Psyllid ID: psy16378

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
MTQLDNKPLDNGNKLRRVIQKFLNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
ccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHc
ccccccccccccHHHHHHHHHHHHHHHHHcccHHHcccEEEEEcEEEEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHEHHHHHccccHHHHHHHcHHHHHHHHHHHc
mtqldnkpldngnKLRRVIQKFLNtsainnlpptttattTVFTHFVassvdtqttwgsnYTTVLFnvttpspeffsnlttmvtptspyfldkeprfttTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTIlgywplgpmvcdTWLALDYLASNASVLNLLIISFDRyfsvtrpltyraKRTTKRAACMIVTAWGVsmilwppwifawpyiegerrvpyyECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLqaagkkdsskrstsrinrkprpfsrKFIQEWCIAWWhsgreedpdcdlddtpsdiggyatpvsvetpvtscvsrctslnvikdstkqqtpptrihHVYTILIrlpletdgsgdqpsikmipdenlprlgkhpdfpaqnaaalnrrpshisdiriplNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKpittcsecipnglwDFFYYLCYinstinpvCYALCNDAFRATYIRILT
mtqldnkpldngnKLRRVIQKFlntsainnlpptTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRyfsvtrpltyrakrttkRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKefsnlqaagkkdsskrstsrinrkprpfsrkfIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSlnvikdstkqqtpptriHHVYTILIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNaaalnrrpshisDIRIPLNAKMMNKNAKLlgkqvalgkkkkksqekkaerkAAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
MTQLDNKPLDNGNKLRRVIQKFLNTSAINNLPPtttatttvfthfvaSSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEdpdcdlddtpsdIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNakllgkqvalgkkkkksqekkaerkaakTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
****************************************VFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYK************************************RKFIQEWCIAWWHSG***************IGGYATPVSVETPVTSCVSRCTSLNVIKD*******PTRIHHVYTILIRLPL*************************************************************************************KTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRIL*
******KPLDNGNKLRRVIQKFLNTS****L***TTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKET*************************************************************************************************************ILIRLPLETDG************************************************************************EKKAERKAAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
MTQLDNKPLDNGNKLRRVIQKFLNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKR************************RKPRPFSRKFIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLLGKQV*****************AAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
***LDNKPLDNGNKLRRVIQKFLNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVT***P*******************************NILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKE*********************************************************************************************************************************************************************************LGKKKKKSQEKKAERKAAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
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MTQLDNKPLDNGNKLRRVIQKFLNTSAINNLPPTTTATTTVFTHFVASSVDTQTTWGSNYTTVLFNVTTPSPEFFSNLTTMVTPTSPYFLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLETDGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLLGKQVALGKKKKKSQEKKAERKAAKTLILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCNDAFRATYIRILT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query578 2.2.26 [Sep-21-2011]
P16395 805 Muscarinic acetylcholine yes N/A 0.513 0.368 0.529 1e-107
Q9N2A4590 Muscarinic acetylcholine yes N/A 0.738 0.723 0.400 2e-87
P20309590 Muscarinic acetylcholine yes N/A 0.738 0.723 0.400 4e-87
Q9N2A3590 Muscarinic acetylcholine N/A N/A 0.738 0.723 0.400 4e-87
Q9N2A2590 Muscarinic acetylcholine N/A N/A 0.738 0.723 0.400 5e-87
Q9ERZ3589 Muscarinic acetylcholine yes N/A 0.738 0.724 0.390 5e-87
P41984590 Muscarinic acetylcholine yes N/A 0.738 0.723 0.392 3e-86
P11483590 Muscarinic acetylcholine yes N/A 0.738 0.723 0.390 1e-85
P08483589 Muscarinic acetylcholine yes N/A 0.730 0.716 0.388 6e-85
P49578639 Muscarinic acetylcholine yes N/A 0.724 0.655 0.394 3e-84
>sp|P16395|ACM1_DROME Muscarinic acetylcholine receptor DM1 OS=Drosophila melanogaster GN=mAcR-60C PE=2 SV=2 Back     alignment and function desciption
 Score =  389 bits (999), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/391 (52%), Positives = 250/391 (63%), Gaps = 94/391 (24%)

Query: 89  FLDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNI 148
           F  K PR++   ++++   AA LS VTV GN                            +
Sbjct: 92  FETKGPRYSLASMVVMGFVAAILSTVTVAGN----------------------------V 123

Query: 149 LVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLAL 208
           +VM+SFKIDK LQTISNYFLFSLA+ADFAIGAISMPLF V TILGYWPLGP+VCDTWLAL
Sbjct: 124 MVMISFKIDKQLQTISNYFLFSLAIADFAIGAISMPLFAVTTILGYWPLGPIVCDTWLAL 183

Query: 209 DYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILWPPWIFAW 268
           DYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTT RAA MI  AWG+S++LWPPWI++W
Sbjct: 184 DYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTNRAAVMIGAAWGISLLLWPPWIYSW 243

Query: 269 PYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFS 328
           PYIEG+R VP  ECYIQFIETN YITF TA+AAFY PV++M FLY RI++ET+KR+K+  
Sbjct: 244 PYIEGKRTVPKDECYIQFIETNQYITFGTALAAFYFPVTIMCFLYWRIWRETKKRQKDLP 303

Query: 329 NLQA----AGKKDSSKRSTSRIN--------------------RKPRP------------ 352
           NLQA    + K+ +S    + +N                    R+PR             
Sbjct: 304 NLQAGKKDSSKRSNSSDENTVVNHASGGLLAFAQVGGNDHDTWRRPRSESSPDAESVYMT 363

Query: 353 -----------FSRKF-----------------IQEWCIAWWHSGREEDPDCDLD-DTPS 383
                       SRK                  I+EWCIAWWHSGRE+  D   + + PS
Sbjct: 364 NMVIDSGYHGMHSRKSSIKSTNTIKKSYTCFGSIKEWCIAWWHSGREDSDDFAYEQEEPS 423

Query: 384 DIGGYATPVSVETPVTSCVSRCTSLNVIKDS 414
           D+ GYATPV++ETP+ S VSRCTS+NV++D+
Sbjct: 424 DL-GYATPVTIETPLQSSVSRCTSMNVMRDN 453
The muscarinic acetylcholine receptor mediates various cellular responses, including inhibition of adenylate cyclase, breakdown of phosphoinositides and modulation of potassium channels through the action of G proteins. Primary transducing effect is Pi turnover. May have a role in the processing of olfactory and mechanosensory signals; regulation of neurosecretion.
Drosophila melanogaster (taxid: 7227)
>sp|Q9N2A4|ACM3_PANTR Muscarinic acetylcholine receptor M3 OS=Pan troglodytes GN=CHRM3 PE=3 SV=1 Back     alignment and function description
>sp|P20309|ACM3_HUMAN Muscarinic acetylcholine receptor M3 OS=Homo sapiens GN=CHRM3 PE=1 SV=1 Back     alignment and function description
>sp|Q9N2A3|ACM3_GORGO Muscarinic acetylcholine receptor M3 OS=Gorilla gorilla gorilla GN=CHRM3 PE=3 SV=1 Back     alignment and function description
>sp|Q9N2A2|ACM3_PONPY Muscarinic acetylcholine receptor M3 OS=Pongo pygmaeus GN=CHRM3 PE=2 SV=1 Back     alignment and function description
>sp|Q9ERZ3|ACM3_MOUSE Muscarinic acetylcholine receptor M3 OS=Mus musculus GN=Chrm3 PE=2 SV=1 Back     alignment and function description
>sp|P41984|ACM3_BOVIN Muscarinic acetylcholine receptor M3 OS=Bos taurus GN=CHRM3 PE=2 SV=1 Back     alignment and function description
>sp|P11483|ACM3_PIG Muscarinic acetylcholine receptor M3 OS=Sus scrofa GN=CHRM3 PE=3 SV=1 Back     alignment and function description
>sp|P08483|ACM3_RAT Muscarinic acetylcholine receptor M3 OS=Rattus norvegicus GN=Chrm3 PE=1 SV=1 Back     alignment and function description
>sp|P49578|ACM3_CHICK Muscarinic acetylcholine receptor M3 OS=Gallus gallus GN=CHRM3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query578
242020086575 Class A Rhodopsin-like G-Protein Coupled 0.740 0.744 0.550 1e-145
189234226598 PREDICTED: similar to putative muscarini 0.802 0.775 0.507 1e-145
307188496 1155 Muscarinic acetylcholine receptor DM1 [C 0.743 0.372 0.546 1e-137
328790631570 PREDICTED: muscarinic acetylcholine rece 0.745 0.756 0.539 1e-137
403183358 686 AAEL017181-PA, partial [Aedes aegypti] 0.764 0.644 0.497 1e-137
322789741601 hypothetical protein SINV_08952 [Solenop 0.762 0.733 0.539 1e-136
189908194599 muscarinic acetylcholine receptor [Polyr 0.743 0.717 0.541 1e-136
350421755578 PREDICTED: muscarinic acetylcholine rece 0.756 0.756 0.544 1e-136
340726848571 PREDICTED: muscarinic acetylcholine rece 0.754 0.763 0.541 1e-136
383851139598 PREDICTED: muscarinic acetylcholine rece 0.747 0.722 0.542 1e-133
>gi|242020086|ref|XP_002430487.1| Class A Rhodopsin-like G-Protein Coupled Receptor, GPRmac1 [Pediculus humanus corporis] gi|212515644|gb|EEB17749.1| Class A Rhodopsin-like G-Protein Coupled Receptor, GPRmac1 [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 303/550 (55%), Positives = 353/550 (64%), Gaps = 122/550 (22%)

Query: 141 IVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPM 200
           I TVLGN +VM+SFKIDK LQTISNYFLFSLAVADFAIG ISMPLFTV TILGYWPLG  
Sbjct: 35  IATVLGNCMVMISFKIDKQLQTISNYFLFSLAVADFAIGLISMPLFTVSTILGYWPLGRH 94

Query: 201 VCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMIL 260
           +CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTT +AA MI  AWG+S++L
Sbjct: 95  ICDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTSKAAIMIACAWGISLLL 154

Query: 261 WPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKET 320
           WPPWI+AWPYIEG+R VP  ECYIQFIETNHYITF TAIAAFY+PV+VM  LY RI++ET
Sbjct: 155 WPPWIYAWPYIEGKRTVPEKECYIQFIETNHYITFGTAIAAFYVPVTVMCTLYWRIWRET 214

Query: 321 EKRKKEFSNLQAAGKKDSSKRS-----------------------------TSRIN---- 347
           +KR+K+  NLQ AGKKDSSKRS                             TS +N    
Sbjct: 215 KKRQKDLPNLQ-AGKKDSSKRSNSSDEAVDLEDWKRTRSESGVVASELGDGTSGLNATNL 273

Query: 348 --------RKPRPFSRKFIQEWCIAWWHSGREEDPDCDLDDTPSDIGGYATPVSVETPVT 399
                   R  RPF+  +I++WCI+WWH+GRE+D + + +DTPSD+ GYATPVSVETP+ 
Sbjct: 274 ENQNAAQKRAARPFTWAWIRDWCISWWHAGREDDVE-EYEDTPSDM-GYATPVSVETPLQ 331

Query: 400 SCVSRCTSLNVIKDSTKQ-----QTPPTRIHH--------------------------VY 428
           S VSRCTSLNVI++         Q    R HH                          VY
Sbjct: 332 SSVSRCTSLNVIREPYAHSFGNFQPATPRSHHVVHHNFDSRSLPTANRLTSRSLSNDSVY 391

Query: 429 TILIRLPLET-----DGSGDQPSIKMIPDENLPRLGKHPD----FPAQNAAALNRRPSHI 479
           TILIRLP ++     +G  D PSIKMI +EN   +  + D    FP   A+   RR S +
Sbjct: 392 TILIRLPSDSAGCNGNGPADGPSIKMIENENPLPIKSNADCTVGFPTSPASGHGRRLSQM 451

Query: 480 SDIRIPLNAKMMNKNAKLLGKQVALGKKK-----------------KKSQEKKAERKAAK 522
            D++I  N   +NKN   +GK       K                 KK+QEKK ++KAAK
Sbjct: 452 PDVKISTN---LNKN---IGKSGGASNSKLHVVNTAPIVKHHQKKKKKTQEKKQDKKAAK 505

Query: 523 TL---------------ILVLLKPITTCSECIPNGLWDFFYYLCYINSTINPVCYALCND 567
           TL               +LVLLKP+TT   CIP  LWDFFYYLCYINSTINPVCYALCN 
Sbjct: 506 TLTAILLSFIITWTPYNVLVLLKPVTTGYACIPQQLWDFFYYLCYINSTINPVCYALCNA 565

Query: 568 AFRATYIRIL 577
           +FR TY+RIL
Sbjct: 566 SFRRTYVRIL 575

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189234226|ref|XP_972657.2| PREDICTED: similar to putative muscarinic acetylcholine receptor 1 (AGAP010513-PA) [Tribolium castaneum] gi|270002879|gb|EEZ99326.1| hypothetical protein TcasGA2_TC004470 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307188496|gb|EFN73233.1| Muscarinic acetylcholine receptor DM1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328790631|ref|XP_395760.4| PREDICTED: muscarinic acetylcholine receptor DM1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|403183358|gb|EJY58035.1| AAEL017181-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|322789741|gb|EFZ14907.1| hypothetical protein SINV_08952 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|189908194|gb|ACE60222.1| muscarinic acetylcholine receptor [Polyrhachis vicina] Back     alignment and taxonomy information
>gi|350421755|ref|XP_003492947.1| PREDICTED: muscarinic acetylcholine receptor DM1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340726848|ref|XP_003401764.1| PREDICTED: muscarinic acetylcholine receptor DM1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383851139|ref|XP_003701097.1| PREDICTED: muscarinic acetylcholine receptor DM1-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query578
FB|FBgn0000037 805 mAcR-60C "muscarinic Acetylcho 0.349 0.250 0.807 3.7e-139
WB|WBGene00001519611 gar-3 [Caenorhabditis elegans 0.384 0.363 0.582 2.2e-82
UNIPROTKB|P49578639 CHRM3 "Muscarinic acetylcholin 0.356 0.322 0.608 1.1e-80
UNIPROTKB|F1NMN4639 CHRM3 "Muscarinic acetylcholin 0.356 0.322 0.608 1.7e-80
UNIPROTKB|P20309590 CHRM3 "Muscarinic acetylcholin 0.344 0.337 0.625 2.2e-80
ZFIN|ZDB-GENE-090410-4595 chrm3a "cholinergic receptor, 0.333 0.324 0.623 2.8e-80
MGI|MGI:88398589 Chrm3 "cholinergic receptor, m 0.344 0.337 0.615 4.6e-80
RGD|2343589 Chrm3 "cholinergic receptor, m 0.344 0.337 0.615 4.6e-80
RGD|620027531 Chrm5 "cholinergic receptor, m 0.486 0.529 0.479 9.5e-80
UNIPROTKB|F1PGZ2590 CHRM3 "Uncharacterized protein 0.344 0.337 0.62 9.5e-80
FB|FBgn0000037 mAcR-60C "muscarinic Acetylcholine Receptor 60C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 872 (312.0 bits), Expect = 3.7e-139, Sum P(5) = 3.7e-139
 Identities = 164/203 (80%), Positives = 183/203 (90%)

Query:   142 VTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMV 201
             VTV GN++VM+SFKIDK LQTISNYFLFSLA+ADFAIGAISMPLF V TILGYWPLGP+V
Sbjct:   117 VTVAGNVMVMISFKIDKQLQTISNYFLFSLAIADFAIGAISMPLFAVTTILGYWPLGPIV 176

Query:   202 CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILW 261
             CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTT RAA MI  AWG+S++LW
Sbjct:   177 CDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTNRAAVMIGAAWGISLLLW 236

Query:   262 PPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETE 321
             PPWI++WPYIEG+R VP  ECYIQFIETN YITF TA+AAFY PV++M FLY RI++ET+
Sbjct:   237 PPWIYSWPYIEGKRTVPKDECYIQFIETNQYITFGTALAAFYFPVTIMCFLYWRIWRETK 296

Query:   322 KRKKEFSNLQAAGKKDSSKRSTS 344
             KR+K+  NLQA GKKDSSKRS S
Sbjct:   297 KRQKDLPNLQA-GKKDSSKRSNS 318
GO:0005886 "plasma membrane" evidence=NAS
GO:0016907 "G-protein coupled acetylcholine receptor activity" evidence=ISS;IDA
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS
GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA
WB|WBGene00001519 gar-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P49578 CHRM3 "Muscarinic acetylcholine receptor M3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NMN4 CHRM3 "Muscarinic acetylcholine receptor M3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P20309 CHRM3 "Muscarinic acetylcholine receptor M3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090410-4 chrm3a "cholinergic receptor, muscarinic 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:88398 Chrm3 "cholinergic receptor, muscarinic 3, cardiac" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2343 Chrm3 "cholinergic receptor, muscarinic 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|620027 Chrm5 "cholinergic receptor, muscarinic 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGZ2 CHRM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P16395ACM1_DROMENo assigned EC number0.52940.51380.3689yesN/A
P41984ACM3_BOVINNo assigned EC number0.39240.73870.7237yesN/A
Q9U7D5ACM3_CAEELNo assigned EC number0.52090.43070.4075yesN/A
P49578ACM3_CHICKNo assigned EC number0.39470.72490.6557yesN/A
P11483ACM3_PIGNo assigned EC number0.39040.73870.7237yesN/A
P08483ACM3_RATNo assigned EC number0.38850.73010.7164yesN/A
Q9ERZ3ACM3_MOUSENo assigned EC number0.39040.73870.7249yesN/A
Q9N2A4ACM3_PANTRNo assigned EC number0.40030.73870.7237yesN/A
P20309ACM3_HUMANNo assigned EC number0.40030.73870.7237yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query578
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-40
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 3e-13
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 7e-13
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 2e-06
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 0.002
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 0.002
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score =  146 bits (371), Expect = 3e-40
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 5/193 (2%)

Query: 157 DKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNAS 216
            K L+T +N FL +LAVAD        P    Y + G WP G  +C     L  +   AS
Sbjct: 6   TKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVVNGYAS 65

Query: 217 VLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSMILW-PPWIFAWPYIEGER 275
           +L L  IS DRY ++  PL YR  RT +RA  +I+  W ++++L  PP +F+W     E 
Sbjct: 66  ILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEG 125

Query: 276 RVPYYECYIQFIETNH--YITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSNLQAA 333
            V    C I F E +     T L+ +  F +P+ V++  Y  I +   KR +  ++   A
Sbjct: 126 NV--TTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARA 183

Query: 334 GKKDSSKRSTSRI 346
            +  S +R  +++
Sbjct: 184 KRSSSKERKAAKM 196

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 578
KOG4220|consensus503 100.0
KOG4219|consensus423 100.0
PHA03234338 DNA packaging protein UL33; Provisional 100.0
PHA02834323 chemokine receptor-like protein; Provisional 100.0
PHA03235409 DNA packaging protein UL33; Provisional 100.0
PHA02638417 CC chemokine receptor-like protein; Provisional 100.0
PHA03087335 G protein-coupled chemokine receptor-like protein; 100.0
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.97
KOG2087|consensus363 99.92
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.81
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.73
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.7
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.44
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 99.39
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 99.22
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 99.18
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.97
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 98.61
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.4
KOG4193|consensus610 98.22
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.22
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 98.03
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 97.96
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.94
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 97.82
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.74
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 97.74
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.53
KOG4564|consensus473 97.23
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 96.79
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 96.56
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 96.32
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 95.97
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 95.86
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 95.7
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 94.27
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 93.78
PF02076283 STE3: Pheromone A receptor; InterPro: IPR001499 G- 92.24
PF01534328 Frizzled: Frizzled/Smoothened family membrane regi 92.06
>KOG4220|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.2e-53  Score=403.94  Aligned_cols=216  Identities=65%  Similarity=1.082  Sum_probs=200.7

Q ss_pred             CCCCCCCcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHH
Q psy16378         90 LDKEPRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLF  169 (578)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~  169 (578)
                      .+.......++.++++++.+.++++.++||++|++                            .+.-+|+|++..|+|++
T Consensus        19 ~~~~~~~~~~q~v~i~~v~~~lsLVTv~GNlLVmi----------------------------SfKvnrqLqTVnNYfLf   70 (503)
T KOG4220|consen   19 ESPGTRYETWQVVFIVVVTGSLSLVTVVGNLLVMI----------------------------SFKVNRQLQTVNNYFLF   70 (503)
T ss_pred             ccCCCCccceEEEeeehhhhHHHHHhhhccEEEEE----------------------------EEEecceeeeecceeeh
Confidence            33445566788889999999999999999999999                            99999999999999999


Q ss_pred             HHHHHHHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHH
Q psy16378        170 SLAVADFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACM  249 (578)
Q Consensus       170 ~LAvaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~  249 (578)
                      +||+|||+.|.+.+|++..+.+.++|.+|...|.+...+.++...+|++.|..|++|||+.|.+|+.|+...|.+|+..+
T Consensus        71 SLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~M  150 (503)
T KOG4220|consen   71 SLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLM  150 (503)
T ss_pred             HHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHHhhhhhhhhhheeeeecceeecccccccccccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhHHhhcccccccccccceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy16378        250 IVTAWGVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRKKEFSN  329 (578)
Q Consensus       250 i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~~~~~~  329 (578)
                      |+++|++|+++..|.++.|.+..+......+.|..++.+ ..+..+...+..|-+|..+|+++|.+|++..+++.+....
T Consensus       151 I~~AW~iSfiLWaPaIl~WqyivGkrTv~~~eC~iQFls-np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~  229 (503)
T KOG4220|consen  151 IGAAWVLSFVLWAPAILFWQYIVGKRTVPDGECYIQFLS-NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAK  229 (503)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhheeeeecCCCceEEEeec-CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999988888888899998876 5566677778889999999999999999999999998887


Q ss_pred             hhhcC
Q psy16378        330 LQAAG  334 (578)
Q Consensus       330 ~~~~~  334 (578)
                      .+...
T Consensus       230 lq~s~  234 (503)
T KOG4220|consen  230 LQASL  234 (503)
T ss_pred             ccccc
Confidence            77664

>KOG4219|consensus Back     alignment and domain information
>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query578
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 8e-64
4daj_A479 Structure Of The M3 Muscarinic Acetylcholine Recept 2e-11
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 1e-61
3uon_A467 Structure Of The Human M2 Muscarinic Acetylcholine 4e-11
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 3e-28
3rze_A452 Structure Of The Human Histamine H1 Receptor In Com 4e-05
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-27
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 1e-25
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 6e-24
3p0g_A501 Structure Of A Nanobody-Stabilized Active State Of 6e-24
2rh1_A500 High Resolution Crystal Structure Of Human B2-Adren 7e-24
3d4s_A490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 7e-24
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 7e-24
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 8e-24
3pds_A458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 3e-23
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 5e-23
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-22
3pbl_A481 Structure Of The Human Dopamine D3 Receptor In Comp 5e-19
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 4e-15
3pwh_A329 Thermostabilised Adenosine A2a Receptor Length = 32 7e-15
3vg9_A326 Crystal Structure Of Human Adenosine A2a Receptor W 1e-14
4eiy_A447 Crystal Structure Of The Chimeric Protein Of A2aar- 6e-14
3eml_A488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 7e-14
2ydo_A325 Thermostabilised Human A2a Receptor With Adenosine 6e-13
4djh_A480 Structure Of The Human Kappa Opioid Receptor In Com 4e-12
4dkl_A464 Crystal Structure Of The Mu-Opioid Receptor Bound T 4e-12
4ej4_A461 Structure Of The Delta Opioid Receptor Bound To Nal 9e-12
2z73_A448 Crystal Structure Of Squid Rhodopsin Length = 448 1e-11
2ziy_A372 Crystal Structure Of Squid Rhodopsin Length = 372 1e-11
2x72_A349 Crystal Structure Of The Constitutively Active E113 4e-08
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 5e-08
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 5e-08
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 6e-08
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 6e-08
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 6e-08
2ks9_A364 Solution Conformation Of Substance P In Water Compl 9e-06
3odu_A502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 2e-04
3oe0_A499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 3e-04
3oe6_A508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 3e-04
3vw7_A484 Crystal Structure Of Human Protease-Activated Recep 6e-04
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure 
Iteration: 1

 Score =  241 bits (615), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/188 (61%), Positives = 146/188 (77%), Gaps = 1/188 (0%)
Query: 135 ISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGY 194
           ++ +  +VT++GNILV+V+FK++K L+T++NYFL SLA AD  IG ISM LFT Y I+  
Sbjct: 18  LTGFLALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNR 77
Query: 195 WPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW 254
           W LG + CD WL++DY+ASNASV+NLL+ISFDRYFS+TRPLTYRAKRTTKRA  MI  AW
Sbjct: 78  WALGNLACDLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAW 137
Query: 255 GVSMILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYL 314
            +S +LW P I  W Y  G+R VP  EC+IQF+ +   ITF TAIAAFY+PV++M  LY 
Sbjct: 138 VISFVLWAPAILFWQYFVGKRTVPPGECFIQFL-SEPTITFGTAIAAFYMPVTIMTILYW 196
Query: 315 RIYKETEK 322
           RIYKETEK
Sbjct: 197 RIYKETEK 204
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448 Back     alignment and structure
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1 (Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom Length = 484 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query578
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-108
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 1e-104
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 8e-96
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 3e-89
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 2e-84
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 3e-71
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-11
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 4e-63
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-60
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 2e-08
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 5e-60
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-06
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-42
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 1e-34
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 5e-05
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 1e-30
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 2e-30
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-30
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 4e-30
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 4e-09
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
 Score =  332 bits (851), Expect = e-108
 Identities = 160/455 (35%), Positives = 225/455 (49%), Gaps = 45/455 (9%)

Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
             +VT++GNILVMVS K+++ LQT++NYFLFSLA AD  IG  SM L+T+YT++GYWPLG
Sbjct: 33  LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLG 92

Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
           P+VCD WLALDY+ SNASV+NLLIISFDRYF VT+PLTY  KRTTK A  MI  AW +S 
Sbjct: 93  PVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSF 152

Query: 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFYIPVSVMIFLYLRIYK 318
           ILW P I  W +I G R V   ECYIQF  +N  +TF TAIAAFY+PV +M  LY  I +
Sbjct: 153 ILWAPAILFWQFIVGVRTVEDGECYIQFF-SNAAVTFGTAIAAFYLPVIIMTVLYWHISR 211

Query: 319 ETEKRKKEFSNLQAAGKKDSSKRSTSRINRKPRPFSRKFIQEWCIAWWHSGREEDPDCDL 378
            ++ R   F  L+            +                                  
Sbjct: 212 ASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIG--------------------------- 244

Query: 379 DDTPSDIGGYATPVSVETPVTSCVSRCTSLNVIKDSTKQQTPPTRIHHVYTILIRLPLET 438
                 +    +  + ++ +   + R T+  + KD  ++         V  IL    L+ 
Sbjct: 245 --IGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKP 302

Query: 439 DGSGDQPSIKMIPDENLPRLGKHPDFPAQNAAALNRRPSHISDIRIPLNAKMMNKNAKLL 498
                    +      + ++G+       N+  + ++            ++  N+     
Sbjct: 303 VYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRA 362

Query: 499 GKQVALGK--KKKKSQEKKAERKAAKTLILVLLKPITT-------------CSECIPNGL 543
            + +   +            E+K  +T++ +LL  I T             C+ CIPN +
Sbjct: 363 KRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTV 422

Query: 544 WDFFYYLCYINSTINPVCYALCNDAFRATYIRILT 578
           W   Y+LCYINSTINP CYALCN  F+ T+  +L 
Sbjct: 423 WTIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Length = 32 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query578
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 100.0
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 100.0
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 100.0
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 100.0
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 100.0
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 100.0
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 100.0
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 100.0
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 100.0
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 100.0
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 100.0
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 100.0
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 100.0
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 100.0
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 100.0
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 100.0
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 100.0
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 98.86
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.36
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 95.02
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 90.32
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 89.62
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 82.8
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1e-47  Score=413.11  Aligned_cols=211  Identities=20%  Similarity=0.294  Sum_probs=176.4

Q ss_pred             CCCcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCc---cchhHHHHHH
Q psy16378         94 PRFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTL---QTISNYFLFS  170 (578)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~l---r~~~~~~i~~  170 (578)
                      ...+....+++.++|++++++|++||++|++                            ++.++|++   ++++|+||+|
T Consensus        25 ~~~~~~~~v~~~~~~~~i~~~g~~gN~lvi~----------------------------~i~~~~~~r~~~~~~n~~i~~   76 (510)
T 4grv_A           25 VNTDIYSKVLVTAIYLALFVVGTVGNSVTLF----------------------------TLARKKSLQSLQSTVHYHLGS   76 (510)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTSCC----CCHHHHHHHHHH
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------------heeeecCCCCCCChHHHHHHH
Confidence            3445677888889999999999999988888                            88776654   5889999999


Q ss_pred             HHHHHHHhhhhchhHHHHHHHc--CccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhH
Q psy16378        171 LAVADFAIGAISMPLFTVYTIL--GYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAAC  248 (578)
Q Consensus       171 LAvaDll~~~~~~p~~~~~~~~--~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~  248 (578)
                      ||+||++++++.+|+.++..+.  +.|.+|+.+|++..++..++..+|++++++||+|||+||++|++|+..++++++..
T Consensus        77 La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~  156 (510)
T 4grv_A           77 LALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKK  156 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccce
Confidence            9999999999999999887654  46999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhHHhhccccccc---ccccceeeeeccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378        249 MIVTAWGVSMILWPPWIFAWPYIEGE---RRVPYYECYIQFIET-NHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKRK  324 (578)
Q Consensus       249 ~i~~~W~~s~~~~~p~~~~~~~~~~~---~~~~~~~C~~~~~~~-~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~~  324 (578)
                      +++++|++++++++|+++.++.....   .......|...++.. ...|.++.+++.|++|+++|+++|.+|++.++++.
T Consensus       157 ~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~  236 (510)
T 4grv_A          157 FISAIWLASALLAIPMLFTMGLQNRSADGTHPGGLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMV  236 (510)
T ss_dssp             HHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGGGEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             eehHHHHHHHHHHHHHHHhhcccccccCCCCCCccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999987654332   223345677666443 33566667778899999999999999999999887


Q ss_pred             hhhhhhhh
Q psy16378        325 KEFSNLQA  332 (578)
Q Consensus       325 ~~~~~~~~  332 (578)
                      +.....+.
T Consensus       237 ~~~~~~~~  244 (510)
T 4grv_A          237 NIFEMLRI  244 (510)
T ss_dssp             THHHHHHH
T ss_pred             hhhhhhcc
Confidence            76554443
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 578
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 2e-16
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 8e-04
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.9 bits (193), Expect = 2e-16
 Identities = 37/181 (20%), Positives = 71/181 (39%), Gaps = 2/181 (1%)

Query: 139 FLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVADFAIGAISMPLFTVYTILGYWPLG 198
            +++    N L +      K L+T  NY L +LAVAD  +           ++ GY+  G
Sbjct: 47  LIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG 106

Query: 199 PMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAWGVSM 258
           P  C+       L    ++ +L++++ +RY  V +P++            +  T      
Sbjct: 107 PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALA 166

Query: 259 ILWPPWIFAWPYIEGERRVPYYECYIQFIETNHYITFLTAIAAFY--IPVSVMIFLYLRI 316
              PP +    YI    +      Y    E  +  +F+  +   +  IP+ V+ F Y ++
Sbjct: 167 CAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

Query: 317 Y 317
            
Sbjct: 227 V 227
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query578
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 100.0
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-36  Score=302.72  Aligned_cols=198  Identities=21%  Similarity=0.328  Sum_probs=161.7

Q ss_pred             CCcchHHHHHHHHHHHHHHhhhcCceEEEEEeeccchhHHHHHHHHHHHHHhhhheeeeEEecCCccchhHHHHHHHHHH
Q psy16378         95 RFTTTQVIIIATFAAFLSIVTVLGNILVMVSFKIDKTLQTISNYFLIVTVLGNILVMVSFKIDKTLQTISNYFLFSLAVA  174 (578)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~gN~~vi~~~~~~~~l~~i~~~i~~~gi~gN~lvi~~i~~~~~lr~~~~~~i~~LAva  174 (578)
                      ..+.+...++++++.+++++|++||+++++                            ++.++|++|++.|++++|||++
T Consensus        31 ~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~----------------------------vi~~~k~lr~~~~~~l~nLaia   82 (348)
T d1u19a_          31 LAEPWQFSMLAAYMFLLIMLGFPINFLTLY----------------------------VTVQHKKLRTPLNYILLNLAVA   82 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHSTTCCSHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHeeh----------------------------hhhccCCCCCHhHHHHHHHHHH
Confidence            344566778888888889999999888888                            8889999999999999999999


Q ss_pred             HHHhhhhchhHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCccccchhhhHHHHHHH
Q psy16378        175 DFAIGAISMPLFTVYTILGYWPLGPMVCDTWLALDYLASNASVLNLLIISFDRYFSVTRPLTYRAKRTTKRAACMIVTAW  254 (578)
Q Consensus       175 Dll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~iaidRy~aI~~P~~~~~~~t~~~~~~~i~~~W  254 (578)
                      |++.++...|..+.....+.|..+...|++..++...+..+|+++++++++|||++|++|++|+. .++++....++++|
T Consensus        83 Dll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~-~~~~~~~~~~~~~~  161 (348)
T d1u19a_          83 DLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFR-FGENHAIMGVAFTW  161 (348)
T ss_dssp             HHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhcccceeeeccccccc-cccccccccceeee
Confidence            99999999999999888898999999999999999999999999999999999999999999775 46777778888899


Q ss_pred             HHHHHhhhhHHhhcccccccccccceeeeeccc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16378        255 GVSMILWPPWIFAWPYIEGERRVPYYECYIQFI-----ETNHYITFLTAIAAFYIPVSVMIFLYLRIYKETEKR  323 (578)
Q Consensus       255 ~~s~~~~~p~~~~~~~~~~~~~~~~~~C~~~~~-----~~~~~~~~~~~~~~~~lPl~ii~~~y~~I~~~l~~~  323 (578)
                      .+++++..|+.+...........  ..|.....     .....+.++...+.+++|+++++++|.+|.+++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~  233 (348)
T d1u19a_         162 VMALACAAPPLVGWSRYIPEGMQ--CSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA  233 (348)
T ss_dssp             HHHHHHHSGGGTTSSCCEEETTT--TEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSC
T ss_pred             hhhhheecccccccceeccCCcc--cccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999988888775544332222  23332221     123345666667778999999999999988766543