Psyllid ID: psy16393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MLILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGEHEKRYQKARVDS
Secondary Structure (PSIPRED)
cEEEcccccccccccccccHHcccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEccccccccccccccccccccccccccccccHHHEHHHHHHHHccccccEEccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHcccccccccEEEEEEcc
Coil and Loop (DISEMBL)
mlilknsdeitKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMwiispvfkgehekRYQKARVDS
Flexible Loop (DISEMBL)
mlilknsdeitKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISpvfkgehekryqkarvds
Low Complexity Region (SEG)
MLILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGEHEKRYQKARVDS
Disordered region (IsUnstruct)
*********ITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFK**************
Disordered Region (DISOPRED)
ML*********************************FSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGEHEKRYQKARVDS
Disordered Region (DISEMBL)
MLILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGE************
Disordered Region (DISPRO)
******************************FWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGEHEKRYQKARVDS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKGEHEKRYQKARVDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
O18875	635	Sodium- and chloride-depe	yes	N/A	0.669	0.127	0.390	1e-11
P48029	635	Sodium- and chloride-depe	yes	N/A	0.669	0.127	0.365	3e-11
P28570	635	Sodium- and chloride-depe	yes	N/A	0.669	0.127	0.365	3e-11
P31661	635	Sodium- and chloride-depe	yes	N/A	0.669	0.127	0.365	4e-11
Q8VBW1	640	Sodium- and chloride-depe	yes	N/A	0.669	0.126	0.365	4e-11
P28572	638	Sodium- and chloride-depe	no	N/A	0.859	0.163	0.355	9e-11
P48067	706	Sodium- and chloride-depe	no	N/A	0.768	0.131	0.375	9e-11
Q28039	638	Sodium- and chloride-depe	no	N/A	0.859	0.163	0.355	1e-10
P28571	692	Sodium- and chloride-depe	no	N/A	0.768	0.134	0.375	1e-10
A7Y2W8	633	Sodium- and chloride-depe	N/A	N/A	0.801	0.153	0.34	6e-10

>sp|O18875|SC6A8_BOVIN Sodium- and chloride-dependent creatine transporter 1 OS=Bos taurus GN=SLC6A8 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
           P   W  +   +++C G  +GL N+ RF  L  + G   F+I +I+++LI GIP+F   +
Sbjct: 51  PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYILIALIGGIPIFFLEI 110

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
           SLGQ +  G I +W I P+FKG
Sbjct: 111 SLGQFMKAGSINVWNICPLFKG 132

Required for the uptake of creatine. Plays an important role in supplying creatine to the brain via the blood-brain barrier.
Bos taurus (taxid: 9913)

>sp|P48029|SC6A8_HUMAN Sodium- and chloride-dependent creatine transporter 1 OS=Homo sapiens GN=SLC6A8 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
           P   W  +   +++C G  +GL N+ RF  L  + G   F+I +++++L+ GIP+F   +
Sbjct: 51  PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEI 110

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
           SLGQ +  G I +W I P+FKG
Sbjct: 111 SLGQFMKAGSINVWNICPLFKG 132

Required for the uptake of creatine in muscles and brain.

Homo sapiens (taxid: 9606)

>sp|P28570|SC6A8_RAT Sodium- and chloride-dependent creatine transporter 1 OS=Rattus norvegicus GN=Slc6a8 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
           P   W  +   +++C G  +GL N+ RF  L  + G   F+I +++++L+ GIP+F   +
Sbjct: 51  PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEI 110

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
           SLGQ +  G I +W I P+FKG
Sbjct: 111 SLGQFMKAGSINVWNICPLFKG 132

Required for the uptake of creatine. Plays an important role in supplying creatine to the brain via the blood-brain barrier.

Rattus norvegicus (taxid: 10116)

>sp|P31661|SC6A8_RABIT Sodium- and chloride-dependent creatine transporter 1 OS=Oryctolagus cuniculus GN=SLC6A8 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
           P   W  +   +++C G  +GL N+ RF  L  + G   F+I +++++L+ GIP+F   +
Sbjct: 51  PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEI 110

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
           SLGQ +  G I +W I P+FKG
Sbjct: 111 SLGQFMKAGSINVWNICPLFKG 132

Required for the uptake of creatine. Plays an important role in supplying creatine to the brain via the blood-brain barrier.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q8VBW1|SC6A8_MOUSE Sodium- and chloride-dependent creatine transporter 1 OS=Mus musculus GN=Slc6a8 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
           P   W  +   +++C G  +GL N+ RF  L  + G   F+I +++++L+ GIP+F   +
Sbjct: 51  PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEI 110

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
           SLGQ +  G I +W I P+FKG
Sbjct: 111 SLGQFMKAGSINVWNICPLFKG 132

Required for the uptake of creatine. Plays an important role in supplying creatine to the brain via the blood-brain barrier.

Mus musculus (taxid: 10090)

>sp|P28572|SC6A9_RAT Sodium- and chloride-dependent glycine transporter 1 OS=Rattus norvegicus GN=Slc6a9 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 3   ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
           +  +S E    V  E     QNL    G W N+   +L   G  +GL N+ RF  L  + 
Sbjct: 8   VATSSPEQNGAVPSEATKKDQNLTR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query: 63  GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct: 66  GGGAFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Rattus norvegicus (taxid: 10116)

>sp|P48067|SC6A9_HUMAN Sodium- and chloride-dependent glycine transporter 1 OS=Homo sapiens GN=SLC6A9 PE=2 SV=3

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 14  VDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFII 72
           V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + G   F+  + I
Sbjct: 87  VPSEATKRDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFI 144

Query: 73  LSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           + +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct: 145 MLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 180

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Homo sapiens (taxid: 9606)

>sp|Q28039|SC6A9_BOVIN Sodium- and chloride-dependent glycine transporter 1 OS=Bos taurus GN=SLC6A9 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 3/107 (2%)

Query: 3   ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
           +  +S E    V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + 
Sbjct: 8   VAPSSLEQNGAVPSEATKKDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query: 63  GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct: 66  GGGAFMFPYFIMLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Bos taurus (taxid: 9913)

>sp|P28571|SC6A9_MOUSE Sodium- and chloride-dependent glycine transporter 1 OS=Mus musculus GN=Slc6a9 PE=2 SV=3

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 14  VDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFII 72
           V  E     QNL    G W N+   +L   G  +GL N+ RF  L  + G   F+  + I
Sbjct: 73  VPSEATKKDQNLTR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFI 130

Query: 73  LSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           + +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct: 131 MLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 166

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Mus musculus (taxid: 10090)

>sp|A7Y2W8|SC6A9_XENLA Sodium- and chloride-dependent glycine transporter 1 OS=Xenopus laevis GN=slc6a9 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 10  ITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FII 68
           +   V  E     +NL+   G W N+   +L   G  +GL N+ RF  L  + G   F+ 
Sbjct: 5   VNGAVPSEATKKDENLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMF 62

Query: 69  QFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
            + I+ +  GIPLF   +S GQ  ++GC+ +W +SP+FKG
Sbjct: 63  PYFIMLIFCGIPLFFMELSFGQFASQGCLGVWRVSPIFKG 102

Terminates the action of glycine by its high affinity sodium-dependent reuptake into presynaptic terminals. May play a role in regulation of glycine levels in NMDA receptor-mediated neurotransmission.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
328705132	834	PREDICTED: sodium- and chloride-dependen	0.818	0.118	0.6	2e-29
328705138	808	PREDICTED: sodium- and chloride-dependen	0.719	0.107	0.655	2e-26
357613544	1136	hypothetical protein KGM_01598 [Danaus p	0.743	0.079	0.611	2e-26
345481147	1393	PREDICTED: hypothetical protein LOC10012	0.677	0.058	0.634	2e-25
307184065	1439	Sodium- and chloride-dependent glycine t	0.669	0.056	0.679	2e-25
270001524	1363	hypothetical protein TcasGA2_TC000366 [T	0.685	0.060	0.626	3e-25
340708904	1505	PREDICTED: hypothetical protein LOC10064	0.677	0.054	0.634	5e-25
328791730	1404	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.677	0.058	0.646	2e-24
350419066	1506	PREDICTED: hypothetical protein LOC10074	0.677	0.054	0.621	2e-24
307212071	485	Sodium- and chloride-dependent GABA tran	0.661	0.164	0.662	2e-23

>gi|328705132|ref|XP_001942833.2| PREDICTED: sodium- and chloride-dependent glycine transporter 1-like isoform 1 [Acyrthosiphon pisum] gi|328705134|ref|XP_003242708.1| PREDICTED: sodium- and chloride-dependent glycine transporter 1-like isoform 2 [Acyrthosiphon pisum] gi|328705136|ref|XP_003242709.1| PREDICTED: sodium- and chloride-dependent glycine transporter 1-like isoform 3 [Acyrthosiphon pisum]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 79/100 (79%), Gaps = 1/100 (1%)

Query: 9   EITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFII 68
           ++ +C D  Y++ Q++ + PLG W N++SS+LA  G T+G FNISRFAIL+VQFG NFI+
Sbjct: 16  DVRECADEAYEMSQES-QSPLGQWSNKYSSVLATLGCTLGAFNISRFAILAVQFGANFIL 74

Query: 69  QFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           QF++LSL+VGIPLF FH SLGQLL  G + MW ISP+FKG
Sbjct: 75  QFLVLSLLVGIPLFTFHSSLGQLLGAGVMDMWRISPIFKG 114

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705138|ref|XP_003242710.1| PREDICTED: sodium- and chloride-dependent glycine transporter 1-like isoform 4 [Acyrthosiphon pisum]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 69/87 (79%)

Query: 22  QQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPL 81
            Q  + PLG W N++SS+LA  G T+G FNISRFAIL+VQFG NFI+QF++LSL+VGIPL
Sbjct: 2   SQESQSPLGQWSNKYSSVLATLGCTLGAFNISRFAILAVQFGANFILQFLVLSLLVGIPL 61

Query: 82  FAFHVSLGQLLAKGCIQMWIISPVFKG 108
           F FH SLGQLL  G + MW ISP+FKG
Sbjct: 62  FTFHSSLGQLLGAGVMDMWRISPIFKG 88

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613544|gb|EHJ68574.1| hypothetical protein KGM_01598 [Danaus plexippus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/90 (61%), Positives = 66/90 (73%)

Query: 19  DLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVG 78
           D H+     P G W +  S+MLACF  TIG+FNISRFAI SV FG +FI+QFIILSLIVG
Sbjct: 333 DRHEDADMPPFGVWPHRMSAMLACFSCTIGIFNISRFAIFSVNFGASFIVQFIILSLIVG 392

Query: 79  IPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
           IPLF  H+ LGQ+L  G + MW ISP+F+G
Sbjct: 393 IPLFTLHLCLGQVLESGPVDMWKISPIFQG 422

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481147|ref|XP_001607002.2| PREDICTED: hypothetical protein LOC100123368 [Nasonia vitripennis]

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/82 (63%), Positives = 63/82 (76%)

Query: 27  HPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHV 86
           +PLG W +  S  LAC G T+GLFNISRFAILS+QFG NFI+QF+ILSL++GIPL    V
Sbjct: 48  NPLGRWPHALSPALACLGCTLGLFNISRFAILSIQFGANFIVQFLILSLVIGIPLLTLQV 107

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
            LGQ LA G + MW ISP+F+G
Sbjct: 108 CLGQRLAAGAVDMWKISPLFQG 129

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184065|gb|EFN70600.1| Sodium- and chloride-dependent glycine transporter 2 [Camponotus floridanus]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 64/81 (79%)

Query: 28  PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVS 87
           PLG W + FSS+LAC G T+GLFNISRFAILSVQFG NFI+QF+ILS I+GIPL    V 
Sbjct: 47  PLGKWPHAFSSVLACLGCTLGLFNISRFAILSVQFGANFIVQFLILSFILGIPLLTLQVC 106

Query: 88  LGQLLAKGCIQMWIISPVFKG 108
           LGQ LA G + MW ISP+F+G
Sbjct: 107 LGQRLAAGSVDMWRISPLFQG 127

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001524|gb|EEZ97971.1| hypothetical protein TcasGA2_TC000366 [Tribolium castaneum]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 62/83 (74%)

Query: 26  EHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFH 85
           E PLG W +  SSM+AC G T+GLFNISRFAIL+V FG NFI QF+ILSL+ G+PLF   
Sbjct: 541 ESPLGQWPHSLSSMMACLGCTLGLFNISRFAILTVHFGANFIFQFVILSLVFGLPLFTLQ 600

Query: 86  VSLGQLLAKGCIQMWIISPVFKG 108
           + LGQ L  G I MW ISP+F+G
Sbjct: 601 LCLGQQLGAGVIDMWRISPLFQG 623

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708904|ref|XP_003393057.1| PREDICTED: hypothetical protein LOC100647131 [Bombus terrestris]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/82 (63%), Positives = 63/82 (76%)

Query: 27  HPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHV 86
           +PLG W +  S  LAC   T+GLFNISRF+ILSVQFG NFI+QF+ILSL++GIPL   HV
Sbjct: 634 NPLGKWPHALSPALACLSCTLGLFNISRFSILSVQFGANFIVQFLILSLVLGIPLLTLHV 693

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
            LGQ LA G + MW ISP+F+G
Sbjct: 694 CLGQRLAAGSVDMWKISPLFQG 715

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791730|ref|XP_395547.4| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC412081 [Apis mellifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 63/82 (76%)

Query: 27  HPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHV 86
           +PLG W +  S  LAC   T+GLFNISRF+ILS+QFG NFI+QF+ILSLI+GIPL   HV
Sbjct: 45  NPLGKWPHALSPALACLSCTLGLFNISRFSILSIQFGANFIVQFLILSLILGIPLLTLHV 104

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
            LGQ LA G + MW ISPVF+G
Sbjct: 105 CLGQRLAAGSVNMWKISPVFQG 126

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419066|ref|XP_003492059.1| PREDICTED: hypothetical protein LOC100741389 [Bombus impatiens]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 63/82 (76%)

Query: 27  HPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHV 86
           +PLG W +  S  LAC   T+GLFNISRF+ILSVQFG +FI+QF+ILSL++GIPL   HV
Sbjct: 634 NPLGKWPHALSPALACLSCTLGLFNISRFSILSVQFGASFIVQFLILSLVLGIPLLTLHV 693

Query: 87  SLGQLLAKGCIQMWIISPVFKG 108
            LGQ LA G + MW ISP+F+G
Sbjct: 694 CLGQRLAAGSVDMWKISPLFQG 715

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212071|gb|EFN87954.1| Sodium- and chloride-dependent GABA transporter 1 [Harpegnathos saltator]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 62/80 (77%)

Query: 29  LGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILSLIVGIPLFAFHVSL 88
           LG W +  S  LAC G T+GLFNISRFAILS+QFG NFI+QF+ILSLI+GIPL   HV L
Sbjct: 22  LGRWPHALSPALACLGCTLGLFNISRFAILSIQFGANFIVQFLILSLILGIPLLTLHVCL 81

Query: 89  GQLLAKGCIQMWIISPVFKG 108
           GQ LA G + MW ISP+F+G
Sbjct: 82  GQRLAAGSVDMWRISPIFQG 101

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0034049	1331	bdg "bedraggled" [Drosophila m	0.735	0.066	0.436	6.5e-14
UNIPROTKB|E9PJ65	134	SLC6A9 "Transporter" [Homo sap	0.859	0.776	0.355	1.2e-12
UNIPROTKB|F1N097	638	SLC6A9 "Transporter" [Bos taur	0.859	0.163	0.355	1.8e-11
UNIPROTKB|O18875	635	SLC6A8 "Sodium- and chloride-d	0.669	0.127	0.390	3e-11
UNIPROTKB|Q28039	638	SLC6A9 "Sodium- and chloride-d	0.859	0.163	0.355	3.8e-11
RGD|621243	638	Slc6a9 "solute carrier family	0.859	0.163	0.355	3.8e-11
UNIPROTKB|P28572	638	Slc6a9 "Sodium- and chloride-d	0.859	0.163	0.355	3.8e-11
UNIPROTKB|J3KPA5	579	SLC6A9 "Transporter" [Homo sap	0.768	0.160	0.375	4.2e-11
UNIPROTKB|E2RM41	632	SLC6A9 "Transporter" [Canis lu	0.768	0.147	0.375	4.9e-11
UNIPROTKB|P48029	635	SLC6A8 "Sodium- and chloride-d	0.669	0.127	0.365	4.9e-11

FB|FBgn0034049 bdg "bedraggled" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 6.5e-14, P = 6.5e-14
 Identities = 41/94 (43%), Positives = 57/94 (60%)

Query:    20 LHQQNL--EHPLGF---WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVNFIIQFIILS 74
             LHQ  L      GF   W +  S  LA  G T+G+FN+ RFA+L++ FG NF++QF++LS
Sbjct:   480 LHQLQLLLREKCGFNSQWPHAGSRTLALIGCTLGVFNMCRFAVLTINFGGNFLLQFLLLS 539

Query:    75 LIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             +I GIPL    + LG  +  G + MW ISP+  G
Sbjct:   540 VIFGIPLLWLQMCLGAKIRAGPVSMWKISPICAG 573

GO:0005326 "neurotransmitter transporter activity" evidence=ISS

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=ISS

GO:0007464 "R3/R4 cell fate commitment" evidence=IGI;IMP

UNIPROTKB|E9PJ65 SLC6A9 "Transporter" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query:     3 ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
             +  +S E    V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + 
Sbjct:    22 VAPSSPEQNGAVPSEATKRDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 79

Query:    63 GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    80 GGGAFMFPYFIMLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 126

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|F1N097 SLC6A9 "Transporter" [Bos taurus (taxid:9913)]

 Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query:     3 ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
             +  +S E    V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + 
Sbjct:     8 VAPSSPEQNGAVPSEATKKDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query:    63 GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    66 GGGAFMFPYFIMLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

UNIPROTKB|O18875 SLC6A8 "Sodium- and chloride-dependent creatine transporter 1" [Bos taurus (taxid:9913)]

 Score = 165 (63.1 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 32/82 (39%), Positives = 49/82 (59%)

Query:    28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
             P   W  +   +++C G  +GL N+ RF  L  + G   F+I +I+++LI GIP+F   +
Sbjct:    51 PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYILIALIGGIPIFFLEI 110

Query:    87 SLGQLLAKGCIQMWIISPVFKG 108
             SLGQ +  G I +W I P+FKG
Sbjct:   111 SLGQFMKAGSINVWNICPLFKG 132

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005309 "creatine:sodium symporter activity" evidence=IEA

UNIPROTKB|Q28039 SLC6A9 "Sodium- and chloride-dependent glycine transporter 1" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 38/107 (35%), Positives = 56/107 (52%)

Query:     3 ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
             +  +S E    V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + 
Sbjct:     8 VAPSSLEQNGAVPSEATKKDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query:    63 GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    66 GGGAFMFPYFIMLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

RGD|621243 Slc6a9 "solute carrier family 6 (neurotransmitter transporter, glycine), member 9" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%)

Query:     3 ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
             +  +S E    V  E     QNL    G W N+   +L   G  +GL N+ RF  L  + 
Sbjct:     8 VATSSPEQNGAVPSEATKKDQNLTR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query:    63 GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    66 GGGAFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=ISO;TAS

GO:0015816 "glycine transport" evidence=ISO

UNIPROTKB|P28572 Slc6a9 "Sodium- and chloride-dependent glycine transporter 1" [Rattus norvegicus (taxid:10116)]

 Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 38/107 (35%), Positives = 55/107 (51%)

Query:     3 ILKNSDEITKCVDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQF 62
             +  +S E    V  E     QNL    G W N+   +L   G  +GL N+ RF  L  + 
Sbjct:     8 VATSSPEQNGAVPSEATKKDQNLTR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRN 65

Query:    63 GVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             G   F+  + I+ +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    66 GGGAFMFPYFIMLVFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 112

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|J3KPA5 SLC6A9 "Transporter" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 36/96 (37%), Positives = 52/96 (54%)

Query:    14 VDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFII 72
             V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + G   F+  + I
Sbjct:    14 VPSEATKRDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFI 71

Query:    73 LSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             + +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    72 MLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 107

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

UNIPROTKB|E2RM41 SLC6A9 "Transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 36/96 (37%), Positives = 52/96 (54%)

Query:    14 VDREYDLHQQNLEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFII 72
             V  E     QNL+   G W N+   +L   G  +GL N+ RF  L  + G   F+  + I
Sbjct:    14 VPSEATKRDQNLKR--GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFI 71

Query:    73 LSLIVGIPLFAFHVSLGQLLAKGCIQMWIISPVFKG 108
             + +  GIPLF   +S GQ  ++GC+ +W ISP+FKG
Sbjct:    72 MLIFCGIPLFFMELSFGQFASQGCLGVWRISPMFKG 107

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005283 "sodium:amino acid symporter activity" evidence=IEA

UNIPROTKB|P48029 SLC6A8 "Sodium- and chloride-dependent creatine transporter 1" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 4.9e-11, P = 4.9e-11
 Identities = 30/82 (36%), Positives = 49/82 (59%)

Query:    28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHV 86
             P   W  +   +++C G  +GL N+ RF  L  + G   F+I +++++L+ GIP+F   +
Sbjct:    51 PRETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYVLIALVGGIPIFFLEI 110

Query:    87 SLGQLLAKGCIQMWIISPVFKG 108
             SLGQ +  G I +W I P+FKG
Sbjct:   111 SLGQFMKAGSINVWNICPLFKG 132

GO:0005309 "creatine:sodium symporter activity" evidence=IEA

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0015220 "choline transmembrane transporter activity" evidence=IEA

GO:0005308 "creatine transmembrane transporter activity" evidence=NAS

GO:0015881 "creatine transport" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006810 "transport" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006600 "creatine metabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	2e-12
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	4e-12
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	5e-12
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	1e-11
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	3e-11
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	3e-11
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	4e-11
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	7e-11
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	1e-10
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	1e-10
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	2e-10
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	7e-10
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	9e-10
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	1e-09
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	4e-09
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	6e-09
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	2e-08
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	2e-08
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	2e-08
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	2e-08
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	5e-08
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	6e-08
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	1e-07
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	1e-07
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	1e-07
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	3e-06
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	3e-06
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	3e-04

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score = 61.8 bits (151), Expect = 2e-12
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W N+   +L+  G  IGL N+ RF  L  + G   F+I + I  ++ GIP+F   V+LGQ
Sbjct: 4   WSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLEVALGQ 63

Query: 91  LLAKGCIQMWIISPVFKG 108
             ++G I  W I P+FKG
Sbjct: 64  YTSQGGITAWKICPLFKG 81

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score = 61.1 bits (148), Expect = 4e-12
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W N+   +L   G  +GL N+ RF  L  + G   F+  + I+ +  GIPLF   +S 
Sbjct: 18  GNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELSF 77

Query: 89  GQLLAKGCIQMWIISPVFKG 108
           GQ  ++GC+ +W +SP+FKG
Sbjct: 78  GQFASQGCLGVWRVSPMFKG 97

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +++C G  +GL N+ RF  L  + G   F+I ++++  + GIP+F   ++LGQ
Sbjct: 4   WTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIALGQ 63

Query: 91  LLAKGCIQMWIISPVFKG 108
            + +G I  W I+P+FKG
Sbjct: 64  FMKQGGINAWNIAPLFKG 81

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 31  FWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLG 89
            W N+   +LA  G ++GL N+ RF  L ++ G  +F+I + ++  +VGIPL    +++G
Sbjct: 3   LWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGGSFLIAYFVMLFLVGIPLLFLEMAVG 62

Query: 90  QLLAKGCIQMW-IISPVFKG 108
           Q L +G I++W  ISP F G
Sbjct: 63  QRLQQGSIRVWKAISPWFGG 82

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+C G  +GL N+ RF  L  + G   F+I + I+    GIPLF   +SLGQ
Sbjct: 4   WGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELSLGQ 63

Query: 91  LLAKGCIQMWIISPVFKG 108
             + G + +W   P+FKG
Sbjct: 64  YGSLGPLTVWKCCPIFKG 81

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSL 88
             W ++   +L+C G  +GL N+ RF  L+ +  G  F+I ++I+ L+VGIPLF   ++L
Sbjct: 1   EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYENGGGAFLIPYLIMLLLVGIPLFFLELAL 60

Query: 89  GQLLAKGCIQ-MWIISPVFKG 108
           GQ  ++G +   W I P+FKG
Sbjct: 61  GQYTSRGPVGAFWRICPLFKG 81

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W  +   +L+  G  +GL N+ RF  L+ + G   F+I + I+  + G+PLF    SL
Sbjct: 2   GNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFLECSL 61

Query: 89  GQLLAKGCIQMWIISPVFKG 108
           GQ  + G I +W   P+ +G
Sbjct: 62  GQFASLGPISVWRAVPLLQG 81

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+  G  +GL N+ RF  L  + G   F+I ++I  +  GIPLF   ++LGQ
Sbjct: 4   WSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIFLITAGIPLFFLELALGQ 63

Query: 91  LLAKGCIQMWI-ISPVFKG 108
              +G I +W  I P+FKG
Sbjct: 64  YTREGAIGVWRKICPLFKG 82

Length = 506

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAIL-SVQFGVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
           W N+   +L+C G  +GL NI RF  L     G  F+I + I  +  GIPLF   +++GQ
Sbjct: 5   WDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLELAIGQ 64

Query: 91  LLAKGCIQMW-IISPVFKG 108
            L KG I +W  ISP   G
Sbjct: 65  RLRKGSIGVWTTISPYLGG 83

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +F  +++C G  IGL N+ RF  L  + G   F+I + +  +  G+PLF    SLGQ
Sbjct: 46  WKGKFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQ 105

Query: 91  LLAKGCIQMWIISPVFKG 108
             + G + +W ++P+FKG
Sbjct: 106 YTSIGGLGVWKLAPMFKG 123

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W N+   +LA  G  +GL N+ RF  L  + G   F+I ++I+ ++ GIPLF   +++GQ
Sbjct: 4   WDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFLIPYVIMLVLEGIPLFFLELAIGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
            L KG I +W  ISP   G
Sbjct: 64  RLRKGSIGVWNTISPYLGG 82

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 54.9 bits (132), Expect = 7e-10
 Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W N+   ML C G  +GL N+ RF  L    G   F+I F+IL +  GIPL     ++GQ
Sbjct: 4   WDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFAIGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
            L KG + +W  I P  KG
Sbjct: 64  RLRKGSVGVWSTIHPTLKG 82

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 54.2 bits (130), Expect = 9e-10
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W N+   +L+  G  +GL N+ RF  L+ Q G   F+I ++++  + GIP+F   VSL
Sbjct: 2   GNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGIPIFFLEVSL 61

Query: 89  GQLLAKGCIQMWIISPVFKG 108
           GQ  ++G + +W   P  +G
Sbjct: 62  GQFASQGPVSVWKAIPALQG 81

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGV-NFIIQFIILSLIVGIPLFAFHVSLGQ 90
           W N    + AC    +GL N+ RF  L   +G   F+I ++I+ ++ G+PL    +++GQ
Sbjct: 7   WDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLELAVGQ 66

Query: 91  LLAKGCIQMW-IISPVFKG 108
            + +G I  W  ISP   G
Sbjct: 67  RMRQGSIGAWKSISPYLGG 85

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W N+   +L+  G  IGL N+ RF  L  + G   F+I ++I     GIPLF    +L
Sbjct: 3   GQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLETAL 62

Query: 89  GQLLAKGCIQMW-IISPVFKG 108
           GQ  ++G +  W  I P+F+G
Sbjct: 63  GQYTSQGGVTAWRKICPIFEG 83

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W N+   +L+  G  IGL N+ RF  L  + G   F I ++I     GIP+F    +L
Sbjct: 2   GQWNNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETAL 61

Query: 89  GQLLAKGCIQMW-IISPVFKG 108
           GQ  ++G +  W  I P+F+G
Sbjct: 62  GQYTSQGGVTCWRKICPLFEG 82

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W ++   +LA  G ++GL N+ RF  L  + G   +++ ++IL L++GIPLF   +S+GQ
Sbjct: 4   WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELSVGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
            + +G I +W  ISP   G
Sbjct: 64  RIRRGSIGVWNYISPKLGG 82

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 30  GFWMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSL 88
           G W N+   +L+  G  IGL N+ RF  L  + G   F+I +++  +  GIP+F    +L
Sbjct: 3   GHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETAL 62

Query: 89  GQLLAKGCIQMW-IISPVFKG 108
           GQ  ++G I  W  + P+F+G
Sbjct: 63  GQFTSEGGITCWRKVCPLFEG 83

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+  G  + L N+ RF  L  + G   F+I + +  +I G+PLF   ++LGQ
Sbjct: 4   WGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELALGQ 63

Query: 91  LLAKGCIQMWIISPVFKG 108
              +G   +W I P FKG
Sbjct: 64  YNREGAATVWKICPCFKG 81

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W ++   +LA  G ++GL N+ RF  L  + G   +++ ++IL +++GIPLF   +S+GQ
Sbjct: 4   WNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLIVIGIPLFFLELSVGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
            + +G I +W  ISP   G
Sbjct: 64  RIRRGSIGVWNYISPKLGG 82

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+  G  + L N+ RF  +  Q G   F+I + ++++  GIPLF   ++LGQ
Sbjct: 4   WGKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYTLMAIFGGIPLFYMELALGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
               GCI +W  I P+FKG
Sbjct: 64  YHRTGCISIWRKICPIFKG 82

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+  G  + L N+ RF  L  + G   F++ ++   +I G+PLF   ++LGQ
Sbjct: 4   WGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELALGQ 63

Query: 91  LLAKGCIQMWIISPVFKG 108
              +G   +W I P+FKG
Sbjct: 64  FNREGAAGVWKICPIFKG 81

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
           W +  + +LA  G  +GL N+ RF  +     G+ F I +++  +++ IP+    ++LGQ
Sbjct: 3   WGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQ 62

Query: 91  LLAKGCIQMW-IISPVFKG 108
               GC++ + +I+   KG
Sbjct: 63  AYRGGCVKAFNLINRRAKG 81

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W ++   +LA  G ++GL N+ RF  L  + G   +++ +++L +I+GIPLF   +++GQ
Sbjct: 4   WNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELAVGQ 63

Query: 91  LLAKGCIQMW 100
            + +G I +W
Sbjct: 64  RIRRGSIGVW 73

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W  +   +L+  G  + L N+ RF  L  + G   F+I + I+ ++ GIPLF   ++LGQ
Sbjct: 4   WSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELALGQ 63

Query: 91  LLAKGCIQMW-IISPVFKG 108
              KG I  W  I P+FKG
Sbjct: 64  YYRKGAITSWGRICPLFKG 82

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQ 90
           W ++   +L+  G  +GL N+ RF  L  + G   F+I + I     G+P+F   V+LGQ
Sbjct: 4   WASKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVALGQ 63

Query: 91  LLAKGCIQMWI-ISPVFKG 108
             ++G I  W  + P+F G
Sbjct: 64  YTSEGGITCWEKLCPIFTG 82

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 39  MLACFGTTIGLFNISRFAILSVQFGVN-FIIQFIILSLIVGIPLFAFHVSLGQLLAKGCI 97
           +L+  G  + L N+ RF  +  + G   F+I ++++ +  G+PLF   ++LGQ    GCI
Sbjct: 11  LLSVIGFAVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELALGQYHRSGCI 70

Query: 98  QMWI-ISPVFKG 108
            +W  I P+FKG
Sbjct: 71  TVWRKICPIFKG 82

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 39 MLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCI 97
          +LA  G+ +GL NI RF  ++ + G   F++ ++I  L+VGIPL     ++G+   K  +
Sbjct: 15 ILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAV 74

Query: 98 Q 98
           
Sbjct: 75 G 75

Length = 439

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG3659|consensus	629		99.98
KOG3660|consensus	629		99.97
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	99.95
COG0733	439	Na+-dependent transporters of the SNF family [Gene	99.92

>KOG3659|consensus

Probab=99.98  E-value=5e-34  Score=247.09  Aligned_cols=94  Identities=30%  Similarity=0.513  Sum_probs=89.1

Q ss_pred             CCCCCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-ee
Q psy16393         25 LEHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-II  102 (121)
Q Consensus        25 ~~~~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~~  102 (121)
                      +.++|++|++|++|+||++|+||++||+|||||+|++|| |+|++||++++++.|+|++++|+++||+.|+|++++| |+
T Consensus        74 e~e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri  153 (629)
T KOG3659|consen   74 ELEQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRI  153 (629)
T ss_pred             hhccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHh
Confidence            344599999999999999999999999999999999999 7999999999999999999999999999999999999 59


Q ss_pred             ccCCceeeeeEEEeee
Q psy16393        103 SPVFKGEHEKRYQKAR  118 (121)
Q Consensus       103 ~p~~~GiG~a~~~~~~  118 (121)
                      ||.++||||++++.++
T Consensus       154 ~P~l~Gigy~i~~i~~  169 (629)
T KOG3659|consen  154 APALKGIGYAICLIAF  169 (629)
T ss_pred             CHHhcCCchhhhHHHH
Confidence            9999999999988664

>KOG3660|consensus

Probab=99.97  E-value=3.4e-33  Score=244.43  Aligned_cols=92  Identities=34%  Similarity=0.690  Sum_probs=88.0

Q ss_pred             CCCCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeeee-ec
Q psy16393         26 EHPLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWI-IS  103 (121)
Q Consensus        26 ~~~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~~-~~  103 (121)
                      ++.|++|+||+||++||+|++||+||+|||||+|++|| |+|+|||+++++++|+|++++|+++||++++|++.+|| ++
T Consensus        31 ~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~  110 (629)
T KOG3660|consen   31 EPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRIC  110 (629)
T ss_pred             ccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhC
Confidence            34799999999999999999999999999999999999 69999999999999999999999999999999999997 99


Q ss_pred             cCCceeeeeEEEee
Q psy16393        104 PVFKGEHEKRYQKA  117 (121)
Q Consensus       104 p~~~GiG~a~~~~~  117 (121)
                      |++||+|+++++.+
T Consensus       111 Pif~GvG~a~v~~~  124 (629)
T KOG3660|consen  111 PIFKGVGWASVVIS  124 (629)
T ss_pred             hHhcCccHHHHHHH
Confidence            99999999987654

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=99.95  E-value=4.1e-30  Score=218.90  Aligned_cols=90  Identities=34%  Similarity=0.620  Sum_probs=79.5

Q ss_pred             CCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeee-eeccCC
Q psy16393         29 LGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMW-IISPVF  106 (121)
Q Consensus        29 R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~-~~~p~~  106 (121)
                      |++|+||.+|++||+|+++|+||+|||||+|++|| |+|++||+++++++|+|++++|+++||++++|++++| |++|.+
T Consensus         1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~   80 (523)
T PF00209_consen    1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF   80 (523)
T ss_dssp             ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            89999999999999999999999999999999999 7999999999999999999999999999999999999 599999


Q ss_pred             ceeeeeEEEeee
Q psy16393        107 KGEHEKRYQKAR  118 (121)
Q Consensus       107 ~GiG~a~~~~~~  118 (121)
                      ||+|+++++.++
T Consensus        81 ~giG~~~~~~~~   92 (523)
T PF00209_consen   81 KGIGYAMVLISF   92 (523)
T ss_dssp             HTHHHH---HHH
T ss_pred             cccccccccccc
Confidence            999999987654

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=99.92  E-value=3.2e-26  Score=193.62  Aligned_cols=88  Identities=24%  Similarity=0.395  Sum_probs=82.5

Q ss_pred             CCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeeee-ec--
Q psy16393         28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWI-IS--  103 (121)
Q Consensus        28 ~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~~-~~--  103 (121)
                      +|++|+||.+|+||++|+|||+||+|||||+.++|| |+|++||+++++++|+|++..|+++||++|++++++++ +.  
T Consensus         4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~   83 (439)
T COG0733           4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK   83 (439)
T ss_pred             cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence            799999999999999999999999999999999999 79999999999999999999999999999999999996 76  


Q ss_pred             cCCceeeeeEEE
Q psy16393        104 PVFKGEHEKRYQ  115 (121)
Q Consensus       104 p~~~GiG~a~~~  115 (121)
                      +.++.+|+..++
T Consensus        84 ~~~~~~G~~gv~   95 (439)
T COG0733          84 KKWEWIGWFGVL   95 (439)
T ss_pred             ccchhhhhHHHH
Confidence            568888876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	99.96

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=99.96  E-value=9.8e-32  Score=229.60  Aligned_cols=91  Identities=24%  Similarity=0.310  Sum_probs=84.6

Q ss_pred             CCCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcc----cccccceeeee-
Q psy16393         28 PLGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQ----LLAKGCIQMWI-  101 (121)
Q Consensus        28 ~R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq----~~~~g~i~~~~-  101 (121)
                      +|++|+||++|+|||+|+|||+||+|||||+|++|| |+|++||+++++++|+|++++|+++||    ++|++++.+|+ 
T Consensus         4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~   83 (519)
T 2a65_A            4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL   83 (519)
T ss_dssp             -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence            699999999999999999999999999999999999 799999999999999999999999999    77889999995 


Q ss_pred             eccC--CceeeeeEEEeee
Q psy16393        102 ISPV--FKGEHEKRYQKAR  118 (121)
Q Consensus       102 ~~p~--~~GiG~a~~~~~~  118 (121)
                      ++|.  ++|+|+++++.++
T Consensus        84 l~~~~~~~giG~~~v~~~~  102 (519)
T 2a65_A           84 LWRNRFAKILGVFGLWIPL  102 (519)
T ss_dssp             HSCSHHHHHHHTHHHHHHH
T ss_pred             hcCCcCCchhhHHHHHHHH
Confidence            8876  9999998776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	3e-08

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 32  WMNEFSSMLACFGTTIGLFNISRFAILSVQF-GVNFIIQFIILSLIVGIPLFAFHVSLGQ 90
           W      +LA  G  +GL N  RF + + +  G  F+I +II  L+VGIPL     ++G+
Sbjct: 4   WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGR 63

Query: 91  LLAKGCIQMW 100
                     
Sbjct: 64  YGGAQGHGTT 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	99.96

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=4.1e-32  Score=226.08  Aligned_cols=89  Identities=26%  Similarity=0.318  Sum_probs=84.0

Q ss_pred             CCCCcchhHHHHHHhhhhccCcceeeccccccccC-ceehhHHHHHHHHhhhhHHHHHHhhcccccccceeeee-e----
Q psy16393         29 LGFWMNEFSSMLACFGTTIGLFNISRFAILSVQFG-VNFIIQFIILSLIVGIPLFAFHVSLGQLLAKGCIQMWI-I----  102 (121)
Q Consensus        29 R~~W~sk~~fila~~G~avGLgNiWrFPyl~~~nG-g~Fli~Y~i~l~~~giPl~~lE~alGq~~~~g~i~~~~-~----  102 (121)
                      |++|+||+||++||+|+|||+||+|||||+|++|| |+|++||+++++++|+|++++|+++||++|++++++|+ +    
T Consensus         1 R~~W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~   80 (509)
T d2a65a1           1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL   80 (509)
T ss_dssp             CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHh
Confidence            89999999999999999999999999999999999 79999999999999999999999999999999999997 4    


Q ss_pred             --ccCCceeeeeEEEee
Q psy16393        103 --SPVFKGEHEKRYQKA  117 (121)
Q Consensus       103 --~p~~~GiG~a~~~~~  117 (121)
                        +|.++|+|+++++.+
T Consensus        81 ~~~~~~~giG~~~~~~~   97 (509)
T d2a65a1          81 WRNRFAKILGVFGLWIP   97 (509)
T ss_dssp             SCSHHHHHHHTHHHHHH
T ss_pred             ccCcchhHHhHHHHHHH
Confidence              577899999876544