + F++   +  + L  N +  I 
Sbjct: 207 EVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESG-ITTVKL-PNGVTNIA 263

Query: 355 DNAFLSLYNLHTIYLSENRIHH-----ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNC 409
             AF     L  +    +  +      I  +   G   L++  +  ++   +        
Sbjct: 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESI-RILGQGLLGGN 322

Query: 410 SALKELDLSSNAIVEIPSALSELPF-------LKTLDLGENQISKIENGSFKN 455
             + +        + IP+ ++++ F       +K + +      ++    +  
Sbjct: 323 RKVTQ--------LTIPANVTQINFSAFNNTGIKEVKVEGTTPPQVFEKVWYG 367

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 58.2 bits (141), Expect = 8e-09
 Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 15/298 (5%)

Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
           +    A       +SL   + S   L +          D++ +        +  +    K
Sbjct: 8   DSPSAANPVEPIGASLE--DFSIEQLPAKTIYALGENIDLTGLNVTGK--YDDGKQRPVK 63

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           +    +   SS+        E T     +    ++  + +   +    + L     + L 
Sbjct: 64  VTSEQISGFSSS--VPVDKQEVTITIEGKQKSFSVHISPVRVENGVLTEILKGYNEIIL- 120

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF 406
            NS+  I  +AF +   +  + L+E  +  I    F     + ++   + L   +    F
Sbjct: 121 PNSVKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNST-VQEIVFPSTL-EQLKEDIF 176

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
             C  LK+ DLS   I ++P++      ++ + L    + +I + +F    QL  + +  
Sbjct: 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI-P 234

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVF 524
            N+  +      E   +  + L    +  I    F     LA +    +   D     
Sbjct: 235 ENVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAM 290

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 874 SLQVLQLDGNRLKSFR--AFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVK 931
               L L GN L +      D      LR  +LG NP+ C C  L  L+ W+     +  
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPA--LRTAHLGANPWRCDCR-LVPLRAWLAGRPERAP 88

Query: 932 DGLDISCVIDESSPPIRKEIDLNSTT 957
              D+ C     +PP  +   L    
Sbjct: 89  YR-DLRC----VAPPALRGRLLPYLA 109

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 32/94 (34%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQ--QISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRK 801
           CP  CSC         +VDC  +    +++P   P+D T + L GN    +P  +     
Sbjct: 2   CPAPCSC------AGTLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGL----- 50

Query: 802 NMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
                               + L +L+  HL  N
Sbjct: 51  -------------------LDALPALRTAHLGAN 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 31/91 (34%)

Query: 584 HNRILEISEL--SIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL 641
             R L  + L  + P     L +  N + ++ P    D                  L AL
Sbjct: 16  GRRGLTWASLPTAFPVDTTELVLTGNNLTAL-PPGLLDA-----------------LPAL 57

Query: 642 RLKPVPQNKTLPEFYLGGNPFDCDCSMDWLP 672
           R             +LG NP+ CDC +  L 
Sbjct: 58  R-----------TAHLGANPWRCDCRLVPLR 77

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.8 bits (124), Expect = 8e-07
 Identities = 55/302 (18%), Positives = 97/302 (32%), Gaps = 56/302 (18%)

Query: 141 ISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH 200
            SD+      ++   NL  +    + + G    R           E      ++ +DLS+
Sbjct: 43  ASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN 102

Query: 201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF 260
           + +     +  +++  +LQNL LE   +S    N     S+L  LN+             
Sbjct: 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL------------- 149

Query: 261 SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSS-NHLSSNHIDETTFIGLIRLIIL 319
           S C   SE      +L  L         +L  L+LS     +  H+          +  L
Sbjct: 150 SGCSGFSE-----FALQTLLSS----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200

Query: 320 NLSNNELTRIDAKTFKDLVF----LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
           NLS      +       LV     L  LDL ++    ++++ F   + L+          
Sbjct: 201 NLS-GYRKNLQKSDLSTLVRRCPNLVHLDLSDSV--MLKNDCFQEFFQLNY--------- 248

Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDL----SSNAIVEIPSALS 430
                       L  L+LS    +  ++         LK L +        +  +  AL 
Sbjct: 249 ------------LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP 296

Query: 431 EL 432
            L
Sbjct: 297 HL 298

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 13/219 (5%)

Query: 284 FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL 343
           +++L     L  + +    N   + T   L + +I                     +Q +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHM 98

Query: 344 DLRNNSIGYIEDNAFLS-LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID 402
           DL N+ I     +  LS    L  + L   R+     +       L +L LS     +  
Sbjct: 99  DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 403 S--KAFKNCSALKELDLSSNAIV---EIPSALSEL-PFLKTLDLGENQISKIENGSF--- 453
           +      +CS L EL+LS         +  A++ +   +  L+L       ++       
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY-RKNLQKSDLSTL 217

Query: 454 -KNLQQLTDLRLVD-NNIGNLSSGMLYELPSLEVLNLSK 490
            +    L  L L D   + N      ++L  L+ L+LS+
Sbjct: 218 VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.1 bits (121), Expect = 1e-06
 Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 28/201 (13%)

Query: 359 LSLYNLHTIYLSENRIHHIT----AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKE 414
                   I   E  I  I     + + + + +L+ L +     ++I  K   N   LK 
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPN---LKS 197

Query: 415 LDLSSNAI-VEIPSAL--SELPFLKTLDLGENQISKIENGSFKNLQ---------QLTDL 462
           L++ S  +   +   +  S+LP L+ L L         +G     +          L  L
Sbjct: 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 463 RLVDNNIGNLSSGMLYE---LPSLEVLNLSKNKIH----QIEIGTFEKNKRLAAIRLDSN 515
            +VD    N+   M  E   LP LE +++S   +     ++ +   +K K L  I +  N
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317

Query: 516 FLTDINGVFTYLAQLLWLNLS 536
           +L+D   +   L + L + + 
Sbjct: 318 YLSD--EMKKELQKSLPMKID 336

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 2e-05
 Identities = 25/163 (15%), Positives = 54/163 (33%), Gaps = 25/163 (15%)

Query: 294 DLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF--KDLVFLQRLDLRNNSIG 351
            L++  +   +           L  L + +  L     +     DL  L++L L      
Sbjct: 173 LLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED 232

Query: 352 YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF---KN 408
           Y  D        L     S++R  +           L  L + +    N+  + F     
Sbjct: 233 YGFDGDMNVFRPL----FSKDRFPN-----------LKWLGIVDAEEQNVVVEMFLESDI 277

Query: 409 CSALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQIS 446
              L+ +D+S+  +       +   + ++  LK +++  N +S
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 48.5 bits (115), Expect = 5e-06
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 17/133 (12%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
            L+L              D+V L R      ++  IE+N    +  L ++ LS NR++ +
Sbjct: 131 ALDLKGLRSDPDLVAQNIDVV-LNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRL 185

Query: 378 T--AHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVE--------IP 426
              + +      L  L LS N L +       K    L+EL L  N++ +        I 
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYIS 244

Query: 427 SALSELPFLKTLD 439
           +     P L  LD
Sbjct: 245 AIRERFPKLLRLD 257

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
           + LDL          A +    L         +  IE    +N+ +L  L L +N +  L
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE----ENIPELLSLNLSNNRLYRL 185

Query: 473 S--SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--------ING 522
              S ++ + P+L++LNLS N++         K  +L  + LD N L D        I+ 
Sbjct: 186 DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245

Query: 523 VFTYLAQLLWLN 534
           +     +LL L+
Sbjct: 246 IRERFPKLLRLD 257

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 33/206 (16%), Positives = 77/206 (37%), Gaps = 33/206 (16%)

Query: 53  DATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKS 112
            A+ L   +      +N   +  +  S+     +  ++        +L ++ R     ++
Sbjct: 73  TASALKAVNYKILDREN-RRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQA 131

Query: 113 KKL-----DLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDT 167
             L     D    + +    L   +  ++ ++ I ++    +  + +LNLS N +  +D 
Sbjct: 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN----IPELLSLNLSNNRLYRLDD 187

Query: 168 LGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNE 227
           +   V++A                +L+IL+LS N+L++  +   I K  +L+ L L+ N 
Sbjct: 188 MSSIVQKAP---------------NLKILNLSGNELKSERELDKI-KGLKLEELWLDGNS 231

Query: 228 ISQIAPN-------AFVALSSLRILN 246
           +     +              L  L+
Sbjct: 232 LCDTFRDQSTYISAIRERFPKLLRLD 257

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 28/140 (20%)

Query: 404 KAFKNCSALKELDLSS-NAI-----VEIPSALSELPFLKTLDLGENQISKIENGSF---- 453
           +   N   L+E++L++   I          AL    ++K   +   + +     +     
Sbjct: 30  RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 454 KNLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKIHQIEIGT-------- 500
           K    L  L +  N I       L    L    SL  L +         +G         
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQS---QPLGNNVEMEIAN 145

Query: 501 -FEKNKRLAAIRLDSNFLTD 519
             EKN  L            
Sbjct: 146 MLEKNTTLLKFGYHFTQQGP 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1344
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.94
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.87
2js7_A	160	Myeloid differentiation primary response protein M	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.72
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.65
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.62
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.56
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.43
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.3
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.97
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.94
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	98.74
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	98.71
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.45
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.36
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.0
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.33
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	96.98
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	96.94
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	96.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.33
2js7_A	160	Myeloid differentiation primary response protein M	95.96
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	95.91
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	93.84
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	93.35
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	91.59
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.93
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	88.55

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-82  Score=836.95  Aligned_cols=757  Identities=23%  Similarity=0.311  Sum_probs=481.9

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC-CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI-SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE  268 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~  268 (1344)
                      .++|++|||++|.++.+.+. .|.++++|++|+|++|.. ..+.|.+|.++++|++|+|++|.+..+++..|.++++|++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  101 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE  101 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred             CCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence            45677777777777776555 677777777777777743 3344667777777777777777777776666777777777


Q ss_pred             EEcccCccccc-C-hhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCC--CcccEEE
Q psy16377        269 IYAQKNSLVEL-S-RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDL--VFLQRLD  344 (1344)
Q Consensus       269 L~L~~n~l~~l-~-~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~  344 (1344)
                      |+|++|.+... + ...|.++++|++|+|++|.+.+. .....|.++++|+.|++++|.+..+.+..+..+  ++|+.|+
T Consensus       102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL-YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC-CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred             eeCcCCCCCcccccCccccccCCCCEEECCCCccccc-ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence            77777777652 2 22356777777777777776652 112456677777777777777776666666655  6677777


Q ss_pred             ecCCCccccchhhhcCCCC------ccEEEccCCcccccccccccC---CCceeEEEccCC---------cCCCCChhhh
Q psy16377        345 LRNNSIGYIEDNAFLSLYN------LHTIYLSENRIHHITAHLFNG---LYVLSKLTLSNN---------LLVNIDSKAF  406 (1344)
Q Consensus       345 Ls~n~l~~i~~~~f~~l~~------L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~Ls~n---------~l~~~~~~~~  406 (1344)
                      ++.|.+....+..+..+++      |+.|++++|.+.+..+..+..   ...++.|.+..+         .+.......|
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            7777665544333333333      666667666665544433322   134555555422         2222222233


Q ss_pred             cCC--CCCcEEEccCCCCCcc-chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCc
Q psy16377        407 KNC--SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSL  483 (1344)
Q Consensus       407 ~~l--~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  483 (1344)
                      .++  ++|+.|++++|.+..+ +..+..+++|+.|+|++|.+.++.+..|.++++|+.|++++|.++.+.+..|.++++|
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence            332  3455555555554433 2344445555555555555555544455555555555555555544444444555555


Q ss_pred             cEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCC
Q psy16377        484 EVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYIS  563 (1344)
Q Consensus       484 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~  563 (1344)
                      +.|++++|++..+.+..|..                       +++|+.|++++|.++.++.   .++|+.|++++|.++
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~-----------------------l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~  394 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKF-----------------------LEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV  394 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCS-----------------------CCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC
T ss_pred             CEEECCCCCCCccChhhhcC-----------------------CCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc
Confidence            55555555554444444444                       4445555555554443322   345555666666665


Q ss_pred             CCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccc
Q psy16377        564 SLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL  643 (1344)
Q Consensus       564 ~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~  643 (1344)
                      .++..     ..+++.|++++|++.++....                     .+.++++|+.|++++|+++++.....  
T Consensus       395 ~l~~~-----~~~l~~L~ls~N~l~~l~~~~---------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~--  446 (844)
T 3j0a_A          395 TLPKI-----NLTANLIHLSENRLENLDILY---------------------FLLRVPHLQILILNQNRFSSCSGDQT--  446 (844)
T ss_dssp             CCCCC-----CTTCCEEECCSCCCCSSTTHH---------------------HHTTCTTCCEEEEESCCCCCCCSSSS--
T ss_pred             ccccc-----ccccceeecccCccccCchhh---------------------hhhcCCccceeeCCCCcccccccccc--
Confidence            55431     246777777777776643211                     12345666777776666553211000  


Q ss_pred             cCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCC
Q psy16377        644 KPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYD  723 (1344)
Q Consensus       644 ~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~  723 (1344)
                                                                                                      
T Consensus       447 --------------------------------------------------------------------------------  446 (844)
T 3j0a_A          447 --------------------------------------------------------------------------------  446 (844)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCc
Q psy16377        724 IHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM  803 (1344)
Q Consensus       724 ~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L  803 (1344)
                                                                      +.. ...++.|+|++|.++.+...        
T Consensus       447 ------------------------------------------------~~~-~~~L~~L~Ls~N~l~~~~~~--------  469 (844)
T 3j0a_A          447 ------------------------------------------------PSE-NPSLEQLFLGENMLQLAWET--------  469 (844)
T ss_dssp             ------------------------------------------------SCS-CTTCCBCEEESCCCSSSCCS--------
T ss_pred             ------------------------------------------------ccc-CCccccccCCCCcccccccc--------
Confidence                                                            000 01233344444444322211        


Q ss_pred             cEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCC
Q psy16377        804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGN  883 (1344)
Q Consensus       804 ~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N  883 (1344)
                                 .+.+..|.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+++++..|.  ++|++|+|++|
T Consensus       470 -----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          470 -----------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             -----------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             -----------ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence                       12234677888999999999999999999999999999999999999999988887  89999999999


Q ss_pred             CCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCC-CCCeeecCCCCCCCccccccCCcccccCcc
Q psy16377        884 RLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKD-GLDISCVIDESSPPIRKEIDLNSTTCTEYY  962 (1344)
Q Consensus       884 ~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~-~~~~~C~~~~~~~~~~~~~~~~~~~C~~~~  962 (1344)
                      +|+.+++..+   .+|+.|++++|||.|+|+ +.||..|+......+.+ ..++.|..|....+ ....++....|....
T Consensus       537 ~l~~~~~~~~---~~L~~l~l~~Np~~C~c~-~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g-~~l~~~~~~~C~~~~  611 (844)
T 3j0a_A          537 QLLAPNPDVF---VSLSVLDITHNKFICECE-LSTFINWLNHTNVTIAGPPADIYCVYPDSFSG-VSLFSLSTEGCDEEE  611 (844)
T ss_dssp             CCCCCCSCCC---SSCCEEEEEEECCCCSSS-CCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCS-CCTTTCCCCCC----
T ss_pred             cCCCCChhHh---CCcCEEEecCCCcccccc-cHHHHHHHHhcCcccccccccCccCCchhhCC-CccccCccccCCchh
Confidence            9999988766   478999999999999999 68999999876655544 47799998876443 234555566787532


Q ss_pred             cccceeeeeccccchhHHHHHHHHHHHHHHHHHhhhhcccceeeeeeeccceeeeee----cccCCCccCCccCCCCchh
Q psy16377        963 ATSSVIASIMVSDYLPFMIITFLMFLVFLILIIFMFVFKDPFRVWLYTKYGIRLFNF----KATSSKHFGEDREKLPKDE 1038 (1344)
Q Consensus       963 ~~~~~~~~~~~~~~~~~lv~~lv~~~v~l~~~~~~~~~~~~~~~wl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~ 1038 (1344)
                      ...    .   ..+ .+++++.++++++ +++++++++++.+.+++|.+...+++..    ....++.||++..+.++|+
T Consensus       612 ~~~----~---~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~yd~fisy~~~d~  682 (844)
T 3j0a_A          612 VLK----S---LKF-SLFIVCTVTLTLF-LMTILTVTKFRGFCFICYKTAQRLVFKDHPQGTEPDMYKYDAYLCFSSKDF  682 (844)
T ss_dssp             -------------C-HHHHHHHHHHHHH-HHTTTSHHHHC----------------CCCGGGSSSCCCCSEEEECCSTTH
T ss_pred             hcc----c---cce-ehhHHHHHHHHHH-HHHHHHHHHHhhhhhhhhHHHHHHHhccccccccccceeccEEEEeeCCcH
Confidence            110    0   001 1111111111111 1111222222222222232222222211    1234567888888889999


Q ss_pred             HHHHHHHHhhhhc---CCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377       1039 EFVLQSIVAELEH---GNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus      1039 ~~v~~~l~~~Le~---~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
                      +||.++|++.||+   ++++||+|+|+|||.||.+++                                   |+|.+||+
T Consensus       683 ~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~-----------------------------------~~i~~~i~  727 (844)
T 3j0a_A          683 TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRI-----------------------------------ANIQDAIW  727 (844)
T ss_dssp             HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHH-----------------------------------HHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHH-----------------------------------HHHHHHHH
Confidence            9999999999998   378999999999999999999                                   99999999


Q ss_pred             hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccc--hhhHHHHhhhccEEEeCc-----hhhH
Q psy16377       1116 ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAES--DIELKPYLKSCMKIRWGE-----KRFW 1188 (1344)
Q Consensus      1116 ~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~--~~~l~~~l~~~~~l~w~~-----~~Fw 1188 (1344)
                      +|||+|+|+|++|++++||++||+.|++++++++++++|+|+++++++..+  +++||++|+++|||+|++     ++||
T Consensus       728 ~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~l~~~~~~~~~l~w~~~~~~~~~Fw  807 (844)
T 3j0a_A          728 NSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQYLRWPEDFQDVGWFL  807 (844)
T ss_dssp             HSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCSSSCCSCSSTTHHHHTTCCCCCCSSSTTTTHHH
T ss_pred             HhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCChHHhhhhHHHHHHHhhCCeeeCCCCchhHHHHH
Confidence            999999999999999999999999999999999999999999999998876  579999999999999976     6999


Q ss_pred             HHhHhhcCCCCcC
Q psy16377       1189 ERLRYAMPTCDNS 1201 (1344)
Q Consensus      1189 ~~l~~~~p~~~~~ 1201 (1344)
                      ++||||||.+++.
T Consensus       808 ~~l~~al~~~~~~  820 (844)
T 3j0a_A          808 HKLSQQILKKEKE  820 (844)
T ss_dssp             HHHTTTTTSCCCC
T ss_pred             HHHHHHhcccccc
Confidence            9999999987543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.4e-58  Score=592.53  Aligned_cols=628  Identities=24%  Similarity=0.295  Sum_probs=453.0

Q ss_pred             cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377        194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK  273 (1344)
Q Consensus       194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~  273 (1344)
                      +.+|.++++++.+|..  +.  ++|++|+|++|.+.++.+..|.++++|++|++++|.+..+++..|.++++|++|++++
T Consensus         7 ~~~~cs~~~L~~ip~~--~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDD--LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             SEEECCSSCCSSCCSC--SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             CeeECCCCCccccccc--cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            5788888888888863  43  6888888888888888777888888888899888888888888888888888888888


Q ss_pred             CcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCcccc
Q psy16377        274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYI  353 (1344)
Q Consensus       274 n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i  353 (1344)
                      |.+..+++..|.++++|++|++++|.+.+  +....|.++++|++|++++|.+.+..+..+..+++|+.|++++|.+..+
T Consensus        83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  160 (680)
T 1ziw_A           83 NELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL  160 (680)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred             CccCccChhhhccCCCCCEEECCCCccCc--cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence            88888888778888888888888888876  5566788888888888888888888777788888888888888888877


Q ss_pred             chhhhc--CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhh---cCCCCCcEEEccCCCCCcc-ch
Q psy16377        354 EDNAFL--SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAF---KNCSALKELDLSSNAIVEI-PS  427 (1344)
Q Consensus       354 ~~~~f~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~l-p~  427 (1344)
                      .+..|.  .+++|+.|++++|.+.+..+..|..+.+|+.|++.++.+.......+   -..++|+.|++++|.+..+ |.
T Consensus       161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            766553  45788888888888888888888888888888888876643221111   1347888888888888744 45


Q ss_pred             hhcCCCC--ccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCc---------cc
Q psy16377        428 ALSELPF--LKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH---------QI  496 (1344)
Q Consensus       428 ~l~~l~~--L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~---------~~  496 (1344)
                      .+..++.  |++|++++|.+.++.+..|..+++|+.|++++|.+..+.+..|.++++|+.|++++|...         .+
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i  320 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI  320 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence            6666544  888888888888888778888888888888888887777777888888888888876433         23


Q ss_pred             ccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCc--cccCCCcC----CCccEEEcCCCcCCCCCccc
Q psy16377        497 EIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLV--WFDYAMVP----GNLKWLDIHGNYISSLNNYY  569 (1344)
Q Consensus       497 ~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~--~~~~~~lp----~~L~~L~Ls~n~l~~l~~~~  569 (1344)
                      ....|..+++|+.|++++|.++.++ ..|.++++|+.|++++|.+.  .++...+.    .+|+.|++++|.++.+.. .
T Consensus       321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-~  399 (680)
T 1ziw_A          321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-D  399 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-T
T ss_pred             ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-h
Confidence            3346777888888888888887764 45778888888888887642  22211111    355666666665554432 1


Q ss_pred             cccCCCcccEEECCCCccccccc-ccc--cCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCC
Q psy16377        570 EIKDGLSIKNLDASHNRILEISE-LSI--PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV  646 (1344)
Q Consensus       570 ~l~~~~~L~~L~Ls~N~l~~~~~-~~~--~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~  646 (1344)
                      .+..+++|+.|++++|.+.+..+ ..+  ..+|++|++++|++.++.+..|..+++|+.|++++|.++.+...       
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-------  472 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-------  472 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-------
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-------
Confidence            23445556666666665554221 112  13455555555555555555555555555555555544321100       


Q ss_pred             CCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccc
Q psy16377        647 PQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHC  726 (1344)
Q Consensus       647 ~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~  726 (1344)
                                                                                          +..         
T Consensus       473 --------------------------------------------------------------------p~~---------  475 (680)
T 1ziw_A          473 --------------------------------------------------------------------PSP---------  475 (680)
T ss_dssp             --------------------------------------------------------------------SCT---------
T ss_pred             --------------------------------------------------------------------Ccc---------
Confidence                                                                                000         


Q ss_pred             ccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEE
Q psy16377        727 FALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSL  806 (1344)
Q Consensus       727 ~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L  806 (1344)
                                                               +..     ...++.|++++|+++.+++.+|.++++|+.|
T Consensus       476 -----------------------------------------~~~-----l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L  509 (680)
T 1ziw_A          476 -----------------------------------------FQP-----LRNLTILDLSNNNIANINDDMLEGLEKLEIL  509 (680)
T ss_dssp             -----------------------------------------TTT-----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             -----------------------------------------ccc-----CCCCCEEECCCCCCCcCChhhhccccccCEE
Confidence                                                     000     1347889999999999999999999999999


Q ss_pred             EccCCcccccccc--------hhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEE
Q psy16377        807 YVNNSQIEVILNQ--------TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVL  878 (1344)
Q Consensus       807 ~l~~n~i~~i~~~--------~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L  878 (1344)
                      ++++|+++.+...        .|.++++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|+.|
T Consensus       510 ~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  589 (680)
T 1ziw_A          510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL  589 (680)
T ss_dssp             ECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             eCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence            9999999987543        38899999999999999999999999999999999999999999999999999999999


Q ss_pred             EccCCCCccccccccc-CCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCC-CCeeecCCCCCCCccccccCCcc
Q psy16377        879 QLDGNRLKSFRAFDLN-TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG-LDISCVIDESSPPIRKEIDLNST  956 (1344)
Q Consensus       879 ~L~~N~l~~~~~~~l~-~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~-~~~~C~~~~~~~~~~~~~~~~~~  956 (1344)
                      +|++|+|+.+++..+. .+++|+.|++++|||.|+|+.+.||.+|+++....+.+. .+++|..|....+ ....+++..
T Consensus       590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~g-~~l~~~~~~  668 (680)
T 1ziw_A          590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHG-FPVRLFDTS  668 (680)
T ss_dssp             ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------------------
T ss_pred             ECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCcccccccCCcEECCchHHCC-CcccccChh
Confidence            9999999999998887 679999999999999999984489999997776666664 6799999875432 334555555


Q ss_pred             ccc
Q psy16377        957 TCT  959 (1344)
Q Consensus       957 ~C~  959 (1344)
                      .|.
T Consensus       669 ~~~  671 (680)
T 1ziw_A          669 SCK  671 (680)
T ss_dssp             ---
T ss_pred             hcC
Confidence            554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-58  Score=601.49  Aligned_cols=699  Identities=23%  Similarity=0.271  Sum_probs=493.1

Q ss_pred             cccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccC---CCcccccCCCCCCEEEeeCCcCCc
Q psy16377          9 SWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSS---ITTKSFQNIYSLEELKISNCKLVE   85 (1344)
Q Consensus         9 ~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~---l~~~~f~~l~~L~~L~Ls~~~i~~   85 (1344)
                      .|....++|.|..|.|+       .         .+++.|+|+++.+.   +.   ++ .+|.++++|+.++++.+.+..
T Consensus        32 ~W~~~~~~C~w~gv~C~-------~---------~~v~~L~L~~~~l~---g~~~~l~-~~l~~L~~L~~l~~~~~~~~~   91 (768)
T 3rgz_A           32 DWSSNKNPCTFDGVTCR-------D---------DKVTSIDLSSKPLN---VGFSAVS-SSLLSLTGLESLFLSNSHING   91 (768)
T ss_dssp             TCCTTSCGGGSTTEEEE-------T---------TEEEEEECTTSCCC---EEHHHHH-HHTTTCTTCCEEECTTSCEEE
T ss_pred             CCCCCCCCcCCcceEEC-------C---------CcEEEEECCCCCcC---CccCccC-hhHhccCcccccCCcCCCcCC
Confidence            37545566778789996       1         24788999888763   33   54 578899999999999888766


Q ss_pred             cChhhhcCCCCCCEEEcccccCcccCCcccccCCC--cCCCCCCCCEEEccCCCCCccCh-hhhcCCCCCCEEECCCCCC
Q psy16377         86 LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG--SLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRNSI  162 (1344)
Q Consensus        86 l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~--~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~Ls~n~l  162 (1344)
                      ++ ..|+.+++|++|+|++|.+..       .+|.  .++++++|++|+|++|.+....+ ..+.++++|++|+|++|.+
T Consensus        92 l~-~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           92 SV-SGFKCSASLTSLDLSRNSLSG-------PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CC-CCCCCCTTCCEEECCSSEEEE-------EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             Cc-hhhccCCCCCEEECCCCcCCC-------cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence            65 468999999999998776532       3455  78899999999999998875443 3347899999999999988


Q ss_pred             CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377        163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL  242 (1344)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  242 (1344)
                      ++.....+..              +.++++|++|++++|.+++..+   +..+++|++|+|++|.+.+..|. ++++++|
T Consensus       164 ~~~~~~~~~~--------------~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L  225 (768)
T 3rgz_A          164 SGANVVGWVL--------------SDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL  225 (768)
T ss_dssp             EEETHHHHHH--------------TTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSC
T ss_pred             CCcCChhhhh--------------hccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCC
Confidence            7655433210              2347889999999998876543   47889999999999999887776 8889999


Q ss_pred             cEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccC-CCcccEEEc
Q psy16377        243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG-LIRLIILNL  321 (1344)
Q Consensus       243 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~-l~~L~~L~L  321 (1344)
                      ++|++++|.+....+..|..+++|++|++++|.+....+..  .+++|++|++++|.+++. + +..+.. +++|+.|++
T Consensus       226 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~-i-p~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE-I-PDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEES-C-CCCSCTTCTTCSEEEC
T ss_pred             CEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCc-c-CHHHHhhcCcCCEEEC
Confidence            99999999888776777888889999999988887544432  778888888888887642 2 333433 488888888


Q ss_pred             cCCCCCccccccccCCCcccEEEecCCCcc-ccchhhhcCCCCccEEEccCCcccccccccccCCC-ceeEEEccCCcCC
Q psy16377        322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIG-YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY-VLSKLTLSNNLLV  399 (1344)
Q Consensus       322 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~  399 (1344)
                      ++|.+.+..+..|..+++|+.|++++|.+. .++...|..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.+.
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~  381 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS  381 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence            888888777778888888888888888876 66666678888888888888888777776676666 7888888888777


Q ss_pred             CCChhhhcC--CCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCccc
Q psy16377        400 NIDSKAFKN--CSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGM  476 (1344)
Q Consensus       400 ~~~~~~~~~--l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  476 (1344)
                      +..+..+..  +++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+....+..
T Consensus       382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  461 (768)
T 3rgz_A          382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE  461 (768)
T ss_dssp             EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence            655555554  677888888888777 66777777778888888888777777777777777777777777775444445


Q ss_pred             ccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377        477 LYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL  555 (1344)
Q Consensus       477 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L  555 (1344)
                      +..+++|++|++++|++++..+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++..    .+|.     
T Consensus       462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~-----  532 (768)
T 3rgz_A          462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG----NIPA-----  532 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE----ECCG-----
T ss_pred             HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC----cCCH-----
Confidence            677777777777777777666666777777777777777776 456666666666666666666541    1121     


Q ss_pred             EcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcc
Q psy16377        556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK  635 (1344)
Q Consensus       556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~  635 (1344)
                                    .+..+++|+.|++++|++++                      .+|..+.....+..+++..+.   
T Consensus       533 --------------~l~~l~~L~~L~Ls~N~l~g----------------------~ip~~~~~~~~~~~~~~~~~~---  573 (768)
T 3rgz_A          533 --------------ELGDCRSLIWLDLNTNLFNG----------------------TIPAAMFKQSGKIAANFIAGK---  573 (768)
T ss_dssp             --------------GGGGCTTCCEEECCSSEEES----------------------BCCGGGGTTTTCBCCSTTCSC---
T ss_pred             --------------HHcCCCCCCEEECCCCccCC----------------------cCChHHhcccchhhhhccccc---
Confidence                          12234455555555555554                      344444333333322221100   


Q ss_pred             cccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCC
Q psy16377        636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAP  715 (1344)
Q Consensus       636 l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~  715 (1344)
                                       ...++.++.....|...  ..               ....                  ....+
T Consensus       574 -----------------~~~~~~~~~~~~~~~~~--~~---------------~~~~------------------~~~~~  601 (768)
T 3rgz_A          574 -----------------RYVYIKNDGMKKECHGA--GN---------------LLEF------------------QGIRS  601 (768)
T ss_dssp             -----------------EEEEEECCSCCTTCCSS--EE---------------EEEC------------------TTCCG
T ss_pred             -----------------ccccccccccccccccc--cc---------------cccc------------------ccccc
Confidence                             01111111111100000  00               0000                  00000


Q ss_pred             CCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCC
Q psy16377        716 SQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNH  795 (1344)
Q Consensus       716 ~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~  795 (1344)
                      .                                                  .+..++     ....+++..|.+.+..+.
T Consensus       602 ~--------------------------------------------------~~~~l~-----~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          602 E--------------------------------------------------QLNRLS-----TRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             G--------------------------------------------------GGGGGG-----GTCCSCTTSCEEEEECCC
T ss_pred             h--------------------------------------------------hhhccc-----cccccccccceecccCch
Confidence            0                                                  000000     011122334555555556


Q ss_pred             cCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCC
Q psy16377        796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL  875 (1344)
Q Consensus       796 ~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  875 (1344)
                      .|.++++|+.|+|++|+++...+..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L  706 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML  706 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence            68889999999999999999889999999999999999999998889999999999999999999999989999999999


Q ss_pred             CEEEccCCCCcccccccccCCCCCcEEEecCCcccCCC
Q psy16377        876 QVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSC  913 (1344)
Q Consensus       876 ~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C  913 (1344)
                      ++|+|++|+|++..|.. ..+.++....+.|||.-|.-
T Consensus       707 ~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          707 TEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             CEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            99999999999855542 22344455567788888753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.9e-55  Score=563.47  Aligned_cols=632  Identities=24%  Similarity=0.332  Sum_probs=405.6

Q ss_pred             EEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEE
Q psy16377         21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRL  100 (1344)
Q Consensus        21 ~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L  100 (1344)
                      .++|..+.++.+| ..+   + .++++|++++|.+    ..+++..|.++++|++|+|++|.+..+++.+|+++++|++|
T Consensus         8 ~~~cs~~~L~~ip-~~~---~-~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   78 (680)
T 1ziw_A            8 VADCSHLKLTQVP-DDL---P-TNITVLNLTHNQL----RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL   78 (680)
T ss_dssp             EEECCSSCCSSCC-SCS---C-TTCSEEECCSSCC----CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred             eeECCCCCccccc-ccc---C-CCCcEEECCCCCC----CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence            6899999999998 443   2 6799999999998    45777889999999999999999999988899999999999


Q ss_pred             EcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccC
Q psy16377        101 TINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN  180 (1344)
Q Consensus       101 ~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~  180 (1344)
                      +|++|.+.       .+.+..|.++++|++|+|++|.++.+++..|.++++|++|++++|.++.+....+          
T Consensus        79 ~L~~n~l~-------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----------  141 (680)
T 1ziw_A           79 NLQHNELS-------QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ----------  141 (680)
T ss_dssp             ECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS----------
T ss_pred             ECCCCccC-------ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh----------
Confidence            99766553       2334468889999999999999988888788888888888888888776544322          


Q ss_pred             CCCccccCCCCcccEEECCCCCCCCCCCCccC--CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChh
Q psy16377        181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGI--TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEG  258 (1344)
Q Consensus       181 ~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l--~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~  258 (1344)
                             .++++|++|++++|.++.++.. .+  ..+++|+.|++++|.+.++.+..|..+++|+.|+++++.+......
T Consensus       142 -------~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  213 (680)
T 1ziw_A          142 -------VQLENLQELLLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE  213 (680)
T ss_dssp             -------SCCTTCCEEECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred             -------cccccCCEEEccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence                   3467788888888877776543 22  3457788888888887777777777777788887777765421100


Q ss_pred             h---hcCCCCCcEEEcccCcccccChhhhcCCCC--CCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCcccccc
Q psy16377        259 L---FSSCRDISEIYAQKNSLVELSRGLFHKLEQ--LLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT  333 (1344)
Q Consensus       259 ~---f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~--L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  333 (1344)
                      .   ....++|+.|++++|.+..+++..|..++.  |+.|++++|.+.+  +....|..+++|+.|++++|.+.++.+..
T Consensus       214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (680)
T 1ziw_A          214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV--VGNDSFAWLPQLEYFFLEYNNIQHLFSHS  291 (680)
T ss_dssp             HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE--ECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred             HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc--cCcccccCcccccEeeCCCCccCccChhh
Confidence            0   012366777777777777666666665543  7777777776665  44455666777777777777777666666


Q ss_pred             ccCCCcccEEEecCCCcc---------ccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCC--CCC
Q psy16377        334 FKDLVFLQRLDLRNNSIG---------YIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLV--NID  402 (1344)
Q Consensus       334 ~~~l~~L~~L~Ls~n~l~---------~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~  402 (1344)
                      |.++++|+.|++++|...         .+....|..+++|+.|++++|.+.+..+..|.++++|+.|++++|.+.  .+.
T Consensus       292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~  371 (680)
T 1ziw_A          292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT  371 (680)
T ss_dssp             TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred             hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence            667777777777665322         233334555666666666666666655555566666666666655432  222


Q ss_pred             hhhhcCC--CCCcEEEccCCCCCcc-chhhcCCCCccEEEccCCCCCc-cCcchhcCCCCCcEEEcccCCCCCCCccccc
Q psy16377        403 SKAFKNC--SALKELDLSSNAIVEI-PSALSELPFLKTLDLGENQISK-IENGSFKNLQQLTDLRLVDNNIGNLSSGMLY  478 (1344)
Q Consensus       403 ~~~~~~l--~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  478 (1344)
                      ...|..+  ++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+ +.+..|.++++|+.|++++|.+..+....|.
T Consensus       372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  451 (680)
T 1ziw_A          372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA  451 (680)
T ss_dssp             TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred             hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence            2223222  3555666666555543 3445555556666666555554 2234555555555666655555555555555


Q ss_pred             CCCCccEEEcCCCcCcc--cccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCccccCCCcCCCccEE
Q psy16377        479 ELPSLEVLNLSKNKIHQ--IEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWL  555 (1344)
Q Consensus       479 ~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L  555 (1344)
                      .+++|+.|++++|.+..  ..+..|..+++|+.|++++|.++.++ ..|.++++|+.|++++|+++.++...+|..    
T Consensus       452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----  527 (680)
T 1ziw_A          452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG----  527 (680)
T ss_dssp             TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS----
T ss_pred             cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC----
Confidence            55555555555555542  23344555555555555555555544 235555555555555555554433333210    


Q ss_pred             EcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCC
Q psy16377        556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI  633 (1344)
Q Consensus       556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l  633 (1344)
                                 ....+..+++|+.|++++|+++.+++..+.  .+|+.|++++|+++++.+..|.++++|+.|++++|+|
T Consensus       528 -----------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          528 -----------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             -----------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             -----------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence                       011255678899999999999988765544  5899999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCCeEEcCCCcccccccC-ccccccccCCCCccccccCcccc-CCCceeecccCCCCcccccc
Q psy16377        634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSM-DWLPIINNNTSPSMERQYPKIMD-LDNVVCKMTYSRGSTHLPAS  711 (1344)
Q Consensus       634 ~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~-~~l~~~~~~~~~~~~~~~~~~~~-l~~~~C~~~~~~~~~~~~l~  711 (1344)
                      ++++...+.    +....+..+++++|||.|+|.+ .||..+-+..       ...+.+ ...+.|..|..  .++.++.
T Consensus       597 ~~~~~~~~~----~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~-------~~~~~~~~~~~~C~~p~~--~~g~~l~  663 (680)
T 1ziw_A          597 TSVEKKVFG----PAFRNLTELDMRFNPFDCTCESIAWFVNWINET-------HTNIPELSSHYLCNTPPH--YHGFPVR  663 (680)
T ss_dssp             CBCCHHHHH----HHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----------------------------------
T ss_pred             CccChhHhc----ccccccCEEEccCCCcccCCccHHHHHHHHHhc-------CcccccccCCcEECCchH--HCCCccc
Confidence            998876542    0224688999999999999996 8887542211       112233 24678887643  3344555


Q ss_pred             ccCCC
Q psy16377        712 EAAPS  716 (1344)
Q Consensus       712 ~~~~~  716 (1344)
                      ++.+.
T Consensus       664 ~~~~~  668 (680)
T 1ziw_A          664 LFDTS  668 (680)
T ss_dssp             -----
T ss_pred             ccChh
Confidence            54433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.3e-55  Score=575.62  Aligned_cols=655  Identities=20%  Similarity=0.168  Sum_probs=427.9

Q ss_pred             CCCCEEEeeCCcCCc----cChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChh--
Q psy16377         71 YSLEELKISNCKLVE----LPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD--  144 (1344)
Q Consensus        71 ~~L~~L~Ls~~~i~~----l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~--  144 (1344)
                      .+++.|+|+++.+..    ++ .+|.++++|+.++++.+.+        ..+|..|+.+++|++|+|++|.+.+..+.  
T Consensus        50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~--------~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  120 (768)
T 3rgz_A           50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHI--------NGSVSGFKCSASLTSLDLSRNSLSGPVTTLT  120 (768)
T ss_dssp             TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCE--------EECCCCCCCCTTCCEEECCSSEEEEEGGGGG
T ss_pred             CcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCc--------CCCchhhccCCCCCEEECCCCcCCCcCCChH
Confidence            568899999988875    44 5788889999998864432        33567899999999999999988854444  


Q ss_pred             hhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCcc---CCCCCCCCEE
Q psy16377        145 VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSG---ITKFRRLQNL  221 (1344)
Q Consensus       145 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~---l~~l~~L~~L  221 (1344)
                      .++++++|++|+|++|.+.......+                ..++++|++|+|++|.+++..+. .   +.++++|++|
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~----------------~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L  183 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGKVSG----------------GLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHL  183 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSSCCS----------------CCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEE
T ss_pred             HHhCCCCCCEEECcCCccCCcCCHHH----------------hccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEE
Confidence            68889999999999987764322211                13478888888888888776543 3   6788888888


Q ss_pred             EccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCC
Q psy16377        222 HLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLS  301 (1344)
Q Consensus       222 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~  301 (1344)
                      ++++|.+.+..+  +..+++|++|++++|.+...++. |.++++|++|++++|.+....+..|.++++|++|++++|.+.
T Consensus       184 ~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             ECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred             ECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence            888888877654  37788888888888888775554 677888888888888887666666778888888888888776


Q ss_pred             CCCCCcccccCCCcccEEEccCCCCCccccccccC-CCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccccc-
Q psy16377        302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD-LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA-  379 (1344)
Q Consensus       302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~-  379 (1344)
                      +. + +.  ..+++|++|++++|.+++..+..+.. +++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+ 
T Consensus       261 ~~-~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~  336 (768)
T 3rgz_A          261 GP-I-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM  336 (768)
T ss_dssp             ES-C-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred             Cc-c-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence            42 1 11  15677777777777766544444444 3666666666666665555556666666666666666653333 


Q ss_pred             ccccCCCceeEEEccCCcCCCCChhhhcCCC-CCcEEEccCCCCC-ccchhhcC--CCCccEEEccCCCCCccCcchhcC
Q psy16377        380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-ALKELDLSSNAIV-EIPSALSE--LPFLKTLDLGENQISKIENGSFKN  455 (1344)
Q Consensus       380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~-~lp~~l~~--l~~L~~L~Ls~n~i~~~~~~~~~~  455 (1344)
                      ..+.++++|+.|++++|.+.+..+..+..++ +|+.|++++|.+. .+|..+..  +++|++|++++|.+++..+..|..
T Consensus       337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~  416 (768)
T 3rgz_A          337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN  416 (768)
T ss_dssp             HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred             HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence            2355566666666666665544455555544 5666666655554 34444433  455555555555555555555555


Q ss_pred             CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEE
Q psy16377        456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLN  534 (1344)
Q Consensus       456 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~  534 (1344)
                      +++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|..+..+       
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-------  489 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-------  489 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-------
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC-------
Confidence            555555555555553333333445555555555555554444444444444444444444444 233333333       


Q ss_pred             cCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCcc
Q psy16377        535 LSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSV  612 (1344)
Q Consensus       535 Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~  612 (1344)
                                                              ++|+.|++++|++++..+..+.  ++|++|+|++|++.+.
T Consensus       490 ----------------------------------------~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  529 (768)
T 3rgz_A          490 ----------------------------------------TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN  529 (768)
T ss_dssp             ----------------------------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ----------------------------------------CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence                                                    4455555555555544443332  4677777777777778


Q ss_pred             CCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccC
Q psy16377        613 KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDL  692 (1344)
Q Consensus       613 ~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l  692 (1344)
                      .|..|.++++|+.|++++|.+++.-+..+..     ...+..+.+.                                ..
T Consensus       530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-----~~~~~~~~~~--------------------------------~~  572 (768)
T 3rgz_A          530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFI--------------------------------AG  572 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESBCCGGGGT-----TTTCBCCSTT--------------------------------CS
T ss_pred             CCHHHcCCCCCCEEECCCCccCCcCChHHhc-----ccchhhhhcc--------------------------------cc
Confidence            8888999999999999999888533322100     0000000000                                00


Q ss_pred             CCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCC
Q psy16377        693 DNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVP  772 (1344)
Q Consensus       693 ~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p  772 (1344)
                      ...               ..+.                                                  +......+
T Consensus       573 ~~~---------------~~~~--------------------------------------------------~~~~~~~~  587 (768)
T 3rgz_A          573 KRY---------------VYIK--------------------------------------------------NDGMKKEC  587 (768)
T ss_dssp             CEE---------------EEEE--------------------------------------------------CCSCCTTC
T ss_pred             ccc---------------cccc--------------------------------------------------cccccccc
Confidence            000               0000                                                  00000000


Q ss_pred             CCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccc
Q psy16377        773 PRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLS  852 (1344)
Q Consensus       773 ~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~  852 (1344)
                      .   .....+.     +..+....+..+..+..+++..|.+....+..|..+++|+.|||++|++++..|..|.++++|+
T Consensus       588 ~---~~~~~~~-----~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~  659 (768)
T 3rgz_A          588 H---GAGNLLE-----FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF  659 (768)
T ss_dssp             C---SSEEEEE-----CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCC
T ss_pred             c---ccccccc-----cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCC
Confidence            0   0000011     1112222233445666777888888888889999999999999999999998899999999999


Q ss_pred             eeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChh
Q psy16377        853 ELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCAT  915 (1344)
Q Consensus       853 ~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~  915 (1344)
                      .|+|++|+|++..|..|..+++|++|+|++|+++...+..+..+++|++|++++|+++..-+.
T Consensus       660 ~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             EEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            999999999988899999999999999999999998888899999999999999999987663

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-51  Score=524.60  Aligned_cols=562  Identities=19%  Similarity=0.237  Sum_probs=402.4

Q ss_pred             CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377        219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN  298 (1344)
Q Consensus       219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n  298 (1344)
                      +.++.++..++.+ |..+.  ..+++|++++|.++.+++..|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus        15 ~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           15 KTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            4677777777665 44443  36788888888888877777788888888888888887777777778888888888888


Q ss_pred             CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc
Q psy16377        299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT  378 (1344)
Q Consensus       299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~  378 (1344)
                      .+.+  +.+..|.++++|++|++++|.++.+.+..|..+++|++|++++|.+..+....+..+++|+.|++++|.+.+..
T Consensus        92 ~l~~--~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  169 (606)
T 3t6q_A           92 PLIF--MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS  169 (606)
T ss_dssp             CCSE--ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred             cccc--cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence            7765  44566777778888888887777776667777777777777777777665445556777777777777777776


Q ss_pred             cccccCCCcee--EEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCC-----CccCcc
Q psy16377        379 AHLFNGLYVLS--KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQI-----SKIENG  451 (1344)
Q Consensus       379 ~~~~~~l~~L~--~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i-----~~~~~~  451 (1344)
                      +..|..+++|+  .|++++|.+.++.+..|.. .+|+.|++++|.  .++..+..+..+....+.-..+     ..+...
T Consensus       170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~  246 (606)
T 3t6q_A          170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA  246 (606)
T ss_dssp             HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred             hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch--hHHHHhhhccccchhheechhhccccccccChh
Confidence            76677777777  6777777777776666543 467777777765  3444444444444333322211     122233


Q ss_pred             hhcCCC--CCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCC
Q psy16377        452 SFKNLQ--QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLA  528 (1344)
Q Consensus       452 ~~~~l~--~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~  528 (1344)
                      .|.++.  +|+.|++++|.++.++...|..+++|++|++++|+++.++. .+..+++|+.|++++|.++.+ +..+..++
T Consensus       247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  325 (606)
T 3t6q_A          247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFP  325 (606)
T ss_dssp             GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred             HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccC
Confidence            333332  45666666666666655556666666666666666654432 355555666666666665554 33455555


Q ss_pred             CCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccc--cccc--cCcccEEEc
Q psy16377        529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEIS--ELSI--PNSVEVLFI  604 (1344)
Q Consensus       529 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~--~~~~--~~sL~~L~L  604 (1344)
                      +|+.|++++|.+..                     .++. ..+..+++|++|++++|.+.+..  +..+  .++|++|++
T Consensus       326 ~L~~L~l~~n~~~~---------------------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          326 SLTHLSIKGNTKRL---------------------ELGT-GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             TCSEEECCSCSSCC---------------------BCCS-STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccc---------------------ccch-hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence            55555555554431                     1111 12344667778888887777654  2222  246777777


Q ss_pred             CCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCcccc
Q psy16377        605 NNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMER  684 (1344)
Q Consensus       605 s~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~  684 (1344)
                      ++|.+.+..+..|.++++|+.|++++|.++...+...                                           
T Consensus       384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------------------  420 (606)
T 3t6q_A          384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-------------------------------------------  420 (606)
T ss_dssp             CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-------------------------------------------
T ss_pred             CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-------------------------------------------
Confidence            7777777777777778888888887776654221000                                           


Q ss_pred             ccCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcC
Q psy16377        685 QYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCS  764 (1344)
Q Consensus       685 ~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs  764 (1344)
                                                                                                      
T Consensus       421 --------------------------------------------------------------------------------  420 (606)
T 3t6q_A          421 --------------------------------------------------------------------------------  420 (606)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccccc---ccchhcCCCccceeecccccccccC
Q psy16377        765 EQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI---LNQTFNGLSSLQVLHLENNLITHFY  841 (1344)
Q Consensus       765 ~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i---~~~~f~~l~~L~~L~Ls~N~l~~l~  841 (1344)
                         +..     ...++.|++++|.+..+.+..|.++++|+.|++++|+++..   ....|.++++|++|+|++|+++.+.
T Consensus       421 ---~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          421 ---FQN-----LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ---TTT-----CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             ---hhC-----cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence               000     02467888999999888888899999999999999999873   3367999999999999999999999


Q ss_pred             cccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHH
Q psy16377        842 GYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT  921 (1344)
Q Consensus       842 ~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~  921 (1344)
                      +..|.++++|++|+|++|+|+.+++..|..+++| +|+|++|+++.+++..+..+++|+.|++++|||.|+|+ ..||..
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~  570 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS-NIYFLE  570 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG-GHHHHH
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC-cHHHHH
Confidence            9999999999999999999999999999999999 99999999999999988889999999999999999999 589999


Q ss_pred             HHhhcCCccCCCCCeeecCCCCC
Q psy16377        922 WIIDNSNKVKDGLDISCVIDESS  944 (1344)
Q Consensus       922 w~~~~~~~v~~~~~~~C~~~~~~  944 (1344)
                      |++++...+.+..+++|..|...
T Consensus       571 w~~~~~~~~~~~~~~~C~~p~~~  593 (606)
T 3t6q_A          571 WYKENMQKLEDTEDTLCENPPLL  593 (606)
T ss_dssp             HHHHCGGGEECGGGCBEEESGGG
T ss_pred             HHHhCcccccCCCCCeeCCchHh
Confidence            99988777888889999988643

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.2e-50  Score=514.23  Aligned_cols=573  Identities=23%  Similarity=0.314  Sum_probs=361.7

Q ss_pred             CEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcC
Q psy16377        153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA  232 (1344)
Q Consensus       153 ~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~  232 (1344)
                      ++++.+++.++.++...                    .++|++|+|++|.++.++.. .|.++++|++|+|++|.++++.
T Consensus        14 ~~~~c~~~~l~~ip~~~--------------------~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~   72 (606)
T 3vq2_A           14 ITYQCMDQKLSKVPDDI--------------------PSSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIE   72 (606)
T ss_dssp             TEEECTTSCCSSCCTTS--------------------CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEEC
T ss_pred             CceEccCCCcccCCCCC--------------------CCCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccC
Confidence            45666666666665421                    35778888888888877765 6788888888888888888877


Q ss_pred             hhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccC
Q psy16377        233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG  312 (1344)
Q Consensus       233 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~  312 (1344)
                      |.+|.++++|++|+|++|.+..+++..|.++++|++|++++|.+..+++..|+++++|++|++++|.+.+..+ +..|.+
T Consensus        73 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~l-p~~~~~  151 (606)
T 3vq2_A           73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL-PAYFSN  151 (606)
T ss_dssp             TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCC-CGGGGT
T ss_pred             HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceec-hHhHhh
Confidence            7778888888888888888888777777888888888888888877776667788888888888887765211 456777


Q ss_pred             CCcccEEEccCCCCCccccccccCCCccc----EEEecCCCccccchhhhcCCCCccEEEccCCccc-ccccccccCCCc
Q psy16377        313 LIRLIILNLSNNELTRIDAKTFKDLVFLQ----RLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH-HITAHLFNGLYV  387 (1344)
Q Consensus       313 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~  387 (1344)
                      +++|++|++++|.++++.+..|+.+.+|+    .|++++|.+..+++..|... +|+.|++++|.+. +..+..+.+++.
T Consensus       152 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             cCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccc
Confidence            78888888888887777766666665554    67777777777777666554 7777777777765 345555666777


Q ss_pred             eeEEEccCCcCCC------CChhhhcCCC--CCcEEEc-cCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCC
Q psy16377        388 LSKLTLSNNLLVN------IDSKAFKNCS--ALKELDL-SSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQ  458 (1344)
Q Consensus       388 L~~L~Ls~n~l~~------~~~~~~~~l~--~L~~L~L-s~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  458 (1344)
                      |+.+.+..+.+..      .....+..+.  .++.+++ ..+.+......+..+++|+.|++++|.+..+.  .+..+++
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~~  308 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFK  308 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTCC
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hcccccc
Confidence            7766664333221      1222222211  2333333 33333322122444445555555555444433  3444444


Q ss_pred             CcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377        459 LTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN  538 (1344)
Q Consensus       459 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  538 (1344)
                      |+.|++++|.++.++.  + .+++|+.|++++|+...                       .+  .+..+++|+.|++++|
T Consensus       309 L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~-----------------------~~--~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          309 WQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSI-----------------------SF--KKVALPSLSYLDLSRN  360 (606)
T ss_dssp             CSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCE-----------------------EC--CCCCCTTCCEEECCSS
T ss_pred             CCEEEcccccCccccc--C-CCCccceeeccCCcCcc-----------------------ch--hhccCCCCCEEECcCC
Confidence            5555555554444441  2 44444444444442221                       11  2334555555555555


Q ss_pred             CCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccc-cccCcccEEEcCCCcCCccCC-CC
Q psy16377        539 HLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL-SIPNSVEVLFINNNLIKSVKP-HT  616 (1344)
Q Consensus       539 ~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~-~~~~sL~~L~Ls~N~i~~~~~-~~  616 (1344)
                      .+...+.  +|                   ..+..+++|+.|++++|.+.+++.. .-..+|+.|++++|++.+..+ ..
T Consensus       361 ~l~~~~~--~~-------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  419 (606)
T 3vq2_A          361 ALSFSGC--CS-------------------YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA  419 (606)
T ss_dssp             CEEEEEE--CC-------------------HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred             ccCCCcc--hh-------------------hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhh
Confidence            5442210  00                   0112233444444444444332210 000122223333333222222 23


Q ss_pred             CCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCce
Q psy16377        617 FFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV  696 (1344)
Q Consensus       617 f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~  696 (1344)
                      |.++++|+.|+                                                                     
T Consensus       420 ~~~l~~L~~L~---------------------------------------------------------------------  430 (606)
T 3vq2_A          420 FLSLEKLLYLD---------------------------------------------------------------------  430 (606)
T ss_dssp             TTTCTTCCEEE---------------------------------------------------------------------
T ss_pred             hhccccCCEEE---------------------------------------------------------------------
Confidence            34444444444                                                                     


Q ss_pred             eecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCC
Q psy16377        697 CKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIP  776 (1344)
Q Consensus       697 C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip  776 (1344)
                                                                                                      
T Consensus       431 --------------------------------------------------------------------------------  430 (606)
T 3vq2_A          431 --------------------------------------------------------------------------------  430 (606)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCccccceee
Q psy16377        777 MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELY  855 (1344)
Q Consensus       777 ~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  855 (1344)
                             +++|.+..+.+..|.++++|+.|++++|+++. +.+..|.++++|++|+|++|+++.+.+..|.++++|++|+
T Consensus       431 -------l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  503 (606)
T 3vq2_A          431 -------ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN  503 (606)
T ss_dssp             -------CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             -------CcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence                   44444444444456677788888888888887 5678899999999999999999999999999999999999


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCCCcccccccccCCC-CCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCC
Q psy16377        856 LQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNS-MLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGL  934 (1344)
Q Consensus       856 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~-~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~  934 (1344)
                      |++|+|+++.+..|..+++|++|+|++|+|+.++.. +..++ +|++|++++|||.|+|+ +.||.+|++++...+.+..
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c~-~~~~~~~l~~~~~~~~~~~  581 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACICE-HQKFLQWVKEQKQFLVNVE  581 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSST-THHHHTTTTTSSSSBSSGG
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCCc-cHHHHHHHHcCcccccCCc
Confidence            999999999999999999999999999999999988 76775 69999999999999999 6999999988888888889


Q ss_pred             CeeecCCCCCCCccccccCCcccc
Q psy16377        935 DISCVIDESSPPIRKEIDLNSTTC  958 (1344)
Q Consensus       935 ~~~C~~~~~~~~~~~~~~~~~~~C  958 (1344)
                      +++|..|....+ ....+++...|
T Consensus       582 ~~~C~~p~~~~~-~~l~~~~~~~c  604 (606)
T 3vq2_A          582 QMTCATPVEMNT-SLVLDFNNSTC  604 (606)
T ss_dssp             GCCCC-------------------
T ss_pred             cceeCCChHhCC-CEeeecccccC
Confidence            999998765332 33455555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-51  Score=542.94  Aligned_cols=528  Identities=23%  Similarity=0.270  Sum_probs=386.8

Q ss_pred             cccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC-CCCCCCcchhhhccccccCCCCccccCCCCcc
Q psy16377        115 LDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS-IRDIDTLGFAVRRASAESNSGEKIECSGGMDL  193 (1344)
Q Consensus       115 l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L  193 (1344)
                      ++.+|.   -.++|++|||++|.|+.+.+..|.++++|++|+|++|. +..++...                 +.++++|
T Consensus        16 L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-----------------f~~L~~L   75 (844)
T 3j0a_A           16 LTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-----------------FRNLPNL   75 (844)
T ss_dssp             SSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-----------------TSSCTTC
T ss_pred             CCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-----------------hcCCCCC
Confidence            445675   34788999999999988888888899999999998884 33333332                 2447888


Q ss_pred             cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhh--hcCCCCccEEEeeCCCCCCCCh-hhhcCCCCCcEEE
Q psy16377        194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNA--FVALSSLRILNISSNHLVSLPE-GLFSSCRDISEIY  270 (1344)
Q Consensus       194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-~~f~~l~~L~~L~  270 (1344)
                      ++|+|++|.++.+.+. .|.++++|++|+|++|.+.+..+..  |.++++|++|+|++|.+..++. ..|.++++|++|+
T Consensus        76 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~  154 (844)
T 3j0a_A           76 RILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID  154 (844)
T ss_dssp             CEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred             CEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence            8888888888887655 7888888888888888888754444  8888888888888888877643 5678888888888


Q ss_pred             cccCcccccChhhhcCC--CCCCEEEccCCCCCCCCCCcccccCCCc------ccEEEccCCCCCccccccccCC---Cc
Q psy16377        271 AQKNSLVELSRGLFHKL--EQLLVLDLSSNHLSSNHIDETTFIGLIR------LIILNLSNNELTRIDAKTFKDL---VF  339 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l--~~L~~L~Ls~n~l~~~~i~~~~~~~l~~------L~~L~Ls~n~l~~~~~~~~~~l---~~  339 (1344)
                      +++|.+..+.+..|..+  ++|+.|++++|.+.+  .....+..+.+      |+.|++++|.+....+..+...   ..
T Consensus       155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~  232 (844)
T 3j0a_A          155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS--RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ  232 (844)
T ss_dssp             EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC--CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCC
T ss_pred             CCCCcCCeeCHHHcccccCCccceEECCCCcccc--ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccc
Confidence            88888877766666666  788888888887765  22333444333      7777777777665544444322   45


Q ss_pred             ccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCC--CceeEEEccCCcCCCCChhhhcCCCCCcEEEc
Q psy16377        340 LQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGL--YVLSKLTLSNNLLVNIDSKAFKNCSALKELDL  417 (1344)
Q Consensus       340 L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  417 (1344)
                      ++.|.+..+.+..               .+..+.+.+.....|.++  ++|+.|++++|.+.++.+..|..+++|+.|+|
T Consensus       233 l~~L~l~~~~~~~---------------~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  297 (844)
T 3j0a_A          233 AFSLILAHHIMGA---------------GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL  297 (844)
T ss_dssp             BSEEECCSSCCBC---------------SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred             ccceecccccccc---------------cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence            5566655332211               011233444444455554  67888888888888888888888899999999


Q ss_pred             cCCCCCcc-chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        418 SSNAIVEI-PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       418 s~n~l~~l-p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      ++|.+..+ |..+..+++|++|+|++|.+.++.+..|.++++|+.|++++|.++.++...|.++++|+.|++++|.++.+
T Consensus       298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence            99988865 56788889999999999999888888899999999999999999888888888899999999999988755


Q ss_pred             ccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCc
Q psy16377        497 EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS  576 (1344)
Q Consensus       497 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~  576 (1344)
                      ..     +++|+.|++++|.++.+|..                         +.+++.|++++|.++.++....+..+++
T Consensus       378 ~~-----~~~L~~L~l~~N~l~~l~~~-------------------------~~~l~~L~ls~N~l~~l~~~~~~~~l~~  427 (844)
T 3j0a_A          378 HF-----IPSIPDIFLSGNKLVTLPKI-------------------------NLTANLIHLSENRLENLDILYFLLRVPH  427 (844)
T ss_dssp             SS-----CCSCSEEEEESCCCCCCCCC-------------------------CTTCCEEECCSCCCCSSTTHHHHTTCTT
T ss_pred             cC-----CCCcchhccCCCCccccccc-------------------------ccccceeecccCccccCchhhhhhcCCc
Confidence            32     45566666666666554321                         2355666666666666665555566789


Q ss_pred             ccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377        577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY  656 (1344)
Q Consensus       577 L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~  656 (1344)
                      |+.|++++|++++..+.                     ..+..+++|+.|++++|.++.+....                
T Consensus       428 L~~L~Ls~N~l~~~~~~---------------------~~~~~~~~L~~L~Ls~N~l~~~~~~~----------------  470 (844)
T 3j0a_A          428 LQILILNQNRFSSCSGD---------------------QTPSENPSLEQLFLGENMLQLAWETE----------------  470 (844)
T ss_dssp             CCEEEEESCCCCCCCSS---------------------SSSCSCTTCCBCEEESCCCSSSCCSC----------------
T ss_pred             cceeeCCCCcccccccc---------------------cccccCCccccccCCCCccccccccc----------------
Confidence            99999999988765432                     12344678888888888765321100                


Q ss_pred             cCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccccc
Q psy16377        657 LGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFD  736 (1344)
Q Consensus       657 l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~  736 (1344)
                                                                                                      
T Consensus       471 --------------------------------------------------------------------------------  470 (844)
T 3j0a_A          471 --------------------------------------------------------------------------------  470 (844)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccccc
Q psy16377        737 ACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI  816 (1344)
Q Consensus       737 ~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i  816 (1344)
                                                                             +....|.++++|+.|+|++|+++.+
T Consensus       471 -------------------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~  495 (844)
T 3j0a_A          471 -------------------------------------------------------LCWDVFEGLSHLQVLYLNHNYLNSL  495 (844)
T ss_dssp             -------------------------------------------------------CCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred             -------------------------------------------------------cchhhhcCcccccEEECCCCccccc
Confidence                                                                   0012355667788888888888888


Q ss_pred             ccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcc
Q psy16377        817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKS  887 (1344)
Q Consensus       817 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~  887 (1344)
                      .+..|.++++|+.|+|++|+|+.+++..|.  ++|+.|+|++|+|+++++..|   .+|+.|+|++|.+..
T Consensus       496 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          496 PPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             CTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             ChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            888888888888889999988888887776  889999999999998888776   478899999988765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-49  Score=505.14  Aligned_cols=576  Identities=21%  Similarity=0.274  Sum_probs=347.4

Q ss_pred             CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      .|+..|.|....     +.++|..+.++.+| ..+.    .+++.|++++|.+    ..+++.+|.++++|++|+|++|+
T Consensus         3 ~~~~~C~~~~~~-----~~~~c~~~~l~~iP-~~l~----~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~Ls~n~   68 (606)
T 3t6q_A            3 SSDQKCIEKEVN-----KTYNCENLGLNEIP-GTLP----NSTECLEFSFNVL----PTIQNTTFSRLINLTFLDLTRCQ   68 (606)
T ss_dssp             ---CCCEEEETT-----TEEECTTSCCSSCC-TTSC----TTCCEEECTTCCC----SEECTTTSTTCTTCSEEECTTCC
T ss_pred             cccCceecccCC-----ceEECCCCCcccCc-CCCC----CcCcEEEccCCcc----CcCChhHhccCccceEEECCCCc
Confidence            467778875211     26899999999998 4442    4688888888888    34666788888888888888888


Q ss_pred             CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377         83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI  162 (1344)
Q Consensus        83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l  162 (1344)
                      +..+.+.+|+++++|++|+|++|.+.       ...|..|+++++|++|+|++|.++.+++..|.++++|++|++++|.+
T Consensus        69 i~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l  141 (606)
T 3t6q_A           69 IYWIHEDTFQSQHRLDTLVLTANPLI-------FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI  141 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTCCCS-------EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCC
T ss_pred             cceeChhhccCccccCeeeCCCCccc-------ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcc
Confidence            87777677777777777777655442       23455666666666666666666665544455555555555555544


Q ss_pred             CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377        163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL  242 (1344)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  242 (1344)
                      .                                         .++.. .+..+++|++|++++|.+.++.+..|+.+++|
T Consensus       142 ~-----------------------------------------~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          142 S-----------------------------------------SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             C-----------------------------------------CCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTC
T ss_pred             c-----------------------------------------ccCcc-cccCCcccCEEEcccCcccccChhhhhhhccc
Confidence            4                                         43222 23335666666666666666666666666666


Q ss_pred             c--EEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC---CCCCcccccCCC--c
Q psy16377        243 R--ILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS---NHIDETTFIGLI--R  315 (1344)
Q Consensus       243 ~--~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~---~~i~~~~~~~l~--~  315 (1344)
                      +  .|++++|.+..+++..|.. .+|++|++++|.  .+ +..+..+.++....+....+..   ..+....+.++.  +
T Consensus       180 ~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~--~~-~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~  255 (606)
T 3t6q_A          180 TNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ--NL-LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS  255 (606)
T ss_dssp             CSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS--CH-HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred             ceeEEecCCCccCccChhHhhh-ccccccccCCch--hH-HHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence            6  6666666666666555443 456666666654  11 2223444444433333222111   112333344333  5


Q ss_pred             ccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC
Q psy16377        316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN  395 (1344)
Q Consensus       316 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  395 (1344)
                      |+.|++++|.+..+.+..|..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus       256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            6667777777666666666666677777777776666554 355666666666666666666666666666666666666


Q ss_pred             CcCC-CCChhhhcCCCCCcEEEccCCCCCcc---chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCC
Q psy16377        396 NLLV-NIDSKAFKNCSALKELDLSSNAIVEI---PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN  471 (1344)
Q Consensus       396 n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  471 (1344)
                      |.+. .+.+..+..+++|++|++++|.+..+   +..+..+++|++|++++|.+.++.+..|..+++|+.|++++|.+..
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            6655 33334456666666666666666544   3455566666666666666666555556666666666666665533


Q ss_pred             C-CcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCC
Q psy16377        472 L-SSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG  550 (1344)
Q Consensus       472 l-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~  550 (1344)
                      . +...+..+++|++|++++|.+....+..|..                       +++|+.|++++|++.....   | 
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~n~l~~~~~---~-  467 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-----------------------LPALQHLNLQGNHFPKGNI---Q-  467 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----------------------CTTCCEEECTTCBCGGGEE---C-
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhC-----------------------CCCCCEEECCCCCCCcccc---c-
Confidence            2 2233555555555555555555544444444                       4444444444444432100   0 


Q ss_pred             CccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEe
Q psy16377        551 NLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDI  628 (1344)
Q Consensus       551 ~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL  628 (1344)
                                      ....+..+++|+.|++++|+++++.+..+.  ++|+.|+|++|++.+..|..|.++++| .|++
T Consensus       468 ----------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L  530 (606)
T 3t6q_A          468 ----------------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNL  530 (606)
T ss_dssp             ----------------SSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEEC
T ss_pred             ----------------cchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEEC
Confidence                            001123344556666666666555443333  467777777777777777788888889 9999


Q ss_pred             cCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccC
Q psy16377        629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS  702 (1344)
Q Consensus       629 ~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~  702 (1344)
                      ++|+++++.+..+.     ....+..+++++||+.|+|...|+...-.       .....+.+.+.+.|..|..
T Consensus       531 ~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~c~~~~~~~w~~-------~~~~~~~~~~~~~C~~p~~  592 (606)
T 3t6q_A          531 ASNHISIILPSLLP-----ILSQQRTINLRQNPLDCTCSNIYFLEWYK-------ENMQKLEDTEDTLCENPPL  592 (606)
T ss_dssp             CSSCCCCCCGGGHH-----HHHTSSEEECTTCCEECSGGGHHHHHHHH-------HCGGGEECGGGCBEEESGG
T ss_pred             cCCcccccCHhhcc-----cCCCCCEEeCCCCCccccCCcHHHHHHHH-------hCcccccCCCCCeeCCchH
Confidence            99999887766542     23467899999999999999877754321       1122345567788987654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2e-46  Score=477.62  Aligned_cols=555  Identities=20%  Similarity=0.239  Sum_probs=448.4

Q ss_pred             CCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccc
Q psy16377         97 LKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRAS  176 (1344)
Q Consensus        97 L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~  176 (1344)
                      .+.++.+++        .++.+|..+.  ++|++|+|++|.++.+++..|.++++|++|+|++|.++.+....|      
T Consensus        13 ~~~~~c~~~--------~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~------   76 (606)
T 3vq2_A           13 NITYQCMDQ--------KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW------   76 (606)
T ss_dssp             TTEEECTTS--------CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT------
T ss_pred             CCceEccCC--------CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHh------
Confidence            456777443        3455777665  799999999999999999889999999999999999988766544      


Q ss_pred             cccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCC
Q psy16377        177 AESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP  256 (1344)
Q Consensus       177 ~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  256 (1344)
                                 .++++|++|+|++|.++.+++. .|+++++|++|+|++|.+.++.+..|+++++|++|++++|.+..+.
T Consensus        77 -----------~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           77 -----------HGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             -----------TTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             -----------hchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence                       3489999999999999998665 7999999999999999999988788999999999999999998643


Q ss_pred             -hhhhcCCCCCcEEEcccCcccccChhhhcCCCCCC----EEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC-ccc
Q psy16377        257 -EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL----VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-RID  330 (1344)
Q Consensus       257 -~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~----~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~  330 (1344)
                       +..|.++++|++|++++|.+..+++..|+.+.+|+    .|++++|.++.  +....+... +|+.|++++|.+. ...
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~--~~~~~~~~~-~L~~L~L~~n~~~~~~~  221 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF--IQDQAFQGI-KLHELTLRGNFNSSNIM  221 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE--ECTTTTTTC-EEEEEEEESCCSCHHHH
T ss_pred             chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce--eCcccccCc-eeeeeeccCCccchhHH
Confidence             45679999999999999999998887776666554    89999999886  555566555 8999999999887 455


Q ss_pred             cccccCCCcccEEEecCCCc------cccchhhhcCCC--CccEEEc-cCCcccccccccccCCCceeEEEccCCcCCCC
Q psy16377        331 AKTFKDLVFLQRLDLRNNSI------GYIEDNAFLSLY--NLHTIYL-SENRIHHITAHLFNGLYVLSKLTLSNNLLVNI  401 (1344)
Q Consensus       331 ~~~~~~l~~L~~L~Ls~n~l------~~i~~~~f~~l~--~L~~L~L-s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  401 (1344)
                      +..+.+++.|+.+++..+.+      ..+....+..+.  .++.+.+ ..+.+.+..+. +..+++|+.|++++|.+..+
T Consensus       222 ~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l  300 (606)
T 3vq2_A          222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL  300 (606)
T ss_dssp             HHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC
T ss_pred             HHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh
Confidence            66788899999888765433      223333343333  4566677 66777777776 88999999999999999887


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCC--cccccC
Q psy16377        402 DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS--SGMLYE  479 (1344)
Q Consensus       402 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~  479 (1344)
                      .  .+..+++|+.|++++|.+..+| .+ .+++|++|++++|...+..  .+..+++|+.|++++|.++.+.  ...+..
T Consensus       301 ~--~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  374 (606)
T 3vq2_A          301 E--DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG  374 (606)
T ss_dssp             C--CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred             h--hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence            5  7888999999999999999998 45 9999999999999655433  5778999999999999997663  445789


Q ss_pred             CCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh--hHhhcCCCCcEEEcCCCCCccccCCCcC--CCccEE
Q psy16377        480 LPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN--GVFTYLAQLLWLNLSENHLVWFDYAMVP--GNLKWL  555 (1344)
Q Consensus       480 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~l~~~~~~~lp--~~L~~L  555 (1344)
                      +++|++|++++|.+..+. ..|..+++|+.|++++|.+..++  ..+..+++|+.|++++|.+.......+.  ++|+.|
T Consensus       375 ~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  453 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL  453 (606)
T ss_dssp             CSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence            999999999999998876 67889999999999999998765  4788999999999999999875544332  689999


Q ss_pred             EcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCC
Q psy16377        556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDI  633 (1344)
Q Consensus       556 ~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l  633 (1344)
                      ++++|.++.......+..+++|+.|++++|+++++.+..+.  ++|++|++++|++.+..|..|.++++|+.|++++|+|
T Consensus       454 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            99999998621122466788999999999999998776554  6899999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccC
Q psy16377        634 TKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYS  702 (1344)
Q Consensus       634 ~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~  702 (1344)
                      +.++.. +.  ..  .+.+..+++++||+.|+|.+.|+...-..       ....+.+.+.+.|..|..
T Consensus       534 ~~~p~~-~~--~l--~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-------~~~~~~~~~~~~C~~p~~  590 (606)
T 3vq2_A          534 ETSKGI-LQ--HF--PKSLAFFNLTNNSVACICEHQKFLQWVKE-------QKQFLVNVEQMTCATPVE  590 (606)
T ss_dssp             CCEESC-GG--GS--CTTCCEEECCSCCCCCSSTTHHHHTTTTT-------SSSSBSSGGGCCCC----
T ss_pred             cccCHh-Hh--hh--cccCcEEEccCCCcccCCccHHHHHHHHc-------CcccccCCccceeCCChH
Confidence            987764 21  11  13588999999999999999887653211       112344567788876543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.6e-46  Score=475.64  Aligned_cols=581  Identities=20%  Similarity=0.207  Sum_probs=333.8

Q ss_pred             EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377        220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH  299 (1344)
Q Consensus       220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~  299 (1344)
                      +.+.++-+++.+ |..+-  +++++|+|++|.++.+++..|.++++|++|+|++|.++.++++.|.++++|++|+|++|+
T Consensus        35 ~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCSSC-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            334444445444 32221  256666666666666666556666666666666666666655555556666666666555


Q ss_pred             CCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccc-hhhhcCCCCccEEEccCCcccccc
Q psy16377        300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE-DNAFLSLYNLHTIYLSENRIHHIT  378 (1344)
Q Consensus       300 l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~~  378 (1344)
                      +++  ++...|.++++|++|++++|.++.+.+..|+++++|+.|++++|.+..+. +..+..+++|+.|++++|++.++.
T Consensus       112 l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          112 IQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CCE--ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred             CCC--CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence            554  44444555555555555555555555444555555555555555544332 223344444444444444444443


Q ss_pred             cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCc-cCcchhcCCC
Q psy16377        379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK-IENGSFKNLQ  457 (1344)
Q Consensus       379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~  457 (1344)
                      +..|..+.+++                    ..+..++++.|.+..++........++.+++.+|.... +....+..+.
T Consensus       190 ~~~l~~L~~l~--------------------~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~  249 (635)
T 4g8a_A          190 CTDLRVLHQMP--------------------LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLA  249 (635)
T ss_dssp             GGGGHHHHTCT--------------------TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred             cccccchhhhh--------------------hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCc
Confidence            33332221111                    11234556666665555444444455566665554332 2233445555


Q ss_pred             CCcEEEcccCCC------CCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCc
Q psy16377        458 QLTDLRLVDNNI------GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL  531 (1344)
Q Consensus       458 ~L~~L~L~~n~l------~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~  531 (1344)
                      .++...+..+..      .......+..+..+..+.+..+.....                    ...+...+..+.+++
T Consensus       250 ~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~l~  309 (635)
T 4g8a_A          250 GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY--------------------LDGIIDLFNCLTNVS  309 (635)
T ss_dssp             TCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC--------------------EEECTTTTGGGTTCS
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhhccc--------------------ccchhhhhhhhcccc
Confidence            555444432221      111111122222233332222211110                    001122233344444


Q ss_pred             EEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCc
Q psy16377        532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS  611 (1344)
Q Consensus       532 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~  611 (1344)
                      .+++.++.+..+.......+++.|++.+|.+..+..    ..+..|+.++++.|.+.......-.++|+.|++++|.+..
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          310 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             EEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             cccccccccccccccccchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence            444444444333322333344455555554444332    1123455555555554443333223445555555555432


Q ss_pred             c--CCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCcc
Q psy16377        612 V--KPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKI  689 (1344)
Q Consensus       612 ~--~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~  689 (1344)
                      .  .+..+..+.+|+.+++..|.+..+....      .....+..+++.+|.....                        
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~------~~l~~L~~l~l~~~~~~~~------------------------  435 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNF------LGLEQLEHLDFQHSNLKQM------------------------  435 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEEECSCC------TTCTTCCEEECTTSEEEST------------------------
T ss_pred             ccccccchhhhhhhhhhhccccccccccccc------cccccccchhhhhcccccc------------------------
Confidence            2  2333444555666666555444322110      1111222222222111000                        


Q ss_pred             ccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCC
Q psy16377        690 MDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQIS  769 (1344)
Q Consensus       690 ~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~  769 (1344)
                      .                  +     ..                                                  .+.
T Consensus       436 ~------------------~-----~~--------------------------------------------------~~~  442 (635)
T 4g8a_A          436 S------------------E-----FS--------------------------------------------------VFL  442 (635)
T ss_dssp             T------------------S-----SC--------------------------------------------------TTT
T ss_pred             c------------------c-----cc--------------------------------------------------ccc
Confidence            0                  0     00                                                  000


Q ss_pred             CCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcc-cccccchhcCCCccceeecccccccccCcccccCc
Q psy16377        770 TVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI-EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL  848 (1344)
Q Consensus       770 ~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i-~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l  848 (1344)
                           -...++.+++++|.+..+.+..|.++++|+.|++++|++ ..+.+..|.++++|++|+|++|+|+.+++..|.++
T Consensus       443 -----~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l  517 (635)
T 4g8a_A          443 -----SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  517 (635)
T ss_dssp             -----TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             -----cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence                 012467788999999999999999999999999999974 56788999999999999999999999999999999


Q ss_pred             cccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCC-CCCcEEEecCCcccCCChhhHHHHHHHhhcC
Q psy16377        849 EKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCATLQELQTWIIDNS  927 (1344)
Q Consensus       849 ~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~-~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~  927 (1344)
                      ++|++|+|++|+|+++++..|..+++|++|+|++|+|+++++..+..+ ++|++|+|++|||+|||+ +.||++|++++.
T Consensus       518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~-~~~~~~wl~~~~  596 (635)
T 4g8a_A          518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWIKDQR  596 (635)
T ss_dssp             TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG-GHHHHHHHHHTT
T ss_pred             CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC-cHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999887 789999999999999999 799999999988


Q ss_pred             CccCCCCCeeecCCCCCCCccccccCCcccccC
Q psy16377        928 NKVKDGLDISCVIDESSPPIRKEIDLNSTTCTE  960 (1344)
Q Consensus       928 ~~v~~~~~~~C~~~~~~~~~~~~~~~~~~~C~~  960 (1344)
                      ..+.+..+++|..|....+ ....+++ ..|..
T Consensus       597 ~~~~~~~~~~C~~P~~~~g-~~l~~~~-~~C~~  627 (635)
T 4g8a_A          597 QLLVEVERMECATPSDKQG-MPVLSLN-ITCQM  627 (635)
T ss_dssp             TTBSCGGGCBBCSSTTTTT-CBGGGCC-CCC--
T ss_pred             CccCCCCCceeCCchHHCC-CEeeeec-cCCCC
Confidence            8888889999999987554 3445554 35763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.3e-45  Score=460.45  Aligned_cols=539  Identities=24%  Similarity=0.292  Sum_probs=352.7

Q ss_pred             CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377        219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN  298 (1344)
Q Consensus       219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n  298 (1344)
                      +.++.++.+++.+ |..+  .+++++|++++|.++.+++..|.++++|++|++++|.+..+++..|.++++|++|++++|
T Consensus        10 ~~~~c~~~~l~~i-p~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           10 ITYQCMELNFYKI-PDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             TEEECCSSCCSSC-CSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cEEEeCCCCcccc-CCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            4566666666655 3333  246777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccc-hhhhcCCCCccEEEccCCccccc
Q psy16377        299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE-DNAFLSLYNLHTIYLSENRIHHI  377 (1344)
Q Consensus       299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~f~~l~~L~~L~Ls~n~l~~~  377 (1344)
                      .++.  +....|.++++|++|++++|.+..+.+..|+++++|++|++++|.+..+. +..|.++++|+.|++++|.+.+.
T Consensus        87 ~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A           87 PIQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCCE--ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             cCCc--cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            7665  44556777777777777777777666655677777777777777766532 34566667777777777776666


Q ss_pred             ccccccCCCce----eEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcc
Q psy16377        378 TAHLFNGLYVL----SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENG  451 (1344)
Q Consensus       378 ~~~~~~~l~~L----~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~  451 (1344)
                      .+..+..+.+|    ..|++++|.+..+.+..|..+ +|+.|++++|...  .++..+..++.++.+.+....+..    
T Consensus       165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~----  239 (570)
T 2z63_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN----  239 (570)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC----
T ss_pred             cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC----
Confidence            66556555555    566666666666666555544 5666666665332  344555555555555443221110    


Q ss_pred             hhcCCCCCcEEEcccCCCCCCCcccccCCC--CccEEEcCCC-cCcccccccccCCCccceEeccccCCCChhhHhhcCC
Q psy16377        452 SFKNLQQLTDLRLVDNNIGNLSSGMLYELP--SLEVLNLSKN-KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLA  528 (1344)
Q Consensus       452 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~--~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~  528 (1344)
                          ...+          ..++...+..+.  .++.++++++ .+....+..|..+++|+.|++++|.++.+|..+..+ 
T Consensus       240 ----~~~l----------~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-  304 (570)
T 2z63_A          240 ----EGNL----------EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-  304 (570)
T ss_dssp             ----CSSC----------EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-
T ss_pred             ----chhh----------hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-
Confidence                0111          111111122221  2334444444 333444444555555555555555555555544444 


Q ss_pred             CCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCc
Q psy16377        529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNL  608 (1344)
Q Consensus       529 ~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~  608 (1344)
                      +|+.|++++|.+..++..                          .+++|+.|++++|.+.+..+....++|+.|++++|.
T Consensus       305 ~L~~L~l~~n~~~~l~~~--------------------------~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          305 GWQHLELVNCKFGQFPTL--------------------------KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             CCSEEEEESCBCSSCCBC--------------------------BCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CccEEeeccCcccccCcc--------------------------cccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            555555555554433221                          233445555555544433332223345555555555


Q ss_pred             CCccC--CCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCcccccc
Q psy16377        609 IKSVK--PHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQY  686 (1344)
Q Consensus       609 i~~~~--~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~  686 (1344)
                      +.+..  +..+.++++|+.|++++|.++++... +.     .                                      
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-----~--------------------------------------  394 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL-----G--------------------------------------  394 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE-----T--------------------------------------
T ss_pred             cCccccccccccccCccCEEECCCCcccccccc-cc-----c--------------------------------------
Confidence            54432  34455666777777766655543211 00     0                                      


Q ss_pred             CccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCC
Q psy16377        687 PKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ  766 (1344)
Q Consensus       687 ~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~  766 (1344)
                                                                                                      
T Consensus       395 --------------------------------------------------------------------------------  394 (570)
T 2z63_A          395 --------------------------------------------------------------------------------  394 (570)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCccEEEEeCCcccccCC-CcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccccc-ccCccc
Q psy16377        767 QISTVPPRIPMDATHVYLDGNTFKTIPN-HVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT-HFYGYE  844 (1344)
Q Consensus       767 ~l~~~p~~ip~~l~~L~L~~n~l~~l~~-~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~  844 (1344)
                               ...++.|++++|.+..+.. ..|.++++|+.|++++|++..+.+..|.++++|++|+|++|+++ ...+..
T Consensus       395 ---------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~  465 (570)
T 2z63_A          395 ---------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI  465 (570)
T ss_dssp             ---------CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred             ---------cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence                     0135667777777776644 56888999999999999999999999999999999999999998 345678


Q ss_pred             ccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHh
Q psy16377        845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWII  924 (1344)
Q Consensus       845 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~  924 (1344)
                      |..+++|++|+|++|+|+.+.+..|..+++|++|+|++|+++.+++..+..+++|+.|++++|||.|+|+...++..|++
T Consensus       466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~  545 (570)
T 2z63_A          466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  545 (570)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996444449999


Q ss_pred             hcCCccCCCCCeeecCCCC
Q psy16377        925 DNSNKVKDGLDISCVIDES  943 (1344)
Q Consensus       925 ~~~~~v~~~~~~~C~~~~~  943 (1344)
                      .+...+.+..  +|..|+.
T Consensus       546 ~~~~~~~~~~--~C~~~~~  562 (570)
T 2z63_A          546 KNSQKEQGSA--KCSGSGK  562 (570)
T ss_dssp             HTGGGEESCC--BBTTTCC
T ss_pred             hccccCCCch--hhCCCCC
Confidence            8877777666  9987643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.8e-44  Score=447.72  Aligned_cols=108  Identities=30%  Similarity=0.534  Sum_probs=82.0

Q ss_pred             cceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecC
Q psy16377        827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN  906 (1344)
Q Consensus       827 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~  906 (1344)
                      |++|+|++|+|+.+.    ..+++|++|+|++|+|+.|+..  ..+++|++|+|++|+|+.+++..+..+++|+.|++++
T Consensus       433 L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~  506 (549)
T 2z81_A          433 LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT  506 (549)
T ss_dssp             CSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred             ceEEECCCCChhhhc----ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence            444444444444432    3566777777777777777653  3468899999999999998888888899999999999


Q ss_pred             CcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377        907 NPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE  942 (1344)
Q Consensus       907 Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~  942 (1344)
                      |||.|+|+.+.|+..|++++...  +...++|..|+
T Consensus       507 N~~~~~~~~~~~l~~~l~~~~~~--~~~~~~C~~~~  540 (549)
T 2z81_A          507 NPWDCSCPRIDYLSRWLNKNSQK--EQGSAKCSGSG  540 (549)
T ss_dssp             SCBCCCHHHHHHHHHHHHHCTTT--EESCCBBTTTC
T ss_pred             CCccCCCccHHHHHHHHHhcccc--cCCCCeECCCC
Confidence            99999999778999999876543  56788998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.4e-42  Score=444.88  Aligned_cols=576  Identities=22%  Similarity=0.280  Sum_probs=332.3

Q ss_pred             eEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCE
Q psy16377         20 ISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKR   99 (1344)
Q Consensus        20 ~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~   99 (1344)
                      +.++|..+.++.+| .++   | .++++|+|++|.+    ..+++.+|.++++|++|+|++|+|+.+++++|+++++|++
T Consensus        34 ~~~~c~~~~l~~vP-~~l---p-~~~~~LdLs~N~i----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~  104 (635)
T 4g8a_A           34 ITYQCMELNFYKIP-DNL---P-FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST  104 (635)
T ss_dssp             TEEECTTSCCSSCC-SSS---C-TTCCEEECTTSCC----CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CEEECCCCCcCccC-CCC---C-cCCCEEEeeCCCC----CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCE
Confidence            36899999999998 555   3 5689999999998    5688889999999999999999999998888888888888


Q ss_pred             EEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhcccccc
Q psy16377        100 LTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAES  179 (1344)
Q Consensus       100 L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~  179 (1344)
                      |+|++|.+.       .+.+..|.++++|++|+|++|+++.+++..|+++++|++|+|++|.++.+....+         
T Consensus       105 L~Ls~N~l~-------~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~---------  168 (635)
T 4g8a_A          105 LILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY---------  168 (635)
T ss_dssp             EECTTCCCC-------EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG---------
T ss_pred             EEccCCcCC-------CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh---------
Confidence            888766543       2334567777777777777777777777667777777777777776665432211         


Q ss_pred             CCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC----CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCC
Q psy16377        180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL----QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL  255 (1344)
Q Consensus       180 ~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l  255 (1344)
                             +.++++|++|++++|+++.++.. .+..+.++    ..++++.|.+..+.+..+.. ..++.|++.+|...  
T Consensus       169 -------~~~l~~L~~L~L~~N~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~--  237 (635)
T 4g8a_A          169 -------FSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDS--  237 (635)
T ss_dssp             -------GGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSS--
T ss_pred             -------hccchhhhhhcccCccccccccc-cccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhccccc--
Confidence                   12255566666666665555433 33332222    24445555554443332222 23444444444222  


Q ss_pred             ChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC----CCCCcccccCCCcccEEEccCCCCCc---
Q psy16377        256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS----NHIDETTFIGLIRLIILNLSNNELTR---  328 (1344)
Q Consensus       256 ~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~----~~i~~~~~~~l~~L~~L~Ls~n~l~~---  328 (1344)
                                           ..+....+..+..++...+..+....    .......+..+..+....+..+....   
T Consensus       238 ---------------------~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  296 (635)
T 4g8a_A          238 ---------------------LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD  296 (635)
T ss_dssp             ---------------------HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred             ---------------------ccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence                                 12223334444444444433221110    00122233334444444443332211   


Q ss_pred             cccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcC
Q psy16377        329 IDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN  408 (1344)
Q Consensus       329 ~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  408 (1344)
                      .....+..+.+++.+.+.++.+..+..  +.....|+.|++.+|.+......   .+..|+.+++..|.+....  .+..
T Consensus       297 ~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~--~~~~  369 (635)
T 4g8a_A          297 GIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF--SEVD  369 (635)
T ss_dssp             ECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--CCCB
T ss_pred             chhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--cccc
Confidence            112234445566666666666655543  44455666666666665554432   2345556666665544432  2334


Q ss_pred             CCCCcEEEccCCCCC---ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccccCCCCcc
Q psy16377        409 CSALKELDLSSNAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLE  484 (1344)
Q Consensus       409 l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~  484 (1344)
                      +++|+.|+++.|.+.   ..+..+..+.+|+.|++..+.+..... .+..+++|+.+++..+.. ...+...|..+++|+
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~  448 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  448 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccccc-cccccccccchhhhhccccccccccccccccccc
Confidence            566666666666654   233444555666666666655444332 344555566666555544 222333445555555


Q ss_pred             EEEcCCCcCcccccccccCCCccceEeccccCCCC--hhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcC
Q psy16377        485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYI  562 (1344)
Q Consensus       485 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l  562 (1344)
                      .++++.|.+..+.+..+..++.|+.|++++|.+..  +|..|..                                    
T Consensus       449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------------------------------------  492 (635)
T 4g8a_A          449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------------------------------  492 (635)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------------------------------
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCchhhhh------------------------------------
Confidence            55555555555544444444444444444443211  1222223                                    


Q ss_pred             CCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccccc
Q psy16377        563 SSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTA  640 (1344)
Q Consensus       563 ~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~  640 (1344)
                                 +++|++|++++|+++++.+..+.  ++|++|+|++|+|.++.+..|.++++|+.|||++|+|+++.+..
T Consensus       493 -----------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  561 (635)
T 4g8a_A          493 -----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  561 (635)
T ss_dssp             -----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred             -----------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence                       34555555555555555544433  46677777777777777777888888888888888888887766


Q ss_pred             ccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcC
Q psy16377        641 LRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC  720 (1344)
Q Consensus       641 l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c  720 (1344)
                      +..    ...++..+++++|||.|||++.||...-+       .....+.+.+.+.|..|..  .++.++.++   ++.|
T Consensus       562 l~~----l~~~L~~L~L~~Np~~C~C~~~~~~~wl~-------~~~~~~~~~~~~~C~~P~~--~~g~~l~~~---~~~C  625 (635)
T 4g8a_A          562 LQH----FPSSLAFLNLTQNDFACTCEHQSFLQWIK-------DQRQLLVEVERMECATPSD--KQGMPVLSL---NITC  625 (635)
T ss_dssp             TTC----CCTTCCEEECTTCCBCCSGGGHHHHHHHH-------HTTTTBSCGGGCBBCSSTT--TTTCBGGGC---CCCC
T ss_pred             HHh----hhCcCCEEEeeCCCCcccCCcHHHHHHHH-------hCCCccCCCCCceeCCchH--HCCCEeeee---ccCC
Confidence            531    11468889999999999999999875321       1122355677889987754  445566665   3445


Q ss_pred             CCC
Q psy16377        721 PYD  723 (1344)
Q Consensus       721 ~~~  723 (1344)
                      +..
T Consensus       626 ~~~  628 (635)
T 4g8a_A          626 QMT  628 (635)
T ss_dssp             ---
T ss_pred             CCC
Confidence            544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=9.5e-43  Score=438.33  Aligned_cols=204  Identities=20%  Similarity=0.309  Sum_probs=102.0

Q ss_pred             CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc---ccccCCCccceEeccccCCCChh---hHhhcCCCC
Q psy16377        457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI---GTFEKNKRLAAIRLDSNFLTDIN---GVFTYLAQL  530 (1344)
Q Consensus       457 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~n~l~~l~---~~~~~l~~L  530 (1344)
                      .+|+.|++++|.++.++...+..+++|++|++++|++.+..+   ..+..+++|+.|++++|.++.++   ..+..+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            344444444444444444333344444444444444443221   12334444444444444444443   224444455


Q ss_pred             cEEEcCCCCCccccCC-CcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcC
Q psy16377        531 LWLNLSENHLVWFDYA-MVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLI  609 (1344)
Q Consensus       531 ~~L~Ls~n~l~~~~~~-~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i  609 (1344)
                      +.|++++|+++.++.. ..+++|+.|++++|.++.++...    .++|+.|++++|+++++.  .-.++|++|+|++|++
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSFS--LFLPRLQELYISRNKL  463 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTS----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCCcccccchh----cCCceEEECCCCChhhhc--ccCChhcEEECCCCcc
Confidence            5555555544433221 11234555555555544443311    124555555555555443  1123456666666666


Q ss_pred             CccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCccccccc-Cccccc
Q psy16377        610 KSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCS-MDWLPI  673 (1344)
Q Consensus       610 ~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~-~~~l~~  673 (1344)
                      +.+..  ...+++|+.|++++|+++++.+..+.     ....+..+++++||+.|+|. ..|+..
T Consensus       464 ~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~~~~~~~l~~  521 (549)
T 2z81_A          464 KTLPD--ASLFPVLLVMKISRNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCPRIDYLSR  521 (549)
T ss_dssp             SSCCC--GGGCTTCCEEECCSSCCCCCCTTGGG-----GCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred             CcCCC--cccCccCCEEecCCCccCCcCHHHHh-----cCcccCEEEecCCCccCCCccHHHHHH
Confidence            53322  34466677777777777666554432     23456777888999999998 456543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=422.64  Aligned_cols=159  Identities=23%  Similarity=0.331  Sum_probs=133.1

Q ss_pred             ccEEEEeCCcccccCC--CcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCccccceee
Q psy16377        779 ATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELY  855 (1344)
Q Consensus       779 l~~L~L~~n~l~~l~~--~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  855 (1344)
                      ++.|++++|++++++.  ..|.++++|+.|++++|+++. ++...|.++++|+.|+|++|+++...+..+.  ++|+.|+
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~  427 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD  427 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence            5566666666665543  347778899999999999988 7777789999999999999999765544443  7999999


Q ss_pred             ccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHH-HHHHhhcCCccCCCC
Q psy16377        856 LQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQEL-QTWIIDNSNKVKDGL  934 (1344)
Q Consensus       856 L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l-~~w~~~~~~~v~~~~  934 (1344)
                      |++|+|+.++...+ .+++|++|+|++|+|+.++...+..+++|++|++++|||.|+|+ +.|| ..|++++...  +..
T Consensus       428 Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~~~~~~~~~~--~~~  503 (520)
T 2z7x_B          428 LHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLSRWLNKNSQK--EQG  503 (520)
T ss_dssp             CCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH-HHHHHHHHHHHTTTT--EES
T ss_pred             CCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC-chHHHHHHHHhcccc--CCC
Confidence            99999999987766 89999999999999999999888889999999999999999999 6899 9999876543  567


Q ss_pred             CeeecCCCC
Q psy16377        935 DISCVIDES  943 (1344)
Q Consensus       935 ~~~C~~~~~  943 (1344)
                      +++|..|+.
T Consensus       504 ~~~C~~p~~  512 (520)
T 2z7x_B          504 SAKCSGSGK  512 (520)
T ss_dssp             CCBBTTTCC
T ss_pred             CCCcCCccc
Confidence            899988753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=423.89  Aligned_cols=475  Identities=23%  Similarity=0.304  Sum_probs=400.9

Q ss_pred             EEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEE
Q psy16377         21 SVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRL  100 (1344)
Q Consensus        21 ~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L  100 (1344)
                      .++|....+..+| ..+   + .+++.|++++|.+    ..+++.+|.++++|++|+|++|++..+++.+|+++++|++|
T Consensus        11 ~~~c~~~~l~~ip-~~l---~-~~l~~L~Ls~n~l----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L   81 (570)
T 2z63_A           11 TYQCMELNFYKIP-DNL---P-FSTKNLDLSFNPL----RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL   81 (570)
T ss_dssp             EEECCSSCCSSCC-SSS---C-SSCCEEECCSCCC----CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             EEEeCCCCccccC-CCc---c-ccccEEEccCCcc----CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEE
Confidence            6899999999998 433   2 5699999999998    45777899999999999999999999998999999999999


Q ss_pred             EcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCC-Ccchhhhcccccc
Q psy16377        101 TINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDID-TLGFAVRRASAES  179 (1344)
Q Consensus       101 ~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~~~~~~~~  179 (1344)
                      +|++|.+.       ...|..|.++++|++|++++|.++.++...++++++|++|++++|.++.+. +..          
T Consensus        82 ~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~----------  144 (570)
T 2z63_A           82 ILTGNPIQ-------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY----------  144 (570)
T ss_dssp             ECTTCCCC-------EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG----------
T ss_pred             eCcCCcCC-------ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh----------
Confidence            99877653       355688999999999999999999999877999999999999999988753 222          


Q ss_pred             CCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC----CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC--
Q psy16377        180 NSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL----QNLHLENNEISQIAPNAFVALSSLRILNISSNHLV--  253 (1344)
Q Consensus       180 ~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L----~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~--  253 (1344)
                             ++++++|++|++++|.++.++.. .++.+++|    +.|++++|.+.++.+..+..+ +|+.|++++|...  
T Consensus       145 -------~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~  215 (570)
T 2z63_A          145 -------FSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLN  215 (570)
T ss_dssp             -------GGGCTTCCEEECTTSCCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTT
T ss_pred             -------hcccCCCCEEeCcCCccceecHH-HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccccccc
Confidence                   24489999999999999988765 68888888    899999999999988888776 8999999987322  


Q ss_pred             -----------------------------CCChhhhcCCCC--CcEEEcccC-cccccChhhhcCCCCCCEEEccCCCCC
Q psy16377        254 -----------------------------SLPEGLFSSCRD--ISEIYAQKN-SLVELSRGLFHKLEQLLVLDLSSNHLS  301 (1344)
Q Consensus       254 -----------------------------~l~~~~f~~l~~--L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~n~l~  301 (1344)
                                                   .++...|..+.+  ++.+++.++ .+....+..|..+++|+.|++++|.+.
T Consensus       216 ~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  295 (570)
T 2z63_A          216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE  295 (570)
T ss_dssp             HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC
T ss_pred             chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch
Confidence                                         222233333332  345555555 555556667788999999999999887


Q ss_pred             CCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc--c
Q psy16377        302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--A  379 (1344)
Q Consensus       302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~--~  379 (1344)
                      .  + +..+..+ +|+.|++++|.+..++.   ..+++|+.|++++|.+......  ..+++|+.|++++|.+.+..  +
T Consensus       296 ~--l-~~~~~~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~  366 (570)
T 2z63_A          296 R--V-KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCS  366 (570)
T ss_dssp             S--C-CBCCSCC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEE
T ss_pred             h--h-hhhhccC-CccEEeeccCcccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccc
Confidence            5  3 4456667 99999999999986654   4678999999999987755442  67899999999999998775  6


Q ss_pred             ccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc--hhhcCCCCccEEEccCCCCCccCcchhcCCC
Q psy16377        380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP--SALSELPFLKTLDLGENQISKIENGSFKNLQ  457 (1344)
Q Consensus       380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  457 (1344)
                      ..+.++++|+.|++++|.+.++.+. +..+++|+.|++++|.+..++  ..+..+++|++|++++|.+.+..+..|.+++
T Consensus       367 ~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  445 (570)
T 2z63_A          367 QSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  445 (570)
T ss_dssp             HHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred             ccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCC
Confidence            6788999999999999999888665 889999999999999998664  3688999999999999999999999999999


Q ss_pred             CCcEEEcccCCCC--CCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEE
Q psy16377        458 QLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLN  534 (1344)
Q Consensus       458 ~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~  534 (1344)
                      +|+.|++++|.+.  .++ ..+..+++|++|++++|+++.+.+..|..+++|+.|++++|.+++++ ..+..+++|+.|+
T Consensus       446 ~L~~L~l~~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          446 SLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cCcEEECcCCcCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE
Confidence            9999999999985  355 45889999999999999999998889999999999999999999876 5688999999999


Q ss_pred             cCCCCCc
Q psy16377        535 LSENHLV  541 (1344)
Q Consensus       535 Ls~n~l~  541 (1344)
                      +++|.+.
T Consensus       525 l~~N~~~  531 (570)
T 2z63_A          525 LHTNPWD  531 (570)
T ss_dssp             CCSSCBC
T ss_pred             ecCCccc
Confidence            9999886

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.4e-40  Score=412.12  Aligned_cols=157  Identities=25%  Similarity=0.316  Sum_probs=130.6

Q ss_pred             ccEEEEeCCcccccCC--CcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCcccccCc-ccccee
Q psy16377        779 ATHVYLDGNTFKTIPN--HVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNL-EKLSEL  854 (1344)
Q Consensus       779 l~~L~L~~n~l~~l~~--~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l-~~L~~L  854 (1344)
                      ++.|++++|+++.++.  ..|.++++|+.|++++|+++. ++...|.++++|++|+|++|+++...+   ..+ ++|+.|
T Consensus       379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~~L~~L  455 (562)
T 3a79_B          379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---RCLPPKVKVL  455 (562)
T ss_dssp             CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---SSCCTTCSEE
T ss_pred             CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---hhhcCcCCEE
Confidence            4556666666666553  347778889999999999988 777789999999999999999876433   444 699999


Q ss_pred             eccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHH-HHhhcCCccC--
Q psy16377        855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT-WIIDNSNKVK--  931 (1344)
Q Consensus       855 ~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~-w~~~~~~~v~--  931 (1344)
                      +|++|+|+.|++..+ .+++|++|+|++|+|+.+++..+..+++|+.|++++|||.|+|+ +.||.. |++.....+.  
T Consensus       456 ~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~-~~~~~~~~~~~~~~~~~~~  533 (562)
T 3a79_B          456 DLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEWINKHSGVVRNS  533 (562)
T ss_dssp             ECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH-HHHHHHHHHHHTTTTEECS
T ss_pred             ECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc-hHHHHHHHHHhcCCccccc
Confidence            999999999988887 89999999999999999999888899999999999999999999 688865 9887766654  


Q ss_pred             ----CCCCeeecC
Q psy16377        932 ----DGLDISCVI  940 (1344)
Q Consensus       932 ----~~~~~~C~~  940 (1344)
                          ...+++|..
T Consensus       534 ~~~~~~~~~~C~~  546 (562)
T 3a79_B          534 AGSVAPDSAKCSG  546 (562)
T ss_dssp             SSSBCSSSSCBSS
T ss_pred             ccCCCCCCCccCC
Confidence                346788876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4e-40  Score=411.43  Aligned_cols=459  Identities=18%  Similarity=0.207  Sum_probs=363.9

Q ss_pred             CEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcC
Q psy16377        153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA  232 (1344)
Q Consensus       153 ~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~  232 (1344)
                      ++|++++|.++.++..                  +  .++|++|+|++|.++.+++. .|.++++|++|+|++|.++++.
T Consensus         3 ~~l~ls~n~l~~ip~~------------------~--~~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~   61 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKD------------------L--SQKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLD   61 (520)
T ss_dssp             CEEECTTSCCSSCCCS------------------C--CTTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEE
T ss_pred             ceEecCCCCccccccc------------------c--cccccEEECCCCcccccChh-hccccccccEEecCCCccCCcC
Confidence            4678888888776642                  1  36899999999999988765 7889999999999999999988


Q ss_pred             hhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccC-hhhhcCCCCCCEEEccCCCCCCCCCCccccc
Q psy16377        233 PNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS-RGLFHKLEQLLVLDLSSNHLSSNHIDETTFI  311 (1344)
Q Consensus       233 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~  311 (1344)
                      |.+|+++++|++|+|++|.++.+|..   .+++|++|++++|.+..++ +..|+++++|++|++++|.+.+     ..+.
T Consensus        62 ~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~  133 (520)
T 2z7x_B           62 ISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVL  133 (520)
T ss_dssp             GGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGG
T ss_pred             hHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhcc
Confidence            88999999999999999999988875   7899999999999998753 3567899999999999998764     4566


Q ss_pred             CCCcc--cEEEccCCCC--CccccccccCCC-cccEEEecCCCcc-ccchhhhcCCCCccEEEccCCc-------ccccc
Q psy16377        312 GLIRL--IILNLSNNEL--TRIDAKTFKDLV-FLQRLDLRNNSIG-YIEDNAFLSLYNLHTIYLSENR-------IHHIT  378 (1344)
Q Consensus       312 ~l~~L--~~L~Ls~n~l--~~~~~~~~~~l~-~L~~L~Ls~n~l~-~i~~~~f~~l~~L~~L~Ls~n~-------l~~~~  378 (1344)
                      .+++|  +.|++++|.+  .+..+..+..+. ....+++++|.+. .++...+..+++|+.|++++|.       +.+..
T Consensus       134 ~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  213 (520)
T 2z7x_B          134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL  213 (520)
T ss_dssp             GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH
T ss_pred             ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch
Confidence            77777  9999999988  666666666655 3445677777754 4555667788999999999886       55555


Q ss_pred             cccccCCCceeEEEccCCcCCCCChhhhc---CCCCCcEEEccCCCCC-ccchhh-----cCCCCccEEEccCCCCCccC
Q psy16377        379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFK---NCSALKELDLSSNAIV-EIPSAL-----SELPFLKTLDLGENQISKIE  449 (1344)
Q Consensus       379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~n~l~-~lp~~l-----~~l~~L~~L~Ls~n~i~~~~  449 (1344)
                      + .+..+++|+.|++++|.+.+.....+.   .+++|+.|++++|.+. .+|..+     ..++.|+.+++++|.+ .++
T Consensus       214 ~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p  291 (520)
T 2z7x_B          214 A-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFP  291 (520)
T ss_dssp             H-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSC
T ss_pred             h-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecc
Confidence            4 578889999999988877653222111   2468999999999888 788887     8899999999999988 554


Q ss_pred             cchhcCC---CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh---hhH
Q psy16377        450 NGSFKNL---QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI---NGV  523 (1344)
Q Consensus       450 ~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~  523 (1344)
                      ...+..+   .+|+.|++++|.+..++.  +..+++|++|++++|++++..+..+..+++|+.|++++|.++++   |..
T Consensus       292 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          292 QSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             THHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             hhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence            3444444   679999999998866542  36788999999999999887777888899999999999998864   456


Q ss_pred             hhcCCCCcEEEcCCCCCcc-ccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEE
Q psy16377        524 FTYLAQLLWLNLSENHLVW-FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVL  602 (1344)
Q Consensus       524 ~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L  602 (1344)
                      +..+++|+.|++++|++.. ++..                       .+..+++|+.|++++|++++..+..++.+|+.|
T Consensus       370 ~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L  426 (520)
T 2z7x_B          370 TTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL  426 (520)
T ss_dssp             HTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred             HhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEEECcCCCCCcchhhhhcccCCEE
Confidence            8888888888888888764 3221                       123356788999999998877777777889999


Q ss_pred             EcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccc-cc
Q psy16377        603 FINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWL-PI  673 (1344)
Q Consensus       603 ~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l-~~  673 (1344)
                      ++++|+|.. +|..+..+++|+.|++++|+|+.++...+     .....+..+++++||+.|+|.+.|+ ..
T Consensus       427 ~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~N~~~c~c~~~~~~~~  492 (520)
T 2z7x_B          427 DLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIF-----DRLTSLQKIWLHTNPWDCSCPRIDYLSR  492 (520)
T ss_dssp             ECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTT-----TTCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred             ECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHh-----ccCCcccEEECcCCCCcccCCchHHHHH
Confidence            999999984 45556699999999999999998776533     3456799999999999999999998 54

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.2e-37  Score=389.98  Aligned_cols=461  Identities=20%  Similarity=0.179  Sum_probs=263.1

Q ss_pred             CCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCC
Q psy16377        127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTL  206 (1344)
Q Consensus       127 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l  206 (1344)
                      ..+++++++|+++.+|...   .++|++|+|++|.++.++...|                 .++++|++|+|++|+++.+
T Consensus        32 ~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~-----------------~~l~~L~~L~Ls~N~l~~~   91 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDI-----------------SFLSELRVLRLSHNRIRSL   91 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGT-----------------TTCTTCCEEECCSCCCCEE
T ss_pred             CCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhh-----------------ccCCCccEEECCCCCCCcC
Confidence            3356666666666666542   1556666666665555443322                 2245555555555555555


Q ss_pred             CCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCC-hhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377        207 GDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP-EGLFSSCRDISEIYAQKNSLVELSRGLFH  285 (1344)
Q Consensus       207 ~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~~L~~L~L~~n~l~~l~~~~~~  285 (1344)
                      ++. .|.++++|++|+|++|.++.+. ..  .+++|++|++++|.+..++ +..|.++++|++|++++|.+....   |.
T Consensus        92 ~~~-~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~  164 (562)
T 3a79_B           92 DFH-VFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LL  164 (562)
T ss_dssp             CTT-TTTTCTTCCEEECTTSCCCEEC-SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TG
T ss_pred             CHH-HhCCCCCCCEEECCCCcCCccC-cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hh
Confidence            443 4555555555555555555442 22  4555555555555555544 234455555555555555544322   22


Q ss_pred             CCCCC--CEEEccCCCC--CCCCCCcccccCCC-cccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377        286 KLEQL--LVLDLSSNHL--SSNHIDETTFIGLI-RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS  360 (1344)
Q Consensus       286 ~l~~L--~~L~Ls~n~l--~~~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~  360 (1344)
                      .+++|  +.|++++|.+  ++  .....+..+. ..-.+++++|.+...                       +....+..
T Consensus       165 ~l~~L~L~~L~L~~n~l~~~~--~~~~~l~~l~~~~l~l~l~~n~~~~~-----------------------~~~~~~~~  219 (562)
T 3a79_B          165 PVAHLHLSCILLDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFSV-----------------------QVNMSVNA  219 (562)
T ss_dssp             GGTTSCEEEEEEEESSCCCCS--SSCCEEEECCEEEEEEEECSSSCCCC-----------------------CCEEEESS
T ss_pred             hhhhceeeEEEeecccccccc--cCcccccccCcceEEEEecCccchhh-----------------------hhhhcccc
Confidence            23333  5555555544  22  2222333222 111234444443331                       22222333


Q ss_pred             CCCccEEEccCCcc-----cccccccccCCCceeEEEccCCcCCCCChh---hhcCCCCCcEEEccCCCCC-ccchhh--
Q psy16377        361 LYNLHTIYLSENRI-----HHITAHLFNGLYVLSKLTLSNNLLVNIDSK---AFKNCSALKELDLSSNAIV-EIPSAL--  429 (1344)
Q Consensus       361 l~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~-~lp~~l--  429 (1344)
                      +++|+.+++++|..     .+. ...+.+++.|+.|++.++.+.+....   .....++|++|++++|.+. .+|..+  
T Consensus       220 l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~  298 (562)
T 3a79_B          220 LGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT  298 (562)
T ss_dssp             EEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCC
T ss_pred             cceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhh
Confidence            44444444444421     111 11233444444444444433221100   0111235666666666655 555554  


Q ss_pred             ---cCCCCccEEEccCCCCCccCcchhcC---CCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccC
Q psy16377        430 ---SELPFLKTLDLGENQISKIENGSFKN---LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEK  503 (1344)
Q Consensus       430 ---~~l~~L~~L~Ls~n~i~~~~~~~~~~---l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  503 (1344)
                         ..++.|+.+++..+.+ .++...+..   ..+|+.|++++|.+..+..  ...+++|++|++++|++++..+..+..
T Consensus       299 ~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~  375 (562)
T 3a79_B          299 YSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCST  375 (562)
T ss_dssp             CCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCS
T ss_pred             cccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcc
Confidence               4555555555555555 332222222   2457777777777654431  256777888888888777766677777


Q ss_pred             CCccceEeccccCCCChh---hHhhcCCCCcEEEcCCCCCcc-ccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccE
Q psy16377        504 NKRLAAIRLDSNFLTDIN---GVFTYLAQLLWLNLSENHLVW-FDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKN  579 (1344)
Q Consensus       504 l~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~  579 (1344)
                      +++|+.|++++|.++.++   ..+..+++|+.|++++|++.. ++..                       .+..+++|+.
T Consensus       376 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----------------------~~~~l~~L~~  432 (562)
T 3a79_B          376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR-----------------------TCAWAESILV  432 (562)
T ss_dssp             CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC-----------------------CCCCCTTCCE
T ss_pred             cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh-----------------------hhcCcccCCE
Confidence            778888888888777543   456777788888877777753 2211                       1234567888


Q ss_pred             EECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCC
Q psy16377        580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGG  659 (1344)
Q Consensus       580 L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~  659 (1344)
                      |++++|++++..+..++.+|+.|++++|+|..+.+.. .++++|+.|++++|+|+.++...+     .....+..+++++
T Consensus       433 L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~~~~~-----~~l~~L~~L~l~~  506 (562)
T 3a79_B          433 LNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDV-THLQALQELNVASNQLKSVPDGVF-----DRLTSLQYIWLHD  506 (562)
T ss_dssp             EECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTT-TSSCCCSEEECCSSCCCCCCTTST-----TTCTTCCCEECCS
T ss_pred             EECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhh-cCCCCCCEEECCCCCCCCCCHHHH-----hcCCCCCEEEecC
Confidence            9999998887777777778999999999998655444 499999999999999998876533     3456788999999


Q ss_pred             CcccccccCcccc
Q psy16377        660 NPFDCDCSMDWLP  672 (1344)
Q Consensus       660 Np~~C~c~~~~l~  672 (1344)
                      ||+.|+|.+.|+.
T Consensus       507 N~~~c~c~~~~~~  519 (562)
T 3a79_B          507 NPWDCTCPGIRYL  519 (562)
T ss_dssp             CCBCCCHHHHHHH
T ss_pred             CCcCCCcchHHHH
Confidence            9999999998883

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.2e-37  Score=394.41  Aligned_cols=440  Identities=18%  Similarity=0.279  Sum_probs=236.4

Q ss_pred             CCCCCCcccccCCCCce---eEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEee
Q psy16377          3 EVPENCSWKMENESMNR---ISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKIS   79 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~---~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls   79 (1344)
                      .+|..|.|....+.+.|   ..|.|..+               .+++.|+|+++.+   .+.++ .+|+++++|++|+|+
T Consensus        53 ~~~~~~~W~~~~~~c~w~~~~GV~C~~~---------------~~V~~L~L~~~~l---~g~lp-~~l~~L~~L~~L~Ls  113 (636)
T 4eco_A           53 GTQPGANWNFNKELDMWGAQPGVSLNSN---------------GRVTGLSLEGFGA---SGRVP-DAIGQLTELEVLALG  113 (636)
T ss_dssp             -----CCCCCSSCGGGTTCCTTEEECTT---------------CCEEEEECTTSCC---EEEEC-GGGGGCTTCCEEESC
T ss_pred             CCccCCCCCCCCCcccccCCCCeEEcCC---------------CCEEEEEecCccc---CCcCC-hHHhcCccceEEECc
Confidence            46777889766666778   78999531               3589999999998   36777 689999999999999


Q ss_pred             CCcCC-------------ccChhhhcCCCCCCEEEcccccCccc------------------------------------
Q psy16377         80 NCKLV-------------ELPVDVFSGLRNLKRLTINTRNLQWD------------------------------------  110 (1344)
Q Consensus        80 ~~~i~-------------~l~~~~f~~l~~L~~L~Ls~n~~~~~------------------------------------  110 (1344)
                      +|.+.             .+|...   +.+|+ ++++.+.+...                                    
T Consensus       114 ~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~  189 (636)
T 4eco_A          114 SHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG  189 (636)
T ss_dssp             CGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTT
T ss_pred             CCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhc
Confidence            99652             222111   11222 22222111100                                    


Q ss_pred             -CCcccccCCCcCCCCCCCCEEEccCCCCCc------------------cChhhhc--CCCCCCEEECCCCCCCCCCCcc
Q psy16377        111 -KSKKLDLVPGSLDGLRELQVLNISSSNIKS------------------ISDDVFC--SLANIQTLNLSRNSIRDIDTLG  169 (1344)
Q Consensus       111 -~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~------------------i~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~  169 (1344)
                       .+..+..+|..|+++++|++|+|++|.++.                  +|.. ++  ++++|++|+|++|.+...-+..
T Consensus       190 ~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~  268 (636)
T 4eco_A          190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTF  268 (636)
T ss_dssp             CCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTT
T ss_pred             cccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHH
Confidence             011222255556666666666666666655                  4432 44  5666666666666544321111


Q ss_pred             hhhhccccccCCCCccccCCCCcccEEECCCCC-CCC--CCCCccCCCC------CCCCEEEccCCCCCCcChh--hhcC
Q psy16377        170 FAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRT--LGDYSGITKF------RRLQNLHLENNEISQIAPN--AFVA  238 (1344)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~--l~~~~~l~~l------~~L~~L~Ls~n~i~~~~~~--~~~~  238 (1344)
                                       +.++++|++|++++|+ +++  +|.  .+..+      ++|++|++++|.++. .|.  .+++
T Consensus       269 -----------------l~~l~~L~~L~Ls~n~~l~~~~lp~--~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~  328 (636)
T 4eco_A          269 -----------------LKALPEMQLINVACNRGISGEQLKD--DWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQK  328 (636)
T ss_dssp             -----------------TTTCSSCCEEECTTCTTSCHHHHHH--HHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTT
T ss_pred             -----------------HhcCCCCCEEECcCCCCCccccchH--HHHhhhccccCCCCCEEECCCCcCCc-cCchhhhcc
Confidence                             2235566666666665 553  333  23333      566666666666653 344  5666


Q ss_pred             CCCccEEEeeCCCCC-CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCC-CCEEEccCCCCCCCCCCcccccCC--C
Q psy16377        239 LSSLRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQ-LLVLDLSSNHLSSNHIDETTFIGL--I  314 (1344)
Q Consensus       239 l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~Ls~n~l~~~~i~~~~~~~l--~  314 (1344)
                      +++|++|++++|.+. .+|  .|..+++|++|++++|.+..+|.. |..+++ |+.|++++|.++.  ++ ..+..+  +
T Consensus       329 l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~--lp-~~~~~~~l~  402 (636)
T 4eco_A          329 MKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKY--IP-NIFDAKSVS  402 (636)
T ss_dssp             CTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSS--CC-SCCCTTCSS
T ss_pred             CCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcc--cc-hhhhhcccC
Confidence            666666666666655 455  445555666666666665555544 355555 6666666665553  22 233332  2


Q ss_pred             cccEEEccCCCCCcccccccc-------CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCC-
Q psy16377        315 RLIILNLSNNELTRIDAKTFK-------DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY-  386 (1344)
Q Consensus       315 ~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-  386 (1344)
                      +|+.|++++|.+.+..+..|.       .+.+|+.|++++|.+..++...|..+++|+.|++++|.+..++...+.... 
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~  482 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE  482 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence            566666666666555555454       445566666666666655555555556666666666665544443333222 


Q ss_pred             ------ceeEEEccCCcCCCCChhhhc--CCCCCcEEEccCCCCCccchhhcCCCCccEEEc------cCCCCCccCcch
Q psy16377        387 ------VLSKLTLSNNLLVNIDSKAFK--NCSALKELDLSSNAIVEIPSALSELPFLKTLDL------GENQISKIENGS  452 (1344)
Q Consensus       387 ------~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L------s~n~i~~~~~~~  452 (1344)
                            +|+.|++++|.+..++ ..+.  .+++|+.|+|++|.+..+|..+..+++|++|++      ++|.+.+..+..
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~  561 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG  561 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT
T ss_pred             cccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH
Confidence                  5555555555555433 2232  555555555555555555555555555555555      234444444445


Q ss_pred             hcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       453 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      +..+++|+.|++++|.++.+|...+   ++|+.|++++|++..+
T Consensus       562 l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          562 ITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISI  602 (636)
T ss_dssp             GGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEE
T ss_pred             HhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccc
Confidence            5555555555555555555544321   4555555555544433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-36  Score=371.51  Aligned_cols=165  Identities=28%  Similarity=0.423  Sum_probs=153.1

Q ss_pred             CCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeec
Q psy16377        777 MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL  856 (1344)
Q Consensus       777 ~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  856 (1344)
                      ..++.|++++|.+..+.+..|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+.+..|.++++|++|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCe
Q psy16377        857 QENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDI  936 (1344)
Q Consensus       857 ~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~  936 (1344)
                      ++|+|+.+.+..|..+++|++|+|++|+|+.+++..+..+++|++|++++|||.|+|+.+.|+..|++.+...  .....
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~--~~~~~  432 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQGSA  432 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTTT--EESCC
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCccc--eeeee
Confidence            9999999999999999999999999999999999999999999999999999999999789999999876543  34567


Q ss_pred             eecCCCC
Q psy16377        937 SCVIDES  943 (1344)
Q Consensus       937 ~C~~~~~  943 (1344)
                      .|..++.
T Consensus       433 ~c~~~~~  439 (455)
T 3v47_A          433 KCSGSGK  439 (455)
T ss_dssp             BBTTTCC
T ss_pred             eecCCCc
Confidence            8877543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.3e-37  Score=395.25  Aligned_cols=438  Identities=16%  Similarity=0.220  Sum_probs=260.2

Q ss_pred             CcceEEEeeeCcccccccCCCcccccCCCCCCEEEe-eCCcCCcc-Chhhh-----------------------------
Q psy16377         43 DLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKI-SNCKLVEL-PVDVF-----------------------------   91 (1344)
Q Consensus        43 ~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~L-s~~~i~~l-~~~~f-----------------------------   91 (1344)
                      .+++.|+|+++.+   .+.++ .+|+++++|++|+| ++|.+... +....                             
T Consensus       323 ~~V~~L~Ls~~~L---~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~  398 (876)
T 4ecn_A          323 GRVTGLSLAGFGA---KGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL  398 (876)
T ss_dssp             SCEEEEECTTTCC---EEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGG
T ss_pred             CCEEEEECccCCC---CCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcch
Confidence            3589999999998   36677 68999999999999 77755322 10000                             


Q ss_pred             ---------------------cCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCc----------
Q psy16377         92 ---------------------SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKS----------  140 (1344)
Q Consensus        92 ---------------------~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~----------  140 (1344)
                                           .....++.+.+..      .+..+..+|..|+++++|++|+|++|.++.          
T Consensus       399 ~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~------~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~  472 (876)
T 4ecn_A          399 NLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN------LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA  472 (876)
T ss_dssp             GSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTC------CSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred             hhhHHHHHHhhhCccccccccccccchhhceecc------ccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccc
Confidence                                 0001111111110      111222256667777777777777777766          


Q ss_pred             --------cChhh-hcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC-CCC--CCC
Q psy16377        141 --------ISDDV-FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK-LRT--LGD  208 (1344)
Q Consensus       141 --------i~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~-l~~--l~~  208 (1344)
                              +|... |.++++|++|+|++|.+...-+..                 +.++++|+.|+|++|+ +++  +|.
T Consensus       473 s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-----------------l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-----------------LYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-----------------GGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             ccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-----------------HhCCCCCCEEECcCCCCcccccchH
Confidence                    55432 226777777777776644322221                 2236677777777776 554  332


Q ss_pred             C-----ccCCCCCCCCEEEccCCCCCCcChh--hhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccCh
Q psy16377        209 Y-----SGITKFRRLQNLHLENNEISQIAPN--AFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSR  281 (1344)
Q Consensus       209 ~-----~~l~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~  281 (1344)
                      .     ..+..+++|+.|+|++|.+.. +|.  .|+++++|++|+|++|.+..+|  .|..+++|+.|+|++|.+..+|.
T Consensus       536 ~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~  612 (876)
T 4ecn_A          536 DWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPE  612 (876)
T ss_dssp             HHHHHHHCTTTTTTCCEEECCSSCCCB-CCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCT
T ss_pred             HHHhhhhcccccCCccEEEeeCCcCCc-cCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchH
Confidence            1     012334467777777777763 355  6677777777777777766666  45667777777777777666554


Q ss_pred             hhhcCCCC-CCEEEccCCCCCCCCCCcccccCCC--cccEEEccCCCCCccccccc---c--CCCcccEEEecCCCcccc
Q psy16377        282 GLFHKLEQ-LLVLDLSSNHLSSNHIDETTFIGLI--RLIILNLSNNELTRIDAKTF---K--DLVFLQRLDLRNNSIGYI  353 (1344)
Q Consensus       282 ~~~~~l~~-L~~L~Ls~n~l~~~~i~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~Ls~n~l~~i  353 (1344)
                      . +.++++ |+.|+|++|.++.  + +..+..+.  +|+.|++++|.+.+..+...   .  .+++|+.|+|++|.+..+
T Consensus       613 ~-l~~l~~~L~~L~Ls~N~L~~--l-p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l  688 (876)
T 4ecn_A          613 D-FCAFTDQVEGLGFSHNKLKY--I-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF  688 (876)
T ss_dssp             T-SCEECTTCCEEECCSSCCCS--C-CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred             H-HhhccccCCEEECcCCCCCc--C-chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence            4 356666 7777777776663  3 23344333  37777777776665433211   1  234677777777777766


Q ss_pred             chhhhcCCCCccEEEccCCcccccccccccCC-------CceeEEEccCCcCCCCChhhhc--CCCCCcEEEccCCCCCc
Q psy16377        354 EDNAFLSLYNLHTIYLSENRIHHITAHLFNGL-------YVLSKLTLSNNLLVNIDSKAFK--NCSALKELDLSSNAIVE  424 (1344)
Q Consensus       354 ~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l-------~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~  424 (1344)
                      +...+..+++|+.|+|++|.+..++...+...       ++|+.|+|++|.+..++ ..+.  .+++|+.|+|++|.+..
T Consensus       689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~  767 (876)
T 4ecn_A          689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSS  767 (876)
T ss_dssp             CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSS
T ss_pred             CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCc
Confidence            66666666777777777777665554444332       26677777777666543 3343  66677777777777666


Q ss_pred             cchhhcCCCCccEEEccC------CCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccccc
Q psy16377        425 IPSALSELPFLKTLDLGE------NQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI  498 (1344)
Q Consensus       425 lp~~l~~l~~L~~L~Ls~------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~  498 (1344)
                      +|..+..+++|+.|+|++      |.+.+..+..|..+++|+.|+|++|.++.+|...+   ++|+.|+|++|++..+..
T Consensus       768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEEC
T ss_pred             cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccCh
Confidence            666666667777776654      55555556666666666666666666666665422   466666666666666555


Q ss_pred             ccccCCCccceEeccccCCC
Q psy16377        499 GTFEKNKRLAAIRLDSNFLT  518 (1344)
Q Consensus       499 ~~~~~l~~L~~L~L~~n~l~  518 (1344)
                      ..|.....+..+.|.+|.+.
T Consensus       845 ~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          845 TSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             GGGHHHHHTTCCEEECCTTS
T ss_pred             HHccccccchheeecCCCcc
Confidence            54444334444444444433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-37  Score=395.84  Aligned_cols=445  Identities=18%  Similarity=0.261  Sum_probs=281.5

Q ss_pred             CCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccc------cCCCcCCCCCCCCEEEccCCCCCccChh
Q psy16377         71 YSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLD------LVPGSLDGLRELQVLNISSSNIKSISDD  144 (1344)
Q Consensus        71 ~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~------~~p~~~~~l~~L~~L~Ls~n~i~~i~~~  144 (1344)
                      .+++.|+|+++.+....+.+|++|++|++|+|++|++.. +.....      .+|...  +..|+ ++++++.+...++.
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~-~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~  156 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV-NERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRE  156 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGG-TCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCcccc-CCccccccccccCchHHH--HHHHH-hhHHHhhhccCchh
Confidence            478899999999974333689999999999998886532 111111      122222  34555 66666655544333


Q ss_pred             hhcC-CCCCCEEECC--------------------CCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCC
Q psy16377        145 VFCS-LANIQTLNLS--------------------RNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKL  203 (1344)
Q Consensus       145 ~~~~-l~~L~~L~Ls--------------------~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l  203 (1344)
                      .+.. +..+..+++.                    +|.+++++..                  ++++++|++|+|++|.+
T Consensus       157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~------------------l~~l~~L~~L~Ls~n~l  218 (636)
T 4eco_A          157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA------------------VMRLTKLRQFYMGNSPF  218 (636)
T ss_dssp             GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG------------------GGGCTTCCEEEEESCCC
T ss_pred             hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHH------------------HhcccCCCEEECcCCcc
Confidence            2221 1111111111                    2333333221                  34588999999999999


Q ss_pred             CC------------------CCCCccCC--CCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCC--CChhhh
Q psy16377        204 RT------------------LGDYSGIT--KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVS--LPEGLF  260 (1344)
Q Consensus       204 ~~------------------l~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~--l~~~~f  260 (1344)
                      ++                  +|.  .++  ++++|++|+|++|.+.+..|..|+++++|++|++++|. ++.  +|..+ 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-  295 (636)
T 4eco_A          219 VAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-  295 (636)
T ss_dssp             CGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-
T ss_pred             ccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-
Confidence            98                  776  477  89999999999999988888899999999999999997 775  55543 


Q ss_pred             cC------CCCCcEEEcccCcccccCh-hhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCcccccc
Q psy16377        261 SS------CRDISEIYAQKNSLVELSR-GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT  333 (1344)
Q Consensus       261 ~~------l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  333 (1344)
                      ..      +++|++|++++|.++.+|. ..|.++++|+.|++++|.+.+. ++  .+..+++|+.|++++|.+..+ +..
T Consensus       296 ~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip--~~~~l~~L~~L~L~~N~l~~l-p~~  371 (636)
T 4eco_A          296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP--AFGSEIKLASLNLAYNQITEI-PAN  371 (636)
T ss_dssp             HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC--CCEEEEEESEEECCSSEEEEC-CTT
T ss_pred             HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh--hhCCCCCCCEEECCCCccccc-cHh
Confidence            33      3788888888888887775 3567888888888888887742 32  677777888888888877744 344


Q ss_pred             ccCCCc-ccEEEecCCCccccchhhhcCC--CCccEEEccCCccccccccccc-------CCCceeEEEccCCcCCCCCh
Q psy16377        334 FKDLVF-LQRLDLRNNSIGYIEDNAFLSL--YNLHTIYLSENRIHHITAHLFN-------GLYVLSKLTLSNNLLVNIDS  403 (1344)
Q Consensus       334 ~~~l~~-L~~L~Ls~n~l~~i~~~~f~~l--~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~  403 (1344)
                      +..+++ |+.|++++|.+..++. .+..+  ++|+.|++++|.+.+..+..+.       .+++|+.|++++|.+..+.+
T Consensus       372 l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~  450 (636)
T 4eco_A          372 FCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK  450 (636)
T ss_dssp             SEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred             hhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence            677777 7888888777776654 34433  3677777777777776666555       55667777777777766666


Q ss_pred             hhhcCCCCCcEEEccCCCCCccchhhcC--------CCCccEEEccCCCCCccCcchh-cCCCCCcEEEcccCCCCCCCc
Q psy16377        404 KAFKNCSALKELDLSSNAIVEIPSALSE--------LPFLKTLDLGENQISKIENGSF-KNLQQLTDLRLVDNNIGNLSS  474 (1344)
Q Consensus       404 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~  474 (1344)
                      ..+..+++|+.|+|++|.+..+|..+..        +++|++|++++|.++.++...+ ..+++|+.|++++|.++.+|.
T Consensus       451 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~  530 (636)
T 4eco_A          451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT  530 (636)
T ss_dssp             HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred             HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence            6666666777777777766666543322        1256666666666664433222 255666666666666655544


Q ss_pred             ccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC-ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCcc
Q psy16377        475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT-DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLK  553 (1344)
Q Consensus       475 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~  553 (1344)
                      . +..+++|+.|++++|+                  ++++|.+. .+|..+..+++|+.|+|++|++..++.. +.++|+
T Consensus       531 ~-~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~L~  590 (636)
T 4eco_A          531 Q-PLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK-ITPNIS  590 (636)
T ss_dssp             G-GGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC-CCTTCC
T ss_pred             h-hhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcCCccCHh-HhCcCC
Confidence            3 4455666666664322                  11233332 3455555566666666666666555433 335666


Q ss_pred             EEEcCCCcCCCC
Q psy16377        554 WLDIHGNYISSL  565 (1344)
Q Consensus       554 ~L~Ls~n~l~~l  565 (1344)
                      .|+|++|.+..+
T Consensus       591 ~L~Ls~N~l~~~  602 (636)
T 4eco_A          591 VLDIKDNPNISI  602 (636)
T ss_dssp             EEECCSCTTCEE
T ss_pred             EEECcCCCCccc
Confidence            666666655543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.1e-36  Score=389.36  Aligned_cols=450  Identities=18%  Similarity=0.184  Sum_probs=334.8

Q ss_pred             cccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEc-cCCCCCCcChhh----------------------------
Q psy16377        185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHL-ENNEISQIAPNA----------------------------  235 (1344)
Q Consensus       185 ~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~L-s~n~i~~~~~~~----------------------------  235 (1344)
                      +.|..-.+++.|+|+++.+.+..+. .++++++|+.|+| ++|.+.+..+..                            
T Consensus       317 V~C~~~~~V~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~  395 (876)
T 4ecn_A          317 VDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYD  395 (876)
T ss_dssp             EEECTTSCEEEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCC
T ss_pred             eEecCCCCEEEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccC
Confidence            4454457899999999999864444 7999999999999 777654431111                            


Q ss_pred             ------------h-----------cCCCCccEEEee--CCCCCCCChhhhcCCCCCcEEEcccCcccc------------
Q psy16377        236 ------------F-----------VALSSLRILNIS--SNHLVSLPEGLFSSCRDISEIYAQKNSLVE------------  278 (1344)
Q Consensus       236 ------------~-----------~~l~~L~~L~Ls--~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~------------  278 (1344)
                                  +           .....++.+.+.  +|.++++|.. |.++++|+.|+|++|.+..            
T Consensus       396 ~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~  474 (876)
T 4ecn_A          396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANS  474 (876)
T ss_dssp             GGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred             cchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCccccccccccc
Confidence                        0           011122333332  2566667764 6889999999999999998            


Q ss_pred             ------cChhh-hcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCC-CCc-cccccccC-------CCcccE
Q psy16377        279 ------LSRGL-FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE-LTR-IDAKTFKD-------LVFLQR  342 (1344)
Q Consensus       279 ------l~~~~-~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~-------l~~L~~  342 (1344)
                            +|..+ |.++++|+.|+|++|.+.+  ..+..|.++++|+.|+|++|. +++ ..|..+..       +++|+.
T Consensus       475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~  552 (876)
T 4ecn_A          475 DYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI  552 (876)
T ss_dssp             HHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCE
T ss_pred             ccccccCChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccE
Confidence                  77665 4499999999999999877  346789999999999999998 887 44554444       459999


Q ss_pred             EEecCCCccccch-hhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCC-CcEEEccCC
Q psy16377        343 LDLRNNSIGYIED-NAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSA-LKELDLSSN  420 (1344)
Q Consensus       343 L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n  420 (1344)
                      |+|++|.+..++. ..|..+++|+.|+|++|.+..++  .|..+++|+.|+|++|.+..+ |..+..+++ |+.|+|++|
T Consensus       553 L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             EECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECCSS
T ss_pred             EEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECcCC
Confidence            9999999997776 47899999999999999999544  789999999999999999954 566888888 999999999


Q ss_pred             CCCccchhhcCCCC--ccEEEccCCCCCccCcch---hc--CCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377        421 AIVEIPSALSELPF--LKTLDLGENQISKIENGS---FK--NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI  493 (1344)
Q Consensus       421 ~l~~lp~~l~~l~~--L~~L~Ls~n~i~~~~~~~---~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i  493 (1344)
                      .+..+|..+..++.  |+.|++++|.+.+..+..   +.  .+++|+.|++++|.++.++...+..+++|+.|+|++|++
T Consensus       630 ~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L  709 (876)
T 4ecn_A          630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM  709 (876)
T ss_dssp             CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred             CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence            99999988877654  999999999998765422   22  345899999999999999998888999999999999999


Q ss_pred             cccccccccCC-------CccceEeccccCCCChhhHhh--cCCCCcEEEcCCCCCccccCCC-cCCCccEEEcCCCcCC
Q psy16377        494 HQIEIGTFEKN-------KRLAAIRLDSNFLTDINGVFT--YLAQLLWLNLSENHLVWFDYAM-VPGNLKWLDIHGNYIS  563 (1344)
Q Consensus       494 ~~~~~~~~~~l-------~~L~~L~L~~n~l~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~~~-lp~~L~~L~Ls~n~l~  563 (1344)
                      ..++...+...       ++|+.|+|++|.++.+|..+.  .+++|+.|+|++|++..++... -.++|+.|+|++|.  
T Consensus       710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~--  787 (876)
T 4ecn_A          710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR--  787 (876)
T ss_dssp             SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB--
T ss_pred             CccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC--
Confidence            98877665543       389999999999999998886  8999999999999887532110 01234444444322  


Q ss_pred             CCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccc
Q psy16377        564 SLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTAL  641 (1344)
Q Consensus       564 ~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l  641 (1344)
                                       ++++|++.+..+..+.  .+|+.|+|++|++ +.+|..+.  ++|+.|||++|++..++...+
T Consensus       788 -----------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          788 -----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             -----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             -----------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence                             1123556555554443  4677888888877 44455444  588888888888887776554


Q ss_pred             cccCCCCCCCCCeEEcCCCcccc--cccC
Q psy16377        642 RLKPVPQNKTLPEFYLGGNPFDC--DCSM  668 (1344)
Q Consensus       642 ~~~~~~~~~~l~~l~l~~Np~~C--~c~~  668 (1344)
                      ....     ....+.+.+|+..+  +|+.
T Consensus       848 ~~~~-----~~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          848 CPYI-----EAGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             HHHH-----HTTCCEEECCTTSEEESCGG
T ss_pred             cccc-----cchheeecCCCccccCCCCC
Confidence            2111     12234555565544  6653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.3e-34  Score=351.51  Aligned_cols=393  Identities=23%  Similarity=0.331  Sum_probs=282.9

Q ss_pred             CCCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeC
Q psy16377          1 MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN   80 (1344)
Q Consensus         1 ~~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~   80 (1344)
                      +..|+.+|.|.+       +.+.|..+.+..+| . +   + .++++|+|++|.+    ..+++..|+++++|++|+|++
T Consensus         1 a~p~~~~c~~~~-------~~~~c~~~~l~~lp-~-l---~-~~l~~L~Ls~n~i----~~~~~~~~~~l~~L~~L~L~~   63 (455)
T 3v47_A            1 ADPGTSECSVIG-------YNAICINRGLHQVP-E-L---P-AHVNYVDLSLNSI----AELNETSFSRLQDLQFLKVEQ   63 (455)
T ss_dssp             ------CCEEET-------TEEECCSSCCSSCC-C-C---C-TTCCEEECCSSCC----CEECTTTTSSCTTCCEEECCC
T ss_pred             CCCccceeEEEc-------cccCcCCCCcccCC-C-C---C-CccCEEEecCCcc----CcCChhHhccCccccEEECcC
Confidence            357899999852       25889999999988 2 2   3 6799999999988    346667899999999999999


Q ss_pred             CcCC-ccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccC--hhhhcCCCCCCEEEC
Q psy16377         81 CKLV-ELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSIS--DDVFCSLANIQTLNL  157 (1344)
Q Consensus        81 ~~i~-~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L  157 (1344)
                      |.+. .+++..|+++++|++|+|++|.+.       ...|..|.++++|++|+|++|.++...  ...|..+++|++|+|
T Consensus        64 n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L  136 (455)
T 3v47_A           64 QTPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL  136 (455)
T ss_dssp             CSTTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEEC
T ss_pred             CcccceECcccccccccCCEEeCCCCccC-------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEEC
Confidence            9886 677778888888888888766543       345777888888888888888887632  234777788888888


Q ss_pred             CCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCC--CCCCEEEccCCCCCCcChhh
Q psy16377        158 SRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF--RRLQNLHLENNEISQIAPNA  235 (1344)
Q Consensus       158 s~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l--~~L~~L~Ls~n~i~~~~~~~  235 (1344)
                      ++|.+..+....+                +.++++|++|++++|.++.+.+. .+..+  .+|+.|++++|.+.+..+..
T Consensus       137 ~~n~l~~~~~~~~----------------~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~  199 (455)
T 3v47_A          137 RDNNIKKIQPASF----------------FLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYW  199 (455)
T ss_dssp             CSSBCCSCCCCGG----------------GGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred             CCCccCccCcccc----------------cCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhh
Confidence            8877776644332                12367777777777777666554 44444  56667777776666554332


Q ss_pred             h--------cCCCCccEEEeeCCCCCCCChhhhcC---CCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCC
Q psy16377        236 F--------VALSSLRILNISSNHLVSLPEGLFSS---CRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH  304 (1344)
Q Consensus       236 ~--------~~l~~L~~L~Ls~n~l~~l~~~~f~~---l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~  304 (1344)
                      +        ..+++|++|++++|.+....+..|..   .++|+.|++++|.......              ..+.+..  
T Consensus       200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~--  263 (455)
T 3v47_A          200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKD--  263 (455)
T ss_dssp             TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCC--
T ss_pred             ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhcc--
Confidence            2        23455666666666555433222221   1445555554443322110              0111111  


Q ss_pred             CCcccccC--CCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccc
Q psy16377        305 IDETTFIG--LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLF  382 (1344)
Q Consensus       305 i~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~  382 (1344)
                      .....+.+  .++|+.|++++|.+..+.+..|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..|
T Consensus       264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  343 (455)
T 3v47_A          264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF  343 (455)
T ss_dssp             CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred             CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence            11222222  3689999999999999888889999999999999999999888889999999999999999999988889


Q ss_pred             cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch-hhcCCCCccEEEccCCCCCccCc
Q psy16377        383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKIEN  450 (1344)
Q Consensus       383 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~i~~~~~  450 (1344)
                      .++++|+.|++++|.+.++.+..|..+++|++|++++|.++.+|. .+..+++|++|++++|++....+
T Consensus       344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            999999999999999999988999999999999999999998875 46889999999999999887544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-34  Score=350.54  Aligned_cols=408  Identities=23%  Similarity=0.264  Sum_probs=239.1

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc-------------cEEEeeCCCCCCCC
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL-------------RILNISSNHLVSLP  256 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~l~  256 (1344)
                      .++|++|++++|.+..+|.  .++++++|++|++++|.+.+..|..++++.+|             ++|++++|.++++|
T Consensus        10 ~~~L~~L~l~~n~l~~iP~--~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPV--EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             cccchhhhcccCchhhCCh--hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            5789999999999988887  59999999999999999998889999998875             88888888888877


Q ss_pred             hhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccC
Q psy16377        257 EGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKD  336 (1344)
Q Consensus       257 ~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  336 (1344)
                      ..    .++|++|++++|.++.+|.    .+++|+.|++++|.+++  ++.  +  .++|++|++++|.+++++  .|..
T Consensus        88 ~~----~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~--l~~--~--~~~L~~L~L~~n~l~~lp--~~~~  151 (454)
T 1jl5_A           88 EL----PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA--LSD--L--PPLLEYLGVSNNQLEKLP--ELQN  151 (454)
T ss_dssp             SC----CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC--CCS--C--CTTCCEEECCSSCCSSCC--CCTT
T ss_pred             CC----cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCc--ccC--C--CCCCCEEECcCCCCCCCc--ccCC
Confidence            62    4678888888888887764    24788888888888765  221  1  157888888888888754  4778


Q ss_pred             CCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEE
Q psy16377        337 LVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD  416 (1344)
Q Consensus       337 l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  416 (1344)
                      +++|+.|++++|.+..++.    ..++|+.|++++|.+.+++  .+.++++|+.|++++|.+.++..    ..++|+.|+
T Consensus       152 l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~  221 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIV  221 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEE
T ss_pred             CCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEEE
Confidence            8888888888888877654    2357888888888877754  46777888888888887776532    125788888


Q ss_pred             ccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        417 LSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       417 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      +++|.+..+|. +..+++|++|++++|++.+++.    .+++|+.|++++|.++.++..    +++|+.|++++|+++++
T Consensus       222 l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          222 AGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             CCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEE
T ss_pred             CcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcc
Confidence            88888777774 7777888888888887776543    236778888888877766642    36777788877777665


Q ss_pred             ccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCc
Q psy16377        497 EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS  576 (1344)
Q Consensus       497 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~  576 (1344)
                      ..  +  .++|+.|++++|.+++++..   .++|+.|++++|++..++.  .+++|+.|++++|.++.++.     .+++
T Consensus       293 ~~--~--~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp~-----~l~~  358 (454)
T 1jl5_A          293 SE--L--PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-----LPQN  358 (454)
T ss_dssp             SC--C--CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-----CCTT
T ss_pred             cC--c--CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc--cCCcCCEEECCCCccccccc-----hhhh
Confidence            32  1  25677777777777665421   2467777777777765432  24567777777777776654     2456


Q ss_pred             ccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377        577 IKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY  656 (1344)
Q Consensus       577 L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~  656 (1344)
                      |+.|++++|++++++  .+|.++..|.  .|.+.+..|..   +++|+.|++++|++++++.       +|  .++..+.
T Consensus       359 L~~L~L~~N~l~~l~--~ip~~l~~L~--~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~-------iP--~sl~~L~  422 (454)
T 1jl5_A          359 LKQLHVEYNPLREFP--DIPESVEDLR--MNSHLAEVPEL---PQNLKQLHVETNPLREFPD-------IP--ESVEDLR  422 (454)
T ss_dssp             CCEEECCSSCCSSCC--CCCTTCCEEE--CCC------------------------------------------------
T ss_pred             ccEEECCCCCCCcCC--CChHHHHhhh--hcccccccccc---cCcCCEEECCCCcCCcccc-------ch--hhHhhee
Confidence            777777777776643  2344555443  34444444432   4789999999999986421       12  2456667


Q ss_pred             cCCCcccc
Q psy16377        657 LGGNPFDC  664 (1344)
Q Consensus       657 l~~Np~~C  664 (1344)
                      +++|.+.|
T Consensus       423 ~~~~~~~~  430 (454)
T 1jl5_A          423 MNSERVVD  430 (454)
T ss_dssp             --------
T ss_pred             CcCcccCC
Confidence            77766544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.6e-34  Score=347.19  Aligned_cols=349  Identities=21%  Similarity=0.274  Sum_probs=195.4

Q ss_pred             CCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCC-------------CCEEEccCC
Q psy16377         70 IYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRE-------------LQVLNISSS  136 (1344)
Q Consensus        70 l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~-------------L~~L~Ls~n  136 (1344)
                      .++|++|++++|+++.+| ..|+++++|++|++++|.+.       ..+|..++++++             |++|++++|
T Consensus        10 ~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~-------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWE-------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHH-------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             cccchhhhcccCchhhCC-hhHhcccchhhhhccCCccc-------ccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            356666666666666665 34666666666666544432       235556666554             577888888


Q ss_pred             CCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCC
Q psy16377        137 NIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFR  216 (1344)
Q Consensus       137 ~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~  216 (1344)
                      .++++|.    -.++|++|++++|.+++++..                     .++|++|++++|++++++..     .+
T Consensus        82 ~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---------------------~~~L~~L~l~~n~l~~l~~~-----~~  131 (454)
T 1jl5_A           82 GLSSLPE----LPPHLESLVASCNSLTELPEL---------------------PQSLKSLLVDNNNLKALSDL-----PP  131 (454)
T ss_dssp             CCSCCCS----CCTTCSEEECCSSCCSSCCCC---------------------CTTCCEEECCSSCCSCCCSC-----CT
T ss_pred             ccccCCC----CcCCCCEEEccCCcCCccccc---------------------cCCCcEEECCCCccCcccCC-----CC
Confidence            7777765    136778888888777765431                     35777888888877766542     15


Q ss_pred             CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEcc
Q psy16377        217 RLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLS  296 (1344)
Q Consensus       217 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls  296 (1344)
                      +|++|++++|.++++ | .|+++++|++|++++|.++.+|..    ..+|++|++++|.+..++.  |.++++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCCC-c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCcc--ccCCCCCCEEECC
Confidence            777888887777764 4 477777788888877777776643    2467777777777777652  5677777777777


Q ss_pred             CCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccc
Q psy16377        297 SNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHH  376 (1344)
Q Consensus       297 ~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~  376 (1344)
                      +|.+++  ++.    ...+|+.|++++|.+..++  .+..+++|+.|++++|.+..++.    .+++|+.|++++|.+.+
T Consensus       204 ~N~l~~--l~~----~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          204 NNSLKK--LPD----LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             SSCCSS--CCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC
T ss_pred             CCcCCc--CCC----CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc
Confidence            777664  221    1246667777777666543  26666666777776666665543    23566666666666655


Q ss_pred             cccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCC
Q psy16377        377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL  456 (1344)
Q Consensus       377 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  456 (1344)
                      ++.    ..++|+.|++++|.+.++..    -.++|+.|++++|.+..++..   .++|++|++++|++++++.    .+
T Consensus       272 l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~----~~  336 (454)
T 1jl5_A          272 LPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPA----LP  336 (454)
T ss_dssp             CCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCC----CC
T ss_pred             cCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCccccccc----cC
Confidence            332    12456666666665554321    114555666666655544321   1355555555555555332    13


Q ss_pred             CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377        457 QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       457 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                      ++|+.|++++|.++.++.    .+++|++|++++|++++
T Consensus       337 ~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          337 PRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             CcCCEEECCCCccccccc----hhhhccEEECCCCCCCc
Confidence            455555555555555543    24555555555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-31  Score=327.38  Aligned_cols=280  Identities=28%  Similarity=0.411  Sum_probs=125.0

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +++|++|++++|.++.+++   +.++++|++|++++|.+.++.+  +.++++|++|++++|.+..++.  +..+++|++|
T Consensus        89 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  161 (466)
T 1o6v_A           89 LTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQL  161 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGG--GTTCTTCSEE
T ss_pred             cccCCEEECCCCccccChh---hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChh--hccCCcccEe
Confidence            3444444444444443332   3444444444444444444321  4444444444444444444332  3444444444


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++. +.+..+++  +.++++|+.|++++|.+..    ...+..+++|+.|++++|.+.++.+  +..+++|+.|++++|.
T Consensus       162 ~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~----~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  232 (466)
T 1o6v_A          162 SFG-NQVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ  232 (466)
T ss_dssp             EEE-ESCCCCGG--GTTCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             ecC-CcccCchh--hccCCCCCEEECcCCcCCC----ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC
Confidence            443 22222222  3445555555555555443    1224444455555555554444433  3444455555555555


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL  429 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l  429 (1344)
                      +..++  .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.++.+  +..+++|+.|++++|.+..++. +
T Consensus       233 l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~  305 (466)
T 1o6v_A          233 LKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-I  305 (466)
T ss_dssp             CCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-G
T ss_pred             cccch--hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-h
Confidence            44432  24444555555555555444433  3444444444444444444332  4444444555554444444433 3


Q ss_pred             cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      ..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++.++  .+..+++|+.|++++|++++.
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCcc
Confidence            444444444444444444332  334444444444444443332  234444444444444444333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-31  Score=328.27  Aligned_cols=347  Identities=26%  Similarity=0.387  Sum_probs=206.7

Q ss_pred             CCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcC
Q psy16377         69 NIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCS  148 (1344)
Q Consensus        69 ~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~  148 (1344)
                      .+++|+.|++.++.+..++.  +..+++|++|+|++|.+..        ++. +.++++|++|++++|.+..+++  +.+
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~--------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~  110 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTD--------ITP-LKNLTKLVDILMNNNQIADITP--LAN  110 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCC--------CGG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred             HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCC--------chh-hhccccCCEEECCCCccccChh--hcC
Confidence            35677888888887777763  6777777777776555432        233 6777777777777777777665  677


Q ss_pred             CCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCC
Q psy16377        149 LANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI  228 (1344)
Q Consensus       149 l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i  228 (1344)
                      +++|++|++++|.+++++.                   +.++++|++|++++|.++.++   .+..+++|+.|+++ +.+
T Consensus       111 l~~L~~L~L~~n~l~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~  167 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDP-------------------LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQV  167 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-------------------GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESC
T ss_pred             CCCCCEEECCCCCCCCChH-------------------HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-Ccc
Confidence            7777777777777666543                   123667777777777766654   36667777777775 344


Q ss_pred             CCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcc
Q psy16377        229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDET  308 (1344)
Q Consensus       229 ~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~  308 (1344)
                      .+..  .+.++++|++|++++|.+..++.  +..+++|++|++++|.+..+++  ++.+++|+.|++++|.+..    ..
T Consensus       168 ~~~~--~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~~  237 (466)
T 1o6v_A          168 TDLK--PLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD----IG  237 (466)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CG
T ss_pred             cCch--hhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc----ch
Confidence            4432  26667777777777776666532  4556666666666666655544  3556666666666665543    12


Q ss_pred             cccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCce
Q psy16377        309 TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVL  388 (1344)
Q Consensus       309 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  388 (1344)
                      .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..++                        +  +..+++|
T Consensus       238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~------------------------~--~~~l~~L  289 (466)
T 1o6v_A          238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS------------------------P--LAGLTAL  289 (466)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG------------------------G--GTTCTTC
T ss_pred             hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc------------------------c--ccCCCcc
Confidence            34455555555555555544433  444444555555444444433                        3  3444455


Q ss_pred             eEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCC
Q psy16377        389 SKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN  468 (1344)
Q Consensus       389 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  468 (1344)
                      +.|++++|.+.++.+  +..+++|+.|++++|.+..++. +..+++|++|++++|.++++  ..+..+++|+.|++++|.
T Consensus       290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence            555555555444432  4455555555555555554433 45556666666666665554  245556666666666666


Q ss_pred             CCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        469 IGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       469 l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      +..+.+  +..+++|+.|++++|+++..
T Consensus       365 l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          365 ISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             cCccch--hhcCCCCCEEeccCCcccCC
Confidence            655443  55666666666666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-32  Score=334.96  Aligned_cols=331  Identities=23%  Similarity=0.362  Sum_probs=204.1

Q ss_pred             CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377          2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC   81 (1344)
Q Consensus         2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~   81 (1344)
                      ..||..|.|...     ++.|.|..+.+..+| ..+   + ..++.|+|++|.+    ..+++..|.++++|++|+|++|
T Consensus         1 ~~Cp~~C~C~~~-----~~~v~c~~~~l~~ip-~~~---~-~~l~~L~L~~n~l----~~~~~~~~~~l~~L~~L~L~~n   66 (477)
T 2id5_A            1 TGCPPRCECSAQ-----DRAVLCHRKRFVAVP-EGI---P-TETRLLDLGKNRI----KTLNQDEFASFPHLEELELNEN   66 (477)
T ss_dssp             CCCSTTCEEETT-----TTEEECCSCCCSSCC-SCC---C-TTCSEEECCSSCC----CEECTTTTTTCTTCCEEECTTS
T ss_pred             CcccCCCeECCC-----CCEEEeCCCCcCcCC-CCC---C-CCCcEEECCCCcc----ceECHhHccCCCCCCEEECCCC
Confidence            369999999531     237999999999998 433   2 5688999999988    3466678888999999999988


Q ss_pred             cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC
Q psy16377         82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS  161 (1344)
Q Consensus        82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~  161 (1344)
                      .+..+++.+|+++++|++|+|++|.+.       .+.+..|.++++|++|+|++|.+..+++..|..+++|++|++++|.
T Consensus        67 ~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~  139 (477)
T 2id5_A           67 IVSAVEPGAFNNLFNLRTLGLRSNRLK-------LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND  139 (477)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCC-------SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT
T ss_pred             ccCEeChhhhhCCccCCEEECCCCcCC-------ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc
Confidence            888887777888888888888765543       2334456777788888888877777776667777777777777776


Q ss_pred             CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377        162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS  241 (1344)
Q Consensus       162 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  241 (1344)
                      +..+....|                 .++++|+.|+|++|.++.++.. .+.++++|+.|+|++|.+.++.+..|..+++
T Consensus       140 l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  201 (477)
T 2id5_A          140 LVYISHRAF-----------------SGLNSLEQLTLEKCNLTSIPTE-ALSHLHGLIVLRLRHLNINAIRDYSFKRLYR  201 (477)
T ss_dssp             CCEECTTSS-----------------TTCTTCCEEEEESCCCSSCCHH-HHTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred             cceeChhhc-----------------cCCCCCCEEECCCCcCcccChh-HhcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence            665543332                 2355666666666666665543 4556666666666666666665555666666


Q ss_pred             ccEEEeeCCCCC-CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377        242 LRILNISSNHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN  320 (1344)
Q Consensus       242 L~~L~Ls~n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~  320 (1344)
                      |++|++++|... .++...+. ..+|++|++++|.++.++...|..+++|+.|+|++|.+++  +....|.++++|+.|+
T Consensus       202 L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~  278 (477)
T 2id5_A          202 LKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQ  278 (477)
T ss_dssp             CCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--ECTTSCTTCTTCCEEE
T ss_pred             cceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--cChhhccccccCCEEE
Confidence            666666665432 34433332 2255555555555555555555555555555555555543  3333444445555555


Q ss_pred             ccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377        321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI  374 (1344)
Q Consensus       321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  374 (1344)
                      |++|.+..+.+..|..+++|+.|+|++|.++.++...|..+++|+.|++++|++
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            555554444444444444444444444444444444444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.98  E-value=4.6e-31  Score=325.61  Aligned_cols=321  Identities=25%  Similarity=0.342  Sum_probs=271.3

Q ss_pred             ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377        193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ  272 (1344)
Q Consensus       193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  272 (1344)
                      -+.++.++++++.+|..  +  .++|+.|+|++|.++++.+..|.++++|++|+|++|.+..+++..|.++++|++|+|+
T Consensus        13 ~~~v~c~~~~l~~ip~~--~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEG--I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TTEEECCSCCCSSCCSC--C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCC--C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence            45788888888888863  3  3688999999999999888889999999999999999998888888999999999999


Q ss_pred             cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccc
Q psy16377        273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGY  352 (1344)
Q Consensus       273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  352 (1344)
                      +|.+..++...|.++++|++|+|++|.+..  +....|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+..
T Consensus        89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLSNLTKLDISENKIVI--LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             SSCCCSCCTTSSTTCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CCcCCccCcccccCCCCCCEEECCCCcccc--CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            999999988888889999999999998876  556678888999999999999888888888889999999999999988


Q ss_pred             cchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc-hhhcC
Q psy16377        353 IEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP-SALSE  431 (1344)
Q Consensus       353 i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~  431 (1344)
                      ++...|..+++|+.|++++|.+.++.+..|..+++|+.|++++|...+..+.......+|+.|++++|.++.+| ..+..
T Consensus       167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence            88888888999999999999888888888888888888888887765544444444558888888888888887 46788


Q ss_pred             CCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEe
Q psy16377        432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIR  511 (1344)
Q Consensus       432 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  511 (1344)
                      +++|+.|+|++|.+.++.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|++++|+++.+....|..+++|+.|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  326 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI  326 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence            88888888888888888888888888888888888888887777788888888888888888888887888888888888


Q ss_pred             ccccCCCC
Q psy16377        512 LDSNFLTD  519 (1344)
Q Consensus       512 L~~n~l~~  519 (1344)
                      +++|.+..
T Consensus       327 l~~N~l~c  334 (477)
T 2id5_A          327 LDSNPLAC  334 (477)
T ss_dssp             CCSSCEEC
T ss_pred             ccCCCccC
Confidence            88887763

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=4.1e-30  Score=313.32  Aligned_cols=226  Identities=23%  Similarity=0.240  Sum_probs=143.4

Q ss_pred             CCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCc
Q psy16377        188 SGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS  267 (1344)
Q Consensus       188 ~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~  267 (1344)
                      +.+++|++|++++|.+++++   .+..+++|++|++++|.++++ +  ++.+++|++|++++|.++.++   |..+++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~  109 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT---GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTPLTKLT  109 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT---TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred             hHcCCCCEEEccCCCcccCh---hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence            34677888888888887765   367778888888888887776 2  777778888888888777764   56777777


Q ss_pred             EEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecC
Q psy16377        268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRN  347 (1344)
Q Consensus       268 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  347 (1344)
                      +|++++|.++.++   +..+++|+.|++++|.+++  +   .+..+++|+.|++++|...+..  .+..+++|+.|++++
T Consensus       110 ~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~  179 (457)
T 3bz5_A          110 YLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE--I---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF  179 (457)
T ss_dssp             EEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC--C---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred             EEECCCCcCCeec---CCCCCcCCEEECCCCccce--e---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence            7777777777764   5677777777777777765  2   2556667777777776432222  255566666666666


Q ss_pred             CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377        348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS  427 (1344)
Q Consensus       348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~  427 (1344)
                      |.++.++   +..+++|+.|++++|.+++.   .+..+++|+.|++++|.+.+++   +..+++|+.|++++|.++.+| 
T Consensus       180 n~l~~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~-  249 (457)
T 3bz5_A          180 NKITELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD-  249 (457)
T ss_dssp             SCCCCCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-
T ss_pred             Cccceec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC-
Confidence            6666554   45556666666666665554   1445555555555555555542   444555555555555555443 


Q ss_pred             hhcCCCCccEEEccCC
Q psy16377        428 ALSELPFLKTLDLGEN  443 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n  443 (1344)
                       +..+++|+.|++++|
T Consensus       250 -~~~l~~L~~L~l~~n  264 (457)
T 3bz5_A          250 -VSTLSKLTTLHCIQT  264 (457)
T ss_dssp             -CTTCTTCCEEECTTC
T ss_pred             -HHHCCCCCEEeccCC
Confidence             334455555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=3.6e-30  Score=313.89  Aligned_cols=357  Identities=22%  Similarity=0.273  Sum_probs=189.5

Q ss_pred             cCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCC
Q psy16377        121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSH  200 (1344)
Q Consensus       121 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~  200 (1344)
                      .++++++|++|++++|.++.++  .+..+++|++|++++|.+++++                    ++.+++|++|++++
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--------------------~~~l~~L~~L~Ls~   94 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--------------------LSQNTNLTYLACDS   94 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--------------------CTTCTTCSEEECCS
T ss_pred             ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--------------------cccCCCCCEEECcC
Confidence            4566777777777777777765  3667777777777777766542                    12356677777777


Q ss_pred             CCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccC-ccccc
Q psy16377        201 NKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN-SLVEL  279 (1344)
Q Consensus       201 n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~l  279 (1344)
                      |.+++++    ++++++|++|++++|.++++ +  ++.+++|++|++++|.++.++   +..+++|++|++++| .+..+
T Consensus        95 N~l~~~~----~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A           95 NKLTNLD----VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             SCCSCCC----CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC
T ss_pred             CCCceee----cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc
Confidence            7766652    55666777777777766664 2  666666666666666666653   345555666666555 23333


Q ss_pred             ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc
Q psy16377        280 SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL  359 (1344)
Q Consensus       280 ~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~  359 (1344)
                      +   +..+++|+.|++++|.+++  ++   +..+++|+.|++++|.++++                        +   +.
T Consensus       165 ~---~~~l~~L~~L~ls~n~l~~--l~---l~~l~~L~~L~l~~N~l~~~------------------------~---l~  209 (457)
T 3bz5_A          165 D---VTPQTQLTTLDCSFNKITE--LD---VSQNKLLNRLNCDTNNITKL------------------------D---LN  209 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCCC--CC---CTTCTTCCEEECCSSCCSCC------------------------C---CT
T ss_pred             c---cccCCcCCEEECCCCccce--ec---cccCCCCCEEECcCCcCCee------------------------c---cc
Confidence            1   3445555555555555544  21   44445555555555554443                        1   34


Q ss_pred             CCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEE
Q psy16377        360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLD  439 (1344)
Q Consensus       360 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  439 (1344)
                      .+++|+.|++++|++.+++   +..+++|+.|++++|.+.++.   +..+++|+.|++++|.             |+.|+
T Consensus       210 ~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~-------------L~~L~  270 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD-------------LLEID  270 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC-------------CSCCC
T ss_pred             cCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC-------------CCEEE
Confidence            4445555555555554432   344455555555555555443   2334555555554432             33444


Q ss_pred             ccCCCCCccCcchhcCCCCCcEEEcccCCC-CCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCC
Q psy16377        440 LGENQISKIENGSFKNLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT  518 (1344)
Q Consensus       440 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  518 (1344)
                      +++|.+.+..+  +..+++|+.|++++|.. +.++.    ..++|+.|++++|             ++|+.|++++|.++
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~  331 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQN-------------PKLVYLYLNNTELT  331 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTTC-------------TTCCEEECTTCCCS
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceecc----CCCcceEechhhc-------------ccCCEEECCCCccc
Confidence            55554333322  23445555555555543 22221    1233333333322             44555555555555


Q ss_pred             ChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCc
Q psy16377        519 DINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS  598 (1344)
Q Consensus       519 ~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~s  598 (1344)
                      +++  +..+++|+.|++++|+++.+                               +.|..|++++|.+.+..   -...
T Consensus       332 ~l~--l~~l~~L~~L~l~~N~l~~l-------------------------------~~L~~L~l~~n~l~g~~---~~~~  375 (457)
T 3bz5_A          332 ELD--VSHNTKLKSLSCVNAHIQDF-------------------------------SSVGKIPALNNNFEAEG---QTIT  375 (457)
T ss_dssp             CCC--CTTCTTCSEEECCSSCCCBC-------------------------------TTGGGSSGGGTSEEEEE---EEEE
T ss_pred             ccc--cccCCcCcEEECCCCCCCCc-------------------------------cccccccccCCcEEecc---eeee
Confidence            542  45555555555555555421                               12333445555555431   1124


Q ss_pred             ccEEEcCCCcCCccCCCCCC
Q psy16377        599 VEVLFINNNLIKSVKPHTFF  618 (1344)
Q Consensus       599 L~~L~Ls~N~i~~~~~~~f~  618 (1344)
                      |+.+++++|+++|.+|..+.
T Consensus       376 l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          376 MPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CCCBCCBTTBEEEECCTTCB
T ss_pred             cCccccccCcEEEEcChhHh
Confidence            55667777777766665443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.3e-29  Score=300.39  Aligned_cols=311  Identities=24%  Similarity=0.316  Sum_probs=189.4

Q ss_pred             CCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCC
Q psy16377        125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR  204 (1344)
Q Consensus       125 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~  204 (1344)
                      +++|++|++++|.++.+|...|..+++|++|++++|.+++++...|                 .++++|++|+|++|.++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----------------~~l~~L~~L~L~~n~l~  106 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-----------------AYAHTIQKLYMGFNAIR  106 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-----------------TTCTTCCEEECCSSCCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-----------------cCCCCcCEEECCCCCCC
Confidence            4677778888887777777777777777777777777665544333                 23566666666666666


Q ss_pred             CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhh
Q psy16377        205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF  284 (1344)
Q Consensus       205 ~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~  284 (1344)
                      .+++. .+.++++|++|+|++|.+..+.+..|.++++|++|++++|.+..+++..|..+++|++|++++|.++.++   +
T Consensus       107 ~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~  182 (390)
T 3o6n_A          107 YLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---L  182 (390)
T ss_dssp             CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---G
T ss_pred             cCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---c
Confidence            66554 5566666666666666666554444566666666666666666665555566666666666666555554   2


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc
Q psy16377        285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL  364 (1344)
Q Consensus       285 ~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L  364 (1344)
                      ..+++|+.|++++|.++.       +....+|+.|++++|.+..                        ++..   ..++|
T Consensus       183 ~~l~~L~~L~l~~n~l~~-------~~~~~~L~~L~l~~n~l~~------------------------~~~~---~~~~L  228 (390)
T 3o6n_A          183 SLIPSLFHANVSYNLLST-------LAIPIAVEELDASHNSINV------------------------VRGP---VNVEL  228 (390)
T ss_dssp             GGCTTCSEEECCSSCCSE-------EECCSSCSEEECCSSCCCE------------------------EECC---CCSSC
T ss_pred             ccccccceeecccccccc-------cCCCCcceEEECCCCeeee------------------------cccc---ccccc
Confidence            345555666665555432       1122344444444444443                        3321   12445


Q ss_pred             cEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377        365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ  444 (1344)
Q Consensus       365 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  444 (1344)
                      +.|++++|.+.+.  ..+..+++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|..+..+++|++|++++|+
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence            5555555555443  23455556666666666666555556666666666666666666666666666777777777777


Q ss_pred             CCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCccc
Q psy16377        445 ISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       445 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      +..++. .+..+++|+.|++++|.+..++   +..+++|+.|++++|++...
T Consensus       307 l~~~~~-~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          307 LLHVER-NQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCCCGG-GHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred             ceecCc-cccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence            665533 3556677777777777776664   45667777778877776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-28  Score=290.48  Aligned_cols=304  Identities=25%  Similarity=0.397  Sum_probs=189.2

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +++|+.|+++++.+..++   .+..+++|++|++++|.++++.+  +.++++|++|++++|.++.++  .|..+++|++|
T Consensus        43 l~~L~~L~l~~~~i~~~~---~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L  115 (347)
T 4fmz_A           43 LESITKLVVAGEKVASIQ---GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLREL  115 (347)
T ss_dssp             HTTCSEEECCSSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred             cccccEEEEeCCccccch---hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCEE
Confidence            567777788777777665   36667777777777777776633  777777777777777777664  36677777777


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++++|.+..+++  +..+++|+.|++++|....   ....+..+++|+.|++++|.+..+.+  +..+++|+.|++++|.
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLS---DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC---CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCcc---cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            777777766655  5667777777777664332   12335555666666666665554433  4455555555555555


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL  429 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l  429 (1344)
                      +..++.  +                        ..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+..++. +
T Consensus       189 l~~~~~--~------------------------~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~  239 (347)
T 4fmz_A          189 IEDISP--L------------------------ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-L  239 (347)
T ss_dssp             CCCCGG--G------------------------GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             cccccc--c------------------------cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-h
Confidence            544433  3                        444445555555554444432  4455556666666666555544 5


Q ss_pred             cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccce
Q psy16377        430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA  509 (1344)
Q Consensus       430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  509 (1344)
                      ..+++|++|++++|.++++  ..+..+++|+.|++++|.++.++  .+..+++|+.|++++|++....+..|..+++|+.
T Consensus       240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            5566666666666666554  24556666666666666665553  2566677777777777776666666666777777


Q ss_pred             EeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377        510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       510 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      |++++|.+++++. +..+++|+.|++++|.++
T Consensus       316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          316 LFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             EEccCCccccccC-hhhhhccceeehhhhccc
Confidence            7777777776655 667777777777777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=3.7e-29  Score=300.04  Aligned_cols=308  Identities=24%  Similarity=0.327  Sum_probs=216.2

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      .+++.|++++|.++.+|.. .+..+++|++|+|++|.+.++.+..|.++++|++|++++|.+..+++..|.++++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChh-HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            4445555555555544443 344455555555555555555444555555555555555555555555455555555555


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +++|.+..++...|.++++|++|++++|.+.+  +....+..+++|+.|++++|.++.+.   +..+++|+.|++++|.+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCc--cChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence            55555555555545555555555555555544  33444555566666666666555542   34456777777777776


Q ss_pred             cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCcc-chhh
Q psy16377        351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI-PSAL  429 (1344)
Q Consensus       351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l  429 (1344)
                      ..+.     ..++|+.|++++|.+......   ..++|+.|++++|.+.+.  ..+..+++|++|++++|.+..+ |..+
T Consensus       199 ~~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 STLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SEEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            6543     346899999999999887543   347899999999999886  4788999999999999999965 7789


Q ss_pred             cCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccce
Q psy16377        430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA  509 (1344)
Q Consensus       430 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~  509 (1344)
                      ..+++|++|++++|+++++.. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.+.   +..+++|+.
T Consensus       269 ~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~  343 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLK---LSTHHTLKN  343 (390)
T ss_dssp             TTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred             cccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCcc-ccccCcCCEEECCCCccceeC---chhhccCCE
Confidence            999999999999999998743 557789999999999999988765 677899999999999998875   667789999


Q ss_pred             EeccccCCCC
Q psy16377        510 IRLDSNFLTD  519 (1344)
Q Consensus       510 L~L~~n~l~~  519 (1344)
                      |++++|.+..
T Consensus       344 L~l~~N~~~~  353 (390)
T 3o6n_A          344 LTLSHNDWDC  353 (390)
T ss_dssp             EECCSSCEEH
T ss_pred             EEcCCCCccc
Confidence            9999999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=2e-28  Score=288.68  Aligned_cols=305  Identities=22%  Similarity=0.352  Sum_probs=224.2

Q ss_pred             CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377        213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV  292 (1344)
Q Consensus       213 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  292 (1344)
                      ..+++|+.|+++++.+..+ + .+..+++|++|++++|.++.++.  |..+++|++|++++|.+..++  .|..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCE
Confidence            4456666666666666554 2 35556666666666666655544  455555555555555554443  1344455555


Q ss_pred             EEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCC
Q psy16377        293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN  372 (1344)
Q Consensus       293 L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n  372 (1344)
                      |++++|                          .+..+.+  +..+++|+.|++++|....... .+..+++|+.|++++|
T Consensus       115 L~l~~n--------------------------~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A          115 LYLNED--------------------------NISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES  165 (347)
T ss_dssp             EECTTS--------------------------CCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred             EECcCC--------------------------cccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence            555544                          4444433  4555566666666663322222 2667777777777777


Q ss_pred             cccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcch
Q psy16377        373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS  452 (1344)
Q Consensus       373 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~  452 (1344)
                      .+.+..+  +..+++|+.|++++|.+.++.+  +..+++|+.|++++|.+..++. +..+++|++|++++|.+++..+  
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--  238 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--  238 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--
Confidence            7766655  6778888889999888887754  8889999999999999998866 8899999999999999998765  


Q ss_pred             hcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCCCCc
Q psy16377        453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLAQLL  531 (1344)
Q Consensus       453 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~  531 (1344)
                      +..+++|+.|++++|.++.++  .+..+++|+.|++++|+++.+  ..+..+++|+.|++++|.++.. +..+..+++|+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  314 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT  314 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred             hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence            889999999999999998874  488999999999999999987  3688899999999999999865 47789999999


Q ss_pred             EEEcCCCCCccccCCCcCCCccEEEcCCCcCC
Q psy16377        532 WLNLSENHLVWFDYAMVPGNLKWLDIHGNYIS  563 (1344)
Q Consensus       532 ~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~  563 (1344)
                      .|++++|+++..+...-.++|+.|++++|.|+
T Consensus       315 ~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          315 TLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             EEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             EEEccCCccccccChhhhhccceeehhhhccc
Confidence            99999999987755444478999999999886

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.5e-28  Score=309.10  Aligned_cols=310  Identities=25%  Similarity=0.327  Sum_probs=200.8

Q ss_pred             CCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCC
Q psy16377        125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR  204 (1344)
Q Consensus       125 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~  204 (1344)
                      +.+++.|++++|.+..+|+..|..+++|++|+|++|.+++++...|                 .++++|++|+|++|.++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------------~~l~~L~~L~L~~n~l~  112 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-----------------AYAHTIQKLYMGFNAIR  112 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-----------------TTCTTCCEEECCSSCCC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHh-----------------cCCCCCCEEECCCCcCC
Confidence            4677778888877777777777777777777777777765544333                 23566666666666666


Q ss_pred             CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhh
Q psy16377        205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF  284 (1344)
Q Consensus       205 ~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~  284 (1344)
                      .+++. .|+++++|++|+|++|.++++.+..|+++++|++|+|++|.+..+++..|..+++|+.|++++|.+..++.   
T Consensus       113 ~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---  188 (597)
T 3oja_B          113 YLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---  188 (597)
T ss_dssp             CCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---
T ss_pred             CCCHH-HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---
Confidence            66554 55666666666666666666655555666666666666666666666555666666666666666555542   


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc
Q psy16377        285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL  364 (1344)
Q Consensus       285 ~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L  364 (1344)
                      ..+++|+.|++++|.+.+       +....+|                        +.|++++|.+..++...   .++|
T Consensus       189 ~~l~~L~~L~l~~n~l~~-------l~~~~~L------------------------~~L~ls~n~l~~~~~~~---~~~L  234 (597)
T 3oja_B          189 SLIPSLFHANVSYNLLST-------LAIPIAV------------------------EELDASHNSINVVRGPV---NVEL  234 (597)
T ss_dssp             GGCTTCSEEECCSSCCSE-------EECCTTC------------------------SEEECCSSCCCEEECSC---CSCC
T ss_pred             hhhhhhhhhhcccCcccc-------ccCCchh------------------------heeeccCCccccccccc---CCCC
Confidence            344555666665554432       1222344                        44444444444433321   2456


Q ss_pred             cEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377        365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ  444 (1344)
Q Consensus       365 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  444 (1344)
                      +.|++++|.+.+.  ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.
T Consensus       235 ~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          235 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC
Confidence            6666666665553  34556666777777777766666667777777777777777777777777777888888888887


Q ss_pred             CCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377        445 ISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       445 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                      +..++ ..+..+++|+.|+|++|.+..++   +..+++|+.|++++|++..
T Consensus       313 l~~i~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          313 LLHVE-RNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             CCCCG-GGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCccC-cccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence            77653 34667788888888888887665   5677889999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=6e-28  Score=305.66  Aligned_cols=311  Identities=24%  Similarity=0.320  Sum_probs=187.6

Q ss_pred             CCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEE
Q psy16377        215 FRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD  294 (1344)
Q Consensus       215 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  294 (1344)
                      +.+++.|++++|.+..+.+..|.++++|++|+|++|.+..+++..|..+++|++|+|++|.+..+++..|+++++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34555555555555555554555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377        295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI  374 (1344)
Q Consensus       295 Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  374 (1344)
                      |++|.++.  ++...|.++++|+.|+|++|.+.++.+..|..+++|+.|++++                        |.+
T Consensus       130 L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~------------------------N~l  183 (597)
T 3oja_B          130 LERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS------------------------NRL  183 (597)
T ss_dssp             CCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT------------------------SCC
T ss_pred             eeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC------------------------CCC
Confidence            55555543  3333344445555555555554444444444444444444444                        444


Q ss_pred             cccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhc
Q psy16377        375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK  454 (1344)
Q Consensus       375 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  454 (1344)
                      .+..   +..+++|+.|++++|.+.++     ....+|+.|++++|.+..++..+  .++|+.|+|++|.+++.  ..+.
T Consensus       184 ~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~  251 (597)
T 3oja_B          184 THVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLL  251 (597)
T ss_dssp             SBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGG
T ss_pred             CCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhc
Confidence            4432   23334455555555544332     22345667777777666555433  25677777777777664  4566


Q ss_pred             CCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEE
Q psy16377        455 NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLN  534 (1344)
Q Consensus       455 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  534 (1344)
                      .+++|+.|+|++|.+..+.+..|..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY  330 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEE
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEE
Confidence            77777777777777766655667777777788887777777633 34557788888888888888887778888888888


Q ss_pred             cCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccc
Q psy16377        535 LSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEI  590 (1344)
Q Consensus       535 Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~  590 (1344)
                      |++|.+..++                          +..+++|+.|++++|.+.+.
T Consensus       331 L~~N~l~~~~--------------------------~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          331 LDHNSIVTLK--------------------------LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CCSSCCCCCC--------------------------CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCCCCcC--------------------------hhhcCCCCEEEeeCCCCCCh
Confidence            8888775432                          22345788888888888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=2.1e-27  Score=277.84  Aligned_cols=290  Identities=24%  Similarity=0.387  Sum_probs=230.4

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      ..+++.++++++.++.+|..  +  .++|+.|+|++|.++++.+..|.++++|++|+|++|.+..+++..|..+++|++|
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~--~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKD--L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCS--C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCccccCcc--C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            34799999999999988864  3  3689999999999999988889999999999999999999988888999999999


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc--cccccccCCCcccEEEecC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLVFLQRLDLRN  347 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~  347 (1344)
                      ++++|.++.++...+   ++|++|++++|.+.+  +....|.++++|+.|++++|.+..  ..+..|..+++|+.|++++
T Consensus       106 ~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~  180 (330)
T 1xku_A          106 YLSKNQLKELPEKMP---KTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD  180 (330)
T ss_dssp             ECCSSCCSBCCSSCC---TTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred             ECCCCcCCccChhhc---ccccEEECCCCcccc--cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence            999999998887653   789999999999886  666778889999999999998864  5667788889999999999


Q ss_pred             CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377        348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS  427 (1344)
Q Consensus       348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~  427 (1344)
                      |.+..++...+   ++|+.|++++|.+.+..+..|.++++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|.
T Consensus       181 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          181 TNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             SCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             CccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            99888776432   788999999999888888888888889999999988888877788888889999999888888888


Q ss_pred             hhcCCCCccEEEccCCCCCccCcchhcCC------CCCcEEEcccCCCC--CCCcccccCCCCccEEEcCCC
Q psy16377        428 ALSELPFLKTLDLGENQISKIENGSFKNL------QQLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKN  491 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n  491 (1344)
                      .+..+++|++|++++|.++++....|...      ..|+.|++++|.+.  .+++..|..+.+|+.+++++|
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            88888888888888888888777666432      33444444444442  133333444444444444433

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.7e-27  Score=290.09  Aligned_cols=294  Identities=21%  Similarity=0.251  Sum_probs=230.8

Q ss_pred             CcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCC
Q psy16377        530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNN  607 (1344)
Q Consensus       530 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N  607 (1344)
                      ...++.+++.++.++. .+|.+++.|+|++|+++.++. ..+..+++|+.|++++|.+.++.+..+.  .+|++|+|++|
T Consensus        45 ~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           45 FSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             SCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4456666666665553 455677777777777776653 2356677888888888888887765554  57888888888


Q ss_pred             cCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccC
Q psy16377        608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP  687 (1344)
Q Consensus       608 ~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~  687 (1344)
                      ++..+.+..|..+++|+.|+|++|.|+.+....+.     .                                       
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-----~---------------------------------------  158 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN-----R---------------------------------------  158 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT-----T---------------------------------------
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhh-----h---------------------------------------
Confidence            88888877888888888888888877654321110     0                                       


Q ss_pred             ccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCC
Q psy16377        688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ  767 (1344)
Q Consensus       688 ~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~  767 (1344)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (440)
T 3zyj_A          159 --------------------------------------------------------------------------------  158 (440)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCccEEEEeC-CcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc
Q psy16377        768 ISTVPPRIPMDATHVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD  846 (1344)
Q Consensus       768 l~~~p~~ip~~l~~L~L~~-n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~  846 (1344)
                              ...++.|+|++ |.+..++...|.++++|+.|+|++|+++.++  .+..+++|+.|+|++|+|+.+.+..|.
T Consensus       159 --------l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~  228 (440)
T 3zyj_A          159 --------IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQ  228 (440)
T ss_dssp             --------CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTT
T ss_pred             --------CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhc
Confidence                    02356677776 5677788888999999999999999999886  488999999999999999999999999


Q ss_pred             CccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhc
Q psy16377        847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN  926 (1344)
Q Consensus       847 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~  926 (1344)
                      ++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|..+++|+.|+|++|||.|||+ +.||..|+++.
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~-l~~l~~~~~~~  307 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD-ILWLSWWIKDM  307 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST-THHHHHHHHTT
T ss_pred             cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC-chHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 79999999765


Q ss_pred             CCccCCCCCeeecCCCCCCCcc-ccccCCcccccCc
Q psy16377        927 SNKVKDGLDISCVIDESSPPIR-KEIDLNSTTCTEY  961 (1344)
Q Consensus       927 ~~~v~~~~~~~C~~~~~~~~~~-~~~~~~~~~C~~~  961 (1344)
                      .. ......++|..|....+.. ..++.....|..+
T Consensus       308 ~~-~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~~P  342 (440)
T 3zyj_A          308 AP-SNTACCARCNTPPNLKGRYIGELDQNYFTCYAP  342 (440)
T ss_dssp             SC-SSCSCCCBEEESTTTTTCBCC----CCSCCCCC
T ss_pred             cc-cCCccccCCCChhHhcCccHhHhhhhhccCCCC
Confidence            32 2334568999987654321 1122333468654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.5e-27  Score=279.23  Aligned_cols=288  Identities=23%  Similarity=0.361  Sum_probs=228.3

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      .+++.++++++.++.+|..  +  .++|+.|++++|.+.++.+..|.++++|++|++++|.++.+++..|.++++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~~--~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKE--I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCSC--C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCCC--C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            4789999999999998874  3  37899999999999999888999999999999999999999888889999999999


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc--cccccccCCCcccEEEecCC
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLVFLQRLDLRNN  348 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n  348 (1344)
                      +++|.+..++...+   ++|++|++++|.+..  +....|..+++|+.|++++|.++.  ..+..|..+ +|+.|++++|
T Consensus       109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRK--VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             CCSSCCCSCCSSCC---TTCCEEECCSSCCCC--CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             CCCCcCCccCcccc---ccCCEEECCCCccCc--cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            99999998887654   789999999999886  666778889999999999998864  566677777 8899999999


Q ss_pred             CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377        349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA  428 (1344)
Q Consensus       349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~  428 (1344)
                      .+..++...+   ++|+.|++++|.+.+..+..|.++++|+.|++++|.+.++.+..|..+++|+.|++++|.+..+|..
T Consensus       183 ~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          183 KLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             BCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            8888776432   6788888888888888877788888888888888888888877888888888888888888888888


Q ss_pred             hcCCCCccEEEccCCCCCccCcchhcCC------CCCcEEEcccCCCC--CCCcccccCCCCccEEEcCCC
Q psy16377        429 LSELPFLKTLDLGENQISKIENGSFKNL------QQLTDLRLVDNNIG--NLSSGMLYELPSLEVLNLSKN  491 (1344)
Q Consensus       429 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l------~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~n  491 (1344)
                      +..+++|++|++++|.++++....|...      ..|+.|++.+|.+.  .+++..|..+++|+.|++++|
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            8888888888888888887776666542      33445555554443  334444444444444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.6e-27  Score=287.44  Aligned_cols=293  Identities=19%  Similarity=0.246  Sum_probs=228.3

Q ss_pred             CcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCC
Q psy16377        530 LLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNN  607 (1344)
Q Consensus       530 L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N  607 (1344)
                      ...++.++..++.++ ..+|++++.|+|++|.|+.++. ..+..+++|+.|++++|+++++.+..+.  .+|++|+|++|
T Consensus        56 ~~~v~c~~~~l~~iP-~~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP-QGIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SCEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEECCCCcCccC-CCCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            345666666666555 3456677777777777776643 2355677888888888888877665544  57888888888


Q ss_pred             cCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccC
Q psy16377        608 LIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYP  687 (1344)
Q Consensus       608 ~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~  687 (1344)
                      ++..+.+..|.++++|++|+|++|.|+.++...+.     .                                       
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-----~---------------------------------------  169 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-----R---------------------------------------  169 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT-----T---------------------------------------
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHh-----c---------------------------------------
Confidence            88887777788888888888888877654321110     0                                       


Q ss_pred             ccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCCCC
Q psy16377        688 KIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ  767 (1344)
Q Consensus       688 ~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~  767 (1344)
                                                                                                      
T Consensus       170 --------------------------------------------------------------------------------  169 (452)
T 3zyi_A          170 --------------------------------------------------------------------------------  169 (452)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCccEEEEeC-CcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc
Q psy16377        768 ISTVPPRIPMDATHVYLDG-NTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD  846 (1344)
Q Consensus       768 l~~~p~~ip~~l~~L~L~~-n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~  846 (1344)
                              ...++.|++++ |.+..++...|.++++|+.|+|++|+++.++  .+..+++|+.|+|++|+++.+.+..|.
T Consensus       170 --------l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~  239 (452)
T 3zyi_A          170 --------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFH  239 (452)
T ss_dssp             --------CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGT
T ss_pred             --------CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCccccc
Confidence                    02356677776 6677888888999999999999999999885  588999999999999999999999999


Q ss_pred             CccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhc
Q psy16377        847 NLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN  926 (1344)
Q Consensus       847 ~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~  926 (1344)
                      ++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..+..+++|+.|+|++|||.|||+ +.||..|+++.
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~-~~~l~~~l~~~  318 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD-ILWLAWWLREY  318 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT-THHHHHHHHHH
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC-chHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 79999999875


Q ss_pred             CCccCCCCCeeecCCCCCCCccccccCC--cccccCc
Q psy16377        927 SNKVKDGLDISCVIDESSPPIRKEIDLN--STTCTEY  961 (1344)
Q Consensus       927 ~~~v~~~~~~~C~~~~~~~~~~~~~~~~--~~~C~~~  961 (1344)
                      ... .....++|..|....+. ....++  ...|..+
T Consensus       319 ~~~-~~~~~~~C~~P~~l~g~-~l~~~~~~~~~C~~P  353 (452)
T 3zyi_A          319 IPT-NSTCCGRCHAPMHMRGR-YLVEVDQASFQCSAP  353 (452)
T ss_dssp             C----CCSSCBEEESTTTTTC-BTTSCCGGGCCCCCC
T ss_pred             Ccc-CCccCcEeCCchHhccc-hhhccchhhhcccCc
Confidence            322 23356899998765432 222332  3467654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.6e-26  Score=270.27  Aligned_cols=290  Identities=25%  Similarity=0.376  Sum_probs=251.0

Q ss_pred             CCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCC
Q psy16377        151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ  230 (1344)
Q Consensus       151 ~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~  230 (1344)
                      +|+.++++++.++.++...                    .++|+.|++++|+++.++.. .|.++++|++|+|++|.+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--------------------~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~   90 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--------------------PPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISK   90 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--------------------CTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCC
T ss_pred             CCeEEEecCCCccccCccC--------------------CCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCe
Confidence            5777788777777665421                    36789999999999999876 79999999999999999999


Q ss_pred             cChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccc
Q psy16377        231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF  310 (1344)
Q Consensus       231 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~  310 (1344)
                      +.|..|+++++|++|++++|.++.+|...+   ++|++|++++|.+..+++..|.++++|+.|++++|.+....+....+
T Consensus        91 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  167 (330)
T 1xku_A           91 ISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF  167 (330)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGG
T ss_pred             eCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhc
Confidence            989999999999999999999999988765   78999999999999999999999999999999999986433456778


Q ss_pred             cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377        311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK  390 (1344)
Q Consensus       311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  390 (1344)
                      .++++|+.|++++|.++.++...+   ++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       168 ~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  244 (330)
T 1xku_A          168 QGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  244 (330)
T ss_dssp             GGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence            999999999999999998765433   78999999999999998888999999999999999999998888999999999


Q ss_pred             EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh-hc------CCCCccEEEccCCCCCc--cCcchhcCCCCCcE
Q psy16377        391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA-LS------ELPFLKTLDLGENQISK--IENGSFKNLQQLTD  461 (1344)
Q Consensus       391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~------~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~  461 (1344)
                      |++++|.+..+ +..+..+++|+.|++++|.++.++.. |.      ..+.|+.|++++|.+..  +.+..|..+.+|+.
T Consensus       245 L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          245 LHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             EECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             EECCCCcCccC-ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            99999999966 45688899999999999999988643 32      24789999999999864  67788999999999


Q ss_pred             EEcccCC
Q psy16377        462 LRLVDNN  468 (1344)
Q Consensus       462 L~L~~n~  468 (1344)
                      +++++|+
T Consensus       324 l~L~~N~  330 (330)
T 1xku_A          324 VQLGNYK  330 (330)
T ss_dssp             EEC----
T ss_pred             EEecccC
Confidence            9999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=3.8e-27  Score=275.86  Aligned_cols=289  Identities=25%  Similarity=0.366  Sum_probs=236.8

Q ss_pred             CCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCC
Q psy16377        151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ  230 (1344)
Q Consensus       151 ~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~  230 (1344)
                      +|+.++++++.++.++...                    .++|+.|++++|.++.+++. .|.++++|++|+|++|.+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--------------------~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~   92 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--------------------SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISK   92 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--------------------CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCE
T ss_pred             cCCEEECCCCCccccCCCC--------------------CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCc
Confidence            5778888887777665421                    35788888888888887765 68888999999999999988


Q ss_pred             cChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccc
Q psy16377        231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF  310 (1344)
Q Consensus       231 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~  310 (1344)
                      +.|.+|+++++|++|++++|.+..+|...+   ++|++|++++|.+..+++..|.++++|+.|++++|.++...+....+
T Consensus        93 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  169 (332)
T 2ft3_A           93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF  169 (332)
T ss_dssp             ECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred             cCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence            888888999999999999998888887665   78999999999999888888888999999999999886422445666


Q ss_pred             cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377        311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK  390 (1344)
Q Consensus       311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  390 (1344)
                      ..+ +|+.|++++|.++.++...+   ++|+.|++++|.+..++...|..+++|+.|++++|.+.+..+..+..+++|+.
T Consensus       170 ~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  245 (332)
T 2ft3_A          170 DGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE  245 (332)
T ss_dssp             CSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred             cCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence            776 89999999999888765433   68899999999999888778889999999999999999988888889999999


Q ss_pred             EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch-hhcC------CCCccEEEccCCCCC--ccCcchhcCCCCCcE
Q psy16377        391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSE------LPFLKTLDLGENQIS--KIENGSFKNLQQLTD  461 (1344)
Q Consensus       391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~------l~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~  461 (1344)
                      |++++|.+..+ |..+..+++|+.|++++|.++.++. .+..      .+.|+.|++++|.+.  ++.+..|..+++|+.
T Consensus       246 L~L~~N~l~~l-p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          246 LHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA  324 (332)
T ss_dssp             EECCSSCCCBC-CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred             EECCCCcCeec-ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence            99999999866 4558889999999999999997764 3332      467999999999987  678888999999999


Q ss_pred             EEcccCC
Q psy16377        462 LRLVDNN  468 (1344)
Q Consensus       462 L~L~~n~  468 (1344)
                      |++++|+
T Consensus       325 l~l~~n~  331 (332)
T 2ft3_A          325 IQFGNYK  331 (332)
T ss_dssp             EEC----
T ss_pred             hhccccc
Confidence            9998874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.3e-27  Score=277.97  Aligned_cols=145  Identities=22%  Similarity=0.328  Sum_probs=107.2

Q ss_pred             cCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCccccc---Cccccceeecccccccc-----ccCc
Q psy16377        796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFD---NLEKLSELYLQENRIEY-----IANG  867 (1344)
Q Consensus       796 ~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~---~l~~L~~L~L~~N~l~~-----i~~~  867 (1344)
                      .|.++++|+.|++++|+++.+....+..+++|+.|+|++|+++.+....+.   ....++.++|++|.|+.     ++ .
T Consensus       193 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~-~  271 (353)
T 2z80_A          193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM-K  271 (353)
T ss_dssp             TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH-H
T ss_pred             HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH-H
Confidence            344455566666666666666555555666777777777777665544332   24556666666665554     43 4


Q ss_pred             cccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCC
Q psy16377        868 TFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES  943 (1344)
Q Consensus       868 ~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~  943 (1344)
                      .|..+++|++|+|++|+|+.++.+.|..+++|++|++++|||.|+|+.+.|+..|+++....+  ...+.|..|+.
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~p~~  345 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSGK  345 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE--ESCCBBTTTCC
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC--CCCcccCCCCC
Confidence            678899999999999999999999888999999999999999999988899999998877666  45789988754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=8.2e-27  Score=269.74  Aligned_cols=279  Identities=18%  Similarity=0.241  Sum_probs=220.4

Q ss_pred             cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccc----ccccCcccEEEcCC
Q psy16377        531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE----LSIPNSVEVLFINN  606 (1344)
Q Consensus       531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~----~~~~~sL~~L~Ls~  606 (1344)
                      +.++++++.++.++. .+|++++.|++++|.++.++. ..+..+++|+.|++++|+++....    ..-..+|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            356666666666554 455677777777777776664 124566788888888888775421    11125677777777


Q ss_pred             CcCCccCCCCCCCCCCccEEEecCCCCccccc-ccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccc
Q psy16377        607 NLIKSVKPHTFFDKSNLARVDIYANDITKLDL-TALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQ  685 (1344)
Q Consensus       607 N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~-~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~  685 (1344)
                      |.+..+ +..|.++++|++|++++|.++.+.. ..+                                            
T Consensus        88 n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------------------  122 (306)
T 2z66_A           88 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVF--------------------------------------------  122 (306)
T ss_dssp             CSEEEE-EEEEETCTTCCEEECTTSEEESSTTTTTT--------------------------------------------
T ss_pred             CccccC-hhhcCCCCCCCEEECCCCcccccccchhh--------------------------------------------
Confidence            777654 3346677777777777776654321 000                                            


Q ss_pred             cCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccccccccCCCCCCCCeeeccCCCCccEEEcCC
Q psy16377        686 YPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSE  765 (1344)
Q Consensus       686 ~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~  765 (1344)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (306)
T 2z66_A          123 --------------------------------------------------------------------------------  122 (306)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc-cccchhcCCCccceeecccccccccCccc
Q psy16377        766 QQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV-ILNQTFNGLSSLQVLHLENNLITHFYGYE  844 (1344)
Q Consensus       766 ~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~-i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  844 (1344)
                         ..     ...++.|++++|.+..+....|.++++|+.|++++|.+.. +.+..|..+++|++|+|++|+++.+.+..
T Consensus       123 ---~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  194 (306)
T 2z66_A          123 ---LS-----LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA  194 (306)
T ss_dssp             ---TT-----CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ---hh-----ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence               00     0246788888899888888889999999999999999987 67889999999999999999999999999


Q ss_pred             ccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCC-CCCcEEEecCCcccCCChhhHHHHHHH
Q psy16377        845 FDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTN-SMLRKVYLGNNPFSCSCATLQELQTWI  923 (1344)
Q Consensus       845 f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~-~~L~~L~l~~Np~~C~C~~l~~l~~w~  923 (1344)
                      |..+++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+.+..+..+ ++|++|+|++|||.|+|+ +.||.+|+
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~-~~~~~~~l  273 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE-HQSFLQWI  273 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG-GHHHHHHH
T ss_pred             hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC-hHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888888 599999999999999999 69999999


Q ss_pred             hhcCCccCCCCCeeecCCCCCC
Q psy16377        924 IDNSNKVKDGLDISCVIDESSP  945 (1344)
Q Consensus       924 ~~~~~~v~~~~~~~C~~~~~~~  945 (1344)
                      ++....+.+...++|..|....
T Consensus       274 ~~~~~~~~~~~~~~C~~p~~~~  295 (306)
T 2z66_A          274 KDQRQLLVEVERMECATPSDKQ  295 (306)
T ss_dssp             HHTGGGBSCGGGCBEEESGGGT
T ss_pred             HhhhhhhccccccccCCchhhC
Confidence            9887777788899999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.94  E-value=8.7e-27  Score=255.23  Aligned_cols=194  Identities=29%  Similarity=0.514  Sum_probs=181.6

Q ss_pred             CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377        742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF  821 (1344)
Q Consensus       742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f  821 (1344)
                      ..||..|.|.      ...++|++.+++.+|..+|..++.|++++|+|+.++...|.++++|+.|+|++|+|+.+.+.+|
T Consensus         3 ~~CP~~C~C~------~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~   76 (220)
T 2v9t_B            3 LHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF   76 (220)
T ss_dssp             CCSCTTSEEE------TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCEEC------CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh
Confidence            4699999996      2479999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcE
Q psy16377        822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRK  901 (1344)
Q Consensus       822 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~  901 (1344)
                      .++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  156 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT  156 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377        902 VYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP  945 (1344)
Q Consensus       902 L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~  945 (1344)
                      |+|++|||.|+|+ +.||..|+..+..   ....+.|..|....
T Consensus       157 L~L~~N~~~c~c~-l~~l~~~l~~~~~---~~~~~~C~~P~~l~  196 (220)
T 2v9t_B          157 MHLAQNPFICDCH-LKWLADYLHTNPI---ETSGARCTSPRRLA  196 (220)
T ss_dssp             EECCSSCEECSGG-GHHHHHHHHHCCC---BCSCCBEEESGGGT
T ss_pred             EEeCCCCcCCCCc-cHHHHHHHHhCCC---CccCCCcCCchHHc
Confidence            9999999999999 7999999987643   23668999886543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=1.6e-28  Score=301.47  Aligned_cols=352  Identities=19%  Similarity=0.180  Sum_probs=260.5

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCc----ChhhhcCCCCccEEEeeCCCCCCCC-hhhhcCCC
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI----APNAFVALSSLRILNISSNHLVSLP-EGLFSSCR  264 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~f~~l~  264 (1344)
                      .++|++|||++|+++..+....+..+++|++|+|++|.+.+.    .+..+..+++|++|+|++|.+.... ..++..++
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            467899999999987655432367789999999999998853    3567788899999999999887532 23344455


Q ss_pred             ----CCcEEEcccCcccccC----hhhhcCCCCCCEEEccCCCCCCCCCCccc-----ccCCCcccEEEccCCCCCccc-
Q psy16377        265 ----DISEIYAQKNSLVELS----RGLFHKLEQLLVLDLSSNHLSSNHIDETT-----FIGLIRLIILNLSNNELTRID-  330 (1344)
Q Consensus       265 ----~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~-----~~~l~~L~~L~Ls~n~l~~~~-  330 (1344)
                          +|++|++++|.++...    +..+..+++|++|++++|.+...  ....     +...++|+.|++++|.++... 
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~--~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH--HHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence                6999999999888532    55678899999999999987541  1111     223567999999999888754 


Q ss_pred             ---cccccCCCcccEEEecCCCccccchhhhc-----CCCCccEEEccCCccccc----ccccccCCCceeEEEccCCcC
Q psy16377        331 ---AKTFKDLVFLQRLDLRNNSIGYIEDNAFL-----SLYNLHTIYLSENRIHHI----TAHLFNGLYVLSKLTLSNNLL  398 (1344)
Q Consensus       331 ---~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l  398 (1344)
                         +..+..+++|+.|++++|.+.......+.     ..++|+.|++++|.+...    .+..+..+++|+.|++++|.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence               34556678999999999988654443332     366899999999988764    355566788899999999887


Q ss_pred             CCCC-----hhhhcCCCCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccCcchhcC-----CCCCcEEE
Q psy16377        399 VNID-----SKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIENGSFKN-----LQQLTDLR  463 (1344)
Q Consensus       399 ~~~~-----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~  463 (1344)
                      .+..     +..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.+.+.....+..     .++|+.|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            6543     2223357889999999998885     6777888889999999999887654444432     36888999


Q ss_pred             cccCCCCCCC----cccccCCCCccEEEcCCCcCcccccccccC-----CCccceEeccccCCC-----ChhhHhhcCCC
Q psy16377        464 LVDNNIGNLS----SGMLYELPSLEVLNLSKNKIHQIEIGTFEK-----NKRLAAIRLDSNFLT-----DINGVFTYLAQ  529 (1344)
Q Consensus       464 L~~n~l~~l~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~-----~l~~~~~~l~~  529 (1344)
                      +++|.++...    ...+..+++|++|++++|.+.......+..     +++|+.|++++|.++     .++..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            9988886542    223556788889999888887665443332     568888888888888     46777788888


Q ss_pred             CcEEEcCCCCCccc
Q psy16377        530 LLWLNLSENHLVWF  543 (1344)
Q Consensus       530 L~~L~Ls~n~l~~~  543 (1344)
                      |+.|++++|++...
T Consensus       400 L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          400 LRELDLSNNCLGDA  413 (461)
T ss_dssp             CCEEECCSSSCCHH
T ss_pred             ccEEECCCCCCCHH
Confidence            88888888887644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=1.5e-28  Score=301.78  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=60.0

Q ss_pred             cceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCccC----hhhhcCCCCCCEEEcccccCcccCCcccccCC
Q psy16377         44 LITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELP----VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVP  119 (1344)
Q Consensus        44 ~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~l~----~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p  119 (1344)
                      +++.|+++++.+..   .-....|..+++|++|+|++|.+....    +.++..+++|++|+|++|.+..   .....+.
T Consensus         4 ~l~~L~Ls~~~l~~---~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~   77 (461)
T 1z7x_W            4 DIQSLDIQCEELSD---ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVL   77 (461)
T ss_dssp             EEEEEEEESCCCCH---HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHH
T ss_pred             cceehhhhhcccCc---hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHH
Confidence            46777777776632   011123666777777777777766321    2445666677777776555421   0000111


Q ss_pred             CcCCCCC-CCCEEEccCCCCCccC----hhhhcCCCCCCEEECCCCCCC
Q psy16377        120 GSLDGLR-ELQVLNISSSNIKSIS----DDVFCSLANIQTLNLSRNSIR  163 (1344)
Q Consensus       120 ~~~~~l~-~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~Ls~n~l~  163 (1344)
                      ..+.... +|++|+|++|.++...    +..+..+++|++|++++|.+.
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence            1111111 5666666666665322    344556666666666666554

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=241.20  Aligned_cols=124  Identities=29%  Similarity=0.543  Sum_probs=112.7

Q ss_pred             hHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHHHHHhc
Q psy16377       1038 EEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEAS 1117 (1344)
Q Consensus      1038 ~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~s 1117 (1344)
                      +.||.+.+.+.||+ +.||++|+++||+.||..+.                                   ++|.++|++|
T Consensus        25 ~~fv~~ll~~~LE~-~~g~~l~~~~rD~~~G~~i~-----------------------------------~~i~~~I~~S   68 (159)
T 1t3g_A           25 ERFALEILPDMLEK-HYGYKLFIPDRDLIPTGTYI-----------------------------------EDVARCVDQS   68 (159)
T ss_dssp             HHHHHTHHHHHHHH-TSCCCEECHHHHCCCCTTHH-----------------------------------HHHHHHHHTB
T ss_pred             HHHHHHHHHHHHcC-CCCeEEEEEcccccCccchH-----------------------------------HHHHHHHHHc
Confidence            55666667778996 68899999999999999999                                   8999999999


Q ss_pred             ccEEEEecccch-hhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcc---cchhhHHHHhhhccEEEeCc-------hh
Q psy16377       1118 RRVILVLTKNFL-QTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEA---ESDIELKPYLKSCMKIRWGE-------KR 1186 (1344)
Q Consensus      1118 rr~i~vls~~f~-~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~---~~~~~l~~~l~~~~~l~w~~-------~~ 1186 (1344)
                      ||+|+|+|++|+ +|+||++|++.|++.+++++..+||+|+++++++.   ..+++|+++|+++|||+|++       ++
T Consensus        69 r~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~~~~~~~~~~L~~~l~~~t~l~W~~p~~~~~~~~  148 (159)
T 1t3g_A           69 KRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQEVEALKHTIKLLTVIKWHGPKCNKLNSK  148 (159)
T ss_dssp             SEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCSHHHHHHHHHHHHTCSSEEEEECCSGGGGSSSCH
T ss_pred             CEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccccccccchHHHHHHHhhCCeEeCCCCcccchHHH
Confidence            999999999998 99999999999999999999999999999999853   22468999999999999976       49


Q ss_pred             hHHHhHhhcCC
Q psy16377       1187 FWERLRYAMPT 1197 (1344)
Q Consensus      1187 Fw~~l~~~~p~ 1197 (1344)
                      ||+|||||||+
T Consensus       149 FW~~Lr~amP~  159 (159)
T 1t3g_A          149 FWKRLQYEMPF  159 (159)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHhCCC
Confidence            99999999995

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=2.2e-27  Score=245.78  Aligned_cols=140  Identities=23%  Similarity=0.366  Sum_probs=123.4

Q ss_pred             cCCCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeeccccc
Q psy16377       1022 TSSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQ 1101 (1344)
Q Consensus      1022 ~~~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~ 1101 (1344)
                      ...+.||.+..+.++|++||...|++.||+++.||++|+++||+.||..+.                             
T Consensus        31 ~~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~-----------------------------   81 (178)
T 2j67_A           31 KRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSIS-----------------------------   81 (178)
T ss_dssp             CCSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHH-----------------------------
T ss_pred             CCCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHH-----------------------------
Confidence            345677888888899999999999999998778999999999999999999                             


Q ss_pred             CCccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchh---hHHHHhhhcc
Q psy16377       1102 TEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDI---ELKPYLKSCM 1178 (1344)
Q Consensus      1102 ~~w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~---~l~~~l~~~~ 1178 (1344)
                            ++|.++|++|||+|+|+|++|++|+||++|++.|++.+++++..+||+|+++++++..+++   +||.+|+.+|
T Consensus        82 ------~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~~~~~Lr~~l~~~t  155 (178)
T 2j67_A           82 ------ENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKA  155 (178)
T ss_dssp             ------HHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCCCGGGSCTTCHHHHHHHHTTC
T ss_pred             ------HHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCChhHHHHHHHHhcCC
Confidence                  9999999999999999999999999999999999999999999999999999999888877   9999999999


Q ss_pred             EEEeCc-----hhhHHHhHhhcC
Q psy16377       1179 KIRWGE-----KRFWERLRYAMP 1196 (1344)
Q Consensus      1179 ~l~w~~-----~~Fw~~l~~~~p 1196 (1344)
                      ||+|++     ++||+||||||.
T Consensus       156 ~l~W~~~~~~~~~FW~~Lr~al~  178 (178)
T 2j67_A          156 YLEWPKDRRKCGLFWANLRAAIN  178 (178)
T ss_dssp             SEECCSSGGGHHHHHHHHHHHHC
T ss_pred             EEECCCCcchhHHHHHHHHHHhC
Confidence            999987     699999999984

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.93  E-value=1.7e-25  Score=255.86  Aligned_cols=222  Identities=20%  Similarity=0.327  Sum_probs=192.5

Q ss_pred             ccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCC
Q psy16377        571 IKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNK  650 (1344)
Q Consensus       571 l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~  650 (1344)
                      +.++++++++++++|.++.++. .++..++.|++++|.+.++.+..|.++++|+.|++++|.|+.+...       ..  
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~--   75 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GT--   75 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SC--
T ss_pred             ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CC--
Confidence            3446678999999999887764 4667899999999999999888999999999999999987753210       00  


Q ss_pred             CCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccc
Q psy16377        651 TLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALC  730 (1344)
Q Consensus       651 ~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c  730 (1344)
                                                                                                      
T Consensus        76 --------------------------------------------------------------------------------   75 (290)
T 1p9a_G           76 --------------------------------------------------------------------------------   75 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccC
Q psy16377        731 HCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNN  810 (1344)
Q Consensus       731 ~c~~~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~  810 (1344)
                                                                   ...++.|++++|.++.++. .|.++++|+.|++++
T Consensus        76 ---------------------------------------------l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           76 ---------------------------------------------LPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSF  109 (290)
T ss_dssp             ---------------------------------------------CTTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCS
T ss_pred             ---------------------------------------------CCcCCEEECCCCcCCcCch-hhccCCCCCEEECCC
Confidence                                                         0235678888888888775 578899999999999


Q ss_pred             CcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccc
Q psy16377        811 SQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA  890 (1344)
Q Consensus       811 n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  890 (1344)
                      |+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.++.
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCcc
Q psy16377        891 FDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKV  930 (1344)
Q Consensus       891 ~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v  930 (1344)
                      ..+ .+.+|+.|+|++|||.|+|+ +.||..|++++...+
T Consensus       190 ~~~-~~~~L~~l~L~~Np~~C~c~-~~~l~~wl~~~~~~~  227 (290)
T 1p9a_G          190 GFF-GSHLLPFAFLHGNPWLCNCE-ILYFRRWLQDNAENV  227 (290)
T ss_dssp             TTT-TTCCCSEEECCSCCBCCSGG-GHHHHHHHHHTGGGB
T ss_pred             hhc-ccccCCeEEeCCCCccCcCc-cHHHHHHHHhCcccc
Confidence            866 56789999999999999998 689999998876544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=245.63  Aligned_cols=193  Identities=27%  Similarity=0.477  Sum_probs=177.7

Q ss_pred             CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccC-CCcCCCCCCccEEEccCCcccccccch
Q psy16377        742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIP-NHVFIGRKNMLSLYVNNSQIEVILNQT  820 (1344)
Q Consensus       742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~-~~~f~~l~~L~~L~l~~n~i~~i~~~~  820 (1344)
                      ..||..|+|..      ..++|+++.++.+|..+|..++.|+|++|+++.++ ..+|.++++|+.|+|++|+|+.+.+.+
T Consensus         3 ~~CP~~C~C~~------~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~   76 (220)
T 2v70_A            3 LACPEKCRCEG------TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA   76 (220)
T ss_dssp             -CCCTTCEEET------TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCEECC------CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH
Confidence            57999999963      37999999999999999999999999999999994 577999999999999999999999999


Q ss_pred             hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377        821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR  900 (1344)
Q Consensus       821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~  900 (1344)
                      |.++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  156 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS  156 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred             hCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCC
Q psy16377        901 KVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESS  944 (1344)
Q Consensus       901 ~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~  944 (1344)
                      .|+|++|||.|+|+ +.||..|++....   ......|..|...
T Consensus       157 ~L~L~~N~l~c~c~-l~~l~~~~~~~~~---~~~~~~C~~P~~l  196 (220)
T 2v70_A          157 TLNLLANPFNCNCY-LAWLGEWLRKKRI---VTGNPRCQKPYFL  196 (220)
T ss_dssp             EEECCSCCEECSGG-GHHHHHHHHHSCC---BCCCCEEEESGGG
T ss_pred             EEEecCcCCcCCCc-hHHHHHHHHhcCc---cccCCccCCChHH
Confidence            99999999999999 7999999976533   2356789888643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=269.59  Aligned_cols=260  Identities=25%  Similarity=0.383  Sum_probs=223.5

Q ss_pred             CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377          2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC   81 (1344)
Q Consensus         2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~   81 (1344)
                      ..||..|.|...     +..|.|..+.+..+| ..+.    .+++.|+|++|.+    ..+++..|.++++|++|+|++|
T Consensus        33 ~~Cp~~C~C~~~-----~~~v~c~~~~l~~iP-~~~~----~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n   98 (440)
T 3zyj_A           33 QTCPSVCSCSNQ-----FSKVICVRKNLREVP-DGIS----TNTRLLNLHENQI----QIIKVNSFKHLRHLEILQLSRN   98 (440)
T ss_dssp             CCCCSSSEECTT-----SCEEECCSCCCSSCC-SCCC----TTCSEEECCSCCC----CEECTTTTSSCSSCCEEECCSS
T ss_pred             ccCCCCCEeCCC-----CCEEEeCCCCcCcCC-CCCC----CCCcEEEccCCcC----CeeCHHHhhCCCCCCEEECCCC
Confidence            468999998521     236899999999998 4443    5789999999998    4567789999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC-
Q psy16377         82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-  160 (1344)
Q Consensus        82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n-  160 (1344)
                      ++..+++.+|.++++|++|+|++|.+.       .+.+..|..+++|++|+|++|.++.++...|.++++|++|+|++| 
T Consensus        99 ~i~~i~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~  171 (440)
T 3zyj_A           99 HIRTIEIGAFNGLANLNTLELFDNRLT-------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK  171 (440)
T ss_dssp             CCCEECGGGGTTCSSCCEEECCSSCCS-------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             cCCccChhhccCCccCCEEECCCCcCC-------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence            999999999999999999999877654       244557999999999999999999999989999999999999984 


Q ss_pred             CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCC
Q psy16377        161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS  240 (1344)
Q Consensus       161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  240 (1344)
                      .+..++...|                 .++++|++|+|++|+++.++.   +..+++|+.|+|++|.++++.+..|.+++
T Consensus       172 ~l~~i~~~~~-----------------~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  231 (440)
T 3zyj_A          172 RLSYISEGAF-----------------EGLSNLRYLNLAMCNLREIPN---LTPLIKLDELDLSGNHLSAIRPGSFQGLM  231 (440)
T ss_dssp             TCCEECTTTT-----------------TTCSSCCEEECTTSCCSSCCC---CTTCSSCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CcceeCcchh-----------------hcccccCeecCCCCcCccccc---cCCCcccCEEECCCCccCccChhhhccCc
Confidence            4665554333                 348899999999999998874   78899999999999999999889999999


Q ss_pred             CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377        241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS  302 (1344)
Q Consensus       241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~  302 (1344)
                      +|++|+|++|.+..+++..|.++++|+.|+|++|.++.+++..|..+++|+.|+|++|.+..
T Consensus       232 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          232 HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            99999999999999888888999999999999999999888888888899999998887653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=5.2e-25  Score=249.57  Aligned_cols=234  Identities=22%  Similarity=0.404  Sum_probs=203.1

Q ss_pred             cccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeE
Q psy16377        576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEF  655 (1344)
Q Consensus       576 ~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l  655 (1344)
                      ..+.++++++.++.++. .++.+++.|++++|++.++.+..|.++++|++|++++|.|+.++...+.             
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~-------------   82 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK-------------   82 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS-------------
T ss_pred             CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc-------------
Confidence            46778888888887553 5677899999999999988888999999999999999987754321110             


Q ss_pred             EcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCcccccccccccc
Q psy16377        656 YLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEF  735 (1344)
Q Consensus       656 ~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~  735 (1344)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (270)
T 2o6q_A           83 --------------------------------------------------------------------------------   82 (270)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc
Q psy16377        736 DACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV  815 (1344)
Q Consensus       736 ~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~  815 (1344)
                                                        .     ...++.|+|++|.++.++...|.++++|+.|++++|+++.
T Consensus        83 ----------------------------------~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           83 ----------------------------------E-----LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             ----------------------------------S-----CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             ----------------------------------C-----CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence                                              0     0236788899999999999999999999999999999999


Q ss_pred             cccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccC
Q psy16377        816 ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT  895 (1344)
Q Consensus       816 i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~  895 (1344)
                      +.+..|.++++|++|+|++|+++.+++..|..+++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..+..
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  203 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS  203 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEecCCcccCCChhhHHHHHHHhhcCCc-cCCCCCeeecCCC
Q psy16377        896 NSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNK-VKDGLDISCVIDE  942 (1344)
Q Consensus       896 ~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~-v~~~~~~~C~~~~  942 (1344)
                      +++|+.|+|++|||.|+|+.+.|+..|+++.... +.+.....|..++
T Consensus       204 l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~~~  251 (270)
T 2o6q_A          204 LEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGG  251 (270)
T ss_dssp             CTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSSSC
T ss_pred             ccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCCCC
Confidence            9999999999999999998778999998765443 5566778996643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=4.7e-25  Score=269.57  Aligned_cols=260  Identities=23%  Similarity=0.369  Sum_probs=220.2

Q ss_pred             CCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCC
Q psy16377          2 FEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNC   81 (1344)
Q Consensus         2 ~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~   81 (1344)
                      ..||..|.|..     .+..|.|..+.++.+| .++.    .+++.|+|++|.+    ..+++..|.++++|++|+|++|
T Consensus        44 ~~Cp~~C~C~~-----~~~~v~c~~~~l~~iP-~~~~----~~l~~L~L~~n~i----~~~~~~~~~~l~~L~~L~Ls~n  109 (452)
T 3zyi_A           44 QNCPSVCSCSN-----QFSKVVCTRRGLSEVP-QGIP----SNTRYLNLMENNI----QMIQADTFRHLHHLEVLQLGRN  109 (452)
T ss_dssp             CCCCTTSEECS-----SSCEEECCSSCCSSCC-SCCC----TTCSEEECCSSCC----CEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCCEECC-----CCcEEEECCCCcCccC-CCCC----CCccEEECcCCcC----ceECHHHcCCCCCCCEEECCCC
Confidence            46888898842     1236899999999998 4442    5799999999998    4467789999999999999999


Q ss_pred             cCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC-
Q psy16377         82 KLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN-  160 (1344)
Q Consensus        82 ~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n-  160 (1344)
                      ++..+++.+|.++++|++|+|++|.+.       .+.+..|.++++|++|+|++|.++.++...|.++++|++|++++| 
T Consensus       110 ~i~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~  182 (452)
T 3zyi_A          110 SIRQIEVGAFNGLASLNTLELFDNWLT-------VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK  182 (452)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCS-------BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred             ccCCcChhhccCcccCCEEECCCCcCC-------ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence            999999899999999999999877654       344566899999999999999999999988999999999999984 


Q ss_pred             CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCC
Q psy16377        161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS  240 (1344)
Q Consensus       161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  240 (1344)
                      .+..++...|                 .++++|++|+|++|+++.++   .+..+++|+.|+|++|.+.++.+..|.+++
T Consensus       183 ~l~~i~~~~~-----------------~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  242 (452)
T 3zyi_A          183 KLEYISEGAF-----------------EGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEMSGNHFPEIRPGSFHGLS  242 (452)
T ss_dssp             TCCEECTTTT-----------------TTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEECTTSCCSEECGGGGTTCT
T ss_pred             CccccChhhc-----------------cCCCCCCEEECCCCcccccc---cccccccccEEECcCCcCcccCcccccCcc
Confidence            4665554333                 34789999999999999886   378889999999999999999888999999


Q ss_pred             CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377        241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS  302 (1344)
Q Consensus       241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~  302 (1344)
                      +|++|+|++|.+..+++..|.++++|+.|+|++|.++.+++..|..+++|+.|+|++|.+..
T Consensus       243 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          243 SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            99999999999998888888888899999999998888888888888888888888887653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.1e-24  Score=249.07  Aligned_cols=162  Identities=23%  Similarity=0.415  Sum_probs=150.8

Q ss_pred             CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377        778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ  857 (1344)
Q Consensus       778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  857 (1344)
                      .++.|++++|.++.+++..|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+++..|.++++|++|+|+
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCee
Q psy16377        858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDIS  937 (1344)
Q Consensus       858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~  937 (1344)
                      +|+|+.+.+..|..+++|+.|+|++|+++.+++..+..+++|+.|++++|||.|+|+ +.|+..|+++..   .....+.
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~---~~~~~~~  261 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFR---GSSSEVP  261 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCC---SEECCCB
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhcc---cccCccc
Confidence            999999999999999999999999999999999889999999999999999999999 689999998764   2346788


Q ss_pred             ecCCCC
Q psy16377        938 CVIDES  943 (1344)
Q Consensus       938 C~~~~~  943 (1344)
                      |..|..
T Consensus       262 c~~p~~  267 (285)
T 1ozn_A          262 CSLPQR  267 (285)
T ss_dssp             EEESGG
T ss_pred             cCCchH
Confidence            988765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=256.53  Aligned_cols=280  Identities=22%  Similarity=0.289  Sum_probs=200.2

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      ++.....+++++.++.+|..  +.  ++|++|++++|.++++.+..|.++++|++|++++|.++.+++..|.++++|++|
T Consensus        30 C~~~~~c~~~~~~l~~iP~~--~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSG--LT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTT--CC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCeEeeCCCCCccccccc--cc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            34556689999999999874  33  589999999999999877789999999999999999999888888999999999


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCc-ccccCCCcccEEEccCC-CCCccccccccCCCcccEEEecC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE-TTFIGLIRLIILNLSNN-ELTRIDAKTFKDLVFLQRLDLRN  347 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~  347 (1344)
                      ++++|.++.+++..|.++++|++|++++|.++.  +.. ..+..+++|+.|++++| .+..+.+..|..+++|+.|++++
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            999999999998888899999999999998875  444 46777888888888887 46666666677777777777777


Q ss_pred             CCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch
Q psy16377        348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS  427 (1344)
Q Consensus       348 n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~  427 (1344)
                      |.+..+.+..|..+++|+.|++++|.+.......+..+++|+.|++++|.+.+.....+..                   
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------  244 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------------------  244 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred             CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence            7777666666677777777777777766555555555666666666666666544322211                   


Q ss_pred             hhcCCCCccEEEccCCCCCcc----CcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377        428 ALSELPFLKTLDLGENQISKI----ENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                       ......++.++++++.+.+.    .+..+..+++|+.|++++|.++.++...|..+++|++|++++|++..
T Consensus       245 -~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          245 -GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence             12234445555555544431    23345556666666666666666666556666777777777776554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=2.6e-25  Score=257.13  Aligned_cols=256  Identities=26%  Similarity=0.384  Sum_probs=208.6

Q ss_pred             CCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcC
Q psy16377          4 VPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKL   83 (1344)
Q Consensus         4 ~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i   83 (1344)
                      ||+.|.|..       ..+.|....++.+| ..+   + .++++|++++|.+    ..+++..|.++++|++|+|++|.+
T Consensus         1 CP~~C~C~~-------~~l~c~~~~l~~ip-~~~---~-~~l~~L~L~~n~l----~~i~~~~~~~l~~L~~L~L~~n~l   64 (306)
T 2z66_A            1 CPSRCSCSG-------TEIRCNSKGLTSVP-TGI---P-SSATRLELESNKL----QSLPHGVFDKLTQLTKLSLSSNGL   64 (306)
T ss_dssp             CCTTCEEET-------TEEECCSSCCSSCC-SCC---C-TTCCEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CcCCCeeCC-------CEEEcCCCCcccCC-CCC---C-CCCCEEECCCCcc----CccCHhHhhccccCCEEECCCCcc
Confidence            899998842       26899999999998 333   2 5799999999998    467878899999999999999999


Q ss_pred             CccC--hhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccCh-hhhcCCCCCCEEECCCC
Q psy16377         84 VELP--VDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISD-DVFCSLANIQTLNLSRN  160 (1344)
Q Consensus        84 ~~l~--~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~Ls~n  160 (1344)
                      ..+.  +..+.++++|++|+|++|.+.        .+|..+.++++|++|++++|.++.++. ..+..+++|++|++++|
T Consensus        65 ~~~~~~~~~~~~~~~L~~L~Ls~n~i~--------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           65 SFKGCCSQSDFGTTSLKYLDLSFNGVI--------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             CEEEEEEHHHHSCSCCCEEECCSCSEE--------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred             CcccCcccccccccccCEEECCCCccc--------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence            8663  356778999999999766543        356678889999999999999998876 67888999999999999


Q ss_pred             CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC--CCCCccCCCCCCCCEEEccCCCCCCcChhhhcC
Q psy16377        161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT--LGDYSGITKFRRLQNLHLENNEISQIAPNAFVA  238 (1344)
Q Consensus       161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~--l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~  238 (1344)
                      .+..+....+                 .++++|++|++++|.++.  ++.  .+..+++|+.|++++|.++++.+..|.+
T Consensus       137 ~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          137 HTRVAFNGIF-----------------NGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             CCEECSTTTT-----------------TTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cCCccchhhc-----------------ccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            8876544333                 347889999999998876  443  5888899999999999998888888888


Q ss_pred             CCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCC-CCCEEEccCCCCCC
Q psy16377        239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE-QLLVLDLSSNHLSS  302 (1344)
Q Consensus       239 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~n~l~~  302 (1344)
                      +++|++|++++|.+..++...|..+++|+.|++++|.+...++..+..++ +|+.|++++|.+..
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            89999999999988888887788888888888888888877776667774 78888888888764

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=1.1e-26  Score=234.81  Aligned_cols=137  Identities=23%  Similarity=0.432  Sum_probs=126.7

Q ss_pred             CccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCc
Q psy16377       1025 KHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEW 1104 (1344)
Q Consensus      1025 ~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w 1104 (1344)
                      +.||.+..+.++|+.||...|++.||++++||++|+++||+.||..+.                                
T Consensus         4 ~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~--------------------------------   51 (149)
T 1fyx_A            4 IXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWII--------------------------------   51 (149)
T ss_dssp             CCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHH--------------------------------
T ss_pred             ccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHH--------------------------------
Confidence            456777777789999999999999997667999999999999999999                                


Q ss_pred             cchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch---hhHHHHhhhccEEE
Q psy16377       1105 SRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD---IELKPYLKSCMKIR 1181 (1344)
Q Consensus      1105 ~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l~ 1181 (1344)
                         ++|.++|++||++|+|+|++|++|+||++|++.|++++++++..++|+|+++++++..++   ++|+.+|+++|||+
T Consensus        52 ---~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p~~~~~Lr~~l~~~t~l~  128 (149)
T 1fyx_A           52 ---DNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFXKLRKIMNTKTYLE  128 (149)
T ss_dssp             ---HHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSEE
T ss_pred             ---HHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChhhcChHHHHHHHHhcCCCEEE
Confidence               999999999999999999999999999999999999999999999999999999887654   69999999999999


Q ss_pred             eCc-----hhhHHHhHhhcC
Q psy16377       1182 WGE-----KRFWERLRYAMP 1196 (1344)
Q Consensus      1182 w~~-----~~Fw~~l~~~~p 1196 (1344)
                      |++     ++||++|||||.
T Consensus       129 W~~~~~~~~~FW~~Lr~al~  148 (149)
T 1fyx_A          129 WPMDEAQREGFWVNLRAAIK  148 (149)
T ss_dssp             CCSSGGGHHHHHHHHHHHHH
T ss_pred             CCCCCccchHHHHHHHHHhc
Confidence            987     799999999985

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=7.7e-25  Score=250.38  Aligned_cols=237  Identities=22%  Similarity=0.368  Sum_probs=194.9

Q ss_pred             CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      .||+.|.|....    .+.+.|..+.+..+| ..+    +.+++.|+++++.+    ..+++..|.++++|++|+|++|.
T Consensus         1 ~CP~~C~C~~~~----~~~~~c~~~~l~~ip-~~~----~~~l~~L~l~~n~i----~~~~~~~~~~~~~L~~L~l~~n~   67 (285)
T 1ozn_A            1 PCPGACVCYNEP----KVTTSCPQQGLQAVP-VGI----PAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNV   67 (285)
T ss_dssp             CCCTTCEEECSS----SCEEECCSSCCSSCC-TTC----CTTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCceECCCC----CeEEEcCcCCcccCC-cCC----CCCceEEEeeCCcC----CccCHHHcccCCCCCEEECCCCc
Confidence            499999996322    247899999999998 332    35799999999998    44677789999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEEccccc-CcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCC
Q psy16377         83 LVELPVDVFSGLRNLKRLTINTRN-LQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS  161 (1344)
Q Consensus        83 i~~l~~~~f~~l~~L~~L~Ls~n~-~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~  161 (1344)
                      +..+++.+|+++++|++|+|++|. +.       ...|..|..+++|++|+|++|.++.+++..|.++++|++|++++|.
T Consensus        68 l~~~~~~~~~~l~~L~~L~l~~n~~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  140 (285)
T 1ozn_A           68 LARIDAAAFTGLALLEQLDLSDNAQLR-------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA  140 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCTTCC-------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cceeCHhhcCCccCCCEEeCCCCCCcc-------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence            999987889999999999998664 32       2347788899999999999999999888888889999999999998


Q ss_pred             CCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377        162 IRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS  241 (1344)
Q Consensus       162 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  241 (1344)
                      ++.++...+                 .++++|++|++++|+++.++.. .+..+++|+.|++++|.+.+..|..|.++++
T Consensus       141 l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          141 LQALPDDTF-----------------RDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             CCCCCTTTT-----------------TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             ccccCHhHh-----------------ccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCcccccCHhHccCccc
Confidence            887765433                 3378888888888888888765 6888888888888888888888888888888


Q ss_pred             ccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377        242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV  277 (1344)
Q Consensus       242 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  277 (1344)
                      |++|++++|.+..++...|..+++|+.|++++|.+.
T Consensus       203 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            888888888888888777788888888888887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=4.7e-24  Score=242.60  Aligned_cols=162  Identities=27%  Similarity=0.429  Sum_probs=141.2

Q ss_pred             ccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccc-cchhcCCCccceeecccccccccCcccccCccccc----e
Q psy16377        779 ATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVIL-NQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLS----E  853 (1344)
Q Consensus       779 l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~----~  853 (1344)
                      ++.|++++|.+..++...|.++++|+.|++++|+++.+. +..|.++++|++|+|++|+++.+++..|..+++|+    .
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            556777777777777777888899999999999998875 78899999999999999999999998998888888    8


Q ss_pred             eeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCC
Q psy16377        854 LYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDG  933 (1344)
Q Consensus       854 L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~  933 (1344)
                      |+|++|.|+.+++..|.. .+|+.|+|++|+|+.+++..+..+++|+.|++++|||.|+|+.+.|+..|++.....  ..
T Consensus       182 L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~--~~  258 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK--EQ  258 (276)
T ss_dssp             EECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG--BC
T ss_pred             eecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc--cC
Confidence            999999999999988875 489999999999999999999999999999999999999998889999999876543  34


Q ss_pred             CCeeecCCCC
Q psy16377        934 LDISCVIDES  943 (1344)
Q Consensus       934 ~~~~C~~~~~  943 (1344)
                      .+..|..++.
T Consensus       259 ~~~~C~~~~~  268 (276)
T 2z62_A          259 GSAKCSGSGK  268 (276)
T ss_dssp             SCCBBTTTCC
T ss_pred             CCceeeCCCC
Confidence            5678977653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.91  E-value=7.1e-24  Score=233.69  Aligned_cols=183  Identities=30%  Similarity=0.500  Sum_probs=169.6

Q ss_pred             cEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccccc
Q psy16377        759 NVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT  838 (1344)
Q Consensus       759 ~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~  838 (1344)
                      ..|+|++.++..+|..+|.+++.|+|++|+++.+.+..|.++++|+.|+|++|+|..+.+..|.++++|++|+|++|+|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHH
Q psy16377        839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQE  918 (1344)
Q Consensus       839 ~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~  918 (1344)
                      .+++..|..+++|++|+|++|+|+.++. .+..+++|++|+|++|+|+.+++..+..+++|+.|+|++|||.|+|..+.+
T Consensus       102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  180 (229)
T 3e6j_A          102 VLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMY  180 (229)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHH
T ss_pred             ccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHH
Confidence            9999999999999999999999999864 567899999999999999999999999999999999999999999987899


Q ss_pred             HHHHHhhcCCcc--------CCCCCeeecCCC
Q psy16377        919 LQTWIIDNSNKV--------KDGLDISCVIDE  942 (1344)
Q Consensus       919 l~~w~~~~~~~v--------~~~~~~~C~~~~  942 (1344)
                      ++.|+..+...+        .+...+.|..++
T Consensus       181 l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~~  212 (229)
T 3e6j_A          181 LRNWVADHTSIAMRWDGKAVNDPDSAKCAGTN  212 (229)
T ss_dssp             HHHHHHHCGGGEEEESSSEEECTTCSBBTTTC
T ss_pred             HHHHHHhCccccccccCcccCCCCcCccCCCC
Confidence            999998765443        466778887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=6.4e-25  Score=278.47  Aligned_cols=328  Identities=15%  Similarity=0.138  Sum_probs=190.3

Q ss_pred             CCCCCCEEEccCCCCCCc----ChhhhcCCCCccEEEeeCCCCCCCCh----hhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377        214 KFRRLQNLHLENNEISQI----APNAFVALSSLRILNISSNHLVSLPE----GLFSSCRDISEIYAQKNSLVELSRGLFH  285 (1344)
Q Consensus       214 ~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~~L~~L~L~~n~l~~l~~~~~~  285 (1344)
                      ++++|++|+|++|.+++.    .+..+.++++|++|++++|.+..+..    ..+..+++|++|++++|.+..++ ..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence            344555555555544333    12233455666666666666553332    23445677777777777666655 3456


Q ss_pred             CCCCCCEEEccCCCCCCC-CCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccch-hhhcCCCC
Q psy16377        286 KLEQLLVLDLSSNHLSSN-HIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYN  363 (1344)
Q Consensus       286 ~l~~L~~L~Ls~n~l~~~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~  363 (1344)
                      ++++|+.|+++....... ......+..+++|+.|+++++....+ +..+..+++|++|++++|.+..... ..+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            777777777765322100 01133456667788888776543333 4456677788888888887543322 23567788


Q ss_pred             ccEEEccCCcccccccccccCCCceeEEEccC-----------CcCCCCChh-hhcCCCCCcEEEccCCCCC-ccchhhc
Q psy16377        364 LHTIYLSENRIHHITAHLFNGLYVLSKLTLSN-----------NLLVNIDSK-AFKNCSALKELDLSSNAIV-EIPSALS  430 (1344)
Q Consensus       364 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~  430 (1344)
                      |+.|+++++......+..+..+++|+.|++++           +.++..... .+..+++|++|+++.+.++ ..+..+.
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            88888873322222333345667788888873           344432222 2345778888888777776 3334444


Q ss_pred             C-CCCccEEEcc----CCCCCccC-----cchhcCCCCCcEEEcccCC--CCCCC-cccccCCCCccEEEcCCCcCcccc
Q psy16377        431 E-LPFLKTLDLG----ENQISKIE-----NGSFKNLQQLTDLRLVDNN--IGNLS-SGMLYELPSLEVLNLSKNKIHQIE  497 (1344)
Q Consensus       431 ~-l~~L~~L~Ls----~n~i~~~~-----~~~~~~l~~L~~L~L~~n~--l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~  497 (1344)
                      . +++|+.|+++    .|.+++.+     +..+.++++|+.|+++.|.  ++... ......+++|+.|++++|+++...
T Consensus       400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  479 (592)
T 3ogk_B          400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG  479 (592)
T ss_dssp             HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred             hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence            3 7778888885    45565532     2235567778888876433  32211 122234677888888877776533


Q ss_pred             c-ccccCCCccceEeccccCCCC--hhhHhhcCCCCcEEEcCCCCCccc
Q psy16377        498 I-GTFEKNKRLAAIRLDSNFLTD--INGVFTYLAQLLWLNLSENHLVWF  543 (1344)
Q Consensus       498 ~-~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~l~~~  543 (1344)
                      . ..+..+++|+.|++++|.+++  ++..+..+++|+.|++++|+++..
T Consensus       480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            2 234566777777777777653  344455677777777777776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.7e-24  Score=247.99  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=48.9

Q ss_pred             CcccEEECCCCCCCC---CCCCccCCCCCCCCEEEccC-CCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCC
Q psy16377        191 MDLRILDLSHNKLRT---LGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDI  266 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~---l~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L  266 (1344)
                      .+++.|+|++|.+++   ++.  .+.++++|++|+|++ |.+.+..|..|+++++|++|++++|.+....+..|..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            345555555555543   222  355555555555552 55554445555555555555555555443222233444444


Q ss_pred             cEEEcccCcccccChhhhcCCCCCCEEEccCCCC
Q psy16377        267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL  300 (1344)
Q Consensus       267 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l  300 (1344)
                      ++|++++|.+....+..|..+++|++|++++|.+
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence            4444444444422222233344444444444333

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=3.3e-24  Score=248.40  Aligned_cols=249  Identities=22%  Similarity=0.291  Sum_probs=224.5

Q ss_pred             CCCCEEEccCCCCCC--cChhhhcCCCCccEEEeeC-CCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377        216 RRLQNLHLENNEISQ--IAPNAFVALSSLRILNISS-NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV  292 (1344)
Q Consensus       216 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  292 (1344)
                      .+++.|+|++|.+.+  ..|..|.++++|++|++++ |.+....+..|..+++|++|++++|.+....+..|.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  7889999999999999995 8888655566799999999999999999666667799999999


Q ss_pred             EEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCC-cccEEEecCCCccccchhhhcCCCCccEEEccC
Q psy16377        293 LDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV-FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE  371 (1344)
Q Consensus       293 L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~  371 (1344)
                      |++++|.+.+  ..+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|.+....+..|..+. |+.|++++
T Consensus       130 L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSG--TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEES--CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EeCCCCccCC--cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            9999999986  4467889999999999999999977788888888 999999999999876667788887 99999999


Q ss_pred             CcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCc
Q psy16377        372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIEN  450 (1344)
Q Consensus       372 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~  450 (1344)
                      |.+.+..+..|..+++|+.|++++|.+.+..+. +..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            999999999999999999999999999877665 788999999999999998 889999999999999999999998777


Q ss_pred             chhcCCCCCcEEEcccCCC
Q psy16377        451 GSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       451 ~~~~~l~~L~~L~L~~n~l  469 (1344)
                      .. ..+++|+.|++++|..
T Consensus       286 ~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          286 QG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CS-TTGGGSCGGGTCSSSE
T ss_pred             CC-ccccccChHHhcCCCC
Confidence            65 7889999999999973

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=1.4e-22  Score=254.04  Aligned_cols=226  Identities=25%  Similarity=0.244  Sum_probs=122.1

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      ++|++|+|++|+++.++.     .+++|++|+|++|.++++.+    .+++|+.|++++|.++.+|..    +++|++|+
T Consensus        81 ~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~  147 (622)
T 3g06_A           81 PELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELS  147 (622)
T ss_dssp             TTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEE
T ss_pred             CCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEE
Confidence            445555555555554443     23455555555555554421    344555555555555554432    24555555


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +++|.++.++.    .+++|+.|++++|.++.  ++    ..+++|+.|++++|.++.++.    ..++|+.|++++|.+
T Consensus       148 Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~--l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l  213 (622)
T 3g06_A          148 VSDNQLASLPA----LPSELCKLWAYNNQLTS--LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRL  213 (622)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSC--CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred             CcCCcCCCcCC----ccCCCCEEECCCCCCCC--Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcc
Confidence            55555554442    23455555555555544  22    234555555555555554432    124566666666666


Q ss_pred             cccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhc
Q psy16377        351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALS  430 (1344)
Q Consensus       351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~  430 (1344)
                      ..++.    .+++|+.|++++|.+++++    ..+++|+.|++++|.+..++.    .+++|+.|+|++|.++.+|..+.
T Consensus       214 ~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~  281 (622)
T 3g06_A          214 TSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLI  281 (622)
T ss_dssp             SSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGG
T ss_pred             cccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHh
Confidence            55543    2355666666666665543    234566666666666665543    34566677777776666666666


Q ss_pred             CCCCccEEEccCCCCCccCcchhcC
Q psy16377        431 ELPFLKTLDLGENQISKIENGSFKN  455 (1344)
Q Consensus       431 ~l~~L~~L~Ls~n~i~~~~~~~~~~  455 (1344)
                      .+++|+.|+|++|.+++..+..+..
T Consensus       282 ~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          282 HLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             GSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             hccccCEEEecCCCCCCcCHHHHHh
Confidence            6677777777777666655554443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=8.3e-23  Score=256.01  Aligned_cols=264  Identities=22%  Similarity=0.260  Sum_probs=157.4

Q ss_pred             cccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEcc
Q psy16377        315 RLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLS  394 (1344)
Q Consensus       315 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  394 (1344)
                      +++.|++++|.++.++....   ++|+.|++++|.++.++.    .+++|+.|+|++|++++++.    .+++|+.|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            45666666666665543222   456666666666665554    34556666666665554432    34455555555


Q ss_pred             CCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCc
Q psy16377        395 NNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSS  474 (1344)
Q Consensus       395 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  474 (1344)
                      +|.+..+..    .+++|+.|++++|.++.+|..   +++|++|++++|                        .++.++.
T Consensus       110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N------------------------~l~~l~~  158 (622)
T 3g06_A          110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN------------------------QLASLPA  158 (622)
T ss_dssp             SCCCCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS------------------------CCSCCCC
T ss_pred             CCcCCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC------------------------cCCCcCC
Confidence            555554432    234455555555555544432   244445555444                        4444432


Q ss_pred             ccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccE
Q psy16377        475 GMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKW  554 (1344)
Q Consensus       475 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~  554 (1344)
                          .+++|+.|++++|.++.++    ..+++|+.|++++|.++.+|..   +++|+.|++++|.++.++.  .+++|+.
T Consensus       159 ----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~--~~~~L~~  225 (622)
T 3g06_A          159 ----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA--LPSGLKE  225 (622)
T ss_dssp             ----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC--CCTTCCE
T ss_pred             ----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC--CCCCCCE
Confidence                1344555555555554443    2234455555555555554432   3556666666666665442  3466777


Q ss_pred             EEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCc
Q psy16377        555 LDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDIT  634 (1344)
Q Consensus       555 L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~  634 (1344)
                      |++++|.++.++.     .+++|+.|++++|+|+.++.  .+.+|+.|+|++|+|..+ |..|.++++|+.|+|++|.++
T Consensus       226 L~Ls~N~L~~lp~-----~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          226 LIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             EECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSCCCC
T ss_pred             EEccCCccCcCCC-----CCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCCCCC
Confidence            7777777777652     34678888888888887765  567899999999988844 677889999999999999998


Q ss_pred             ccccccc
Q psy16377        635 KLDLTAL  641 (1344)
Q Consensus       635 ~l~~~~l  641 (1344)
                      +..+..+
T Consensus       298 ~~~~~~l  304 (622)
T 3g06_A          298 ERTLQAL  304 (622)
T ss_dssp             HHHHHHH
T ss_pred             CcCHHHH
Confidence            8766544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=7.4e-25  Score=277.91  Aligned_cols=297  Identities=15%  Similarity=0.054  Sum_probs=140.8

Q ss_pred             CCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC---CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCC
Q psy16377        214 KFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV---SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQL  290 (1344)
Q Consensus       214 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~---~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  290 (1344)
                      ++++|+.|++++|.+.++ +..+.++++|++|++++....   ......+..+++|+.|.+.++....++. .+..+++|
T Consensus       218 ~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L  295 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQI  295 (592)
T ss_dssp             HCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGC
T ss_pred             hCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCC
Confidence            344455555544444442 344444455555555432111   0001122334455555554433333322 23445555


Q ss_pred             CEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc-cccccccCCCcccEEEecC-----------CCccccchh-h
Q psy16377        291 LVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR-IDAKTFKDLVFLQRLDLRN-----------NSIGYIEDN-A  357 (1344)
Q Consensus       291 ~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~-----------n~l~~i~~~-~  357 (1344)
                      ++|++++|.++...+ ...+..+++|+.|+++ +.+.. ..+..+..+++|++|++++           +.++..... .
T Consensus       296 ~~L~Ls~~~l~~~~~-~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l  373 (592)
T 3ogk_B          296 RKLDLLYALLETEDH-CTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL  373 (592)
T ss_dssp             CEEEETTCCCCHHHH-HHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred             cEEecCCCcCCHHHH-HHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence            555555555432100 1123445555555555 22221 1112223455566666662           333322111 1


Q ss_pred             hcCCCCccEEEccCCcccccccccccC-CCceeEEEcc----CCcCCCC-----ChhhhcCCCCCcEEEccCCC--CC-c
Q psy16377        358 FLSLYNLHTIYLSENRIHHITAHLFNG-LYVLSKLTLS----NNLLVNI-----DSKAFKNCSALKELDLSSNA--IV-E  424 (1344)
Q Consensus       358 f~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~-~  424 (1344)
                      +..+++|+.|+++.+.+++.....+.. +++|+.|+++    .|.+++.     .+..+.++++|+.|++++|.  ++ .
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            234566666666666665544444433 5666666664    4445443     12234556777777776543  33 2


Q ss_pred             cchhh-cCCCCccEEEccCCCCCccC-cchhcCCCCCcEEEcccCCCCCC-CcccccCCCCccEEEcCCCcCcccccccc
Q psy16377        425 IPSAL-SELPFLKTLDLGENQISKIE-NGSFKNLQQLTDLRLVDNNIGNL-SSGMLYELPSLEVLNLSKNKIHQIEIGTF  501 (1344)
Q Consensus       425 lp~~l-~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  501 (1344)
                      .+..+ ..+++|++|++++|.+++.. +..+.++++|+.|++++|.++.. ....+..+++|+.|++++|+++......+
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            22222 34667777777777766532 22345667777777777776322 11223456777777777777665533333


Q ss_pred             c-CCCccceEeccc
Q psy16377        502 E-KNKRLAAIRLDS  514 (1344)
Q Consensus       502 ~-~l~~L~~L~L~~  514 (1344)
                      . .++.+....+..
T Consensus       534 ~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          534 QMARPYWNIELIPS  547 (592)
T ss_dssp             GGCCTTEEEEEECC
T ss_pred             HHhCCCcEEEEecC
Confidence            2 345454444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.89  E-value=6e-23  Score=242.82  Aligned_cols=211  Identities=27%  Similarity=0.505  Sum_probs=177.8

Q ss_pred             CCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCC-CCCCccEEEccCCcccccccc
Q psy16377        741 EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFI-GRKNMLSLYVNNSQIEVILNQ  819 (1344)
Q Consensus       741 ~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~-~l~~L~~L~l~~n~i~~i~~~  819 (1344)
                      ...||..|.|..      .+++|+++++..+|..+|..++.|+|++|+|+.++...|. ++++|+.|+|++|+|+.+.+.
T Consensus         9 ~~~Cp~~C~C~~------~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~   82 (361)
T 2xot_A            9 VVSCPANCLCAS------NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE   82 (361)
T ss_dssp             CTTCCTTCEEET------TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT
T ss_pred             CCCCCCCCEECC------CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh
Confidence            467999999963      4899999999999999999999999999999999999998 999999999999999999999


Q ss_pred             hhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccccccc---CC
Q psy16377        820 TFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN---TN  896 (1344)
Q Consensus       820 ~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~---~~  896 (1344)
                      +|.++++|+.|+|++|+|+.+++..|.++++|+.|+|++|+|+.+++..|..+++|+.|+|++|+|+.++...|.   .+
T Consensus        83 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A           83 AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL  162 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred             hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887662   34


Q ss_pred             CCC--------------------------cEEEecCCcccCCChhhHH-HHHHHhhcCCccCC-CCCeeecCCCCCCCcc
Q psy16377        897 SML--------------------------RKVYLGNNPFSCSCATLQE-LQTWIIDNSNKVKD-GLDISCVIDESSPPIR  948 (1344)
Q Consensus       897 ~~L--------------------------~~L~l~~Np~~C~C~~l~~-l~~w~~~~~~~v~~-~~~~~C~~~~~~~~~~  948 (1344)
                      ++|                          +.|+|++|||.|||+ +.| +..|+.+....+.+ ..++.|..|....   
T Consensus       163 ~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~-l~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~---  238 (361)
T 2xot_A          163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK-LYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH---  238 (361)
T ss_dssp             TTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH-HHHHHHHHHHTTCHHHHTTGGGCEEESSSCCE---
T ss_pred             CcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC-cHHHHHHHHHhcCCchhccCcCCEeCCChHHc---
Confidence            443                          457888999999998 566 57898765544444 3679999886432   


Q ss_pred             ccccCCcccccCc
Q psy16377        949 KEIDLNSTTCTEY  961 (1344)
Q Consensus       949 ~~~~~~~~~C~~~  961 (1344)
                      +........|...
T Consensus       239 ~~~~~~~~~C~~~  251 (361)
T 2xot_A          239 NIFSLDFFNCSEY  251 (361)
T ss_dssp             EGGGCCCTTCCSC
T ss_pred             CccccccccCCCc
Confidence            2334445568754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.89  E-value=7.9e-23  Score=218.62  Aligned_cols=169  Identities=33%  Similarity=0.620  Sum_probs=134.0

Q ss_pred             CCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377        742 MTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF  821 (1344)
Q Consensus       742 ~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f  821 (1344)
                      ..||..|+|..      .+++|+++++.++|..+|..++.|+|++|+++.++                         ..|
T Consensus         2 ~~CP~~C~C~~------~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip-------------------------~~~   50 (193)
T 2wfh_A            2 SRCPTECTCLD------TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVP-------------------------KEL   50 (193)
T ss_dssp             --CCTTCEEET------TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCC-------------------------GGG
T ss_pred             CCCCCCCEeCC------CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhH-------------------------HHh
Confidence            36999999952      47899999999998877666666555555555443                         456


Q ss_pred             cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcE
Q psy16377        822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRK  901 (1344)
Q Consensus       822 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~  901 (1344)
                      .++++|+.|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.
T Consensus        51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (193)
T 2wfh_A           51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH  130 (193)
T ss_dssp             GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence            67777777777777777777777888888888888888888888888888888889999999998888888888899999


Q ss_pred             EEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377        902 VYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP  945 (1344)
Q Consensus       902 L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~  945 (1344)
                      |+|++|||.|+|+ +.||..|++...   .....++|..|....
T Consensus       131 L~L~~N~~~C~c~-l~~l~~~~~~~~---~~~~~~~C~~P~~l~  170 (193)
T 2wfh_A          131 LAIGANPLYCDCN-MQWLSDWVKSEY---KEPGIARCAGPGEMA  170 (193)
T ss_dssp             EECCSSCEECSGG-GHHHHHHHHHSS---CCCSCCBEEESGGGT
T ss_pred             EEeCCCCeecCCc-CHHHHHHHHhcc---CCCCCcCcCCchHHC
Confidence            9999999999999 799999997652   344668999886543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.5e-22  Score=218.01  Aligned_cols=182  Identities=33%  Similarity=0.611  Sum_probs=171.8

Q ss_pred             CCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcC
Q psy16377        744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG  823 (1344)
Q Consensus       744 cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~  823 (1344)
                      ||..|.|.      ...++|++.+++.+|..++..++.|++++|+++.++...|.++++|+.|++++|+++.+.+..|.+
T Consensus         1 Cp~~C~C~------~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCS------GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEE------TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEEC------CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence            88999994      247999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEE
Q psy16377        824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVY  903 (1344)
Q Consensus       824 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~  903 (1344)
                      +++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+++.+++..+..+++|+.|+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             ecCCcccCCChhhHHHHHHHhhcCCccC
Q psy16377        904 LGNNPFSCSCATLQELQTWIIDNSNKVK  931 (1344)
Q Consensus       904 l~~Np~~C~C~~l~~l~~w~~~~~~~v~  931 (1344)
                      +++|+|.|+|..+.++..|..+....+.
T Consensus       155 l~~N~~~~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          155 LHDNPWDCTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred             ecCCCeecCCCCHHHHHHHHHhCCceee
Confidence            9999999999988999999877665554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=1.3e-23  Score=244.00  Aligned_cols=261  Identities=21%  Similarity=0.203  Sum_probs=201.8

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      ..++.++++.+.+...+.. .+..+++|++|+|++|.++++.+..|.++++|++|+|++|.+..+++  |..+++|++|+
T Consensus        10 ~~l~i~~ls~~~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~   86 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLD   86 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHH-HHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEE
T ss_pred             CceeEeeccccchhhhHHH-HhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEE
Confidence            4567778888877655443 45667889999999999999888889999999999999998887665  78889999999


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +++|.++.++.     .++|+.|++++|.+++  +.   ...+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus        87 Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~--~~---~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           87 LNNNYVQELLV-----GPSIETLHAANNNISR--VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             CCSSEEEEEEE-----CTTCCEEECCSSCCSE--EE---ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             CcCCccccccC-----CCCcCEEECCCCccCC--cC---ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            99998887763     3789999999988875  22   23467788888988888888877888888888888888888


Q ss_pred             cccchhhh-cCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377        351 GYIEDNAF-LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL  429 (1344)
Q Consensus       351 ~~i~~~~f-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l  429 (1344)
                      ..+....+ ..+++|+.|++++|.+.+....  ..+++|+.|++++|.+.++.+. |..+++|+.|++++|.+..+|..+
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~  233 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL  233 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCcccccc--cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence            87766555 3678888888888888776432  3467788888888887777554 677778888888888887777777


Q ss_pred             cCCCCccEEEccCCCCC-ccCcchhcCCCCCcEEEcccC
Q psy16377        430 SELPFLKTLDLGENQIS-KIENGSFKNLQQLTDLRLVDN  467 (1344)
Q Consensus       430 ~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n  467 (1344)
                      ..+++|+.|++++|.+. +..+..+..++.|+.|++.++
T Consensus       234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            77778888888888777 555556666666776666643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=3.7e-23  Score=240.16  Aligned_cols=259  Identities=23%  Similarity=0.254  Sum_probs=167.8

Q ss_pred             ccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEc
Q psy16377        242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNL  321 (1344)
Q Consensus       242 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~L  321 (1344)
                      ++.++++.+.+...+...+..+++|++|++++|.+..+++..|..+++|+.|++++|.+++  .  ..+..+++|++|++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~--~~~~~l~~L~~L~L   87 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--T--LDLESLSTLRTLDL   87 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE--E--EEETTCTTCCEEEC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc--c--hhhhhcCCCCEEEC
Confidence            3344444444444444455555556666666666655555555666666666666666543  1  12555666666666


Q ss_pred             cCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCC
Q psy16377        322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI  401 (1344)
Q Consensus       322 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  401 (1344)
                      ++|.++++.     ..++|+.|++++|.+..++..   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.++
T Consensus        88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            666655443     225677777777776665543   346677777777777777766677777777777777777776


Q ss_pred             Chhhh-cCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCC
Q psy16377        402 DSKAF-KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYEL  480 (1344)
Q Consensus       402 ~~~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  480 (1344)
                      .+..+ ..+++|+.|++++|.++.++.. ..+++|++|++++|.++++.+. |..+++|+.|++++|.++.++.. +..+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l  236 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFS  236 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcC
Confidence            65555 3577788888888887776543 3477788888888887777654 67777788888888877777654 6677


Q ss_pred             CCccEEEcCCCcCc-ccccccccCCCccceEecccc
Q psy16377        481 PSLEVLNLSKNKIH-QIEIGTFEKNKRLAAIRLDSN  515 (1344)
Q Consensus       481 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n  515 (1344)
                      ++|+.|++++|++. ...+..+..+++|+.|++.++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            77888888887776 444455666666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.9e-22  Score=224.31  Aligned_cols=184  Identities=33%  Similarity=0.562  Sum_probs=135.9

Q ss_pred             CCCC--CeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377        744 CPKN--CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTF  821 (1344)
Q Consensus       744 cp~~--c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f  821 (1344)
                      ||..  |+|..    ....++|++.++..+|..+|.+++.|+|++|.+..++..+|.++++|+.|+|++|+|+.+.+..|
T Consensus         4 Cp~~~gC~C~~----~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A            4 CETVTGCTCNE----GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             CHHHHSSEEEG----GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCCCCceEcCC----CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            4544  67742    23468888888888888888777777777777777766666666666666666666555555444


Q ss_pred             ------------------------cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCE
Q psy16377        822 ------------------------NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQV  877 (1344)
Q Consensus       822 ------------------------~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  877 (1344)
                                              .++++|++|+|++|+|+.+++..|.++++|++|+|++|+|+.+++..|..+++|++
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence                                    45555555555555555555555666777777777777777777777888888888


Q ss_pred             EEccCCCCcccccccccCCCCCcEEEecCCcccCC-ChhhHHHHHHHhhcCCccCC
Q psy16377        878 LQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCS-CATLQELQTWIIDNSNKVKD  932 (1344)
Q Consensus       878 L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~-C~~l~~l~~w~~~~~~~v~~  932 (1344)
                      |+|++|+|+.+++..+..+++|+.|+|++|||.|+ |+ +.|+..|++.+...+.+
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~l~~~~~~~~~~~~~  214 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE-ILYLSQWIRENSNKVKD  214 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT-HHHHHHHHHHSGGGBCC
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc-cHHHHHHHHhcccceee
Confidence            88888888888888888889999999999999999 77 79999999887766654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=1.6e-23  Score=265.73  Aligned_cols=205  Identities=15%  Similarity=0.069  Sum_probs=97.7

Q ss_pred             CCCcccEEEccCCCCCcccc-ccccCCCcccEEEecCCCccccch-hhhcCCCCccEEEccC---------Ccccccccc
Q psy16377        312 GLIRLIILNLSNNELTRIDA-KTFKDLVFLQRLDLRNNSIGYIED-NAFLSLYNLHTIYLSE---------NRIHHITAH  380 (1344)
Q Consensus       312 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~-~~f~~l~~L~~L~Ls~---------n~l~~~~~~  380 (1344)
                      .+++|+.|++++|.++.... ..+..+++|+.|++++| +..... .....+++|+.|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            44556666666655443211 12345566666666655 221111 1112355666666522         233322221


Q ss_pred             cc-cCCCceeEEEccCCcCCCCChhhhc-CCCCCcEEEcc--C----CCCCccc------hhhcCCCCccEEEccCCCCC
Q psy16377        381 LF-NGLYVLSKLTLSNNLLVNIDSKAFK-NCSALKELDLS--S----NAIVEIP------SALSELPFLKTLDLGENQIS  446 (1344)
Q Consensus       381 ~~-~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~lp------~~l~~l~~L~~L~Ls~n~i~  446 (1344)
                      .+ .++++|+.|.+..+.+++.....+. .+++|+.|+++  +    +.++..|      ..+..+++|+.|++++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            12 2355566665555555543333332 35666666666  2    3343221      2244556666666655 444


Q ss_pred             ccCcchhcC-CCCCcEEEcccCCCCCCCcccc-cCCCCccEEEcCCCcCcccccc-cccCCCccceEeccccCCC
Q psy16377        447 KIENGSFKN-LQQLTDLRLVDNNIGNLSSGML-YELPSLEVLNLSKNKIHQIEIG-TFEKNKRLAAIRLDSNFLT  518 (1344)
Q Consensus       447 ~~~~~~~~~-l~~L~~L~L~~n~l~~l~~~~~-~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~  518 (1344)
                      +.....+.. +++|+.|++++|.++......+ ..+++|++|++++|.++..... ....+++|+.|++++|.++
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            433333333 5666666666666533222112 4456666666666665433222 2233556666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=5.2e-24  Score=270.18  Aligned_cols=378  Identities=13%  Similarity=0.112  Sum_probs=225.4

Q ss_pred             cCCCCCCEEEcccccCcccCCcccccCCCcCC-CCCCCCEEEccCC-CCCcc-ChhhhcCCCCCCEEECCCCCCCCCCCc
Q psy16377         92 SGLRNLKRLTINTRNLQWDKSKKLDLVPGSLD-GLRELQVLNISSS-NIKSI-SDDVFCSLANIQTLNLSRNSIRDIDTL  168 (1344)
Q Consensus        92 ~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~-~l~~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~Ls~n~l~~l~~~  168 (1344)
                      ..+++|++|+|+++.+..       ..+..+. .+++|++|+|++| .++.. ....+.++++|++|+|++|.+++....
T Consensus       102 ~~~~~L~~L~L~~~~~~~-------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~  174 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTD-------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH  174 (594)
T ss_dssp             HHCTTCCEEEEESCBCCH-------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG
T ss_pred             HhCCCCCeEEeeCcEEcH-------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH
Confidence            355666666666544321       1111222 3566777777666 34321 122334567777777777665543322


Q ss_pred             chhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCC---ccCCCCCCCCEEEccCC-CCCCcChhhhcCCCCccE
Q psy16377        169 GFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDY---SGITKFRRLQNLHLENN-EISQIAPNAFVALSSLRI  244 (1344)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~---~~l~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~  244 (1344)
                      .+...             ...+++|+.|++++|. ..+...   ..+..+++|++|++++| .+.+ .+..+..+++|++
T Consensus       175 ~l~~~-------------~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~  239 (594)
T 2p1m_B          175 WLSHF-------------PDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEE  239 (594)
T ss_dssp             GGGGS-------------CTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSE
T ss_pred             HHHHH-------------hhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceE
Confidence            22100             1235677777777765 212111   01234577777777776 3333 4566667777777


Q ss_pred             EEeeCCC-------CCCCChhhhcCCCCCcEE-EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcc
Q psy16377        245 LNISSNH-------LVSLPEGLFSSCRDISEI-YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRL  316 (1344)
Q Consensus       245 L~Ls~n~-------l~~l~~~~f~~l~~L~~L-~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L  316 (1344)
                      |+++.+.       +..++. .+.++++|+.| .+.+.....++. .+..+++|++|++++|.++... ....+..+++|
T Consensus       240 L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~-l~~~~~~~~~L  316 (594)
T 2p1m_B          240 LGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYD-LVKLLCQCPKL  316 (594)
T ss_dssp             EECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHHH-HHHHHTTCTTC
T ss_pred             cccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHHH-HHHHHhcCCCc
Confidence            7765543       222332 45677778877 343333323332 2346778888888888755311 11224577888


Q ss_pred             cEEEccCCCCCccc-cccccCCCcccEEEecC---------CCccccchhhhc-CCCCccEEEccCCccccccccccc-C
Q psy16377        317 IILNLSNNELTRID-AKTFKDLVFLQRLDLRN---------NSIGYIEDNAFL-SLYNLHTIYLSENRIHHITAHLFN-G  384 (1344)
Q Consensus       317 ~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~---------n~l~~i~~~~f~-~l~~L~~L~Ls~n~l~~~~~~~~~-~  384 (1344)
                      +.|++++| +.... ......+++|+.|++.+         +.++......+. .+++|+.|.+..+.+++.....+. .
T Consensus       317 ~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~  395 (594)
T 2p1m_B          317 QRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN  395 (594)
T ss_dssp             CEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred             CEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence            88888877 33221 11223578888888843         334432222232 478899998888888766554443 5


Q ss_pred             CCceeEEEcc--C----CcCCCCCh-----hhhcCCCCCcEEEccCCCCC-ccchhhcC-CCCccEEEccCCCCCccCcc
Q psy16377        385 LYVLSKLTLS--N----NLLVNIDS-----KAFKNCSALKELDLSSNAIV-EIPSALSE-LPFLKTLDLGENQISKIENG  451 (1344)
Q Consensus       385 l~~L~~L~Ls--~----n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~Ls~n~i~~~~~~  451 (1344)
                      +++|+.|+++  +    +.++....     ..+..+++|+.|++++ .++ ..+..+.. +++|+.|++++|.+++....
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            7889999998  3    44553321     2366789999999977 555 33344444 88999999999998776555


Q ss_pred             hh-cCCCCCcEEEcccCCCCCCCc-ccccCCCCccEEEcCCCcCccc
Q psy16377        452 SF-KNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       452 ~~-~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      .+ .++++|+.|++++|.++.... .....+++|+.|++++|+++..
T Consensus       475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  521 (594)
T 2p1m_B          475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG  521 (594)
T ss_dssp             HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHH
T ss_pred             HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHH
Confidence            55 668999999999999844322 2345689999999999988443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.87  E-value=1.9e-21  Score=207.98  Aligned_cols=186  Identities=27%  Similarity=0.498  Sum_probs=139.8

Q ss_pred             CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhc
Q psy16377        743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFN  822 (1344)
Q Consensus       743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~  822 (1344)
                      .||..|.|..      ..++|+++++.++|..+|..++.|++++|+++.++..                       ..|.
T Consensus         1 ~CP~~C~C~~------~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-----------------------~~~~   51 (192)
T 1w8a_A            1 DCPAMCHCEG------TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD-----------------------GLFG   51 (192)
T ss_dssp             CCCTTSEEET------TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS-----------------------CSGG
T ss_pred             CcCCCCEECC------CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCc-----------------------cccc
Confidence            4899999963      4788999888888887766666666665555555432                       2366


Q ss_pred             CCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEE
Q psy16377        823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV  902 (1344)
Q Consensus       823 ~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L  902 (1344)
                      .+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+.+..+..+++|++|
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            67777777777777777777777788888888888888888888888888888888888888888888888888999999


Q ss_pred             EecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCCCc-cccccCCcccccCc
Q psy16377        903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPI-RKEIDLNSTTCTEY  961 (1344)
Q Consensus       903 ~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~~~-~~~~~~~~~~C~~~  961 (1344)
                      +|++|||.|+|+ +.||..|++....   ......|..|....+. ...+..+...|.+.
T Consensus       132 ~L~~N~l~c~c~-l~~~~~~l~~~~~---~~~~~~C~~P~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          132 NLASNPFNCNCH-LAWFAEWLRKKSL---NGGAARCGAPSKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             ECTTCCBCCSGG-GHHHHHHHHHHCC---SGGGCBBCSSTTTTTSBGGGSCTTTCCCCCC
T ss_pred             EeCCCCccCcCc-chHHHHHHHHcCC---CCCCCCCCCChHHcCCChhhCcHhhcCcCCC
Confidence            999999999998 7999999987633   2346789988764432 11233444568754

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.87  E-value=1.8e-23  Score=213.38  Aligned_cols=134  Identities=21%  Similarity=0.330  Sum_probs=118.6

Q ss_pred             CCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCC
Q psy16377       1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTE 1103 (1344)
Q Consensus      1024 ~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~ 1103 (1344)
                      .+.||.+..+.++|+.||. .|++.||+++++|++|+++||+.||..+.                               
T Consensus        14 ~~~yDvFISys~~D~~fv~-~L~~~Le~~~~g~~~~~~~rd~~~G~~i~-------------------------------   61 (160)
T 2js7_A           14 PERFDAFICYCPSDIQFVQ-EMIRQLEQTNYRLKLCVSDRDVLPGTCVW-------------------------------   61 (160)
T ss_dssp             TTCEEEEEECCGGGHHHHH-HHHHHHHTSSSCCCCEESCCSSSSSCSCC-------------------------------
T ss_pred             CcceEEEEEcccccHHHHH-HHHHHHhcCCCceEEEEeCCCCCCCCcHH-------------------------------
Confidence            4567788888899999998 78999998678999999999999999999                               


Q ss_pred             ccchhHHHHHHH-hcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchhhHHHHhhhccEEEe
Q psy16377       1104 WSRSDFLIEAAE-ASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRW 1182 (1344)
Q Consensus      1104 w~~~~~i~~~i~-~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w 1182 (1344)
                          ++|.++|+ +||++|+|+|++|++|+||++|++.|++.+++++..+||+|+++++++     ++..+++..+|++|
T Consensus        62 ----~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~~-----~lp~ll~~~~~~~~  132 (160)
T 2js7_A           62 ----SIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMKK-----EFPSILRFITVCDY  132 (160)
T ss_dssp             ----CCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCCC-----CCCTTTSCSSCEET
T ss_pred             ----HHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccch-----hhHHHHhceEEEEC
Confidence                88999998 799999999999999999999999999998888888999999998853     23345677789999


Q ss_pred             C----chhhHHHhHhhcCCC
Q psy16377       1183 G----EKRFWERLRYAMPTC 1198 (1344)
Q Consensus      1183 ~----~~~Fw~~l~~~~p~~ 1198 (1344)
                      .    +++||+|||+|||.+
T Consensus       133 ~~~~~~~~FW~kL~~al~~~  152 (160)
T 2js7_A          133 TNPCTKSWFWTRLAKALSLP  152 (160)
T ss_dssp             TCTTTCSSHHHHHHHHHHSC
T ss_pred             CCCCCChHHHHHHHHHcCCc
Confidence            4    579999999999985

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=4.8e-21  Score=212.74  Aligned_cols=226  Identities=23%  Similarity=0.368  Sum_probs=150.6

Q ss_pred             CCCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeC
Q psy16377          1 MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN   80 (1344)
Q Consensus         1 ~~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~   80 (1344)
                      ++.||+.|.|...    ....|.|..  +..+| . +   + ..++.|++++|.+    ..+++..|.++++|++|+|++
T Consensus         1 ~~~cp~~C~C~~~----~~~~v~c~~--l~~ip-~-~---~-~~l~~L~l~~n~l----~~i~~~~~~~l~~L~~L~l~~   64 (239)
T 2xwt_C            1 MGCSSPPCECHQE----EDFRVTCKD--IQRIP-S-L---P-PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSI   64 (239)
T ss_dssp             --CCSSSCSEEEC----STTEEEECS--CSSCC-C-C---C-TTCCEEEEESCCC----SEECTTTTTTCTTCCEEEEEC
T ss_pred             CCCCCCCCeeCCC----CcceeEccC--ccccC-C-C---C-CcccEEEEeCCcc----eEECHHHccCCCCCcEEeCCC
Confidence            4679999999631    123688976  77776 2 2   2 4789999999998    457777899999999999999


Q ss_pred             Cc-CCccChhhhcCCCCCCEEEccc-ccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCC---EE
Q psy16377         81 CK-LVELPVDVFSGLRNLKRLTINT-RNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQ---TL  155 (1344)
Q Consensus        81 ~~-i~~l~~~~f~~l~~L~~L~Ls~-n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~---~L  155 (1344)
                      |+ ++.+++.+|.++++|++|++++ |.+.       .+.+..|.++++|++|++++|.++.+|.  |..+++|+   +|
T Consensus        65 n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-------~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L  135 (239)
T 2xwt_C           65 DVTLQQLESHSFYNLSKVTHIEIRNTRNLT-------YIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFIL  135 (239)
T ss_dssp             CSSCCEECTTTEESCTTCCEEEEEEETTCC-------EECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEE
T ss_pred             CCCcceeCHhHcCCCcCCcEEECCCCCCee-------EcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEE
Confidence            97 8999888888888888888875 5543       2345667788888888888888877765  66666666   67


Q ss_pred             ECCCC-CCCCCCCcchhhhccccccCCCCccccCCCCccc-EEECCCCCCCCCCCCccCCCCCCCCEEEccCCC-CCCcC
Q psy16377        156 NLSRN-SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLR-ILDLSHNKLRTLGDYSGITKFRRLQNLHLENNE-ISQIA  232 (1344)
Q Consensus       156 ~Ls~n-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~-i~~~~  232 (1344)
                      ++++| .++.++...|                 .++++|+ .|++++|+++.++.. .+.. ++|+.|++++|. ++++.
T Consensus       136 ~l~~N~~l~~i~~~~~-----------------~~l~~L~~~L~l~~n~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~  196 (239)
T 2xwt_C          136 EITDNPYMTSIPVNAF-----------------QGLCNETLTLKLYNNGFTSVQGY-AFNG-TKLDAVYLNKNKYLTVID  196 (239)
T ss_dssp             EEESCTTCCEECTTTT-----------------TTTBSSEEEEECCSCCCCEECTT-TTTT-CEEEEEECTTCTTCCEEC
T ss_pred             ECCCCcchhhcCcccc-----------------cchhcceeEEEcCCCCCcccCHh-hcCC-CCCCEEEcCCCCCcccCC
Confidence            77666 6665544333                 2255666 666666666655553 3333 556666666663 55555


Q ss_pred             hhhhcCC-CCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377        233 PNAFVAL-SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK  273 (1344)
Q Consensus       233 ~~~~~~l-~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~  273 (1344)
                      +..|.++ ++|++|++++|.++.+|..   .+++|+.|++.+
T Consensus       197 ~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~  235 (239)
T 2xwt_C          197 KDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN  235 (239)
T ss_dssp             TTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred             HHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence            5555555 5666666666666555543   234455555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=7.7e-21  Score=221.43  Aligned_cols=232  Identities=19%  Similarity=0.227  Sum_probs=120.7

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      ..+++.|+|++|.++.+|.  .+.++++|++|+|++|.+. ..|..++++++|++|+|++|.+..+|.. |..+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPD--QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCSSCCS--CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEE
T ss_pred             ccceeEEEccCCCchhcCh--hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEE
Confidence            3567777777777776665  3566777777777777776 3356666777777777777766666543 3555555555


Q ss_pred             EcccCccc-ccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377        270 YAQKNSLV-ELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN  348 (1344)
Q Consensus       270 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  348 (1344)
                      ++++|.+. .+|..+ ..      ..     +      ...|.++++|+.|++++|.++.+ +..+..+++|+.|++++|
T Consensus       156 ~L~~n~~~~~~p~~~-~~------~~-----~------~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          156 SIRACPELTELPEPL-AS------TD-----A------SGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             EEEEETTCCCCCSCS-EE------EC------------CCCEEESTTCCEEEEEEECCCCC-CGGGGGCTTCCEEEEESS
T ss_pred             ECCCCCCccccChhH-hh------cc-----c------hhhhccCCCCCEEECcCCCcCcc-hHhhcCCCCCCEEEccCC
Confidence            55554322 222111 10      00     0      11233445555555555555433 223444555555555555


Q ss_pred             CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccch
Q psy16377        349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPS  427 (1344)
Q Consensus       349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~  427 (1344)
                      .+..++. .|..+++|+.|++++|.+.+..                        +..|..+++|+.|++++|.+. .+|.
T Consensus       217 ~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~------------------------p~~~~~l~~L~~L~L~~n~~~~~~p~  271 (328)
T 4fcg_A          217 PLSALGP-AIHHLPKLEELDLRGCTALRNY------------------------PPIFGGRAPLKRLILKDCSNLLTLPL  271 (328)
T ss_dssp             CCCCCCG-GGGGCTTCCEEECTTCTTCCBC------------------------CCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred             CCCcCch-hhccCCCCCEEECcCCcchhhh------------------------HHHhcCCCCCCEEECCCCCchhhcch
Confidence            5544443 2444444555555444444444                        444444455555555554333 4444


Q ss_pred             hhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC
Q psy16377        428 ALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  469 (1344)
                      .+..+++|++|+|++|.+.+..|..+..+++|+.+++..+.+
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            555555555555555555555555555555555555554433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=8.9e-21  Score=220.89  Aligned_cols=235  Identities=21%  Similarity=0.251  Sum_probs=154.8

Q ss_pred             CCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEc
Q psy16377        216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL  295 (1344)
Q Consensus       216 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  295 (1344)
                      .+++.|+|++|.+..+ |..+.++++|++|+|++|.+..+|.. |..+++|++|++++|.+..+|.. |.++++|++|++
T Consensus        81 ~~l~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPAS-IASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSC-CSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhc-ChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHH-HhcCcCCCEEEC
Confidence            4566666666666543 44455566666666666665555432 34455555555555555544432 344455555555


Q ss_pred             cCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccc
Q psy16377        296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH  375 (1344)
Q Consensus       296 s~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~  375 (1344)
                      ++|.+                          .+..+..+..      ..+.         ..|.++++|+.|++++|.+.
T Consensus       158 ~~n~~--------------------------~~~~p~~~~~------~~~~---------~~~~~l~~L~~L~L~~n~l~  196 (328)
T 4fcg_A          158 RACPE--------------------------LTELPEPLAS------TDAS---------GEHQGLVNLQSLRLEWTGIR  196 (328)
T ss_dssp             EEETT--------------------------CCCCCSCSEE------EC-C---------CCEEESTTCCEEEEEEECCC
T ss_pred             CCCCC--------------------------ccccChhHhh------ccch---------hhhccCCCCCEEECcCCCcC
Confidence            54433                          3322222211      0000         12445566666666666666


Q ss_pred             ccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-ccchhhcCCCCccEEEccCCCCCccCcchhc
Q psy16377        376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQISKIENGSFK  454 (1344)
Q Consensus       376 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~  454 (1344)
                      .+ +..+..+++|+.|++++|.+.++.+ .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+.
T Consensus       197 ~l-p~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          197 SL-PASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             CC-CGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             cc-hHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence            33 3446667777777777777776644 5888999999999998776 7788999999999999999999998898999


Q ss_pred             CCCCCcEEEcccCCC-CCCCcccccCCCCccEEEcCCCcCcccc
Q psy16377        455 NLQQLTDLRLVDNNI-GNLSSGMLYELPSLEVLNLSKNKIHQIE  497 (1344)
Q Consensus       455 ~l~~L~~L~L~~n~l-~~l~~~~~~~l~~L~~L~Ls~n~i~~~~  497 (1344)
                      .+++|+.|++++|.+ +.+|. .+.++++|+.+.+..+.+..+.
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSCC--
T ss_pred             cCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHHHHh
Confidence            999999999999888 66665 5899999999999987655443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=4.2e-22  Score=230.72  Aligned_cols=248  Identities=19%  Similarity=0.119  Sum_probs=108.1

Q ss_pred             cCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccc-cccccc-------CCCceeEEEccCCcCCCCChhhh
Q psy16377        335 KDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI-TAHLFN-------GLYVLSKLTLSNNLLVNIDSKAF  406 (1344)
Q Consensus       335 ~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~-~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~  406 (1344)
                      ....+|+.|++++|.+ .++......   |+.|++++|.+... .+..+.       ++++|++|++++|.+.+..+..+
T Consensus        40 ~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3344555556666665 444322211   55555555555321 111111       34455555555555544333332


Q ss_pred             --cCCCCCcEEEccCCCCCccchhhcCC-----CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCC---C-cc
Q psy16377        407 --KNCSALKELDLSSNAIVEIPSALSEL-----PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL---S-SG  475 (1344)
Q Consensus       407 --~~l~~L~~L~Ls~n~l~~lp~~l~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l---~-~~  475 (1344)
                        ..+++|++|++++|.+..+|..+..+     ++|++|++++|++.++.+..|..+++|+.|++++|.+...   + ..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence              44455555555555554444433333     4455555555554444444444444444444444443210   1 11


Q ss_pred             cccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChh-hHhhcCCCCcEEEcCCCCCcccc---CCCcCCC
Q psy16377        476 MLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFD---YAMVPGN  551 (1344)
Q Consensus       476 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~l~~~~---~~~lp~~  551 (1344)
                      .+..+++|++|++++|+++.+..                     ++ ..+..+++|+.|++++|++....   ....+++
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSG---------------------VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHH---------------------HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             HhccCCCCCEEECCCCcCcchHH---------------------HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            11344444444444444442110                     11 12233444444444444444321   1111234


Q ss_pred             ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCc
Q psy16377        552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS  611 (1344)
Q Consensus       552 L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~  611 (1344)
                      |+.|++++|.++.++....    ++|+.|++++|++++++...-.++|++|++++|++++
T Consensus       255 L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          255 LNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             CCEEECCCCccChhhhhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence            5555555555554443211    3555555555555555332222455566666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=6.4e-22  Score=229.16  Aligned_cols=250  Identities=18%  Similarity=0.147  Sum_probs=130.5

Q ss_pred             hcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccc--cChhhh------cCCCCCCEEEccCCCCCCCCCCc
Q psy16377        236 FVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVE--LSRGLF------HKLEQLLVLDLSSNHLSSNHIDE  307 (1344)
Q Consensus       236 ~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~--l~~~~~------~~l~~L~~L~Ls~n~l~~~~i~~  307 (1344)
                      ++..++|+.|++++|.+ .+|..++..   |+.|++++|.+..  ++...+      .++++|++|++++|.+++.  .+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~  112 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT--AP  112 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC--CC
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch--hH
Confidence            34455666666666666 566554332   6666666666543  232221      1566777777777766542  12


Q ss_pred             ccc--cCCCcccEEEccCCCCCccccccccCC-----CcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc--
Q psy16377        308 TTF--IGLIRLIILNLSNNELTRIDAKTFKDL-----VFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT--  378 (1344)
Q Consensus       308 ~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~--  378 (1344)
                      ..+  ..+++|+.|++++|.++++ +..+..+     ++|++|++++|.+..+++..|..+++|+.|++++|++.+..  
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  191 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL  191 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence            222  5666666666666666665 4444444     56666666666666655555556666666666666544321  


Q ss_pred             cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc---h-hhcCCCCccEEEccCCCCCccCc-chh
Q psy16377        379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP---S-ALSELPFLKTLDLGENQISKIEN-GSF  453 (1344)
Q Consensus       379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp---~-~l~~l~~L~~L~Ls~n~i~~~~~-~~~  453 (1344)
                      +..+                      .+..+++|++|++++|.+..++   . .+..+++|++|++++|.+.+..+ ..+
T Consensus       192 ~~~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          192 ISAL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             HHHS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             HHHH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            1111                      1133444444444444444222   1 12344555555555555554432 233


Q ss_pred             cCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCC
Q psy16377        454 KNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTD  519 (1344)
Q Consensus       454 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  519 (1344)
                      ..+++|+.|++++|.++.++...+   ++|++|++++|++++++ . +..+++|+.|++++|.+++
T Consensus       250 ~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p-~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-S-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCC-C-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCCh-h-HhhCCCCCEEeccCCCCCC
Confidence            445555555555555555544322   45555666666555552 2 5555556666666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=7.8e-21  Score=215.38  Aligned_cols=154  Identities=30%  Similarity=0.517  Sum_probs=142.8

Q ss_pred             CccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecc
Q psy16377        778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQ  857 (1344)
Q Consensus       778 ~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~  857 (1344)
                      .++.|++++|.++.++...|.++++|+.|++++|+++.+.+..|.++++|++|+|++|+++.+++..|..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            36778888888888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccC
Q psy16377        858 ENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVK  931 (1344)
Q Consensus       858 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~  931 (1344)
                      +|+|+.+++..|..+++|++|+|++|+++.+++..+..+++|+.|++++|||.|+|+.+.++..|.......+.
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBB
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHhCCCccc
Confidence            99999999999999999999999999999999998999999999999999999999988999888866544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=3.4e-20  Score=210.69  Aligned_cols=223  Identities=22%  Similarity=0.320  Sum_probs=162.6

Q ss_pred             cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEccc
Q psy16377        194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQK  273 (1344)
Q Consensus       194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~  273 (1344)
                      ..++.++..++.+|..  +.  ++|++|++++|.++++.+..|.++++|++|++++|.+..+++..|.++++|++|++++
T Consensus        10 ~~~~c~~~~l~~ip~~--l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           10 ITYQCMELNFYKIPDN--LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TEEECTTSCCSSCCSS--SC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ceEEecCCCccccCCC--CC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            3566677777777763  32  5788999999998888777888889999999999988888888888888888888888


Q ss_pred             CcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccc-cccccCCCcccEEEecCCCccc
Q psy16377        274 NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID-AKTFKDLVFLQRLDLRNNSIGY  352 (1344)
Q Consensus       274 n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~  352 (1344)
                      |.+..+++..|.++++|++|++++|.+.+  +....+..+++|+.|++++|.+..+. +..|..+++|+.|++++|.+..
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CccCccChhhhcCCccccEEECCCCCccc--cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            88888887778888888888888888876  44556777888888888888877753 5667777788888888887777


Q ss_pred             cchhhhcCCCCcc----EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC
Q psy16377        353 IEDNAFLSLYNLH----TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV  423 (1344)
Q Consensus       353 i~~~~f~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  423 (1344)
                      ++...|..+++|+    .|++++|.+.++.+..+.. .+|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus       164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            7665665555555    6666666666655544433 25666666666666555555555555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.84  E-value=4.1e-20  Score=209.19  Aligned_cols=202  Identities=30%  Similarity=0.486  Sum_probs=144.4

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      ..+++.+++++++++.+|..  +.  ++|+.|+|++|.+.++.+..|.++++|++|+|++|.++.++...|..+++|++|
T Consensus        15 ~~~~~~l~~~~~~l~~ip~~--~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           15 NNNKNSVDCSSKKLTAIPSN--IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             ETTTTEEECTTSCCSSCCSC--CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCCEEEccCCCCCccCCC--CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            35678999999999998863  33  679999999999998887789999999999999999999988888888888888


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++++|.+..+++..|..+++|++|++++|.++.  +....|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  168 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS--LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ  168 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCe--eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc
Confidence            888888888887777788888888888877765  445556666666666666666666655555556666666666666


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCc
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNL  397 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  397 (1344)
                      +..+++..|..+++|+.|++++|.+.++.+..|..+++|+.|++++|.
T Consensus       169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          169 LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            555555555555555555555555554444444444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=3.6e-21  Score=236.54  Aligned_cols=235  Identities=23%  Similarity=0.225  Sum_probs=156.3

Q ss_pred             CCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEc
Q psy16377        216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDL  295 (1344)
Q Consensus       216 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  295 (1344)
                      ++|+.|+|++|.++++.|..|.++++|++|+|++|.+..+++  |..+++|++|+|++|.++.+++     .++|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence            456666666666666656666666666666666666655444  5666666666666666666553     267777777


Q ss_pred             cCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhc-CCCCccEEEccCCcc
Q psy16377        296 SSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL-SLYNLHTIYLSENRI  374 (1344)
Q Consensus       296 s~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~-~l~~L~~L~Ls~n~l  374 (1344)
                      ++|.+++  +..   ..+++|+.|++++|.++++.+..|..+++|+.|+|++|.+..+.+..|. .+++|+.|+|++|.+
T Consensus       107 ~~N~l~~--~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          107 ANNNISR--VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CSSCCCC--EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             cCCcCCC--CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence            7777665  222   2356777777777777777777777777777788877777766555554 577777788877777


Q ss_pred             cccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCC-ccCcchh
Q psy16377        375 HHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS-KIENGSF  453 (1344)
Q Consensus       375 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~-~~~~~~~  453 (1344)
                      .+..+  +..+++|+.|+|++|.++++++. |..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. +..+..+
T Consensus       182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~  258 (487)
T 3oja_A          182 YDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (487)
T ss_dssp             CEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred             ccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence            76643  23467777777777777776554 66677777777777777777777777777777777777766 3334445


Q ss_pred             cCCCCCcEEEcc
Q psy16377        454 KNLQQLTDLRLV  465 (1344)
Q Consensus       454 ~~l~~L~~L~L~  465 (1344)
                      ..++.|+.|++.
T Consensus       259 ~~l~~L~~l~~~  270 (487)
T 3oja_A          259 SKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhCCCCcEEecc
Confidence            555555555543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.4e-20  Score=231.41  Aligned_cols=215  Identities=24%  Similarity=0.267  Sum_probs=121.1

Q ss_pred             CCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEE
Q psy16377        265 DISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLD  344 (1344)
Q Consensus       265 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  344 (1344)
                      +|++|+|++|.+..+++..|..+++|+.|+|++|.+++  .  ..+..+++|+.|+|++|.++++++     .++|+.|+
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~--~~l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--T--LDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--E--EECTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--C--cccccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            44444444444444444444444444455554444433  1  114444555555555554443322     14556666


Q ss_pred             ecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhc-CCCCCcEEEccCCCCC
Q psy16377        345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK-NCSALKELDLSSNAIV  423 (1344)
Q Consensus       345 Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~  423 (1344)
                      +++|.+..++..   .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|+|++|.++
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            666665555432   245566666666666666666666666666666666666665555554 5666777777777666


Q ss_pred             ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCc
Q psy16377        424 EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIH  494 (1344)
Q Consensus       424 ~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~  494 (1344)
                      .+|. ...+++|++|+|++|.++++++. |..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus       183 ~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred             cccc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence            5543 23466666667666666665553 55666666666666666655543 455566666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=7.3e-20  Score=209.13  Aligned_cols=203  Identities=23%  Similarity=0.306  Sum_probs=157.1

Q ss_pred             ccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCc
Q psy16377        334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK  413 (1344)
Q Consensus       334 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  413 (1344)
                      +.++++++.++++++.++.++...   .++++.|++++|.+.++.+..|.++++|+.|++++|.+..+.+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            344555666666666666555432   24566666666666666666666666666777766666655432  5678888


Q ss_pred             EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377        414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI  493 (1344)
Q Consensus       414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i  493 (1344)
                      .|++++|.+..+|..+..+++|++|++++|+++++.+..|.++++|+.|++++|.++.++.+.|..+++|+.|++++|++
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence            88888888888888888888999999999999888888888899999999999999888888888889999999999999


Q ss_pred             cccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377        494 HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       494 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      +.++...|..+++|+.|+|++|.++.+|..+..+.+|+.|++++|.+.
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            888888888888899999999988888877777778888888877653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.83  E-value=3.7e-20  Score=195.23  Aligned_cols=167  Identities=34%  Similarity=0.626  Sum_probs=129.1

Q ss_pred             CCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcC
Q psy16377        744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNG  823 (1344)
Q Consensus       744 cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~  823 (1344)
                      ||..|+|.      ...++|++.++..+|..++..++.|++++|+++.                        +.+..|.+
T Consensus         1 Cp~~C~C~------~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~------------------------~~~~~~~~   50 (177)
T 2o6r_A            1 CPSRCSCS------GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS------------------------LPHGVFDK   50 (177)
T ss_dssp             CCTTCEEE------TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC------------------------CCTTTTTT
T ss_pred             CcCCCEeC------CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE------------------------eCHHHhcC
Confidence            89999994      2468888888888887665555555555555544                        44455566


Q ss_pred             CCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEE
Q psy16377        824 LSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVY  903 (1344)
Q Consensus       824 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~  903 (1344)
                      +++|++|+|++|+++.+++..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            66677777777777777777777788888888888888888888888888899999999999988888888889999999


Q ss_pred             ecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377        904 LGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE  942 (1344)
Q Consensus       904 l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~  942 (1344)
                      +++|||.|+|+.+.+|..|+.+....+  ...+.|..++
T Consensus       131 l~~N~~~~~~~~l~~l~~~~~~~~~~~--~~~~~C~~~~  167 (177)
T 2o6r_A          131 LHTNPWDCSCPRIDYLSRWLNKNSQKE--QGSAKCSGSG  167 (177)
T ss_dssp             CCSSCBCCCHHHHHHHHHHHHHTGGGE--ESCCBBTTTC
T ss_pred             ecCCCeeccCccHHHHHHHHhhCcccc--ccCcEeCCCC
Confidence            999999999998899999998765433  3678887754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=2.9e-20  Score=218.89  Aligned_cols=248  Identities=23%  Similarity=0.306  Sum_probs=184.0

Q ss_pred             CCCC-CcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          4 VPEN-CSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         4 ~~~~-c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      ||.. |.|..       +.|.|..++|+.+| .++    +.+++.|+|++|.+    .+|++++|.++++|++|+|++|+
T Consensus         2 Cp~~~C~C~~-------~~v~C~~~~Lt~iP-~~l----~~~l~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X            2 CHHRICHCSN-------RVFLCQESKVTEIP-SDL----PRNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             CCCSSSEEET-------TEEEEESTTCCSCC-TTC----CTTCSEEEEESCCC----SEECTTSSTTCTTCCEEEEECCT
T ss_pred             CCCCccEeeC-------CEEEecCCCCCccC-cCc----CCCCCEEEccCCcC----CCcCHHHHcCCCCCCEEECcCCC
Confidence            7754 88852       36899999999998 544    25799999999999    56888899999999999999999


Q ss_pred             C-CccChhhhcCCCCCCEEEc-ccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCC-
Q psy16377         83 L-VELPVDVFSGLRNLKRLTI-NTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSR-  159 (1344)
Q Consensus        83 i-~~l~~~~f~~l~~L~~L~L-s~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~-  159 (1344)
                      + +.++.++|.++++|+.+.+ .+|++.       .+.|..|.++++|++|++++|.+..+++..+....++..|++.+ 
T Consensus        66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~-------~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           66 VLEVIEADVFSNLPKLHEIRIEKANNLL-------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             TCCEECTTSBCSCTTCCEEEEEEETTCC-------EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             CCCccChhHhhcchhhhhhhcccCCccc-------ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence            8 5588888999999887544 334432       35577889999999999999999988887777777888888855 


Q ss_pred             CCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccC-CCCCCcChhhhcC
Q psy16377        160 NSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVA  238 (1344)
Q Consensus       160 n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~  238 (1344)
                      +.+..++...|..                ....++.|+|++|+++.++..  .....+|+.|++.+ |.++.+.+++|.+
T Consensus       139 ~~i~~l~~~~f~~----------------~~~~l~~L~L~~N~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~  200 (350)
T 4ay9_X          139 INIHTIERNSFVG----------------LSFESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLEELPNDVFHG  200 (350)
T ss_dssp             TTCCEECTTSSTT----------------SBSSCEEEECCSSCCCEECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTT
T ss_pred             cccccccccchhh----------------cchhhhhhccccccccCCChh--hccccchhHHhhccCCcccCCCHHHhcc
Confidence            5577666554421                134678888888888888764  33456788888864 6677776667888


Q ss_pred             CCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccC-cccccChhhhcCCCCCCEEEccC
Q psy16377        239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKN-SLVELSRGLFHKLEQLLVLDLSS  297 (1344)
Q Consensus       239 l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~  297 (1344)
                      +++|++|+|++|+++.+|...|.+   |+.|.+.++ .++.+|.  +.++++|+.+++.+
T Consensus       201 l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          201 ASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             EECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred             CcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence            888888888888888888766544   444444333 4556653  46677777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.82  E-value=4.8e-20  Score=192.74  Aligned_cols=117  Identities=32%  Similarity=0.502  Sum_probs=89.8

Q ss_pred             cceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecC
Q psy16377        827 LQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGN  906 (1344)
Q Consensus       827 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~  906 (1344)
                      |++|+|++|+|+.+.+..|.++++|++|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+.|+|++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            44555555555555555666666777777777777777777777778888888888888888887788888999999999


Q ss_pred             CcccCCChhhHHHHHHHhhcCCcc-----CCCCCeeecCCCC
Q psy16377        907 NPFSCSCATLQELQTWIIDNSNKV-----KDGLDISCVIDES  943 (1344)
Q Consensus       907 Np~~C~C~~l~~l~~w~~~~~~~v-----~~~~~~~C~~~~~  943 (1344)
                      |||.|+|..+.||..|++++...+     .+...++|..++.
T Consensus       112 N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~~~  153 (170)
T 3g39_A          112 NPWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGTNT  153 (170)
T ss_dssp             SCBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-CC
T ss_pred             CCCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCCCc
Confidence            999999987899999999887777     4567899987643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=7.2e-20  Score=207.41  Aligned_cols=183  Identities=28%  Similarity=0.388  Sum_probs=91.4

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +++|++|++++|.++.++   .+..+++|++|++++|.++++.+..|.++++|++|++++|.+..+++..|..+++|++|
T Consensus        62 l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            344444444444444432   24444444444444444444444444444555555555555444444444444555555


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++++|.++.+++..|..+++|+.|++++|.+++  +....+..+++|+.|++++|.+.++.+..|..+++|+.|++++|.
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            555554444444444455555555555555543  333344455555555555555555555555555556666665554


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccC
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNG  384 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~  384 (1344)
                      +.       ..+++|+.+++..|.+.+..+..++.
T Consensus       217 ~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~  244 (272)
T 3rfs_A          217 WD-------CTCPGIRYLSEWINKHSGVVRNSAGS  244 (272)
T ss_dssp             BC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred             cc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence            43       12445566666666666555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.81  E-value=1.5e-19  Score=189.56  Aligned_cols=148  Identities=34%  Similarity=0.633  Sum_probs=109.8

Q ss_pred             CCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccch
Q psy16377        741 EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQT  820 (1344)
Q Consensus       741 ~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~  820 (1344)
                      .++||..|+|.      ...++|+++++..+|..++.                                           
T Consensus         3 ~~~CP~~C~C~------~~~l~~~~n~l~~iP~~~~~-------------------------------------------   33 (174)
T 2r9u_A            3 SAGCPSQCSCD------QTLVNCQNIRLASVPAGIPT-------------------------------------------   33 (174)
T ss_dssp             CCSSCTTSEEC------SSEEECCSSCCSSCCSCCCT-------------------------------------------
T ss_pred             CCCCCCCCEEC------CcEEEeCCCCCCccCCCcCC-------------------------------------------
Confidence            46799999993      24677777777776654432                                           


Q ss_pred             hcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCc
Q psy16377        821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLR  900 (1344)
Q Consensus       821 f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~  900 (1344)
                           +|++|+|++|+|+.+.+..|.++++|+.|+|++|+|+.+++..|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus        34 -----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  108 (174)
T 2r9u_A           34 -----DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT  108 (174)
T ss_dssp             -----TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             -----CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence                 344455555555555555666666777777777777777777777788888888888888888887788889999


Q ss_pred             EEEecCCcccCCChhhHHHHHHHhhcCCccC--------CCCCeeecCCC
Q psy16377        901 KVYLGNNPFSCSCATLQELQTWIIDNSNKVK--------DGLDISCVIDE  942 (1344)
Q Consensus       901 ~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~--------~~~~~~C~~~~  942 (1344)
                      .|+|++|||.|+|..+.||..|++.+...+.        +...+.|..++
T Consensus       109 ~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  158 (174)
T 2r9u_A          109 HIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGTN  158 (174)
T ss_dssp             EEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTTC
T ss_pred             EEEeCCCCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCCC
Confidence            9999999999999878999999988766664        55667787653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.5e-19  Score=200.66  Aligned_cols=196  Identities=23%  Similarity=0.320  Sum_probs=131.5

Q ss_pred             cccEEEecCCCccccchhhhcCCCCccEEEccCCc-ccccccccccCCCceeEEEccC-CcCCCCChhhhcCCCCCcEEE
Q psy16377        339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENR-IHHITAHLFNGLYVLSKLTLSN-NLLVNIDSKAFKNCSALKELD  416 (1344)
Q Consensus       339 ~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~  416 (1344)
                      +|+.|++++|.++.++...|..+++|+.|++++|+ +..+.+..|.++++|+.|++++ |.+..+.+..|.++++|+.|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666666665556666666666666664 5555555566666666666666 666666666666677777777


Q ss_pred             ccCCCCCccchhhcCCCCcc---EEEccCC-CCCccCcchhcCCCCCc-EEEcccCCCCCCCcccccCCCCccEEEcCCC
Q psy16377        417 LSSNAIVEIPSALSELPFLK---TLDLGEN-QISKIENGSFKNLQQLT-DLRLVDNNIGNLSSGMLYELPSLEVLNLSKN  491 (1344)
Q Consensus       417 Ls~n~l~~lp~~l~~l~~L~---~L~Ls~n-~i~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n  491 (1344)
                      +++|.+..+|. +..+++|+   +|++++| .+..+.+..|.++++|+ .|++++|.++.++...|.. ++|+.|++++|
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n  189 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN  189 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence            77777776665 66666666   7777777 77777766677777777 7777777777776665655 67777777777


Q ss_pred             c-CcccccccccCC-CccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377        492 K-IHQIEIGTFEKN-KRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN  538 (1344)
Q Consensus       492 ~-i~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  538 (1344)
                      + ++.+.+..|..+ ++|+.|++++|.++.+|..  .+++|+.|+++++
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            4 777766667766 6777777777777666543  4566666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=1.4e-20  Score=222.67  Aligned_cols=251  Identities=20%  Similarity=0.279  Sum_probs=124.3

Q ss_pred             EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCc----ccccCCC-cccEEEccCCCCCccccccccCC-----C
Q psy16377        269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDE----TTFIGLI-RLIILNLSNNELTRIDAKTFKDL-----V  338 (1344)
Q Consensus       269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l-----~  338 (1344)
                      +.++.|.+....+.++...++|++|+|++|.++.  ...    ..+..++ +|++|+|++|.++...+..+..+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG--SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCCh--HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4556666665555555555556666666666654  223    3444555 56666666665555444444332     4


Q ss_pred             cccEEEecCCCccccchhh----hcCC-CCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcC-CCCC
Q psy16377        339 FLQRLDLRNNSIGYIEDNA----FLSL-YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN-CSAL  412 (1344)
Q Consensus       339 ~L~~L~Ls~n~l~~i~~~~----f~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L  412 (1344)
                      +|++|+|++|.++......    +..+ ++|+.|++++|.+.+.....+..                    .+.. .++|
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L  140 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASI  140 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTC
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCce
Confidence            5555555555554433322    2222 44444444444444433322211                    1122 2355


Q ss_pred             cEEEccCCCCC-----ccchhhcCCC-CccEEEccCCCCCccCcchh----cCC-CCCcEEEcccCCCCC-----CCccc
Q psy16377        413 KELDLSSNAIV-----EIPSALSELP-FLKTLDLGENQISKIENGSF----KNL-QQLTDLRLVDNNIGN-----LSSGM  476 (1344)
Q Consensus       413 ~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~n~i~~~~~~~~----~~l-~~L~~L~L~~n~l~~-----l~~~~  476 (1344)
                      ++|+|++|.++     .++..+..++ +|++|+|++|++++..+..+    ..+ ++|+.|+|++|.++.     ++...
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l  220 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF  220 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence            55555555554     2333444443 56666666665555544322    223 356666666665544     22211


Q ss_pred             ccCCCCccEEEcCCCcCccccc----ccccCCCccceEeccccCCCC--------hhhHhhcCCCCcEEEcCCCCCc
Q psy16377        477 LYELPSLEVLNLSKNKIHQIEI----GTFEKNKRLAAIRLDSNFLTD--------INGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       477 ~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      ....++|++|++++|.++....    ..+..+++|+.|++++|.+..        ++..+..+++|+.|++++|++.
T Consensus       221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            1113466666666666655433    223445666666666666332        2234455666666666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.78  E-value=2.3e-19  Score=212.23  Aligned_cols=255  Identities=18%  Similarity=0.236  Sum_probs=149.9

Q ss_pred             EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCCh----hhhcCCC-CCcEEEcccCcccccChhhhcCC-----CC
Q psy16377        220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE----GLFSSCR-DISEIYAQKNSLVELSRGLFHKL-----EQ  289 (1344)
Q Consensus       220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~f~~l~-~L~~L~L~~n~l~~l~~~~~~~l-----~~  289 (1344)
                      .++++.|.+++..|..+...++|++|+|++|.+...+.    ..|..++ +|++|+|++|.++......|..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677888888777766666668888888888887776    5666676 77777777777776655544443     66


Q ss_pred             CCEEEccCCCCCCCCCCccc----ccCC-CcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcC-CCC
Q psy16377        290 LLVLDLSSNHLSSNHIDETT----FIGL-IRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS-LYN  363 (1344)
Q Consensus       290 L~~L~Ls~n~l~~~~i~~~~----~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~-l~~  363 (1344)
                      |++|+|++|.+++  .....    +..+ ++|+.|++++|.++......+..                    .+.. .++
T Consensus        82 L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~  139 (362)
T 3goz_A           82 VTSLNLSGNFLSY--KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPAS  139 (362)
T ss_dssp             CCEEECCSSCGGG--SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTT
T ss_pred             ccEEECcCCcCCh--HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCc
Confidence            6666666666554  22221    2222 44555555554444433322211                    1222 235


Q ss_pred             ccEEEccCCccccccc----ccccCCC-ceeEEEccCCcCCCCChhh----hcCC-CCCcEEEccCCCCCc-----cchh
Q psy16377        364 LHTIYLSENRIHHITA----HLFNGLY-VLSKLTLSNNLLVNIDSKA----FKNC-SALKELDLSSNAIVE-----IPSA  428 (1344)
Q Consensus       364 L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~----~~~l-~~L~~L~Ls~n~l~~-----lp~~  428 (1344)
                      |++|++++|.+.+...    ..+..++ +|+.|+|++|.+.+..+..    +..+ ++|+.|+|++|.+..     ++..
T Consensus       140 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~  219 (362)
T 3goz_A          140 ITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI  219 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             eeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence            6666666665553222    2223333 6666666666666555433    3334 477777777777765     5555


Q ss_pred             hcC-CCCccEEEccCCCCCccCcc----hhcCCCCCcEEEcccCCCCCCCcc-------cccCCCCccEEEcCCCcCccc
Q psy16377        429 LSE-LPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDNNIGNLSSG-------MLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       429 l~~-l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~-------~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      +.. .++|++|+|++|.+.+....    .+..+++|+.|++++|.+..+...       .+..+++|+.|++++|++...
T Consensus       220 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          220 FSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            655 34788888888877776542    234566777777777765444432       244555666666666665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=1.1e-18  Score=201.25  Aligned_cols=242  Identities=22%  Similarity=0.316  Sum_probs=163.3

Q ss_pred             EccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCC
Q psy16377        392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN  471 (1344)
Q Consensus       392 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~  471 (1344)
                      .+..+.+.+..  .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.++.+  +..+++|+.|++++|.++.
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~   99 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN   99 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC
Confidence            34444444432  2445678999999999998887 68889999999999999988766  8889999999999999987


Q ss_pred             CCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCC
Q psy16377        472 LSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN  551 (1344)
Q Consensus       472 l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~  551 (1344)
                      ++  .+..+++|++|++++|+++.+.  .+..+++|+.|++++|.++.++. +..+++|+.|++++|++..++.      
T Consensus       100 ~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~------  168 (308)
T 1h6u_A          100 VS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP------  168 (308)
T ss_dssp             CG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG------
T ss_pred             ch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh------
Confidence            75  3788899999999999888765  37788888889998888888765 7778888888888777765432      


Q ss_pred             ccEEEcCCCcCCCCCccccccCCCcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCC
Q psy16377        552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN  631 (1344)
Q Consensus       552 L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N  631 (1344)
                                         +..+++|+.|++++|+++++.+..-.++|+.|++++|++.+..+  +..+++|+.|++++|
T Consensus       169 -------------------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          169 -------------------LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             -------------------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred             -------------------hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence                               22334555555555555554443333455556666665555542  566667777777777


Q ss_pred             CCcccccccccccCC------CCCCCCCeEEcCCCcccccccCcc
Q psy16377        632 DITKLDLTALRLKPV------PQNKTLPEFYLGGNPFDCDCSMDW  670 (1344)
Q Consensus       632 ~l~~l~~~~l~~~~~------~~~~~l~~l~l~~Np~~C~c~~~~  670 (1344)
                      .++..+.........      .....+....++.|...|.+...|
T Consensus       228 ~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~is~~g~y~~~~~~w  272 (308)
T 1h6u_A          228 TITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW  272 (308)
T ss_dssp             EEECCCEECCSEEEEECCCBCTTSCBCCCSEEGGGCEEETTEEEE
T ss_pred             eeecCCeeecccEeccceeECCCCCCCCCCccccCCEEeCCceeE
Confidence            666544322210000      011123334566666666666666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1e-18  Score=205.64  Aligned_cols=238  Identities=24%  Similarity=0.328  Sum_probs=151.2

Q ss_pred             cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCC-CCChhhhcCCCCCcE-EEc
Q psy16377        194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLV-SLPEGLFSSCRDISE-IYA  271 (1344)
Q Consensus       194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~f~~l~~L~~-L~L  271 (1344)
                      ++++.++++++.+|..  +  .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+. .++..+|.++++|.+ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~--l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSD--L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTT--C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcC--c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            5788888899998864  4  367899999999999887788999999999999999874 477888888888775 556


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccC-CCCCccccccccCCC-cccEEEecCCC
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSN-NELTRIDAKTFKDLV-FLQRLDLRNNS  349 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~  349 (1344)
                      ..|++..+++..|..+++|+.|++++|.+..  +....+....++..|++.+ +.+..+....|..+. .++.|++++|.
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSS--CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cCCcccccCchhhhhcccccccccccccccc--CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            6688888888888888888888888888765  4444455555566666644 345555444444442 34555555555


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccC-CcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN-NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA  428 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~  428 (1344)
                      ++.++...|                        . ..+|+.|++.+ |.+..+.+.+|.++++|+.|++++|+++.+|..
T Consensus       166 i~~i~~~~f------------------------~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          166 IQEIHNSAF------------------------N-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             CCEECTTSS------------------------T-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             ccCCChhhc------------------------c-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            555544433                        2 23444555442 444444445555555555555555555555532


Q ss_pred             hcCCCCccEEEccCCC-CCccCcchhcCCCCCcEEEccc
Q psy16377        429 LSELPFLKTLDLGENQ-ISKIENGSFKNLQQLTDLRLVD  466 (1344)
Q Consensus       429 l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~  466 (1344)
                        .+.+|+.|.+.++. +..++  .+..+++|+.+++.+
T Consensus       221 --~~~~L~~L~~l~~~~l~~lP--~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          221 --GLENLKKLRARSTYNLKKLP--TLEKLVALMEASLTY  255 (350)
T ss_dssp             --SCTTCCEEECTTCTTCCCCC--CTTTCCSCCEEECSC
T ss_pred             --hhccchHhhhccCCCcCcCC--CchhCcChhhCcCCC
Confidence              23344444444332 22222  245566666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.76  E-value=5.3e-18  Score=195.61  Aligned_cols=83  Identities=20%  Similarity=0.320  Sum_probs=41.1

Q ss_pred             CCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCE
Q psy16377        213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLV  292 (1344)
Q Consensus       213 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~  292 (1344)
                      ..+++|+.|++++|.+..+ + .+..+++|++|++++|.+..++.  |..+++|++|++++|.+..++  .+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence            3455566666666655554 2 35555555555555555555444  444444555555444444432  1334444444


Q ss_pred             EEccCCCCC
Q psy16377        293 LDLSSNHLS  301 (1344)
Q Consensus       293 L~Ls~n~l~  301 (1344)
                      |++++|.++
T Consensus       112 L~l~~n~l~  120 (308)
T 1h6u_A          112 LDLTSTQIT  120 (308)
T ss_dssp             EECTTSCCC
T ss_pred             EECCCCCCC
Confidence            444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.76  E-value=1.1e-17  Score=186.89  Aligned_cols=181  Identities=29%  Similarity=0.393  Sum_probs=154.5

Q ss_pred             CcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEE
Q psy16377        191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIY  270 (1344)
Q Consensus       191 ~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~  270 (1344)
                      ...+.++++++.++.+|..  +.  ++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+++..|..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~--~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSG--IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSC--CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCCC--CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            5678999999999999874  43  6899999999999999888999999999999999999999998899999999999


Q ss_pred             cccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        271 AQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       271 L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +++|.++.+++..|..+++|++|+|++|.+++  +....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCC--cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            99999999988888889999999999998886  5566677888888888888888887777777888888888888888


Q ss_pred             cccchhhhcCCCCccEEEccCCccccc
Q psy16377        351 GYIEDNAFLSLYNLHTIYLSENRIHHI  377 (1344)
Q Consensus       351 ~~i~~~~f~~l~~L~~L~Ls~n~l~~~  377 (1344)
                      ..+++..|..+++|+.|++++|++...
T Consensus       168 ~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          168 QSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            877777777777788888877776543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=5.9e-19  Score=204.05  Aligned_cols=131  Identities=27%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             CCcccEEECCCCCCCC---CCCCccCCCCCCCCEEEccCCCCCCcChh---hhcCCCCccEEEeeCCCCCCCChhhhcCC
Q psy16377        190 GMDLRILDLSHNKLRT---LGDYSGITKFRRLQNLHLENNEISQIAPN---AFVALSSLRILNISSNHLVSLPEGLFSSC  263 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~---l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l  263 (1344)
                      +++|++|+|++|++.+   ++....+..+++|++|+|++|.++.+.+.   .+.++++|++|+|++|.+..+.+..+..+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            4455555555554432   22111234455555555555555433111   13445555555555555554421112222


Q ss_pred             ---CCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC
Q psy16377        264 ---RDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT  327 (1344)
Q Consensus       264 ---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~  327 (1344)
                         ++|++|++++|.++.+|..++   ++|+.|+|++|.+++  +  ..+..+++|+.|++++|.++
T Consensus       248 ~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~--~--~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNR--A--PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCS--C--CCTTSCCCCSCEECSSTTTS
T ss_pred             cCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCC--C--chhhhCCCccEEECcCCCCC
Confidence               455555555555555544331   455556666555554  2  12445555666666665554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.73  E-value=5.6e-17  Score=194.04  Aligned_cols=315  Identities=21%  Similarity=0.263  Sum_probs=172.0

Q ss_pred             cCCCcccccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCC
Q psy16377         60 SSITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIK  139 (1344)
Q Consensus        60 ~~l~~~~f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~  139 (1344)
                      .+|+..+|.+|++|+++.|.. .++.|+..+|.+|.+|+.++|..+        ...+...+|.++.+|+.+.+..+ +.
T Consensus        60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--------l~~I~~~aF~~c~~L~~i~~p~~-l~  129 (394)
T 4fs7_A           60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--------VKMIGRCTFSGCYALKSILLPLM-LK  129 (394)
T ss_dssp             EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--------CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred             eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--------ceEccchhhcccccchhhcccCc-ee
Confidence            457778888888888888864 488888888888888888888422        22344566777777777776643 66


Q ss_pred             ccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCC
Q psy16377        140 SISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQ  219 (1344)
Q Consensus       140 ~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~  219 (1344)
                      .+...+|.++..+.......  +..+...+|                 .++.+|+.+.+..+ +..++.. .|.++.+|+
T Consensus       130 ~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF-----------------~~c~~L~~i~l~~~-~~~I~~~-~F~~c~~L~  188 (394)
T 4fs7_A          130 SIGVEAFKGCDFKEITIPEG--VTVIGDEAF-----------------ATCESLEYVSLPDS-METLHNG-LFSGCGKLK  188 (394)
T ss_dssp             EECTTTTTTCCCSEEECCTT--CCEECTTTT-----------------TTCTTCCEEECCTT-CCEECTT-TTTTCTTCC
T ss_pred             eecceeeecccccccccCcc--ccccchhhh-----------------cccCCCcEEecCCc-cceeccc-cccCCCCce
Confidence            66666676665433332221  222333333                 23566666666543 3445444 566666666


Q ss_pred             EEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCC
Q psy16377        220 NLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH  299 (1344)
Q Consensus       220 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~  299 (1344)
                      .+.+..+ +..+...+|.++..|+.+.+..+. ..+.... ....+|+.+.+.. .+..+....|..+..|+.+.+..+.
T Consensus       189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~-~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~  264 (394)
T 4fs7_A          189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFA-LSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNK  264 (394)
T ss_dssp             BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTT-TTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTT
T ss_pred             EEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhh-cccCCCceEEECC-CceecccccccccccceeEEcCCCc
Confidence            6666544 444555566666666666555442 2222222 2334555555543 2344455555556666666555443


Q ss_pred             CCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCccccccc
Q psy16377        300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITA  379 (1344)
Q Consensus       300 l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~  379 (1344)
                      ..   +....|..+..++.+.+....   +....|..+.+|+.+.+..+ +..++..+|.++.+|+.+.|..+ ++.+..
T Consensus       265 ~~---i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~  336 (394)
T 4fs7_A          265 LR---IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK  336 (394)
T ss_dssp             CE---ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred             ce---eeccccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence            22   334455555555555544332   23334555555555555433 55555555555555555555422 444444


Q ss_pred             ccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEcc
Q psy16377        380 HLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS  418 (1344)
Q Consensus       380 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  418 (1344)
                      .+|.++.+|+.+.+..+ +..+...+|.+|++|+.+++.
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            44555555555555433 444444444444444444443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=8.8e-19  Score=209.31  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=44.2

Q ss_pred             cCCCCCCCCEEEccCCCCCCcChh----hhcCCCCccEEEeeCCCCCCC----Chhh------hcCCCCCcEEEcccCcc
Q psy16377        211 GITKFRRLQNLHLENNEISQIAPN----AFVALSSLRILNISSNHLVSL----PEGL------FSSCRDISEIYAQKNSL  276 (1344)
Q Consensus       211 ~l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~l----~~~~------f~~l~~L~~L~L~~n~l  276 (1344)
                      .+..+++|+.|+|++|.+....+.    .+..+++|++|+|++|.+..+    |..+      |..+++|++|+|++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            355566666666666666554332    244566666666666544432    2211      23444455555544444


Q ss_pred             cc----cChhhhcCCCCCCEEEccCCCC
Q psy16377        277 VE----LSRGLFHKLEQLLVLDLSSNHL  300 (1344)
Q Consensus       277 ~~----l~~~~~~~l~~L~~L~Ls~n~l  300 (1344)
                      ..    ..+..+..+++|++|+|++|.+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            43    1112234444555555554444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=1e-18  Score=208.83  Aligned_cols=136  Identities=25%  Similarity=0.329  Sum_probs=72.7

Q ss_pred             CCccEEEccCCccccc-cc---ccccCCCceeEEEccCCcCCC-----CChhhhcCCCCCcEEEccCCCC-----Cccch
Q psy16377        362 YNLHTIYLSENRIHHI-TA---HLFNGLYVLSKLTLSNNLLVN-----IDSKAFKNCSALKELDLSSNAI-----VEIPS  427 (1344)
Q Consensus       362 ~~L~~L~Ls~n~l~~~-~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l-----~~lp~  427 (1344)
                      ++|+.|++++|++... .+   ..+..+++|+.|++++|.+..     +.+..+..+++|+.|+|++|.+     ..+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            5566666666655421 11   234445556666666655542     1222455566666666666666     34555


Q ss_pred             hhcCCCCccEEEccCCCCCccC----cchhc--CCCCCcEEEcccCCCCC-----CCcccccCCCCccEEEcCCCcCccc
Q psy16377        428 ALSELPFLKTLDLGENQISKIE----NGSFK--NLQQLTDLRLVDNNIGN-----LSSGMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       428 ~l~~l~~L~~L~Ls~n~i~~~~----~~~~~--~l~~L~~L~L~~n~l~~-----l~~~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      .+..+++|++|+|++|.+++..    +..+.  .+++|+.|+|++|.++.     ++...+.++++|+.|++++|+++..
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            6666666666666666665542    22332  25556666666666544     4433334455666666666655544


Q ss_pred             c
Q psy16377        497 E  497 (1344)
Q Consensus       497 ~  497 (1344)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.72  E-value=1.3e-16  Score=189.90  Aligned_cols=266  Identities=14%  Similarity=0.289  Sum_probs=154.7

Q ss_pred             ccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhh
Q psy16377         67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVF  146 (1344)
Q Consensus        67 f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~  146 (1344)
                      +..+..++.+.+.. .++.|+..+|.++ +|+.+.|..+        ...+...+|.++ +|+.++|.. .++.+...+|
T Consensus       109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--------i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF  176 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--------LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIF  176 (401)
T ss_dssp             EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--------CCEECTTTTTTC-CCCEEECCT-TCCEECSSTT
T ss_pred             EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC--------ccEECHHhcCCC-CceEEEeCC-CccEehHHHh
Confidence            33456677777654 4667777777775 5777777422        223445566664 577777765 5667777777


Q ss_pred             cCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC
Q psy16377        147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN  226 (1344)
Q Consensus       147 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n  226 (1344)
                      .+|++|+.++|..|.++.++..+|.                  +.+|+.+.|..+ ++.++.. +|.++++|+.+++..+
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF~------------------~~~L~~l~lp~~-l~~I~~~-aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTFV------------------YAGIEEVLLPVT-LKEIGSQ-AFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTTT------------------TCCCSEEECCTT-CCEECTT-TTTTCTTCCCEECCTT
T ss_pred             hCcccCCeeecCCCcceEechhhEe------------------ecccCEEEeCCc-hheehhh-HhhCCCCCCEEecCCC
Confidence            7777777777777777766666553                  356666777633 6666655 6666777777776653


Q ss_pred             CCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc-----ccChhhhcCCCCCCEEEccCCCCC
Q psy16377        227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV-----ELSRGLFHKLEQLLVLDLSSNHLS  301 (1344)
Q Consensus       227 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~Ls~n~l~  301 (1344)
                       ++.+...+|.+ .+|+.+.|. +.++.++..+|.+|++|+.+.+.++.+.     .++...|.+|++|+.++|.. .++
T Consensus       237 -l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          237 -VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             -CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             -ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence             55555566666 566666663 3456666666666666666666655443     45555555555555555552 233


Q ss_pred             CCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCC-CccEEEccCC
Q psy16377        302 SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLY-NLHTIYLSEN  372 (1344)
Q Consensus       302 ~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~-~L~~L~Ls~n  372 (1344)
                      .  +...+|.+|.+|+.+.|..+ ++.+...+|.++ +|+.+++.+|.+..+....|.+++ ++..|++..+
T Consensus       313 ~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          313 I--LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             E--ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             E--EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence            2  44445555555555555332 444545555555 555555555555544444444442 3444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.72  E-value=1.1e-17  Score=193.23  Aligned_cols=203  Identities=17%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             CCCCCEEEccCCCCCCCCCCcccc--cCCCcccEEEccCCCCCcccc----ccccCCCcccEEEecCCCccccchhhhcC
Q psy16377        287 LEQLLVLDLSSNHLSSNHIDETTF--IGLIRLIILNLSNNELTRIDA----KTFKDLVFLQRLDLRNNSIGYIEDNAFLS  360 (1344)
Q Consensus       287 l~~L~~L~Ls~n~l~~~~i~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~  360 (1344)
                      +++|++|++++|.+.+  ..+..+  ..+++|++|++++|.+....+    ..+..+++|+.|++++|.+..++...|..
T Consensus        90 ~~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           90 YSRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HSCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             cCceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            3457777777776654  223333  556666666666666554222    22233445555555555554444444444


Q ss_pred             CCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCC-hhhhcCCCCCcEEEccCCCCCccchh----hcCCCCc
Q psy16377        361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID-SKAFKNCSALKELDLSSNAIVEIPSA----LSELPFL  435 (1344)
Q Consensus       361 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L  435 (1344)
                      +++|+.|++++|++.+...                     +. ...+..+++|++|++++|.++.++..    +..+++|
T Consensus       168 l~~L~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L  226 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP  226 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCC
T ss_pred             CCCCCEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCC
Confidence            4555555555544332100                     00 01123445555555555555544331    3445555


Q ss_pred             cEEEccCCCCCccCcchhcCC---CCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377        436 KTLDLGENQISKIENGSFKNL---QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL  512 (1344)
Q Consensus       436 ~~L~Ls~n~i~~~~~~~~~~l---~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  512 (1344)
                      ++|+|++|.+.+..+..+..+   ++|+.|++++|.++.++...+   ++|++|++++|++++++.  +..+++|+.|++
T Consensus       227 ~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L  301 (310)
T 4glp_A          227 HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTL  301 (310)
T ss_dssp             SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCEEC
T ss_pred             CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEEEC
Confidence            555555555555544333333   355555555555555544321   455555555555544321  333444444444


Q ss_pred             cccCC
Q psy16377        513 DSNFL  517 (1344)
Q Consensus       513 ~~n~l  517 (1344)
                      ++|.+
T Consensus       302 ~~N~l  306 (310)
T 4glp_A          302 DGNPF  306 (310)
T ss_dssp             SSTTT
T ss_pred             cCCCC
Confidence            44444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=7.4e-18  Score=197.23  Aligned_cols=156  Identities=21%  Similarity=0.187  Sum_probs=65.1

Q ss_pred             CCCcccEEEccCCCCCcc-ccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCC-ccccc-ccccccCCCce
Q psy16377        312 GLIRLIILNLSNNELTRI-DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN-RIHHI-TAHLFNGLYVL  388 (1344)
Q Consensus       312 ~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L  388 (1344)
                      .+++|+.|++++|.+... .+..+..+++|++|++++|.+.......+..+++|+.|++++| .+++. .+..+.++++|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L  170 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  170 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence            344444444444444332 2233444444444444444444333333444444444444444 33321 22223344444


Q ss_pred             eEEEccCC-cCCCC-ChhhhcCCC-CCcEEEccCCC--CC--ccchhhcCCCCccEEEccCCC-CCccCcchhcCCCCCc
Q psy16377        389 SKLTLSNN-LLVNI-DSKAFKNCS-ALKELDLSSNA--IV--EIPSALSELPFLKTLDLGENQ-ISKIENGSFKNLQQLT  460 (1344)
Q Consensus       389 ~~L~Ls~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~  460 (1344)
                      +.|++++| .+++. .+..+..++ +|++|++++|.  ++  .++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~  250 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  250 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence            44444444 33322 123334444 44444444442  21  233344444444444444444 3333333344444444


Q ss_pred             EEEcccC
Q psy16377        461 DLRLVDN  467 (1344)
Q Consensus       461 ~L~L~~n  467 (1344)
                      .|++++|
T Consensus       251 ~L~l~~~  257 (336)
T 2ast_B          251 HLSLSRC  257 (336)
T ss_dssp             EEECTTC
T ss_pred             EeeCCCC
Confidence            4444444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=3.7e-17  Score=177.07  Aligned_cols=190  Identities=24%  Similarity=0.358  Sum_probs=148.9

Q ss_pred             CCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcC
Q psy16377          4 VPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKL   83 (1344)
Q Consensus         4 ~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i   83 (1344)
                      ||..|.|.       |..+.|....+..+| ..+    ..+++.|++++|.+    ..+++..|.++++|++|+|++|++
T Consensus         1 Cp~~C~C~-------~~~v~c~~~~l~~~p-~~~----~~~l~~L~l~~n~l----~~~~~~~~~~l~~L~~L~l~~n~l   64 (208)
T 2o6s_A            1 CPSRCSCS-------GTTVECYSQGRTSVP-TGI----PAQTTYLDLETNSL----KSLPNGVFDELTSLTQLYLGGNKL   64 (208)
T ss_dssp             CCTTCEEE-------TTEEECCSSCCSSCC-SCC----CTTCSEEECCSSCC----CCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CcCCCEEC-------CCEEEecCCCccCCC-CCC----CCCCcEEEcCCCcc----CcCChhhhcccccCcEEECCCCcc
Confidence            78889883       236899999998888 333    24789999999998    457777889999999999999999


Q ss_pred             CccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCC
Q psy16377         84 VELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIR  163 (1344)
Q Consensus        84 ~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~  163 (1344)
                      +.+++..|.++++|++|+|++|.+.       ...+..|.++++|++|+|++|.++.+++..|..+++|++|++++|.++
T Consensus        65 ~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           65 QSLPNGVFNKLTSLTYLNLSTNQLQ-------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CccChhhcCCCCCcCEEECCCCcCC-------ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            9998888899999999999876653       234555788889999999999998888887888888888888888888


Q ss_pred             CCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCC
Q psy16377        164 DIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSS  241 (1344)
Q Consensus       164 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  241 (1344)
                      .++...+                 ..+++|++|++++|.+.        +.+++|+.|+++.|.+++..|..++.++.
T Consensus       138 ~~~~~~~-----------------~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          138 SVPDGVF-----------------DRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCCTTTT-----------------TTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             eeCHHHh-----------------ccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            7665433                 23678888888888543        34567788888888888777777766544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=8e-18  Score=196.91  Aligned_cols=130  Identities=15%  Similarity=0.071  Sum_probs=50.7

Q ss_pred             CCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccccc-ChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccE
Q psy16377        240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVEL-SRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLII  318 (1344)
Q Consensus       240 ~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~  318 (1344)
                      ++++.|++++|.+...++.. ..+++|++|++++|.+... .+..+..+++|++|++++|.+++  .....+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH--HHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH--HHHHHHhcCCCCCE
Confidence            34444444444444333322 2344444444444443321 22233444444444444444332  11223333444444


Q ss_pred             EEccCC-CCCcc-ccccccCCCcccEEEecCC-Ccccc-chhhhcCCC-CccEEEccCC
Q psy16377        319 LNLSNN-ELTRI-DAKTFKDLVFLQRLDLRNN-SIGYI-EDNAFLSLY-NLHTIYLSEN  372 (1344)
Q Consensus       319 L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~i-~~~~f~~l~-~L~~L~Ls~n  372 (1344)
                      |++++| .++.. .+..+..+++|++|++++| .++.. ....+..++ +|+.|++++|
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            444444 23221 1222334444444444444 44321 112233444 4444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=5.1e-17  Score=201.01  Aligned_cols=215  Identities=21%  Similarity=0.289  Sum_probs=123.8

Q ss_pred             CCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377        411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK  490 (1344)
Q Consensus       411 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  490 (1344)
                      +|+.|++++|.++.+|..+  +++|++|+|++|.++.++    ..+++|+.|++++|.++.++.  +.+  +|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            7777777777777777655  266777777777777554    335667777777776666654  332  666666666


Q ss_pred             CcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCcccc
Q psy16377        491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYE  570 (1344)
Q Consensus       491 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~  570 (1344)
                      |+++.++.    .+++|+.|++++|.++.+|.   .+++|+.                      |+|++|.|+.++.   
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~----------------------L~Ls~N~L~~lp~---  177 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEV----------------------LSVRNNQLTFLPE---  177 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCE----------------------EECCSSCCSCCCC---
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCE----------------------EECCCCCCCCcch---
Confidence            66665443    34555555555555555443   3444444                      4555554444443   


Q ss_pred             ccCCCcccEEECCCCcccccccccccCcc-------cEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccc
Q psy16377        571 IKDGLSIKNLDASHNRILEISELSIPNSV-------EVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL  643 (1344)
Q Consensus       571 l~~~~~L~~L~Ls~N~l~~~~~~~~~~sL-------~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~  643 (1344)
                      +.  ++|+.|++++|+|+.++.  ++.+|       +.|+|++|+|+.+ |..+..+++|+.|+|++|.|++..+..+..
T Consensus       178 l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          178 LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            11  456666666666665544  44455       7777777777754 445556888888888888887765554431


Q ss_pred             c-CCCCC-CCCCeEEc-------CCCcccccccCccccc
Q psy16377        644 K-PVPQN-KTLPEFYL-------GGNPFDCDCSMDWLPI  673 (1344)
Q Consensus       644 ~-~~~~~-~~l~~l~l-------~~Np~~C~c~~~~l~~  673 (1344)
                      . ..+.. .....+++       ..+| .|+|...|+..
T Consensus       253 l~~~~~~~~~~~~~~l~~~~~~~~~~p-~~~~~~~Wl~~  290 (571)
T 3cvr_A          253 QTAQPDYHGPRIYFSMSDGQQNTLHRP-LADAVTAWFPE  290 (571)
T ss_dssp             HHHSCC---CEEECCC----------C-CSHHHHTTCC-
T ss_pred             hhcCccccCCeeEEeeccccccccccc-chhhHHHHhhh
Confidence            1 11100 00011122       2356 89999999965

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=2.1e-16  Score=189.14  Aligned_cols=325  Identities=18%  Similarity=0.311  Sum_probs=244.1

Q ss_pred             CCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcE
Q psy16377        189 GGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISE  268 (1344)
Q Consensus       189 ~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~  268 (1344)
                      ++.+|+.+.|.. .++.++.. +|.+|++|+.++|..+ +..+...+|.++.+|+.+.+..+ +..+...+|.++..+..
T Consensus        69 ~c~~L~~i~lp~-~i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~  144 (394)
T 4fs7_A           69 GCRKVTEIKIPS-TVREIGEF-AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI  144 (394)
T ss_dssp             TCTTEEEEECCT-TCCEECTT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred             CCCCceEEEeCC-CccCcchh-HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence            478899999975 48888877 8999999999999754 77777788889999988877654 67778888888765443


Q ss_pred             EEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC
Q psy16377        269 IYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN  348 (1344)
Q Consensus       269 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  348 (1344)
                      ...  ..+..+....|.++++|+.+.+..+...   +....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+..+
T Consensus       145 ~~~--~~~~~i~~~aF~~c~~L~~i~l~~~~~~---I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          145 TIP--EGVTVIGDEAFATCESLEYVSLPDSMET---LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             ECC--TTCCEECTTTTTTCTTCCEEECCTTCCE---ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccC--ccccccchhhhcccCCCcEEecCCccce---eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            332  2345566777888899999988765432   56778888888888888765 77777788888888888887765


Q ss_pred             CccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchh
Q psy16377        349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA  428 (1344)
Q Consensus       349 ~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~  428 (1344)
                      . ..+....| ....|+.+.+.. .+..+....|.++..|+.+.+..+ ...+....|..+..++.+.+....+.  ...
T Consensus       219 ~-~~i~~~~~-~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~  292 (394)
T 4fs7_A          219 L-YYLGDFAL-SKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKT  292 (394)
T ss_dssp             C-CEECTTTT-TTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTT
T ss_pred             c-eEeehhhc-ccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--ccc
Confidence            3 33444333 456788888754 345566677888888888888765 44566677888888888877665432  235


Q ss_pred             hcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccc
Q psy16377        429 LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLA  508 (1344)
Q Consensus       429 l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  508 (1344)
                      +..+.+|+.+.+.++ +..+...+|.+|.+|+.++|.+ .++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            678888999988764 7778888899999999998864 478888888999999999998776 8888888899999999


Q ss_pred             eEeccccCCCChhhHhhcCCCCcEE
Q psy16377        509 AIRLDSNFLTDINGVFTYLAQLLWL  533 (1344)
Q Consensus       509 ~L~L~~n~l~~l~~~~~~l~~L~~L  533 (1344)
                      .+.+..+ ++.+...|.++++|+.+
T Consensus       370 ~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          370 KVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             EEEECCC-CEEhhheecCCCCCcEE
Confidence            9988754 44555667778777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.70  E-value=3.7e-16  Score=186.06  Aligned_cols=260  Identities=13%  Similarity=0.239  Sum_probs=125.9

Q ss_pred             CCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCC
Q psy16377        126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT  205 (1344)
Q Consensus       126 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~  205 (1344)
                      ..++.+.+.+ .++.|+..+|.++ +|+.+.+..+ ++.++..+|.                  ..+|+.+.+.. .++.
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~------------------~~~L~~i~lp~-~l~~  170 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFF------------------NSTVQEIVFPS-TLEQ  170 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTT------------------TCCCCEEECCT-TCCE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcC------------------CCCceEEEeCC-CccE
Confidence            4555555553 3555555555554 4666665544 5555554443                  12455555553 4555


Q ss_pred             CCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhc
Q psy16377        206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFH  285 (1344)
Q Consensus       206 l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~  285 (1344)
                      ++.. +|.+|++|+.++|..|.++.+...+|. +.+|+.+.|..+ +..++..+|.+|++|+.+.+..+ ++.++...|.
T Consensus       171 I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~  246 (401)
T 4fdw_A          171 LKED-IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR  246 (401)
T ss_dssp             ECSS-TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred             ehHH-HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc
Confidence            5544 555555555555555555555544554 355555555532 55555555555555555555542 4455555554


Q ss_pred             CCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCC-----ccccccccCCCcccEEEecCCCccccchhhhcC
Q psy16377        286 KLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELT-----RIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS  360 (1344)
Q Consensus       286 ~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~  360 (1344)
                      + .+|+.+.+.. .++.  +...+|.+|.+|+.+.+.++.+.     .+...+|.+|++|+.+.|. +.+..++..+|.+
T Consensus       247 ~-~~L~~i~lp~-~i~~--I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~  321 (401)
T 4fdw_A          247 E-SGITTVKLPN-GVTN--IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG  321 (401)
T ss_dssp             T-CCCSEEEEET-TCCE--ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT
T ss_pred             c-CCccEEEeCC-CccE--EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC
Confidence            4 4455555532 2222  33444455555555554444332     3444445555555555554 2344444445555


Q ss_pred             CCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCC-CCcEEEcc
Q psy16377        361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS-ALKELDLS  418 (1344)
Q Consensus       361 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls  418 (1344)
                      +.+|+.+.|..+ +..+...+|.++ +|+.+++.+|.+..+....|.+++ +++.|.+.
T Consensus       322 c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp  378 (401)
T 4fdw_A          322 NRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP  378 (401)
T ss_dssp             CCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred             CCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence            555555544322 344444444444 444444444444444333443332 33444433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=2.6e-17  Score=191.90  Aligned_cols=218  Identities=20%  Similarity=0.231  Sum_probs=121.1

Q ss_pred             CCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCC----CccccchhhhcCCC
Q psy16377        287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN----SIGYIEDNAFLSLY  362 (1344)
Q Consensus       287 l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n----~l~~i~~~~f~~l~  362 (1344)
                      +++|+.|+|.+ .++.  +...+|.+|++|+.|++++|.+..+.+.+|.++.++..+.+..+    ....+...+|.++.
T Consensus       100 ~~~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~  176 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE  176 (329)
T ss_dssp             CTTCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred             cCCCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence            44444444444 3332  33444444444444444444444444444444444444433331    12233334444444


Q ss_pred             Ccc-EEEccCCcccccccccc---cCCCceeEEEccCCcCCCCChhhh-cCCCCCcEEEccCCCCCccch-hhcCCCCcc
Q psy16377        363 NLH-TIYLSENRIHHITAHLF---NGLYVLSKLTLSNNLLVNIDSKAF-KNCSALKELDLSSNAIVEIPS-ALSELPFLK  436 (1344)
Q Consensus       363 ~L~-~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~  436 (1344)
                      .|+ .+.+....  .+....+   -...++..+.+.++ +.......+ ..|++|+.|+|++|.++.+|. +|.++++|+
T Consensus       177 ~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~  253 (329)
T 3sb4_A          177 PLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL  253 (329)
T ss_dssp             CCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred             ccceeEEecCCC--cHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence            444 33332221  1111111   12334445554443 111111112 236777777777777777764 567777777


Q ss_pred             EEEccCCCCCccCcchhcCCCCCc-EEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377        437 TLDLGENQISKIENGSFKNLQQLT-DLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL  512 (1344)
Q Consensus       437 ~L~Ls~n~i~~~~~~~~~~l~~L~-~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  512 (1344)
                      .|+|.+| +..+...+|.+|.+|+ .+++.+ .++.|+.++|.+|++|+.|++++|.++.+...+|.++++|+.|+.
T Consensus       254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7777776 7777777788888887 888877 677777777888888888888788888888778888888877753

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.68  E-value=6.3e-18  Score=169.32  Aligned_cols=130  Identities=21%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             CCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCC
Q psy16377       1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTE 1103 (1344)
Q Consensus      1024 ~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~ 1103 (1344)
                      ++.||.+..+.++|++|| ..|++.||+..++|++|+++||+.||..+.                               
T Consensus         8 ~k~YDvFISy~~~D~~~v-~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~-------------------------------   55 (146)
T 3ub2_A            8 SKDYDVCVCHSEEDLVAA-QDLVSYLEGSTASLRCFLQLRDATPGGAIV-------------------------------   55 (146)
T ss_dssp             SSSEEEEEECCGGGHHHH-HHHHHHHHC------------------CCC-------------------------------
T ss_pred             CCcceEEEeCChhhHHHH-HHHHHHHhCcCCCeEEEEECccccccccHH-------------------------------
Confidence            456788888778999998 589999997557999999999999999999                               


Q ss_pred             ccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccchhhHHHHhhhccEEEeC
Q psy16377       1104 WSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESDIELKPYLKSCMKIRWG 1183 (1344)
Q Consensus      1104 w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~~~l~~~l~~~~~l~w~ 1183 (1344)
                          +.|.++|++|||+|+|+|++|++++||++|++.|++.++... .++|+|+ +++++..+|++    |+..+|+.+.
T Consensus        56 ----~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~-~~vIpv~-~~v~~~~lp~~----Lr~~~~id~~  125 (146)
T 3ub2_A           56 ----SELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAE-GCTIPLL-SGLSRAAYPPE----LRFMYYVDGR  125 (146)
T ss_dssp             ----EEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSS-SEEEEEE-CSCCGGGSCGG----GGGSCCEETT
T ss_pred             ----HHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcC-CcEEEEE-cCCChhhCCHH----HhCeeeeecc
Confidence                899999999999999999999999999999999999886543 4888665 56665555555    4566788885


Q ss_pred             c-hhhHHHhHhhc
Q psy16377       1184 E-KRFWERLRYAM 1195 (1344)
Q Consensus      1184 ~-~~Fw~~l~~~~ 1195 (1344)
                      + ..-+.+++.++
T Consensus       126 ~~d~~f~~l~~~v  138 (146)
T 3ub2_A          126 GPDGGFRQVKEAV  138 (146)
T ss_dssp             SGGGGHHHHHHHH
T ss_pred             ChHhhHHHHHHHH
Confidence            4 35667776554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=4.2e-17  Score=190.11  Aligned_cols=218  Identities=17%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCC----CCCCCChhhhcCCCC
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN----HLVSLPEGLFSSCRD  265 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n----~l~~l~~~~f~~l~~  265 (1344)
                      +++|+.|+|+. .++.++.. +|.+|++|+.|++++|.+..+.+.+|.++.++..+.+..+    ....+....|.++..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~-aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDA-AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTT-TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHH-HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            56666666666 56666555 5666666666666666666665666666555555544432    223344444555555


Q ss_pred             Cc-EEEcccCcccccChhhhcC---CCCCCEEEccCCCCCCCCCCcccc-cCCCcccEEEccCCCCCccccccccCCCcc
Q psy16377        266 IS-EIYAQKNSLVELSRGLFHK---LEQLLVLDLSSNHLSSNHIDETTF-IGLIRLIILNLSNNELTRIDAKTFKDLVFL  340 (1344)
Q Consensus       266 L~-~L~L~~n~l~~l~~~~~~~---l~~L~~L~Ls~n~l~~~~i~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  340 (1344)
                      |+ .+.+...  ..++...+..   ..++..+.+.++-..   .....+ ..+++|+.|+|++|.++.++..+|.+|.+|
T Consensus       178 L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~---~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          178 LETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN---ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             CEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH---HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             cceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH---HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            55 3333321  2222222221   334444444433111   001111 124556666666666666666666666666


Q ss_pred             cEEEecCCCccccchhhhcCCCCcc-EEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEE
Q psy16377        341 QRLDLRNNSIGYIEDNAFLSLYNLH-TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELD  416 (1344)
Q Consensus       341 ~~L~Ls~n~l~~i~~~~f~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  416 (1344)
                      +.|+|.+| +..++..+|.++++|+ .+.+.+ .+..+...+|.++++|+.|++++|.+..+...+|.+|++|+.++
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            66666555 5556666666666665 666655 55555555555555566555555555555555555555555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.67  E-value=2.1e-16  Score=185.75  Aligned_cols=116  Identities=27%  Similarity=0.402  Sum_probs=88.5

Q ss_pred             CCccceeeccc-ccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEE
Q psy16377        824 LSSLQVLHLEN-NLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV  902 (1344)
Q Consensus       824 l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L  902 (1344)
                      +++|+.|+|++ |+|+.+++..|.+|++|+.|+|++|+|+++++..|..+++|+.|+|++|+|+.+++..+..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34556666664 666666666677777777777777777777777777777777777778888777777776666 9999


Q ss_pred             EecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCC
Q psy16377        903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDE  942 (1344)
Q Consensus       903 ~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~  942 (1344)
                      +|.+|+|.|+|+ +.||..|++.....+ +...+.|..++
T Consensus       109 ~l~~N~~~c~c~-l~~~~~~~~~~~~~l-~~~~~~C~~~~  146 (347)
T 2ifg_A          109 VLSGNPLHCSCA-LRWLQRWEEEGLGGV-PEQKLQCHGQG  146 (347)
T ss_dssp             ECCSSCCCCCGG-GHHHHHHHHTTCSSC-GGGCCCCSSSS
T ss_pred             EeeCCCccCCCc-cHHHHHHHHhCcccc-cccCCCCCCCh
Confidence            999999999999 799999998765443 56789998876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.65  E-value=5.1e-16  Score=192.12  Aligned_cols=189  Identities=23%  Similarity=0.289  Sum_probs=96.2

Q ss_pred             CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEE
Q psy16377        241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILN  320 (1344)
Q Consensus       241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~  320 (1344)
                      +|+.|++++|.++++|..++   ++|+.|+|++|.++.+|    ..+++|+.|++++|.+++  ++.  +..  +|+.|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~--l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE--LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC--CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch--hhc--CCCEEE
Confidence            34444444444444443321   33444444444444433    123444444444444443  221  222  444444


Q ss_pred             ccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCC
Q psy16377        321 LSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVN  400 (1344)
Q Consensus       321 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  400 (1344)
                      +++|.+++++.    .+++|+.|++++|.++.++.    .+++|+.|+|++|.+++++.  |.  ++|+.|+|++|.++.
T Consensus       127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          127 VDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES  194 (571)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred             CCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc
Confidence            54444444332    23455555555555554443    34455555555555555333  32  455555555555554


Q ss_pred             CChhhhcC-----CCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCC
Q psy16377        401 IDSKAFKN-----CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNL  456 (1344)
Q Consensus       401 ~~~~~~~~-----l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l  456 (1344)
                      ++.  |..     ...|+.|+|++|.++.+|..+..+++|+.|+|++|.+++..+..|..+
T Consensus       195 lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          195 LPA--VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCC--CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhh--HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            433  322     122377888888888777777777888888888887777666655543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=8e-16  Score=175.71  Aligned_cols=170  Identities=28%  Similarity=0.404  Sum_probs=78.5

Q ss_pred             CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEE
Q psy16377        336 DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL  415 (1344)
Q Consensus       336 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  415 (1344)
                      .+++|+.|++++|.+..++.  +..+++|+.|++++|.+.++.+  +..+++|+.|+++                     
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~---------------------   98 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD---------------------   98 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC---------------------
T ss_pred             hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC---------------------
Confidence            34455555555555544432  4444455555555544444333  3444444444444                     


Q ss_pred             EccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377        416 DLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       416 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                         +|.+..++. +..+++|++|++++|.+.++  ..+..+++|+.|++++|.++.++  .+..+++|+.|++++|+++.
T Consensus        99 ---~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A           99 ---ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             ---SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCC
T ss_pred             ---CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcch--hhccCCCCCEEEccCCcccc
Confidence               444444332 44444444444444444443  23444444444444444444431  24444555555555554444


Q ss_pred             cccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCc
Q psy16377        496 IEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       496 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      +.+  +..+++|+.|++++|.+++++. +..+++|+.|++++|++.
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             chh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence            432  4444455555555555544432 444555555555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=1e-15  Score=174.83  Aligned_cols=172  Identities=29%  Similarity=0.411  Sum_probs=95.8

Q ss_pred             cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377        311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK  390 (1344)
Q Consensus       311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  390 (1344)
                      ..+++|+.|++++|.+..+.  .+..+++|+.|++++|.+..+++  +..+++|+.|++++|.+.++..  +..+++|+.
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            34455555555555555442  24555556666666665555544  5556666666666666555332  455555556


Q ss_pred             EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCC
Q psy16377        391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG  470 (1344)
Q Consensus       391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  470 (1344)
                      |++++|.+.++  ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.++.+  +..+++|+.|++++|.++
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            66655555554  2355556666666666666555 345556666666666666555543  555556666666666555


Q ss_pred             CCCcccccCCCCccEEEcCCCcCcc
Q psy16377        471 NLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       471 ~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                      .++.  +..+++|+.|++++|++..
T Consensus       192 ~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          192 DLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             CChh--hccCCCCCEEECcCCcccC
Confidence            5532  4555566666666555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.2e-15  Score=160.54  Aligned_cols=113  Identities=24%  Similarity=0.402  Sum_probs=98.7

Q ss_pred             CccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccc
Q psy16377        757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL  836 (1344)
Q Consensus       757 ~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~  836 (1344)
                      +...++.+++.+..+|...                     |.++++|+.|++++|+++.+.+..|.++++|++|+|++|+
T Consensus        29 ~l~~L~l~~n~l~~~~~~~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGV---------------------FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTT---------------------TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEeCCCcccEeCHHH---------------------hcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            4557888888888777532                     6677899999999999999988889999999999999999


Q ss_pred             ccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccc
Q psy16377        837 ITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA  890 (1344)
Q Consensus       837 l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  890 (1344)
                      |+.+++..|..+++|+.|+|++|+|+.+++..|..+++|++|+|++|.++...+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999999889999999999999999999999889999999999999999886443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=1.4e-15  Score=179.48  Aligned_cols=177  Identities=26%  Similarity=0.338  Sum_probs=137.4

Q ss_pred             ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhc-CCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377        193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFV-ALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  271 (1344)
                      -+.+++++++++.+|..  +.  ..++.|+|++|.++++.+..|. ++++|++|+|++|.+..+++..|.++++|++|+|
T Consensus        20 ~~~l~c~~~~l~~iP~~--~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQS--LP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TTEEECCSSCCSSCCSS--CC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCCCCcCccCcc--CC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence            46899999999998863  32  4689999999999998888787 8999999999999999988888888899999999


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccc---cCCCcccEEEecCC
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTF---KDLVFLQRLDLRNN  348 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n  348 (1344)
                      ++|.+..+++..|.++++|+.|+|++|.+..  +....|.++++|+.|+|++|.++.++...|   ..+++|+.|+|++|
T Consensus        96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             CCCcCCcCCHHHhCCCcCCCEEECCCCcccE--ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            9998888888888888888888888888876  556677777788888888887777766655   44667777777777


Q ss_pred             CccccchhhhcCCCCc--cEEEccCCccc
Q psy16377        349 SIGYIEDNAFLSLYNL--HTIYLSENRIH  375 (1344)
Q Consensus       349 ~l~~i~~~~f~~l~~L--~~L~Ls~n~l~  375 (1344)
                      .+..++...|..++.+  +.|+|++|++.
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            7776666666655552  55666665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.62  E-value=2.1e-14  Score=171.73  Aligned_cols=337  Identities=19%  Similarity=0.302  Sum_probs=211.1

Q ss_pred             cCCCcccccCCC-CCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCC
Q psy16377         60 SSITTKSFQNIY-SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNI  138 (1344)
Q Consensus        60 ~~l~~~~f~~l~-~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i  138 (1344)
                      .+|+..+|.+++ .|+.+.|..+ ++.|...+|.+|.+|+.+.+..+.    +.....+...+|.++.+|+.+.+..+ +
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~----p~~l~~Ig~~aF~~c~~L~~i~~~~~-~  125 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK----PSCVKKIGRQAFMFCSELTDIPILDS-V  125 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC----CCCCCEECTTTTTTCTTCCBCGGGTT-C
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC----CCeeeEechhhchhcccceeeccCCc-c
Confidence            457888999985 5999999754 889999999999999999996542    11222345677888999998888754 7


Q ss_pred             CccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCC
Q psy16377        139 KSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRL  218 (1344)
Q Consensus       139 ~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L  218 (1344)
                      +.+...+|..+.+|+.+.+.. .+..++..+|.                 ++..|+.+.+..+ ++.+... +|.. .+|
T Consensus       126 ~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~-----------------~c~~L~~i~~~~~-~~~I~~~-aF~~-~~l  184 (394)
T 4gt6_A          126 TEIDSEAFHHCEELDTVTIPE-GVTSVADGMFS-----------------YCYSLHTVTLPDS-VTAIEER-AFTG-TAL  184 (394)
T ss_dssp             SEECTTTTTTCTTCCEEECCT-TCCEECTTTTT-----------------TCTTCCEEECCTT-CCEECTT-TTTT-CCC
T ss_pred             ceehhhhhhhhcccccccccc-eeeeeccccee-----------------cccccccccccce-eeEeccc-cccc-cce
Confidence            888888899999999999874 35555555543                 3677888888654 6666655 5654 568


Q ss_pred             CEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCC
Q psy16377        219 QNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN  298 (1344)
Q Consensus       219 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n  298 (1344)
                      +.+.+..+ +..+...+|.++.+|+...........+....|............           +.....+..+.+...
T Consensus       185 ~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ip~~  252 (394)
T 4gt6_A          185 TQIHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR-----------YPSQREDPAFKIPNG  252 (394)
T ss_dssp             SEEEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE-----------CCTTCCCSEEECCTT
T ss_pred             eEEEECCc-ccccccchhhhccccceecccccccccccceeecccccccccccc-----------cccccccceEEcCCc
Confidence            88887653 444556677778888877776665544443333222111111100           111223333333221


Q ss_pred             CCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccc
Q psy16377        299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT  378 (1344)
Q Consensus       299 ~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~  378 (1344)
                       +..  +...+|.++..|+.+.+..+ +..+...+|.++..|+.+.+. +.+..++..+|.++.+|+.+.|..+ ++.+.
T Consensus       253 -v~~--i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~  326 (394)
T 4gt6_A          253 -VAR--IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL  326 (394)
T ss_dssp             -EEE--ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             -ceE--cccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh
Confidence             111  33455666666666666543 344556666677777777775 3466677777777777777777543 56666


Q ss_pred             cccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377        379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ  444 (1344)
Q Consensus       379 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  444 (1344)
                      ..+|.++.+|+.+.|.. .+..+...+|.+|++|+.+++.++...  ...+..+.+|+.+.+..+.
T Consensus       327 ~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             TTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH--HHTCBCCCCC---------
T ss_pred             HhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee--hhhhhccCCCCEEEeCCCC
Confidence            66777777777777754 366677777777778887777765422  1345666777777776553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.62  E-value=9.9e-15  Score=174.49  Aligned_cols=321  Identities=18%  Similarity=0.322  Sum_probs=200.4

Q ss_pred             CCCCCCCccCCCCC-CCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC---CCCCChhhhcCCCCCcEEEcccCcccc
Q psy16377        203 LRTLGDYSGITKFR-RLQNLHLENNEISQIAPNAFVALSSLRILNISSNH---LVSLPEGLFSSCRDISEIYAQKNSLVE  278 (1344)
Q Consensus       203 l~~l~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~~~~f~~l~~L~~L~L~~n~l~~  278 (1344)
                      ++.++.. +|.+++ .|+.+.+.. .++.+...+|.++.+|+.+.+..+.   ++.++..+|.+|.+|+.+.+..+ ++.
T Consensus        51 Vt~Ig~~-aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           51 VSKIGDR-VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEECTT-TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeEcCHh-hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            3455555 677664 477777764 3666777777777788887776653   66677777777777777766543 666


Q ss_pred             cChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhh
Q psy16377        279 LSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF  358 (1344)
Q Consensus       279 l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f  358 (1344)
                      ++...|..+.+|+.+.+..+.. .  +....|..+..|+.+.+..+ +..+...+|.+ ..|+.+.+..+ +..+...+|
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~~-~--I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af  201 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGVT-S--VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAF  201 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTCC-E--ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTT
T ss_pred             ehhhhhhhhcccccccccceee-e--ecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchh
Confidence            7777777778888887765432 2  55667777777877777653 66666666654 46777777654 556666677


Q ss_pred             cCCCCccEEEccCCcccccccccc-------------cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCcc
Q psy16377        359 LSLYNLHTIYLSENRIHHITAHLF-------------NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI  425 (1344)
Q Consensus       359 ~~l~~L~~L~Ls~n~l~~~~~~~~-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l  425 (1344)
                      ..+..++................+             .....+..+.+. +.+..+...+|.+|..|+.+.+..+...--
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~  280 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVSIG  280 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCEEC
T ss_pred             hhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccceec
Confidence            777777777665544332221111             112233334433 234445566777777777777765443322


Q ss_pred             chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCC
Q psy16377        426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNK  505 (1344)
Q Consensus       426 p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  505 (1344)
                      ..+|.+++.|+.+.+. +.+..+...+|.+|.+|+.+.|.++ ++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.
T Consensus       281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~  357 (394)
T 4gt6_A          281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT  357 (394)
T ss_dssp             TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred             CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence            3456677777777775 3566677777777777777777643 66677777777777777777543 6677777777777


Q ss_pred             ccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377        506 RLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN  538 (1344)
Q Consensus       506 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  538 (1344)
                      +|+.+++.++...  ...+..+.+|+.+.+..+
T Consensus       358 ~L~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          358 ALNNIEYSGSRSQ--WNAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCCEEEESSCHHH--HHTCBCCCCC--------
T ss_pred             CCCEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence            7777777765321  134455566666655444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=2.4e-15  Score=188.25  Aligned_cols=174  Identities=22%  Similarity=0.348  Sum_probs=134.7

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +.+|+.|++++|.+..++   .+..+++|+.|+|++|.+.++.+  +..+++|+.|+|++|.+..++  .|..+++|+.|
T Consensus        42 L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEE
T ss_pred             CCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEE
Confidence            678888888888888875   37788888899998888888754  888888888888888888776  36778888888


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      +|++|.+..++.  +..+++|+.|+|++|.+++  +  ..+..+++|+.|+|++|.+..+.+  +..+++|+.|+|++|.
T Consensus       115 ~Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~--l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          115 SLEHNGISDING--LVHLPQLESLYLGNNKITD--I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCSEEECCSSCCCC--C--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EecCCCCCCCcc--ccCCCccCEEECCCCccCC--c--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            888888887643  5778888888888888775  2  567777888888888888777655  7777788888888877


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccc
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAH  380 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~  380 (1344)
                      +..++  .+..+++|+.|+|++|++.+.+..
T Consensus       187 i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          187 ISDLR--ALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             CCBCG--GGTTCTTCSEEECCSEEEECCCCC
T ss_pred             CCCCh--HHccCCCCCEEEccCCcCcCCccc
Confidence            77764  366777777777777777655443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=5.8e-15  Score=161.14  Aligned_cols=152  Identities=28%  Similarity=0.439  Sum_probs=121.4

Q ss_pred             ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377        193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ  272 (1344)
Q Consensus       193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  272 (1344)
                      -+.++++++.++.+|..  +.  ++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+++..|.++++|++|+|+
T Consensus        13 ~~~v~c~~~~l~~iP~~--l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTN--LP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCSSCCSS--CC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcCcCCCc--cC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            36789999999988864  33  688999999999998888788889999999999999888877788888888888888


Q ss_pred             cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCc
Q psy16377        273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI  350 (1344)
Q Consensus       273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  350 (1344)
                      +|.++.+++..|..+++|+.|+|++|.+++  +....|..+++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINC--LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCE--eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            888888888877888888888888888776  5556677777777777777777777666666666677777766665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=8.9e-15  Score=159.66  Aligned_cols=152  Identities=30%  Similarity=0.488  Sum_probs=82.8

Q ss_pred             cEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcCh-hhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377        194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAP-NAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ  272 (1344)
Q Consensus       194 ~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  272 (1344)
                      +.+++++|.++.+|..  +  ...++.|+|++|.++++.+ ..|.++++|++|+|++|.++.+++..|.++++|++|+|+
T Consensus        14 ~~l~~s~n~l~~iP~~--~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH--I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSCCSC--C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccCccC--C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3455555555555432  2  1234555555555555432 234555555555555555555555555555555555555


Q ss_pred             cCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCcc
Q psy16377        273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIG  351 (1344)
Q Consensus       273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  351 (1344)
                      +|.+..+++..|..+++|++|+|++|.+++  +.+..|.++++|+.|+|++|.++.+.+..|..+++|+.|+|++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCC--BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCe--ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            555555555555555555555555555554  33445555566666666666666655555666666666666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=4.8e-15  Score=185.55  Aligned_cols=150  Identities=33%  Similarity=0.435  Sum_probs=68.3

Q ss_pred             CCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEE
Q psy16377        336 DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKEL  415 (1344)
Q Consensus       336 ~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  415 (1344)
                      .+++|+.|+|++|.+..+++  +..+++|+.|+|++|.+.++.  .+..+++|+.|+|++|.+..+  ..+..+++|+.|
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  136 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  136 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence            33333444444333333332  333444444444444433322  233444444444444444433  124444555555


Q ss_pred             EccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcc
Q psy16377        416 DLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       416 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                      +|++|.+..+ ..+..+++|+.|+|++|.+.++.+  +..+++|+.|+|++|.++.++  .+..+++|+.|+|++|++..
T Consensus       137 ~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          137 YLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEEC
T ss_pred             ECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcC
Confidence            5555555444 334455555555555555554433  445555555555555554442  24455555555555555544


Q ss_pred             c
Q psy16377        496 I  496 (1344)
Q Consensus       496 ~  496 (1344)
                      .
T Consensus       212 ~  212 (605)
T 1m9s_A          212 K  212 (605)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.59  E-value=7.7e-15  Score=156.52  Aligned_cols=173  Identities=21%  Similarity=0.331  Sum_probs=135.6

Q ss_pred             cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCc
Q psy16377        531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNL  608 (1344)
Q Consensus       531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~  608 (1344)
                      +.+++++|+++.++. .+|.+++.|++++|.|+.++.  .+..+++|+.|++++|+|+++.+..+.  .+|++|+|++|+
T Consensus        13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            467778887777763 466789999999999988874  567788999999999999998876554  689999999999


Q ss_pred             CCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCc
Q psy16377        609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK  688 (1344)
Q Consensus       609 i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~  688 (1344)
                      |+++.+..|.++++|+.|+|++|+|+.++...+     .....+..+++++||+.|+|.+.||.......          
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~----------  154 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF-----NDLSALSHLAIGANPLYCDCNMQWLSDWVKSE----------  154 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT-----TTCTTCCEEECCSSCEECSGGGHHHHHHHHHS----------
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh-----hcCccccEEEeCCCCeecCCcCHHHHHHHHhc----------
Confidence            999999999999999999999999998877554     24467899999999999999999987642211          


Q ss_pred             cccCCCceeecccCCCCccccccccCCCCCcCCCC
Q psy16377        689 IMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYD  723 (1344)
Q Consensus       689 ~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~  723 (1344)
                      ..+...+.|..|..  +++..+.+++..++.|.+.
T Consensus       155 ~~~~~~~~C~~P~~--l~g~~l~~~~~~~~~~~~~  187 (193)
T 2wfh_A          155 YKEPGIARCAGPGE--MADKLLLTTPSKKFTCAAA  187 (193)
T ss_dssp             SCCCSCCBEEESGG--GTTCBTTTSCGGGCCC---
T ss_pred             cCCCCCcCcCCchH--HCCCCcccCChHHeeehhh
Confidence            12335678987654  4445677777777766554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.56  E-value=1.1e-14  Score=156.18  Aligned_cols=154  Identities=12%  Similarity=0.165  Sum_probs=114.4

Q ss_pred             CCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCC
Q psy16377        123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNK  202 (1344)
Q Consensus       123 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~  202 (1344)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.++.++.                   +.++++|++|++++|.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~-------------------l~~l~~L~~L~l~~n~   99 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP-------------------ISGLSNLERLRIMGKD   99 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGG-------------------GTTCTTCCEEEEECTT
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchh-------------------hhcCCCCCEEEeECCc
Confidence            45677888888888888777  36778888888888887665432                   2347788888888888


Q ss_pred             CCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCC-CCCCChhhhcCCCCCcEEEcccCcccccCh
Q psy16377        203 LRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH-LVSLPEGLFSSCRDISEIYAQKNSLVELSR  281 (1344)
Q Consensus       203 l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~  281 (1344)
                      ++..... .+..+++|+.|++++|.+++..+..+..+++|++|++++|. +..++  .+..+++|++|++++|.+..++ 
T Consensus       100 l~~~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-  175 (197)
T 4ezg_A          100 VTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-  175 (197)
T ss_dssp             CBGGGSC-CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-
T ss_pred             cCcccCh-hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-
Confidence            8763333 57888888888888888887777888888888888888887 77775  3677788888888888777766 


Q ss_pred             hhhcCCCCCCEEEccCCCCCC
Q psy16377        282 GLFHKLEQLLVLDLSSNHLSS  302 (1344)
Q Consensus       282 ~~~~~l~~L~~L~Ls~n~l~~  302 (1344)
                       .+..+++|+.|++++|.+.+
T Consensus       176 -~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -TGGGCSSCCEEEECBC----
T ss_pred             -HhccCCCCCEEEeeCcccCC
Confidence             35677788888887777643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.55  E-value=3.2e-14  Score=156.33  Aligned_cols=148  Identities=30%  Similarity=0.440  Sum_probs=68.4

Q ss_pred             cEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCC
Q psy16377        317 IILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN  396 (1344)
Q Consensus       317 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  396 (1344)
                      +.++.+++.++.++...   .++|+.|+|++|.+..+.+..|..+++|+.|+|++|.+..+.+..|.++++|+.|+|++|
T Consensus        22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            34444444444443321   144455555555554444444444555555555555544444444444444445555544


Q ss_pred             cCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccC
Q psy16377        397 LLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN  467 (1344)
Q Consensus       397 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  467 (1344)
                      .+..+.+..|..+++|+.|+|++|.+..+|..+..+++|++|+|++|++..+.+..|..+++|+.|++++|
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            44444444444444555555555554444444444444444444444444443333333333433333333

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=2.6e-14  Score=152.39  Aligned_cols=174  Identities=16%  Similarity=0.277  Sum_probs=133.7

Q ss_pred             cEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccccccc--CcccEEEcCCCc
Q psy16377        531 LWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIP--NSVEVLFINNNL  608 (1344)
Q Consensus       531 ~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~~~~~--~sL~~L~Ls~N~  608 (1344)
                      +.+++++|+++.++. .+|.+++.|++++|.++.++....+..+++|+.|++++|+++++.+..+.  .+|++|+|++|+
T Consensus        11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            567777777766654 45568888888888888776533456788999999999999998765554  589999999999


Q ss_pred             CCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCc
Q psy16377        609 IKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPK  688 (1344)
Q Consensus       609 i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~  688 (1344)
                      |.++.+..|.++++|++|+|++|+|+++.+..+     .....+..+++++||+.|+|.+.|+...-..        .  
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~--------~--  154 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-----EHLNSLTSLNLASNPFNCNCHLAWFAEWLRK--------K--  154 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-----TTCTTCCEEECTTCCBCCSGGGHHHHHHHHH--------H--
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-----hcCCCCCEEEeCCCCccCcCcchHHHHHHHH--------c--
Confidence            999999999999999999999999998876554     3446789999999999999999988652110        0  


Q ss_pred             cccCCCceeecccCCCCccccccccCCCCCcCCC
Q psy16377        689 IMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPY  722 (1344)
Q Consensus       689 ~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~  722 (1344)
                      ........|..|.  .+++.++.++...++.|.-
T Consensus       155 ~~~~~~~~C~~P~--~l~~~~l~~l~~~~~~C~~  186 (192)
T 1w8a_A          155 SLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             CCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred             CCCCCCCCCCCCh--HHcCCChhhCcHhhcCcCC
Confidence            0112356687654  3556778888888887753

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=2.5e-14  Score=153.24  Aligned_cols=152  Identities=19%  Similarity=0.254  Sum_probs=86.0

Q ss_pred             cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377        311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK  390 (1344)
Q Consensus       311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  390 (1344)
                      ..+++|+.|++++|.+..+.  .+..+++|+.|++++|.+..++  .+..+++|+.|++++|.+.+..+..+.++++|+.
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455556666665555443  3555566666666666555443  3555666666666666666555555556666666


Q ss_pred             EEccCCcCCCCChhhhcCCCCCcEEEccCCC-CCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC
Q psy16377        391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNA-IVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  469 (1344)
                      |++++|.+.+..+..+..+++|+.|++++|. +..+| .+..+++|++|++++|.+.++.  .+..+++|+.|++++|.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            6666666655555555566666666666665 55554 4555556666666665555543  345555555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=1.1e-14  Score=163.59  Aligned_cols=171  Identities=18%  Similarity=0.219  Sum_probs=106.6

Q ss_pred             CCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEec
Q psy16377        433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRL  512 (1344)
Q Consensus       433 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  512 (1344)
                      .++..++++++.++++.  .+..+++|+.|++++|.++.++  .+..+++|+.|++++|+++.+.+  +..++       
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~-------   85 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLT-------   85 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCS-------
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCC-------
Confidence            34455555555555543  3455555666666655555554  24455555555555555554443  44444       


Q ss_pred             cccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCCCccEEEcCCCcCCCCCccccccCCCcccEEECCCCccccccc
Q psy16377        513 DSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISE  592 (1344)
Q Consensus       513 ~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N~l~~~~~  592 (1344)
                                      +|+.|++++|+++.++.... .+|+.|++++|.++.++.   +..+++|+.|++++|+++++..
T Consensus        86 ----------------~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~~~~  145 (263)
T 1xeu_A           86 ----------------KLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS---LIHLKNLEILSIRNNKLKSIVM  145 (263)
T ss_dssp             ----------------SCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG---GTTCTTCCEEECTTSCCCBCGG
T ss_pred             ----------------CCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh---hcCcccccEEECCCCcCCCChH
Confidence                            44445555544444332222 556666666666666543   5567788888888888888765


Q ss_pred             ccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCccccc
Q psy16377        593 LSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDL  638 (1344)
Q Consensus       593 ~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~  638 (1344)
                      ..-..+|+.|++++|++.+.  ..+..+++|+.|++++|.++..+.
T Consensus       146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            55556888888888888877  568888999999999998876543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=6.5e-15  Score=165.46  Aligned_cols=150  Identities=26%  Similarity=0.348  Sum_probs=68.0

Q ss_pred             ccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCc
Q psy16377        334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK  413 (1344)
Q Consensus       334 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  413 (1344)
                      +..+++|+.|++++|.+..++  .+..+++|+.|++++|.+.++.+  +.++++|+.|++++|.+.++..  +.. ++|+
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCC
T ss_pred             hhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-Cccc
Confidence            334444444444444444433  23444444444444444444433  3444444444444444444322  111 4455


Q ss_pred             EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377        414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI  493 (1344)
Q Consensus       414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i  493 (1344)
                      .|++++|.++.++ .+..+++|+.|++++|+++++.  .+..+++|+.|++++|.++.+  ..+..+++|+.|++++|++
T Consensus       110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             EEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             EEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            5555555554443 2444555555555555554442  344445555555555554444  2244445555555555444


Q ss_pred             cc
Q psy16377        494 HQ  495 (1344)
Q Consensus       494 ~~  495 (1344)
                      ..
T Consensus       185 ~~  186 (263)
T 1xeu_A          185 VN  186 (263)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.48  E-value=2.1e-12  Score=153.50  Aligned_cols=287  Identities=16%  Similarity=0.249  Sum_probs=120.3

Q ss_pred             ccCCCCCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhh
Q psy16377         67 FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVF  146 (1344)
Q Consensus        67 f~~l~~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~  146 (1344)
                      |....+|+.+.+.. .++.|+..+|.+|.+|+.++|..        ....+...+|.++ +|+.+.+.. +++.+...+|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--------~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF  110 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--------TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF  110 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--------TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--------cceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence            44444555555542 25555555555555555555521        1112334445544 355555443 2555555555


Q ss_pred             cCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCC
Q psy16377        147 CSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENN  226 (1344)
Q Consensus       147 ~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n  226 (1344)
                      ..+ +|+.+.+..+ +..+...+|.                  ..+|+.+.+..+ ++.+... .+..+..|+.+.+..+
T Consensus       111 ~~~-~L~~i~lp~~-~~~i~~~~F~------------------~~~l~~~~~~~~-v~~i~~~-~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          111 QGT-DLDDFEFPGA-TTEIGNYIFY------------------NSSVKRIVIPKS-VTTIKDG-IGYKAENLEKIEVSSN  168 (379)
T ss_dssp             TTC-CCSEEECCTT-CCEECTTTTT------------------TCCCCEEEECTT-CCEECSC-TTTTCTTCCEEEECTT
T ss_pred             ccC-CcccccCCCc-cccccccccc------------------cceeeeeeccce-eeccccc-hhcccccccccccccc
Confidence            443 4555555432 3333333332                  123333333322 3333333 4555555555554433


Q ss_pred             CCCCc------------ChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEE
Q psy16377        227 EISQI------------APNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLD  294 (1344)
Q Consensus       227 ~i~~~------------~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  294 (1344)
                      .....            ....+.....+..+.+... ...+....|..+.+|+.+.+..+ +..+....|.++..|+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~  246 (379)
T 4h09_A          169 NKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIA  246 (379)
T ss_dssp             CSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEE
T ss_pred             cceeecccceecccccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEE
Confidence            22111            0112222333333333222 22233334444444544444322 3344444444444444444


Q ss_pred             ccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcc
Q psy16377        295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRI  374 (1344)
Q Consensus       295 Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l  374 (1344)
                      +..+ ++.  +....|.++.+|+.+.+.. .+..+...+|.+|.+|+.+.+.++.+..++..+|.++.+|+.+.|..+ +
T Consensus       247 lp~~-v~~--I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l  321 (379)
T 4h09_A          247 IPKN-VTS--IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L  321 (379)
T ss_dssp             ECTT-CCE--ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred             cCCC-ccE--eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence            4433 221  3334444444444444432 233344444444444444444444444444444444444444444322 3


Q ss_pred             cccccccccCCCceeEEEc
Q psy16377        375 HHITAHLFNGLYVLSKLTL  393 (1344)
Q Consensus       375 ~~~~~~~~~~l~~L~~L~L  393 (1344)
                      +.+...+|.++.+|+.+.+
T Consensus       322 ~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          322 KTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CEECTTTTTTCTTCCCCCC
T ss_pred             cEEHHHHhhCCCCCCEEEE
Confidence            3333334444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=3.6e-14  Score=147.74  Aligned_cols=136  Identities=18%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             CCCCCCCccEEEEeCCccc--ccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcc
Q psy16377        772 PPRIPMDATHVYLDGNTFK--TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLE  849 (1344)
Q Consensus       772 p~~ip~~l~~L~L~~n~l~--~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~  849 (1344)
                      +...|..++.|++++|.++  .++.. |..+++|+.|++++|.|+.+  ..|..+++|++|+|++|+++...+..+..++
T Consensus        19 ~~~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           19 RNRTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             ccCCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            4455678999999999998  77654 78899999999999999988  7899999999999999999997777888899


Q ss_pred             ccceeeccccccccccC-ccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEEecCCccc
Q psy16377        850 KLSELYLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVYLGNNPFS  910 (1344)
Q Consensus       850 ~L~~L~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~l~~Np~~  910 (1344)
                      +|+.|+|++|+|+.++. ..|..+++|++|+|++|+++.+++   ..+..+++|++|++++|+..
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            99999999999999865 788899999999999999999988   67888999999999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.46  E-value=2.3e-12  Score=153.11  Aligned_cols=314  Identities=15%  Similarity=0.217  Sum_probs=138.8

Q ss_pred             hcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcch
Q psy16377         91 FSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGF  170 (1344)
Q Consensus        91 f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  170 (1344)
                      |....+|+.+.+.        .....+...+|.+|.+|+.++|..+ ++.|...+|.++ +|+.+.+.. .++.++..+|
T Consensus        42 ~~~~~~i~~v~ip--------~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF  110 (379)
T 4h09_A           42 YKDRDRISEVRVN--------SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF  110 (379)
T ss_dssp             GGGGGGCSEEEEC--------TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred             cccccCCEEEEeC--------CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence            4555667777773        2223344556777777777777543 666666666665 466665543 2444444444


Q ss_pred             hhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCC
Q psy16377        171 AVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN  250 (1344)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n  250 (1344)
                      .                  ..+|+.+++..+ ++.+... .|.++ +|+.+.+.. .++.+...+|.++..|+.+.+..+
T Consensus       111 ~------------------~~~L~~i~lp~~-~~~i~~~-~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          111 Q------------------GTDLDDFEFPGA-TTEIGNY-IFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             T------------------TCCCSEEECCTT-CCEECTT-TTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTT
T ss_pred             c------------------cCCcccccCCCc-ccccccc-ccccc-eeeeeeccc-eeeccccchhcccccccccccccc
Confidence            2                  224555555443 3333332 33333 333333322 233333334444444444444333


Q ss_pred             CCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccc
Q psy16377        251 HLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID  330 (1344)
Q Consensus       251 ~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~  330 (1344)
                      ....+....+..           +.. ......+..+..+..+.+......   +....+..+.+|+.+.+..+ +..+.
T Consensus       169 ~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~f~~~~~l~~i~~~~~-~~~i~  232 (379)
T 4h09_A          169 NKNYVAENYVLY-----------NKN-KTILESYPAAKTGTEFTIPSTVKT---VTAYGFSYGKNLKKITITSG-VTTLG  232 (379)
T ss_dssp             CSSEEEETTEEE-----------ETT-SSEEEECCTTCCCSEEECCTTCCE---ECTTTTTTCSSCSEEECCTT-CCEEC
T ss_pred             cceeecccceec-----------ccc-cceeccccccccccccccccceeE---Eeecccccccccceeeeccc-eeEEc
Confidence            211110000000           000 000001122233333333222111   22233344444444444322 33334


Q ss_pred             cccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCC
Q psy16377        331 AKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS  410 (1344)
Q Consensus       331 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  410 (1344)
                      ..+|.++..|+.+.+..+ +..+...+|.++.+|+.+.+                        .. .+..+...+|.+|+
T Consensus       233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l------------------------~~-~i~~i~~~aF~~c~  286 (379)
T 4h09_A          233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF------------------------YA-KVKTVPYLLCSGCS  286 (379)
T ss_dssp             TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE------------------------CC-CCSEECTTTTTTCT
T ss_pred             cccccCCccceEEEcCCC-ccEeCccccceeehhccccc------------------------cc-cceecccccccccc
Confidence            444444444554444433 44444444444444444444                        32 23333344445555


Q ss_pred             CCcEEEccCCCCCccc-hhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCC
Q psy16377        411 ALKELDLSSNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELP  481 (1344)
Q Consensus       411 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  481 (1344)
                      +|+.+.+.++.+..|+ .+|.++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+..+ ++.|...+|.++.
T Consensus       287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            5555555544444443 24445555555555432 45555555666666666655432 5555555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.43  E-value=1.1e-15  Score=190.08  Aligned_cols=216  Identities=21%  Similarity=0.271  Sum_probs=112.9

Q ss_pred             cCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcc
Q psy16377        261 SSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFL  340 (1344)
Q Consensus       261 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  340 (1344)
                      ..+++|+.|+|++|.+..+|..+ +++++|+.|++++|...         ..++.+    +..+...+..+..+..+++|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l---------~~l~~l----l~~~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCL---------LTIILL----MRALDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHH---------HHHHHH----HHHHCTGGGHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhh---------hhHHHH----HHhcccccCCHHHHHHHHhc
Confidence            34566666777777666665543 66666776666443210         000000    00111223344455555666


Q ss_pred             cEEE-ecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccC
Q psy16377        341 QRLD-LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS  419 (1344)
Q Consensus       341 ~~L~-Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  419 (1344)
                      +.|+ ++.|.+.           +|..+.+++|.+..+.+      ..|+.|++++|.+++++ . |..+++|+.|+|++
T Consensus       412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~-~~~l~~L~~L~Ls~  472 (567)
T 1dce_A          412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-H-LEQLLLVTHLDLSH  472 (567)
T ss_dssp             HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-C-GGGGTTCCEEECCS
T ss_pred             ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-C-ccccccCcEeecCc
Confidence            6555 4433222           22223333443333322      12555666666665543 2 55566666666666


Q ss_pred             CCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCC-cccccCCCCccEEEcCCCcCccccc
Q psy16377        420 NAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLS-SGMLYELPSLEVLNLSKNKIHQIEI  498 (1344)
Q Consensus       420 n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~n~i~~~~~  498 (1344)
                      |.++.+|..++.+++|+.|+|++|.+++++  .|..+++|+.|+|++|.++.+. +..+..+++|+.|++++|+++++++
T Consensus       473 N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          473 NRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            666666666666666666666666666542  5566666666666666665553 3445666666666666666655543


Q ss_pred             c---cccCCCccceEe
Q psy16377        499 G---TFEKNKRLAAIR  511 (1344)
Q Consensus       499 ~---~~~~l~~L~~L~  511 (1344)
                      .   .+..+++|+.|+
T Consensus       551 ~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          551 IQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTHHHHHCTTCSEEE
T ss_pred             HHHHHHHHCcccCccC
Confidence            2   122355666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=4.5e-15  Score=184.73  Aligned_cols=120  Identities=24%  Similarity=0.356  Sum_probs=81.4

Q ss_pred             CCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCC
Q psy16377        411 ALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK  490 (1344)
Q Consensus       411 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~  490 (1344)
                      .|+.|+|++|.++.+|. +..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|.++.+|  .+..+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCC
Confidence            46777777777777765 77777777777777777744 446677777777777777776665  366777777777777


Q ss_pred             CcCcccc-cccccCCCccceEeccccCCCChhh----HhhcCCCCcEEE
Q psy16377        491 NKIHQIE-IGTFEKNKRLAAIRLDSNFLTDING----VFTYLAQLLWLN  534 (1344)
Q Consensus       491 n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~  534 (1344)
                      |+++++. +..|..+++|+.|+|++|.++++|.    .+..+++|+.|+
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            7777665 6666677777777777777665432    334466666665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=1.7e-13  Score=143.83  Aligned_cols=131  Identities=18%  Similarity=0.217  Sum_probs=112.4

Q ss_pred             CCCccEEEEeCCcccccCCCcCCCC-CCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcccccee
Q psy16377        776 PMDATHVYLDGNTFKTIPNHVFIGR-KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL  854 (1344)
Q Consensus       776 p~~l~~L~L~~n~l~~l~~~~f~~l-~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  854 (1344)
                      +..++.|++++|+++.++.  +..+ ++|+.|++++|+|+.+  ..|.++++|++|+|++|+|+.+++..|..+++|+.|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3567899999999998853  4444 4999999999999988  678899999999999999999988888999999999


Q ss_pred             eccccccccccC-ccccCCCCCCEEEccCCCCcccccc---cccCCCCCcEEEecCCccc
Q psy16377        855 YLQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRAF---DLNTNSMLRKVYLGNNPFS  910 (1344)
Q Consensus       855 ~L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~l~~~~~L~~L~l~~Np~~  910 (1344)
                      +|++|+|+.++. ..|..+++|++|+|++|.++.++..   .+..+++|+.|++++|+..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998876 5788899999999999999988775   5777899999999988754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=1.5e-13  Score=139.90  Aligned_cols=128  Identities=17%  Similarity=0.159  Sum_probs=114.6

Q ss_pred             CCCccEEEEeCCccc--ccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccce
Q psy16377        776 PMDATHVYLDGNTFK--TIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSE  853 (1344)
Q Consensus       776 p~~l~~L~L~~n~l~--~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  853 (1344)
                      +..++.|++++|.++  .++. .|..+++|+.|++++|+++.+  ..|.++++|++|+|++|+++...+..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            467899999999998  6665 678899999999999999998  78999999999999999999976778888999999


Q ss_pred             eecccccccccc-CccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEEecC
Q psy16377        854 LYLQENRIEYIA-NGTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVYLGN  906 (1344)
Q Consensus       854 L~L~~N~l~~i~-~~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~l~~  906 (1344)
                      |+|++|+|+.++ +..|..+++|++|+|++|+++.+++   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999999985 3788899999999999999999988   6788889999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=9.9e-14  Score=178.15  Aligned_cols=122  Identities=25%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             cCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEE
Q psy16377        117 LVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRIL  196 (1344)
Q Consensus       117 ~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  196 (1344)
                      ..+..|..++.|+.|+|++|.+..++...+ .+++|++|+|++|.|+.++..                  +.++++|++|
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~------------------~~~l~~L~~L  275 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAE------------------IKNLSNLRVL  275 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGG------------------GGGGTTCCEE
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChh------------------hhCCCCCCEE
Confidence            456666667777777777777776666543 566666666666666655421                  1225666666


Q ss_pred             ECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhh
Q psy16377        197 DLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLF  260 (1344)
Q Consensus       197 dLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f  260 (1344)
                      +|++|.|+.+|.  .|.++++|+.|+|++|.++.+ |..|+++++|++|+|++|.+...++..|
T Consensus       276 ~Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          276 DLSHNRLTSLPA--ELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ECTTSCCSSCCS--SGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             eCcCCcCCccCh--hhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            666666666554  356666666666666666544 4446666666666666666665444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.37  E-value=1.1e-12  Score=136.61  Aligned_cols=131  Identities=27%  Similarity=0.305  Sum_probs=72.3

Q ss_pred             CCCcEEEccCCCCC--ccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEE
Q psy16377        410 SALKELDLSSNAIV--EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLN  487 (1344)
Q Consensus       410 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  487 (1344)
                      ++|+.|++++|.+.  .+|..+..+++|++|++++|.+.++  ..+..+++|+.|++++|.+....+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            44555555555555  5555555555555555555555554  3455555555555555555443333344455566666


Q ss_pred             cCCCcCccccc-ccccCCCccceEeccccCCCChhh----HhhcCCCCcEEEcCCCCCcc
Q psy16377        488 LSKNKIHQIEI-GTFEKNKRLAAIRLDSNFLTDING----VFTYLAQLLWLNLSENHLVW  542 (1344)
Q Consensus       488 Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~----~~~~l~~L~~L~Ls~n~l~~  542 (1344)
                      +++|.++.+.. ..+..+++|+.|++++|.++.++.    .+..+++|+.|++++|.+..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            66665555432 445555666666666666655543    55566666666666665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=2.9e-13  Score=173.84  Aligned_cols=151  Identities=21%  Similarity=0.270  Sum_probs=83.1

Q ss_pred             hhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCC
Q psy16377        403 SKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPS  482 (1344)
Q Consensus       403 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~  482 (1344)
                      +..|..++.|+.|+|++|.+..+|..+..+++|++|+|++|.++.+ +..|.++++|+.|+|++|.++.+|.. |.++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSS-GGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChh-hcCCCC
Confidence            4455566666666666666666666666666666666666666633 34566666666666666666666443 556666


Q ss_pred             ccEEEcCCCcCcccccccccCCCccceEeccccCCCCh-hhHhhcCC-CCcEEEcCCCCCccccCCCcCCCccEEEcCCC
Q psy16377        483 LEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI-NGVFTYLA-QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGN  560 (1344)
Q Consensus       483 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~lp~~L~~L~Ls~n  560 (1344)
                      |++|+|++|.|+.++. .|..+++|+.|+|++|.++.. |..+..+. .+..|++++|.+.    +.+|..+++|++++|
T Consensus       295 L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~----~~~p~~l~~l~l~~n  369 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE----IPLPHERRFIEINTD  369 (727)
T ss_dssp             CSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCC---------
T ss_pred             CCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc----CcCccccceeEeecc
Confidence            6666666666665543 366666666677776666643 33333221 1123567777765    567777888887776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=2.3e-12  Score=135.23  Aligned_cols=111  Identities=26%  Similarity=0.307  Sum_probs=50.9

Q ss_pred             cCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEE
Q psy16377        383 NGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDL  462 (1344)
Q Consensus       383 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  462 (1344)
                      ..+.+|+.|++++|.+..+ +......++|+.|++++|.+..+ ..+..+++|++|++++|.++++++..|..+++|+.|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            3444555555555555544 22111122555555555555544 344445555555555555554444444444445555


Q ss_pred             EcccCCCCCCCc-ccccCCCCccEEEcCCCcCcc
Q psy16377        463 RLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQ  495 (1344)
Q Consensus       463 ~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~  495 (1344)
                      ++++|.++.++. ..+..+++|+.|++++|++..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC
Confidence            555444444432 223444444444444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.30  E-value=5.9e-12  Score=124.01  Aligned_cols=48  Identities=29%  Similarity=0.637  Sum_probs=37.2

Q ss_pred             CCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCC
Q psy16377        896 NSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSP  945 (1344)
Q Consensus       896 ~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~  945 (1344)
                      +++|+.|+|++|||.|||+ +.||+.|+++....+. ..+++|..|....
T Consensus        54 l~~L~~L~L~~NP~~CdC~-l~~l~~wl~~~~~~~~-~~~~~C~~P~~l~  101 (130)
T 3rfe_A           54 LPALRTAHLGANPWRCDCR-LVPLRAWLAGRPERAP-YRDLRCVAPPALR  101 (130)
T ss_dssp             CTTCCEEECCSSCCBCSGG-GHHHHHHHHTSSCSGG-GTTCBCCBSTTTT
T ss_pred             ccccCEEEecCCCeeccCc-cHHHHHHHHhCccccc-ccCcEeCcChHHc
Confidence            3445557888999999999 7999999987755443 5789999987644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=8.2e-12  Score=126.97  Aligned_cols=104  Identities=29%  Similarity=0.320  Sum_probs=47.6

Q ss_pred             cCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccc--hhhcCCCCcc
Q psy16377        359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP--SALSELPFLK  436 (1344)
Q Consensus       359 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~  436 (1344)
                      ..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++  ..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            3444444444444444433  23344444444444444444433444444455555555555554432  3444455555


Q ss_pred             EEEccCCCCCccCc---chhcCCCCCcEEEc
Q psy16377        437 TLDLGENQISKIEN---GSFKNLQQLTDLRL  464 (1344)
Q Consensus       437 ~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L  464 (1344)
                      +|++++|.+++..+   ..+..+++|+.|++
T Consensus       117 ~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          117 SLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            55555554444433   33444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.16  E-value=1.3e-10  Score=121.02  Aligned_cols=107  Identities=27%  Similarity=0.408  Sum_probs=98.1

Q ss_pred             cccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377        192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  271 (1344)
                      ..+.|++++|.++.+|..  +  .++|+.|+|++|.++++.+..|.++++|++|+|++|.++.+++..|..+++|++|+|
T Consensus        10 ~~~~l~~s~n~l~~ip~~--~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTG--I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSC--C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCcc--C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            568999999999999874  3  388999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSS  302 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~  302 (1344)
                      ++|.+..+++..|..+++|+.|+|++|.+..
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            9999999999888999999999999998865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=1.9e-10  Score=120.18  Aligned_cols=106  Identities=26%  Similarity=0.451  Sum_probs=96.6

Q ss_pred             ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcc
Q psy16377        193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ  272 (1344)
Q Consensus       193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~  272 (1344)
                      -+.+++++|+++.+|..  +.  ++|+.|+|++|.+.++.|..|.++++|++|+|++|.++.+|...|.++++|+.|+|+
T Consensus        14 ~~~l~~~~n~l~~iP~~--~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAG--IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSC--CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCC--cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            47899999999999874  43  899999999999999989999999999999999999999999999999999999999


Q ss_pred             cCcccccChhhhcCCCCCCEEEccCCCCCC
Q psy16377        273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSS  302 (1344)
Q Consensus       273 ~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~  302 (1344)
                      +|.+..+++..|..+++|+.|+|++|.+..
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            999999998888899999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=6.3e-13  Score=142.41  Aligned_cols=133  Identities=23%  Similarity=0.362  Sum_probs=114.3

Q ss_pred             CCccEEEEeCC--cccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCcccccee
Q psy16377        777 MDATHVYLDGN--TFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL  854 (1344)
Q Consensus       777 ~~l~~L~L~~n--~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  854 (1344)
                      .+++...+.+.  .++.++. .|..+++|+.|++++|+++.++  .|.++++|+.|+|++|+++.++. .+..+++|+.|
T Consensus        23 l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L   98 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEEL   98 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEE
T ss_pred             cchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEE
Confidence            34556666653  5566654 6888999999999999999976  89999999999999999998864 67778999999


Q ss_pred             eccccccccccCccccCCCCCCEEEccCCCCccccc-ccccCCCCCcEEEecCCcccCCChh
Q psy16377        855 YLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCSCAT  915 (1344)
Q Consensus       855 ~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C~~  915 (1344)
                      +|++|+|+.++  .|..+++|++|+|++|+++.++. ..+..+++|++|++++|++.|.|+.
T Consensus        99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999986  58888999999999999999876 5678899999999999999999863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=8.4e-13  Score=141.42  Aligned_cols=112  Identities=27%  Similarity=0.281  Sum_probs=65.9

Q ss_pred             cccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCc
Q psy16377        381 LFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT  460 (1344)
Q Consensus       381 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  460 (1344)
                      .+..+++|+.|++++|.+.++.  .+..+++|+.|++++|.+..+|..+..+++|++|++++|.++++.  .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCC
Confidence            4555556666666666655543  455566666666666666666655555566666666666666542  355556666


Q ss_pred             EEEcccCCCCCCCc-ccccCCCCccEEEcCCCcCccc
Q psy16377        461 DLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQI  496 (1344)
Q Consensus       461 ~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~n~i~~~  496 (1344)
                      .|++++|.++.++. ..+..+++|++|++++|++...
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            66666666655443 3455566666666666655443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.97  E-value=1.4e-10  Score=136.65  Aligned_cols=136  Identities=21%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             CCccEEEccCCcccccccccc-cCCCceeEEEccCCcCCCCChhhh-----cCCCCCcEEEccCCCCCc-----cchhhc
Q psy16377        362 YNLHTIYLSENRIHHITAHLF-NGLYVLSKLTLSNNLLVNIDSKAF-----KNCSALKELDLSSNAIVE-----IPSALS  430 (1344)
Q Consensus       362 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~-----lp~~l~  430 (1344)
                      ++|+.|+|++|.+.......+ ..+.+|+.|+|++|.+.......+     ...++|++|+|++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            355555555555443222111 223455666666665544333332     234566666666666652     344455


Q ss_pred             CCCCccEEEccCCCCCccC----cchhcCCCCCcEEEcccCCCCCCCcc----cccCCCCccEEEcCCCcCcccc
Q psy16377        431 ELPFLKTLDLGENQISKIE----NGSFKNLQQLTDLRLVDNNIGNLSSG----MLYELPSLEVLNLSKNKIHQIE  497 (1344)
Q Consensus       431 ~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~n~i~~~~  497 (1344)
                      .+++|++|+|++|.+.+..    ...+..+++|+.|+|++|.++.....    .+..+++|++|+|++|.|+...
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            6666777777766665533    23344455566666666655432211    1223455666666666555443

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=98.97  E-value=5.2e-10  Score=115.66  Aligned_cols=87  Identities=9%  Similarity=0.152  Sum_probs=76.4

Q ss_pred             Cchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCccchhHHHH
Q psy16377       1035 PKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWSRSDFLIE 1112 (1344)
Q Consensus      1035 ~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~~~~~i~~ 1112 (1344)
                      ++|.  .|| ..|++.|+.  .|+++|+++||+.+|..+.                                   +.|.+
T Consensus        44 g~D~r~~Fv-~~L~~aL~~--~GI~~f~D~~el~~G~~I~-----------------------------------~~l~~   85 (204)
T 3ozi_A           44 GPDTREQFT-DFLYQSLRR--YKIHTFRDDDELLKGKEIG-----------------------------------PNLLR   85 (204)
T ss_dssp             HHHHTTTHH-HHHHHHHHH--TTCCEEEEETTTCCGGGTT-----------------------------------TTHHH
T ss_pred             ccCCCHHHH-HHHHHHHHH--CCCcEEEeCCccCCCCchH-----------------------------------HHHHH
Confidence            4554  355 778999996  4799999999999999999                                   89999


Q ss_pred             HHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377       1113 AAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus      1113 ~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
                      ||+.||..|+|+|++|..|.||..|+..+++..-..+...||+|+|+
T Consensus        86 aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~  132 (204)
T 3ozi_A           86 AIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYM  132 (204)
T ss_dssp             HHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEES
T ss_pred             HHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEee
Confidence            99999999999999999999999999999886544567899999996

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=9.3e-10  Score=128.85  Aligned_cols=130  Identities=18%  Similarity=0.350  Sum_probs=100.7

Q ss_pred             EEcCCC-cCCCCCccccccCCCcccEEECCC-Cccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEecC
Q psy16377        555 LDIHGN-YISSLNNYYEIKDGLSIKNLDASH-NRILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYA  630 (1344)
Q Consensus       555 L~Ls~n-~l~~l~~~~~l~~~~~L~~L~Ls~-N~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~  630 (1344)
                      ++++++ .++.+|.   +..+.+|+.|+|++ |+|.++++..+.  .+|+.|+|++|+|+++.|..|.++++|+.|+|++
T Consensus        13 v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            466666 6777765   55677899999996 999988875554  5899999999999999999999999999999999


Q ss_pred             CCCcccccccccccCCCCCCCCCeEEcCCCcccccccCccccccccCCCCccccccCccccCCCceeeccc
Q psy16377        631 NDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTY  701 (1344)
Q Consensus       631 N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~  701 (1344)
                      |+|+.++...+..      ..|..+++.+|++.|+|.+.||.......        ...++...+.|..+.
T Consensus        90 N~l~~~~~~~~~~------~~L~~l~l~~N~~~c~c~l~~~~~~~~~~--------~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A           90 NALESLSWKTVQG------LSLQELVLSGNPLHCSCALRWLQRWEEEG--------LGGVPEQKLQCHGQG  146 (347)
T ss_dssp             SCCSCCCSTTTCS------CCCCEEECCSSCCCCCGGGHHHHHHHHTT--------CSSCGGGCCCCSSSS
T ss_pred             CccceeCHHHccc------CCceEEEeeCCCccCCCccHHHHHHHHhC--------cccccccCCCCCCCh
Confidence            9999988765532      23899999999999999999997643221        112344567776543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.94  E-value=1.7e-10  Score=135.93  Aligned_cols=136  Identities=22%  Similarity=0.226  Sum_probs=61.3

Q ss_pred             CcccEEEccCCCCCccccccc-cCCCcccEEEecCCCccccchhhh-----cCCCCccEEEccCCcccccccc----ccc
Q psy16377        314 IRLIILNLSNNELTRIDAKTF-KDLVFLQRLDLRNNSIGYIEDNAF-----LSLYNLHTIYLSENRIHHITAH----LFN  383 (1344)
Q Consensus       314 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~f-----~~l~~L~~L~Ls~n~l~~~~~~----~~~  383 (1344)
                      .+|+.|+|++|.++......+ ..+.+|+.|+|++|.++......+     ...++|+.|+|++|.++.....    .+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            355555555555443222211 223455666666665543332222     2345566666666655442221    223


Q ss_pred             CCCceeEEEccCCcCCCCC----hhhhcCCCCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccC
Q psy16377        384 GLYVLSKLTLSNNLLVNID----SKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIE  449 (1344)
Q Consensus       384 ~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~  449 (1344)
                      .+++|++|+|++|.+.+..    ...+..+++|+.|+|++|.++.     ++..+..+++|++|+|++|.|++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            3444555555555443322    2233344455555555555541     2233334455555555555544433

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=98.74  E-value=1.2e-09  Score=110.91  Aligned_cols=97  Identities=11%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             ccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCcc
Q psy16377       1026 HFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWS 1105 (1344)
Q Consensus      1026 ~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~ 1105 (1344)
                      .|+.+..+.++|+..+...|...|+.  .|+++|+.++|+.+|..+.                                 
T Consensus        20 ~~dvFISy~~~D~~~~~~~L~~~L~~--~gi~v~~D~~~l~~G~~~~---------------------------------   64 (154)
T 3h16_A           20 PHDIFISHAWEDKADFVEALAHTLRA--AGAEVWYDDFSLRPGDSLR---------------------------------   64 (154)
T ss_dssp             SEEEEEEEEGGGTTTTHHHHHHHHHH--HTCCEECGGGEECTTCCHH---------------------------------
T ss_pred             CceEEEECcccChHHHHHHHHHHHHH--CCCcEEEcHHhCCCccHHH---------------------------------
Confidence            33444444466765444678999996  4699999999999999999                                 


Q ss_pred             chhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecC
Q psy16377       1106 RSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENI 1160 (1344)
Q Consensus      1106 ~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~ 1160 (1344)
                        +.|.++|+.||++|+|+|++|+.++||..|+..|+.. ..++..++|+|+++.
T Consensus        65 --~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~-~~~~~~~iiPV~~~v  116 (154)
T 3h16_A           65 --RSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQL-ESSGRSRILPIWHKV  116 (154)
T ss_dssp             --HHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCC-CTTSCCCEEEEEESC
T ss_pred             --HHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHH-HhcCCCEEEEEEecC
Confidence              8999999999999999999999999999999999874 345667899999853

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=98.71  E-value=4.1e-09  Score=107.36  Aligned_cols=93  Identities=14%  Similarity=0.172  Sum_probs=65.5

Q ss_pred             CCccCCCCchh--HHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCCcc
Q psy16377       1028 GEDREKLPKDE--EFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTEWS 1105 (1344)
Q Consensus      1028 ~~~~~~~~~d~--~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~w~ 1105 (1344)
                      |.+...-++|.  .|| ..|.+.|+.  .|++.|++++|+.+|..+.                                 
T Consensus        10 DVFiSfrg~D~r~~Fv-~~L~~~L~~--~gi~~f~D~~~l~~G~~i~---------------------------------   53 (176)
T 3jrn_A           10 DVFLSFRGHDTRHNFI-SFLYKELVR--RSIRTFKDDKELENGQRFS---------------------------------   53 (176)
T ss_dssp             EEEEEECHHHHTTTHH-HHHHHHHHH--TTCCEECCCC------------------------------------------
T ss_pred             eEEEECcCcccChHHH-HHHHHHHHH--CCCEEEEEcccccCCCchH---------------------------------
Confidence            33333334554  466 678999996  4799999999999999999                                 


Q ss_pred             chhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEec
Q psy16377       1106 RSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEEN 1159 (1344)
Q Consensus      1106 ~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~ 1159 (1344)
                        +.|.+||+.||..|+|+|++|..|.||..|+..++.. .+++...||+|+|+
T Consensus        54 --~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~-~~~~~~~ViPIfy~  104 (176)
T 3jrn_A           54 --PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYG  104 (176)
T ss_dssp             -------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHH-HHTTSCEEEEEECS
T ss_pred             --HHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhh-hccCCCEEEEEEec
Confidence              8999999999999999999999999999999988875 47788999999995

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.45  E-value=1.4e-07  Score=109.99  Aligned_cols=135  Identities=17%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             hhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhc--CCCCCcEEEccc--CC-CC-----CCC
Q psy16377        404 KAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK--NLQQLTDLRLVD--NN-IG-----NLS  473 (1344)
Q Consensus       404 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~--n~-l~-----~l~  473 (1344)
                      ..+..+++|+.|+|++|.-..++. +. +++|+.|+|..|.+.......+.  .+++|+.|+|+.  +. .+     .+.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            334555666666666553223332 22 56666666666655443322332  456666666542  11 11     111


Q ss_pred             cccc--cCCCCccEEEcCCCcCcccccccc---cCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCc
Q psy16377        474 SGML--YELPSLEVLNLSKNKIHQIEIGTF---EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLV  541 (1344)
Q Consensus       474 ~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~---~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~  541 (1344)
                      . .+  ..+++|+.|++.+|.+.......+   ..+++|+.|+|+.|.+++     ++..+..+++|+.|+|++|.++
T Consensus       244 ~-~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          244 P-LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             G-GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             H-HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            1 11  235677777777666653221111   235566666666666654     2222344566666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.36  E-value=2.8e-07  Score=90.43  Aligned_cols=101  Identities=17%  Similarity=0.244  Sum_probs=67.5

Q ss_pred             EEECCCCccc--ccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEE
Q psy16377        579 NLDASHNRIL--EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFY  656 (1344)
Q Consensus       579 ~L~Ls~N~l~--~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~  656 (1344)
                      .++.+++.++  .++ ..+|.+|+.|+|++|+|+.+.+..|..+++|+.                             ++
T Consensus        12 ~v~Cs~~~L~~~~vP-~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~-----------------------------L~   61 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TAFPVDTTELVLTGNNLTALPPGLLDALPALRT-----------------------------AH   61 (130)
T ss_dssp             EEECCSSCCCTTTSC-SCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCE-----------------------------EE
T ss_pred             EEEeCCCCCccccCC-CCCCcCCCEEECCCCcCCccChhhhhhccccCE-----------------------------EE
Confidence            5677777776  443 356667777777777777776666666655544                             55


Q ss_pred             cCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCc
Q psy16377        657 LGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYL  719 (1344)
Q Consensus       657 l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~  719 (1344)
                      +++|||.|||.+.||......        .........+.|..|..  +++.++.++...++.
T Consensus        62 L~~NP~~CdC~l~~l~~wl~~--------~~~~~~~~~~~C~~P~~--l~g~~l~~l~~~~l~  114 (130)
T 3rfe_A           62 LGANPWRCDCRLVPLRAWLAG--------RPERAPYRDLRCVAPPA--LRGRLLPYLAEDELR  114 (130)
T ss_dssp             CCSSCCBCSGGGHHHHHHHHT--------SSCSGGGTTCBCCBSTT--TTTCBGGGCCHHHHH
T ss_pred             ecCCCeeccCccHHHHHHHHh--------CcccccccCcEeCcChH--HcCCCcccCCHHHhh
Confidence            678999999999998764221        11122346788987654  455677777777775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.30  E-value=8.1e-07  Score=103.50  Aligned_cols=82  Identities=24%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             CCCCcEEEcccCCCCCCCcccc---cCCCCccEEEcCCCcCcccccc----cccCCCccceEeccccCCCChh-hHhhc-
Q psy16377        456 LQQLTDLRLVDNNIGNLSSGML---YELPSLEVLNLSKNKIHQIEIG----TFEKNKRLAAIRLDSNFLTDIN-GVFTY-  526 (1344)
Q Consensus       456 l~~L~~L~L~~n~l~~l~~~~~---~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~l~-~~~~~-  526 (1344)
                      +++|+.|+|.+|.++......+   ..+++|++|+|+.|.+......    .+..+++|+.|+|++|.+++.. ..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            4556666666555532111111   1356677777777766654222    2234567777777777766421 22222 


Q ss_pred             CCCCcEEEcCCCC
Q psy16377        527 LAQLLWLNLSENH  539 (1344)
Q Consensus       527 l~~L~~L~Ls~n~  539 (1344)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3567777766

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.00  E-value=5.8e-06  Score=86.81  Aligned_cols=65  Identities=20%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             hhcCCCCCcEEEccCC-CCC-----ccchhhcCCCCccEEEccCCCCCccCc----chhcCCCCCcEEEcccCCC
Q psy16377        405 AFKNCSALKELDLSSN-AIV-----EIPSALSELPFLKTLDLGENQISKIEN----GSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       405 ~~~~l~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l  469 (1344)
                      .+...++|++|+|++| .+.     .+...+...++|++|+|++|.+.....    ..+...++|+.|+|++|.+
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3445566666666666 554     234455556666777776666655322    2223334455555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=1.3e-06  Score=96.56  Aligned_cols=90  Identities=22%  Similarity=0.273  Sum_probs=53.9

Q ss_pred             hcCCCccce--eecccccccccC---cccccCccccceeeccccccccccC--ccccCCCCCCEEEccCCCCccccc-cc
Q psy16377        821 FNGLSSLQV--LHLENNLITHFY---GYEFDNLEKLSELYLQENRIEYIAN--GTFNALISLQVLQLDGNRLKSFRA-FD  892 (1344)
Q Consensus       821 f~~l~~L~~--L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~-~~  892 (1344)
                      |...+.|..  ++++.|+...+.   .....++++|+.|+|++|+|++++.  ..+..+++|+.|+|++|+|+.+.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            444455554  566666443332   1222456677777777777777653  445567777777777777777622 22


Q ss_pred             ccCCCCCcEEEecCCcccC
Q psy16377        893 LNTNSMLRKVYLGNNPFSC  911 (1344)
Q Consensus       893 l~~~~~L~~L~l~~Np~~C  911 (1344)
                      +..+ +|++|+|++||+.-
T Consensus       217 l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGG
T ss_pred             cccC-CcceEEccCCcCcc
Confidence            2223 77888888888643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.79  E-value=1.2e-05  Score=84.34  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=28.8

Q ss_pred             CCCCcEEEccCCCCCc-----cchhhcCCCCccEEEc--cCCCCCccCc----chhcCCCCCcEEEcccCCC
Q psy16377        409 CSALKELDLSSNAIVE-----IPSALSELPFLKTLDL--GENQISKIEN----GSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       409 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~i~~~~~----~~~~~l~~L~~L~L~~n~l  469 (1344)
                      .++|++|+|++|.+..     +...+...+.|++|+|  ++|.+.....    ..+...++|+.|+|++|.+
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            3445555555554441     3334444455555555  4455544321    2233345555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.62  E-value=1.2e-05  Score=88.79  Aligned_cols=106  Identities=20%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             CCCCCCccE--EEccCCcccccc---cchhcCCCccceeecccccccccCc--ccccCccccceeeccccccccccC-cc
Q psy16377        797 FIGRKNMLS--LYVNNSQIEVIL---NQTFNGLSSLQVLHLENNLITHFYG--YEFDNLEKLSELYLQENRIEYIAN-GT  868 (1344)
Q Consensus       797 f~~l~~L~~--L~l~~n~i~~i~---~~~f~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~N~l~~i~~-~~  868 (1344)
                      |...+.|..  ++++.|+...+.   .-...++++|+.|+|++|+|+.+.+  ..+..+++|+.|+|++|+|+++.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            444455555  667777544332   2344678999999999999999764  567789999999999999998833 34


Q ss_pred             ccCCCCCCEEEccCCCCcc-cc------cccccCCCCCcEEE
Q psy16377        869 FNALISLQVLQLDGNRLKS-FR------AFDLNTNSMLRKVY  903 (1344)
Q Consensus       869 f~~l~~L~~L~L~~N~l~~-~~------~~~l~~~~~L~~L~  903 (1344)
                      +..+ +|++|+|++|.+.. ++      ...+..+++|+.||
T Consensus       217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4444 99999999999975 32      12344566666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.35  E-value=7.8e-05  Score=76.30  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             CccEEEccCCCCCccCcchhcCCCCCcEEEcccCC-CCCCCcccccCC----CCccEEEcCCC-cCcccccccccCCCcc
Q psy16377        434 FLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN-IGNLSSGMLYEL----PSLEVLNLSKN-KIHQIEIGTFEKNKRL  507 (1344)
Q Consensus       434 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l----~~L~~L~Ls~n-~i~~~~~~~~~~l~~L  507 (1344)
                      .|+.||+++|.++...-..+.++++|+.|+|++|. +++-.-..+..+    ++|+.|+|++| +|++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555554444444555555555555553 322221222222    34556666555 2554444444555556


Q ss_pred             ceEecccc
Q psy16377        508 AAIRLDSN  515 (1344)
Q Consensus       508 ~~L~L~~n  515 (1344)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            66666555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.33  E-value=0.00016  Score=73.91  Aligned_cols=81  Identities=12%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             ceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCC-CCc-cchhhcCC----CCccEEEccCCC-CCccCcchhcCCCCC
Q psy16377        387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNA-IVE-IPSALSEL----PFLKTLDLGENQ-ISKIENGSFKNLQQL  459 (1344)
Q Consensus       387 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l----~~L~~L~Ls~n~-i~~~~~~~~~~l~~L  459 (1344)
                      .|+.|++++|.++......+.+|++|+.|+|++|. ++. --..+..+    ++|++|+|++|. +++..-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45666666665555444445556666666666653 431 11223332    346666666653 555444444555555


Q ss_pred             cEEEcccC
Q psy16377        460 TDLRLVDN  467 (1344)
Q Consensus       460 ~~L~L~~n  467 (1344)
                      +.|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=96.98  E-value=0.00019  Score=73.90  Aligned_cols=43  Identities=37%  Similarity=0.593  Sum_probs=31.3

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHH----H-hcccEEEEecc
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAA----E-ASRRVILVLTK 1126 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i----~-~srr~i~vls~ 1126 (1344)
                      +||+.||++|+|+|+||++++||..|. ..|+    + ..+++|.|+-.
T Consensus        86 ~aI~~Sr~~IvVlS~~yl~S~wc~~El-~~a~~~~~~~~~~~vIpV~~~  133 (178)
T 2j67_A           86 SFIEKSYKSIFVLSPNFVQNEWCHYEF-YFAHHNLFHENSDHIILILLE  133 (178)
T ss_dssp             HHHHTEEEEEEEECHHHHHHTGGGTHH-HHTTCC-------CEEEEESS
T ss_pred             HHHHhCCEEEEEecccccccchHHHHH-HHHHHHHHhcCCCEEEEEEec
Confidence            688999999999999999999999875 3333    2 34566666643

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=96.94  E-value=0.00047  Score=69.71  Aligned_cols=42  Identities=29%  Similarity=0.545  Sum_probs=32.1

Q ss_pred             HHHhhhheeeeeeecccc-cCCccchhH---HHHHHHhc-ccEEEEe
Q psy16377       1083 EAAEASRRVILVLTKNFL-QTEWSRSDF---LIEAAEAS-RRVILVL 1124 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~-~~~w~~~~~---i~~~i~~s-rr~i~vl 1124 (1344)
                      +||+.||++|+|+|+||+ +++||..|.   +..+++.. +++|.|.
T Consensus        63 ~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~  109 (159)
T 1t3g_A           63 RCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIE  109 (159)
T ss_dssp             HHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEE
T ss_pred             HHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence            688999999999999998 999998876   33444544 4555553

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=96.92  E-value=0.00011  Score=73.64  Aligned_cols=42  Identities=26%  Similarity=0.619  Sum_probs=32.2

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHH---HHHH-hcccEEEEe
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLI---EAAE-ASRRVILVL 1124 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~---~~i~-~srr~i~vl 1124 (1344)
                      +||+.||++|+|+|+||++++||..|.-.   ++++ ..+++|.|+
T Consensus        56 ~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~  101 (149)
T 1fyx_A           56 DSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILIL  101 (149)
T ss_dssp             HHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEE
T ss_pred             HHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEE
Confidence            68899999999999999999999987622   2334 344566666

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.44  E-value=0.0035  Score=65.35  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             cCCCCCcEEEccCC-CCC-----ccchhhcCCCCccEEEccCCCCCccCcch----hcCCCCCcEEEcccCCC
Q psy16377        407 KNCSALKELDLSSN-AIV-----EIPSALSELPFLKTLDLGENQISKIENGS----FKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       407 ~~l~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~L~~n~l  469 (1344)
                      .+-+.|++|+|++| .+.     .+.+++..-+.|+.|+|++|.+.+.....    +..-+.|+.|+|+.|.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            33455666666653 544     23445555566666666666666543322    22344455555555555

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.33  E-value=0.0035  Score=65.29  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CCCccEEEcCCC-cCcccc----cccccCCCccceEeccccCCCC-----hhhHhhcCCCCcEEEcCCCCCccccCC---
Q psy16377        480 LPSLEVLNLSKN-KIHQIE----IGTFEKNKRLAAIRLDSNFLTD-----INGVFTYLAQLLWLNLSENHLVWFDYA---  546 (1344)
Q Consensus       480 l~~L~~L~Ls~n-~i~~~~----~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~~~~~---  546 (1344)
                      -+.|+.|+|++| .|....    ..++...+.|+.|+|++|.+.+     |...+.....|+.|+|+.|.|..-...   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            344555555543 443221    1233444555555555555542     344555556666666666665432211   


Q ss_pred             ---CcCCCccEEEcCCCcCCCCCc------cccccCCCcccEEECCCCcc
Q psy16377        547 ---MVPGNLKWLDIHGNYISSLNN------YYEIKDGLSIKNLDASHNRI  587 (1344)
Q Consensus       547 ---~lp~~L~~L~Ls~n~l~~l~~------~~~l~~~~~L~~L~Ls~N~l  587 (1344)
                         ....+|+.|+|++|....++.      ...+...++|+.|+++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               112345555555432212221      11233445666666665543

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=95.96  E-value=0.0017  Score=65.69  Aligned_cols=66  Identities=24%  Similarity=0.358  Sum_probs=46.3

Q ss_pred             HHHh-hhheeeeeeecccccCCccchhHHHHHHH-----hcccEEEEecccc-------h----hhhh----hHHHHHHH
Q psy16377       1083 EAAE-ASRRVILVLTKNFLQTEWSRSDFLIEAAE-----ASRRVILVLTKNF-------L----QTEW----SRSDFRSA 1141 (1344)
Q Consensus      1083 ~~~~-~s~~~i~vls~~~~~~~w~~~~~i~~~i~-----~srr~i~vls~~f-------~----~~~w----~~~e~~~a 1141 (1344)
                      +||+ .||++|+|+|+||++++||+.|. ..|++     ..+++|.|+-...       +    .-.|    ....||..
T Consensus        66 ~~I~~~Sr~~IvVlS~~y~~S~wc~~El-~~a~~~~~~~~~~~vIpV~~~~~~~~lp~ll~~~~~~~~~~~~~~~~FW~k  144 (160)
T 2js7_A           66 ELIEKRCRRMVVVVSDDYLQSKECDFQT-KFALSLSPGAHQKRLIPIKYKAMKKEFPSILRFITVCDYTNPCTKSWFWTR  144 (160)
T ss_dssp             GGHHHHEEEEEEECCHHHHHSHHHHHHH-HHHHHHCTTHHHHTEEEEESSCCCCCCCTTTSCSSCEETTCTTTCSSHHHH
T ss_pred             HHHHHhCCEEEEEECcchhcCHHHHHHH-HHHHHHHHccCCCEEEEEEEcccchhhHHHHhceEEEECCCCCCChHHHHH
Confidence            6888 79999999999999999998765 33333     2456777663221       1    1224    44678888


Q ss_pred             HHHHHhcC
Q psy16377       1142 IHEALTTK 1149 (1344)
Q Consensus      1142 ~~~~l~~~ 1149 (1344)
                      ++.+|...
T Consensus       145 L~~al~~~  152 (160)
T 2js7_A          145 LAKALSLP  152 (160)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHcCCc
Confidence            88888764

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=95.91  E-value=0.00056  Score=68.04  Aligned_cols=41  Identities=27%  Similarity=0.470  Sum_probs=31.7

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHHHh----cccEEEEe
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAEA----SRRVILVL 1124 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~~----srr~i~vl 1124 (1344)
                      +||+.||++|+|+|+||++++||+.|. ..|++.    .+|+|.|+
T Consensus        60 ~aI~~Sr~~I~VlS~~y~~S~wc~~El-~~al~~~~~~~~~vIpv~  104 (146)
T 3ub2_A           60 QALSSSHCRVLLITPGFLQDPWCKYQM-LQALTEAPGAEGCTIPLL  104 (146)
T ss_dssp             CTTCCEEEEEEEECHHHHHCHHHHHHH-HHHHHTSSSSSSEEEEEE
T ss_pred             HHHHhCCEEEEEECcccccCHHHHHHH-HHHHHHHhhcCCcEEEEE
Confidence            578999999999999999999998765 444443    34666555

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=93.84  E-value=0.029  Score=58.05  Aligned_cols=42  Identities=19%  Similarity=0.544  Sum_probs=31.6

Q ss_pred             HHHhhhheeeeeeecccccCCccchhH--HHHHHHh-cccEEEEe
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEA-SRRVILVL 1124 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~-srr~i~vl 1124 (1344)
                      +||+.||..|+|+|+||..+.||..|-  |.++.+. .+++|+-|
T Consensus        85 ~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPI  129 (204)
T 3ozi_A           85 RAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPI  129 (204)
T ss_dssp             HHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCE
T ss_pred             HHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEE
Confidence            789999999999999999999998865  4444443 23444433

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=93.35  E-value=0.05  Score=55.27  Aligned_cols=49  Identities=14%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             HHHhhhheeeeeeecccccCCccchhH--HHHHHHhcccEEEEe----cccchhh
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDF--LIEAAEASRRVILVL----TKNFLQT 1131 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~--i~~~i~~srr~i~vl----s~~f~~~ 1131 (1344)
                      +||+.||..|+|+|+||..+.||..|-  |.++.+...++|+-|    .|.-++.
T Consensus        58 ~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~  112 (176)
T 3jrn_A           58 SPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRW  112 (176)
T ss_dssp             -CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHH
T ss_pred             HHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhh
Confidence            578899999999999999999998875  445555445555554    4554543

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=91.59  E-value=0.043  Score=55.04  Aligned_cols=32  Identities=25%  Similarity=0.479  Sum_probs=26.2

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHHHHH
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIEAAE 1115 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~~i~ 1115 (1344)
                      +|++.|+.+|+|+|+||+++.||..|. ..+++
T Consensus        69 ~ai~~s~~~i~v~S~~y~~S~wc~~El-~~~~~  100 (154)
T 3h16_A           69 KGLGSSRFGIVVLSTHFFKKEWPQKEL-DGLFQ  100 (154)
T ss_dssp             HHHTSEEEEEEEEEHHHHTTCCCHHHH-HHHTC
T ss_pred             HHHHhCcEEEEEeCcchhcChHHHHHH-HHHHH
Confidence            467889999999999999999999754 44443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.93  E-value=0.23  Score=45.53  Aligned_cols=50  Identities=20%  Similarity=0.377  Sum_probs=34.9

Q ss_pred             CCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeeccccc
Q psy16377        786 GNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNL  836 (1344)
Q Consensus       786 ~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~  836 (1344)
                      |..++.|...+|.++.+|+.+.|-. .++.|...+|.+|.+|+.+.+....
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            4556677777777777777777765 3667777777777777777776544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=88.55  E-value=0.52  Score=43.09  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             CcccccccchhcCCCccceeecccccccccCcccccCccccceeecccc
Q psy16377        811 SQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN  859 (1344)
Q Consensus       811 n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  859 (1344)
                      ..++.|...+|.++++|+.+.|-. .++.|....|.++.+|+.+.+...
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence            345555566666666666665554 255555555555555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1344
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-26
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-22
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-06
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	5e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-18
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-16
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-13
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-12
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-09
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	9e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-09
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1cyga1	83	b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotran	0.002
d3bmva1	83	b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotran	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  107 bits (266), Expect = 9e-26
 Identities = 75/323 (23%), Positives = 137/323 (42%), Gaps = 30/323 (9%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
            LR++  S   L  +     +        L L+NN+I++I    F  L +L  L + +N 
Sbjct: 11  HLRVVQCSDLGLEKVP--KDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 66

Query: 252 LVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI 311
           +  +  G F+    +  +Y  KN L EL   +   L++   L +  N ++         +
Sbjct: 67  ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE---LRVHENEITKVRKSVFNGL 123

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
             + ++ L  +  + + I+   F+ +  L  + + + +I  I      SL  LH   L  
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDG 180

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N+I  + A    GL  L+KL LS N +  +D+ +  N   L+EL L++N +V++P  L++
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
             +++ + L  N IS I +  F                     G   +  S   ++L  N
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDF------------------CPPGYNTKKASYSGVSLFSN 282

Query: 492 KIHQIEI--GTFEKNKRLAAIRL 512
            +   EI   TF      AA++L
Sbjct: 283 PVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.0 bits (240), Expect = 3e-22
 Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 13/277 (4%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
           ++  S+  L ++      D      LDL+NN I  I+D  F +L NLHT+ L  N+I  I
Sbjct: 14  VVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKT 437
           +   F  L  L +L LS N L  +  K  K    L+  +     + +          +  
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 438 LDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIE 497
           L     + S IENG+F+ +++L+ +R+ D NI  +  G+    PSL  L+L  NKI +++
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVD 187

Query: 498 IGTFEKNKRLAAIRLDSNF-LTDINGVFTYLAQLLWLNLSENHLVWFDYAMV-PGNLKWL 555
             + +    LA + L  N      NG       L  L+L+ N LV     +     ++ +
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247

Query: 556 DIHGNYISSLNN-----YYEIKDGLSIKNLDASHNRI 587
            +H N IS++ +             S   +    N +
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.8 bits (229), Expect = 7e-21
 Identities = 57/262 (21%), Positives = 103/262 (39%), Gaps = 17/262 (6%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
             +L+L NN++T I    FK+L  L  L L NN I  I   AF  L  L  +YLS+N++ 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE---IPSALSEL 432
            +   +      L +L +  N +  +    F   + +  ++L +N +        A   +
Sbjct: 93  ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 433 PFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNK 492
             L  + + +  I+ I  G   +L +   L L  N I  + +  L  L +L  L LS N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 493 IHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG-- 550
           I  ++ G+      L  + L++N L  + G       +  + L  N++            
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 551 ------NLKWLDIHGNYISSLN 566
                 +   + +  N +    
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.8 bits (216), Expect = 3e-19
 Identities = 65/295 (22%), Positives = 114/295 (38%), Gaps = 21/295 (7%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
              L+ VP  L    +  +L++ ++ I  I D  F +L N+ TL L  N I  I    FA
Sbjct: 19  DLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 172 ----VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYS-GITKFRRLQNLHLENN 226
               + R     N  +++       L+ L +  N++  +            +  L     
Sbjct: 77  PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 227 EISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHK 286
           + S I   AF  +  L  + I+  ++ ++P+GL  S     E++   N + ++       
Sbjct: 137 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKG 193

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           L  L  L LS N +S+             L  L+L+NN+L         D  ++Q + L 
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANT--PHLRELHLNNNKL-VKVPGGLADHKYIQVVYLH 250

Query: 347 NNSIGYIEDNAF------LSLYNLHTIYLSENRIHHITAH--LFNGLYVLSKLTL 393
           NN+I  I  N F          +   + L  N + +       F  +YV + + L
Sbjct: 251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.7 bits (182), Expect = 7e-15
 Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 11/169 (6%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C      +  VV CS+  +  VP  +P D   + L  N    I +  F   KN+
Sbjct: 4   CPFRCQC------HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNL 57

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
            +L + N++I  I    F  L  L+ L+L  N +          L+   EL + EN I  
Sbjct: 58  HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITK 114

Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM--LRKVYLGNNPFS 910
           +    FN L  + V++L  N LKS    +     M  L  + + +   +
Sbjct: 115 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.4 bits (176), Expect = 5e-14
 Identities = 64/339 (18%), Positives = 127/339 (37%), Gaps = 55/339 (16%)

Query: 34  GSNLSFVPTDLITKL-NIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVELPVDVFS 92
              L  VP DL      +D     +  + I    F+N+ +L  L + N K+ ++    F+
Sbjct: 19  DLGLEKVPKDLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 93  GLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANI 152
            L  L+RL ++   L+         +P  +   + LQ L +  + I  +   VF  L  +
Sbjct: 77  PLVKLERLYLSKNQLKE--------LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 153 QTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGI 212
             + L  N ++       A                 G   L  + ++   + T+      
Sbjct: 127 IVVELGTNPLKSSGIENGA---------------FQGMKKLSYIRIADTNITTIPQGL-- 169

Query: 213 TKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQ 272
                L  LHL+ N+I+++   +   L++L  L +S N + ++  G  ++   + E++  
Sbjct: 170 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 273 KNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAK 332
            N LV++  GL    + + V+ L +N++S+  I    F                      
Sbjct: 228 NNKLVKVPGGLAD-HKYIQVVYLHNNNISA--IGSNDFCPP------------------G 266

Query: 333 TFKDLVFLQRLDLRNNSIGY--IEDNAFLSLYNLHTIYL 369
                     + L +N + Y  I+ + F  +Y    + L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 59/273 (21%), Positives = 104/273 (38%), Gaps = 31/273 (11%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
            C  L+ +  S   + ++P  L   P    LDL  N+I++I++G FKNL           
Sbjct: 9   QCH-LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNL----------- 54

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
                         +L  L L  NKI +I  G F    +L  + L  N L ++       
Sbjct: 55  -------------KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT 101

Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGL-SIKNLDASHNR 586
            Q L ++ +E   V          +  +++  N + S         G+  +  +  +   
Sbjct: 102 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 161

Query: 587 ILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
           I  I +  +P S+  L ++ N I  V   +    +NLA++ +  N I+ +D  +L   P 
Sbjct: 162 ITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 647 PQNKTLPEFYLGGNPFDCD--CSMDWLPIINNN 677
            +   L    L   P        +  + + NNN
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 52/320 (16%), Positives = 104/320 (32%), Gaps = 48/320 (15%)

Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
            ++ +  S   + ++ +  +P    +L + NN I  +K   F +  NL  + +  N I+K
Sbjct: 11  HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 636 LDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNV 695
           +   A           L   YL  N                     M +   ++   +N 
Sbjct: 70  ISPGAFA-----PLVKLERLYLSKNQLK-------------ELPEKMPKTLQELRVHENE 111

Query: 696 VCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQN 755
           + K+  S                          L      +     +      +      
Sbjct: 112 ITKVRKS----------------------VFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 756 WNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV 815
              + +  ++  I+T+P  +P   T ++LDGN    +      G  N+  L ++ + I  
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209

Query: 816 ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFN----- 870
           + N +      L+ LHL NN +         + + +  +YL  N I  I +  F      
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLVKVP-GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN 268

Query: 871 -ALISLQVLQLDGNRLKSFR 889
               S   + L  N ++ + 
Sbjct: 269 TKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 4e-07
 Identities = 45/291 (15%), Positives = 91/291 (31%), Gaps = 20/291 (6%)

Query: 548 VPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPN--SVEVLFIN 605
           +P +   LD+  N I+ + +  + K+  ++  L   +N+I +IS  +      +E L+++
Sbjct: 29  LPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 606 NNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNP--FD 663
            N +K +          L   +     + K     L    V +  T P    G     F 
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 664 CDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGST--HLPASEAAPSQYLCP 721
               + ++ I + N +   +   P + +L     K+T    ++   L         +   
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 722 YDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATH 781
             +   +L +                       +    VV      IS +          
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGS-------- 259

Query: 782 VYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHL 832
                N F     +      + +SL+ N  Q   I   TF  +     + L
Sbjct: 260 -----NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 9e-06
 Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 8/171 (4%)

Query: 763 CSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI--LNQT 820
            S+ Q+  +P ++P     + +  N    +   VF G   M+ + +  + ++     N  
Sbjct: 86  LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 821 FNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQL 880
           F G+  L  + + +  IT        +L    EL+L  N+I  +   +   L +L  L L
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 881 DGNRLKSFRAFDLNTNSMLRKVYLGNN---PFSCSCATLQELQTWIIDNSN 928
             N + +     L     LR+++L NN         A  + +Q   + N+N
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.7 bits (227), Expect = 5e-22
 Identities = 32/170 (18%), Positives = 62/170 (36%), Gaps = 43/170 (25%)

Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
            +D  +V   +V ELE+ NP ++LCLH RD  H    +                       
Sbjct: 15   RDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNI-------------------- 54

Query: 1096 TKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVL 1155
                           I++ E S + + VL++NF+++EW + +   +            +L
Sbjct: 55   ---------------IDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAIL 99

Query: 1156 V---EENIVPEAESDIELKPYLKSCMKIRW-----GEKRFWERLRYAMPT 1197
            +           +   +L+  + +   + W       + FW  LR A+ +
Sbjct: 100  ILLEPIEKKAIPQRFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIKS 149

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 7e-19
 Identities = 78/364 (21%), Positives = 133/364 (36%), Gaps = 36/364 (9%)

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
           S   L ++  L      IKSI       L N+  +N S N + DI  L    +      N
Sbjct: 39  SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 96

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
           + +  + +   +L  L         + D   +     L  L L +N IS I+  + +   
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 241 SLRILNISSNHLVSL-----------------PEGLFSSCRDISEIYAQKNSLVELSRGL 283
                      L  L                    + +   ++  + A  N + +++   
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 284 FHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL 343
                 L  L L+ N L     D  T   L  L  L+L+NN+++ +       L  L  L
Sbjct: 217 ILT--NLDELSLNGNQLK----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 268

Query: 344 DLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS 403
            L  N I  I   A L+      +  ++       ++L N    L+ LTL  N + +I  
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKN----LTYLTLYFNNISDISP 324

Query: 404 KAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLR 463
               + + L+ L  ++N + ++ S L+ L  +  L  G NQIS +      NL ++T L 
Sbjct: 325 --VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLT--PLANLTRITQLG 379

Query: 464 LVDN 467
           L D 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 7e-18
 Identities = 77/397 (19%), Positives = 131/397 (32%), Gaps = 60/397 (15%)

Query: 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
             L E     +  +N+          L  + TL   R  I+ ID + +            
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN--------- 67

Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
                     L  ++ S+N+L  +     +TK   +   + +  +I+ +A    +   +L
Sbjct: 68  ----------LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEI--------YAQKNSLVELSRGLFHKLEQLLVLD 294
               I+    +     L       + I              L   ++    K    L   
Sbjct: 118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 177

Query: 295 LSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIE 354
              +  S+   D +    L  L  L  +NN+++ I          L  L L  N +  I 
Sbjct: 178 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIG 235

Query: 355 DNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS----------- 403
                SL NL  + L+ N+I ++     +GL  L++L L  N + NI             
Sbjct: 236 --TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 404 ---------KAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFK 454
                        N   L  L L  N I +I   +S L  L+ L    N++S +   S  
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS--SLA 348

Query: 455 NLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           NL  +  L    N I +L+   L  L  +  L L+  
Sbjct: 349 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 7e-14
 Identities = 77/364 (21%), Positives = 136/364 (37%), Gaps = 23/364 (6%)

Query: 206 LGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP--------E 257
           + D    T   ++  L  +   I  I  +    L++L  +N S+N L  +          
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITPLKNLTKLV 91

Query: 258 GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
            +  +   I++I    N        LF+     +    +  +L+   +   T   +  L 
Sbjct: 92  DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS 151

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSI-GYIEDNAFLSLYNLHTIYLSENRIHH 376
            L               K L  L  L+  + S     + +    L NL ++  + N+I  
Sbjct: 152 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD 211

Query: 377 ITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLK 436
           IT         L +L+L+ N L +I +    + + L +LDL++N I  +   LS L  L 
Sbjct: 212 ITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLT 266

Query: 437 TLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQI 496
            L LG NQIS I       L  LT+L L +N + +     +  L +L  L L  N I  I
Sbjct: 267 ELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI 322

Query: 497 EIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLD 556
                    +L  +   +N ++D++     L  + WL+   N +           +  L 
Sbjct: 323 S--PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLG 379

Query: 557 IHGN 560
           ++  
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 1e-12
 Identities = 78/358 (21%), Positives = 128/358 (35%), Gaps = 54/358 (15%)

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           L+Q+  L      + S  ID   +  L  L  +N SNN+LT I     K+L  L  + + 
Sbjct: 43  LDQVTTLQADRLGIKS--IDGVEY--LNNLTQINFSNNQLTDITP--LKNLTKLVDILMN 96

Query: 347 NNSIGYIEDNAFL---------------------------------SLYNLHTIYLSENR 373
           NN I  I   A L                                 ++ ++  +    + 
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 374 IHHITAHLFNGLYVLSKLT----LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL 429
                 +    L  L+ LT    L  +     D       + L+ L  ++N I +I    
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 430 SELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
                L  L L  NQ+  I  G+  +L  LTDL L +N I NL+   L  L  L  L L 
Sbjct: 217 IL-TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271

Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N+I  I                 +    +     + L  L +L L  N++         
Sbjct: 272 ANQISNISPLAGLTALT---NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 328

Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNN 607
             L+ L    N +S ++    + +  +I  L A HN+I +++ L+    +  L +N+ 
Sbjct: 329 TKLQRLFFANNKVSDVS---SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 8e-12
 Identities = 60/354 (16%), Positives = 125/354 (35%), Gaps = 35/354 (9%)

Query: 57  LLDSSITT-KSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTIN------------ 103
                I +    + + +L ++  SN +L ++       L  L  + +N            
Sbjct: 51  ADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLAN 108

Query: 104 -TRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI 162
            T                 L  L  L  L +SS+ I  IS     +     +       +
Sbjct: 109 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 168

Query: 163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLH 222
           + +  L    R   + +   +    +   +L  L  ++N++  +   + +     L  L 
Sbjct: 169 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI---TPLGILTNLDELS 225

Query: 223 LENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRG 282
           L  N++  I      +L++L  L++++N + +L     S    ++E+    N +  +S  
Sbjct: 226 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 280

Query: 283 LFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQR 342
                   L    +     +   D +    L  L  L L  N ++ I       L  LQR
Sbjct: 281 -----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 333

Query: 343 LDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
           L   NN +  +   +  +L N++ +    N+I  +T      L  +++L L++ 
Sbjct: 334 LFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 5e-10
 Identities = 48/364 (13%), Positives = 101/364 (27%), Gaps = 31/364 (8%)

Query: 563 SSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSN 622
           +++ +     D   +  L A    I  I  +   N++  +  +NN +  + P    + + 
Sbjct: 32  TNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTK 89

Query: 623 LARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSM 682
           L  + +  N I  +   A             +        +           N  +  S 
Sbjct: 90  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 149

Query: 683 ERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEM 742
                 +  L            +          S            L +     A + ++
Sbjct: 150 LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 743 TCPKNCSCFHD------------------QNWNTNVVDCSEQQISTVPPRIPMDA-THVY 783
           +         +                     N   +D +  QIS + P   +   T + 
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 269

Query: 784 LDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGY 843
           L  N    I     +     L L  N  +         + L +L  L L  N I+     
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDI--S 323

Query: 844 EFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVY 903
              +L KL  L+   N++  ++  +   L ++  L    N++         T   + ++ 
Sbjct: 324 PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTPLANLTR--ITQLG 379

Query: 904 LGNN 907
           L + 
Sbjct: 380 LNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.9 bits (141), Expect = 2e-09
 Identities = 72/382 (18%), Positives = 128/382 (33%), Gaps = 51/382 (13%)

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
            L   +   L    +T  D  +  DL  +  L      I  I+   +L+  NL  I  S 
Sbjct: 20  ALAEKMKTVLGKTNVT--DTVSQTDLDQVTTLQADRLGIKSIDGVEYLN--NLTQINFSN 75

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N++  IT      L  L  + ++NN + +I   A         L  +    ++    L+ 
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLY------------- 478
           L  L+      + IS +   +        +       + NL++                 
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 479 -ELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSE 537
            +L +LE L  + N+I  I       N  L  + L+ N L DI G    L  L  L+L+ 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKDI-GTLASLTNLTDLDLAN 250

Query: 538 NHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLS-------------------IK 578
           N +           L  L +  N IS+++    +    +                   + 
Sbjct: 251 NQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 310

Query: 579 NLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDL 638
            L    N I +IS +S    ++ LF  NN +      +  + +N+  +    N I+ L  
Sbjct: 311 YLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT- 367

Query: 639 TALRLKPVPQNKTLPEFYLGGN 660
                 P+     + +  L   
Sbjct: 368 ------PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 4e-08
 Identities = 58/430 (13%), Positives = 122/430 (28%), Gaps = 66/430 (15%)

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
              +   +  L    + +  S  ++L  + TL      I  I+    + L  LT +   +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 75

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
           N + +++   L  L  L  + ++ N+I  I       N     +  +     D     T 
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586
           L +L   + + + +           L + +   +     N     +        D S N+
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL-------DISSNK 186

Query: 587 ILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPV 646
           + +IS L+   ++E L   NN I  + P      +NL  + +  N +  +         +
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIG-------TL 237

Query: 647 PQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGST 706
                L +  L  N                 ++ +      K+ +L              
Sbjct: 238 ASLTNLTDLDLANNQI---------------SNLAPLSGLTKLTELK------------- 269

Query: 707 HLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQ 766
                       L    I   +                            N   +     
Sbjct: 270 ------------LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 317

Query: 767 QISTVPPRIPMDA-THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLS 825
            IS + P   +     ++   N    + +       N+  L   ++QI  +       L+
Sbjct: 318 NISDISPVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLT 373

Query: 826 SLQVLHLENN 835
            +  L L + 
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 7e-05
 Identities = 47/302 (15%), Positives = 94/302 (31%), Gaps = 33/302 (10%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISK 447
           ++ L      + +ID    +  + L +++ S+N + +I   L  L  L  + +  NQI+ 
Sbjct: 46  VTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIAD 102

Query: 448 IENGSFKNLQQLTDLRLVDNNIGNLSSGMLY---------ELPSLEVLNLSKNKIHQIEI 498
           I   +         L        +    +            +  +  L+   +       
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 499 GTFEKNKRLAAIRLDSNFLTDINGVFTY-----LAQLLWLNLSENHLVWFDYAMVPGNLK 553
                 K LA +          N V        L  L  L  + N +       +  NL 
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 222

Query: 554 WLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVK 613
            L ++GN +  +     +    ++ +LD ++N+I  ++ LS    +  L +  N I ++ 
Sbjct: 223 ELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 614 PHTFFDKSNL----------ARVDIYANDITKLDLTALRLK---PVPQNKTLPEFYLGGN 660
           P                           ++T L L    +    PV     L   +   N
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN 339

Query: 661 PF 662
             
Sbjct: 340 KV 341

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (206), Expect = 4e-18
 Identities = 66/281 (23%), Positives = 101/281 (35%), Gaps = 9/281 (3%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILN 246
           C     +         L+ +    GI      Q + L  N IS +   +F A  +L IL 
Sbjct: 8   CYNEPKVTT-SCPQQGLQAVP--VGI--PAASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 247 IS-SNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
           +  +                     +    L  +    FH L +L  L L         +
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG--LQEL 120

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
               F GL  L  L L +N L  +   TF+DL  L  L L  N I  + + AF  L++L 
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEI 425
            + L +NR+ H+  H F  L  L  L L  N L  + ++A     AL+ L L+ N  V  
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240

Query: 426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
             A     +L+      +++           + L  L   D
Sbjct: 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 1e-14
 Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 28/195 (14%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKN- 802
           CP  C C+++         C +Q +  VP  IP  +  ++L GN    +P   F   +N 
Sbjct: 2   CPGACVCYNEPK---VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58

Query: 803 ------------------------MLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
                                         +N+Q+  +   TF+GL  L  LHL+   + 
Sbjct: 59  TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
                 F  L  L  LYLQ+N ++ + + TF  L +L  L L GNR+ S           
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 899 LRKVYLGNNPFSCSC 913
           L ++ L  N  +   
Sbjct: 179 LDRLLLHQNRVAHVH 193

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 2e-11
 Identities = 51/272 (18%), Positives = 91/272 (33%), Gaps = 30/272 (11%)

Query: 319 LNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHIT 378
            +     L  +           QR+ L  N I ++   +F +  NL  ++L  N +  I 
Sbjct: 16  TSCPQQGLQAVPVGIPAAS---QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 379 AHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTL 438
           A  F                               +L  ++      P+    L  L TL
Sbjct: 73  AAAFT----------------------GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110

Query: 439 DLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEI 498
            L    + ++  G F+ L  L  L L DN +  L      +L +L  L L  N+I  +  
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170

Query: 499 GTFEKNKRLAAIRLDSNFLTDIN-GVFTYLAQLLWLNLSENHLVWFDYAMV--PGNLKWL 555
             F     L  + L  N +  ++   F  L +L+ L L  N+L       +     L++L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230

Query: 556 DIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
            ++ N          +     ++    S + +
Sbjct: 231 RLNDNPWVCDCRARPLWA--WLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 2e-11
 Identities = 64/318 (20%), Positives = 107/318 (33%), Gaps = 51/318 (16%)

Query: 130 VLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSG 189
             +     ++++   +    A  Q + L  N I  +    F                   
Sbjct: 15  TTSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASF-----------------RA 54

Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISS 249
             +L IL L  N L  +   +        Q    +N ++  + P  F  L  L  L++  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 250 NHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETT 309
             L  L  GLF     +  +Y Q N+L  L    F  L                      
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-------------------- 154

Query: 310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYL 369
                 L  L L  N ++ +  + F+ L  L RL L  N + ++  +AF  L  L T+YL
Sbjct: 155 ------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 370 SENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSA 428
             N +  +       L  L  L L++N     D +A    + L++   SS+ +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPW-VCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267

Query: 429 LSELPFLKTLDLGENQIS 446
           L+         L  N + 
Sbjct: 268 LAGRDL---KRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 6e-11
 Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 4/225 (1%)

Query: 719 LCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMD 778
           +                 +           +            +   + +          
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 779 ATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLIT 838
              ++LD    + +   +F G   +  LY+ ++ ++ + + TF  L +L  L L  N I+
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 839 HFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSM 898
                 F  L  L  L L +NR+ ++    F  L  L  L L  N L +     L     
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 899 LRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES 943
           L+ + L +NP+ C C   + L  W+           ++ C + + 
Sbjct: 227 LQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSS---EVPCSLPQR 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 5e-10
 Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 30/267 (11%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
                         +  +P  +      + + L  N+IS +   SF+  + LT L L  N
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN 66

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
            +                             G     +   +       +          
Sbjct: 67  VL--------------------ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106

Query: 528 AQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRI 587
              L L+      +          L++L +  N + +L +    +D  ++ +L    NRI
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT-FRDLGNLTHLFLHGNRI 165

Query: 588 LEISELSIPN--SVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
             + E +     S++ L ++ N +  V PH F D   L  + ++AN+++ L       + 
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-----PTEA 220

Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWLP 672
           +   + L    L  NP+ CDC    L 
Sbjct: 221 LAPLRALQYLRLNDNPWVCDCRARPLW 247

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 12/148 (8%)

Query: 61  SITTKSFQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPG 120
           ++   +F+++ +L  L +   ++  +P   F GL +L RL ++             + P 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-------VAHVHPH 195

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIR-DIDTLGFAVRRASAES 179
           +   L  L  L + ++N+ ++  +    L  +Q L L+ N    D               
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFR 254

Query: 180 NSGEKIECSGGMDLR---ILDLSHNKLR 204
            S  ++ CS    L    +  L+ N L+
Sbjct: 255 GSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-16
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 45/170 (26%)

Query: 1036 KDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVL 1095
             D  +V   ++  LE      Q+CLH R+                               
Sbjct: 22   HDSFWVKNELLPNLE--KEGMQICLHERNFVPGKSI------------------------ 55

Query: 1096 TKNFLQTEWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVL 1155
                        + +I   E S + I VL+ NF+Q+EW   +   A H      ++ L+L
Sbjct: 56   -----------VENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLIL 104

Query: 1156 VEENIVPEAE---SDIELKPYLKSCMKIRWGE-----KRFWERLRYAMPT 1197
            +    +P+     S  +LK  +     + W +       FW  LR A+  
Sbjct: 105  ILLEPIPQYSIPSSYHKLKSLMARRTYLEWPKEKSKRGLFWANLRAAINI 154

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 43/237 (18%), Positives = 79/237 (33%), Gaps = 49/237 (20%)

Query: 748 CSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLY 807
           C     +  +   V+C ++ ++ +PP +P D T ++L  N   T      +    +  L 
Sbjct: 4   CEV--SKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 808 VNNSQ---------------------------------------------IEVILNQTFN 822
           ++ ++                                             +  +      
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 823 GLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDG 882
           GL  LQ L+L+ N +            KL +L L  N +  +  G  N L +L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 883 NRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCV 939
           N L +        + +L   +L  NP+ C+C  +   + W+ DN+  V        V
Sbjct: 182 NSLYTIPK-GFFGSHLLPFAFLHGNPWLCNCE-ILYFRRWLQDNAENVYVWKQGVDV 236

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 4e-11
 Identities = 44/205 (21%), Positives = 77/205 (37%), Gaps = 8/205 (3%)

Query: 239 LSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSN 298
           ++S   +N    +L +LP  L    +D + ++  +N L   S        +L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 299 HLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
            L+   +D T     + ++     ++   +      + L  L  LD+  N +  +   A 
Sbjct: 66  ELTKLQVDGT-----LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
             L  L  +YL  N +  +   L      L KL+L+NN L  + +        L  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 419 SNAIVEIPSALSELPFLKTLDLGEN 443
            N++  IP        L    L  N
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 2e-10
 Identities = 46/266 (17%), Positives = 81/266 (30%), Gaps = 55/266 (20%)

Query: 406 FKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLV 465
               ++  E++     +  +P  L        L L EN +      +     +LT L L 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL- 62

Query: 466 DNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFT 525
            +        +   LP L  L+LS N++  + +               +   +   G   
Sbjct: 63  -DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 526 YLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN 585
            L +L  L L  N L        PG L           + NN  E+  G           
Sbjct: 122 GLGELQELYLKGNELKTLP----PGLLTPTPKLEKLSLANNNLTELPAG----------- 166

Query: 586 RILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKP 645
                  L+   +++ L +  N + ++ P  FF                           
Sbjct: 167 ------LLNGLENLDTLLLQENSLYTI-PKGFFG-------------------------- 193

Query: 646 VPQNKTLPEFYLGGNPFDCDCSMDWL 671
              +  LP  +L GNP+ C+C + + 
Sbjct: 194 ---SHLLPFAFLHGNPWLCNCEILYF 216

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 40/211 (18%), Positives = 66/211 (31%), Gaps = 10/211 (4%)

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
           E S       ++     L  L     +   +    LHL  N +   +    +  + L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTAL--PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
           N+    L             +  +     S  +L            +  L  +      +
Sbjct: 61  NLDRAELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
                 GL  L  L L  NEL  +          L++L L NN++  +       L NL 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLTLSNN 396
           T+ L EN ++ I    F   ++L    L  N
Sbjct: 176 TLLLQENSLYTIPKGFFG-SHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 6e-07
 Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 6/190 (3%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNS---IRDIDTL 168
            + L  +P  L   ++  +L++S + + + S         +  LNL R     ++   TL
Sbjct: 19  KRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL 76

Query: 169 GFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEI 228
                   + +           +    +        T      +     LQ L+L+ NE+
Sbjct: 77  PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 229 SQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLE 288
             + P        L  L++++N+L  LP GL +   ++  +  Q+NSL  + +G F    
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSH 195

Query: 289 QLLVLDLSSN 298
            L    L  N
Sbjct: 196 LLPFAFLHGN 205

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 63.7 bits (153), Expect = 7e-12
 Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C C          VDC+ + +  +P  IP+  T + L+ N    I +    GR   
Sbjct: 2   CPAMCHC------EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH 55

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLH-LENNLITHFYGYEFDNLEKLSELYLQENRIE 862
           L            +       +S      L  N I       F  L +L  L L +N+I 
Sbjct: 56  LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115

Query: 863 YIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTW 922
            +  G+F  L SL  L L  N              + +K   G      + + ++++Q  
Sbjct: 116 CVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIK 175

Query: 923 IIDNSN 928
            + +S 
Sbjct: 176 DLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 108 QWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDT 167
           Q  ++K  ++      GL +L+ LN+  + I  +    F  L ++ +LNL+ N       
Sbjct: 84  QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143

Query: 168 LGFAVRRASAESNSGEKIECSGGMDLR---ILDLSHNKLR 204
           L +       +S +G    C     +R   I DL H++ +
Sbjct: 144 LAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 8/180 (4%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
               ++ +   L  +P  +       +E+    N L  +S          LV      + 
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 301 SSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLS 360
            +                L L  N++  I  K F  L  L+ L+L +N I  +   +F  
Sbjct: 66  LTGIEPNAFEGASHI-QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

Query: 361 LYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN 420
           L +L ++    +   +   HL      L K +L+            ++   ++  DL  +
Sbjct: 125 LNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHS 180

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.6 bits (136), Expect = 4e-10
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHI 377
           +L+L++ +LT +     + L+ +  LDL +N +  +      +L  L  +  S+N + ++
Sbjct: 2   VLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58

Query: 378 TAHLFNGLYVLSKLTLSNNLLVNIDS-KAFKNCSALKELDLSSNAIVEIP----SALSEL 432
                     L +L L NN L    + +   +C  L  L+L  N++ +           L
Sbjct: 59  DGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

Query: 433 PFLKTL 438
           P + ++
Sbjct: 117 PSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 413 KELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNL 472
           + L L+   +  +   L +L  +  LDL  N++  +   +   L+ L  L+  DN + N+
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENV 58

Query: 473 SSGMLYELPSLEVLNLSKNKIHQIE-IGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLL 531
                      + L L  N++ Q   I       RL  + L  N L    G+   LA++L
Sbjct: 59  DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 3e-08
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN 450
           L L++  L  +     +    +  LDLS N +  +P AL+ L  L+ L   +N +  ++ 
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 59

Query: 451 GSFKNLQQLTDLRLVDNNIGNLSS-GMLYELPSLEVLNLSKNKIHQIE 497
               NL +L +L L +N +   ++   L   P L +LNL  N + Q E
Sbjct: 60  -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 9/124 (7%)

Query: 129 QVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRD----IDTLGFAVRRASAESNSGEK 184
           +VL+++  ++  +       L  +  L+LS N +R     +  L       ++++     
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 185 IECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA---PNAFVALSS 241
              +    L+ L L +N+L+       +    RL  L+L+ N + Q           L S
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 242 LRIL 245
           +  +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 221 LHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS 280
           LHL + +++ +       L  +  L++S N L +LP  L +         +         
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRID 330
                +L++L    L +N L  +   +   +   RL++LNL  N L + +
Sbjct: 61  VANLPRLQEL---LLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 485 VLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFD 544
           VL+L+   +  +     E+   +  + L  N L  +      L  L  L  S+N L   D
Sbjct: 2   VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 545 YAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISEL 593
                  L+ L +  N +        +     +  L+   N + +   +
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 29/151 (19%), Positives = 46/151 (30%), Gaps = 32/151 (21%)

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
           R+L+++   L  L                              +L  +  LDLS N L +
Sbjct: 1   RVLHLAHKDLTVLCH--------------------------LEQLLLVTHLDLSHNRLRA 34

Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIED-NAFLSL 361
                     L  L +L  S+N L  +D         LQ L L NN +         +S 
Sbjct: 35  LP---PALAALRCLEVLQASDNALENVDGVANLP--RLQELLLCNNRLQQSAAIQPLVSC 89

Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLT 392
             L  + L  N +            +L  ++
Sbjct: 90  PRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 436 KTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQ 495
           + L L    ++ + +   + L  +T L L  N +  L    L  L  LEVL  S N +  
Sbjct: 1   RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 496 IEIGTFEKNKRLAAIRLDSNFLTDINGV--FTYLAQLLWLNLSENHL 540
           ++        +   + L +N L     +       +L+ LNL  N L
Sbjct: 58  VDGVANLPRLQE--LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 60.6 bits (145), Expect = 5e-10
 Identities = 40/315 (12%), Positives = 91/315 (28%), Gaps = 16/315 (5%)

Query: 576 SIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITK 635
               L+ ++  +  + EL  P  +E L  + N +  +         +L  + +  N++  
Sbjct: 39  QAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLKA 92

Query: 636 LDL--TALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLD 693
           L      L    V  N+      L  + F     +D   +      P          +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 694 NVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHD 753
             + ++      T + A   +  +           +      +        P   + + D
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 754 QNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQI 813
            N    + D      +       +          TF  +  ++F G   +       +  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 814 EVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALI 873
              +    +   SL+ L++ NN +            +L  L    N +  +         
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL----PALPPRLERLIASFNHLAEVP----ELPQ 324

Query: 874 SLQVLQLDGNRLKSF 888
           +L+ L ++ N L+ F
Sbjct: 325 NLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 50/350 (14%), Positives = 98/350 (28%), Gaps = 20/350 (5%)

Query: 581 DASHNRILEISELS--IPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD- 637
                R + +S L   +      L +NN  + S+ P       +L  +    N +T+L  
Sbjct: 20  GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PELP---PHLESLVASCNSLTELPE 75

Query: 638 -LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVV 696
              +L+   V  N       L         S + L  +           + KI+D+DN  
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL----QNSSFLKIIDVDNNS 131

Query: 697 CKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNW 756
            K       +    +         P   +   L      +    ++              
Sbjct: 132 LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 191

Query: 757 NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVI 816
           N        Q +  +      +     L          +V       L     +     +
Sbjct: 192 NILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 251

Query: 817 LNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ 876
               F+GLS L       N  ++      D    L EL +  N++  +          L+
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLE 307

Query: 877 VLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWIIDN 926
            L    N L        N    L+++++  NP        + ++   +++
Sbjct: 308 RLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 3e-07
 Identities = 39/353 (11%), Positives = 101/353 (28%), Gaps = 39/353 (11%)

Query: 529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRIL 588
           Q   L L+   L       +P +L+ L    N ++ L    +     S+K+L   +N + 
Sbjct: 39  QAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQ-----SLKSLLVDNNNLK 91

Query: 589 EISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQ 648
            +S+L       +L         ++       S+  ++    N+  K             
Sbjct: 92  ALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 649 NKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHL 708
                   L         +  +    +    P +      I+  +N++ ++   +    L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 709 PASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQI 768
                             +A  +  +            N    +  +        +   +
Sbjct: 207 ---------------TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 251

Query: 769 STVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQ 828
           S        +        N        +     ++  L V+N+++  +          L+
Sbjct: 252 SENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL----PALPPRLE 307

Query: 829 VLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLD 881
            L    N +        +  + L +L+++ N +    +       S++ L+++
Sbjct: 308 RLIASFNHLAEV----PELPQNLKQLHVEYNPLREFPDI----PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 345 LRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSK 404
              N+      +      +L  + +S N++  + A        L +L  S N L  +   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAEVPE- 321

Query: 405 AFKNCSALKELDLSSNAIVEIPSALSELPFLK 436
                  LK+L +  N + E P     +  L+
Sbjct: 322 ---LPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-06
 Identities = 39/342 (11%), Positives = 105/342 (30%), Gaps = 31/342 (9%)

Query: 126 RELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKI 185
           R+   L +++  + S+ +       ++++L  S NS+ ++  L  +++    ++N+ + +
Sbjct: 38  RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 186 ECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRIL 245
                            L      S     +  +  +    +I  +  N  +        
Sbjct: 94  SD------------LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV-DNNSLKKLPDLPP 140

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
           ++      +         +++  + A       L +     L    ++  ++       +
Sbjct: 141 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPEL 200

Query: 306 DETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLH 365
               F+  I      L          +                      D +      L 
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 366 TIYLSENRIHHITAHLFNGLYVLSKLT---LSNNLLVNIDSKAFKNCSALKELDLSSNAI 422
            +  +   ++  +  + +   +   L    +SNN L+ + +        L+ L  S N +
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHL 316

Query: 423 VEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
            E+P        LK L +  N + +  +      + + DLR+
Sbjct: 317 AEVPELPQN---LKQLHVEYNPLREFPDI----PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
              N   N          +L+EL++S+N ++E+P   +  P L+ L    N ++++    
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVPE-- 321

Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLS 489
               Q L  L +  N +            S+E L ++
Sbjct: 322 --LPQNLKQLHVEYNPLREFPD----IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 58/343 (16%), Positives = 97/343 (28%), Gaps = 28/343 (8%)

Query: 216 RRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNS 275
           R+   L L N  +S +          L  L  S N L  LPE   S          +   
Sbjct: 38  RQAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPELPQSL---------KSLL 84

Query: 276 LVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFK 335
           +   +      L  LL     SN+      +      L  + + N S  +L  +      
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 336 DLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395
                 +L+            A  +  N                   N L  L +L    
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 396 NLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKN 455
            L            + L +        +E  +                    +    F  
Sbjct: 205 FL------TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG 258

Query: 456 LQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN 515
           L +L       N   N    +    PSLE LN+S NK+ ++         RL  +    N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFN 314

Query: 516 FLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIH 558
            L ++  +      L  L++  N L  F    +P +++ L ++
Sbjct: 315 HLAEVPEL---PQNLKQLHVEYNPLREFPD--IPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 298 NHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNA 357
              +S++   +       L  LN+SNN+L  + A   +    L+RL    N +  + +  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR----LERLIASFNHLAEVPE-- 321

Query: 358 FLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSN 395
                NL  +++  N +        +    +  L +++
Sbjct: 322 --LPQNLKQLHVEYNPLREFPDIPES----VEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-04
 Identities = 46/324 (14%), Positives = 95/324 (29%), Gaps = 23/324 (7%)

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNN 348
           Q   L+L++  LSS  + E        L  L  S N LT +          L+ L + NN
Sbjct: 39  QAHELELNNLGLSS--LPEL----PPHLESLVASCNSLTELPELPQS----LKSLLVDNN 88

Query: 349 SIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKN 408
           ++  + D   L  Y         +               L  + + NN L  +       
Sbjct: 89  NLKALSDLPPLLEYLGV------SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNN 468
                  +                 +     L +     +   S      + +      N
Sbjct: 143 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQN 202

Query: 469 IGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLA 528
           +  L++          + +L  +         +  +       L    +++         
Sbjct: 203 LPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 262

Query: 529 QLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRIL 588
                 L+ +         +P +L+ L++  N +  L           ++ L AS N + 
Sbjct: 263 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIASFNHLA 317

Query: 589 EISELSIPNSVEVLFINNNLIKSV 612
           E+ EL  P +++ L +  N ++  
Sbjct: 318 EVPEL--PQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 7e-04
 Identities = 45/382 (11%), Positives = 111/382 (29%), Gaps = 72/382 (18%)

Query: 458 QLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFL 517
           Q  +L L +  + +L        P LE L  S N + ++                     
Sbjct: 39  QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELP-------------------- 74

Query: 518 TDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSI 577
                                         +P +LK L +  N + +L++         +
Sbjct: 75  -----------------------------ELPQSLKSLLVDNNNLKALSDLPP-----LL 100

Query: 578 KNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLD 637
           + L  S+N++ ++ EL   + ++++ ++NN +K +       +   A  +         +
Sbjct: 101 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQN 160

Query: 638 LTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVC 697
           L  L       N       L  +        + L  +    +           +L   + 
Sbjct: 161 LPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 220

Query: 698 KMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNW- 756
            +  S  + ++  +       L           +     +         N S    ++  
Sbjct: 221 DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 280

Query: 757 ----NTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQ 812
               +   ++ S  ++  +P   P     +    N    +P       +N+  L+V  + 
Sbjct: 281 DLPPSLEELNVSNNKLIELPALPP-RLERLIASFNHLAEVPELP----QNLKQLHVEYNP 335

Query: 813 IEVILNQTFNGLSSLQVLHLEN 834
           +        +   S++ L + +
Sbjct: 336 LREFP----DIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 146 FCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRT 205
                +++ LN+S N + ++  L   + R  A  N   ++      +L+ L + +N LR 
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQ-NLKQLHVEYNPLRE 338

Query: 206 LGDYSGITKFRRLQNLHLEN 225
             D         +++L + +
Sbjct: 339 FPDI-----PESVEDLRMNS 353

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 24/154 (15%), Positives = 54/154 (35%), Gaps = 14/154 (9%)

Query: 344 DLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDS 403
           +L+   +  ++       Y+     L    +            +   L   +++   +  
Sbjct: 3   ELKPEQVEQLK-LIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLR- 58

Query: 404 KAFKNCSALKELDLSSNAIV---EIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLT 460
              +N   L  L+LS+N +    ++ S + + P LK L+L  N++            +L 
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 461 DLRLVDNNIGNLSSG-------MLYELPSLEVLN 487
           +L L  N++ +           +    P L  L+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 4/129 (3%)

Query: 222 HLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSR 281
            L+  ++ Q+               +    L S P+      ++I  +  +++S+    R
Sbjct: 3   ELKPEQVEQL-KLIMSKRYDGSQQALDLKGLRSDPD---LVAQNIDVVLNRRSSMAATLR 58

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQ 341
            +   + +LL L+LS+N L       +       L ILNLS NEL           + L+
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 342 RLDLRNNSI 350
            L L  NS+
Sbjct: 119 ELWLDGNSL 127

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 9e-06
 Identities = 30/132 (22%), Positives = 44/132 (33%), Gaps = 6/132 (4%)

Query: 192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
           D     L    LR+  D         L         +  I  N    +  L  LN+S+N 
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN----IPELLSLNLSNNR 76

Query: 252 LVSLPE--GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETT 309
           L  L +   +     ++  +    N L         K  +L  L L  N LS    D++T
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 310 FIGLIRLIILNL 321
           +I  IR     L
Sbjct: 137 YISAIRERFPKL 148

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 778 DATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLI 837
           D +   LD    ++ P+   + +   + L   +S     L      +  L  L+L NN +
Sbjct: 21  DGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRL 77

Query: 838 THFYG--YEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT 895
                          L  L L  N ++          + L+ L LDGN L          
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 896 NSMLRK 901
            S +R+
Sbjct: 138 ISAIRE 143

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 412 LKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN 471
            + LDL           L        L+   +  + +     +N+ +L  L L +N +  
Sbjct: 24  QQALDLKGLRSDPD---LVAQNIDVVLNRRSSMAATLR-IIEENIPELLSLNLSNNRLYR 79

Query: 472 LS--SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDING------- 522
           L   S ++ + P+L++LNLS N++         K  +L  + LD N L+D          
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139

Query: 523 -VFTYLAQLLWLN 534
            +     +LL L+
Sbjct: 140 AIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 67  FQNIYSLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLR 126
                    L   +     L + +   +  L  L     NL  ++  +LD +   +    
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRI-IEENIPELLSL-----NLSNNRLYRLDDMSSIVQKAP 91

Query: 127 ELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRR 174
            L++LN+S + +KS  +        ++ L L  NS+ D          
Sbjct: 92  NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS 139

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (141), Expect = 2e-09
 Identities = 59/497 (11%), Positives = 129/497 (25%), Gaps = 61/497 (12%)

Query: 435 LKTLDLGENQISKIE-NGSFKNLQQLTDLRLVDNNIGNLS----SGMLYELPSLEVLNLS 489
           +++LD+   ++S          LQQ   +RL D  +        S  L   P+L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 490 KNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVP 549
            N++  + +                     + G+ T   ++  L+L    L      ++ 
Sbjct: 64  SNELGDVGVHCV------------------LQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 105

Query: 550 GNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLI 609
             L+ L        S N   +    L  + L     R+ ++       S        +++
Sbjct: 106 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 165

Query: 610 KSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMD 669
           ++         SN    +     + +    +       + ++               +  
Sbjct: 166 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 225

Query: 670 WLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFAL 729
                    S  +       +    +                 A     LC       +L
Sbjct: 226 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 285

Query: 730 CHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTF 789
                      +      C    +       +       +                    
Sbjct: 286 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-------- 337

Query: 790 KTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLE 849
                + F+    + +  + ++ +  +        S L+VL L +  ++           
Sbjct: 338 ----QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS----------- 382

Query: 850 KLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYL 904
                   ++    +A     A  SL+ L L  N L       L         +L ++ L
Sbjct: 383 --------DSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433

Query: 905 GNNPFSC-SCATLQELQ 920
            +  +S      LQ L+
Sbjct: 434 YDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 3e-06
 Identities = 42/468 (8%), Positives = 117/468 (25%), Gaps = 49/468 (10%)

Query: 388 LSKLTLSNNLLVNID-SKAFKNCSALKELDLSSNAI-----VEIPSALSELPFLKTLDLG 441
           +  L +    L +   ++        + + L    +      +I SAL   P L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 442 ENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTF 501
            N++                    D  +  +  G+      ++ L+L    +     G  
Sbjct: 64  SNELG-------------------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104

Query: 502 EKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNY 561
               R      + +   ++ G          L   +  L          +    +   + 
Sbjct: 105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 164

Query: 562 ISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDK- 620
           + +  ++ E+    +  N          + +         L        + +        
Sbjct: 165 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 224

Query: 621 -SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTS 679
            ++L  + + +N +  + +  L    +  +  L   ++           D   ++    S
Sbjct: 225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 284

Query: 680 PSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACD 739
                     +  +                       +  C  +      C         
Sbjct: 285 LKELSLAGNELGDEGARLLCET-------------LLEPGCQLESLWVKSCSFTAACCSH 331

Query: 740 CEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPN----H 795
                 +N      Q  N  + D   +++     +       ++L               
Sbjct: 332 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 391

Query: 796 VFIGRKNMLSLYVNNSQI-----EVILNQTFNGLSSLQVLHLENNLIT 838
             +   ++  L ++N+ +       ++         L+ L L +   +
Sbjct: 392 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 4e-05
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 406 FKNCSALKELDLSSNAI-----VEIPSALSELPFLKTLDLGENQIS-----KIENGSFKN 455
            +  S L+ L L+   +       + + L     L+ LDL  N +      ++     + 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 456 LQQLTDLRLVDNNIGNLSSGMLYEL----PSLEVL 486
              L  L L D          L  L    PSL V+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 5e-05
 Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 23/113 (20%)

Query: 191 MDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA----PNAFVALSSLRILN 246
           +D++ LD+   +L        +   ++ Q + L++  +++       +A     +L  LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 247 ISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           + SN L                       +  + +GL     ++  L L +  
Sbjct: 62  LRSNEL-------------------GDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 8e-04
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 290 LLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKT----FKDLVFLQRLDL 345
           +  LD+    LS     E     L +  ++ L +  LT    K      +    L  L+L
Sbjct: 4   IQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 346 RNNSIG-----YIEDNAFLSLYNLHTIYLSENRIHH 376
           R+N +G      +          +  + L    +  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.003
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 362 YNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNID----SKAFKNCSALKELDL 417
             +    L +  +  +   L     VL  L L++  + +      +       +L+ELDL
Sbjct: 345 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 404

Query: 418 SSNAI-VEIPSALSE-----LPFLKTLDLGENQISKIENGSFKNLQQ 458
           S+N +       L E        L+ L L +   S+      + L++
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 393 LSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGS 452
           L+  L+       + N    +ELDL    I  I +  + L     +D  +N+I K++   
Sbjct: 3   LTAELIEQAAQ--YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60

Query: 453 FKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKN-KRLAAIR 511
              L++L  L + +N I  +  G+   LP L  L L+ N + ++       + K L  + 
Sbjct: 61  --LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 512 LDSNFLTDING----VFTYLAQLLWLNLSE 537
           +  N +T+       V   + Q+  L+  +
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 5/141 (3%)

Query: 330 DAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLS 389
            A  + + V  + LDLR   I  IE N   +L     I  S+N I  +       L  L 
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLK 66

Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIP--SALSELPFLKTLDLGENQISK 447
            L ++NN +  I     +    L EL L++N++VE+     L+ L  L  L +  N ++ 
Sbjct: 67  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN 126

Query: 448 IENGSFKNLQQLTDLRLVDNN 468
            ++     + ++  +R++D  
Sbjct: 127 KKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 20/149 (13%), Positives = 40/149 (26%), Gaps = 4/149 (2%)

Query: 198 LSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPE 257
           L+   +     Y+   +    + L L   +I  I  N    L     ++ S N +  L  
Sbjct: 3   LTAELIEQAAQYTNAVR---DRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG 58

Query: 258 GLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLI 317
                      +   +   +             L+L  +S     +     +   L  L 
Sbjct: 59  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 118

Query: 318 ILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           IL                 +  ++ LD +
Sbjct: 119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 41/252 (16%), Positives = 79/252 (31%), Gaps = 19/252 (7%)

Query: 187 CSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRI-- 244
           CS     R+     +K+  +   S +   R    L     ++  I   AF     L    
Sbjct: 8   CSN----RVFLCQESKVTEIP--SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIE 59

Query: 245 LNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNH 304
           ++ +    V   +   +  +       + N+L+ ++   F  L  L  L +S+  +    
Sbjct: 60  ISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 119

Query: 305 IDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
                      L+ +  + N  T               L L  N I  I + AF      
Sbjct: 120 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLD 179

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
                  N +  +   +F+G      L +S   + ++ S   +N   L+     +     
Sbjct: 180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN----- 234

Query: 425 IPSALSELPFLK 436
               L +LP L+
Sbjct: 235 ----LKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 39/247 (15%), Positives = 75/247 (30%), Gaps = 16/247 (6%)

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
           S R+     + +  +P  L  +     E+      L  + +G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 301 S--SNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAF 358
                    +    L  + I   +N      +A      +    +               
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 359 LSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
                L  I  + N             +    L L+ N +  I + AF      +     
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 419 SNAIVEIP-SALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGML 477
           +N + E+P            LD+   +I  + +   +NL++L        +  NL     
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR-----STYNLKK--- 237

Query: 478 YELPSLE 484
             LP+LE
Sbjct: 238 --LPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 21/215 (9%), Positives = 48/215 (22%), Gaps = 8/215 (3%)

Query: 621 SNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSP 680
            N   +      +  +   A       +   + +  +         S             
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 681 SMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDC 740
           +           +    +            S          + IH          D  + 
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLI--------SNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 741 EMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGR 800
                 +      ++    +     Q+I                D N  + +PN VF G 
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 801 KNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENN 835
              + L ++ ++I  + +     L  L+     N 
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 23/225 (10%), Positives = 57/225 (25%), Gaps = 5/225 (2%)

Query: 634 TKLDLTALRLKPVPQN--KTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMD 691
                   ++  +P +  +   E             +             +E     +++
Sbjct: 11  RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR---VIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 692 LDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCF 751
           +          +                     +   L +    +     +         
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 752 HDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNS 811
                +                 +  ++  ++L+ N  + I N  F G +       +N+
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 812 QIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL 856
            +E + N  F+G S   +L +    I     Y  +NL+KL     
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 43/231 (18%), Positives = 80/231 (34%), Gaps = 8/231 (3%)

Query: 221 LHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELS 280
              + +++++I  +      +   L      L  + +G FS   D+ +I   +N ++E+ 
Sbjct: 13  FLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 281 RGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLV 338
                     L         +  +I+   F  L  L  L +SN  +       K      
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 339 FLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLL 398
            L  +    N      ++     +    ++L++N I  I    FNG  +       NN L
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 399 VNIDSKAFKNCSALKELDLSSNAIVEIPS-ALSELPFLKTLDLGENQISKI 448
             + +  F   S    LD+S   I  +PS  L  L  L+        + K+
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 5/228 (2%)

Query: 664 CDCSMDWLPIINNNTSPSMER---QYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLC 720
             C    +  I ++   +         K+  +               +  ++        
Sbjct: 13  FLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 72

Query: 721 PYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDAT 780
            +           E       +      +  + Q    +               +     
Sbjct: 73  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 132

Query: 781 HVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHF 840
            +  + N      N         + L++N + I+ I N  FNG    ++   +NN +   
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 841 YGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSF 888
               F        L +   RI  + +     L  L+        LK  
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 34/224 (15%), Positives = 73/224 (32%), Gaps = 14/224 (6%)

Query: 112 SKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFA 171
             K+  +P  L   R    L    + ++ I    F    +++ + +S+N + ++      
Sbjct: 17  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74

Query: 172 VRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKF----------RRLQNL 221
                      EK      ++        N    L   +GI             + L ++
Sbjct: 75  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 222 HLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSR 281
               N  +    +         IL ++ N +  +    F+  +      +  N+L EL  
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 282 GLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE 325
            +FH     ++LD+S   + S  +       L +L   +  N +
Sbjct: 195 DVFHGASGPVILDISRTRIHS--LPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 11/230 (4%)

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           +CS  +      + + EIPS L        L     ++  I+ G+F     L  + +  N
Sbjct: 7   HCS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 468 NIGNLS-------SGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
           ++  +           L+E+   +  NL        +     +   ++   +        
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 521 NGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDI-HGNYISSLNNYYEIKDGLSIKN 579
                 +   +  N++ + +    +  +      L +         N  +       +  
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 580 LDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIY 629
            D ++   L        +   +L I+   I S+  +   +   L     Y
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 33/210 (15%), Positives = 70/210 (33%), Gaps = 7/210 (3%)

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
            I L     +L  I    F     L+++++  N +  + +    S          E   +
Sbjct: 31  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 90

Query: 376 HITAHLFNGLYVLSKLTLSNNLL-----VNIDSKAFKNCSALKELDLSSNAIVEIPSALS 430
            +  +      + +   L  +        ++          L   D  +   +E  S + 
Sbjct: 91  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 150

Query: 431 ELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSK 490
                  L L +N I +I N +F   Q        +NN+  L + + +      +L++S+
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210

Query: 491 NKIHQIEIGTFEKNKRLAAIRLDSNFLTDI 520
            +IH +     E  K+L      +  L  +
Sbjct: 211 TRIHSLPSYGLENLKKL--RARSTYNLKKL 238

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 23/193 (11%)

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
             + +  +L    ++    D  T   L  +  +  +N+++  +     + L  + +L L 
Sbjct: 23  FAETIKDNLKKKSVT----DAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLN 76

Query: 347 NNSIGYIEDNAFLSLYNL---------------HTIYLSENRIHHITAHLFNGLYVLSKL 391
            N +  I+  A L                        L    + H      NGL  L +L
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 392 TLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENG 451
                    I      +     +     +  +     L+ L  L+ L L +N IS +   
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-- 194

Query: 452 SFKNLQQLTDLRL 464
           +   L+ L  L L
Sbjct: 195 ALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 8e-05
 Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 8/182 (4%)

Query: 675 NNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCE 734
            + T    + +   I  +      +   +G  +LP             DI   A      
Sbjct: 34  KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLG 93

Query: 735 FDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPN 794
           +   D       +      +  + ++       I+ +     +++ ++  +  T  T+ +
Sbjct: 94  WLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLS 153

Query: 795 HVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSEL 854
            +       L     +  +         GL+ LQ L+L  N I+         L+ L  L
Sbjct: 154 RLTKLDTLSLEDNQISDIVP------LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL 205

Query: 855 YL 856
            L
Sbjct: 206 EL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 5e-04
 Identities = 26/200 (13%), Positives = 63/200 (31%), Gaps = 11/200 (5%)

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
              +   + +L   ++ +  +  +EL  +  +    + I  ++    + L  +T L L  
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
           N +         ++  L  L                 + +        +   +       
Sbjct: 78  NKL--------TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586
           L  L  L              V   L  LD      + +++   +     ++NL  S N 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH 189

Query: 587 ILEISELSIPNSVEVLFINN 606
           I ++  L+   +++VL + +
Sbjct: 190 ISDLRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 35/212 (16%), Positives = 72/212 (33%), Gaps = 36/212 (16%)

Query: 148 SLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
           + A     NL + S+ D  T          E NS           +  +  +++ ++++ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQ--------NELNS-----------IDQIIANNSDIKSV- 61

Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN------------HLVSL 255
              GI     +  L L  N+++ I P A +       L+ +                +SL
Sbjct: 62  --QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
                S    +  +   ++  +  ++     +   L    + +   +   D     GL +
Sbjct: 120 EHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTK 179

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRN 347
           L  L LS N ++ + A     L  L  L+L +
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 15/203 (7%)

Query: 312 GLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSE 371
                I  NL    +T  DA T  +L  + ++   N+ I  +       L N+  ++L+ 
Sbjct: 22  AFAETIKDNLKKKSVT--DAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 372 NRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSE 431
           N++          L  L  L         +   +        +     +  +   + L  
Sbjct: 78  NKLTD-----IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           LP L++L LG N+I+  +      L +L  L L DN I ++    L  L  L+ L LSKN
Sbjct: 133 LPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 492 KIHQIEIGTFEKNKRLAAIRLDS 514
            I  +        K L  + L S
Sbjct: 189 HISDLR--ALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.6 bits (111), Expect = 7e-06
 Identities = 38/324 (11%), Positives = 76/324 (23%), Gaps = 22/324 (6%)

Query: 573 DGLSIKNLDASHNRILEI-SELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYAN 631
           +G S+K    +      + + L   +SV+ + ++ N I +           L+       
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA------RWLSENIASKK 59

Query: 632 DITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMD 691
           D+   + + +    V          L      C          N     + E     +  
Sbjct: 60  DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 119

Query: 692 LDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCF 751
              +     ++ G      ++ A +      +                  +         
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 752 HDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNS 811
                +  +      Q    P  I              K +            S      
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 812 QIEVILNQTF---NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIE-----Y 863
           +    L +       LS+     + +                L  L LQ N IE      
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAF-------SKLENIGLQTLRLQYNEIELDAVRT 292

Query: 864 IANGTFNALISLQVLQLDGNRLKS 887
           +       +  L  L+L+GNR   
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSE 316

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.2 bits (110), Expect = 8e-06
 Identities = 37/314 (11%), Positives = 87/314 (27%), Gaps = 16/314 (5%)

Query: 190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIA----PNAFVALSSLRIL 245
           G  L++  ++    +++   + + +   ++ + L  N I   A         +   L I 
Sbjct: 7   GKSLKLDAITTEDEKSVF--AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 246 NISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHI 305
             S      + + +  + R + +   +   L  +               +      +   
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 306 DET-TFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL 364
                  GL       ++         K  K+   L+ +    N +       +   +  
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVE 424
           H +  +   + +          +L  L     L V               L ++  +   
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 425 IPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGN-----LSSGMLYE 479
           +         L          + ++  S      L  LRL  N I       L + +  +
Sbjct: 245 LRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 480 LPSLEVLNLSKNKI 493
           +P L  L L+ N+ 
Sbjct: 301 MPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.003
 Identities = 38/313 (12%), Positives = 88/313 (28%), Gaps = 35/313 (11%)

Query: 388 LSKLTLSNNLLVNIDSKAF----KNCSALKELDLSSNAI-----VEIPSALSELPFLKTL 438
           +   +L  + +   D K+         ++KE+ LS N I       +   ++    L+  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 439 DLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVL------------ 486
           +  +    ++++   + L+ L    L    +  +        P+ +              
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 487 --------NLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN 538
                      +               + A        +          +   W    ++
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 539 HLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNS 598
           H +     MV   ++   I    +  L    E+K      N             L    +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 599 VEVLFINNNLIKS------VKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTL 652
           +  L +N+ L+ +      V   +  +   L  + +  N+I    +  L+     +   L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 653 PEFYLGGNPFDCD 665
               L GN F  +
Sbjct: 305 LFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.004
 Identities = 33/314 (10%), Positives = 80/314 (25%), Gaps = 25/314 (7%)

Query: 631 NDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTS----------- 679
           + IT  D  ++    + ++ ++ E  L GN    + +      I +              
Sbjct: 13  DAITTEDEKSV-FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 680 -------PSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHC 732
                  P   R   + +     +  +  S  +    A E           +    L + 
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 733 CEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTI 792
                   ++         + +  N   +       + +      +    +       T+
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 793 PNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLS 852
                  R   +   +          +  +   +       + L      +       L+
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 853 ELYLQENRIEYIANG-TFNALISLQVLQLDGNRLKSFRAFDL-----NTNSMLRKVYLGN 906
           +  L       + +  +    I LQ L+L  N ++      L          L  + L  
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 907 NPFSCSCATLQELQ 920
           N FS     + E++
Sbjct: 312 NRFSEEDDVVDEIR 325

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 9e-06
 Identities = 55/299 (18%), Positives = 108/299 (36%), Gaps = 28/299 (9%)

Query: 194 RILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHL- 252
           + LDL+   L    D +G    + +       + + Q     F +   ++ +++S++ + 
Sbjct: 3   QTLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIE 59

Query: 253 VSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIG 312
           VS   G+ S C  +  +  +   L +       K   L+ L+LS     S    +T    
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 313 LIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSEN 372
             RL  LNLS           F       ++ + + S    + N      NL    LS  
Sbjct: 120 CSRLDELNLSWC---------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL 170

Query: 373 RIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV--EIPSALS 430
                     +           + +L N   + F   + L+ L LS    +  E    L 
Sbjct: 171 VRRCPNLVHLDLSD--------SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 222

Query: 431 ELPFLKTLDLGENQISKIENGSFKNL-QQLTDLRLVDNNIGNLSSGMLYELPSLEVLNL 488
           E+P LKTL +       + +G+ + L + L  L++  ++   ++   +    + E+  +
Sbjct: 223 EIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 153 QTLNLSRNSIRD-----IDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLG 207
           QTL+L+  ++       + + G    R           E      ++ +DLS++ +    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 208 DYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNH 251
            +  +++  +LQNL LE   +S    N     S+L  LN+S   
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 43/265 (16%), Positives = 75/265 (28%), Gaps = 8/265 (3%)

Query: 185 IECSGGMD---LRILDLSHNKLRTLGDY-SGITKFRRLQNLHLENNE-ISQIAPNAFVAL 239
           + C        +  LDLS   L       S +     L  L++     +    P A   L
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 240 SSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNH 299
           + L  L I+  ++        S  + +  +    N+L          L  L+ +    N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 300 LSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFL 359
           +S   I ++          + +S N LT     TF +L        RN   G        
Sbjct: 161 ISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 360 SLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSS 419
                       +    +     +     + L L NN +     +       L  L++S 
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNL--NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 420 NAIVEIPSALSELPFLKTLDLGENQ 444
           N +         L          N+
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 8/263 (3%)

Query: 210 SGITKFRRLQNLHLENNEISQIA--PNAFVALSSLRILNISSNH-LVSLPEGLFSSCRDI 266
              T+  R+ NL L    + +    P++   L  L  L I   + LV       +    +
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 267 SEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNEL 326
             +Y    ++         +++ L+ LD S N LS       + +  +  I  +  N   
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRIS 162

Query: 327 TRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLY 386
             I             + +  N +       F               +    A +  G  
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA--NLNLAFVDLSRNMLEGDASVLFGSD 220

Query: 387 VLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EIPSALSELPFLKTLDLGENQI 445
             ++        +  D         L  LDL +N I   +P  L++L FL +L++  N +
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 446 SKIENGSFKNLQQLTDLRLVDNN 468
              E     NLQ+       +N 
Sbjct: 281 CG-EIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 40/261 (15%), Positives = 78/261 (29%), Gaps = 15/261 (5%)

Query: 412 LKELDLSSNAI---VEIPSALSELPFLKTLDLGEN-QISKIENGSFKNLQQLTDLRLVDN 467
           +  LDLS   +     IPS+L+ LP+L  L +G    +      +   L QL  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLT----DINGV 523
           N+       L ++ +L  L+ S N +      +      L  I  D N ++    D  G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 524 FTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDAS 583
           F+ L   + ++ +                             +  +         +L  +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 584 HNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRL 643
                        N   +   NN +  ++ P        L  +++  N++         +
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCG------EI 284

Query: 644 KPVPQNKTLPEFYLGGNPFDC 664
                 +         N   C
Sbjct: 285 PQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 0.001
 Identities = 24/213 (11%), Positives = 40/213 (18%), Gaps = 9/213 (4%)

Query: 648 QNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTH 707
           +   L   Y+               I    T           +                 
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 708 LPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQ 767
              S A P  Y     +                      N +                  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS---- 214

Query: 768 ISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSL 827
                       T                    KN+  L + N++I   L Q    L  L
Sbjct: 215 ----VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 828 QVLHLENNLITHFYGYEFDNLEKLSELYLQENR 860
             L++  N +      +  NL++        N+
Sbjct: 271 HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 1/251 (0%)

Query: 289 QLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNE-LTRIDAKTFKDLVFLQRLDLRN 347
           ++  LDLS  +L   +   ++   L  L  L +     L          L  L  L + +
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 348 NSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFK 407
            ++     +    +  L T+  S N +        + L  L  +T   N +      ++ 
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 408 NCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDN 467
           + S L      S   +      +              + + +        + T    +  
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYL 527
           N      G +    +L  L+L  N+I+        + K L ++ +  N L         L
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

Query: 528 AQLLWLNLSEN 538
            +      + N
Sbjct: 291 QRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 33/257 (12%), Positives = 62/257 (24%), Gaps = 9/257 (3%)

Query: 633 ITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPIINNNTSPSMERQ----YPK 688
           +  LDL+ L L   P+   +P   L   P+     +  +  +     P++ +     Y  
Sbjct: 52  VNNLDLSGLNL---PKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 689 IMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDACDCEMTCPKNC 748
           I   +       +      L   + + +           +L +          ++     
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 749 SCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYV 808
           S        T++     +    +PP                      V  G         
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 809 NNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGT 868
                            +L  L L NN I          L+ L  L +  N +       
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-Q 286

Query: 869 FNALISLQVLQLDGNRL 885
              L    V     N+ 
Sbjct: 287 GGNLQRFDVSAYANNKC 303

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 388 LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSN--AIVEIPSALSELPFLKTLDLGENQI 445
           ++K T   + +   + +     +  ++++L      I ++ + LS L   K L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 446 SKIENGSFKNLQQLTDL 462
            KI +     ++ L  L
Sbjct: 61  EKISS--LSGMENLRIL 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 32/213 (15%), Positives = 63/213 (29%), Gaps = 22/213 (10%)

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           L     +  G++ ++     +  +L  +T L      +  +    +  L +L  L L  N
Sbjct: 18  LANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551
           +I  +             +  +             +  L   +     +           
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 552 LKWLDIHGNYISSLNNYY----------------EIKDGLSIKNLDASHNRILEISELSI 595
           L         IS L                     + +   +  L A  N+I +IS L+ 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193

Query: 596 PNSVEVLFINNNLIKSVKPHTFFDKSNLARVDI 628
             ++  + + NN I  V P    + SNL  V +
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 47/216 (21%)

Query: 287 LEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLR 346
           L   + +    ++++    D  T   L  +  L+     +T I+    + L  L  L+L+
Sbjct: 18  LANAIKIAAGKSNVT----DTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELK 71

Query: 347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYV------------------- 387
           +N I  +     L+      +  +  +     A L +   +                   
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 388 -------------------LSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSA 428
                               +   LS       D     N S L  L    N I +I   
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 429 LSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRL 464
           L+ LP L  + L  NQIS +      N   L  + L
Sbjct: 191 LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 12/203 (5%)

Query: 121 SLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESN 180
           +   L  +  L+   + + +I       L N+  L L  N I D+  L    +    E +
Sbjct: 36  TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAPLKNLTKITELELS 93

Query: 181 SGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS 240
                  S    L+ +         + D + +     LQ L+L+ N+I+ I+P A +   
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLT-- 151

Query: 241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHL 300
              +  +S  +         ++   ++ + A  N + ++S      L  L+ + L +N +
Sbjct: 152 --NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQI 207

Query: 301 SSNHIDETTFIGLIRLIILNLSN 323
           S    D +       L I+ L+N
Sbjct: 208 S----DVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 7e-04
 Identities = 38/225 (16%), Positives = 77/225 (34%), Gaps = 14/225 (6%)

Query: 123 DGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSG 182
             L     +    SN+          L  I TL+     +  I+ + +       E    
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN 73

Query: 183 EKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL 242
           +  + +   +L  +         L + S I   + ++ L L + +I+         LS+L
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNL 131

Query: 243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSS 302
           ++L +  N + ++      +      I   + S           L +L  L    N +S 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----DLTPLANLSKLTTLKADDNKIS- 186

Query: 303 NHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRN 347
              D +    L  LI ++L NN+++ +      +   L  + L N
Sbjct: 187 ---DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 13/217 (5%)

Query: 390 KLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIE 449
           K+    + + +  ++A  +   +  L      +  I   +  L  L  L+L +NQI+ + 
Sbjct: 23  KIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA 79

Query: 450 NGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAA 509
                      +L        +  +G+                    ++        L  
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST------QITDVTPLAGLSNLQV 133

Query: 510 IRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYY 569
           + LD N +T+I+ +            +         A +   L  L    N IS ++   
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTLKADDNKISDISPLA 192

Query: 570 EIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINN 606
            +    ++  +   +N+I ++S L+  +++ ++ + N
Sbjct: 193 SLP---NLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 32/223 (14%), Positives = 70/223 (31%), Gaps = 21/223 (9%)

Query: 196 LDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSL 255
           +    + +    D         +  L      ++ I       L++L  L +  N +  L
Sbjct: 24  IAAGKSNVT---DTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL 78

Query: 256 PEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIR 315
                 +   I+E+    N L  +S     +  + L L  +     +     +    L  
Sbjct: 79  AP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 316 LIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIH 375
            +    + + L  +    +              +    +     +L  L T+   +N+I 
Sbjct: 137 DLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 376 HITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLS 418
            I+      L  L ++ L NN + ++      N S L  + L+
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 17/114 (14%), Positives = 39/114 (34%), Gaps = 1/114 (0%)

Query: 409 CSALKELDLSSNAIVEIPSALSELPFLKTLDL-GENQISKIENGSFKNLQQLTDLRLVDN 467
                 L  + +  ++    L     L  L +  +  +  +E    + L +L +L +V +
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 468 NIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDIN 521
            +  ++    +  P L  LNLS N +  +   T +       +   +       
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 32/195 (16%), Positives = 56/195 (28%), Gaps = 53/195 (27%)

Query: 744 CPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNM 803
           CP  C         ++ + C+          +P       L                   
Sbjct: 1   CPDACCP-----HGSSGLRCTRDGALDSLHHLPGAENLTELYIE---------------- 39

Query: 804 LSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEY 863
                N   ++ +  +   GL  L+ L +  + +       F    +LS L L  N +E 
Sbjct: 40  -----NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES 94

Query: 864 IANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQTWI 923
           ++  T                              L+++ L  NP  CSC  L+ LQ W 
Sbjct: 95  LSWKTVQ-------------------------GLSLQELVLSGNPLHCSC-ALRWLQRWE 128

Query: 924 IDNSNKVKDGLDISC 938
            +    V +   + C
Sbjct: 129 EEGLGGVPEQ-KLQC 142

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 20/144 (13%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLS-NNELTRIDAKTFKDLVFLQRLDLRNNSI 350
            L  + +    +        G   L  L +     L  ++ +  + L  L+ L +  + +
Sbjct: 12  GLRCTRDGALDSL---HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 351 GYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCS 410
            ++  +AF     L  + LS N +  ++     GL +   +   N L  +   +  +   
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128

Query: 411 ALKELDLSSNAIV-EIPSALSELP 433
                 +    +       L+ +P
Sbjct: 129 EEGLGGVPEQKLQCHGQGPLAHMP 152

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 38/196 (19%), Positives = 70/196 (35%), Gaps = 11/196 (5%)

Query: 407 KNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVD 466
              +   +  L    + +  S  ++L  + TL      I  I+    + L  LT +   +
Sbjct: 15  TALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 71

Query: 467 NNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTY 526
           N + +     +  L +L  L       +QI   T   N          N           
Sbjct: 72  NQLTD-----ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 126

Query: 527 LAQLLWLNLSENHLVWFDYAMVPGNLKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNR 586
           L  L  L LS N +          +L+ L+   N ++ L     +    +++ LD S N+
Sbjct: 127 LTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT---TLERLDISSNK 183

Query: 587 ILEISELSIPNSVEVL 602
           + +IS L+   ++E L
Sbjct: 184 VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 10/183 (5%)

Query: 432 LPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKN 491
           L       LG+  ++     S  +L Q+T L+     I ++    +  L +L  +N S N
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNN 72

Query: 492 KIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPGN 551
           ++  I   T  KN       L +N           L  L  L L  N +   D      N
Sbjct: 73  QLTDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKS 611
           L  L++  N IS ++    +     +         +  ++ L+   ++E L I++N +  
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT---TLERLDISSNKVSD 186

Query: 612 VKP 614
           +  
Sbjct: 187 ISV 189

>d1cyga1 b.1.18.2 (A:492-574) Cyclomaltodextrin glycanotransferase, domain D {Bacillus stearothermophilus [TaxId: 1422]} Length = 83

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 768 ISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSL 827
           I  V P +      V +DG  F T    V  G      +  +N+QI V +     G  ++
Sbjct: 6   IGHVGPMMGQVGHQVTIDGEGFGTNTGTVKFGTTAANVVSWSNNQIVVAVPNVSPGKYNI 65

Query: 828 QVL 830
            V 
Sbjct: 66  TVQ 68

>d3bmva1 b.1.18.2 (A:496-578) Cyclomaltodextrin glycanotransferase, domain D {Thermoanaerobacterium [TaxId: 28895]} Length = 83

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Cyclomaltodextrin glycanotransferase, domain D
species: Thermoanaerobacterium [TaxId: 28895]

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 768 ISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSL 827
           I  V P +      + +DG  F T    V  G      +  ++++++V +     G  ++
Sbjct: 6   IGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKVKVPSVTPGKYNI 65

Query: 828 QV 829
            +
Sbjct: 66  SL 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1344
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.13
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.96
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	96.73
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	96.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.07
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8e-26  Score=252.78  Aligned_cols=219  Identities=21%  Similarity=0.324  Sum_probs=187.7

Q ss_pred             CcccEEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCe
Q psy16377        575 LSIKNLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPE  654 (1344)
Q Consensus       575 ~~L~~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~  654 (1344)
                      ..+.+++.+++.++.++ ..+|..+++|+|++|+|+++.+..|.++++|++|+|++|+|+.++..       ...     
T Consensus        10 ~~~~~v~C~~~~L~~iP-~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-------~~l-----   76 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALP-PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTL-----   76 (266)
T ss_dssp             TTCCEEECTTSCCSSCC-SCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCC-----
T ss_pred             CCCeEEEccCCCCCeeC-cCcCcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc-------ccc-----
Confidence            45667788888888764 45778899999999999998888899999999999999988754210       000     


Q ss_pred             EEcCCCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccc
Q psy16377        655 FYLGGNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCE  734 (1344)
Q Consensus       655 l~l~~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~  734 (1344)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (266)
T d1p9ag_          77 --------------------------------------------------------------------------------   76 (266)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCccc
Q psy16377        735 FDACDCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIE  814 (1344)
Q Consensus       735 ~~~~~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~  814 (1344)
                                                                ..++.|+|++|+++.++. .|.++++|+.|++++|.+.
T Consensus        77 ------------------------------------------~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~l~~~~~~  113 (266)
T d1p9ag_          77 ------------------------------------------PVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLT  113 (266)
T ss_dssp             ------------------------------------------TTCCEEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCC
T ss_pred             ------------------------------------------cccccccccccccccccc-ccccccccccccccccccc
Confidence                                                      135667777777776654 5778899999999999999


Q ss_pred             ccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCccccccccc
Q psy16377        815 VILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLN  894 (1344)
Q Consensus       815 ~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~  894 (1344)
                      .+....+..+.+|+.|++++|.++.+++..|..+++|+.|++++|+|+.+++..|..+++|++|+|++|+|+.+|+..+ 
T Consensus       114 ~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~-  192 (266)
T d1p9ag_         114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-  192 (266)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred             eeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998765 


Q ss_pred             CCCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccC
Q psy16377        895 TNSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVK  931 (1344)
Q Consensus       895 ~~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~  931 (1344)
                      .+++|+.|+|++|||.|||+ +.||..|++++...+.
T Consensus       193 ~~~~L~~L~L~~Np~~CdC~-~~~l~~wl~~~~~~~~  228 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWLCNCE-ILYFRRWLQDNAENVY  228 (266)
T ss_dssp             TTCCCSEEECCSCCBCCSGG-GHHHHHHHHHTGGGBC
T ss_pred             CCCCCCEEEecCCCCCCCcc-hHHHHHHHHhccccee
Confidence            68899999999999999999 7999999987766553

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=3.5e-24  Score=253.10  Aligned_cols=191  Identities=29%  Similarity=0.422  Sum_probs=105.9

Q ss_pred             ccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCc
Q psy16377        334 FKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALK  413 (1344)
Q Consensus       334 ~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  413 (1344)
                      +..+++++.+++++|.+..+.+  +...++|+.|++++|.+.++.  .+..+++|+.|++++|.+.++.+  +..+++|+
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--LSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhcccccchhccccCccCCCCc--ccccccCC
Confidence            3444555555555555554433  233455555555555554432  24445555555555555554432  45555666


Q ss_pred             EEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcC
Q psy16377        414 ELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKI  493 (1344)
Q Consensus       414 ~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i  493 (1344)
                      .|+++++.+..++. +..++.++.++++.|.+.++.  .+..+++++.|++++|.+..++.  +..+++|++|++++|++
T Consensus       267 ~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         267 ELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred             EeeccCcccCCCCc-ccccccccccccccccccccc--ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCC
Confidence            66666666555542 455556666666666555432  34555666666666666655542  45566666666666666


Q ss_pred             cccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCC
Q psy16377        494 HQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSEN  538 (1344)
Q Consensus       494 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n  538 (1344)
                      +.+.  .+.++++|+.|++++|++++++. +.++++|+.|+|++|
T Consensus       342 ~~l~--~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         342 SDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCG--GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCh--hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            5543  35556666666666666666543 556666666666655

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=7.3e-24  Score=250.29  Aligned_cols=341  Identities=28%  Similarity=0.372  Sum_probs=196.4

Q ss_pred             CCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCC
Q psy16377        125 LRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLR  204 (1344)
Q Consensus       125 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~  204 (1344)
                      +.+|++|++++++|+++.  .+..+++|++|+|++|++++++.                   ++++++|++|++++|.++
T Consensus        43 l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~-------------------l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP-------------------LKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------------------GTTCTTCCEEECCSSCCC
T ss_pred             hCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCcc-------------------ccCCcccccccccccccc
Confidence            344555555555555442  24445555555555555554432                   122455555555555555


Q ss_pred             CCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhh
Q psy16377        205 TLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLF  284 (1344)
Q Consensus       205 ~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~  284 (1344)
                      .++   .++++++|+.|+++++.+++..+  ......+..+....+.+..+....................+     ..+
T Consensus       102 ~i~---~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  171 (384)
T d2omza2         102 DIT---PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----KPL  171 (384)
T ss_dssp             CCG---GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----GGG
T ss_pred             ccc---ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchh-----hhh
Confidence            443   24555556666665555554422  23344555555555544433322211111111111111111     112


Q ss_pred             cCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc
Q psy16377        285 HKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL  364 (1344)
Q Consensus       285 ~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L  364 (1344)
                      .............+....    ...+..+++++.+++++|.+..+.+  +..+++|+.|++++|.+..++  .+..+++|
T Consensus       172 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~--~l~~l~~L  243 (384)
T d2omza2         172 ANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG--TLASLTNL  243 (384)
T ss_dssp             TTCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--GGGGCTTC
T ss_pred             cccccccccccccccccc----ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc--hhhccccc
Confidence            333444444444444322    3445566666777777766666543  344566777777777766654  35566777


Q ss_pred             cEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCC
Q psy16377        365 HTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQ  444 (1344)
Q Consensus       365 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~  444 (1344)
                      +.|++++|.+.+..+  +..+++|+.|+++++.+.++.  .+..+..++.+++..|.+..++ .+..+++++.|++++|+
T Consensus       244 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         244 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSC
T ss_pred             chhccccCccCCCCc--ccccccCCEeeccCcccCCCC--cccccccccccccccccccccc-ccchhcccCeEECCCCC
Confidence            777777777766554  566677777777777776653  3566777777777777776654 36667777777777777


Q ss_pred             CCccCcchhcCCCCCcEEEcccCCCCCCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEecccc
Q psy16377        445 ISKIENGSFKNLQQLTDLRLVDNNIGNLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSN  515 (1344)
Q Consensus       445 i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  515 (1344)
                      +.++.  .+..+++|+.|++++|.++.++.  +.++++|++|++++|+++++.+  +.++++|+.|+|++|
T Consensus       319 l~~l~--~l~~l~~L~~L~L~~n~l~~l~~--l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         319 ISDIS--PVSSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSCCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCc--ccccCCCCCEEECCCCCCCCChh--HcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            77664  26677777777777777776652  6777778888887777776653  667777888877776

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.8e-24  Score=242.30  Aligned_cols=278  Identities=22%  Similarity=0.342  Sum_probs=223.3

Q ss_pred             CCCCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeC
Q psy16377          1 MFEVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISN   80 (1344)
Q Consensus         1 ~~~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~   80 (1344)
                      +..||..|.|..       +.|+|..++++.+| .++   + .++++|+|++|.+    .++++.+|.++++|++|++++
T Consensus         1 ~~~~p~~c~c~~-------~~~~C~~~~L~~lP-~~l---~-~~l~~L~Ls~N~i----~~l~~~~f~~l~~L~~L~l~~   64 (305)
T d1xkua_           1 GPVCPFRCQCHL-------RVVQCSDLGLEKVP-KDL---P-PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILIN   64 (305)
T ss_dssp             CCCCCTTCEEET-------TEEECTTSCCCSCC-CSC---C-TTCCEEECCSSCC----CCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCCCEecC-------CEEEecCCCCCccC-CCC---C-CCCCEEECcCCcC----CCcChhHhhcccccccccccc
Confidence            357999999842       26899999999998 444   3 5699999999998    568888999999999999999


Q ss_pred             CcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCC
Q psy16377         81 CKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRN  160 (1344)
Q Consensus        81 ~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n  160 (1344)
                      |.+..+++.+|.++++|+.|++++|++.        .+|..+  ...|+.|++++|.+..++...+.....++.++...|
T Consensus        65 n~~~~i~~~~f~~l~~L~~L~l~~n~l~--------~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n  134 (305)
T d1xkua_          65 NKISKISPGAFAPLVKLERLYLSKNQLK--------ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN  134 (305)
T ss_dssp             SCCCCBCTTTTTTCTTCCEEECCSSCCS--------BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             ccccccchhhhhCCCccCEecccCCccC--------cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccc
Confidence            9999998899999999999999877653        355443  368999999999999999988999999999999888


Q ss_pred             CCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCC
Q psy16377        161 SIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALS  240 (1344)
Q Consensus       161 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  240 (1344)
                      ...........               +.++++|+.+++++|.++.++..    .+++|+.|++++|.+....+..|.+++
T Consensus       135 ~~~~~~~~~~~---------------~~~l~~L~~l~l~~n~l~~l~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~  195 (305)
T d1xkua_         135 PLKSSGIENGA---------------FQGMKKLSYIRIADTNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLN  195 (305)
T ss_dssp             CCCGGGBCTTG---------------GGGCTTCCEEECCSSCCCSCCSS----CCTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             cccccCCCccc---------------cccccccCccccccCCccccCcc----cCCccCEEECCCCcCCCCChhHhhccc
Confidence            65432221110               33478899999999999888653    367899999999999988888999999


Q ss_pred             CccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCccccc------CCC
Q psy16377        241 SLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFI------GLI  314 (1344)
Q Consensus       241 ~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~------~l~  314 (1344)
                      .+++|++++|.+..++...|.++++|++|+|++|.++.+|.. |.++++|++|+|++|+++.  ++...|.      .+.
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~--i~~~~f~~~~~~~~~~  272 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKA  272 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCC--CCTTSSSCSSCCTTSC
T ss_pred             cccccccccccccccccccccccccceeeecccccccccccc-cccccCCCEEECCCCccCc--cChhhccCcchhcccC
Confidence            999999999999999888888899999999999999888764 5788899999998888876  4443332      234


Q ss_pred             cccEEEccCCCC
Q psy16377        315 RLIILNLSNNEL  326 (1344)
Q Consensus       315 ~L~~L~Ls~n~l  326 (1344)
                      +|+.|+|++|.+
T Consensus       273 ~L~~L~L~~N~~  284 (305)
T d1xkua_         273 SYSGVSLFSNPV  284 (305)
T ss_dssp             CCSEEECCSSSS
T ss_pred             CCCEEECCCCcC
Confidence            445555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.3e-24  Score=242.20  Aligned_cols=250  Identities=22%  Similarity=0.379  Sum_probs=204.4

Q ss_pred             EEECCCCcccccccccccCcccEEEcCCCcCCccCCCCCCCCCCccEEEecCCCCcccccccccccCCCCCCCCCeEEcC
Q psy16377        579 NLDASHNRILEISELSIPNSVEVLFINNNLIKSVKPHTFFDKSNLARVDIYANDITKLDLTALRLKPVPQNKTLPEFYLG  658 (1344)
Q Consensus       579 ~L~Ls~N~l~~~~~~~~~~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~  658 (1344)
                      .++.++++++.++. .+|.++++|+|++|+|+.+.+..|.++++|+.|++++|+|..+....+.     ....+..+.+.
T Consensus        15 ~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~-----~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-----GLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECC
T ss_pred             EEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccc-----ccccccccccc
Confidence            45666667776543 5778899999999999988888999999999999999998876653321     00111111110


Q ss_pred             CCcccccccCccccccccCCCCccccccCccccCCCceeecccCCCCccccccccCCCCCcCCCCccccccccccccccc
Q psy16377        659 GNPFDCDCSMDWLPIINNNTSPSMERQYPKIMDLDNVVCKMTYSRGSTHLPASEAAPSQYLCPYDIHCFALCHCCEFDAC  738 (1344)
Q Consensus       659 ~Np~~C~c~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~~~~~~~l~~~~~~~~~c~~~~~~~~~c~c~~~~~~  738 (1344)
                      .+                                                                              
T Consensus        89 ~~------------------------------------------------------------------------------   90 (284)
T d1ozna_          89 DN------------------------------------------------------------------------------   90 (284)
T ss_dssp             SC------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccCCCCCCCCeeeccCCCCccEEEcCCCCCCCCCCC-C--CCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccc
Q psy16377        739 DCEMTCPKNCSCFHDQNWNTNVVDCSEQQISTVPPR-I--PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEV  815 (1344)
Q Consensus       739 ~~~~~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~-i--p~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~  815 (1344)
                                                 ..+..++.. +  -..++.|++++|.+..++...|....+|+.+++++|+|+.
T Consensus        91 ---------------------------~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~  143 (284)
T d1ozna_          91 ---------------------------AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA  143 (284)
T ss_dssp             ---------------------------TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ---------------------------cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc
Confidence                                       000011000 0  1357899999999999999999999999999999999999


Q ss_pred             cccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccC
Q psy16377        816 ILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNT  895 (1344)
Q Consensus       816 i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~  895 (1344)
                      +.+.+|..+++|+.|+|++|+++.+++..|.++++|+.|++++|+++.+.+..|..+++|++|++++|+++.+++..|..
T Consensus       144 i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCC
Q psy16377        896 NSMLRKVYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES  943 (1344)
Q Consensus       896 ~~~L~~L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~  943 (1344)
                      +++|++|++++|||.|+|+ +.|+..|+++...   ...++.|..|..
T Consensus       224 ~~~L~~L~l~~N~l~C~C~-~~~l~~~l~~~~~---~~~~~~C~~p~~  267 (284)
T d1ozna_         224 LRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRG---SSSEVPCSLPQR  267 (284)
T ss_dssp             CTTCCEEECCSSCEECSGG-GHHHHHHHHHCCS---EECCCBEEESGG
T ss_pred             ccccCEEEecCCCCCCCcc-chHHHHHHHhCcC---CCCceEeCCchH
Confidence            9999999999999999998 7999999987543   346789987654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=9.5e-24  Score=223.23  Aligned_cols=184  Identities=27%  Similarity=0.480  Sum_probs=138.1

Q ss_pred             CCCCCCeeeccCCCCccEEEcCCCCCCCCCCCCCCCccEEEEeCCcccc-cCCCcCCCCCCccEEEccCCcccccccchh
Q psy16377        743 TCPKNCSCFHDQNWNTNVVDCSEQQISTVPPRIPMDATHVYLDGNTFKT-IPNHVFIGRKNMLSLYVNNSQIEVILNQTF  821 (1344)
Q Consensus       743 ~cp~~c~c~~~~~~~~~~v~cs~~~l~~~p~~ip~~l~~L~L~~n~l~~-l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f  821 (1344)
                      .||..|+|..      ..|+|++++++++|+.+|.++++|+|++|+|+. ++.                        ..|
T Consensus         1 ~CP~~C~C~~------~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~------------------------~~f   50 (192)
T d1w8aa_           1 DCPAMCHCEG------TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSD------------------------GLF   50 (192)
T ss_dssp             CCCTTSEEET------TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCS------------------------CSG
T ss_pred             CcCCCCEEcC------CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccc------------------------ccc
Confidence            3899999963      379999999999999998888877777777754 344                        445


Q ss_pred             cCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcE
Q psy16377        822 NGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRK  901 (1344)
Q Consensus       822 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~  901 (1344)
                      .++++|+.|+|++|++..+.+..|..+++|++|+|++|+|+.+++++|.++++|++|+|++|+|+.+++..|..+++|++
T Consensus        51 ~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             CCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccc
Confidence            56666666666666666666667777777777777777777777777777788888888888888888887888888999


Q ss_pred             EEecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCCCCCcccccc--CCcccccCc
Q psy16377        902 VYLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDESSPPIRKEID--LNSTTCTEY  961 (1344)
Q Consensus       902 L~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~~~~~~~~~~--~~~~~C~~~  961 (1344)
                      |+|++|||.|+|+ +.|+..|++...   .....++|..|....+ .+..+  .+...|...
T Consensus       131 l~L~~N~~~~~~~-~~~~~~~l~~~~---l~~~~~~c~~p~~l~~-~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         131 LNLASNPFNCNCH-LAWFAEWLRKKS---LNGGAARCGAPSKVRD-VQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             EECTTCCBCCSGG-GHHHHHHHHHHC---CSGGGCBBCSSTTTTT-SBGGGSCTTTCCCCCC
T ss_pred             ccccccccccccc-hHHHhhhhhhhc---ccCCCeEeCCChhhcC-CEeeecCHhhCcCCCC
Confidence            9999999999998 699999997653   3456789988865432 23333  344568654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2e-22  Score=229.94  Aligned_cols=251  Identities=27%  Similarity=0.441  Sum_probs=206.8

Q ss_pred             cccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377        192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  271 (1344)
                      .++.+|-++++++.+|..  +.  ++|++|+|++|+|+.+.+.+|.++++|++|++++|.+..+++..|.++++|+.|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~--l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKD--LP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCS--CC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCC--CC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            678889999889998874  43  67999999999999987778999999999999999999998888899999999999


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCc--cccccccCCCcccEEEecCCC
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTR--IDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++|+++.++...   ...+..|++.+|.+..  +....+.....+..++...+....  .....|..+++|+.+++++|.
T Consensus        87 ~~n~l~~l~~~~---~~~l~~L~~~~n~l~~--l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~  161 (305)
T d1xkua_          87 SKNQLKELPEKM---PKTLQELRVHENEITK--VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  161 (305)
T ss_dssp             CSSCCSBCCSSC---CTTCCEEECCSSCCCB--BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             cCCccCcCccch---hhhhhhhhccccchhh--hhhhhhhccccccccccccccccccCCCccccccccccCccccccCC
Confidence            999999888643   4678888998888876  566667777888888887775443  334567778889999999988


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhh
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSAL  429 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l  429 (1344)
                      +..++..   .+++|+.|++++|......+..|.+++.++.|++++|.+.++.+..|.++++|++|+|++|+++.+|.++
T Consensus       162 l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l  238 (305)
T d1xkua_         162 ITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL  238 (305)
T ss_dssp             CCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT
T ss_pred             ccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccc
Confidence            8877653   3578888999998888888888888888889999888888888888888888999999988888888888


Q ss_pred             cCCCCccEEEccCCCCCccCcchhc
Q psy16377        430 SELPFLKTLDLGENQISKIENGSFK  454 (1344)
Q Consensus       430 ~~l~~L~~L~Ls~n~i~~~~~~~~~  454 (1344)
                      ..+++|++|+|++|+|+.+....|.
T Consensus       239 ~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         239 ADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             ccccCCCEEECCCCccCccChhhcc
Confidence            8888888888888888877665554

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-25  Score=224.10  Aligned_cols=139  Identities=24%  Similarity=0.464  Sum_probs=128.8

Q ss_pred             CCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccCC
Q psy16377       1024 SKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQTE 1103 (1344)
Q Consensus      1024 ~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~~ 1103 (1344)
                      .+.||.+..+.++|++||.+.|.+.||+..++|++|+++||+.||..+.                               
T Consensus         3 ~~~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~-------------------------------   51 (149)
T d1fyxa_           3 NICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWII-------------------------------   51 (149)
T ss_dssp             SCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHH-------------------------------
T ss_pred             CCEEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHH-------------------------------
Confidence            4566778888789999999999999998788999999999999999999                               


Q ss_pred             ccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch---hhHHHHhhhccEE
Q psy16377       1104 WSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD---IELKPYLKSCMKI 1180 (1344)
Q Consensus      1104 w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~l 1180 (1344)
                          ++|.++|++||++|+|+|++|+++.||++|++.|++++++++..++|+|++++++...++   ++++.+++.+||+
T Consensus        52 ----~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~~~~~~l~~~l~~~~~l  127 (149)
T d1fyxa_          52 ----DNIIDSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNTKTYL  127 (149)
T ss_dssp             ----HHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSCSSCHHHHHHHHHTCSE
T ss_pred             ----HHHHHHHHhCCEEEEEEcCccccccchHHHHHHHHHHHHHcCCceEEEEEeccCchhhcchhhHHHHHHhccCCeE
Confidence                999999999999999999999999999999999999999999999999999999877765   5999999999999


Q ss_pred             EeC-----chhhHHHhHhhcCC
Q psy16377       1181 RWG-----EKRFWERLRYAMPT 1197 (1344)
Q Consensus      1181 ~w~-----~~~Fw~~l~~~~p~ 1197 (1344)
                      +|+     +++||+|||+|||.
T Consensus       128 ~w~~~~~~~~~Fw~~L~~al~~  149 (149)
T d1fyxa_         128 EWPMDEAQREGFWVNLRAAIKS  149 (149)
T ss_dssp             ECCSSGGGHHHHHHHHHHHHHC
T ss_pred             ECCCCcccchHHHHHHHHHcCC
Confidence            994     56999999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.4e-22  Score=226.77  Aligned_cols=238  Identities=21%  Similarity=0.362  Sum_probs=185.7

Q ss_pred             CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      .||..|.|+.  +.  +..|.|..++++.+| .++   + .++++|+|++|.+    ..+++.+|.++++|++|++++|+
T Consensus         1 ~cp~~C~C~~--~~--~~~v~c~~~~L~~iP-~~i---p-~~~~~L~Ls~N~i----~~i~~~~f~~l~~L~~L~ls~n~   67 (284)
T d1ozna_           1 PCPGACVCYN--EP--KVTTSCPQQGLQAVP-VGI---P-AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNV   67 (284)
T ss_dssp             CCCTTCEEEC--SS--SCEEECCSSCCSSCC-TTC---C-TTCSEEECTTSCC----CEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcCCCCEEcC--CC--CeEEEcCCCCCCccC-CCC---C-CCCCEEECcCCcC----CCCCHHHhhcccccccccccccc
Confidence            5999999962  22  247899999999998 443   3 5689999999998    56888899999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377         83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI  162 (1344)
Q Consensus        83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l  162 (1344)
                      +..++...+.++..++.+.+..++.      ...+.+..|.++++|++|++++|.+..++...+..+++|+.+++++|.+
T Consensus        68 l~~i~~~~~~~~~~~~~l~~~~~~~------~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l  141 (284)
T d1ozna_          68 LARIDAAAFTGLALLEQLDLSDNAQ------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL  141 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCTT------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccccccccccccc------cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc
Confidence            9999988999999999998753322      1234567788888888888888888888777777788888888888888


Q ss_pred             CCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCc
Q psy16377        163 RDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSL  242 (1344)
Q Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  242 (1344)
                      +.++...|.                 .+++|+.|++++|+++.+++. .|.++++|+.|++++|.++++.|..|.++++|
T Consensus       142 ~~i~~~~f~-----------------~~~~L~~L~l~~N~l~~l~~~-~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         142 QALPDDTFR-----------------DLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             CCCCTTTTT-----------------TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccChhHhc-----------------cccchhhcccccCcccccchh-hhccccccchhhhhhccccccChhHhhhhhhc
Confidence            777655442                 256777888888877777765 67777788888888777777777777777777


Q ss_pred             cEEEeeCCCCCCCChhhhcCCCCCcEEEcccCccc
Q psy16377        243 RILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLV  277 (1344)
Q Consensus       243 ~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~  277 (1344)
                      ++|++++|.+..+++..|..+++|++|++++|.+.
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccccccccccccccccccccccCEEEecCCCCC
Confidence            77777777777777777777777777777776655

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.4e-24  Score=214.55  Aligned_cols=139  Identities=24%  Similarity=0.418  Sum_probs=127.7

Q ss_pred             CCCccCCccCCCCchhHHHHHHHHhhhhcCCCCceeEEeeccCCCCCCcccccCCchhHHHHHhhhheeeeeeecccccC
Q psy16377       1023 SSKHFGEDREKLPKDEEFVLQSIVAELEHGNPSYQLCLHYRDLPHHSPYLQQHTTSPVVIEAAEASRRVILVLTKNFLQT 1102 (1344)
Q Consensus      1023 ~~~~~~~~~~~~~~d~~~v~~~l~~~Le~~~~~~~lc~~~rD~~~~~~~~~~~~~~~~~~~~~~~s~~~i~vls~~~~~~ 1102 (1344)
                      ..+.||.+..+.++|++||.+.|.+.||+  .||++|+.+||+.||..+.                              
T Consensus         9 ~~~~yDvFisys~~D~~~v~~~L~~~Le~--~g~~v~~d~~d~~~G~~~~------------------------------   56 (161)
T d1fyva_           9 RNLQFHAFISYSGHDSFWVKNELLPNLEK--EGMQICLHERNFVPGKSIV------------------------------   56 (161)
T ss_dssp             SCCCEEEEEECCGGGHHHHHHTHHHHHHT--TTCCEECTTTTCCTTSCHH------------------------------
T ss_pred             CCCeeEEEEecChhHHHHHHHHHHHHHHh--CCCcceEeccccccccccH------------------------------
Confidence            34567888888899999999999999995  4799999999999999999                              


Q ss_pred             CccchhHHHHHHHhcccEEEEecccchhhhhhHHHHHHHHHHHHhcCCceEEEEEecCCCcccch---hhHHHHhhhccE
Q psy16377       1103 EWSRSDFLIEAAEASRRVILVLTKNFLQTEWSRSDFRSAIHEALTTKTHKLVLVEENIVPEAESD---IELKPYLKSCMK 1179 (1344)
Q Consensus      1103 ~w~~~~~i~~~i~~srr~i~vls~~f~~~~w~~~e~~~a~~~~l~~~~~~~i~i~~~~~~~~~~~---~~l~~~l~~~~~ 1179 (1344)
                           +.|.++|++||++|+|+|++|++++||++|++.|+++++++++.++|+|+++++++..++   ..|+.+++.++|
T Consensus        57 -----~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~~~~~~~~~~~~~~L~~~~~~~~~  131 (161)
T d1fyva_          57 -----ENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRTY  131 (161)
T ss_dssp             -----HHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCCCSCSSCSSEEEEESSCCCGGGSCTTCHHHHHHHHTCCC
T ss_pred             -----HHHHHHHHhCCEEEEEecCccccChHHHHHHHHHHHHHHHcCCCceeEEEEecCchhhcchhHHHHHHHHhcCCe
Confidence                 999999999999999999999999999999999999999999999999999999877765   489999999999


Q ss_pred             EEeCc-----hhhHHHhHhhcCCC
Q psy16377       1180 IRWGE-----KRFWERLRYAMPTC 1198 (1344)
Q Consensus      1180 l~w~~-----~~Fw~~l~~~~p~~ 1198 (1344)
                      ++|++     ++||++||+|||.+
T Consensus       132 l~W~~~~~~~~~FW~~L~~aL~~~  155 (161)
T d1fyva_         132 LEWPKEKSKRGLFWANLRAAINIK  155 (161)
T ss_dssp             EECCSSGGGSSHHHHHHHHHHHSC
T ss_pred             EeCCCCcchhHHHHHHHHHHCCCC
Confidence            99963     58999999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.83  E-value=7.2e-21  Score=217.77  Aligned_cols=247  Identities=21%  Similarity=0.240  Sum_probs=153.7

Q ss_pred             cccEEECCCCCCCC---CCCCccCCCCCCCCEEEccC-CCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCc
Q psy16377        192 DLRILDLSHNKLRT---LGDYSGITKFRRLQNLHLEN-NEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDIS  267 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~---l~~~~~l~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~  267 (1344)
                      +++.|+|+++.+++   +|.  .++++++|++|+|++ |.+++.+|..|+++++|++|+|++|.+..+++..+..+..|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCCh--HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            57777777777664   333  567777777777765 566666666677777777777777776666666666666666


Q ss_pred             EEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcc-cEEEec
Q psy16377        268 EIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFL-QRLDLR  346 (1344)
Q Consensus       268 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls  346 (1344)
                      .++++.|.+....+..+.+++.|+.+++++|.+.                          +..+..+..+..+ +.++++
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~--------------------------~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--------------------------GAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--------------------------EECCGGGGCCCTTCCEEECC
T ss_pred             ccccccccccccCchhhccCcccceeeccccccc--------------------------cccccccccccccccccccc
Confidence            6666666555444444455555555555555544                          3333333333333 445555


Q ss_pred             CCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCC-cc
Q psy16377        347 NNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIV-EI  425 (1344)
Q Consensus       347 ~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l  425 (1344)
                      +|.+....+..+..+. +..+++..+...+..+..+..+++++.+++++|.+.+..+ .+..+++|+.|+|++|+++ .+
T Consensus       183 ~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~i  260 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTL  260 (313)
T ss_dssp             SSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECC
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccC
Confidence            5555444444444443 2346666666666666666666666777776666655433 4566677777777777777 67


Q ss_pred             chhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCC
Q psy16377        426 PSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       426 p~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  469 (1344)
                      |..++.+++|++|+|++|++++..| .+.++++|+.+++++|+.
T Consensus       261 P~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         261 PQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSE
T ss_pred             ChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCcc
Confidence            7777777777777777777776555 346667777777777763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.2e-20  Score=215.76  Aligned_cols=248  Identities=21%  Similarity=0.275  Sum_probs=191.6

Q ss_pred             CCCCEEEccCCCCCCc--ChhhhcCCCCccEEEeeC-CCCC-CCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCC
Q psy16377        216 RRLQNLHLENNEISQI--APNAFVALSSLRILNISS-NHLV-SLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLL  291 (1344)
Q Consensus       216 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~-n~l~-~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  291 (1344)
                      .+++.|+|+++.+.+.  +|..++++++|++|+|++ |.+. .+|+. |.++++|++|+|++|.+..+++..        
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~~~~~--------  120 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDF--------  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGG--------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhcccccccccccc--------
Confidence            3577788888877763  466777777777777775 5555 34443 344555555555555554444444        


Q ss_pred             EEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCc-cEEEcc
Q psy16377        292 VLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNL-HTIYLS  370 (1344)
Q Consensus       292 ~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L-~~L~Ls  370 (1344)
                                        +..+.+|+.++++.|.+....+..+..++.|+.+++++|.+....+..+..+..+ +.++++
T Consensus       121 ------------------~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         121 ------------------LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             ------------------GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred             ------------------ccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccc
Confidence                              4445555555555555555556678888999999999999875544566666665 899999


Q ss_pred             CCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCc
Q psy16377        371 ENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIEN  450 (1344)
Q Consensus       371 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~  450 (1344)
                      .|++.+..+..+..+..+ .+++..+...+..+..+..+++|+.+++++|.+...+..+..+++|+.|+|++|++++..|
T Consensus       183 ~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         183 RNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             SSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCC
Confidence            999999988888776554 7999999998888989999999999999999998767788999999999999999998888


Q ss_pred             chhcCCCCCcEEEcccCCCC-CCCcccccCCCCccEEEcCCCcC
Q psy16377        451 GSFKNLQQLTDLRLVDNNIG-NLSSGMLYELPSLEVLNLSKNKI  493 (1344)
Q Consensus       451 ~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~n~i  493 (1344)
                      ..|+++++|+.|+|++|+++ .+|.  +.++++|+.+++++|+.
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSSE
T ss_pred             hHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCcc
Confidence            89999999999999999995 7775  57889999999999973

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=183.15  Aligned_cols=117  Identities=26%  Similarity=0.390  Sum_probs=88.9

Q ss_pred             CCccceeecccc-cccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCCCcccccccccCCCCCcEE
Q psy16377        824 LSSLQVLHLENN-LITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKV  902 (1344)
Q Consensus       824 l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L  902 (1344)
                      +++|++|+|++| .|+.+++..|.++++|+.|+|++|+|++|++.+|..+++|++|+|++|+|+.++...+... .|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            345555566444 4666666677777777777777777777777777777888888888888888887777654 58999


Q ss_pred             EecCCcccCCChhhHHHHHHHhhcCCccCCCCCeeecCCCC
Q psy16377        903 YLGNNPFSCSCATLQELQTWIIDNSNKVKDGLDISCVIDES  943 (1344)
Q Consensus       903 ~l~~Np~~C~C~~l~~l~~w~~~~~~~v~~~~~~~C~~~~~  943 (1344)
                      +|++|||.|+|+ +.||..|+......+ +..+++|..|..
T Consensus       109 ~L~~Np~~C~C~-~~~l~~~~~~~~~~~-~~~~~~C~~p~~  147 (156)
T d2ifga3         109 VLSGNPLHCSCA-LRWLQRWEEEGLGGV-PEQKLQCHGQGP  147 (156)
T ss_dssp             ECCSSCCCCCGG-GHHHHHHHHTTCSSC-GGGCCCCSSSSC
T ss_pred             ccCCCcccCCch-HHHHHHHHHhccCcc-CcCCcEECcChH
Confidence            999999999998 799999998765544 457899988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.9e-19  Score=195.34  Aligned_cols=197  Identities=24%  Similarity=0.256  Sum_probs=122.1

Q ss_pred             ccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEc
Q psy16377        242 LRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNL  321 (1344)
Q Consensus       242 L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~L  321 (1344)
                      +.+++.++++++.+|+++.   ++|++|+|++|.++.+++..|.++++|++|+|++|.++.  +  ..+..+++|+.|+|
T Consensus        12 ~~~v~C~~~~L~~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l--~~~~~l~~L~~L~L   84 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--L--QVDGTLPVLGTLDL   84 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--E--ECCSCCTTCCEEEC
T ss_pred             CeEEEccCCCCCeeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--c--cccccccccccccc
Confidence            3334444444444443321   234445555554444444444555555555555554443  1  22344555555555


Q ss_pred             cCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCC
Q psy16377        322 SNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNI  401 (1344)
Q Consensus       322 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  401 (1344)
                      ++|.+... +..+..+++|+.|++++|.+..+....+..+.+++.|++++|.+..+.+..+..++.|+.|++++|+++.+
T Consensus        85 s~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            55555444 22455566666666666666666666666667777777777777777666677777777777777777777


Q ss_pred             ChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCC
Q psy16377        402 DSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQIS  446 (1344)
Q Consensus       402 ~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~  446 (1344)
                      .+..|..+++|++|+|++|+++.+|..+..+++|+.|+|++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            777777788888888888888888877777888888888887653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=2.3e-16  Score=182.52  Aligned_cols=76  Identities=25%  Similarity=0.379  Sum_probs=38.4

Q ss_pred             CCCEEEeeCCcCCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCC
Q psy16377         72 SLEELKISNCKLVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLAN  151 (1344)
Q Consensus        72 ~L~~L~Ls~~~i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~  151 (1344)
                      +|++|||+++.++++|+    .+++|++|+|++|++        +.+|..+   .+|+.|++++|.++.++.  +  .+.
T Consensus        39 ~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l--------~~lp~~~---~~L~~L~l~~n~l~~l~~--l--p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSL--------TELPELP---QSLKSLLVDNNNLKALSD--L--PPL   99 (353)
T ss_dssp             TCSEEECTTSCCSCCCS----CCTTCSEEECCSSCC--------SSCCCCC---TTCCEEECCSSCCSCCCS--C--CTT
T ss_pred             CCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCC--------cccccch---hhhhhhhhhhcccchhhh--h--ccc
Confidence            46666666666666653    234566666644433        2234332   345555555555554432  1  124


Q ss_pred             CCEEECCCCCCCCCC
Q psy16377        152 IQTLNLSRNSIRDID  166 (1344)
Q Consensus       152 L~~L~Ls~n~l~~l~  166 (1344)
                      |++|++++|.+..++
T Consensus       100 L~~L~L~~n~l~~lp  114 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLP  114 (353)
T ss_dssp             CCEEECCSSCCSSCC
T ss_pred             ccccccccccccccc
Confidence            555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.76  E-value=1.6e-16  Score=183.87  Aligned_cols=314  Identities=25%  Similarity=0.312  Sum_probs=162.9

Q ss_pred             CCCEEECCCCCCCCCCCcchhhhccccccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCC
Q psy16377        151 NIQTLNLSRNSIRDIDTLGFAVRRASAESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQ  230 (1344)
Q Consensus       151 ~L~~L~Ls~n~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~  230 (1344)
                      +|++|+|+++.++.+++.                     .++|++|+|++|+|+.+|..     +.+|+.|++++|.++.
T Consensus        39 ~l~~LdLs~~~L~~lp~~---------------------~~~L~~L~Ls~N~l~~lp~~-----~~~L~~L~l~~n~l~~   92 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---------------------PPHLESLVASCNSLTELPEL-----PQSLKSLLVDNNNLKA   92 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---------------------CTTCSEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSC
T ss_pred             CCCEEEeCCCCCCCCCCC---------------------CCCCCEEECCCCCCcccccc-----hhhhhhhhhhhcccch
Confidence            456666666666655431                     35667777777777766542     3466677777766655


Q ss_pred             cChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccc
Q psy16377        231 IAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTF  310 (1344)
Q Consensus       231 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~  310 (1344)
                      +. + +  .+.|++|++++|.+..+|.  +..+++|+.|++.++.+...+.    ....+..+.+..+....    ...+
T Consensus        93 l~-~-l--p~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~----~~~l  158 (353)
T d1jl5a_          93 LS-D-L--PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEE----LPEL  158 (353)
T ss_dssp             CC-S-C--CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS----CCCC
T ss_pred             hh-h-h--ccccccccccccccccccc--hhhhccceeecccccccccccc----ccccccchhhccccccc----cccc
Confidence            42 1 1  1346677777776666654  3456666666666665554442    23445555555444322    2334


Q ss_pred             cCCCcccEEEccCCCCCccccccccCCCcccEEEecCCCccccchhhhcCCCCccEEEccCCcccccccccccCCCceeE
Q psy16377        311 IGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNSIGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSK  390 (1344)
Q Consensus       311 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  390 (1344)
                      ..++.++.+.+.+|........    ....+.+...++.+..++.  +..++.|+.+++++|                  
T Consensus       159 ~~l~~l~~L~l~~n~~~~~~~~----~~~~~~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n------------------  214 (353)
T d1jl5a_         159 QNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNN------------------  214 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSS------------------
T ss_pred             cccccceecccccccccccccc----ccccccccccccccccccc--ccccccccccccccc------------------
Confidence            4455555555555554433211    1122333444333333322  233444444444444                  


Q ss_pred             EEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccchhhcCCCCccEEEccCCCCCccCcchhcCCCCCcEEEcccCCCC
Q psy16377        391 LTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPSALSELPFLKTLDLGENQISKIENGSFKNLQQLTDLRLVDNNIG  470 (1344)
Q Consensus       391 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~  470 (1344)
                            ......    ....++..+.+.++.+...+..   ...+...++..+.+.++..    -.......++..+.+.
T Consensus       215 ------~~~~~~----~~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l~~----l~~~~~~~~~~~~~~~  277 (353)
T d1jl5a_         215 ------LLKTLP----DLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIR  277 (353)
T ss_dssp             ------CCSSCC----SCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCS
T ss_pred             ------cccccc----cccccccccccccccccccccc---ccccccccccccccccccc----ccchhcccccccCccc
Confidence                  333221    1123445555555554433321   2334445554444433221    0123344455555444


Q ss_pred             CCCcccccCCCCccEEEcCCCcCcccccccccCCCccceEeccccCCCChhhHhhcCCCCcEEEcCCCCCccccCCCcCC
Q psy16377        471 NLSSGMLYELPSLEVLNLSKNKIHQIEIGTFEKNKRLAAIRLDSNFLTDINGVFTYLAQLLWLNLSENHLVWFDYAMVPG  550 (1344)
Q Consensus       471 ~l~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~lp~  550 (1344)
                      .++    ..+++|++|++++|+++.++.    .+++|+.|+|++|+++.+|..   +++|+.|++++|+++.++  .+|.
T Consensus       278 ~~~----~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp--~~~~  344 (353)
T d1jl5a_         278 SLC----DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFP--DIPE  344 (353)
T ss_dssp             EEC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC--CCCT
T ss_pred             ccc----ccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCC--cccc
Confidence            332    234566666666666665542    245667777777777766542   456778888888877664  3677


Q ss_pred             CccEEEcC
Q psy16377        551 NLKWLDIH  558 (1344)
Q Consensus       551 ~L~~L~Ls  558 (1344)
                      +|+.|.+.
T Consensus       345 ~L~~L~~~  352 (353)
T d1jl5a_         345 SVEDLRMN  352 (353)
T ss_dssp             TCCEEECC
T ss_pred             ccCeeECc
Confidence            78877764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=182.27  Aligned_cols=217  Identities=24%  Similarity=0.307  Sum_probs=138.1

Q ss_pred             eEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCcCCc-cChhhhcCCCCCC
Q psy16377         20 ISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCKLVE-LPVDVFSGLRNLK   98 (1344)
Q Consensus        20 ~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~i~~-l~~~~f~~l~~L~   98 (1344)
                      +.+.|..+.++.+| ..+   + .+++.|++++|.+    .++++.+|.++++|++|+|++|.+.. +++.+|.++++++
T Consensus        11 ~~i~c~~~~l~~iP-~~l---~-~~l~~L~Ls~n~i----~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVTEIP-SDL---P-RNAIELRFVLTKL----RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             SEEEEESCSCSSCC-SCS---C-SCCSEEEEESCCC----CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             CEEEEeCCCCCCcC-CCC---C-CCCCEEECcCCcC----CccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            47999999999988 443   2 4689999999998    45787889999999999999998864 6777888899999


Q ss_pred             EEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChh-hhcCCCCCCEEECCCCCCCCCCCcchhhhcccc
Q psy16377         99 RLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDD-VFCSLANIQTLNLSRNSIRDIDTLGFAVRRASA  177 (1344)
Q Consensus        99 ~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~Ls~n~l~~l~~~~~~~~~~~~  177 (1344)
                      .|.+..++      ......+..|.++++|++|++++|.+...+.. .+..+..|..+...++.+..++...|..     
T Consensus        82 ~l~~~~~n------~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~-----  150 (242)
T d1xwdc1          82 EIRIEKAN------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-----  150 (242)
T ss_dssp             EEEEECCT------TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT-----
T ss_pred             cccccccc------cccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc-----
Confidence            98875322      11234566677888888888888877765542 2333455555555555555554443321     


Q ss_pred             ccCCCCccccCCCCcccEEECCCCCCCCCCCCccCCCCCCCCE-EEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCC
Q psy16377        178 ESNSGEKIECSGGMDLRILDLSHNKLRTLGDYSGITKFRRLQN-LHLENNEISQIAPNAFVALSSLRILNISSNHLVSLP  256 (1344)
Q Consensus       178 ~~~~~~~~~~~~l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~-L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~  256 (1344)
                                 ....++.|++++|+++.++.. .+. ..+++. +.+.+|.++.+.+..|.++++|++|+|++|+++.+|
T Consensus       151 -----------~~~~l~~L~l~~n~l~~i~~~-~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         151 -----------LSFESVILWLNKNGIQEIHNC-AFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             -----------SBSSCEEEECCSSCCCEECTT-TTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             -----------ccccceeeecccccccccccc-ccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence                       023566666666666665543 232 233333 334555555554455556666666666666666555


Q ss_pred             hhhhcCCCCCcEE
Q psy16377        257 EGLFSSCRDISEI  269 (1344)
Q Consensus       257 ~~~f~~l~~L~~L  269 (1344)
                      ...|.++++|+.+
T Consensus       218 ~~~~~~l~~L~~l  230 (242)
T d1xwdc1         218 SYGLENLKKLRAR  230 (242)
T ss_dssp             SSSCTTCCEEESS
T ss_pred             HHHHcCCcccccC
Confidence            5555444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.1e-16  Score=169.71  Aligned_cols=219  Identities=24%  Similarity=0.296  Sum_probs=136.3

Q ss_pred             ccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCC-CChhhhcCCCCCcEEEc
Q psy16377        193 LRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVS-LPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       193 L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~f~~l~~L~~L~L  271 (1344)
                      .+.++.++.+++.+|..  +.  +++++|+|++|.++.+.+.+|.++++|++|++++|.+.. ++...|.+++.++++.+
T Consensus        10 ~~~i~c~~~~l~~iP~~--l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSD--LP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSSCCSC--SC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCCcCCC--CC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            36788888888888864  32  578999999999988877788999999999999998765 67777888888888887


Q ss_pred             cc-CcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCC-cccEEEecCCC
Q psy16377        272 QK-NSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLV-FLQRLDLRNNS  349 (1344)
Q Consensus       272 ~~-n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~  349 (1344)
                      .. +.+..+++..|.++++|+.|++++|.+... .....+..+..+..+...++.+..+....|.+++ .++.|++++|.
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~-~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~  164 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  164 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSC-CCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             cccccccccccccccccccccccccchhhhccc-ccccccccccccccccccccccccccccccccccccceeeeccccc
Confidence            64 577777777788888888888888877641 1112223344444444455555555444444432 44455555555


Q ss_pred             ccccchhhhcCCCCccEEEccCCcccccccccccCCCceeEEEccCCcCCCCChhhhcCCCCCcEEEccCCCCCccch-h
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLSENRIHHITAHLFNGLYVLSKLTLSNNLLVNIDSKAFKNCSALKELDLSSNAIVEIPS-A  428 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~lp~-~  428 (1344)
                      +..+....|                        .....++.+.+.+|.++.+.+..|.++++|+.|+|++|+++.+|. .
T Consensus       165 l~~i~~~~~------------------------~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         165 IQEIHNCAF------------------------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             CCEECTTTT------------------------TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             ccccccccc------------------------cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence            544444333                        222222222344445555555555555566666666665555543 2


Q ss_pred             hcCCCCccEEEc
Q psy16377        429 LSELPFLKTLDL  440 (1344)
Q Consensus       429 l~~l~~L~~L~L  440 (1344)
                      |.++++|+.+++
T Consensus       221 ~~~l~~L~~l~~  232 (242)
T d1xwdc1         221 LENLKKLRARST  232 (242)
T ss_dssp             CTTCCEEESSSE
T ss_pred             HcCCcccccCcC
Confidence            344444444433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-17  Score=200.15  Aligned_cols=62  Identities=18%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             CCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccC----hhhhcCCCCCCEEECCCCCCC
Q psy16377         96 NLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSIS----DDVFCSLANIQTLNLSRNSIR  163 (1344)
Q Consensus        96 ~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~Ls~n~l~  163 (1344)
                      +|+.|+++++++..   .   .+...+..+++|++|+|++|.|+...    ..++..+++|++|+|++|.|+
T Consensus         3 ~l~~ld~~~~~i~~---~---~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~   68 (460)
T d1z7xw1           3 DIQSLDIQCEELSD---A---RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG   68 (460)
T ss_dssp             EEEEEEEESCCCCH---H---HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred             CCCEEEeeCCcCCh---H---HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC
Confidence            45666665555432   0   01112333456666666666555221    123455666666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.5e-17  Score=195.75  Aligned_cols=348  Identities=20%  Similarity=0.186  Sum_probs=174.1

Q ss_pred             cccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCc----ChhhhcCCCCccEEEeeCCCCCCCC-----hhhhcC
Q psy16377        192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQI----APNAFVALSSLRILNISSNHLVSLP-----EGLFSS  262 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~-----~~~f~~  262 (1344)
                      +|+.||+++|+++...-...+..+++|++|+|++|.++..    ++.++..+++|++|+|++|.++...     ..+...
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            6888889888887643222356678888888888887743    2345677888888888888775321     111123


Q ss_pred             CCCCcEEEcccCcccccCh----hhhcCCCCCCEEEccCCCCCCCCCCcccc-----cCCCcccEEEccCCCCCccc---
Q psy16377        263 CRDISEIYAQKNSLVELSR----GLFHKLEQLLVLDLSSNHLSSNHIDETTF-----IGLIRLIILNLSNNELTRID---  330 (1344)
Q Consensus       263 l~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~-----~~l~~L~~L~Ls~n~l~~~~---  330 (1344)
                      ..+|++|+|++|.++....    ..+..+++|++|++++|.+...  ....+     ........+...........   
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  160 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA--GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  160 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH--HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhh--hhhhhhhcccccccccccccccccccchhhhcc
Confidence            4568888888887765432    2345677888888887776431  01111     11122233333333222111   


Q ss_pred             -cccccCCCcccEEEecCCCccccch-----hhhcCCCCccEEEccCCccccccc----ccccCCCceeEEEccCCcCCC
Q psy16377        331 -AKTFKDLVFLQRLDLRNNSIGYIED-----NAFLSLYNLHTIYLSENRIHHITA----HLFNGLYVLSKLTLSNNLLVN  400 (1344)
Q Consensus       331 -~~~~~~l~~L~~L~Ls~n~l~~i~~-----~~f~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~  400 (1344)
                       ...+.....++.++++.+.+.....     ...........+.+..+.+.....    ..+.....++.+.+.+|.+..
T Consensus       161 ~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~  240 (460)
T d1z7xw1         161 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD  240 (460)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccc
Confidence             1112233456666666655432110     011122344555555554432211    122334555666666655422


Q ss_pred             C-----ChhhhcCCCCCcEEEccCCCCCc-----cchhhcCCCCccEEEccCCCCCccCcchh-----cCCCCCcEEEcc
Q psy16377        401 I-----DSKAFKNCSALKELDLSSNAIVE-----IPSALSELPFLKTLDLGENQISKIENGSF-----KNLQQLTDLRLV  465 (1344)
Q Consensus       401 ~-----~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~  465 (1344)
                      .     ....+.....++.|++++|.+..     ....+...+.++.+++++|.+.......+     .....|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~  320 (460)
T d1z7xw1         241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK  320 (460)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             cccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccc
Confidence            1     11222334556666666665542     12234445566666666665543222111     123455666666


Q ss_pred             cCCCCCCCcc----cccCCCCccEEEcCCCcCcccccc----cc-cCCCccceEeccccCCCC-----hhhHhhcCCCCc
Q psy16377        466 DNNIGNLSSG----MLYELPSLEVLNLSKNKIHQIEIG----TF-EKNKRLAAIRLDSNFLTD-----INGVFTYLAQLL  531 (1344)
Q Consensus       466 ~n~l~~l~~~----~~~~l~~L~~L~Ls~n~i~~~~~~----~~-~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~  531 (1344)
                      +|.++.....    .+...++|++|+|++|++......    .+ ...+.|+.|+|++|.+++     ++..+..+++|+
T Consensus       321 ~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~  400 (460)
T d1z7xw1         321 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR  400 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC
T ss_pred             ccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCC
Confidence            6555332211    122344566666666555432111    11 123445555555555543     233444555555


Q ss_pred             EEEcCCCCCc
Q psy16377        532 WLNLSENHLV  541 (1344)
Q Consensus       532 ~L~Ls~n~l~  541 (1344)
                      +|+|++|+++
T Consensus       401 ~L~Ls~N~i~  410 (460)
T d1z7xw1         401 ELDLSNNCLG  410 (460)
T ss_dssp             EEECCSSSCC
T ss_pred             EEECCCCcCC
Confidence            5555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.2e-16  Score=165.87  Aligned_cols=144  Identities=19%  Similarity=0.323  Sum_probs=125.4

Q ss_pred             CCCCCCcccccCCCCceeEEEEecccccCCCCCCccccCCCcceEEEeeeCcccccccCCCcccccCCCCCCEEEeeCCc
Q psy16377          3 EVPENCSWKMENESMNRISVTCNLNYLGKGGGSNLSFVPTDLITKLNIDCDATVLLDSSITTKSFQNIYSLEELKISNCK   82 (1344)
Q Consensus         3 ~~~~~c~~~~~~~~~~~~~~~c~~~~l~~~~~~~l~~~~~~~l~~L~L~~~~~~~~~~~l~~~~f~~l~~L~~L~Ls~~~   82 (1344)
                      .||.+|.|..       ..|.|..++++.+| .++   + .++++|+|++|.+.   ..++...|.++++|++|+|++|+
T Consensus         1 ~CP~~C~C~~-------~~v~Cs~~~L~~iP-~~l---p-~~l~~L~Ls~N~i~---~~~~~~~f~~l~~L~~L~L~~N~   65 (192)
T d1w8aa_           1 DCPAMCHCEG-------TTVDCTGRGLKEIP-RDI---P-LHTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQ   65 (192)
T ss_dssp             CCCTTSEEET-------TEEECTTSCCSSCC-SCC---C-TTCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSC
T ss_pred             CcCCCCEEcC-------CEEEEeCCCcCccC-CCC---C-CCCCEEEeCCCCCc---ccccccccCCCceEeeeeccccc
Confidence            4999999952       26899999999998 544   3 67999999999983   34677899999999999999999


Q ss_pred             CCccChhhhcCCCCCCEEEcccccCcccCCcccccCCCcCCCCCCCCEEEccCCCCCccChhhhcCCCCCCEEECCCCCC
Q psy16377         83 LVELPVDVFSGLRNLKRLTINTRNLQWDKSKKLDLVPGSLDGLRELQVLNISSSNIKSISDDVFCSLANIQTLNLSRNSI  162 (1344)
Q Consensus        83 i~~l~~~~f~~l~~L~~L~Ls~n~~~~~~~~~l~~~p~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~Ls~n~l  162 (1344)
                      +..++.+.|..+++|++|+|++|.+.       .+.+.+|.++++|++|+|++|.|+.+++++|..+++|++|+|++|.+
T Consensus        66 i~~~~~~~~~~~~~L~~L~Ls~N~l~-------~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          66 LTGIEPNAFEGASHIQELQLGENKIK-------EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCBCTTTTTTCTTCCEEECCSCCCC-------EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccccccccccccceeeecccccc-------ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            99999999999999999999877664       35677899999999999999999999999999999999999999988


Q ss_pred             CCCCCc
Q psy16377        163 RDIDTL  168 (1344)
Q Consensus       163 ~~l~~~  168 (1344)
                      ......
T Consensus       139 ~~~~~~  144 (192)
T d1w8aa_         139 NCNCHL  144 (192)
T ss_dssp             CCSGGG
T ss_pred             ccccch
Confidence            755443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.3e-15  Score=162.76  Aligned_cols=163  Identities=21%  Similarity=0.391  Sum_probs=63.3

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +++|++|++++|.++.+.   .+..+++|+.+++++|.++.+  ..+.++++|+.++++++....++.  +...+.++.+
T Consensus        62 l~~L~~L~ls~n~i~~~~---~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l  134 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVL  134 (227)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred             CCCCcEeecCCceeeccc---ccccccccccccccccccccc--ccccccccccccccccccccccch--hccccchhhh
Confidence            334444444444433332   133444444444444444332  123444444444444443333221  2233334444


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      .++.+.+....+  +.++++|+.|++++|.+..    ...+.++++|+.|++++|.++.+.+  ++++++|+.|+|++|.
T Consensus       135 ~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~----~~~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSD----LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred             hchhhhhchhhh--hcccccccccccccccccc----chhhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCc
Confidence            444333332221  2334444444444444332    1223344444444444444433321  3344444444444444


Q ss_pred             ccccchhhhcCCCCccEEEc
Q psy16377        350 IGYIEDNAFLSLYNLHTIYL  369 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~L  369 (1344)
                      ++.+++  +.++++|+.|++
T Consensus       207 lt~i~~--l~~l~~L~~L~l  224 (227)
T d1h6ua2         207 ISDVSP--LANTSNLFIVTL  224 (227)
T ss_dssp             CCBCGG--GTTCTTCCEEEE
T ss_pred             CCCCcc--cccCCCCCEEEe
Confidence            443332  334444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=2.5e-15  Score=162.39  Aligned_cols=100  Identities=17%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             cccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEEEc
Q psy16377        192 DLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEIYA  271 (1344)
Q Consensus       192 ~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L~L  271 (1344)
                      ++..++++.+++++..   .++.+.+|+.|++.+|.|+.+  ..+..+++|++|++++|.+..+.+  |..+++|+.+++
T Consensus        20 ~~~~~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~   92 (227)
T d1h6ua2          20 NAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL   92 (227)
T ss_dssp             HHHHHHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred             HHHHHHhCCCCcCCcC---CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccc
Confidence            3344556666665543   245566677777777777665  246667777777777776665543  455566666666


Q ss_pred             ccCcccccChhhhcCCCCCCEEEccCCCC
Q psy16377        272 QKNSLVELSRGLFHKLEQLLVLDLSSNHL  300 (1344)
Q Consensus       272 ~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l  300 (1344)
                      ++|.++.++.  +..+++|+.++++++..
T Consensus        93 ~~n~~~~i~~--l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          93 SGNPLKNVSA--IAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             CSCCCSCCGG--GTTCTTCCEEECTTSCC
T ss_pred             cccccccccc--ccccccccccccccccc
Confidence            6555554432  34555555555555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.1e-14  Score=151.50  Aligned_cols=161  Identities=23%  Similarity=0.427  Sum_probs=98.1

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +.+|++|++++|.++.+.   ++..+++|++|++++|.++++.+  ++++++|++|++++|.+..++.  +.+++.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l~---~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID---GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCcc---ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc--cccccccccc
Confidence            456777777777776653   35667777777777777766532  6677777777777776666553  5666666666


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      +++++.+..++.  +..+++|+.|++++|.+..    ...+..+++|+.|++.+|.++.+.+  ++++++|+.|++++|.
T Consensus       112 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~----~~~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         112 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD----ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK  183 (199)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC----CGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--cchhhhhHHhhhhhhhhcc----cccccccccccccccccccccCCcc--ccCCCCCCEEECCCCC
Confidence            666666555432  4556666666666666543    2345556666666666666555432  5555556666666655


Q ss_pred             ccccchhhhcCCCCccEE
Q psy16377        350 IGYIEDNAFLSLYNLHTI  367 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L  367 (1344)
                      ++.++.  +..+++|++|
T Consensus       184 i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         184 VSDISV--LAKLTNLESL  199 (199)
T ss_dssp             CCCCGG--GGGCTTCSEE
T ss_pred             CCCCcc--ccCCCCCCcC
Confidence            555432  4455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=1.8e-14  Score=153.36  Aligned_cols=34  Identities=32%  Similarity=0.477  Sum_probs=13.6

Q ss_pred             ccCCCcccEEEccCCCCCccccccccCCCcccEEEe
Q psy16377        310 FIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDL  345 (1344)
Q Consensus       310 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  345 (1344)
                      +.++++|+.|++++|.++.+.  .+.++++|+.|+|
T Consensus       174 l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L  207 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLEL  207 (210)
T ss_dssp             GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEE
T ss_pred             ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEc
Confidence            333444444444444443331  2344444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3e-14  Score=150.21  Aligned_cols=139  Identities=22%  Similarity=0.408  Sum_probs=66.4

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +++|++|++++|+++.++   .++++++|+.|++++|.+..+.  .+.++++|+.|+++++.+..++.  +..+++|+.|
T Consensus        61 l~nL~~L~Ls~N~l~~~~---~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  133 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT---PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL  133 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred             CCCcCcCccccccccCcc---cccCCccccccccccccccccc--ccccccccccccccccccccccc--cchhhhhHHh
Confidence            344445555554444433   1444455555555555444431  24445555555555544443322  3444555555


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEE
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRL  343 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  343 (1344)
                      ++++|.+..++.  +..+++|+.|++.+|.+++  +  ..+.++++|+.|++++|+++.+.  .++.+++|++|
T Consensus       134 ~l~~n~l~~~~~--l~~~~~L~~L~l~~n~l~~--l--~~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         134 ELSSNTISDISA--LSGLTSLQQLNFSSNQVTD--L--KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC--C--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             hhhhhhhccccc--ccccccccccccccccccC--C--ccccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence            555555444332  3455555555555555543  1  23455555555555555555442  24455555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=3.3e-14  Score=151.23  Aligned_cols=164  Identities=23%  Similarity=0.348  Sum_probs=111.9

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCCCCCCCChhhhcCCCCCcEE
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSNHLVSLPEGLFSSCRDISEI  269 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~f~~l~~L~~L  269 (1344)
                      +.+|+.|++++|.++.+.   ++..+++|++|+|++|.++++.  .++.+++|++|++++|.++.++.  +..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~---~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch---hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccccc--cccccccccc
Confidence            456788888888877765   3667788888888888887763  36777888888888887777653  5667777777


Q ss_pred             EcccCcccccChhhhcCCCCCCEEEccCCCCCCCCCCcccccCCCcccEEEccCCCCCccccccccCCCcccEEEecCCC
Q psy16377        270 YAQKNSLVELSRGLFHKLEQLLVLDLSSNHLSSNHIDETTFIGLIRLIILNLSNNELTRIDAKTFKDLVFLQRLDLRNNS  349 (1344)
Q Consensus       270 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~n~l~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  349 (1344)
                      ++.+|.+..++.  +..+++|+.+++++|.++.    ...+..+++|+.+++++|.++.+.+  +.++++|+.|++++|.
T Consensus       118 ~l~~~~~~~~~~--l~~l~~l~~l~~~~n~l~~----~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         118 SLEHNGISDING--LVHLPQLESLYLGNNKITD----ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--ccccccccccccccccccc----ccccccccccccccccccccccccc--ccCCCCCCEEECCCCC
Confidence            777777666543  4667777777777777654    2345556667777777776665532  5566666666666666


Q ss_pred             ccccchhhhcCCCCccEEEcc
Q psy16377        350 IGYIEDNAFLSLYNLHTIYLS  370 (1344)
Q Consensus       350 l~~i~~~~f~~l~~L~~L~Ls  370 (1344)
                      ++.++  .|.++++|+.|+|+
T Consensus       190 i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         190 ISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCBCG--GGTTCTTCSEEEEE
T ss_pred             CCCCh--hhcCCCCCCEEEcc
Confidence            66554  35666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.1e-14  Score=142.00  Aligned_cols=115  Identities=23%  Similarity=0.241  Sum_probs=87.0

Q ss_pred             CCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCC
Q psy16377        797 FIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQ  876 (1344)
Q Consensus       797 f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  876 (1344)
                      |.+..+|+.|+|++|+|+.|. ..+.++++|+.|+|++|+|+.++  .|..+++|++|+|++|+|+.+++..|..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            556667778888888887774 45677788888888888888774  377788888888888888888777777778888


Q ss_pred             EEEccCCCCccccc-ccccCCCCCcEEEecCCcccCCCh
Q psy16377        877 VLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCSCA  914 (1344)
Q Consensus       877 ~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C~  914 (1344)
                      .|+|++|+|+.++. ..+..+++|++|++++||+.....
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccc
Confidence            88888888877765 456677888888888888755544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.5e-13  Score=137.44  Aligned_cols=125  Identities=18%  Similarity=0.191  Sum_probs=112.4

Q ss_pred             CCCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceee
Q psy16377        776 PMDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELY  855 (1344)
Q Consensus       776 p~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  855 (1344)
                      +..+++|+|.+|+|+.++ ..+..+++|+.|+|++|+|+.+.  .|.++++|++|+|++|+++.+++..|..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            346899999999999996 46788999999999999999984  589999999999999999999998899999999999


Q ss_pred             ccccccccccC-ccccCCCCCCEEEccCCCCccccc---ccccCCCCCcEEE
Q psy16377        856 LQENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRA---FDLNTNSMLRKVY  903 (1344)
Q Consensus       856 L~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~---~~l~~~~~L~~L~  903 (1344)
                      |++|+|+.++. ..+..+++|++|++++|.++.++.   ..+..+++|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999876 678899999999999999988874   4567789998876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=2.5e-13  Score=130.61  Aligned_cols=104  Identities=23%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             EEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCCCEEEccCCC
Q psy16377        805 SLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISLQVLQLDGNR  884 (1344)
Q Consensus       805 ~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~L~L~~N~  884 (1344)
                      +|+|++|+|+.+.  .+.++++|++|+|++|+|+.+++ .|..+++|+.|+|++|+|+.++  .|..+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCCc
Confidence            4555555555443  24555555555555555555543 3555555555555555555553  24555555555555555


Q ss_pred             Cccccc-ccccCCCCCcEEEecCCcccCCC
Q psy16377        885 LKSFRA-FDLNTNSMLRKVYLGNNPFSCSC  913 (1344)
Q Consensus       885 l~~~~~-~~l~~~~~L~~L~l~~Np~~C~C  913 (1344)
                      |+.++. ..+..+++|+.|++++||+....
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            555543 33445555555555555555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.7e-13  Score=129.45  Aligned_cols=118  Identities=19%  Similarity=0.217  Sum_probs=102.9

Q ss_pred             cEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeecccc
Q psy16377        780 THVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQEN  859 (1344)
Q Consensus       780 ~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N  859 (1344)
                      +.|+|++|+++.++.  +.++++|+.|++++|+|+.+++ .|.++++|++|++++|+|+.++  .|..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            468999999999974  7889999999999999999864 6899999999999999999986  4899999999999999


Q ss_pred             ccccccC-ccccCCCCCCEEEccCCCCcccc---cccccCCCCCcEE
Q psy16377        860 RIEYIAN-GTFNALISLQVLQLDGNRLKSFR---AFDLNTNSMLRKV  902 (1344)
Q Consensus       860 ~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~---~~~l~~~~~L~~L  902 (1344)
                      +|+.++. ..+..+++|++|+|++|+++..+   ......+++++.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999975 67889999999999999998754   3334446777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4e-13  Score=149.89  Aligned_cols=109  Identities=25%  Similarity=0.305  Sum_probs=61.8

Q ss_pred             CCcccEEECCCCCCCCCCCCccCCCCCCCCEEEccCCCCCCcChhhhcCCCCccEEEeeCC-CCCCCC-hhhhcCCCCCc
Q psy16377        190 GMDLRILDLSHNKLRTLGDYSGITKFRRLQNLHLENNEISQIAPNAFVALSSLRILNISSN-HLVSLP-EGLFSSCRDIS  267 (1344)
Q Consensus       190 l~~L~~LdLs~n~l~~l~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~f~~l~~L~  267 (1344)
                      ..+|++||++++.++.-.....+..+++|++|+|++|.+.+..+..++.+++|++|++++| .++... ..++.++++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4567777777776653211113566777777777777777666667777777777777775 333211 12234566666


Q ss_pred             EEEcccC-cccc--cChhhhcCCCCCCEEEccCC
Q psy16377        268 EIYAQKN-SLVE--LSRGLFHKLEQLLVLDLSSN  298 (1344)
Q Consensus       268 ~L~L~~n-~l~~--l~~~~~~~l~~L~~L~Ls~n  298 (1344)
                      +|++++| .++.  +.......+++|+.|+++++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             ccccccccccccccchhhhcccccccchhhhccc
Confidence            6666664 2321  11112233456666666553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.1e-12  Score=143.96  Aligned_cols=61  Identities=33%  Similarity=0.299  Sum_probs=33.1

Q ss_pred             cCCCceeEEEccCCc-CCCCChhhhcCCCCCcEEEccCC-CCC-ccchhhcCCCCccEEEccCC
Q psy16377        383 NGLYVLSKLTLSNNL-LVNIDSKAFKNCSALKELDLSSN-AIV-EIPSALSELPFLKTLDLGEN  443 (1344)
Q Consensus       383 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~lp~~l~~l~~L~~L~Ls~n  443 (1344)
                      .++++|++|++++|. +++.....+..+++|++|++++| .++ .....++.+++|++|++++|
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            345555555555542 44333444555666666666664 333 22334556666677766665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.5e-11  Score=123.16  Aligned_cols=115  Identities=18%  Similarity=0.326  Sum_probs=92.9

Q ss_pred             ccEEEcCCCcCCCCCccccccCCCcccEEECCCC-ccccccccccc--CcccEEEcCCCcCCccCCCCCCCCCCccEEEe
Q psy16377        552 LKWLDIHGNYISSLNNYYEIKDGLSIKNLDASHN-RILEISELSIP--NSVEVLFINNNLIKSVKPHTFFDKSNLARVDI  628 (1344)
Q Consensus       552 L~~L~Ls~n~l~~l~~~~~l~~~~~L~~L~Ls~N-~l~~~~~~~~~--~sL~~L~Ls~N~i~~~~~~~f~~~~~L~~LdL  628 (1344)
                      .+.++.+++++.+++.  .+..+++|++|++++| .++.+.+..+.  .+|+.|+|++|+|+.+.+.+|.++++|++|+|
T Consensus        10 ~~~l~c~~~~~~~~p~--~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCSSCCCTTTT--TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecCCCCccCcc--cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3446666666665543  3455678999999766 58887766554  58999999999999999999999999999999


Q ss_pred             cCCCCcccccccccccCCCCCCCCCeEEcCCCcccccccCcccccc
Q psy16377        629 YANDITKLDLTALRLKPVPQNKTLPEFYLGGNPFDCDCSMDWLPII  674 (1344)
Q Consensus       629 ~~N~l~~l~~~~l~~~~~~~~~~l~~l~l~~Np~~C~c~~~~l~~~  674 (1344)
                      ++|+|+.++...++.      ..+..+++++|||.|+|.+.|+...
T Consensus        88 s~N~l~~l~~~~~~~------~~l~~L~L~~Np~~C~C~~~~l~~~  127 (156)
T d2ifga3          88 SFNALESLSWKTVQG------LSLQELVLSGNPLHCSCALRWLQRW  127 (156)
T ss_dssp             CSSCCSCCCSTTTCS------CCCCEEECCSSCCCCCGGGHHHHHH
T ss_pred             cCCCCcccChhhhcc------ccccccccCCCcccCCchHHHHHHH
Confidence            999999998877642      2588999999999999999998764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.21  E-value=9.9e-12  Score=142.75  Aligned_cols=132  Identities=23%  Similarity=0.285  Sum_probs=58.1

Q ss_pred             CCCCcEEEccCCCCC-----ccchhhcCCCCccEEEccCCCCCcc-----CcchhcCCCCCcEEEcccCCCCCCC----c
Q psy16377        409 CSALKELDLSSNAIV-----EIPSALSELPFLKTLDLGENQISKI-----ENGSFKNLQQLTDLRLVDNNIGNLS----S  474 (1344)
Q Consensus       409 l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~----~  474 (1344)
                      .+.|+.|.+++|.+.     .+...+..++.|++|++++|.+...     ....+..+++|+.|++++|.++...    .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            345555555555443     1223344455555555555555432     1122344455555555555542210    1


Q ss_pred             ccccCCCCccEEEcCCCcCcccccccc----c--CCCccceEeccccCCCC-----hhhHhh-cCCCCcEEEcCCCCC
Q psy16377        475 GMLYELPSLEVLNLSKNKIHQIEIGTF----E--KNKRLAAIRLDSNFLTD-----INGVFT-YLAQLLWLNLSENHL  540 (1344)
Q Consensus       475 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~----~--~l~~L~~L~L~~n~l~~-----l~~~~~-~l~~L~~L~Ls~n~l  540 (1344)
                      ..+..+++|++|++++|.|+......+    .  ..+.|+.|++++|.++.     +...+. ++++|+.|+|++|.+
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            123445555555555555544322111    1  12345555555555442     122221 344455555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=1.3e-11  Score=141.71  Aligned_cols=41  Identities=12%  Similarity=0.062  Sum_probs=20.8

Q ss_pred             hhcCCCCccEEEeeCCCCCCCC----hhhhcCCCCCcEEEcccCc
Q psy16377        235 AFVALSSLRILNISSNHLVSLP----EGLFSSCRDISEIYAQKNS  275 (1344)
Q Consensus       235 ~~~~l~~L~~L~Ls~n~l~~l~----~~~f~~l~~L~~L~L~~n~  275 (1344)
                      .+.+...|+.|+|++|.+....    ...+...++|+.|++.++.
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            3455566667777666554211    1123344555555555443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=5.3e-12  Score=132.13  Aligned_cols=112  Identities=24%  Similarity=0.378  Sum_probs=96.9

Q ss_pred             cCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeeccccccccccCccccCCCCC
Q psy16377        796 VFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYLQENRIEYIANGTFNALISL  875 (1344)
Q Consensus       796 ~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L  875 (1344)
                      .|..+++|+.|+|++|+|+.+.  .|.++++|+.|+|++|.|+.+++ .+..+++|+.|++++|+|+.++  .+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHS
T ss_pred             HHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccccccccccccccc--cccccccc
Confidence            4677899999999999999985  48899999999999999998864 4555778999999999999985  36778999


Q ss_pred             CEEEccCCCCccccc-ccccCCCCCcEEEecCCcccCC
Q psy16377        876 QVLQLDGNRLKSFRA-FDLNTNSMLRKVYLGNNPFSCS  912 (1344)
Q Consensus       876 ~~L~L~~N~l~~~~~-~~l~~~~~L~~L~l~~Np~~C~  912 (1344)
                      ++|+|++|+|+.++. ..+..+++|+.|+|++||+.+.
T Consensus       118 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccchhccccccccccCCCccceeecCCCccccC
Confidence            999999999999865 5578899999999999997653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=6.7e-12  Score=131.34  Aligned_cols=122  Identities=24%  Similarity=0.279  Sum_probs=102.5

Q ss_pred             CCccEEEEeCCcccccCCCcCCCCCCccEEEccCCcccccccchhcCCCccceeecccccccccCcccccCccccceeec
Q psy16377        777 MDATHVYLDGNTFKTIPNHVFIGRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYGYEFDNLEKLSELYL  856 (1344)
Q Consensus       777 ~~l~~L~L~~n~l~~l~~~~f~~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  856 (1344)
                      ..+++|+|++|+|+.++.  |.++++|+.|+|++|+|+.+. ..+..+++|+.|++++|+|+.++  .+..+++|+.|+|
T Consensus        48 ~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~-~~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCS-SHHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEE
T ss_pred             cccceeECcccCCCCccc--ccCCccccChhhccccccccc-ccccccccccccccccccccccc--ccccccccccccc
Confidence            468999999999999963  888999999999999999885 34556678999999999999985  4888999999999


Q ss_pred             cccccccccC-ccccCCCCCCEEEccCCCCccccccc----------ccCCCCCcEEE
Q psy16377        857 QENRIEYIAN-GTFNALISLQVLQLDGNRLKSFRAFD----------LNTNSMLRKVY  903 (1344)
Q Consensus       857 ~~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~----------l~~~~~L~~L~  903 (1344)
                      ++|+|+.++. ..|..+++|+.|+|++|++.......          +..+++|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999865 67899999999999999987755432          33456666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6e-08  Score=97.11  Aligned_cols=81  Identities=26%  Similarity=0.318  Sum_probs=42.9

Q ss_pred             cccCccccceeeccccccccccC--ccccCCCCCCEEEccCCCCcccccccccCCCCCcEEEecCCcccCCChhhHHHHH
Q psy16377        844 EFDNLEKLSELYLQENRIEYIAN--GTFNALISLQVLQLDGNRLKSFRAFDLNTNSMLRKVYLGNNPFSCSCATLQELQT  921 (1344)
Q Consensus       844 ~f~~l~~L~~L~L~~N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~~l~~~~~L~~L~l~~Np~~C~C~~l~~l~~  921 (1344)
                      .+..+++|++|+|++|+|+.+++  ..+..+++|+.|+|++|+|+.+++-.+.....|+.|++.+||+.+.......++.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            33445555555555555555532  3344556666666666666665553333334566677777777665432233444


Q ss_pred             HHh
Q psy16377        922 WII  924 (1344)
Q Consensus       922 w~~  924 (1344)
                      .+.
T Consensus       140 ~i~  142 (162)
T d1koha1         140 AIR  142 (162)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.5e-07  Score=94.14  Aligned_cols=104  Identities=18%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             CCCCccEEEccCCcccccccchhcCCCccceeecccccccccCc--ccccCccccceeeccccccccccCccccCCCCCC
Q psy16377        799 GRKNMLSLYVNNSQIEVILNQTFNGLSSLQVLHLENNLITHFYG--YEFDNLEKLSELYLQENRIEYIANGTFNALISLQ  876 (1344)
Q Consensus       799 ~l~~L~~L~l~~n~i~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~  876 (1344)
                      .+..+..+...++.+..+ ...+..+++|++|+|++|+|+.+.+  ..+..+++|+.|+|++|+|+++++..+.....|+
T Consensus        40 ~~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          40 AQNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE  118 (162)
T ss_dssp             TTTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCS
T ss_pred             hccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccc
Confidence            334444444444444433 5567789999999999999999864  5578899999999999999999887776777899


Q ss_pred             EEEccCCCCccccc-------ccccCCCCCcEEE
Q psy16377        877 VLQLDGNRLKSFRA-------FDLNTNSMLRKVY  903 (1344)
Q Consensus       877 ~L~L~~N~l~~~~~-------~~l~~~~~L~~L~  903 (1344)
                      .|+|++|.+.....       ..+..+|+|+.||
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            99999999987543       3355678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00038  Score=68.92  Aligned_cols=87  Identities=14%  Similarity=0.138  Sum_probs=42.1

Q ss_pred             CCCCCcEEEccCC-CCC-----ccchhhcCCCCccEEEccCCCCCccCc----chhcCCCCCcEEEcccCCCCCCCc---
Q psy16377        408 NCSALKELDLSSN-AIV-----EIPSALSELPFLKTLDLGENQISKIEN----GSFKNLQQLTDLRLVDNNIGNLSS---  474 (1344)
Q Consensus       408 ~l~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~l~~---  474 (1344)
                      +.++|++|+|+++ .+.     .+-..+...+.|++|+|++|.+.....    ..+...+.|+.|+|++|.++.-..   
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3456666666653 343     123345556666666666666654222    223334555555555555432111   


Q ss_pred             -ccccCCCCccEEEcCCCcCc
Q psy16377        475 -GMLYELPSLEVLNLSKNKIH  494 (1344)
Q Consensus       475 -~~~~~l~~L~~L~Ls~n~i~  494 (1344)
                       ..+...++|++|++++|.+.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHhCCcCCEEECCCCcCC
Confidence             12334455555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.96  E-value=0.00053  Score=67.86  Aligned_cols=13  Identities=31%  Similarity=0.133  Sum_probs=7.2

Q ss_pred             CCCCccEEEcCCC
Q psy16377        479 ELPSLEVLNLSKN  491 (1344)
Q Consensus       479 ~l~~L~~L~Ls~n  491 (1344)
                      ..++|+.|+++.+
T Consensus       129 ~n~sL~~l~l~~~  141 (167)
T d1pgva_         129 ENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCCC
T ss_pred             hCCCccEeeCcCC
Confidence            3455666666544

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.00011  Score=71.31  Aligned_cols=43  Identities=26%  Similarity=0.607  Sum_probs=33.5

Q ss_pred             HHHhhhheeeeeeecccccCCccchhH---HHHHHH-hcccEEEEec
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDF---LIEAAE-ASRRVILVLT 1125 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~---i~~~i~-~srr~i~vls 1125 (1344)
                      +|++.|+++|+|+|++|++++||+.|.   ++.+++ +.+++|.|+-
T Consensus        56 ~~i~~S~~~i~vlS~~~l~s~wc~~E~~~a~~~~~~~~~~~iIpV~l  102 (149)
T d1fyxa_          56 DSIEKSHKTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILL  102 (149)
T ss_dssp             HHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEES
T ss_pred             HHHHhCCEEEEEEcCccccccchHHHHHHHHHHHHHcCCceEEEEEe
Confidence            578899999999999999999999876   344444 4566666653

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.00041  Score=68.10  Aligned_cols=44  Identities=32%  Similarity=0.567  Sum_probs=33.3

Q ss_pred             HHHhhhheeeeeeecccccCCccchhHHHH---HHH-hcccEEEEecc
Q psy16377       1083 EAAEASRRVILVLTKNFLQTEWSRSDFLIE---AAE-ASRRVILVLTK 1126 (1344)
Q Consensus      1083 ~~~~~s~~~i~vls~~~~~~~w~~~~~i~~---~i~-~srr~i~vls~ 1126 (1344)
                      +||+.|+++|+|+|++|++++||+.|.-..   +++ +.+|+|.|+-.
T Consensus        61 ~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a~~~~~~~~~~~lIpV~l~  108 (161)
T d1fyva_          61 TCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLE  108 (161)
T ss_dssp             HHHHHEEEEEEEESHHHHHHTSHHHHHHTTSCCCSCSSCSSEEEEESS
T ss_pred             HHHHhCCEEEEEecCccccChHHHHHHHHHHHHHHHcCCCceeEEEEe
Confidence            578899999999999999999999876222   223 35567777743

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.07  E-value=0.0035  Score=61.59  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             cCCCCCcEEEccC-CCCC-----ccchhhcCCCCccEEEccCCCCCccCcc----hhcCCCCCcEEEcccCCC
Q psy16377        407 KNCSALKELDLSS-NAIV-----EIPSALSELPFLKTLDLGENQISKIENG----SFKNLQQLTDLRLVDNNI  469 (1344)
Q Consensus       407 ~~l~~L~~L~Ls~-n~l~-----~lp~~l~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l  469 (1344)
                      .+.++|++|+|++ +.++     .+-..+...+.|++|++++|.+......    .+...++++.+++.+|.+
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3445666666665 3343     2334455666666667766666543222    233344455555554444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.68  E-value=0.003  Score=62.06  Aligned_cols=13  Identities=8%  Similarity=-0.031  Sum_probs=6.9

Q ss_pred             CCCCccEEEcCCC
Q psy16377        479 ELPSLEVLNLSKN  491 (1344)
Q Consensus       479 ~l~~L~~L~Ls~n  491 (1344)
                      ..++|+.|+++.+
T Consensus       130 ~n~~L~~L~l~~~  142 (166)
T d1io0a_         130 KNTTLLKFGYHFT  142 (166)
T ss_dssp             HCSSCCEEECCCS
T ss_pred             hCCCcCEEeCcCC
Confidence            4455555555544