Psyllid ID: psy16498

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILNG
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEcccccccccccccccEEEEEEEccccccHHHHHHHHHHHHcccEEEEccccEEEEEEEEcccHHHHHHHHHccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
HHHcccccEEEEEccccccccccccHHHHccEEEEEEccccHHHHHHHHHHHHHccccEEEEEEccEEEEEcccccccccccHHHHHcccccccccEEEEcc
Coil and Loop (DISEMBL)
MNEWPGVRLRVIEgwdeeghhasdslhyegravdittsdrdsskyGLLARMAVEAGFDWVYyesrnhihcSVKTVLDMVGIASALWalgrgfppgvdfilng
Flexible Loop (DISEMBL)
MNEWPGVRLRVIEgwdeeghhasdslhyegravdittsdrdsskyGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALwalgrgfppgvdfilng
Low Complexity Region (SEG)
MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILNG
Disordered region (IsUnstruct)
*****GVRLRVIEGWDE********LHYEGRAVDIT******SKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFIL**
Disordered Region (DISOPRED)
*NEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVG**SALWALGRGFPPGVDFILN*
Disordered Region (DISEMBL)
MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILNG
Disordered Region (DISPRO)
*NEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVL******************GV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q91612	409	Indian hedgehog protein O	N/A	N/A	0.725	0.180	0.810	1e-34
Q92000	444	Sonic hedgehog protein OS	N/A	N/A	0.715	0.164	0.821	3e-34
Q61488	396	Desert hedgehog protein O	yes	N/A	0.725	0.186	0.864	2e-33
Q91035	425	Sonic hedgehog protein OS	yes	N/A	0.715	0.171	0.835	3e-33
Q15465	462	Sonic hedgehog protein OS	yes	N/A	0.715	0.158	0.835	3e-33
Q62226	437	Sonic hedgehog protein OS	no	N/A	0.715	0.167	0.835	3e-33
Q98938	408	Indian hedgehog protein O	no	N/A	0.725	0.181	0.810	4e-33
O43323	396	Desert hedgehog protein O	no	N/A	0.725	0.186	0.851	4e-33
P97812	411	Indian hedgehog protein O	no	N/A	0.931	0.231	0.663	5e-33
Q14623	411	Indian hedgehog protein O	no	N/A	0.931	0.231	0.663	5e-33

>sp|Q91612|IHH_XENLA Indian hedgehog protein OS=Xenopus laevis GN=ihh PE=2 SV=1

 Score =  144 bits (364), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 60/74 (81%), Positives = 69/74 (93%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH  +SLHYEGRAVDITTSDRD +KYG+LAR+AVEAGFDWV
Sbjct: 114 MNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWV 173

Query: 61  YYESRNHIHCSVKT 74
           YYES+ HIHCSVK+
Sbjct: 174 YYESKAHIHCSVKS 187

Signal involved in the early induction and patterning of anterodorsal ectoderm, nervous system and somites. Induces ectopic cement gland formation in embryos.
Xenopus laevis (taxid: 8355)

>sp|Q92000|SHH_XENLA Sonic hedgehog protein OS=Xenopus laevis GN=shh PE=2 SV=1

 Score =  143 bits (361), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/73 (82%), Positives = 67/73 (91%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH  +SLHYEGRAVDITTSDRD SKYG+L R+AVEAGFDWV
Sbjct: 115 MNQWPGVKLRVTEGWDEDGHHLEESLHYEGRAVDITTSDRDRSKYGMLGRLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 175 YYESKAHIHCSVK 187

Intercellular signal essential for a variety of patterning events during development and metamorphosis. Involved in limb formation, patterning of the central nervous system and ventral somite differentiation. Induces ectopic cement gland formation in embryos. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO.

Xenopus laevis (taxid: 8355)

>sp|Q61488|DHH_MOUSE Desert hedgehog protein OS=Mus musculus GN=Dhh PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 68/74 (91%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVKT 74
           YYESRNHIH SVK 
Sbjct: 175 YYESRNHIHVSVKA 188

Intercellular signal essential for a variety of patterning events during development. May function as a spermatocyte survival factor in the testes. Essential for testes development.

Mus musculus (taxid: 10090)

>sp|Q91035|SHH_CHICK Sonic hedgehog protein OS=Gallus gallus GN=SHH PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 117 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 176

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 177 YYESKAHIHCSVK 189

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Gallus gallus (taxid: 9031)

>sp|Q15465|SHH_HUMAN Sonic hedgehog protein OS=Homo sapiens GN=SHH PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 114 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 173

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 174 YYESKAHIHCSVK 186

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Homo sapiens (taxid: 9606)

>sp|Q62226|SHH_MOUSE Sonic hedgehog protein OS=Mus musculus GN=Shh PE=1 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 115 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 175 YYESKAHIHCSVK 187

Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. In the absence of SHH, PTC represses the constitutive signaling activity of SMO. Also regulates another target, the gli oncogene. Intercellular signal essential for a variety of patterning events during development: signal produced by the notochord that induces ventral cell fate in the neural tube and somites, and the polarizing signal for patterning of the anterior-posterior axis of the developing limb bud. Displays both floor plate- and motor neuron-inducing activity. The threshold concentration of N-product required for motor neuron induction is 5-fold lower than that required for floor plate induction.

Mus musculus (taxid: 10090)

>sp|Q98938|IHH_CHICK Indian hedgehog protein OS=Gallus gallus GN=IHH PE=2 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYG+LAR+AVEAGFDWV
Sbjct: 115 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVKT 74
           YYES+ HIHCSVK+
Sbjct: 175 YYESKAHIHCSVKS 188

Intercellular signal essential for a variety of patterning events during development. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. Implicated in endochondral ossification: may regulate the balance between growth and ossification of the developing bones. Induces the expression of parathyroid hormone-related protein (PTHRP).

Gallus gallus (taxid: 9031)

>sp|O43323|DHH_HUMAN Desert hedgehog protein OS=Homo sapiens GN=DHH PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 68/74 (91%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVKT 74
           YYESRNH+H SVK 
Sbjct: 175 YYESRNHVHVSVKA 188

Intercellular signal essential for a variety of patterning events during development. May function as a spermatocyte survival factor in the testes. Essential for testes development.

Homo sapiens (taxid: 9606)

>sp|P97812|IHH_MOUSE Indian hedgehog protein OS=Mus musculus GN=Ihh PE=1 SV=2

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 6/101 (5%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 119 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 178

Query: 61  YYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILN 101
           YYES+ H+HCSVK+        SA    G  FP G    L 
Sbjct: 179 YYESKAHVHCSVKSE------HSAAAKTGGCFPAGAQVRLE 213

Intercellular signal essential for a variety of patterning events during development. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. Implicated in endochondral ossification: may regulate the balance between growth and ossification of the developing bones. Induces the expression of parathyroid hormone-related protein (PTHRP).

Mus musculus (taxid: 10090)

>sp|Q14623|IHH_HUMAN Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 6/101 (5%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 119 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 178

Query: 61  YYESRNHIHCSVKTVLDMVGIASALWALGRGFPPGVDFILN 101
           YYES+ H+HCSVK+        SA    G  FP G    L 
Sbjct: 179 YYESKAHVHCSVKSE------HSAAAKTGGCFPAGAQVRLE 213

Intercellular signal essential for a variety of patterning events during development. Binds to the patched (PTC) receptor, which functions in association with smoothened (SMO), to activate the transcription of target genes. Implicated in endochondral ossification: may regulate the balance between growth and ossification of the developing bones. Induces the expression of parathyroid hormone-related protein (PTHRP).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
242003707	412	hypothetical protein, conserved [Pedicul	0.725	0.179	0.851	8e-35
344254289	4002	Histone-lysine N-methyltransferase MLL2	0.715	0.018	0.863	2e-34
345314388	572	PREDICTED: indian hedgehog protein-like,	0.872	0.155	0.694	3e-34
426228668	406	PREDICTED: sonic hedgehog protein [Ovis	0.715	0.179	0.849	6e-34
393894638	416	hedgehog, partial [Archegozetes longiset	0.686	0.168	0.871	2e-33
344298193	421	PREDICTED: sonic hedgehog protein-like [	0.715	0.173	0.835	2e-33
344255770	918	Indian hedgehog protein [Cricetulus gris	0.872	0.096	0.694	3e-33
444514922	1410	Solute carrier family 23 member 3 [Tupai	0.872	0.063	0.694	3e-33
301787303	315	PREDICTED: sonic hedgehog protein-like [	0.715	0.231	0.835	3e-33
147898419	409	indian hedgehog protein precursor [Xenop	0.725	0.180	0.810	6e-33

>gi|242003707|ref|XP_002422829.1| hypothetical protein, conserved [Pediculus humanus corporis] gi|212505699|gb|EEB10091.1| hypothetical protein, conserved [Pediculus humanus corporis]

 Score =  150 bits (380), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/74 (85%), Positives = 71/74 (95%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDEEGHHA+DSLHYEGRAVD+TTSDRD SKYG+LA++AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEEGHHAADSLHYEGRAVDVTTSDRDRSKYGMLAKLAVEAGFDWV 163

Query: 61  YYESRNHIHCSVKT 74
           YYESR HIHCSVK+
Sbjct: 164 YYESRAHIHCSVKS 177

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344254289|gb|EGW10393.1| Histone-lysine N-methyltransferase MLL2 [Cricetulus griseus]

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query: 61  YYESRNHIHCSVK 73
           YYESRNH+H SVK
Sbjct: 175 YYESRNHVHVSVK 187

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345314388|ref|XP_001514443.2| PREDICTED: indian hedgehog protein-like, partial [Ornithorhynchus anatinus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/95 (69%), Positives = 76/95 (80%), Gaps = 6/95 (6%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 332 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 391

Query: 61  YYESRNHIHCSVKTVLDMVGIASALWALGRGFPPG 95
           YYES+ H+HCSVK+        SA    G  FP G
Sbjct: 392 YYESKAHVHCSVKSE------HSAAAKTGGCFPAG 420

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426228668|ref|XP_004008418.1| PREDICTED: sonic hedgehog protein [Ovis aries]

 Score =  147 bits (372), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 62/73 (84%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 117 MNQWPGVKLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 176

Query: 61  YYESRNHIHCSVK 73
           YYESRNH+H SVK
Sbjct: 177 YYESRNHVHVSVK 189

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|393894638|gb|AFN26749.1| hedgehog, partial [Archegozetes longisetosus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/70 (87%), Positives = 66/70 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDEEGHHA DSLHYEGRAVDITTSDRD SKYG+LAR+AV+AGFDWV
Sbjct: 166 MNQWPGVKLRVTEGWDEEGHHAIDSLHYEGRAVDITTSDRDRSKYGMLARLAVKAGFDWV 225

Query: 61  YYESRNHIHC 70
           YYESR HIHC
Sbjct: 226 YYESRFHIHC 235

Source: Archegozetes longisetosus

Species: Archegozetes longisetosus

Genus: Archegozetes

Family: Trhypochthoniidae

Order: Oribatida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344298193|ref|XP_003420778.1| PREDICTED: sonic hedgehog protein-like [Loxodonta africana]

 Score =  145 bits (367), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 114 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 173

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 174 YYESKAHIHCSVK 186

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344255770|gb|EGW11874.1| Indian hedgehog protein [Cricetulus griseus]

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/95 (69%), Positives = 76/95 (80%), Gaps = 6/95 (6%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 626 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 685

Query: 61  YYESRNHIHCSVKTVLDMVGIASALWALGRGFPPG 95
           YYES+ H+HCSVK+        SA    G  FP G
Sbjct: 686 YYESKAHVHCSVKSE------HSAAAKTGGCFPAG 714

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444514922|gb|ELV10677.1| Solute carrier family 23 member 3 [Tupaia chinensis]

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/95 (69%), Positives = 76/95 (80%), Gaps = 6/95 (6%)

Query: 1    MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
            MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 1118 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 1177

Query: 61   YYESRNHIHCSVKTVLDMVGIASALWALGRGFPPG 95
            YYES+ H+HCSVK+        SA    G  FP G
Sbjct: 1178 YYESKAHVHCSVKSE------HSAAAKTGGCFPAG 1206

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301787303|ref|XP_002929067.1| PREDICTED: sonic hedgehog protein-like [Ailuropoda melanoleuca]

 Score =  145 bits (366), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 114 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 173

Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 174 YYESKAHIHCSVK 186

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|147898419|ref|NP_001079262.1| indian hedgehog protein precursor [Xenopus laevis] gi|6016351|sp|Q91612.1|IHH_XENLA RecName: Full=Indian hedgehog protein; Short=IHH; AltName: Full=Banded hedgehog protein; AltName: Full=X-BHH; Contains: RecName: Full=Indian hedgehog protein N-product; Contains: RecName: Full=Indian hedgehog protein C-product; Flags: Precursor gi|1147832|gb|AAA85165.1| banded hedgehog protein [Xenopus laevis]

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 60/74 (81%), Positives = 69/74 (93%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH  +SLHYEGRAVDITTSDRD +KYG+LAR+AVEAGFDWV
Sbjct: 114 MNQWPGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDRNKYGMLARLAVEAGFDWV 173

Query: 61  YYESRNHIHCSVKT 74
           YYES+ HIHCSVK+
Sbjct: 174 YYESKAHIHCSVKS 187

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|F8WEH4	123	SHH "Sonic hedgehog protein C-	0.941	0.780	0.701	2e-33
UNIPROTKB|E2QTF1	390	DHH "Uncharacterized protein"	0.892	0.233	0.718	6.7e-33
MGI|MGI:94891	396	Dhh "desert hedgehog" [Mus mus	0.715	0.184	0.876	6.7e-33
UNIPROTKB|G3V7Y0	396	Dhh "Hedgehog protein" [Rattus	0.715	0.184	0.876	6.7e-33
UNIPROTKB|F1MFP2	414	DHH "Hedgehog protein" [Bos ta	0.715	0.176	0.863	8.5e-33
UNIPROTKB|O43323	396	DHH "Desert hedgehog protein"	0.715	0.184	0.863	8.5e-33
UNIPROTKB|F1SJ10	400	DHH "Hedgehog protein" [Sus sc	0.715	0.182	0.863	8.5e-33
UNIPROTKB|F1NY81	358	SHH "Sonic hedgehog protein" [	0.715	0.203	0.835	1.4e-32
UNIPROTKB|F1P3J4	425	SHH "Hedgehog protein" [Gallus	0.715	0.171	0.835	1.4e-32
UNIPROTKB|Q91035	425	SHH "Sonic hedgehog protein" [	0.715	0.171	0.835	1.4e-32

UNIPROTKB|F8WEH4 SHH "Sonic hedgehog protein C-product" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 68/97 (70%), Positives = 77/97 (79%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct:    27 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 86

Query:    61 YYESRNHIHCSVKTVL-DMVGIASALWALGRGFPPGV 96
             YYES+ HIHCSVK V  D   + S   A G   P  V
Sbjct:    87 YYESKAHIHCSVKAVQSDFKSVESEPEAPGTAAPLAV 123

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|E2QTF1 DHH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 69/96 (71%), Positives = 75/96 (78%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query:    61 YYESRNHIHCSVKTVLDMVGI-----ASALWALGRG 91
             YYESRNH+H SVK      G      A+ LW   RG
Sbjct:   175 YYESRNHVHVSVKAGTVGGGCFRETEAAQLWGDARG 210

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

MGI|MGI:94891 Dhh "desert hedgehog" [Mus musculus (taxid:10090)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query:    61 YYESRNHIHCSVK 73
             YYESRNHIH SVK
Sbjct:   175 YYESRNHIHVSVK 187

GO:0005113 "patched binding" evidence=IPI

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007286 "spermatid development" evidence=IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0022402 "cell cycle process" evidence=IGI

GO:0030238 "male sex determination" evidence=IGI

GO:0033327 "Leydig cell differentiation" evidence=IGI;IMP

GO:0050810 "regulation of steroid biosynthetic process" evidence=IGI

UNIPROTKB|G3V7Y0 Dhh "Hedgehog protein" [Rattus norvegicus (taxid:10116)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 64/73 (87%), Positives = 68/73 (93%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query:    61 YYESRNHIHCSVK 73
             YYESRNHIH SVK
Sbjct:   175 YYESRNHIHVSVK 187

GO:0005113 "patched binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

UNIPROTKB|F1MFP2 DHH "Hedgehog protein" [Bos taurus (taxid:9913)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   119 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 178

Query:    61 YYESRNHIHCSVK 73
             YYESRNH+H SVK
Sbjct:   179 YYESRNHVHVSVK 191

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|O43323 DHH "Desert hedgehog protein" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   115 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 174

Query:    61 YYESRNHIHCSVK 73
             YYESRNH+H SVK
Sbjct:   175 YYESRNHVHVSVK 187

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1SJ10 DHH "Hedgehog protein" [Sus scrofa (taxid:9823)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 63/73 (86%), Positives = 68/73 (93%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct:   119 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 178

Query:    61 YYESRNHIHCSVK 73
             YYESRNH+H SVK
Sbjct:   179 YYESRNHVHVSVK 191

GO:0050810 "regulation of steroid biosynthetic process" evidence=IEA

GO:0033327 "Leydig cell differentiation" evidence=IEA

GO:0030238 "male sex determination" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

UNIPROTKB|F1NY81 SHH "Sonic hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct:   111 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 170

Query:    61 YYESRNHIHCSVK 73
             YYES+ HIHCSVK
Sbjct:   171 YYESKAHIHCSVK 183

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|F1P3J4 SHH "Hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct:   117 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 176

Query:    61 YYESRNHIHCSVK 73
             YYES+ HIHCSVK
Sbjct:   177 YYESKAHIHCSVK 189

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001569 "patterning of blood vessels" evidence=IEA

GO:0001570 "vasculogenesis" evidence=IEA

GO:0001658 "branching involved in ureteric bud morphogenesis" evidence=IEA

GO:0001708 "cell fate specification" evidence=IEA

GO:0001755 "neural crest cell migration" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0002076 "osteoblast development" evidence=IEA

GO:0002320 "lymphoid progenitor cell differentiation" evidence=IEA

GO:0003140 "determination of left/right asymmetry in lateral mesoderm" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005113 "patched binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005539 "glycosaminoglycan binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007228 "positive regulation of hh target transcription factor activity" evidence=IEA

GO:0007398 "ectoderm development" evidence=IEA

GO:0007405 "neuroblast proliferation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007442 "hindgut morphogenesis" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0008209 "androgen metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0014003 "oligodendrocyte development" evidence=IEA

GO:0014858 "positive regulation of skeletal muscle cell proliferation" evidence=IEA

GO:0014902 "myotube differentiation" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0021904 "dorsal/ventral neural tube patterning" evidence=IEA

GO:0021938 "smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation" evidence=IEA

GO:0021978 "telencephalon regionalization" evidence=IEA

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0030336 "negative regulation of cell migration" evidence=IEA

GO:0030539 "male genitalia development" evidence=IEA

GO:0030878 "thyroid gland development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0031012 "extracellular matrix" evidence=IEA

GO:0031016 "pancreas development" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0033089 "positive regulation of T cell differentiation in thymus" evidence=IEA

GO:0033092 "positive regulation of immature T cell proliferation in thymus" evidence=IEA

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0042130 "negative regulation of T cell proliferation" evidence=IEA

GO:0042307 "positive regulation of protein import into nucleus" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043010 "camera-type eye development" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043369 "CD4-positive or CD8-positive, alpha-beta T cell lineage commitment" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0045059 "positive thymic T cell selection" evidence=IEA

GO:0045060 "negative thymic T cell selection" evidence=IEA

GO:0045109 "intermediate filament organization" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045445 "myoblast differentiation" evidence=IEA

GO:0045880 "positive regulation of smoothened signaling pathway" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046638 "positive regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0046639 "negative regulation of alpha-beta T cell differentiation" evidence=IEA

GO:0048538 "thymus development" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0048643 "positive regulation of skeletal muscle tissue development" evidence=IEA

GO:0048645 "organ formation" evidence=IEA

GO:0048663 "neuron fate commitment" evidence=IEA

GO:0048706 "embryonic skeletal system development" evidence=IEA

GO:0048714 "positive regulation of oligodendrocyte differentiation" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0048859 "formation of anatomical boundary" evidence=IEA

GO:0048864 "stem cell development" evidence=IEA

GO:0051155 "positive regulation of striated muscle cell differentiation" evidence=IEA

GO:0051781 "positive regulation of cell division" evidence=IEA

GO:0060020 "Bergmann glial cell differentiation" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060174 "limb bud formation" evidence=IEA

GO:0060428 "lung epithelium development" evidence=IEA

GO:0060439 "trachea morphogenesis" evidence=IEA

GO:0060445 "branching involved in salivary gland morphogenesis" evidence=IEA

GO:0060447 "bud outgrowth involved in lung branching" evidence=IEA

GO:0060458 "right lung development" evidence=IEA

GO:0060459 "left lung development" evidence=IEA

GO:0060463 "lung lobe morphogenesis" evidence=IEA

GO:0060484 "lung-associated mesenchyme development" evidence=IEA

GO:0060516 "primary prostatic bud elongation" evidence=IEA

GO:0060523 "prostate epithelial cord elongation" evidence=IEA

GO:0060662 "salivary gland cavitation" evidence=IEA

GO:0060664 "epithelial cell proliferation involved in salivary gland morphogenesis" evidence=IEA

GO:0060685 "regulation of prostatic bud formation" evidence=IEA

GO:0060769 "positive regulation of epithelial cell proliferation involved in prostate gland development" evidence=IEA

GO:0060782 "regulation of mesenchymal cell proliferation involved in prostate gland development" evidence=IEA

GO:0060783 "mesenchymal smoothened signaling pathway involved in prostate gland development" evidence=IEA

GO:0060840 "artery development" evidence=IEA

GO:0060916 "mesenchymal cell proliferation involved in lung development" evidence=IEA

GO:0061053 "somite development" evidence=IEA

GO:0061189 "positive regulation of sclerotome development" evidence=IEA

GO:0071285 "cellular response to lithium ion" evidence=IEA

GO:0072136 "metanephric mesenchymal cell proliferation involved in metanephros development" evidence=IEA

GO:0080125 "multicellular structure septum development" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0090370 "negative regulation of cholesterol efflux" evidence=IEA

GO:2000062 "negative regulation of ureter smooth muscle cell differentiation" evidence=IEA

GO:2000063 "positive regulation of ureter smooth muscle cell differentiation" evidence=IEA

GO:2000357 "negative regulation of kidney smooth muscle cell differentiation" evidence=IEA

GO:2000358 "positive regulation of kidney smooth muscle cell differentiation" evidence=IEA

GO:2000729 "positive regulation of mesenchymal cell proliferation involved in ureter development" evidence=IEA

UNIPROTKB|Q91035 SHH "Sonic hedgehog protein" [Gallus gallus (taxid:9031)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 61/73 (83%), Positives = 69/73 (94%)

Query:     1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
             MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct:   117 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 176

Query:    61 YYESRNHIHCSVK 73
             YYES+ HIHCSVK
Sbjct:   177 YYESKAHIHCSVK 189

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0016539 "intein-mediated protein splicing" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005576 "extracellular region" evidence=NAS

GO:0009952 "anterior/posterior pattern specification" evidence=IDA

GO:0016015 "morphogen activity" evidence=NAS

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0009949 "polarity specification of anterior/posterior axis" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0030326 "embryonic limb morphogenesis" evidence=IDA

GO:0097190 "apoptotic signaling pathway" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29AA9	HH_DROPS	No assigned EC number	0.7142	0.6862	0.1455	yes	N/A
Q92008	SHH_DANRE	No assigned EC number	0.8219	0.7156	0.1746	yes	N/A
P79729	DHH_DANRE	No assigned EC number	0.7945	0.7156	0.8295	no	N/A
Q91035	SHH_CHICK	No assigned EC number	0.8356	0.7156	0.1717	yes	N/A
Q61488	DHH_MOUSE	No assigned EC number	0.8648	0.7254	0.1868	yes	N/A
Q15465	SHH_HUMAN	No assigned EC number	0.8356	0.7156	0.1580	yes	N/A
Q02936	HH_DROME	No assigned EC number	0.7428	0.6862	0.1486	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
pfam01085	160	pfam01085, HH_signal, Hedgehog amino-terminal sign	3e-48
pfam08291	110	pfam08291, Peptidase_M15_3, Peptidase M15	4e-05

>gnl|CDD|201590 pfam01085, HH_signal, Hedgehog amino-terminal signalling domain

 Score =  150 bits (380), Expect = 3e-48
 Identities = 59/71 (83%), Positives = 67/71 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 90  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 149

Query: 61  YYESRNHIHCS 71
           YYES+ HIHCS
Sbjct: 150 YYESKAHIHCS 160

For the carboxyl Hint module, see pfam01079. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. Length = 160

>gnl|CDD|116875 pfam08291, Peptidase_M15_3, Peptidase M15

 Score = 38.9 bits (91), Expect = 4e-05
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 22  ASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAG-FDWVYYESRNHIHCS 71
           A DS H  G A DIT S ++  +   LA++A   G F        + +H  
Sbjct: 63  ARDSQHLTGLAADITVSGKNPEE---LAQIARAHGPFGIGIGGHNSFVHVD 110

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF05951	152	Peptidase_M15_2: Bacterial protein of unknown func	99.88
PF01085	160	HH_signal: Hedgehog amino-terminal signalling doma	99.85
PF08291	110	Peptidase_M15_3: Peptidase M15 ; InterPro: IPR0132	99.82
COG3108	185	Uncharacterized protein conserved in bacteria [Fun	99.8
PF02557	132	VanY: D-alanyl-D-alanine carboxypeptidase; InterPr	97.28
PF13539	67	Peptidase_M15_4: D-alanyl-D-alanine carboxypeptida	96.27
PF06904	178	Extensin-like_C: Extensin-like protein C-terminus;	94.04
COG3921	300	Uncharacterized protein conserved in bacteria [Fun	92.3
PRK10178	184	D-alanyl-D-alanine dipeptidase; Provisional	89.47
COG1876	241	VanY D-alanyl-D-alanine carboxypeptidase [Cell env	81.53

>PF05951 Peptidase_M15_2: Bacterial protein of unknown function (DUF882); InterPro: IPR010275 This family consists of proteins related to metallopeptidases belong to MEROPS peptidase family M15A

Probab=99.88  E-value=6.2e-23  Score=150.49  Aligned_cols=66  Identities=27%  Similarity=0.434  Sum_probs=61.0

Q ss_pred             CeEEEeeeeCCCCCCC----------CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeE-EEcCCC--eEEEeec
Q psy16498          7 VRLRVIEGWDEEGHHA----------SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV-YYESRN--HIHCSVK   73 (102)
Q Consensus         7 ~Pi~VtSGYR~p~~N~----------~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v-~Y~~~~--fVHvdv~   73 (102)
                      .||.|+||||||++|+          ++|+||.|+|+||++++.+.   .+|.++|+.++.++| +||+++  |||||++
T Consensus        71 ~~i~iiSGYRsp~TN~~Lr~~~~gvA~~S~Hm~G~AiDi~ipgv~~---~~l~~~A~~l~~GGVG~Yp~s~~~FVHvDtG  147 (152)
T PF05951_consen   71 NPIQIISGYRSPETNAMLRRRSGGVAKNSLHMQGKAIDIRIPGVPL---RQLRRAALSLQRGGVGYYPRSGSKFVHVDTG  147 (152)
T ss_pred             CcEEEEeecCCHHHHHHHHhcCCCccccCccccceEEEEecCCCCH---HHHHHHHHHcCCCeEEeeCCCCCCEEEeCCC
Confidence            5899999999999995          99999999999999998774   588899999999999 999988  9999998


Q ss_pred             CC
Q psy16498         74 TV   75 (102)
Q Consensus        74 ~~   75 (102)
                      +.
T Consensus       148 ~v  149 (152)
T PF05951_consen  148 PV  149 (152)
T ss_pred             CC
Confidence            74

They are classed as non-peptidase homologues (M15A.UNA) and include A3D3U2 from SWISSPROT, where the metal ligands (marked by *) are conserved but the catalytic Asn has been replaced by Asp (+): 70 80 90 100 110 120 A3D3U2: QSKVLNDFNHLLRDHRQNVAAPMDKRLFDLLYSLKTTLNVDDEIHVISGYRSPKTNAMLA : .:. .:. : :.: ::.:: . :: . B1W1A6: PELNTCNSTWAGGKVAAGTARANALSSMWKLEALRHALG-DRSIRVTSGFRSASCNAAV- 20 30 40 50 60 70 * 130 * 140 150 160 170 * + A3D3U2: SNSGGVAKKSYHMRGMAMDIAIPSVKLKTLREAALSLKLGGV---GYYPNSGFVHVDCGP :: :..: :: : :.:.. .: :: . : . :. :: .. :::. :: B1W1A6: ---GG-ASNSRHMYGDAVDLGASPHSLCTLAKQARYHGFRGILGPGYVGHNDHVHVNQGP 80 90 100 110 120 B1W1A6 from SWISSPROT belongs to IPR013230 from INTERPRO, whcih contains peptidases belonging to the M15A family. The function of the proteins in this entry are not known.

>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH)

Probab=99.85  E-value=8.6e-22  Score=145.20  Aligned_cols=71  Identities=86%  Similarity=1.519  Sum_probs=61.0

Q ss_pred             CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEe
Q psy16498          1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCS   71 (102)
Q Consensus         1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvd   71 (102)
                      |+||+|+.|+|+.||....+.+++|+|++|||+||++++.+..++++|+++|.++|||||+|+++++||||
T Consensus        90 ~nqwpgvkLrV~eaWded~~h~~~sLHyeGRAvdittsd~d~~k~g~LarLAv~AGFDwV~Yes~~hiHcS  160 (160)
T PF01085_consen   90 MNQWPGVKLRVTEAWDEDGHHSPDSLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESRNHIHCS  160 (160)
T ss_dssp             HHHSTT--EEEEESS-SSSTSSTT-GGGGT-EEEEEETT--GGGHHHHHHHHHHTT-SEEEEEETTEEEEE
T ss_pred             HHhCCCcEEEEEecccCcccCCchhccccceeEEEEeccccchhhHHHHHHHhhcccCeEEecccceEecC
Confidence            68999999999999999989899999999999999999999999999999999999999999999999997

The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....

>PF08291 Peptidase_M15_3: Peptidase M15 ; InterPro: IPR013230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.82  E-value=6.3e-22  Score=136.68  Aligned_cols=67  Identities=27%  Similarity=0.398  Sum_probs=45.8

Q ss_pred             CCCCCCeEEEeeeeCCCCCCC-----CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeE-EEcCCCeEEEe
Q psy16498          2 NEWPGVRLRVIEGWDEEGHHA-----SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV-YYESRNHIHCS   71 (102)
Q Consensus         2 ~e~~G~Pi~VtSGYR~p~~N~-----~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v-~Y~~~~fVHvd   71 (102)
                      |+.+|.||+||||||||.+|+     ++|+|+.|+|+||.+++.+   ..+++++++++++.++ +|..++|||||
T Consensus        38 R~~~g~pi~ItSgyR~~~~N~~vGGa~~S~H~~G~A~Di~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~~vHid  110 (110)
T PF08291_consen   38 RDHFGKPIIITSGYRCPDHNRAVGGAPNSQHMKGRAADIVVSGMS---PEEVAQIARSAGFFGIGIYRYSGFVHID  110 (110)
T ss_dssp             HHHTTS---EEE----HHHHHHHT--TT-GGGGT-EEEE--TTT----HHHHHHHGGGTT-SEETSTT-SSSEEE-
T ss_pred             HHHHCCCeEEeeeecChhhchhhcCCCCCCCCCCEeEEEecCCCC---HHHHHHHHHHcCCCCeeeccCCCEEEeC
Confidence            567899999999999999997     9999999999999998764   4578899998888777 77778999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents the C-terminal domain of zinc D-Ala-D-Ala carboxypeptidases from Streptomyces species and non-peptidase homologues that belong to MEROPS peptidase family M15 (subfamily M15A, clan MD) [].; PDB: 1LBU_A.

>COG3108 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.80  E-value=4.8e-20  Score=138.72  Aligned_cols=70  Identities=26%  Similarity=0.314  Sum_probs=63.4

Q ss_pred             CeEEEeeeeCCCCCCC----------CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeE-EEcCCCeEEEeecCC
Q psy16498          7 VRLRVIEGWDEEGHHA----------SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV-YYESRNHIHCSVKTV   75 (102)
Q Consensus         7 ~Pi~VtSGYR~p~~N~----------~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v-~Y~~~~fVHvdv~~~   75 (102)
                      .||+|+||||+|++|+          +.|+||.|+|+||++++.+   +.+|.++++++.-++| +||.++|||+|++|.
T Consensus       103 ~~i~V~SGYRSPatNr~lr~~s~gvAk~S~Hm~g~AmD~~i~gV~---l~~lr~~~~~~~~GGVGyYp~s~sVH~DvGpv  179 (185)
T COG3108         103 RPVQVTSGYRSPATNRMLRSRSRGVAKKSLHMLGQAMDFQIPGVS---LWELRNAALSMQGGGVGYYPHSNSVHMDVGPV  179 (185)
T ss_pred             cceEEEeeccChhhhHHHHhhcccchhccccccceeeeeecCCcc---HHHHHHHHHhCcCCceeeccCCCceEeccCcc
Confidence            6999999999999997          9999999999999999876   5688899999988999 999999999999986


Q ss_pred             cccc
Q psy16498         76 LDMV   79 (102)
Q Consensus        76 ~~~~   79 (102)
                      .+=+
T Consensus       180 R~W~  183 (185)
T COG3108         180 RDWN  183 (185)
T ss_pred             ccCC
Confidence            5433

>PF02557 VanY: D-alanyl-D-alanine carboxypeptidase; InterPro: IPR003709 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=4.7e-05  Score=53.19  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CCeEEEeeeeCCCCCC-------------C---------CCCcCcceeEEEEEeCCC
Q psy16498          6 GVRLRVIEGWDEEGHH-------------A---------SDSLHYEGRAVDITTSDR   40 (102)
Q Consensus         6 G~Pi~VtSGYR~p~~N-------------~---------~~S~H~~GrAaDI~~~~~   40 (102)
                      |.+|.|+||||+.+..             .         -.|.|-.|.|+||...+.
T Consensus        23 G~~l~i~SgyRs~~~Q~~ly~~~~~~~~~~~~~~~~a~pG~SeH~~GlAiDi~~~~~   79 (132)
T PF02557_consen   23 GINLKITSGYRSYEEQQQLYDKYAQEYGKAGARVYVAPPGYSEHQTGLAIDIGIGDA   79 (132)
T ss_dssp             TTSEEEEE----HHHHHHHHHHHHCCCSCCCHHHHS--TTSSGGGGT-EEEEEEC-T
T ss_pred             CCCEEEEeecCCHHHHHHHHHHHHHhhhHhhhheecCCCCCCcccceeEEEeccCCC
Confidence            8899999999996531             1         589999999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These proteins are metallopeptidases belonging to MEROPS peptidase family M15 (clan MD), subfamily M15B (vanY D-Ala-D-Ala carboxypeptidase) and M15C (Ply, L-alanyl-D-glutamate peptidase). Acquired VanA- and VanB-type glycopeptide resistance in enterococci is due to synthesis of modified peptidoglycan precursors terminating in D-lactate. As opposed to VanA-type strains which are resistant to both vancomycin and teicoplanin, VanB-type strains remain teicoplanin susceptible []. The vanY gene was necessary for synthesis of the vancomycin-inducible D,D-carboxypeptidase 3.4.16.4 from EC activity previously proposed to be responsible for glycopeptide resistance. However, this activity was not required for peptidoglycan synthesis in the presence of glycopeptides []. Bacteriophage lysins (Ply) or endolysins are phage-encoded cell wall lytic enzymes which are synthesised late during virus multiplication and mediate the release of progeny virions. Bacteriophages of the pathogen Listeria monocytogenes encode endolysin enzymes which specifically hydrolyse the cross-linking peptide bridges in Listeria peptidoglycan. Ply118 is a 30.8kDa L-alanoyl-D-glutamate peptidase and Ply511 (36.5 kDa) acts as N-acetylmuramoyl-L-alanine amidase (IPR002502 from INTERPRO). ; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4F78_A 2VO9_C.

>PF13539 Peptidase_M15_4: D-alanyl-D-alanine carboxypeptidase

Probab=96.27  E-value=0.0045  Score=39.06  Aligned_cols=49  Identities=22%  Similarity=0.394  Sum_probs=31.9

Q ss_pred             CCCcCcceeEEEEEeCCC------------CcchHHHHHHHHHHcCCCeE-EEcCCCeEEEe
Q psy16498         23 SDSLHYEGRAVDITTSDR------------DSSKYGLLARMAVEAGFDWV-YYESRNHIHCS   71 (102)
Q Consensus        23 ~~S~H~~GrAaDI~~~~~------------~~~~~~~L~~~A~~~gFd~v-~Y~~~~fVHvd   71 (102)
                      ..|.|..|.|+||.....            ......+++++++++||.|= -+...++.|.+
T Consensus         5 ~~S~H~~G~AiDin~~~np~~~~~~~~~~~~~~~~~~~~~~~~~~G~~WGG~W~~~D~~HFe   66 (67)
T PF13539_consen    5 KLSNHSYGLAIDINPDENPYIQWNGDVDGYKIADYKEVVAIFEKLGFRWGGDWKFKDYMHFE   66 (67)
T ss_pred             cccccccEEEEEEccccCCeeeeCCccchhhhhhHHHHHHHHHhCCCEeCCCCCCCCCcCCc
Confidence            479999999999983211            12345567777778888554 22345666654

>PF06904 Extensin-like_C: Extensin-like protein C-terminus; InterPro: IPR009683 This entry represents the C terminus (approx

Probab=94.04  E-value=0.15  Score=38.43  Aligned_cols=67  Identities=19%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             eEEEeeeeCCCCCCC----CCCcCcceeEEEEE---eCC---------CC-cchHHHHHHHHH---HcCCCeEEEcC---
Q psy16498          8 RLRVIEGWDEEGHHA----SDSLHYEGRAVDIT---TSD---------RD-SSKYGLLARMAV---EAGFDWVYYES---   64 (102)
Q Consensus         8 Pi~VtSGYR~p~~N~----~~S~H~~GrAaDI~---~~~---------~~-~~~~~~L~~~A~---~~gFd~v~Y~~---   64 (102)
                      .|...++|-|..-|.    +-|.|-.|.|+||.   +.+         .. ...-.++++.+.   +.-|+-|+-|.   
T Consensus        78 ~I~~~gsY~CR~~n~~~~~rlSEHA~gnAiDI~gf~ladG~~i~V~~~w~~~~~~~~fl~~v~~~AC~~F~tVLgP~~na  157 (178)
T PF06904_consen   78 RIEHAGSYACRNRNGRAGGRLSEHARGNAIDIAGFRLADGRRISVLRDWRGGGPEAAFLRAVRAGACGRFGTVLGPDYNA  157 (178)
T ss_pred             EEeeccceecCCcCCCCCCCcCccccccceeeeeeEecCCCEEEecCCCCCCchHHHHHHHHHHHHHhcCCcccCCCCch
Confidence            478889999999775    88999999999994   221         11 111122223222   44588885443   


Q ss_pred             --CCeEEEeecC
Q psy16498         65 --RNHIHCSVKT   74 (102)
Q Consensus        65 --~~fVHvdv~~   74 (102)
                        .+++|+|+..
T Consensus       158 aH~dHfHlD~~~  169 (178)
T PF06904_consen  158 AHADHFHLDMAR  169 (178)
T ss_pred             hHhhcccccccc
Confidence              5899999963

120 residues) of a number of bacterial extensin-like proteins. Extensins are cell wall glycoproteins normally associated with plants, where they strengthen the cell wall in response to mechanical stress []. Many proteins in this entry are hypothetical.

>COG3921 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.30  E-value=0.089  Score=42.71  Aligned_cols=68  Identities=25%  Similarity=0.326  Sum_probs=45.5

Q ss_pred             eEEEeeeeCCCCCCC----CCCcCcceeEEEEE---eCCC----------CcchHHHHHHHH---HHcCCCeEEEcC---
Q psy16498          8 RLRVIEGWDEEGHHA----SDSLHYEGRAVDIT---TSDR----------DSSKYGLLARMA---VEAGFDWVYYES---   64 (102)
Q Consensus         8 Pi~VtSGYR~p~~N~----~~S~H~~GrAaDI~---~~~~----------~~~~~~~L~~~A---~~~gFd~v~Y~~---   64 (102)
                      .|.=.|+|=|...|.    +-|.|-.|.|+||.   +++.          ....=+.+++..   -+.=|.-|+-|.   
T Consensus       200 ~I~~~g~Y~CR~~n~r~~gk~SEHA~gNAlDIssf~LsdGk~i~v~~~~~~~~~eg~flraVr~aaC~yF~TVLGPg~da  279 (300)
T COG3921         200 RIEHAGGYSCRNRNSRRDGKISEHARGNALDISSFTLSDGKKIEVRSRGEGAFREGAFLRAVRAAACLYFNTVLGPGSDA  279 (300)
T ss_pred             eeeccccceeecccCCCCCccchhhcccceeeeeEEecCCcEEEeecCCCCcccchHHHHHHHHHHHHHhhcccCCCCCh
Confidence            466679999999885    88999999999994   3321          111111233332   255688885554   


Q ss_pred             --CCeEEEeecCC
Q psy16498         65 --RNHIHCSVKTV   75 (102)
Q Consensus        65 --~~fVHvdv~~~   75 (102)
                        .++.|+|++..
T Consensus       280 aH~dHfHlDl~~r  292 (300)
T COG3921         280 AHADHFHLDLRTR  292 (300)
T ss_pred             hhhhhceecchhc
Confidence              58999999864

>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional

Probab=89.47  E-value=0.22  Score=37.80  Aligned_cols=35  Identities=29%  Similarity=0.524  Sum_probs=28.0

Q ss_pred             CCCeEEEeeeeCCCCCCC----------------CCCcCcceeEEEEEeCC
Q psy16498          5 PGVRLRVIEGWDEEGHHA----------------SDSLHYEGRAVDITTSD   39 (102)
Q Consensus         5 ~G~Pi~VtSGYR~p~~N~----------------~~S~H~~GrAaDI~~~~   39 (102)
                      .|-.|+|-.|||+...-.                +.|.|..|.|+|+++-+
T Consensus        60 ~G~~L~I~D~yRP~~aq~~~w~~~~~~~yVA~p~~~S~HsrG~AVDLTL~d  110 (184)
T PRK10178         60 AGLTLRIYDAYRPQQAQQVLWDACPDPQYVADLGRGSNHSRGTAIDLTLVD  110 (184)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHhCCCcCeeeCCCCCCCCCCceEEEEEEEC
Confidence            378899999999954221                45999999999999865

>COG1876 VanY D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]

Probab=81.53  E-value=0.68  Score=36.35  Aligned_cols=31  Identities=32%  Similarity=0.355  Sum_probs=25.6

Q ss_pred             CCeEEEeeeeCCCCCC--------------------C--CCCcCcceeEEEEE
Q psy16498          6 GVRLRVIEGWDEEGHH--------------------A--SDSLHYEGRAVDIT   36 (102)
Q Consensus         6 G~Pi~VtSGYR~p~~N--------------------~--~~S~H~~GrAaDI~   36 (102)
                      |+-|.+.||||+-...                    +  ..|.|-.|.|+||.
T Consensus       119 g~~l~~~S~yrs~~~q~~lf~~~v~~~~~~~~~~~sa~pg~SeH~tG~A~Di~  171 (241)
T COG1876         119 GVALLRWSAYRSYSRQHWLFDNDVFDPGLLPAATYSALPGWSEHQTGLAIDIS  171 (241)
T ss_pred             CcEEeeeecchhHHHHHhhhhhhhcCchhhhhhhhccCCCccccccceeEeec
Confidence            6678999999994421                    0  89999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3n1r_A	160	Crystal Structure Of Shhn Length = 160		3e-34
1vhh_A	162	A Potential Catalytic Site Within The Amino-Termina		3e-34
2wg4_A	155	Crystal Structure Of The Complex Between Human Hedg		3e-34
3ho5_H	169	Crystal Structure Of Hedgehog-interacting Protein (		3e-34
2wfx_A	152	Crystal Structure Of The Complex Between Human Hedg		3e-34
3m1n_A	175	Crystal Structure Of Human Sonic Hedgehog N-Termina		3e-34
2wfq_A	165	Crystal Structure Of The N-terminal Signalling Doma		4e-34
2wg3_A	164	Crystal Structure Of The Complex Between Human Hedg		4e-34
3d1m_A	168	Crystal Structure Of Sonic Hedgehog Bound To The Th		4e-34
3n1g_B	170	Crystal Structure Of Dhhn Bound To Bocfn3 Length =		5e-34
3k7j_B	187	Crystal Structure Of The D100e Mutant Of The Indian		5e-34
3k7h_B	187	Crystal Structure Of The E95k Mutant Of The Indian		5e-34
3k7g_B	187	Crystal Structure Of The Indian Hedgehog N-Terminal		6e-34
3n1f_A	169	Crystal Structure Of Ihhn Bound To Cdofn3 Length =		6e-34
3k7i_B	187	Crystal Structure Of The E131k Mutant Of The Indian		1e-33
2ibg_E	150	Crystal Structure Of Hedgehog Bound To The Fniii Do		8e-29

>pdb|3N1R|A Chain A, Crystal Structure Of Shhn Length = 160

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 80  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 139
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 140 YYESKAHIHCSVK 152

>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal Signalling Domain Of Sonic Hedgehog Length = 162

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 82  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 141
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 142 YYESKAHIHCSVK 154

>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog Without Calcium Length = 155

Iteration: 1
 Score =  140 bits (352), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 135
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 136 YYESKAHIHCSVK 148

>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip) And Sonic Hedgehog (shh) Complex Length = 169

Iteration: 1
 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 86  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 145
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 146 YYESKAHIHCSVK 158

>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Sonic Hedgehog In The Presence Of Calcium Length = 152

Iteration: 1
 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 135
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 136 YYESKAHIHCSVK 148

>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal Domain Length = 175

Iteration: 1
 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 92  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 151
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 152 YYESKAHIHCSVK 164

>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of Human Dhh Without Calcium Length = 165

Iteration: 1
 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 77  MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 136
Query: 61  YYESRNHIHCSVKT 74
           YYESRNH+H SVK 
Sbjct: 137 YYESRNHVHVSVKA 150

>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog- Interacting Protein Hip And Desert Hedgehog Without Calcium Length = 164

Iteration: 1
 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 77  MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 136
Query: 61  YYESRNHIHCSVKT 74
           YYESRNH+H SVK 
Sbjct: 137 YYESRNHVHVSVKA 150

>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third Fniii Domain Of Cdo Length = 168

Iteration: 1
 Score =  139 bits (350), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 94  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 153
Query: 61  YYESRNHIHCSVK 73
           YYES+ HIHCSVK
Sbjct: 154 YYESKAHIHCSVK 166

>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3 Length = 170

Iteration: 1
 Score =  139 bits (350), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 96  MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 155
Query: 61  YYESRNHIHCSVKT 74
           YYESRNH+H SVK 
Sbjct: 156 YYESRNHVHVSVKA 169

>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187

Iteration: 1
 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177

>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187

Iteration: 1
 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177

>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal Signalling Domain Length = 187

Iteration: 1
 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177

>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3 Length = 169

Iteration: 1
 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 95  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 154
Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 155 YYESKAHVHCSVKS 168

>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian Hedgehog N- Terminal Signalling Domain Length = 187

Iteration: 1
 Score =  137 bits (345), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 70/74 (94%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV +GWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177

>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains Of Ihog Length = 150

Iteration: 1
 Score =  122 bits (305), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%)
Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MNEWPG+RL V E WDE+ HH  +SLHYEGRAV I TSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76  MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWV 135
Query: 61  YYESRNHIHCSVKT 74
            Y SR HI+CSVK+
Sbjct: 136 SYVSRRHIYCSVKS 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3n1g_B	170	Desert hedgehog protein; binding sites, calcium, c	2e-44
2ibg_E	150	Protein hedgehog, GH03927P; IHOG, fibronectin type	3e-43
3k7i_B	187	IHH, HHG-2, indian hedgehog protein; alpha+beta sa	1e-41

>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B Length = 170

 Score =  141 bits (355), Expect = 2e-44
 Identities = 63/74 (85%), Positives = 68/74 (91%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 96  MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 155

Query: 61  YYESRNHIHCSVKT 74
           YYESRNH+H SVK 
Sbjct: 156 YYESRNHVHVSVKA 169

>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2 Length = 150

 Score =  137 bits (345), Expect = 3e-43
 Identities = 55/74 (74%), Positives = 62/74 (83%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MNEWPG+RL V E WDE+ HH  +SLHYEGRAV I TSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76  MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWV 135

Query: 61  YYESRNHIHCSVKT 74
            Y SR HI+CSVK+
Sbjct: 136 SYVSRRHIYCSVKS 149

>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A* Length = 187

 Score =  134 bits (338), Expect = 1e-41
 Identities = 59/74 (79%), Positives = 70/74 (94%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV +GWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163

Query: 61  YYESRNHIHCSVKT 74
           YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
3n1g_B	170	Desert hedgehog protein; binding sites, calcium, c	99.96
3k7i_B	187	IHH, HHG-2, indian hedgehog protein; alpha+beta sa	99.94
2ibg_E	150	Protein hedgehog, GH03927P; IHOG, fibronectin type	99.9
1lbu_A	213	Muramoyl-pentapeptide carboxypeptidase; hydrolase,	99.75
1xp2_A	179	EAD500, PLY500, L-alanyl-D-glutamate peptidase; hy	97.76
2vo9_A	179	EAD500, L-alanyl-D-glutamate peptidase; cell WALL	97.56
4f78_A	255	D,D-dipeptidase/D,D-carboxypeptidase; center for s	95.16

>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B

Probab=99.96  E-value=1.4e-29  Score=187.33  Aligned_cols=74  Identities=84%  Similarity=1.419  Sum_probs=70.2

Q ss_pred             CCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCC
Q psy16498          2 NEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTV   75 (102)
Q Consensus         2 ~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~   75 (102)
                      ++|.|+||+||||||||++|+++|+||+|+||||++++.+..++++|+++|+++|||||+|++++||||||+++
T Consensus        97 ~~~~g~pi~V~SGYRsp~~Na~~SlH~~GrAaDI~~~~~~~~k~~~La~~A~~~gfd~V~Y~~~~fVHvsvk~~  170 (170)
T 3n1g_B           97 NMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHVHVSVKAD  170 (170)
T ss_dssp             HHSTTCCEEEEESSCCSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEECCCSSCEEEECCCC
T ss_pred             cccCCCcEEEEecccCccccCCcCchheeEEEEEEeCCccHHHHHHHHHHHHHCCCCEEEeCCCCEEEEEEeCC
Confidence            46789999999999999999999999999999999999998889899999999999999999999999999875

>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*

Probab=99.94  E-value=1.5e-27  Score=178.12  Aligned_cols=79  Identities=75%  Similarity=1.360  Sum_probs=75.8

Q ss_pred             CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCCcccc
Q psy16498          1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMV   79 (102)
Q Consensus         1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~~~~~   79 (102)
                      |+||+|+||+||+||||+.+|.++|+|++||||||++++++..++++|+++|+++|||||+|+.++|||++|+++..+.
T Consensus       104 ~nqwpGvkLRVtegwde~~hh~~~SLHyEGRAvDIttsdrd~~k~g~LarLAveAGFDwV~Y~sr~~IH~SVk~d~~~~  182 (187)
T 3k7i_B          104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAA  182 (187)
T ss_dssp             HHHSTTCCEEEEECCCSSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCCSSSCC
T ss_pred             HHhcCCceEEEeecccCCCCCCcccccccceeeEEEecccchhHHHHHHHHHHHcCCCEEEeccCCeEEEEeccchhhh
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999987765

>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2

Probab=99.90  E-value=2.8e-24  Score=156.35  Aligned_cols=75  Identities=73%  Similarity=1.241  Sum_probs=71.8

Q ss_pred             CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCC
Q psy16498          1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTV   75 (102)
Q Consensus         1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~   75 (102)
                      |+||+|++|+|++||+++.+-.++|+|++|||+||++++++..++++|+++|.++|||||+|+.+++|||||+++
T Consensus        76 ~~~w~gv~lrVteawd~~~~~~~~SLHyeGRAvdit~sd~d~~k~g~La~lAv~aGFDwV~y~~~~~ih~SV~~d  150 (150)
T 2ibg_E           76 MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSD  150 (150)
T ss_dssp             HHHSTTCCEEEEESSCSSCCSCSCCGGGGTCEEEEEETTCCGGGHHHHHHHHHHHTCSEEECCCSSCEEEECCCC
T ss_pred             HHHcCCceEEEEEcccCCCCCCCccccccceeEEEEecCCChHHHHHHHHHHHHcCCCEEEeCCCCEEEEEEecC
Confidence            578999999999999999988899999999999999999999999999999999999999999999999999975

>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1

Probab=99.75  E-value=1.2e-19  Score=133.95  Aligned_cols=70  Identities=23%  Similarity=0.279  Sum_probs=60.8

Q ss_pred             CCC-CeEEEeeeeCCCCCCC-----CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEE----EcCCCeEEEeec
Q psy16498          4 WPG-VRLRVIEGWDEEGHHA-----SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVY----YESRNHIHCSVK   73 (102)
Q Consensus         4 ~~G-~Pi~VtSGYR~p~~N~-----~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~----Y~~~~fVHvdv~   73 (102)
                      .+| .||.|+||||||.+|+     ++|+||.|+|+||.+++..   ..+|+++|+.++|++|+    |++++|||||++
T Consensus       125 ~~g~~~i~V~sgyR~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~---~~~l~~~~~~~~~~gvg~~~~~~~~~fvH~d~~  201 (213)
T 1lbu_A          125 AMGDKPITVNGGFRSVTCNSNVGGASNSRHMYGHAADLGAGSQG---FCALAQAARNHGFTEILGPGYPGHNDHTHVAGG  201 (213)
T ss_dssp             HTTSCCCCEEECCCCHHHHHHHTCCTTCGGGGTCEEEECCTTTC---HHHHHHHGGGTTCSEEECTTSTTCSSSEEEECS
T ss_pred             hcCCCCeEeccccCCHHHccccCCCCCCCCCCceEeeeCCCCcC---HHHHHHHHHHCCCCeEecCCcCCCCCeEEeCCC
Confidence            345 7999999999999996     8999999999999997654   56888999999999998    566689999999


Q ss_pred             CCc
Q psy16498         74 TVL   76 (102)
Q Consensus        74 ~~~   76 (102)
                      +..
T Consensus       202 ~~r  204 (213)
T 1lbu_A          202 DGR  204 (213)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            743

>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5

Probab=97.56  E-value=0.00014  Score=52.98  Aligned_cols=68  Identities=24%  Similarity=0.391  Sum_probs=47.7

Q ss_pred             CCeEEEeeeeCCCCC-----------------CC--CCCcCcceeEEEEEeCCC---------CcchHHHHHHHHHHcCC
Q psy16498          6 GVRLRVIEGWDEEGH-----------------HA--SDSLHYEGRAVDITTSDR---------DSSKYGLLARMAVEAGF   57 (102)
Q Consensus         6 G~Pi~VtSGYR~p~~-----------------N~--~~S~H~~GrAaDI~~~~~---------~~~~~~~L~~~A~~~gF   57 (102)
                      |.+|.|+||||+.+.                 |+  ..|.|..|.|+||.....         ......++.++++++||
T Consensus        52 Gi~l~i~sgyRs~~~Q~~Ly~~~~~~~g~~~~~a~pg~S~H~~G~AvD~~~~~~dg~~~~~~~~~~~~~~~~~~a~~~G~  131 (179)
T 2vo9_A           52 GIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGF  131 (179)
T ss_dssp             TCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEEECCHHHHHHHHHHhcccCCCceecCCCCCCCCCCcccccccceecCCcccccCcchHHHHHHHHHHHHcCC
Confidence            889999999999442                 22  479999999999975321         12334567788889998


Q ss_pred             CeE-EE-cCCCeEEEeec
Q psy16498         58 DWV-YY-ESRNHIHCSVK   73 (102)
Q Consensus        58 d~v-~Y-~~~~fVHvdv~   73 (102)
                      .|= -. ..+++-|..+.
T Consensus       132 ~WGG~W~~f~D~pHFEL~  149 (179)
T 2vo9_A          132 KWGGDWKSFKDYPHFELC  149 (179)
T ss_dssp             EEGGGSSSSCCTTEEESS
T ss_pred             eecCcCCCCCCCceEeec
Confidence            542 11 12578899875

>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}

Probab=95.16  E-value=0.0062  Score=46.88  Aligned_cols=33  Identities=24%  Similarity=0.388  Sum_probs=26.8

Q ss_pred             CCeEEEeeeeCCCCCC--------------------C--CCCcCcceeEEEEEeC
Q psy16498          6 GVRLRVIEGWDEEGHH--------------------A--SDSLHYEGRAVDITTS   38 (102)
Q Consensus         6 G~Pi~VtSGYR~p~~N--------------------~--~~S~H~~GrAaDI~~~   38 (102)
                      |..|.|+||||+.+..                    +  -.|.|-.|.|+||...
T Consensus        65 g~~L~i~SgYRS~~~Q~~L~~~~~~~~G~~~a~~~~A~PG~SeH~tGlAvDi~~~  119 (255)
T 4f78_A           65 GNSIVPVSGYRSLEEQTAIYDGSLKDNGEDFTRKYVALPNHSEHQTGLAIDLGLN  119 (255)
T ss_dssp             TTSEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHSCCTTSCGGGGTCEEEEEES
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHHhcchhhhhheecCCCCCCccceEEEEeccC
Confidence            5689999999995522                    1  5699999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d3d1ma1	148	d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus mus	2e-51
d1lbua2	130	d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-ter	3e-04

>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]} Length = 148

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  156 bits (397), Expect = 2e-51
 Identities = 61/74 (82%), Positives = 69/74 (93%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 75  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 134

Query: 61  YYESRNHIHCSVKT 74
           YYES+ HIHCSVK 
Sbjct: 135 YYESKAHIHCSVKA 148

>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]} Length = 130

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Muramoyl-pentapeptide carboxypeptidase
domain: Zn2+ DD-carboxypeptidase C-terminal catalytic domain
species: Streptomyces albus G [TaxId: 1962]

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 15  WDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV----YYESRNHIHC 70
            +     AS+S H  G A D+    +       LA+ A   GF  +    Y    +H H 
Sbjct: 59  CNSNVGGASNSRHMYGHAADLGAGSQGFCA---LAQAARNHGFTEILGPGYPGHNDHTHV 115

Query: 71  SVKTV 75
           +    
Sbjct: 116 AGGDG 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d3d1ma1	148	Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090	99.88
d1lbua2	130	Zn2+ DD-carboxypeptidase C-terminal catalytic doma	99.86
d2vo9a1	148	L-alanyl-D-glutamate peptidase Ply {Listeria phage	97.71

>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Hedgehog (development protein), N-terminal signaling domain
domain: Sonic hedgehog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.3e-23  Score=148.94  Aligned_cols=74  Identities=82%  Similarity=1.480  Sum_probs=71.4

Q ss_pred             CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecC
Q psy16498          1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKT   74 (102)
Q Consensus         1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~   74 (102)
                      |+||+|+.|+||.||....+.+++|+|++|||+||+.++++..+++.|+++|.++|||||+|+++++|||||++
T Consensus        75 mn~w~gvkLrV~eaWde~~~h~~~SLHyEGRAvdittsd~d~sk~~~Larlav~AGFDWV~Yesr~hIh~SVks  148 (148)
T d3d1ma1          75 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAHIHCSVKA  148 (148)
T ss_dssp             HHHSTTCCEEEEESSCCSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCC
T ss_pred             HHhCCCceEEEEeeeccCCCcCcccccccceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCceEEEEecC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999974

>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal catalytic domain {Streptomyces albus G [TaxId: 1962]}

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: Muramoyl-pentapeptide carboxypeptidase
domain: Zn2+ DD-carboxypeptidase C-terminal catalytic domain
species: Streptomyces albus G [TaxId: 1962]

Probab=99.86  E-value=3.6e-24  Score=149.47  Aligned_cols=70  Identities=24%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             CCCCC-CeEEEeeeeCCCCCCC-----CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeE----EEcCCCeEEEe
Q psy16498          2 NEWPG-VRLRVIEGWDEEGHHA-----SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV----YYESRNHIHCS   71 (102)
Q Consensus         2 ~e~~G-~Pi~VtSGYR~p~~N~-----~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v----~Y~~~~fVHvd   71 (102)
                      |+.+| +||+||||||||++|+     ++|+|+.|+|+||.+++.+.   .+++++|+++||+++    +|++++|||||
T Consensus        40 R~~~G~~Pi~ItSgYRsp~~N~~vgga~~S~H~~G~A~Di~v~g~~~---~~~~~~a~~~gf~~~~g~G~~~~~~fvHvD  116 (130)
T d1lbua2          40 RHAMGDKPITVNGGFRSVTCNSNVGGASNSRHMYGHAADLGAGSQGF---CALAQAARNHGFTEILGPGYPGHNDHTHVA  116 (130)
T ss_dssp             HHHTTSCCCCEEECCCCHHHHHHHTCCTTCGGGGTCEEEECCTTTCH---HHHHHHGGGTTCSEEECTTSTTCSSSEEEE
T ss_pred             HHHhCCCcEEEEEEEeCHHHHHHhccCCCCcccCceEEEEecCCCCH---HHHHHHHHHcCCCccceeeeCCCCCEEEEC
Confidence            34455 8999999999999996     99999999999999987664   478899999999987    36778999999


Q ss_pred             ecC
Q psy16498         72 VKT   74 (102)
Q Consensus        72 v~~   74 (102)
                      +++
T Consensus       117 ~~~  119 (130)
T d1lbua2         117 GGD  119 (130)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            986

>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply {Listeria phage A500 [TaxId: 40522]}

class: Alpha and beta proteins (a+b)
fold: Hedgehog/DD-peptidase
superfamily: Hedgehog/DD-peptidase
family: VanY-like
domain: L-alanyl-D-glutamate peptidase Ply
species: Listeria phage A500 [TaxId: 40522]

Probab=97.71  E-value=7.3e-06  Score=56.15  Aligned_cols=68  Identities=24%  Similarity=0.392  Sum_probs=48.6

Q ss_pred             CCeEEEeeeeCCCCCC-----------------C--CCCcCcceeEEEEEeCC---------CCcchHHHHHHHHHHcCC
Q psy16498          6 GVRLRVIEGWDEEGHH-----------------A--SDSLHYEGRAVDITTSD---------RDSSKYGLLARMAVEAGF   57 (102)
Q Consensus         6 G~Pi~VtSGYR~p~~N-----------------~--~~S~H~~GrAaDI~~~~---------~~~~~~~~L~~~A~~~gF   57 (102)
                      |..|.|+||||+.+..                 +  ..|.|..|.|+||....         .....+..+.+.+.+.||
T Consensus        40 G~~l~i~~gyRs~~~Q~~l~~~g~~~~g~~~~~a~pg~S~H~~G~AiDi~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Gf  119 (148)
T d2vo9a1          40 GIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGF  119 (148)
T ss_dssp             TCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTTC
T ss_pred             CCeEEEEecccCHHHHHHHHHhhcccCCCceecCCCCCCcCCCcccccccccccCCcccccCcccHHHHHHHHHHHhcCC
Confidence            7889999999994421                 1  56999999999997532         123446678888889998


Q ss_pred             CeE--EEcCCCeEEEeec
Q psy16498         58 DWV--YYESRNHIHCSVK   73 (102)
Q Consensus        58 d~v--~Y~~~~fVHvdv~   73 (102)
                      .|=  -..-+++-|+.+.
T Consensus       120 ~WGG~w~~~~D~pHfel~  137 (148)
T d2vo9a1         120 KWGGDWKSFKDYPHFELC  137 (148)
T ss_dssp             EEGGGSSSSCCTTEEESS
T ss_pred             EEcccCCCCCCCCcEecc
Confidence            653  1123588899875