Psyllid ID: psy1649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MNGSSAGSPSCSIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQNANDNSR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHcHcccccccccccccccccEEcccccEEEEccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mngssagspscsipdwnePKLLASLLALGFLDVMVVVGNslsnpifcwlpffslyllggfypdiipktIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCfcaqntnlrhntsskrrfrrdsnqsqvskrtnrspsynyndnsplnytqhqhsdsdqnandnsr
Flexible Loop (DISEMBL)
mngssagspscsipdWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFcaqntnlrhntsskrrfrrdsnqsqvskrtnrspsynyNDNSPLNytqhqhsdsdqnandnsr
Low Complexity Region (SEG)
MNGSSAGSPSCSIPDWNEPKllasllalgflDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQNANDNSR
Disordered region (IsUnstruct)
**************DWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTN*********************************************************
Disordered Region (DISOPRED)
********************************VMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCA*************************************************************
Disordered Region (DISEMBL)
***********SIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTNLRH************************PSYNYNDNSPLNYT****************
Disordered Region (DISPRO)
***********************SLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQN***********RFRRDSNQSQVSKR**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGSSAGSPSCSIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQNANDNSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q93126	476	Probable G-protein couple	N/A	N/A	0.541	0.193	0.509	7e-23
O77408	638	Octopamine receptor 1 OS=	N/A	N/A	0.441	0.117	0.545	2e-19
Q8JG69	415	Alpha-2Db adrenergic rece	no	N/A	0.476	0.195	0.453	1e-14
Q90WY5	510	Alpha-2B adrenergic recep	no	N/A	0.358	0.119	0.523	4e-14
Q90WY6	432	Alpha-2C adrenergic recep	no	N/A	0.358	0.141	0.523	2e-13
Q60475	448	Alpha-2B adrenergic recep	yes	N/A	0.358	0.136	0.476	2e-13
P18089	450	Alpha-2B adrenergic recep	yes	N/A	0.358	0.135	0.476	3e-13
P30545	450	Alpha-2B adrenergic recep	yes	N/A	0.358	0.135	0.476	4e-13
P19328	453	Alpha-2B adrenergic recep	yes	N/A	0.358	0.134	0.476	5e-13
P08913	450	Alpha-2A adrenergic recep	no	N/A	0.352	0.133	0.508	6e-13

>sp|Q93126|GPR9_BALAM Probable G-protein coupled receptor No9 OS=Balanus amphitrite PE=3 SV=1

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 10/102 (9%)

Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           VG  +   I CWLPFF  YL+ GF  D +P  +F+V FWLGYCNSAVNP +YAL S+DFR
Sbjct: 376 VGIIVGLFILCWLPFFVCYLVRGFCADCVPPLLFSVFFWLGYCNSAVNPCVYALCSRDFR 435

Query: 97  FAFKKIICKCFCAQNTNLRHNTSSKRRFRRD---SNQSQVSK 135
           FAF  I+CKC C +        + +RRFRR     N+SQ  +
Sbjct: 436 FAFSSILCKCVCRRG-------AMERRFRRTLLVGNRSQTEE 470

Orphan G-protein coupled receptor.
Balanus amphitrite (taxid: 32267)

>sp|O77408|OAR1_LYMST Octopamine receptor 1 OS=Lymnaea stagnalis PE=1 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 58/77 (75%), Gaps = 2/77 (2%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII- 103
           I CW+PFF++YL+G F  + I   +F+V FWLGYCNSA+NP +YALFS+DFRFAF+K++ 
Sbjct: 529 IMCWMPFFTIYLVGAFCENCISPIVFSVAFWLGYCNSAMNPCVYALFSRDFRFAFRKLLT 588

Query: 104 CKCFC-AQNTNLRHNTS 119
           C C   ++N + R  TS
Sbjct: 589 CSCKAWSKNRSFRPQTS 605

G-protein coupled receptor for octopamine (OA), which is a neurotransmitter, neurohormone, and neuromodulator in invertebrates. Activation of this receptor by octopamine induces an increase in both inositol phosphates and cyclic AMP. The coupling to adenylyl cyclase seems to be less efficient than the coupling to phospholipase C. The rank order of potency for agonists is p-synephrine >= clonidine > p-octopamine = xylometazoline = phenylephrine = oxymetazoline > B-HT920 > serotonin = p-tyramine > epinephrine > norepinephrine > methoxamine = dopamine = histamine. For antagonists, the rank order is yohimbine > chlopromazine / spiperone > phentolamine > mianserine > rauwolscine > prazosin > alprenolol / propanolol > pindolol.

Lymnaea stagnalis (taxid: 6523)

>sp|Q8JG69|AA2DB_DANRE Alpha-2Db adrenergic receptor OS=Danio rerio GN=adra2db PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 22  LASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYC 79
           LA +    F  V+ VV       + CW PFF  Y L         IP ++FN+ FW+GYC
Sbjct: 328 LAQMREKRFTFVLAVVMGVF---VLCWFPFFFTYSLHAICRKSCTIPDSLFNLFFWIGYC 384

Query: 80  NSAVNPLIYALFSKDFRFAFKKIICK 105
           NS+VNP+IY +F++DFR AFKKI+C+
Sbjct: 385 NSSVNPIIYTIFNRDFRKAFKKIMCR 410

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The order of potency for this receptor is dexmedetomidine > norepinephrine = epinephrine > oxymetazoline.

Danio rerio (taxid: 7955)

>sp|Q90WY5|ADA2B_DANRE Alpha-2B adrenergic receptor OS=Danio rerio GN=adra2b PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y L    P+   +P+ +F   FW+GYCNS +NP+IY +F+KDFR AFKKI
Sbjct: 441 VICWFPFFFSYSLQAVCPESCALPEPLFKFFFWIGYCNSCLNPVIYTIFNKDFRRAFKKI 500

Query: 103 ICK 105
           +CK
Sbjct: 501 LCK 503

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The order of potency for this receptor is norepinephrine > epinephrine.

Danio rerio (taxid: 7955)

>sp|Q90WY6|ADA2C_DANRE Alpha-2C adrenergic receptor OS=Danio rerio GN=adra2c PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGF--YPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y L G    P  IP  +F   FW+GYCNS++NP+IY +F++DFR AF+KI
Sbjct: 364 VVCWFPFFFSYSLYGICREPCAIPDPLFKFFFWIGYCNSSLNPVIYTIFNQDFRRAFQKI 423

Query: 103 ICK 105
           +CK
Sbjct: 424 LCK 426

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The order of potency for this receptor is dexmedetomidine > norepinephrine > epinephrine.

Danio rerio (taxid: 7955)

>sp|Q60475|ADA2B_CAVPO Alpha-2B adrenergic receptor OS=Cavia porcellus GN=ADRA2B PE=3 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct: 379 VLCWFPFFFTYSLGAICPQHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRI 438

Query: 103 ICK 105
           +C+
Sbjct: 439 LCR 441

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins.

Cavia porcellus (taxid: 10141)

>sp|P18089|ADA2B_HUMAN Alpha-2B adrenergic receptor OS=Homo sapiens GN=ADRA2B PE=1 SV=2

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct: 381 VLCWFPFFFSYSLGAICPKHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRI 440

Query: 103 ICK 105
           +C+
Sbjct: 441 LCR 443

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The rank order of potency for agonists of this receptor is clonidine > norepinephrine > epinephrine = oxymetazoline > dopamine > p-tyramine = phenylephrine > serotonin > p-synephrine / p-octopamine. For antagonists, the rank order is yohimbine > chlorpromazine > phentolamine > mianserine > spiperone > prazosin > alprenolol > propanolol > pindolol.

Homo sapiens (taxid: 9606)

>sp|P30545|ADA2B_MOUSE Alpha-2B adrenergic receptor OS=Mus musculus GN=Adra2b PE=1 SV=2

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct: 381 VVCWFPFFFSYSLGAICPQHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRI 440

Query: 103 ICK 105
           +C+
Sbjct: 441 LCR 443

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins.

Mus musculus (taxid: 10090)

>sp|P19328|ADA2B_RAT Alpha-2B adrenergic receptor OS=Rattus norvegicus GN=Adra2b PE=2 SV=2

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct: 384 VVCWFPFFFSYSLGAICPQHCKVPHGLFQFFFWIGYCNSSLNPVIYTVFNQDFRRAFRRI 443

Query: 103 ICK 105
           +C+
Sbjct: 444 LCR 446

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins.

Rattus norvegicus (taxid: 10116)

>sp|P08913|ADA2A_HUMAN Alpha-2A adrenergic receptor OS=Homo sapiens GN=ADRA2A PE=1 SV=3

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           + CW PFF  Y L      + P+T+F   FW GYCNS++NP+IY +F+ DFR AFKKI+C
Sbjct: 384 VVCWFPFFFTYTLTAVGCSV-PRTLFKFFFWFGYCNSSLNPVIYTIFNHDFRRAFKKILC 442

Query: 105 K 105
           +
Sbjct: 443 R 443

Alpha-2 adrenergic receptors mediate the catecholamine-induced inhibition of adenylate cyclase through the action of G proteins. The rank order of potency for agonists of this receptor is oxymetazoline > clonidine > epinephrine > norepinephrine > phenylephrine > dopamine > p-synephrine > p-tyramine > serotonin = p-octopamine. For antagonists, the rank order is yohimbine > phentolamine = mianserine > chlorpromazine = spiperone = prazosin > propanolol > alprenolol = pindolol.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
350426094	544	PREDICTED: probable G-protein coupled re	0.635	0.198	0.511	9e-29
340725786	544	PREDICTED: probable G-protein coupled re	0.635	0.198	0.511	9e-29
383851784	588	PREDICTED: probable G-protein coupled re	0.652	0.188	0.524	1e-28
345495284	535	PREDICTED: probable G-protein coupled re	0.664	0.211	0.508	1e-27
58585080	587	octopamine receptor [Apis mellifera] gi|	0.535	0.155	0.59	2e-27
380024044	593	PREDICTED: LOW QUALITY PROTEIN: probable	0.535	0.153	0.59	3e-27
307170675	536	Probable G-protein coupled receptor No9	0.688	0.218	0.477	5e-27
30016935	139	octopamine receptor [Apis mellifera]	0.588	0.719	0.550	7e-27
307198167	542	Probable G-protein coupled receptor No9	0.570	0.178	0.547	9e-27
33089868	628	octopamine receptor [Periplaneta america	0.694	0.187	0.515	3e-26

>gi|350426094|ref|XP_003494332.1| PREDICTED: probable G-protein coupled receptor No9-like [Bombus impatiens]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 21/129 (16%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFK+IIC
Sbjct: 424 ILCWLPFFTMYLVRAFCPNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKRIIC 483

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNY-----------NDNSPLNY 153
           KCFC +  N           RR S+ SQ++ R +RSPSY+            +D  P + 
Sbjct: 484 KCFCKRRANT---------LRRGSDGSQLATRNDRSPSYSMQVPQQGVSIDDSDQDPSSE 534

Query: 154 -TQHQHSDS 161
            T H HS+S
Sbjct: 535 PTVHSHSES 543

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725786|ref|XP_003401247.1| PREDICTED: probable G-protein coupled receptor No9-like [Bombus terrestris]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 21/129 (16%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFK+IIC
Sbjct: 424 ILCWLPFFTMYLVRAFCPNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKRIIC 483

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNY-----------NDNSPLNY 153
           KCFC +  N           RR S+ SQ++ R +RSPSY+            +D  P + 
Sbjct: 484 KCFCKRRANT---------LRRGSDGSQLATRNDRSPSYSMQVPQQGVSIDDSDQDPSSE 534

Query: 154 -TQHQHSDS 161
            T H HS+S
Sbjct: 535 PTVHSHSES 543

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851784|ref|XP_003701411.1| PREDICTED: probable G-protein coupled receptor No9-like [Megachile rotundata]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 80/122 (65%), Gaps = 11/122 (9%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFK+IIC
Sbjct: 468 ILCWLPFFTMYLVRAFCPNCINSTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKRIIC 527

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQN 164
           KCFC +  N           RR S+ SQ++ R +RSPSY+     P        SD D N
Sbjct: 528 KCFCKRRANT---------LRRGSDGSQLTTRNDRSPSYSI--RVPQQGVSIDDSDPDPN 576

Query: 165 AN 166
           + 
Sbjct: 577 SE 578

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495284|ref|XP_003427475.1| PREDICTED: probable G-protein coupled receptor No9 [Nasonia vitripennis]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/124 (50%), Positives = 77/124 (62%), Gaps = 11/124 (8%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFKKIIC
Sbjct: 415 ILCWLPFFTMYLVRAFCPNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKKIIC 474

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQN 164
            CFC Q  N           RR S+ SQ++ R  RSP        P      + SD D  
Sbjct: 475 NCFCKQRANT---------LRRGSDGSQLTTRNERSP--GRARCGPSQGLSIEDSDPDHG 523

Query: 165 ANDN 168
           ++ N
Sbjct: 524 SDAN 527

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58585080|ref|NP_001011565.1| octopamine receptor [Apis mellifera] gi|37987893|emb|CAD67999.1| octopamine receptor [Apis mellifera]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 9/100 (9%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F  + I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFK IIC
Sbjct: 467 ILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIIC 526

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYN 144
           KCFC + TN           RR S+ SQ++ R +RSPSY+
Sbjct: 527 KCFCKRRTNT---------LRRGSDGSQLAMRNDRSPSYS 557

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024044|ref|XP_003695817.1| PREDICTED: LOW QUALITY PROTEIN: probable G-protein coupled receptor No9-like [Apis florea]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 9/100 (9%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F  + I  T+F+V+FWLGYCNSA+NP IYALFSKDFRFAFK IIC
Sbjct: 473 ILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIIC 532

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYN 144
           KCFC + TN           RR S+ SQ++ R +RSPSY+
Sbjct: 533 KCFCKRRTNT---------LRRGSDGSQLAIRNDRSPSYS 563

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170675|gb|EFN62843.1| Probable G-protein coupled receptor No9 [Camponotus floridanus]

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 19/136 (13%)

Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +   I CWLPFF++YL+  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFR
Sbjct: 408 LGIIVGGFIMCWLPFFTMYLVRAFCPNHIHPTVFSVLFWLGYCNSAINPCIYALFSKDFR 467

Query: 97  FAFKKII-CKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSY---------NYN 146
           FAFK+II CKC C Q  N           RR S+ SQ++ R+ RSPSY         + +
Sbjct: 468 FAFKRIICCKCSCIQRVN---------TLRRGSDGSQLAMRSERSPSYSIRGAQHGISID 518

Query: 147 DNSPLNYTQHQHSDSD 162
           D+ P   ++  HS S+
Sbjct: 519 DSDPDPASEPTHSQSE 534

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|30016935|gb|AAO92605.1| octopamine receptor [Apis mellifera]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 76/109 (69%), Gaps = 9/109 (8%)

Query: 36  VVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDF 95
            +G  +   I CWLPFF++YL+  F  + I  T+F+V+FWLGYCNSA+NP IYALFSKDF
Sbjct: 10  TLGIIVGGFILCWLPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDF 69

Query: 96  RFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYN 144
           RFAFK IICKCFC + TN           RR S+ SQ++ R +RSPSY+
Sbjct: 70  RFAFKSIICKCFCKRRTNT---------LRRGSDGSQLAMRNDRSPSYS 109

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198167|gb|EFN79188.1| Probable G-protein coupled receptor No9 [Harpegnathos saltator]

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 9/106 (8%)

Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +   I CWLPFF++Y++  F P+ I  T+F+V+FWLGYCNSA+NP IYALFSKDFR
Sbjct: 415 LGIIVGGFIMCWLPFFTMYVVRAFCPNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFR 474

Query: 97  FAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPS 142
           FAFK+IICKCFC +  N           RR S+ SQ++ R  RSPS
Sbjct: 475 FAFKRIICKCFCKRRANT---------LRRGSDGSQLAVRNERSPS 511

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33089868|gb|AAP93817.1| octopamine receptor [Periplaneta americana]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 82/132 (62%), Gaps = 14/132 (10%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CWLPFF++YL+  F  D I   +F+V+FWLGYCNSA+NP IYALFSKDFRFAFK+IIC
Sbjct: 501 IVCWLPFFTMYLVRAFCEDCIHHLLFSVLFWLGYCNSAINPCIYALFSKDFRFAFKRIIC 560

Query: 105 KCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRT-------NRSPSYNYNDNSPLNYTQHQ 157
           +CFCA+   ++  T    R RR S+ SQ+  R         RSPS N     P N     
Sbjct: 561 RCFCAR--KIKKETRDWAR-RRGSDGSQLGARGPEPGSERGRSPSNNNTQQYPHNSVGE- 616

Query: 158 HSDSDQNANDNS 169
             DSDQ  ND S
Sbjct: 617 --DSDQ-GNDGS 625

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
FB|FBgn0024944	645	Oamb "Octopamine receptor in m	0.623	0.164	0.491	2.4e-27
WB|WBGene00001052	460	dop-1 [Caenorhabditis elegans	0.741	0.273	0.363	7.6e-16
ZFIN|ZDB-GENE-021010-1	388	adra2a "adrenergic, alpha-2A-,	0.358	0.157	0.491	2.1e-15
ZFIN|ZDB-GENE-021010-5	415	adra2db "adrenergic, alpha-2D-	0.358	0.146	0.523	3.4e-15
ZFIN|ZDB-GENE-021010-2	510	adra2b "adrenergic, alpha-2B-,	0.358	0.119	0.523	3.4e-15
UNIPROTKB|E7EW16	427	ADRA1A "Alpha-1A adrenergic re	0.417	0.166	0.418	1.3e-14
ZFIN|ZDB-GENE-021010-3	432	adra2c "adrenergic, alpha-2C-,	0.358	0.141	0.523	1.3e-14
UNIPROTKB|P35348	466	ADRA1A "Alpha-1A adrenergic re	0.417	0.152	0.418	1.6e-14
UNIPROTKB|F1Q1Q4	444	ADRA2B "Uncharacterized protei	0.358	0.137	0.476	2.4e-14
UNIPROTKB|Q38PT0	446	ADRA2B "Uncharacterized protei	0.358	0.136	0.476	2.4e-14

FB|FBgn0024944 Oamb "Octopamine receptor in mushroom bodies" [Drosophila melanogaster (taxid:7227)]

 Score = 295 (108.9 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
 Identities = 57/116 (49%), Positives = 85/116 (73%)

Query:    45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
             IFCW PFF++Y++  F  D +   +F+V+FWLGYCNSAVNP+IYALFSKDFRFAFK+IIC
Sbjct:   529 IFCWCPFFTMYIIRPFCQDCVDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIIC 588

Query:   105 KCFCA-QNTNLRHNTSSKRRFRRDSNQSQVSKRT-NRSPS---YNYNDNSPLNYTQ 155
             +CFC+ Q+ +L+   SS+R    D +  ++  RT + +PS   +++ D S L++++
Sbjct:   589 RCFCSRQSVSLK---SSRRG--SDMSAIRIRARTPSITPSAAAHSFGDESELHHSE 639

GO:0004989 "octopamine receptor activity" evidence=IDA;NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008227 "G-protein coupled amine receptor activity" evidence=ISS

GO:0007211 "octopamine or tyramine signaling pathway" evidence=ISS

GO:0030728 "ovulation" evidence=IMP

GO:0051482 "elevation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0060278 "regulation of ovulation" evidence=IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0007612 "learning" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

WB|WBGene00001052 dop-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 205 (77.2 bits), Expect = 7.6e-16, P = 7.6e-16
 Identities = 48/132 (36%), Positives = 77/132 (58%)

Query:    35 VVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIP-KTIFNVMFWLGYCNSAVNPLIYALFSK 93
             + +G  +   + CWLPFF++ +L  + P+I   KTI  V  WLGY NS+ NPLIY++F++
Sbjct:   327 LTLGVIMGTFLVCWLPFFTVNILRAWLPEIFSSKTIMAVT-WLGYANSSANPLIYSIFNR 385

Query:    94 DFRFAFKKIICKCF--CAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYND-NSP 150
             DFR AFKKII + F  C +  +L  + SS+     +  + +   R++ S   N ND N+ 
Sbjct:   386 DFRRAFKKIIVRVFGCCWEEPDLNKSISSRYAAPDNIERRRSCTRSSESAHDNNNDANAT 445

Query:   151 -LNYTQHQHSDS 161
              LN   + + ++
Sbjct:   446 RLNLLSNNNEET 457

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0032094 "response to food" evidence=IGI

GO:0040012 "regulation of locomotion" evidence=IGI

GO:0007212 "dopamine receptor signaling pathway" evidence=IGI

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IDA

GO:0046959 "habituation" evidence=IMP

GO:0007638 "mechanosensory behavior" evidence=IMP

GO:0001588 "dopamine neurotransmitter receptor activity, coupled via Gs" evidence=IDA

GO:0051379 "epinephrine binding" evidence=IDA

GO:0051380 "norepinephrine binding" evidence=IDA

ZFIN|ZDB-GENE-021010-1 adra2a "adrenergic, alpha-2A-, receptor" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 2.1e-15, P = 2.1e-15
 Identities = 30/61 (49%), Positives = 42/61 (68%)

Query:    45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
             + CW PFF  Y    F    +P+T+F   FW GYCNS++NP+IY +F+ DFR +FKKI+C
Sbjct:   321 VICWFPFFFTYTFTAFCDCCVPETLFKFFFWFGYCNSSLNPIIYTIFNNDFRRSFKKILC 380

Query:   105 K 105
             +
Sbjct:   381 R 381

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004938 "alpha2-adrenergic receptor activity" evidence=ISS;IDA

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-021010-5 adra2db "adrenergic, alpha-2D-, receptor b" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query:    45 IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             + CW PFF  Y L         IP ++FN+ FW+GYCNS+VNP+IY +F++DFR AFKKI
Sbjct:   348 VLCWFPFFFTYSLHAICRKSCTIPDSLFNLFFWIGYCNSSVNPIIYTIFNRDFRKAFKKI 407

Query:   103 ICK 105
             +C+
Sbjct:   408 MCR 410

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0004938 "alpha2-adrenergic receptor activity" evidence=IEA;ISS;IDA

GO:0005887 "integral to plasma membrane" evidence=IC;ISS

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

ZFIN|ZDB-GENE-021010-2 adra2b "adrenergic, alpha-2B-, receptor" [Danio rerio (taxid:7955)]

 Score = 200 (75.5 bits), Expect = 3.4e-15, P = 3.4e-15
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    45 IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             + CW PFF  Y L    P+   +P+ +F   FW+GYCNS +NP+IY +F+KDFR AFKKI
Sbjct:   441 VICWFPFFFSYSLQAVCPESCALPEPLFKFFFWIGYCNSCLNPVIYTIFNKDFRRAFKKI 500

Query:   103 ICK 105
             +CK
Sbjct:   501 LCK 503

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA

GO:0004938 "alpha2-adrenergic receptor activity" evidence=IDA

GO:0004936 "alpha-adrenergic receptor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|E7EW16 ADRA1A "Alpha-1A adrenergic receptor" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 31/74 (41%), Positives = 52/74 (70%)

Query:    45 IFCWLPFFSLYLLGGFYPDIIP-KTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
             + CWLPFF +  +G F+PD  P +T+F ++FWLGY NS +NP+IY   S++F+ AF+ ++
Sbjct:   282 VLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVL 341

Query:   104 -CKCFCAQNTNLRH 116
               +C C + ++ +H
Sbjct:   342 RIQCLCRKQSS-KH 354

GO:0004937 "alpha1-adrenergic receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-021010-3 adra2c "adrenergic, alpha-2C-, receptor" [Danio rerio (taxid:7955)]

 Score = 193 (73.0 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 33/63 (52%), Positives = 44/63 (69%)

Query:    45 IFCWLPFFSLYLLGGFY--PDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             + CW PFF  Y L G    P  IP  +F   FW+GYCNS++NP+IY +F++DFR AF+KI
Sbjct:   364 VVCWFPFFFSYSLYGICREPCAIPDPLFKFFFWIGYCNSSLNPVIYTIFNQDFRRAFQKI 423

Query:   103 ICK 105
             +CK
Sbjct:   424 LCK 426

GO:0004938 "alpha2-adrenergic receptor activity" evidence=IEA;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0071875 "adrenergic receptor signaling pathway" evidence=IEA

GO:0004935 "adrenergic receptor activity" evidence=IEA

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISS

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|P35348 ADRA1A "Alpha-1A adrenergic receptor" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 31/74 (41%), Positives = 52/74 (70%)

Query:    45 IFCWLPFFSLYLLGGFYPDIIP-KTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
             + CWLPFF +  +G F+PD  P +T+F ++FWLGY NS +NP+IY   S++F+ AF+ ++
Sbjct:   282 VLCWLPFFLVMPIGSFFPDFKPSETVFKIVFWLGYLNSCINPIIYPCSSQEFKKAFQNVL 341

Query:   104 -CKCFCAQNTNLRH 116
               +C C + ++ +H
Sbjct:   342 RIQCLCRKQSS-KH 354

GO:0001985 "negative regulation of heart rate involved in baroreceptor response to increased systemic arterial blood pressure" evidence=IEA

GO:0001994 "norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure" evidence=IEA

GO:0001996 "positive regulation of heart rate by epinephrine-norepinephrine" evidence=IEA

GO:0001997 "positive regulation of the force of heart contraction by epinephrine-norepinephrine" evidence=IEA

GO:0003084 "positive regulation of systemic arterial blood pressure" evidence=IEA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0016049 "cell growth" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0035265 "organ growth" evidence=IEA

GO:0045987 "positive regulation of smooth muscle contraction" evidence=IEA

GO:0060073 "micturition" evidence=IEA

GO:0097195 "pilomotor reflex" evidence=IEA

GO:0004937 "alpha1-adrenergic receptor activity" evidence=ISS;NAS;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IDA

GO:0006939 "smooth muscle contraction" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0090037 "positive regulation of protein kinase C signaling cascade" evidence=ISS

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=ISS

GO:0060452 "positive regulation of cardiac muscle contraction" evidence=ISS

GO:0060402 "calcium ion transport into cytosol" evidence=ISS

GO:0045907 "positive regulation of vasoconstriction" evidence=ISS

GO:0045760 "positive regulation of action potential" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

GO:0035024 "negative regulation of Rho protein signal transduction" evidence=ISS

GO:0032229 "negative regulation of synaptic transmission, GABAergic" evidence=ISS

GO:0009725 "response to hormone stimulus" evidence=ISS

GO:0007568 "aging" evidence=ISS

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISS

GO:0007202 "activation of phospholipase C activity" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

UNIPROTKB|F1Q1Q4 ADRA2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query:    45 IFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct:   375 VLCWFPFFFSYSLGAICPQHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRI 434

Query:   103 ICK 105
             +C+
Sbjct:   435 LCR 437

GO:0005886 "plasma membrane" evidence=IEA

GO:0071883 "activation of MAPK activity by adrenergic receptor signaling pathway" evidence=IEA

GO:0051379 "epinephrine binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0035625 "epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0004938 "alpha2-adrenergic receptor activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0000165 "MAPK cascade" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q38PT0 ADRA2B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query:    45 IFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             + CW PFF  Y LG   P    +P  +F   FW+GYCNS++NP+IY +F++DFR AF++I
Sbjct:   377 VLCWFPFFFSYSLGAICPQHCKVPHGLFQFFFWIGYCNSSLNPVIYTIFNQDFRRAFRRI 436

Query:   103 ICK 105
             +C+
Sbjct:   437 LCR 439

GO:0071883 "activation of MAPK activity by adrenergic receptor signaling pathway" evidence=IEA

GO:0051379 "epinephrine binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0035625 "epidermal growth factor-activated receptor transactivation by G-protein coupled receptor signaling pathway" evidence=IEA

GO:0032148 "activation of protein kinase B activity" evidence=IEA

GO:0004938 "alpha2-adrenergic receptor activity" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0000165 "MAPK cascade" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	2e-07

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMF---WLGYCNSAVNPLIY 88
           + CWLP+  + LL    P  I + +   +    WL Y NS +NP+IY
Sbjct: 205 VLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG4219|consensus	423		99.84
PHA03234	338	DNA packaging protein UL33; Provisional	99.78
PHA03235	409	DNA packaging protein UL33; Provisional	99.77
KOG4220|consensus	503		99.75
PHA02834	323	chemokine receptor-like protein; Provisional	99.68
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.66
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.56
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.28
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.83
KOG2087|consensus	363		98.75
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	97.96
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.55
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	97.54
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.04
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	96.47
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.89
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	95.86
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	95.39
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	95.33
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	94.61
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	93.26
KOG2575|consensus	510		89.13
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	88.62
KOG4564|consensus	473		87.27
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	86.84
KOG4193|consensus	610		85.11
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	84.42

>KOG4219|consensus

Probab=99.84  E-value=1e-20  Score=149.66  Aligned_cols=87  Identities=22%  Similarity=0.515  Sum_probs=75.8

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK  101 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~  101 (170)
                      ..+.++|++||+++||++|.|||+|||++.++....++    .....++....|||++|+|+||+||+++|++||.+|++
T Consensus       252 ~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~  331 (423)
T KOG4219|consen  252 QLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRR  331 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhh
Confidence            44556789999999999999999999999999876533    45568899999999999999999999999999999999


Q ss_pred             HHHhhhccCCC
Q psy1649         102 IICKCFCAQNT  112 (170)
Q Consensus       102 ~~~~~~~~~~~  112 (170)
                      .|++|.+.+..
T Consensus       332 ~fr~cp~v~~~  342 (423)
T KOG4219|consen  332 AFRWCPFVKGT  342 (423)
T ss_pred             hhheeeeeccc
Confidence            99988644443

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.78  E-value=1.5e-18  Score=138.64  Aligned_cols=79  Identities=13%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcC-----CC----chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYP-----DI----IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~-----~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      ++++|++||+++++++|++||+||+++.+++.+..     ..    .....+.++.+|+++|||+||+||++++++||++
T Consensus       230 ~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~  309 (338)
T PHA03234        230 KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR  309 (338)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence            45678999999999999999999999987765421     11    1234567888999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy1649          99 FKKIICKC  106 (170)
Q Consensus        99 ~~~~~~~~  106 (170)
                      +++.++..
T Consensus       310 ~~~~~~~~  317 (338)
T PHA03234        310 FTACFQDF  317 (338)
T ss_pred             HHHHHHHH
Confidence            99888654

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.77  E-value=3.4e-18  Score=139.55  Aligned_cols=82  Identities=15%  Similarity=0.257  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcC-----C----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHH
Q psy1649          29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYP-----D----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAF   99 (170)
Q Consensus        29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~-----~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~   99 (170)
                      ++.|+++|+++++++|++||+||+++.++..+..     .    .....+..++.+|+++|||+||+||++++++||+++
T Consensus       238 ~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~  317 (409)
T PHA03235        238 KRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRF  317 (409)
T ss_pred             cchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHH
Confidence            4567889999999999999999999988865431     1    122356778899999999999999999999999999


Q ss_pred             HHHHHhhhccC
Q psy1649         100 KKIICKCFCAQ  110 (170)
Q Consensus       100 ~~~~~~~~~~~  110 (170)
                      ++.++++.+.+
T Consensus       318 ~~~l~~~l~~~  328 (409)
T PHA03235        318 RQCFRGELFSR  328 (409)
T ss_pred             HHHHhhhhhhh
Confidence            99987654444

>KOG4220|consensus

Probab=99.75  E-value=4.5e-19  Score=140.65  Aligned_cols=83  Identities=29%  Similarity=0.546  Sum_probs=78.3

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC  106 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  106 (170)
                      ..+|+|++|+|.+|++.|++||+||.|+.++..|.+.+++.+++.+..||.|+||.+||++|++=|..||+.|++++.|.
T Consensus       409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr  488 (503)
T KOG4220|consen  409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCR  488 (503)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheee
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             hcc
Q psy1649         107 FCA  109 (170)
Q Consensus       107 ~~~  109 (170)
                      +..
T Consensus       489 ~~~  491 (503)
T KOG4220|consen  489 WKK  491 (503)
T ss_pred             ecc
Confidence            433

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.68  E-value=3.8e-17  Score=129.75  Aligned_cols=78  Identities=18%  Similarity=0.455  Sum_probs=63.6

Q ss_pred             hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--------ch--HHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--------IP--KTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--------~~--~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      .++|++||+++++++|++||+||+++.++..+.+..        ..  ..+..++.+++++|||+||+||++++++||++
T Consensus       223 ~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~  302 (323)
T PHA02834        223 NKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKV  302 (323)
T ss_pred             ccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence            456889999999999999999999998877653211        01  12345788899999999999999999999999


Q ss_pred             HHHHHHhh
Q psy1649          99 FKKIICKC  106 (170)
Q Consensus        99 ~~~~~~~~  106 (170)
                      ++++++++
T Consensus       303 ~~~~~~~~  310 (323)
T PHA02834        303 FKNMFCRT  310 (323)
T ss_pred             HHHHHHhh
Confidence            99988643

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.66  E-value=4.3e-16  Score=127.62  Aligned_cols=80  Identities=20%  Similarity=0.403  Sum_probs=66.3

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-----------C---chHHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-----------I---IPKTIFNVMFWLGYCNSAVNPLIYALFSK   93 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-----------~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   93 (170)
                      +++.|.+|++++++++|++||+||+++.++..+...           +   ..+.+..++.+++++|||+||+||+++++
T Consensus       306 ~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~  385 (417)
T PHA02638        306 SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGE  385 (417)
T ss_pred             cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCH
Confidence            346788999999999999999999999988765411           0   11245568889999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy1649          94 DFRFAFKKIICKCF  107 (170)
Q Consensus        94 ~fR~~~~~~~~~~~  107 (170)
                      +||+++++++++..
T Consensus       386 ~FR~~l~~~~~~~~  399 (417)
T PHA02638        386 NFRMHLLMIFRNIF  399 (417)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999886554

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.56  E-value=1.5e-14  Score=115.09  Aligned_cols=81  Identities=21%  Similarity=0.221  Sum_probs=65.6

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhc-----CCC----chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFY-----PDI----IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~-----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      +++.|++|++++++++|++||+||++..++..+.     ...    ....+..++.+++++||++||+||++++++||++
T Consensus       237 ~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~  316 (335)
T PHA03087        237 KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH  316 (335)
T ss_pred             hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence            4567899999999999999999999987766432     111    1234556788899999999999999999999999


Q ss_pred             HHHHHHhhhc
Q psy1649          99 FKKIICKCFC  108 (170)
Q Consensus        99 ~~~~~~~~~~  108 (170)
                      +++.++....
T Consensus       317 ~~~~~~~~~~  326 (335)
T PHA03087        317 KKKSLKLMFT  326 (335)
T ss_pred             HHHHHHHHhh
Confidence            9999874443

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.28  E-value=2.7e-11  Score=91.04  Aligned_cols=65  Identities=29%  Similarity=0.549  Sum_probs=59.1

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--chHHHHHHHHHHHHhhhhhhHHHH
Q psy1649          24 SLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIY   88 (170)
Q Consensus        24 ~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiiY   88 (170)
                      +...++++|+++++++++++|++||+|+.+..++..+.+..  .......++.+++++||++||+||
T Consensus       191 ~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  191 RRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence            34567789999999999999999999999999999988766  678899999999999999999999

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.83  E-value=1.1e-08  Score=80.99  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHH
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI  102 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~  102 (170)
                      .++-+.++|++++++.|+++-+|+.+..++..+...     .....+..+..+|..+|++.|++||++++.+||++++++
T Consensus       235 ~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~  314 (318)
T PF10324_consen  235 KKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKL  314 (318)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHH
Confidence            356678999999999999999999999999876422     233567788889999999999999999999999999999


Q ss_pred             HHh
Q psy1649         103 ICK  105 (170)
Q Consensus       103 ~~~  105 (170)
                      +++
T Consensus       315 f~~  317 (318)
T PF10324_consen  315 FGC  317 (318)
T ss_pred             hcc
Confidence            974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>KOG2087|consensus

Probab=98.75  E-value=3.4e-10  Score=89.27  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHH-HHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhcc
Q psy1649          31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIF-NVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCA  109 (170)
Q Consensus        31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~-~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~  109 (170)
                      ..++|-++.++.+-++||.|.+++.+...+..+.+..... .+..++.-+|||+||++|+|+++.||+.++.++.+..++
T Consensus       231 ~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~  310 (363)
T KOG2087|consen  231 TSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLC  310 (363)
T ss_pred             hhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchh
Confidence            3677788999999999999999999998887554443333 233334459999999999999999999999998766433

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.96  E-value=9.2e-06  Score=62.70  Aligned_cols=77  Identities=14%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII  103 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~  103 (170)
                      ..+++|+.|.+.+++++|++.|.=-.+...+....+.  .....+.....+++.++.+.|-+||.+.+++||++++++|
T Consensus       179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            4556889999999999999999977666555443333  2334567778899999999999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.55  E-value=0.00059  Score=53.42  Aligned_cols=81  Identities=12%  Similarity=-0.006  Sum_probs=55.5

Q ss_pred             HhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCc-hHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649          23 ASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDII-PKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK  101 (170)
Q Consensus        23 ~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~  101 (170)
                      .....++|.+++.+.++.++++++...=| ++..+........ ...+..+..++.-+.|.+||+.--++|+++|+++++
T Consensus       201 ~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~  279 (283)
T PF10323_consen  201 SSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRR  279 (283)
T ss_pred             hhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHH
Confidence            44467788999988877777665554444 4333333332222 222333566677889999999999999999999999


Q ss_pred             HHH
Q psy1649         102 IIC  104 (170)
Q Consensus       102 ~~~  104 (170)
                      .++
T Consensus       280 ~~~  282 (283)
T PF10323_consen  280 MLK  282 (283)
T ss_pred             HcC
Confidence            876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=97.54  E-value=0.00065  Score=42.59  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHHHhHhHhhH-hHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649          29 GFLDVMVVVGNSLSNPIFCWL-PFFSLYLLGGFY-PDIIPKTIFNVMFWLGYCNSAVNPLIYALFSK   93 (170)
Q Consensus        29 ~~~k~~k~l~~vv~~F~icw~-P~~v~~l~~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   93 (170)
                      +-.|.++.+++==++|+++|+ |+.+-.+-.... ...+...+..++.++..+|..+|-++|.+.-+
T Consensus         6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er   72 (76)
T PF11970_consen    6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER   72 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence            346778999999999999999 987766655432 34455678888888999999999999987654

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.04  E-value=0.0072  Score=47.82  Aligned_cols=74  Identities=18%  Similarity=0.049  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649          30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC  106 (170)
Q Consensus        30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  106 (170)
                      ..|++|+++..++.|+++++-..+..+...+.   ....+..+...++++.+..+|+|-.+-|++.|+++++++++.
T Consensus       229 H~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~  302 (303)
T PF05296_consen  229 HIRAIKTMISFLILYIIYFLSLILSFLSFFFP---ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence            35788888888877777665544322222222   224566788889999999999999999999999999998743

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=96.47  E-value=0.049  Score=43.18  Aligned_cols=71  Identities=11%  Similarity=-0.019  Sum_probs=54.2

Q ss_pred             HHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhcc
Q psy1649          37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCA  109 (170)
Q Consensus        37 l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~  109 (170)
                      +..=.++|++||+|-.+-.+...++...  ..+..+-..++-+.=.+|.++|.+-++-.++.+...+++.+..
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~~~--~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~~  274 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGKNP--FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFTK  274 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Confidence            5568889999999999999999876332  3344444556667778999999999999999988877654433

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.89  E-value=0.038  Score=44.74  Aligned_cols=26  Identities=19%  Similarity=0.099  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhHhHhhHhHHHHHHHHh
Q psy1649          34 MVVVGNSLSNPIFCWLPFFSLYLLGG   59 (170)
Q Consensus        34 ~k~l~~vv~~F~icw~P~~v~~l~~~   59 (170)
                      -+-.+.|+++|++||+|..|--++.+
T Consensus       243 K~kFf~I~lVF~iCWlpNIINg~LL~  268 (405)
T PF02101_consen  243 KIKFFKIMLVFYICWLPNIINGSLLF  268 (405)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence            34467788999999999988655443

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=95.86  E-value=0.0078  Score=47.88  Aligned_cols=72  Identities=8%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      .+.+++++.-.+++.+..++.++=|.....+      ..++.+..+..+.=.+++..+|+||-.+|+..|++++++++
T Consensus       235 ~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~  306 (313)
T PF10321_consen  235 SKAQRQIFIQSVIICFFHAIAAVIYVYMQFF------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG  306 (313)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHeeeee------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence            3445566666666655555555444332221      23456667777777899999999999999999999999986

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.39  E-value=0.069  Score=41.40  Aligned_cols=76  Identities=12%  Similarity=-0.007  Sum_probs=55.3

Q ss_pred             HHhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649          22 LASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK  101 (170)
Q Consensus        22 ~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~  101 (170)
                      +.+++.++|.+.++-.++--++|++.|+=|++..-+.   +..  ...+..+.+.-.+.-++|++|+.++|+++|+.+++
T Consensus       197 ~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~~~--~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~  271 (274)
T PF10328_consen  197 ESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---SNR--WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRK  271 (274)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccc--HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHh
Confidence            3445677799999999999999999999888765442   222  22222233323466778999999999999999876


Q ss_pred             H
Q psy1649         102 I  102 (170)
Q Consensus       102 ~  102 (170)
                      .
T Consensus       272 ~  272 (274)
T PF10328_consen  272 K  272 (274)
T ss_pred             c
Confidence            4

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.33  E-value=0.084  Score=41.40  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=59.9

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK  101 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~  101 (170)
                      +...+.++|.+.+=.++=+++..|-.+.+++..+.... ......+...++.+-+++||+++-++-+.||++++|
T Consensus       219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            33456789999999999999999888877776665433 356777777788999999999999999999998864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.61  E-value=0.11  Score=41.23  Aligned_cols=75  Identities=13%  Similarity=0.142  Sum_probs=60.8

Q ss_pred             HhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          23 ASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        23 ~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      .+...++.+++++-+++=.++-.+|.+|..++.++-.+.... ...+..++..+..++|.+|-++-.+.++.||+-
T Consensus       228 S~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~-~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  228 SKQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFED-AQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC-cHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            345677888899999999999999999998877766554333 345667777888899999999999999999974

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.26  E-value=0.69  Score=36.23  Aligned_cols=78  Identities=10%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHh-hHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFC-WLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~ic-w~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      ..+-.+|.++.+.+=+++.+++ -.|...+.+...++.  ....+..++.++.-.+..+.-++.-+.++.+|+.+.++++
T Consensus       224 T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~--~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~  301 (302)
T PF10318_consen  224 TRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY--YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR  301 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence            3444556666666655555444 448877666554432  1234556777788899999999999999999999999987


Q ss_pred             h
Q psy1649         105 K  105 (170)
Q Consensus       105 ~  105 (170)
                      |
T Consensus       302 ~  302 (302)
T PF10318_consen  302 C  302 (302)
T ss_pred             C
Confidence            3

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>KOG2575|consensus

Probab=89.13  E-value=0.44  Score=39.17  Aligned_cols=25  Identities=20%  Similarity=0.526  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHHHHhHhHhhHhHHHH
Q psy1649          30 FLDVMVVVGNSLSNPIFCWLPFFSL   54 (170)
Q Consensus        30 ~~k~~k~l~~vv~~F~icw~P~~v~   54 (170)
                      -.++++..++|+++|+|||+|+...
T Consensus       254 f~ri~~ia~~Vv~TF~iiw~P~~~~  278 (510)
T KOG2575|consen  254 FARIIKIALAVVGTFVIIWLPFLLS  278 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4678999999999999999998653

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=88.62  E-value=0.3  Score=37.96  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=53.7

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAF   99 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~   99 (170)
                      .-.|.|+++++++.|.+|++.|.--.++.++.......  +.+..+..+++..-+.+-|++--..+++..+.+
T Consensus       193 ~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~--~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  193 SSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNS--PWLLNISVFLSSCFPTISPFVLISSDKRIIKFL  263 (265)
T ss_pred             CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCC--cceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence            34789999999999999999999887776654443332  334456777888889999999888888776543

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>KOG4564|consensus

Probab=87.27  E-value=1.6  Score=36.71  Aligned_cols=71  Identities=10%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhh
Q psy1649          30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCF  107 (170)
Q Consensus        30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~  107 (170)
                      -+|++|-.++.|-+|.|-++.+.       +.+..  .......+..+|..+.=.+=-+||+|.|++++.++++.+.+..
T Consensus       349 y~K~vKaTLvLIPLfGI~~ilf~-------~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~  421 (473)
T KOG4564|consen  349 YRKLVKATLVLIPLFGIHYILFA-------FRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR  421 (473)
T ss_pred             HHHHHHHHHHHHHHcCCeeEEEE-------ecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence            46788888888888877644322       11222  1223334444555566677789999999999999999987543

>PF03125 Sre: C

Probab=86.84  E-value=13  Score=30.12  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhc
Q psy1649          66 PKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFC  108 (170)
Q Consensus        66 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~  108 (170)
                      ......+......+++.+=|.+-....+..|+.+++.+....+
T Consensus       282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~  324 (365)
T PF03125_consen  282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC  324 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence            3455667777888888888888888999999999998875443

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG4193|consensus

Probab=85.11  E-value=9  Score=33.54  Aligned_cols=64  Identities=13%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh---hhhHHHHHHccHHHHHHHHHHHH
Q psy1649          32 DVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNS---AVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        32 k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns---~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      +.++.++..+.++-+.|.=-    ++.+..+  ...   .++.++.++|+   +.=-|+|+++.+++|++.++.++
T Consensus       514 ~~~~~~l~L~~lLGlTW~fg----i~s~~~~--~~~---v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~  580 (610)
T KOG4193|consen  514 SLIRSALALLFLLGLTWIFG----IFSWLPG--TSV---VFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC  580 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhcc--cch---HHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence            66788888888888888632    2222111  222   23344455555   35577899999999999999887

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=84.42  E-value=8.6  Score=29.43  Aligned_cols=70  Identities=11%  Similarity=0.029  Sum_probs=39.1

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      +.|+++.++.++..+++++.-+.-.+..+ ..+.+. ...+....+.....=+-+...|++--+++++.|++
T Consensus       204 ~~er~L~~is~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~  274 (275)
T PF02118_consen  204 SVERNLTIISFIISFVQLLIAIWQIINSF-AFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ  274 (275)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence            34555565555555555544433333111 111122 23344444444445566788899999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
3sn6_R	514	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-10
3p0g_A	501	Structure Of A Nanobody-Stabilized Active State Of		3e-09
2rh1_A	500	High Resolution Crystal Structure Of Human B2-Adren		3e-09
3d4s_A	490	Cholesterol Bound Form Of Human Beta2 Adrenergic Re		4e-09
2r4r_A	365	Crystal Structure Of The Human Beta2 Adrenoceptor L		5e-09
3pds_A	458	Irreversible Agonist-Beta2 Adrenoceptor Complex Len		5e-09
3kj6_A	366	Crystal Structure Of A Methylated Beta2 Adrenergic		5e-09
2r4s_A	342	Crystal Structure Of The Human Beta2 Adrenoceptor L		7e-09
2y00_B	315	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-09
2vt4_A	313	Turkey Beta1 Adrenergic Receptor With Stabilising M		7e-09
4gbr_A	309	N-terminal T4 Lysozyme Fusion Facilitates Crystalli		2e-08
3pbl_A	481	Structure Of The Human Dopamine D3 Receptor In Comp		4e-08
4daj_A	479	Structure Of The M3 Muscarinic Acetylcholine Recept		5e-08
3rze_A	452	Structure Of The Human Histamine H1 Receptor In Com		2e-07
3uon_A	467	Structure Of The Human M2 Muscarinic Acetylcholine		3e-05
2ks9_A	364	Solution Conformation Of Substance P In Water Compl		6e-04
3eml_A	488	The 2.6 A Crystal Structure Of A Human A2a Adenosin		9e-04

>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 46  FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
            CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR AF++++C
Sbjct: 433 LCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC 490

>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 411 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 469
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 470 IAFQELLC 477

>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 410 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 468
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 469 IAFQELLC 476

>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 411 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 469
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 470 IAFQELLC 477

>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 275 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 333
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 334 IAFQELLC 341

>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 379 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 437
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 438 IAFQELLC 445

>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 276 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 334
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 335 IAFQELLC 342

>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 252 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 310
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 311 IAFQELLC 318

>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 46  FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
            CWLPFF + ++  F  D++P  +F    WLGY NSA+NP+IY   S DFR AFK+++
Sbjct: 243 LCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 299

>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 46  FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
            CWLPFF + ++  F  D++P  +F    WLGY NSA+NP+IY   S DFR AFK+++
Sbjct: 241 LCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 297

>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  +     CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR
Sbjct: 219 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 277
Query: 97  FAFKKIIC 104
            AF++++C
Sbjct: 278 IAFQELLC 285

>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 36  VVGNSLSNPIFCWLPFFSLYLLGGFYPDI-IPKTIFNVMFWLGYCNSAVNPLIYALFSKD 94
           +V   L   I CWLPFF  ++L        +   +++   WLGY NSA+NP+IY  F+ +
Sbjct: 402 MVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIE 461
Query: 95  FRFAFKKII 103
           FR AF KI+
Sbjct: 462 FRKAFLKIL 470

>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK-II 103
           I  W P+  + L+  F    IPKT +N+ +WL Y NS VNP+ YAL +K FR  FK  ++
Sbjct: 384 IITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLL 443
Query: 104 CKC 106
           C+C
Sbjct: 444 CQC 446

>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 37  VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
           +G  ++  I CW+P+F  +++  F  +   + +     WLGY NS +NPLIY L +++F+
Sbjct: 375 LGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFK 434
Query: 97  FAFKKII 103
             FK+I+
Sbjct: 435 KTFKRIL 441

>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           I  W P+  + L+  F    IP T++ + +WL Y NS +NP  YAL +  F+  FK ++
Sbjct: 398 IITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456

>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 47  CWLPFFSLYLLGGFYPDIIPKT----IFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           CWLPF   +LL    PD+  K     ++  + WL   ++  NP+IY   +  FR  FK  
Sbjct: 260 CWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHA 319
Query: 103 I-CKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSK 135
             C  F +          S R  +   +  +VS+
Sbjct: 320 FRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSR 353

>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46  FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
            CWLP   +     F PD    P  +  +   L + NS VNP IYA   ++FR  F+KII
Sbjct: 406 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 465

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	4e-26
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	2e-25
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	4e-25
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	5e-25
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	1e-24
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	2e-24
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	6e-24
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	9e-24
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	3e-23
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-20
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	1e-15
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	1e-11
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	3e-10
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-10
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	2e-08

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467

 Score =  101 bits (253), Expect = 4e-26
 Identities = 21/68 (30%), Positives = 34/68 (50%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I  W P+  + L+  F    IP T++ + +WL Y NS +NP  YAL +  F+  FK ++ 
Sbjct: 398 IITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457

Query: 105 KCFCAQNT 112
             +     
Sbjct: 458 CHYKNIGA 465

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII- 103
             CWLPFF + ++  F  D++P  +F    WLGY NSA+NP+IY   S DFR AFK+++ 
Sbjct: 242 TLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA 300

Query: 104 CKCFCAQNTNLRH 116
                 +  +  H
Sbjct: 301 FPRKADRRLHHHH 313

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500

 Score = 99.4 bits (247), Expect = 4e-25
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
             CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR AF++++C
Sbjct: 418 TLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 476

Query: 105 KCFCAQNTNLRHNTSS 120
               +        +S+
Sbjct: 477 LRRSSLKAYGNGYSSN 492

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452

 Score = 98.6 bits (245), Expect = 5e-25
 Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
           I CW+P+F  +++  F  +   + +     WLGY NS +NPLIY L +++F+  FK+I+ 
Sbjct: 383 ILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILH 442

Query: 105 KCFCAQNT 112
                +N 
Sbjct: 443 -IRSGENL 449

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 97.4 bits (242), Expect = 1e-24
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             CWLP   +     F PD    P  +  +   L + NS VNP IYA   ++FR  F+KI
Sbjct: 364 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 423

Query: 103 ICKCFCAQNTNLRHNTSSKRRFRRDSNQSQ 132
           I           R     K       +   
Sbjct: 424 IRSHVL------RQQEPFKAHHHHHHHHHH 447

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 97.5 bits (242), Expect = 2e-24
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 45  IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
             CWLP   +     F PD    P  +  +   L + NS VNP IYA   ++FR  F+KI
Sbjct: 405 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 464

Query: 103 ICKCFCAQNTNLRHNTSSKRRFRRDSNQSQ 132
           I           R     K       +   
Sbjct: 465 IRSHVL------RQQEPFKAHHHHHHHHHH 488

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514

 Score = 96.1 bits (239), Expect = 6e-24
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
             CWLPFF + ++     ++I K ++ ++ W+GY NS  NPLIY   S DFR AF++++C
Sbjct: 432 TLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 490

Query: 105 KCFCAQNTNLRHNTSS 120
               +        +S+
Sbjct: 491 LRRSSLKAYGNGYSSN 506

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481

 Score = 95.6 bits (237), Expect = 9e-24
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 45  IFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           I CWLPFF  ++L        +   +++   WLGY NSA+NP+IY  F+ +FR AF KI+
Sbjct: 411 IVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470

Query: 104 CKCFCAQNTNLR 115
             C        +
Sbjct: 471 S-CGRPLEVLFQ 481

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520

 Score = 94.2 bits (233), Expect = 3e-23
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 45  IFCWLPFFSLYLLGGFYPDIIPKTIFNVMF--WLGYCNSAVNPLIYALFSKDFRFAFKKI 102
           I CW P F L LL           +F   +   L   NS  NP+IY L +K+ R AF +I
Sbjct: 431 IACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRI 490

Query: 103 ICKCFCAQNTNLRHNT--SSKRRFRRDSNQ 130
           + +          H+        ++ D ++
Sbjct: 491 MGRPLEVLFQGPHHHHHHHHHHDYKDDDDK 520

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 12/116 (10%)

Query: 33  VMVVVGNSLSNPIF--CWLPFFSLYLLGGFYPDIIPKTIFNVMF----WLGYCNSAVNPL 86
           ++VVV        F  CWLPF   +LL    PD+  K     ++    WL   ++  NP+
Sbjct: 250 MIVVVC------TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPI 303

Query: 87  IYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPS 142
           IY   +  FR  FK     C      +         R+ +         R   + S
Sbjct: 304 IYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTIS 359

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 60.8 bits (147), Expect = 1e-11
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 45  IFCWLPFFS---LYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101
           I CW P      +  L            ++    LGY NS +NP++YA   ++F+  F++
Sbjct: 393 IVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452

Query: 102 IICKC 106
                
Sbjct: 453 FCIPT 457

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 45  IFCWLPFFSLYLLGGF-YPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           + CWLP+  +                  +  +    ++  NP+IY + +K FR      +
Sbjct: 263 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 322

Query: 104 CKCFCAQNTNLRHNTSSK 121
           C        +    T SK
Sbjct: 323 CCGKNPLGDDEASTTVSK 340

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)

Query: 45  IFCWLPFFSLYLLGGFYP-DIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           +  W P+  + LL  F P + +      +       ++  NP+IY++    FR A  +  
Sbjct: 271 LLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330

Query: 104 CKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQ 163
                    + +     K        +    + ++ +PS     ++             Q
Sbjct: 331 PWVLTCCQFDDKETEDDK----DAETEIPAGESSDAAPS----ADAAQMKEMMAMMQKMQ 382

Query: 164 NANDNSR 170
                  
Sbjct: 383 QQQAAYP 389

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 45  IFCWLPFF------SLYLLGGFYPDIIPKTIFNVMF----WLGYCNSAVNPLIYALFSKD 94
             CWLP++      S  LL         +   +        L + +  +NP++YA     
Sbjct: 423 FACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK 482

Query: 95  FRFAFKKIICKCFC 108
           F+ + +  +     
Sbjct: 483 FKTSAQHALTSGRP 496

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.88
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.84
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.81
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.8
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.79
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.79
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.78
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.78
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.76
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.76
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.76
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.75
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.73
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.73
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.73
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.69
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.69
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.66
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.11
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.97

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.88  E-value=9e-24  Score=175.04  Aligned_cols=82  Identities=23%  Similarity=0.412  Sum_probs=63.7

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--------chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--------IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA   98 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--------~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~   98 (170)
                      .++++|++||+++|+++|++||+||+++.++..+.+..        ....++.++.||+|+|||+|||||+++|++||++
T Consensus       401 ~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~a  480 (510)
T 4grv_A          401 VQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQV  480 (510)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            45788999999999999999999999999998876542        2235667889999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q psy1649          99 FKKIICKCFC  108 (170)
Q Consensus        99 ~~~~~~~~~~  108 (170)
                      |+++|+|+|+
T Consensus       481 Fk~iL~C~C~  490 (510)
T 4grv_A          481 FLSTLACLCP  490 (510)
T ss_dssp             ----------
T ss_pred             HHHHHhhcCC
Confidence            9999976543

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.84  E-value=4.7e-21  Score=158.13  Aligned_cols=78  Identities=35%  Similarity=0.760  Sum_probs=71.6

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC  106 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  106 (170)
                      ++|+|++||+++|+++|++||+||+++.++..+.....+..++.++.||+|+||++||+||++ +++||++|+++++++
T Consensus       401 ~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~~  478 (500)
T 2rh1_A          401 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLR  478 (500)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhhh
Confidence            478999999999999999999999999999998866777888999999999999999999986 999999999999643

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.81  E-value=1e-19  Score=148.22  Aligned_cols=86  Identities=28%  Similarity=0.409  Sum_probs=76.2

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII  103 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~  103 (170)
                      ..++++|+++|+++|+++|++||+||+++.++..+.+.  .....+..++.+|+++||++||+||++++++||++++++|
T Consensus       386 ~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~  465 (488)
T 3eml_A          386 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  465 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHH
Confidence            35678999999999999999999999999999988754  4556788899999999999999999999999999999999


Q ss_pred             HhhhccCC
Q psy1649         104 CKCFCAQN  111 (170)
Q Consensus       104 ~~~~~~~~  111 (170)
                      ++++++..
T Consensus       466 ~~~~~~~~  473 (488)
T 3eml_A          466 RSHVLRQQ  473 (488)
T ss_dssp             HHTTSCC-
T ss_pred             hhcccccC
Confidence            97765544

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.80  E-value=3e-19  Score=144.13  Aligned_cols=86  Identities=28%  Similarity=0.409  Sum_probs=74.0

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII  103 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~  103 (170)
                      ..++++|++||+++++++|++||+||+++.++..+.+.  .....+..++.+|+++||++||+||++++++||+++++++
T Consensus       345 ~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~  424 (447)
T 4eiy_A          345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  424 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHH
Confidence            45678999999999999999999999999999888653  4456788899999999999999999999999999999999


Q ss_pred             HhhhccCC
Q psy1649         104 CKCFCAQN  111 (170)
Q Consensus       104 ~~~~~~~~  111 (170)
                      ++++++..
T Consensus       425 ~~~~~r~~  432 (447)
T 4eiy_A          425 RSHVLRQQ  432 (447)
T ss_dssp             HHTC----
T ss_pred             HHHHhccC
Confidence            87665543

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.79  E-value=7.6e-20  Score=149.15  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=60.6

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFK  100 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~  100 (170)
                      +.++++|++||+++|+++|++||+||+++.++..+...     .....++.++.+|+++||++||+||++++++||++++
T Consensus       381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~  460 (484)
T 3vw7_A          381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVY  460 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHH
Confidence            44567899999999999999999999999999876532     2334677789999999999999999999999999999


Q ss_pred             HHHHhhh
Q psy1649         101 KIICKCF  107 (170)
Q Consensus       101 ~~~~~~~  107 (170)
                      ++++|.+
T Consensus       461 ~ll~~~~  467 (484)
T 3vw7_A          461 SILCCKE  467 (484)
T ss_dssp             -------
T ss_pred             HHHhhcc
Confidence            9987443

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.79  E-value=2.1e-19  Score=145.78  Aligned_cols=82  Identities=28%  Similarity=0.522  Sum_probs=72.7

Q ss_pred             hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhh
Q psy1649          28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCF  107 (170)
Q Consensus        28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~  107 (170)
                      ++++|+++|+++++++|++||+||+++.++..+.+......+..++.+|+++||++||+||++++++||++++++|+|++
T Consensus       381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~~  460 (467)
T 3uon_A          381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHY  460 (467)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhhc
Confidence            46799999999999999999999999999999987777788999999999999999999999999999999999996544


Q ss_pred             cc
Q psy1649         108 CA  109 (170)
Q Consensus       108 ~~  109 (170)
                      +.
T Consensus       461 ~~  462 (467)
T 3uon_A          461 KN  462 (467)
T ss_dssp             --
T ss_pred             cC
Confidence            33

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.78  E-value=2.6e-19  Score=144.62  Aligned_cols=82  Identities=28%  Similarity=0.600  Sum_probs=72.9

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC  106 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  106 (170)
                      .++++|+++|+++++++|++||+||+++.++..+.+......+..++.+|+++||++||+||++++++||++++++++++
T Consensus       365 ~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~~  444 (452)
T 3rze_A          365 MNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIR  444 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHhc
Confidence            34789999999999999999999999999999987776667788899999999999999999999999999999999754


Q ss_pred             hc
Q psy1649         107 FC  108 (170)
Q Consensus       107 ~~  108 (170)
                      ++
T Consensus       445 ~~  446 (452)
T 3rze_A          445 SG  446 (452)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.78  E-value=8.7e-20  Score=151.37  Aligned_cols=81  Identities=30%  Similarity=0.333  Sum_probs=68.7

Q ss_pred             hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649          29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC  106 (170)
Q Consensus        29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~  106 (170)
                      +++|+++|+++++++|++||+||+++.++..+.+.  ........++.+|+++|||+||+||++++++||++++++++++
T Consensus       415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  494 (520)
T 3v2y_A          415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRP  494 (520)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999887653  2233455677889999999999999999999999999998755


Q ss_pred             hcc
Q psy1649         107 FCA  109 (170)
Q Consensus       107 ~~~  109 (170)
                      +..
T Consensus       495 ~~~  497 (520)
T 3v2y_A          495 LEV  497 (520)
T ss_dssp             C--
T ss_pred             ccc
Confidence            444

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.76  E-value=1.6e-18  Score=141.22  Aligned_cols=77  Identities=36%  Similarity=0.662  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHh
Q psy1649          29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICK  105 (170)
Q Consensus        29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~  105 (170)
                      +++|+++|+++++++|++||+||+++.++..+.+. .....++.++.+|+++||++||+||++++++||++++++|+|
T Consensus       395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  472 (481)
T 3pbl_A          395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC  472 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhc
Confidence            58999999999999999999999999999887654 456778889999999999999999999999999999999973

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.76  E-value=1.6e-18  Score=133.52  Aligned_cols=79  Identities=25%  Similarity=0.450  Sum_probs=68.1

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCch----------HHHHHHHHHHHHhhhhhhHHHHHHccHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIP----------KTIFNVMFWLGYCNSAVNPLIYALFSKDFR   96 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~----------~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR   96 (170)
                      .++++|++||+++++++|++||+||+++.++..+......          ..+..++.+|+++||++||+||++++++||
T Consensus       206 ~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR  285 (296)
T 2lnl_A          206 MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFR  285 (296)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHH
T ss_pred             hhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            3456789999999999999999999999999887644211          256678899999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy1649          97 FAFKKIICK  105 (170)
Q Consensus        97 ~~~~~~~~~  105 (170)
                      ++++++++|
T Consensus       286 ~~~~~ll~c  294 (296)
T 2lnl_A          286 HGFLKILAM  294 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999973

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.76  E-value=7.6e-18  Score=132.76  Aligned_cols=82  Identities=26%  Similarity=0.555  Sum_probs=70.3

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI  102 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~  102 (170)
                      .++++|+++++++++++|++||+||+++.++..+.+.    .....++.+..+++++||++||+||++++++||++++++
T Consensus       240 ~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~  319 (364)
T 2ks9_A          240 VSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHA  319 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3457899999999999999999999999998887643    223457778889999999999999999999999999999


Q ss_pred             HHhhhc
Q psy1649         103 ICKCFC  108 (170)
Q Consensus       103 ~~~~~~  108 (170)
                      +++|.+
T Consensus       320 ~~~~~~  325 (364)
T 2ks9_A          320 FRCCPF  325 (364)
T ss_dssp             HSSSCC
T ss_pred             HhhcCC
Confidence            976543

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.75  E-value=2.5e-18  Score=139.22  Aligned_cols=77  Identities=21%  Similarity=0.464  Sum_probs=67.8

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC---CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD---IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII  103 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~  103 (170)
                      .++++|++||+++|+++|++||+||+++.++..+...   .....++.++.+|+++||++||+||++++++||+++++++
T Consensus       375 ~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~lc  454 (464)
T 4dkl_A          375 DRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC  454 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHHHHh
Confidence            3677899999999999999999999999999987643   3345667788899999999999999999999999999973

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.73  E-value=2.2e-17  Score=129.00  Aligned_cols=79  Identities=18%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHh
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICK  105 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~  105 (170)
                      .++++|+++++++++++|++||+||+++.++..+... .....+..++.+++++||++||+||++++++||+++++++++
T Consensus       245 ~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c  324 (349)
T 1u19_A          245 QKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC  324 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcc
Confidence            3456789999999999999999999999888777543 445567788889999999999999999999999999999863

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.73  E-value=1.2e-17  Score=128.55  Aligned_cols=78  Identities=37%  Similarity=0.750  Sum_probs=70.7

Q ss_pred             hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHh
Q psy1649          27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICK  105 (170)
Q Consensus        27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~  105 (170)
                      .+++.|+++++++++++|++||+||+++.++..+......+.+..++.+++++||++||+||+ ++++||+++++++++
T Consensus       224 ~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~  301 (315)
T 4amj_A          224 LMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF  301 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC-
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCC
Confidence            446789999999999999999999999999998877766677888899999999999999999 999999999999864

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.73  E-value=6.9e-19  Score=144.05  Aligned_cols=83  Identities=13%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC----------CchHHHHHHHHHHHHhhhhhhHHHHHHccHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD----------IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDF   95 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~----------~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~f   95 (170)
                      +.++++|+++|+++|+++|++||+||+++.++..+...          .....++.++.+|+++||++||+||++++++|
T Consensus       404 ~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~f  483 (502)
T 3odu_A          404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKF  483 (502)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCC
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHH
Confidence            35668999999999999999999999999998876411          23345667899999999999999999999999


Q ss_pred             HHHHHHHHHhhhc
Q psy1649          96 RFAFKKIICKCFC  108 (170)
Q Consensus        96 R~~~~~~~~~~~~  108 (170)
                      |++++++++++.+
T Consensus       484 R~~~~~ll~~~~~  496 (502)
T 3odu_A          484 KTSAQHALTSGRP  496 (502)
T ss_dssp             CCCHHHHHSSCSS
T ss_pred             HHHHHHHhccCCc
Confidence            9999999975443

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.69  E-value=3.2e-17  Score=135.51  Aligned_cols=79  Identities=34%  Similarity=0.766  Sum_probs=70.5

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHh
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICK  105 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~  105 (170)
                      ..+++.|+++++++++++|++||+||+++.++..+........+..++.+++++||++||+||+ ++++||+++++++++
T Consensus       413 ~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~  491 (514)
T 3sn6_R          413 FCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL  491 (514)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCc
Confidence            3457789999999999999999999999999998876666677888999999999999999999 999999999998863

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.69  E-value=1.5e-16  Score=129.10  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=69.7

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      ..++++|++|++++++++|++||+|++++.++..+... .....+..+..+++++||++||+||++++++||++++++++
T Consensus       252 ~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~  331 (448)
T 2z73_A          252 GANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP  331 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence            34568899999999999999999999999999887643 23456677888999999999999999999999999999986


Q ss_pred             h
Q psy1649         105 K  105 (170)
Q Consensus       105 ~  105 (170)
                      +
T Consensus       332 ~  332 (448)
T 2z73_A          332 W  332 (448)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.11  E-value=4.1e-12  Score=69.42  Aligned_cols=36  Identities=47%  Similarity=0.689  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649          69 IFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        69 ~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      ++.++.+++++||++||+||++++++||++++++++
T Consensus         2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~   37 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP   37 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhh
Confidence            456888999999999999999999999999988764

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.97  E-value=2.4e-11  Score=63.54  Aligned_cols=30  Identities=20%  Similarity=0.474  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649          31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGF   60 (170)
Q Consensus        31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~   60 (170)
                      +|++||+++++++|++||+||++..++..+
T Consensus         2 ~k~~k~l~~vv~~F~icW~P~~i~~~~~~~   31 (33)
T 2ki9_A            2 VRLAKTLGLVLAVLLICWFPVLALMAHSLA   31 (33)
T ss_dssp             CSSSSHHHHHHHHHTTTSSHHHHHHTTTTC
T ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            567899999999999999999998887644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	3e-13

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           + CWLP+  +      +           +  +    ++  NP+IY + +K FR      +
Sbjct: 262 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321

Query: 104 CKCFCAQNTNLRHNTSSKRR 123
           C        +    T SK  
Sbjct: 322 CCGKNPLGDDEASTTVSKTE 341

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.76

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.5e-18  Score=132.77  Aligned_cols=79  Identities=18%  Similarity=0.318  Sum_probs=69.5

Q ss_pred             hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649          26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC  104 (170)
Q Consensus        26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~  104 (170)
                      ..++++|++|++++++++|++||+||.++.++...... .....+..++.+++++||++||+||++++++||++++++++
T Consensus       243 ~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~  322 (348)
T d1u19a_         243 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC  322 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred             hHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhC
Confidence            34457899999999999999999999999888777644 45566778889999999999999999999999999999986