Psyllid ID: psy16433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFELDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR
Secondary Structure (PSIPRED)
cHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccEEEEEcccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHcccHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEEccccccccEEEEEcccEEEEccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccHHccccccccccccccccccccEEEEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mldiqswwevpsiaHFCSLFRAAFNLLDFDIEELEEALltdgtedtgsSLLQELIVRLLCGcygrnhgisIFNYQMFLRRLFRTKCReygrenpfdsdidfqflplRTKVEILQALCDFRLDADDVLDCLKnlesdslrlqplgydrnqsaFWYFYGtrlyredypkVVSQIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKKkkeappkrgrkrirpldpseeepefeldlgagtWQVVCYTEEDWTKLAEAtadapckeektlhhvltedflpeipRLFEEKRNLQR
Flexible Loop (DISEMBL)
mldiqswwEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRenpfdsdidfqFLPLRTKVEILQALCDFRLDADDVLDCLKNLesdslrlqplgydrnqSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTvhtkkkkkrkLSALWKalkkkkeappkrgrkrirpldpseeepefeldlgagtWQVVCYTEEDWTKLAEATADAPCKEEKTLHhvltedflpeiprlfEEKRNLQR
Low Complexity Region (SEG)
MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTVHTkkkkkrklsalwkalkkkkeappkrgrkRIRPLDPSEEEPEFELDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR
Disordered region (IsUnstruct)
***IQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTV********************************************ELDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIP***********
Disordered Region (DISOPRED)
*LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYP****************************************************************************GTWQVVCYTEEDW********************VLTEDFLPEIP***********
Disordered Region (DISEMBL)
MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTV*********LSALWKAL**************IRPL*********ELDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR
Disordered Region (DISPRO)
MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY***************************************************************************GAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFELDLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q9BXF3	1484	Cat eye syndrome critical	yes	N/A	0.895	0.179	0.400	3e-52

>sp|Q9BXF3|CECR2_HUMAN Cat eye syndrome critical region protein 2 OS=Homo sapiens GN=CECR2 PE=1 SV=2

 Score =  205 bits (521), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 121/302 (40%), Positives = 174/302 (57%), Gaps = 36/302 (11%)

Query: 3   DIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGC 62
           +++SWWEVP+IAHFCSLFR AF L DF+IEELE AL  D  E      + +LI  LL GC
Sbjct: 13  ELRSWWEVPAIAHFCSLFRTAFRLPDFEIEELEAALHRDDVE-----FISDLIACLLQGC 67

Query: 63  YGRNHGISIFNYQMFLRRLFRTKCR-EYGRENPFDSDIDFQFLPLRTKVEILQALCDFRL 121
           Y R   I+   +  +L  +   +   E G+ NP   +  FQ LPLRT+VEIL  LCD+RL
Sbjct: 68  YQR-RDITPQTFHSYLEDIINYRWELEEGKPNPL-REASFQDLPLRTRVEILHRLCDYRL 125

Query: 122 DADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGPQ 181
           DADDV D LK L++DSLR++PLG D + + +WYFYGTR+Y+ED            + G  
Sbjct: 126 DADDVFDLLKGLDADSLRVEPLGEDNSGALYWYFYGTRMYKED-----------PVQGKS 174

Query: 182 VGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFEL--- 238
            G  +L       + + ++ +S++     K++  PPKR +K    +  SE++ E  L   
Sbjct: 175 NGELSL-----SRESEGQKNVSSIPGKTGKRRGRPPKR-KKLQEEILLSEKQEENSLASE 228

Query: 239 --------DLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFE 290
                     G GTW ++C TEE+W ++ E+  +     E+ L+ +L+EDFLPEI  +  
Sbjct: 229 PQTRHGSQGPGQGTWWLLCQTEEEWRQVTESFRERTSLRERQLYKLLSEDFLPEICNMIA 288

Query: 291 EK 292
           +K
Sbjct: 289 QK 290

Part of the CERF (CECR2-containing-remodeling factor) complex, which facilitates the perturbation of chromatin structure in an ATP-dependent manner. May be involved through its interaction with LRPPRC in the integration of cytoskeletal network with vesicular trafficking, nucleocytosolic shuttling, transcription, chromosome remodeling and cytokinesis.
Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
307176633	2192	Cat eye syndrome critical region protein	0.898	0.121	0.525	1e-77
91078952	1789	PREDICTED: similar to dikar CG32393-PA [	0.757	0.125	0.542	1e-74
193674159	1560	PREDICTED: hypothetical protein LOC10016	0.552	0.105	0.806	2e-74
242022306	1788	conserved hypothetical protein [Pediculu	0.545	0.090	0.831	3e-74
239791431	187	ACYPI004988 [Acyrthosiphon pisum]	0.552	0.877	0.806	7e-73
270003689	1867	hypothetical protein TcasGA2_TC002957 [T	0.781	0.124	0.582	4e-71
156541982	2213	PREDICTED: hypothetical protein LOC10011	0.898	0.120	0.511	4e-71
357627297	2064	hypothetical protein KGM_21502 [Danaus p	0.545	0.078	0.779	2e-69
321464691	1227	hypothetical protein DAPPUDRAFT_323019 [	0.545	0.132	0.731	5e-67
328790182	1710	PREDICTED: hypothetical protein LOC40950	0.545	0.094	0.753	7e-67

>gi|307176633|gb|EFN66101.1| Cat eye syndrome critical region protein 2 [Camponotus floridanus]

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 157/299 (52%), Positives = 200/299 (66%), Gaps = 32/299 (10%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           +LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIE+LEEALLTDG   T   LLQELIV+LL 
Sbjct: 8   ILDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEDLEEALLTDG--GTEGRLLQELIVKLLE 65

Query: 61  GCYGRN--HGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCD 118
           GC   +  + IS FNYQMFLRRLFR KC+EY  ENPF++D+DF+ LPLR KVEIL+ALCD
Sbjct: 66  GCLPNDTRNDISTFNYQMFLRRLFRKKCQEYKCENPFNTDVDFELLPLRQKVEILRALCD 125

Query: 119 FRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSIT 178
           FRLDA+DV   L NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY    +    +  +
Sbjct: 126 FRLDAEDVEQSLSNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDYIDSSNSASHKQKS 185

Query: 179 GPQVGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFEL 238
            P+          V  +++++++ ++L     K +E+                       
Sbjct: 186 KPKDKKRKKRRNRVAKEEEEEKEEASLIDGENKGRES----------------------- 222

Query: 239 DLGAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR 297
                 WQVVC+T++DW++L E   D+    E+ L+  L+EDF+PEIP+LFE K   QR
Sbjct: 223 -----VWQVVCFTQQDWSRLVEKFRDSEYDTEQKLYRTLSEDFMPEIPKLFELKEKQQR 276

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078952|ref|XP_974145.1| PREDICTED: similar to dikar CG32393-PA [Tribolium castaneum]

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 161/297 (54%), Positives = 191/297 (64%), Gaps = 72/297 (24%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           +LDIQSWWEVPSIAHFCSLFR AFNLLDFDIE+LEEALLTDGTE+T  S LQELIVRLL 
Sbjct: 8   ILDIQSWWEVPSIAHFCSLFRTAFNLLDFDIEDLEEALLTDGTEET--SWLQELIVRLLS 65

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC   N  IS FNYQMFLRRLFR KC+E+ + NPF++D+DFQ LPLRTKV+IL ALCDFR
Sbjct: 66  GCLPNNE-ISTFNYQMFLRRLFRQKCQEHDQYNPFNTDVDFQLLPLRTKVDILHALCDFR 124

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQSITGP 180
           LDADDVLD LKNLE+DSLR++PLGYD N+SA+WYFYGTRLYRED+               
Sbjct: 125 LDADDVLDQLKNLEADSLRVEPLGYDSNESAYWYFYGTRLYREDF--------------- 169

Query: 181 QVGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEFELDL 240
                    KT + KKK      ++W+ +                      E+  F+L+ 
Sbjct: 170 ---------KTKNNKKK------SVWQVI-------------------CFTEDDWFQLN- 194

Query: 241 GAGTWQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRLFEEKRNLQR 297
                           K  ++TA    K E+ LH  L+E+FLPE+PRLF EK  L R
Sbjct: 195 ---------------KKFKKSTA----KCERELHRTLSENFLPELPRLFREKERLAR 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193674159|ref|XP_001950556.1| PREDICTED: hypothetical protein LOC100163939 [Acyrthosiphon pisum]

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 133/165 (80%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           M DI SWWEVPSIAHFCSLFR +F+LLDFDIE+LE ALLTDGTED G+SLLQELI RLL 
Sbjct: 1   MDDIHSWWEVPSIAHFCSLFRVSFDLLDFDIEDLEAALLTDGTEDNGNSLLQELIARLLS 60

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC+G N+ IS FNYQMFLRRLFR KC+EY  +NPF+SDIDFQFLPLRTKVEIL ALCDFR
Sbjct: 61  GCFG-NNSISTFNYQMFLRRLFREKCKEYNFQNPFNSDIDFQFLPLRTKVEILHALCDFR 119

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 165
           LDADDV++ LKNL+SDSLR+ PLGYD N+SA+WYFYGTRLYREDY
Sbjct: 120 LDADDVMESLKNLDSDSLRVHPLGYDENKSAYWYFYGTRLYREDY 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022306|ref|XP_002431581.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516889|gb|EEB18843.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 138/166 (83%), Positives = 147/166 (88%), Gaps = 4/166 (2%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           M DIQSW EVPSIAHFCSLFRAAFNLLDFDIEE   ALLTDG ED+GSSLLQELIVRLLC
Sbjct: 1   MDDIQSWSEVPSIAHFCSLFRAAFNLLDFDIEE---ALLTDGAEDSGSSLLQELIVRLLC 57

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC   N  IS FNYQMFLRRLFR KC EYGRENPF++DIDFQFLPLRTKVEIL ALCDFR
Sbjct: 58  GCIQSNE-ISTFNYQMFLRRLFRQKCLEYGRENPFNTDIDFQFLPLRTKVEILHALCDFR 116

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYP 166
           LDADDV D LKNLESDSLR++PLG+D  +SA+WYFYGTRLYRED+P
Sbjct: 117 LDADDVQDLLKNLESDSLRVEPLGHDEKKSAYWYFYGTRLYREDFP 162

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239791431|dbj|BAH72183.1| ACYPI004988 [Acyrthosiphon pisum]

 Score =  280 bits (715), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 148/165 (89%), Gaps = 1/165 (0%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           M DI SWWEVPSIAHFCSLFR +F+LLDFDIE+LE ALLTDGTED G+SLLQELI RLL 
Sbjct: 1   MDDIHSWWEVPSIAHFCSLFRVSFDLLDFDIEDLEAALLTDGTEDNGNSLLQELIARLLS 60

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC+G N+ IS FNYQMFLRRLFR KC+EY  +NPF+SDIDFQFLPLRTKVEIL ALCDFR
Sbjct: 61  GCFG-NNSISTFNYQMFLRRLFREKCKEYNFQNPFNSDIDFQFLPLRTKVEILHALCDFR 119

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 165
           LDADDV++ LKNL+SDSLR+ PLGYD N+SA+WYFYGTRLYREDY
Sbjct: 120 LDADDVMESLKNLDSDSLRVHPLGYDENKSAYWYFYGTRLYREDY 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003689|gb|EFA00137.1| hypothetical protein TcasGA2_TC002957 [Tribolium castaneum]

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 148/254 (58%), Positives = 180/254 (70%), Gaps = 22/254 (8%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           +LDIQSWWEVPSIAHFCSLFR AFNLLDFDIE+LEEALLTDGTE+T  S LQELIVRLL 
Sbjct: 8   ILDIQSWWEVPSIAHFCSLFRTAFNLLDFDIEDLEEALLTDGTEET--SWLQELIVRLLS 65

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC   N  IS FNYQMFLRRLFR KC+E+ + NPF++D+DFQ LPLRTKV+IL ALCDFR
Sbjct: 66  GCLPNNE-ISTFNYQMFLRRLFRQKCQEHDQYNPFNTDVDFQLLPLRTKVDILHALCDFR 124

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVS--QIVFQSIT 178
           LDADDVLD LKNLE+DSLR++PLGYD N+SA+WYFYGTRLYRED+    +  + V+Q I 
Sbjct: 125 LDADDVLDQLKNLEADSLRVEPLGYDSNESAYWYFYGTRLYREDFKTKNNKKKSVWQVIC 184

Query: 179 GPQVGIWTLFLKTVHTKKKKKRKLSALWK-----------------ALKKKKEAPPKRGR 221
             +   + L  K   +  K +R+L                      A K+  E  P+R  
Sbjct: 185 FTEDDWFQLNKKFKKSTAKCERELHRTLSENFLPELPRLFREKERLARKRLLENQPRRTS 244

Query: 222 KRIRPLDPSEEEPE 235
           +R+R ++ + E+ E
Sbjct: 245 RRLRKVENTTEKEE 258

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541982|ref|XP_001599540.1| PREDICTED: hypothetical protein LOC100114569 isoform 1 [Nasonia vitripennis]

 Score =  274 bits (700), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 158/309 (51%), Positives = 203/309 (65%), Gaps = 42/309 (13%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTD--GTEDTGSSLLQELIVRL 58
           +LDIQSWWEVPSIAHFCSLFR AFNLLDFDIE+LE+ALLTD   T   G  LLQELIVRL
Sbjct: 8   ILDIQSWWEVPSIAHFCSLFRDAFNLLDFDIEDLEQALLTDPSSTGTDGQDLLQELIVRL 67

Query: 59  LCGCYGRN--HGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQAL 116
           L GC   +  + IS FNYQMFLRRLFR KC+EY  +NPF++D+DF+ LPLR KVEIL++L
Sbjct: 68  LEGCLPDDTRNDISTFNYQMFLRRLFRKKCQEYQCDNPFNTDVDFELLPLRQKVEILRSL 127

Query: 117 CDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDYPKVVSQIVFQS 176
           CDFRLDA  V + L +L+SDSLR++PLG+DR  SA+WYFYGTRLYREDY  + +      
Sbjct: 128 CDFRLDAAGVEESLSDLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDYIDISN------ 181

Query: 177 ITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKKKKEAPPKRGRKRIRPLDPSEEEPEF 236
                         TV + K+K+           + ++   KR R R+   +  EEE E 
Sbjct: 182 --------------TVLSPKQKQ----------NRPRDKRRKRCRSRLAKEEEEEEEKEE 217

Query: 237 ELDLGAGT--------WQVVCYTEEDWTKLAEATADAPCKEEKTLHHVLTEDFLPEIPRL 288
           +  + A +        WQVVC+T +DW++L E   D+    E+ L+  L++DF+PEIP+L
Sbjct: 218 DCLVSADSEDCERESIWQVVCFTLQDWSRLVEKFKDSKHATERKLYKTLSQDFMPEIPKL 277

Query: 289 FEEKRNLQR 297
           F+ K   QR
Sbjct: 278 FDLKEKQQR 286

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357627297|gb|EHJ77033.1| hypothetical protein KGM_21502 [Danaus plexippus]

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 146/163 (89%), Gaps = 1/163 (0%)

Query: 2   LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCG 61
           LDIQSWWEVPSIA+FCSLFR AFNLLDFDIEELEEALLTDGTE++ SSLL ELIVRLL G
Sbjct: 7   LDIQSWWEVPSIAYFCSLFRTAFNLLDFDIEELEEALLTDGTEESASSLLTELIVRLLNG 66

Query: 62  CYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFRL 121
           C G N+ IS FN+QM+LRRLFR KC+E G+ NPFD+DI+FQFLPLRTKVEIL +LCDFRL
Sbjct: 67  CLG-NNDISAFNFQMYLRRLFRQKCQEKGKCNPFDNDINFQFLPLRTKVEILYSLCDFRL 125

Query: 122 DADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 164
           DA+DV D  +NLE++SLR++PLG+D N SA+WYFYGTRLYRED
Sbjct: 126 DAEDVYDLFRNLEAESLRVEPLGWDDNDSAYWYFYGTRLYRED 168

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464691|gb|EFX75697.1| hypothetical protein DAPPUDRAFT_323019 [Daphnia pulex]

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 120/164 (73%), Positives = 145/164 (88%), Gaps = 2/164 (1%)

Query: 1   MLDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLC 60
           M DIQSW+EVPSIAHFCSLFRAAF+L+DFDIEELEEALLTDG ED GSSL+Q+LIVRLL 
Sbjct: 1   MEDIQSWYEVPSIAHFCSLFRAAFSLVDFDIEELEEALLTDGAEDMGSSLIQDLIVRLLN 60

Query: 61  GCYGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDFR 120
           GC G    ++  NYQMFLRRLFR K ++ G++NPF+SD+DF+FLPLRTKVEIL  LCD R
Sbjct: 61  GCMGTGD-VTSSNYQMFLRRLFRQKFQD-GKKNPFNSDVDFRFLPLRTKVEILHFLCDCR 118

Query: 121 LDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 164
           L+ADDV++ LKNLE+DSLR++PLGYD N++A+WYFYGTRLY+E+
Sbjct: 119 LEADDVMEVLKNLEADSLRVEPLGYDDNKAAYWYFYGTRLYKEE 162

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790182|ref|XP_393011.4| PREDICTED: hypothetical protein LOC409504 [Apis mellifera]

 Score =  260 bits (664), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 125/166 (75%), Positives = 141/166 (84%), Gaps = 4/166 (2%)

Query: 2   LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCG 61
           LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIE+LEEALLTDG   T   L+QELIVRLL G
Sbjct: 19  LDIQSWWEVPSIAHFCSLFRAAFNLLDFDIEDLEEALLTDG--GTEGRLVQELIVRLLEG 76

Query: 62  CYGRN--HGISIFNYQMFLRRLFRTKCREYGRENPFDSDIDFQFLPLRTKVEILQALCDF 119
           C   +  + IS FNYQMFLRRLFR KC+EY  ENPF++D+DF+ LPLR KVEIL+ALCDF
Sbjct: 77  CLPNDTRNDISTFNYQMFLRRLFRKKCQEYKCENPFNTDVDFELLPLRQKVEILRALCDF 136

Query: 120 RLDADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYREDY 165
           RLDA+DV   L NL+SDSLR++PLG+DR  SA+WYFYGTRLYREDY
Sbjct: 137 RLDAEDVEQSLNNLDSDSLRVEPLGHDRKNSAYWYFYGTRLYREDY 182

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
UNIPROTKB|Q9BXF3	1484	CECR2 "Cat eye syndrome critic	0.521	0.104	0.527	3e-48
RGD|1564182	1390	Cecr2 "cat eye syndrome chromo	0.434	0.092	0.474	4.7e-35
UNIPROTKB|F1NJP2	1435	CECR2 "Uncharacterized protein	0.420	0.087	0.481	8.5e-35
UNIPROTKB|F1MSA7	1399	F1MSA7 "Uncharacterized protei	0.420	0.089	0.488	3.3e-34
DICTYBASE|DDB_G0268224	569	DDB_G0268224 "DDT domain-conta	0.528	0.275	0.263	1.2e-11
ASPGD|ASPL0000017324	827	AN3668 [Emericella nidulans (t	0.531	0.191	0.254	1.4e-05

UNIPROTKB|Q9BXF3 CECR2 "Cat eye syndrome critical region protein 2" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 3.0e-48, Sum P(2) = 3.0e-48
 Identities = 86/163 (52%), Positives = 111/163 (68%)

Query:     3 DIQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGC 62
             +++SWWEVP+IAHFCSLFR AF L DF+IEELE AL  D  E      + +LI  LL GC
Sbjct:    13 ELRSWWEVPAIAHFCSLFRTAFRLPDFEIEELEAALHRDDVE-----FISDLIACLLQGC 67

Query:    63 YGRNHGISIFNYQMFLRRLFRTKCR-EYGRENPFDSDIDFQFLPLRTKVEILQALCDFRL 121
             Y R   I+   +  +L  +   +   E G+ NP   +  FQ LPLRT+VEIL  LCD+RL
Sbjct:    68 YQRRD-ITPQTFHSYLEDIINYRWELEEGKPNPL-REASFQDLPLRTRVEILHRLCDYRL 125

Query:   122 DADDVLDCLKNLESDSLRLQPLGYDRNQSAFWYFYGTRLYRED 164
             DADDV D LK L++DSLR++PLG D + + +WYFYGTR+Y+ED
Sbjct:   126 DADDVFDLLKGLDADSLRVEPLGEDNSGALYWYFYGTRMYKED 168

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0000910 "cytokinesis" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0043044 "ATP-dependent chromatin remodeling" evidence=IDA

GO:0090537 "CERF complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006309 "apoptotic DNA fragmentation" evidence=TAS

GO:0006915 "apoptotic process" evidence=IDA

RGD|1564182 Cecr2 "cat eye syndrome chromosome region, candidate 2" [Rattus norvegicus (taxid:10116)]

 Score = 300 (110.7 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
 Identities = 65/137 (47%), Positives = 86/137 (62%)

Query:    29 FDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCR- 87
             F  EELE AL  D  +      + +LI  LL GCY R   I+   +  +L  +   +   
Sbjct:     1 FQCEELEAALHRDDVD-----FISDLIACLLQGCYQRRD-ITPQTFHSYLEDIINYRWEL 54

Query:    88 EYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDR 147
             E G+ NP   +  FQ LPLRT+VEIL  LCD+RLDADDV D LK L++DSLR++PLG D 
Sbjct:    55 EEGKPNPL-REASFQDLPLRTRVEILHRLCDYRLDADDVFDLLKGLDADSLRVEPLGEDN 113

Query:   148 NQSAFWYFYGTRLYRED 164
             + + +WYFYGTR+Y+ED
Sbjct:   114 SGALYWYFYGTRMYKED 130

GO:0001842 "neural fold formation" evidence=ISO

GO:0001843 "neural tube closure" evidence=ISO

GO:0005719 "nuclear euchromatin" evidence=ISO

GO:0021915 "neural tube development" evidence=ISO

GO:0060122 "inner ear receptor stereocilium organization" evidence=ISO

GO:0090102 "cochlea development" evidence=ISO

UNIPROTKB|F1NJP2 CECR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 291 (107.5 bits), Expect = 8.5e-35, Sum P(2) = 8.5e-35
 Identities = 64/133 (48%), Positives = 84/133 (63%)

Query:    33 ELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCR-EYGR 91
             ELE AL  D  E      + +LI  LL GCY R   I+   +  +L  +   +   E G+
Sbjct:     1 ELEAALHRDDVE-----FISDLIACLLQGCYQRRD-ITSQTFHSYLEDIINYRWELEEGK 54

Query:    92 ENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSA 151
              NP   +  FQ LPLRT+VEIL  LCD+RLDADDV D LK L++DSLR++PLG D + + 
Sbjct:    55 PNPL-RESTFQELPLRTRVEILHRLCDYRLDADDVFDLLKGLDADSLRVEPLGEDSSGAL 113

Query:   152 FWYFYGTRLYRED 164
             +WYFYGTR+Y+ED
Sbjct:   114 YWYFYGTRMYKED 126

GO:0005719 "nuclear euchromatin" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

UNIPROTKB|F1MSA7 F1MSA7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 300 (110.7 bits), Expect = 3.3e-34, Sum P(2) = 3.3e-34
 Identities = 65/133 (48%), Positives = 85/133 (63%)

Query:    33 ELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISIFNYQMFLRRLFRTKCR-EYGR 91
             ELE AL  D  E      + +LI RLL GCY R   I+   +  +L  +   +   E G+
Sbjct:     1 ELEAALHRDDVE-----FISDLIARLLQGCYQRRD-ITPQTFHSYLEDIINYRWELEEGK 54

Query:    92 ENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSA 151
              NP   +  FQ LPLRT+VEIL  LCD+RLDADDV D LK L++DSLR++PLG D + + 
Sbjct:    55 PNPL-REASFQDLPLRTRVEILHRLCDYRLDADDVFDLLKGLDADSLRVEPLGEDSSGAL 113

Query:   152 FWYFYGTRLYRED 164
             +WYFYGTR+Y+ED
Sbjct:   114 YWYFYGTRMYKED 126

GO:0021915 "neural tube development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005719 "nuclear euchromatin" evidence=IEA

DICTYBASE|DDB_G0268224 DDB_G0268224 "DDT domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 162 (62.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 45/171 (26%), Positives = 87/171 (50%)

Query:     4 IQSWWEVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCY 63
             I+S WE P+I  + + F+    +     ++LE +LL          LL ++ + LL    
Sbjct:    55 IRSMWETPAIYQYLTFFKQTLGVRVISTDDLESSLLNP---KNNIKLLGDIFIPLLKELL 111

Query:    64 G--RNHGISIFNYQMFLRRLFRTKCREYG--RENPFDSDID-FQFLPLRTKVEILQALCD 118
                +   ++   +++FL++    +   +    ENPF+ D   F  + L+ ++ +L+++CD
Sbjct:   112 PVTKARTLNHTTWELFLKQELNKENSFFNCFEENPFNEDSSLFSEVSLKNRILLLKSVCD 171

Query:   119 FRLD-ADDVLDCLKNL----ESDSLRLQPLGYDRNQSAF-WYFYGTRLYRE 163
             + L  + ++L+ +K +    E+D LR  P+G   +Q  F WYF   RLY+E
Sbjct:   172 WNLSKSPNILESVKQIIAADETDKLRNLPMGILNDQKEFYWYFGDHRLYKE 222

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000017324 AN3668 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 44/173 (25%), Positives = 76/173 (43%)

Query:     4 IQSWWEVPSIAHFCSLFRAAFNL-LDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGC 62
             +++ WE  ++  + ++F     +  DF IE+LE   L  G  +    LL+  I   L   
Sbjct:    31 LRNSWEFANLMQYIAIFGKLMKIDEDFGIEDLENECLKPGPSE---KLLE--IGLCLLKW 85

Query:    63 YGRNHGISIFNYQMFLRRLFRTKCREYGRENPFDSD-IDFQFLPLRT--KVEILQALCDF 119
                + G+   N+  + RR +  K       NPF  D +  +FL      K+ +L  L  +
Sbjct:    86 VSSHRGLRFDNFDEYTRRQYNAKAPHI--PNPFGYDEVPKRFLDFDVFLKLRVLHQLTVW 143

Query:   120 RL-DADDVLDCL-KNLESDSL--RLQPLGYDRNQSAFWYFYGTRLYREDYPKV 168
                + D + D + +  E D L  R++ +GYDR    ++     RLYR   P +
Sbjct:   144 TFWNPDRIRDKMPEQREIDQLQWRIEEIGYDRKGRYYYILDDNRLYRRTDPPI 196

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
KOG1473|consensus	1414		99.38
PF02791	61	DDT: DDT domain; InterPro: IPR004022 This domain i	98.47
smart00571	63	DDT domain in different transcription and chromoso	98.08
PF15613	38	WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2	97.84
PF15612	50	WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B	97.5

>KOG1473|consensus

Probab=99.38  E-value=1.1e-12  Score=136.88  Aligned_cols=119  Identities=27%  Similarity=0.413  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccCCCCCchhhhHHHHHHHHcccccCCC---------------Cc-----
Q psy16433          9 EVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRN---------------HG-----   68 (297)
Q Consensus         9 e~a~I~~Fl~~F~~~l~L~~f~~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~~~---------------r~-----   68 (297)
                      ...+|+.||..|+..|.|.+|.+|||..||..-+    .+.+|+++|++||++|+...               +.     
T Consensus       194 ~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~----~ssLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~l  269 (1414)
T KOG1473|consen  194 DALSIYEVLRSFSRQLRISPFRFEDFCAALISHE----QSSLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYL  269 (1414)
T ss_pred             HHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcC----chhHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeeh
Confidence            3568999999999999999999999999998643    57899999999999986431               11     


Q ss_pred             cccccHHHHHHHHHHhhh----hhcCCCCCCCCCCCCCCCChhhHHHHHHHHHHhhcCchhHHHHhc
Q psy16433         69 ISIFNYQMFLRRLFRTKC----REYGRENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLK  131 (297)
Q Consensus        69 i~~~~we~~L~~~~~~~~----~e~~~~nPl~~~~~f~~L~~~~Kl~ILk~Lce~~l~~~~vr~~ik  131 (297)
                      |..-+|-.+|+.++.+..    +-+...|||-.+.+|-..++..|++||+.||+-.|+.+++|+.|.
T Consensus       270 iD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~eY~~~pv~~klkILQ~L~Dq~l~~~s~R~e~~  336 (1414)
T KOG1473|consen  270 IDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDEYPYRPVSNKLKILQFLCDQFLTVNSLRDEID  336 (1414)
T ss_pred             hccccHHHHHHHHHHhccccCcchhhhhccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            123479999999997542    122246899878899999999999999999999999988887653

>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain

Probab=98.47  E-value=2.1e-07  Score=67.69  Aligned_cols=52  Identities=27%  Similarity=0.443  Sum_probs=45.2

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCHHHHHHHhccCCCCCchhhhHHHHHHHHcccccC
Q psy16433          9 EVPSIAHFCSLFRAAFNLLDFDIEELEEALLTDGTEDTGSSLLQELIVRLLCGCYG   64 (297)
Q Consensus         9 e~a~I~~Fl~~F~~~l~L~~f~~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~   64 (297)
                      ++..|++||+.|+++|+|++|++++|+.||....+    +.++.+||++||+.+..
T Consensus         6 ~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~----~~ll~ei~~~LL~~l~~   57 (61)
T PF02791_consen    6 DLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDP----SGLLAEIHCALLKALLA   57 (61)
T ss_pred             HHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCc----chhHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999997542    44999999999988643

The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.

>smart00571 DDT domain in different transcription and chromosome remodeling factors

Probab=98.08  E-value=4.7e-06  Score=60.98  Aligned_cols=52  Identities=25%  Similarity=0.324  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCC--HHHHHHHhccCCCCCchhhhHHHHHHHHcccccC
Q psy16433          9 EVPSIAHFCSLFRAAFNLLDFD--IEELEEALLTDGTEDTGSSLLQELIVRLLCGCYG   64 (297)
Q Consensus         9 e~a~I~~Fl~~F~~~l~L~~f~--~eeLE~aLl~p~~~d~~~~lL~~l~~~LL~~~~~   64 (297)
                      .+..|++||+.|+..|.|++|+  +++|+.||....    +..+|.++|+.||+.++.
T Consensus         6 d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~----~~~ll~ei~~~LL~~i~~   59 (63)
T smart00571        6 DLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRD----QNGLLTEVHVVLLRAILK   59 (63)
T ss_pred             HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCC----cchHHHHHHHHHHHHHHh
Confidence            3568999999999999999999  999999998632    357999999999988643

>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2

Probab=97.84  E-value=1.8e-05  Score=52.20  Aligned_cols=27  Identities=37%  Similarity=0.763  Sum_probs=21.6

Q ss_pred             ccccccccCCCcEEEEEe---------CcEEEEecC
Q psy16433        139 RLQPLGYDRNQSAFWYFY---------GTRLYREDY  165 (297)
Q Consensus       139 R~ePlG~D~~g~~Yw~f~---------d~RLYrE~~  165 (297)
                      |.+|||.|+.||+||+|.         ..|++-+..
T Consensus         1 R~~pLG~DR~~NrYwwf~~s~~~~~~~~~~~~v~~~   36 (38)
T PF15613_consen    1 RLKPLGKDRYGNRYWWFSSSSSNSQYYNGGRFVEQG   36 (38)
T ss_pred             CcccccccCCCceEEEEecccccCCCCCceEEEEeC
Confidence            789999999999999992         146666654

>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B

Probab=97.50  E-value=0.00012  Score=50.74  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=30.5

Q ss_pred             CCCCCCCChhhHHHHHHHHHHhhcCchhHHHHhcc
Q psy16433         98 DIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKN  132 (297)
Q Consensus        98 ~~~f~~L~~~~Kl~ILk~Lce~~l~~~~vr~~ik~  132 (297)
                      ..+|.+|++..|+.||++||+|.+++..||+.|.+
T Consensus        11 ~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i~~   45 (50)
T PF15612_consen   11 TGEYYELSPEEKLEILRALCDQLLSSSSVRNEIEE   45 (50)
T ss_dssp             CSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            57899999999999999999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 38/235 (16%), Positives = 76/235 (32%), Gaps = 53/235 (22%)

Query: 92  ENPFDSDIDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQSA 151
           E+ F  + D + +    K  IL      + + D ++   K+  S +LRL      + +  
Sbjct: 26  EDAFVDNFDCKDVQDMPK-SILS-----KEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEM 78

Query: 152 FWYFYGTRLYREDYPKVVSQIVFQSITGPQVGIWTLFLKTVHTKKKKKRKLSALWKALKK 211
              F    L R +Y  ++S I  +    P   +  ++++              L+     
Sbjct: 79  VQKFVEEVL-RINYKFLMSPIKTEQR-QPS-MMTRMYIEQR----------DRLYND--- 122

Query: 212 KKEAPPKRGRKRIRPLDP-----SEEEPEFELDL----GAG-TWQV--VCYTEED----- 254
             +   K    R++P         E  P   + +    G+G TW    VC + +      
Sbjct: 123 -NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 255 ----WTKLAEA-TADAPCKEEKTLHHVLT------EDFLPEIPRLFEE-KRNLQR 297
               W  L    + +   +  + L + +        D    I       +  L+R
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 9e-04
 Identities = 35/209 (16%), Positives = 59/209 (28%), Gaps = 55/209 (26%)

Query: 18  SLFRAAFNLL-----DFDI-EELEEALLTDGTEDTGSSLLQELIVRLLCGCYGRNHGISI 71
           + +R  F+ L        I   L   +  D  +     ++ +L    L     +   ISI
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

Query: 72  FNYQMFLRR-------LFRTKCREYGRENPFDSD-------------------------- 98
            +  + L+        L R+    Y     FDSD                          
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 99  ---------IDFQFLPLRTKVEILQALCDFRLDADDVLDCLKNLESDSLRLQPLGYDRNQ 149
                    +DF+F  L  K+       +      + L  LK  +       P  Y+R  
Sbjct: 489 RMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK-YERLV 545

Query: 150 SAFWYF---YGTRLYREDYPKVVSQIVFQ 175
           +A   F       L    Y  ++ +I   
Sbjct: 546 NAILDFLPKIEENLICSKYTDLL-RIALM 573

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
2y9y_B	624	IOC3, ISWI one complex protein 3; transcription, n	98.74

>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B

Probab=98.74  E-value=5.9e-09  Score=102.57  Aligned_cols=146  Identities=19%  Similarity=0.244  Sum_probs=105.7

Q ss_pred             cHHHHHHHHHHHHhhc--CCCCCCHHHHHHHhccCCCC-------------C----------------chhhhHHHHHHH
Q psy16433          9 EVPSIAHFCSLFRAAF--NLLDFDIEELEEALLTDGTE-------------D----------------TGSSLLQELIVR   57 (297)
Q Consensus         9 e~a~I~~Fl~~F~~~l--~L~~f~~eeLE~aLl~p~~~-------------d----------------~~~~lL~~l~~~   57 (297)
                      .+++|+.|+..|..+|  .+..++++|||.+|.-+..+             +                .|+..+..|+++
T Consensus        56 DIifImsFinKF~~vf~~~l~nlgpQDfE~GL~L~p~~~~~~~~~~~~g~~~~~~~lY~d~~~~k~~~~~qD~MnlLf~~  135 (624)
T 2y9y_B           56 DIIKLMAFINKFSSFFHSDLQNLSFQDFEVGLDLYPGDPNGSAAGIVKGPEDTSLLLYPDFMAIKDIVYCQDKMNLLFLS  135 (624)
T ss_dssp             HHHHHHHHHHHTTTTSCTTTTTCCHHHHHHHHTCCSSCSSSSCSSEECSSSCCCEECHHHHSCSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhccCcccCcChHhhhccccCCCCccccccccccccccccchhhhcccccccccccchHHHHHHHHH
Confidence            4789999999999997  66899999999999854211             0                145688889999


Q ss_pred             HcccccC---------CCCccc---------cccHHHHHHHH---HHhh--hhhcC------------------------
Q psy16433         58 LLCGCYG---------RNHGIS---------IFNYQMFLRRL---FRTK--CREYG------------------------   90 (297)
Q Consensus        58 LL~~~~~---------~~r~i~---------~~~we~~L~~~---~~~~--~~e~~------------------------   90 (297)
                      ||..+++         +++.|+         ...|..++.+.   ...|  ..||.                        
T Consensus       136 LL~LvLN~~~~~~~~~rkkpv~s~~~l~~~~~k~y~KaI~eLr~~s~~wG~PkEWr~~~~~~~~~~~~~s~~f~~dd~~e  215 (624)
T 2y9y_B          136 LLDLTFTENFDGKSAKKKGPLTTWENLKSSSKKVFSNPLYRLRLVAREWGYPREWRQQLPSDQDISKPKTALFEQDEQTP  215 (624)
T ss_dssp             HHHHHTTTCSCCCSSCCCSCCCCHHHHTCSCSHHHHHHHHHHHHHTTTTCCCTTTEECCTTSSCCSSSCCCBSCSSCCCS
T ss_pred             HHHHHcCcccccccccccCcccccchhhhhhhhhHHHHHHHHHHhhhccCCChhhhcccccccccccccccccccccccc
Confidence            9988877         444444         23355666543   2233  12221                        


Q ss_pred             -------------------------CCCCCCCC----CCCCCCChhhHHHHHHHHHHhhcCc-hhHHHHhc--cCCCCcc
Q psy16433         91 -------------------------RENPFDSD----IDFQFLPLRTKVEILQALCDFRLDA-DDVLDCLK--NLESDSL  138 (297)
Q Consensus        91 -------------------------~~nPl~~~----~~f~~L~~~~Kl~ILk~Lce~~l~~-~~vr~~ik--~~d~~~l  138 (297)
                                               ..|||.+.    ..|..|.|.+||.+|++|++|.+.+ +.|...|-  .....+ 
T Consensus       216 ~VDP~~~EILt~~i~~w~~~~~~~~e~NPl~~~ele~~GllgL~P~DRLvLLRtLv~W~LS~S~~Ik~eI~~lsh~k~D-  294 (624)
T 2y9y_B          216 VVDPSHPEILTPNIYTWNANEPLPLESNPLYNREMDKNGILALKPMDRVVLLRALTDWCASHSSAIHDEIYKLTHGKKD-  294 (624)
T ss_dssp             CSCTTSCCCSCSCCBCCCCCEECCTTTCGGGCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCSSC-
T ss_pred             cCCCCchhhcccccccccccccccccCCCCcCccccccccccCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhccC-
Confidence                                     14888752    6899999999999999999999986 56666654  122111 


Q ss_pred             ccccccccCCCcEEEEEeC
Q psy16433        139 RLQPLGYDRNQSAFWYFYG  157 (297)
Q Consensus       139 R~ePlG~D~~g~~Yw~f~d  157 (297)
                        .|+|.|.....||++.|
T Consensus       295 --~p~G~dT~~a~r~lleG  311 (624)
T 2y9y_B          295 --PVFGIQTQQVPRYTIEG  311 (624)
T ss_dssp             --CTTCCCSCBCCSHHHHC
T ss_pred             --CCCCcccchhhHHHHhC
Confidence              69999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00