Psyllid ID: psy16512
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 815 | 2.2.26 [Sep-21-2011] | |||||||
| Q16P90 | 764 | Molybdenum cofactor sulfu | N/A | N/A | 0.862 | 0.920 | 0.390 | 1e-156 | |
| Q16GH0 | 764 | Molybdenum cofactor sulfu | N/A | N/A | 0.862 | 0.920 | 0.382 | 1e-154 | |
| Q14CH1 | 862 | Molybdenum cofactor sulfu | yes | N/A | 0.847 | 0.801 | 0.374 | 1e-146 | |
| B0WSX1 | 760 | Molybdenum cofactor sulfu | N/A | N/A | 0.822 | 0.881 | 0.372 | 1e-146 | |
| Q96EN8 | 888 | Molybdenum cofactor sulfu | yes | N/A | 0.841 | 0.772 | 0.366 | 1e-143 | |
| Q8IU29 | 822 | Molybdenum cofactor sulfu | N/A | N/A | 0.851 | 0.844 | 0.381 | 1e-139 | |
| Q7QFL7 | 770 | Molybdenum cofactor sulfu | yes | N/A | 0.826 | 0.875 | 0.361 | 1e-137 | |
| A2VD33 | 831 | Molybdenum cofactor sulfu | yes | N/A | 0.849 | 0.832 | 0.373 | 1e-134 | |
| B4L340 | 779 | Molybdenum cofactor sulfu | N/A | N/A | 0.833 | 0.871 | 0.356 | 1e-128 | |
| B4M3C9 | 780 | Molybdenum cofactor sulfu | N/A | N/A | 0.835 | 0.873 | 0.360 | 1e-125 |
| >sp|Q16P90|MOCO3_AEDAE Molybdenum cofactor sulfurase 3 OS=Aedes aegypti GN=mal3 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/776 (39%), Positives = 457/776 (58%), Gaps = 73/776 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ+R ++L+
Sbjct: 24 SRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQVRYRVLR 79
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT S YS+IFTSG T+++K ++E +EF EG+F+YL D+HTSVLGMRE+V T +IY
Sbjct: 80 HFNTRSSEYSLIFTSGTTASLKLLAESYEFAPEGAFVYLKDSHTSVLGMREIVGTERIYP 139
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF--- 232
+ +L E S+ + + HS SL V+PA+ NF+G KYPL + RN +
Sbjct: 140 V---EREQLLKELDSSERS--DSEHS-SLIVFPAQCNFNGVKYPLELVRKIQRNGISGYG 193
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL+V +A
Sbjct: 194 KERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGALLVHHTAA 246
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
L K +YGGGTVKI+MA NFH+K+D L E+FEDGT+ + +II+L GF+T+E+ S
Sbjct: 247 DQLRKKYYGGGTVKIAMAGRNFHVKRDPLVERFEDGTLAFTSIIALLQGFETLERLVPST 306
Query: 353 T----------NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
F L +Y Y K L +SNG +V+LYHDT + + QG IVNFN+LH
Sbjct: 307 AGLRTIERISQQTFHLGRYCYNRLKALRHSNGNAVVKLYHDTGFEDQGLQGGIVNFNILH 366
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462
+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+CGD D+
Sbjct: 367 EDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDL 426
Query: 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
IDG+PTGS+R+S+G+ + +D+ L + + ++++ ++ G Q K +
Sbjct: 427 IDGQPTGSVRVSFGYMTRKEDIDCLLEMVEKCYIRKT--IANG---FTRTQIVSKYKSY- 480
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
+ +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +GV LTQK
Sbjct: 481 --------DQPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENGVALTQKK 532
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGI---DNEGLDLCTSKVCSDKITGFDCGN 639
+CL++P ++ N MTL + S V +++ + LC +KVC D + DCG+
Sbjct: 533 LTEMCLIRPQINLKTNEMTLSHPSMDDFVLDLDLLGESQRIKLCQTKVCQDNVQAIDCGD 592
Query: 640 AVANWLDEQLNRKGLRLIRISK------RSSKRNINSFSNMGQYLLITLPSIQ------A 687
VA W+ L GLRL++ S + SK+ I + +N Q+LLI S++
Sbjct: 593 QVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEI-ALANQAQFLLINQASVRWLADKVP 651
Query: 688 QLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQ 747
+ L+ LE+ V+RFR N +V + E DW +V I G L F V C+RCQ
Sbjct: 652 DWDELHEEPTLESLVDRFRGNLIVETP-TSMEECDWKRVTI----GYLEFAVDGPCSRCQ 706
Query: 748 YIYIDQETALNTDVPL----GEYQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMI 799
I IDQ T + T PL E++ + + L+ N L Q+ +C+S++
Sbjct: 707 MICIDQGTGVKTTEPLRTIGREFKGKMRFGIYLS---HVNPLRDGSEQWLYCNSVV 759
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 9 |
| >sp|Q16GH0|MOCO1_AEDAE Molybdenum cofactor sulfurase 1 OS=Aedes aegypti GN=mal1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-154, Method: Compositional matrix adjust.
Identities = 297/776 (38%), Positives = 457/776 (58%), Gaps = 73/776 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ+R ++L+
Sbjct: 24 SRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQVRYRVLR 79
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT S YS+IFTSG T+++K ++E FEF EG+F+YL D+HTSVLGMRE+V T +IY
Sbjct: 80 HFNTRSSEYSLIFTSGTTASLKLLAESFEFAPEGAFVYLKDSHTSVLGMREIVGTERIYP 139
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF--- 232
+ +L E +S E +N HS SL V+PA+ NF+G KYPL + R+ +
Sbjct: 140 V---EREQLLKEL-DSSERSDN-EHS-SLIVFPAQCNFNGVKYPLELVRKIQRDGISGYG 193
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL+V +A
Sbjct: 194 KERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGALLVHHTAA 246
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
L K +YGGGTVKI+MA FH+K+D L E+FEDGT+ + +II+L GF+T+E+ S
Sbjct: 247 DQLRKKYYGGGTVKIAMAGRIFHVKRDPLVERFEDGTLAFTSIIALLQGFETLERLVPST 306
Query: 353 T----------NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
F + +Y Y K L +SN +V+LYHDT + + QG IVNFN+LH
Sbjct: 307 AGLRTIERISQQTFHIGRYCYNRLKALRHSNENAVVKLYHDTGFEDRGLQGGIVNFNILH 366
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462
+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+CGD D+
Sbjct: 367 EDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDL 426
Query: 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
IDG+PTGS+R+S+G+ + +D+ L + + ++++ +++ ++
Sbjct: 427 IDGQPTGSVRVSFGYMTRKEDIDCLLEMIEKCYIRKTIANGFTRTQIVSKYKS------- 479
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
+ + +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +GV LTQK
Sbjct: 480 -------HDQPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENGVALTQKK 532
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTV---EIGIDNEGLDLCTSKVCSDKITGFDCGN 639
+CL++P ++ N MTL + V ++ +++ + LC +KVC D + DCG+
Sbjct: 533 LAEMCLIRPQINVKTNEMTLSHPGMADFVLQLDLLGESQRIKLCQTKVCQDNVQAIDCGD 592
Query: 640 AVANWLDEQLNRKGLRLIRISK------RSSKRNINSFSNMGQYLLITLPSIQ------A 687
VA W+ L GLRL++ S + SK+ I + +N Q+LLI S++
Sbjct: 593 QVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEI-ALANQAQFLLINQASVRWLADKVP 651
Query: 688 QLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQ 747
+ L+ LE+ V+RFR N +V ++ E DW +V I G L F V C+RCQ
Sbjct: 652 DWDELHEEPTLESLVDRFRGNLIVETP-KSMEECDWKRVTI----GYLEFAVDGPCSRCQ 706
Query: 748 YIYIDQETALNTDVPL----GEYQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMI 799
I IDQ T + PL E++ + + L+ N L Q+ +C+S++
Sbjct: 707 MICIDQGTGVKATEPLRTIGREFKGKMRFGIYLS---HVNPLRDGSEQWLYCNSVV 759
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Aedes aegypti (taxid: 7159) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q14CH1|MOCOS_MOUSE Molybdenum cofactor sulfurase OS=Mus musculus GN=Mocos PE=2 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust.
Identities = 293/782 (37%), Positives = 433/782 (55%), Gaps = 91/782 (11%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
L YLD+ GA ++ QSQ+ + L EN++ +PH ++ S ++Q+R +IL +F
Sbjct: 46 LAGTVYLDHAGATLFPQSQLTNFTKDLMENVYGNPHSQNITSKLTHDTVEQVRYRILTHF 105
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVKTN 171
+T + Y VIFT+G+T+A++ V+E F + N GS F YLTDNHTSV+GMR++
Sbjct: 106 HTTPEDYIVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSVVGMRKVAAAM 165
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
+ S V E K++ + + + LF YPA+SNFSGT+YPLSW V
Sbjct: 166 SVTSIPVKPEDMWSAEGKDAGACDPDCQLPH-LFCYPAQSNFSGTRYPLSWVEEVKSG-- 222
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
++ + FVLLDAA+Y ++ LDL HQ DFI ISFYK+FG PTGLGAL+V +
Sbjct: 223 -RRSPVNAPGKWFVLLDAASYVSTSPLDLSAHQADFIPISFYKIFGLPTGLGALLVNKHV 281
Query: 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS 351
A +L K ++GGGT +A E+F++ + + E+FEDGT+++L +I+LK+GFD +E
Sbjct: 282 APLLRKGYFGGGTAAAYLAGEDFYVPRSSVAERFEDGTISFLDVIALKHGFDALEHLTGG 341
Query: 352 FTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407
N F L QYT+ L Y NG P+V +Y D+++ QG I+NFN+L G
Sbjct: 342 MVNIQQHTFALVQYTHSALSSLRYLNGAPVVRIYSDSEFSSPDVQGPIINFNVLDDGGKI 401
Query: 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467
GYS+V +A+L I LRTGC CN G+CQR LGLSD +K HFQ GH+CGDD DIIDG+P
Sbjct: 402 IGYSQVDKMASLYNIHLRTGCFCNLGACQRHLGLSDEMVKKHFQAGHVCGDDVDIIDGRP 461
Query: 468 TGSIRISYGHASNWDDVKYFLSFLNQYFL-----QQADFVSIGDICLINNQ--------- 513
TGS+RIS+G+ S +D + FL F++ +L Q SI D + ++
Sbjct: 462 TGSVRISFGYMSTLEDAQAFLRFISTIYLRSPSDQPVPQASISDAGALTSKSDCHSPQEG 521
Query: 514 -------------------------RAESSKGFFLNHSDNI----NKENKLVSIYIYPVK 544
+A S++ + + I + + +IY+YP+K
Sbjct: 522 SCTDPSVCNGSYPDTNIMDLHPSLSKASSAQQTPQDKAAGILNGDPGSHIVTNIYLYPIK 581
Query: 545 ACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCY 604
+C F+V +KW V + GL +DR WM++ H+G+ ++QK E LCL+QP D+ + IM +
Sbjct: 582 SCAAFEV-TKWPVGSQGLLYDRSWMVVNHNGICMSQKQEPRLCLIQPFIDLQQRIMVI-- 638
Query: 605 KSSGS---TVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNR------KGLR 655
K+ G V + D E +C S+VC+D++ +DCG V+ WL + L R +
Sbjct: 639 KAEGMEPIQVPLEEDGEQTQICQSRVCADRVNTYDCGENVSRWLSKFLGRLCHLIKQSPH 698
Query: 656 LIRISKRSSKRNIN-------SFSNMGQYLLITLPSIQAQLENLNA--------IFELEN 700
R ++++ K+ S N QYLL+ SI LNA F +++
Sbjct: 699 FQRNARKTPKKGQPPGTTVALSLVNEAQYLLVNTSSILELQRQLNASDEHGKEESFSMKD 758
Query: 701 FVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETA-LNT 759
++RFR+N + G A E WD++ I G L FQV C RCQ I I+Q+T N
Sbjct: 759 LISRFRANIITKGA-RAFEEEKWDEISI----GSLHFQVLGPCHRCQMICINQQTGQRNQ 813
Query: 760 DV 761
DV
Sbjct: 814 DV 815
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B0WSX1|MOCO2_CULQU Molybdenum cofactor sulfurase 2 OS=Culex quinquefasciatus GN=mal2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 519 bits (1336), Expect = e-146, Method: Compositional matrix adjust.
Identities = 273/733 (37%), Positives = 429/733 (58%), Gaps = 63/733 (8%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
LKD CYLD+ G +Y+ SQ+ + L ++F +PH + D +DQ+R ++L+
Sbjct: 23 TRLKDTCYLDHAGTTLYADSQIRAVGDCLTGSLFCNPHTSRTTEDL----LDQVRFRVLR 78
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+F T Y ++FTSG T A+K V+E F+F +EG+F+Y DNHTSVLGMR +V T +I
Sbjct: 79 HFGTHPSEYGLVFTSGTTGALKLVAECFDFGDEGAFVYTRDNHTSVLGMRAVVGTERIVP 138
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKH 235
+D R +SL V+PA+ NF+G KYPL + RN +
Sbjct: 139 IGREDLRG----------GRSTGGGKSSLVVFPAQCNFNGFKYPLGLVEDIQRNGLVG-- 186
Query: 236 FKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295
F R + V LDAA++ +N LDL +HQP F+ +SFYK+FG+PTGLGAL+V + + ++L
Sbjct: 187 FDGDRFH--VCLDAASFVSTNALDLAKHQPSFVCLSFYKIFGFPTGLGALLVHRSAQNLL 244
Query: 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK------- 348
K +YGGGTVKI+MA NFH+K+D L ++FEDGTV + +IISL GF+T+E+
Sbjct: 245 KKRYYGGGTVKIAMAGRNFHVKRDSLADQFEDGTVPFTSIISLLQGFETLERLVPASGEL 304
Query: 349 ---RKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405
+ + F L +Y + + L ++N +V+LYHDT++ + QG IVNFN+LH+DG
Sbjct: 305 SSIDRVSRHTFALGRYCFQRLRGLRHANSNSVVKLYHDTEFEDRGSQGGIVNFNVLHEDG 364
Query: 406 TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDG 465
++ G++EV +A++ + LRTGC CNPG+CQR L L+D + F GH+CGD D+I G
Sbjct: 365 SFVGFAEVAYMASVHNVVLRTGCFCNPGACQRLLELTDEDVLKQFNAGHVCGDANDLIGG 424
Query: 466 KPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNH 525
+PTGS+R+S+G+ S +DV + + + ++++ + +++N + N+
Sbjct: 425 QPTGSVRVSFGYMSRREDVDRLVEMVEKCYVKKMTANGLTRKQIVSN---------YKNY 475
Query: 526 SDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKN 585
+ KL I ++P+K+CG +K+ + W + GLK DR+++I+ +GV +TQK
Sbjct: 476 D-----QPKLKMICLFPIKSCGAYKITTSWPLCHKGLKHDREFVIVDENGVAMTQKKLVE 530
Query: 586 LCLVQPNFDITRNIMTLCYKS----SGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAV 641
+CL++P DI N + L + + + S + +++ + LC +KVC D + DCG+AV
Sbjct: 531 MCLIKPKIDIKTNTLILTHPAMENFTLSMEPLSNESQSIKLCQTKVCQDNVQAIDCGDAV 590
Query: 642 ANWLDEQLNRKGLRLIRIS---KRSSKRNIN--SFSNMGQYLLITLPSIQ------AQLE 690
ANW+ L GLRL++ S R+ +++ + SN Q+LLI S++ +
Sbjct: 591 ANWISIALQTSGLRLLKQSDDEARTLRKSTTEIALSNQAQFLLINQASVRWLADLVPDWD 650
Query: 691 NLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIY 750
+L+ LE+ V+RFR N ++ + E+ W Q+ I G L F V C+RCQ I
Sbjct: 651 DLSQEPTLESLVDRFRGNLIID-SVKPLEESSWTQLRI----GPLEFSVDGPCSRCQMIC 705
Query: 751 IDQETALNTDVPL 763
IDQ + T PL
Sbjct: 706 IDQSSGTRTAEPL 718
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Culex quinquefasciatus (taxid: 7176) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q96EN8|MOCOS_HUMAN Molybdenum cofactor sulfurase OS=Homo sapiens GN=MOCOS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/792 (36%), Positives = 435/792 (54%), Gaps = 106/792 (13%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ L YLD+ GA ++SQSQ+ L EN + +PH ++ S ++Q+R +IL
Sbjct: 44 SRLAGTVYLDHAGATLFSQSQLESFTSDLMENTYGNPHSQNISSKLTHDTVEQVRYRILA 103
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVK 169
+F+T ++ Y+VIFT+G+T+A+K V+E F + + GS F YLTD+HTSV+GMR +
Sbjct: 104 HFHTTAEDYTVIFTAGSTAALKLVAEAFPWVSQGPESSGSRFCYLTDSHTSVVGMRNVTM 163
Query: 170 TNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229
+ S V E + + + + + + LF YPA+SNFSG +YPLSW V
Sbjct: 164 AINVISTPVRPEDLWSAEERSASASNPDCQLPH-LFCYPAQSNFSGVRYPLSWIEEVKSG 222
Query: 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289
+ H + FVLLDAA+Y ++ LDL HQ DF+ ISFYK+FG+PTGLGAL+V
Sbjct: 223 RL---HPVSTPGKWFVLLDAASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALLVHN 279
Query: 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349
++A +L KT++GGGT +A E+F+I + + ++FEDGT+++L +I+LK+GFDT+E+
Sbjct: 280 RAAPLLRKTYFGGGTASAYLAGEDFYIPRQSVAQRFEDGTISFLDVIALKHGFDTLERLT 339
Query: 350 KSFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405
N F L+QYTY L Y NG P+V +Y D+++ + QG I+NFN+L G
Sbjct: 340 GGMENIKQHTFTLAQYTYVALSSLQYPNGAPVVRIYSDSEFSSPEVQGPIINFNVLDDKG 399
Query: 406 TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDG 465
GYS+V +A+L I LRTGC CN G+CQR LG+S+ ++ HFQ GH+CGD+ D+IDG
Sbjct: 400 NIIGYSQVDKMASLYNIHLRTGCFCNTGACQRHLGISNEMVRKHFQAGHVCGDNMDLIDG 459
Query: 466 KPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ----------QADFVSIGD--------- 506
+PTGS+RIS+G+ S DDV+ FL F+ L AD G
Sbjct: 460 QPTGSVRISFGYMSTLDDVQAFLRFIIDTRLHSSGDWPVPQAHADTGETGAPSADSQADV 519
Query: 507 ICLINNQRAESSKGFFLNHSDNINKENKLVSIYIYP------------------------ 542
I + +R+ S + L S N + + ++ + P
Sbjct: 520 IPAVMGRRSLSPQEDALTGSRVWNNSSTVNAVPVAPPVCDVARTQPTPSEKAAGVLEGAL 579
Query: 543 ------------VKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQ 590
+K+C F+V ++W V GL +DR WM++ H+GV L+QK E LCL+Q
Sbjct: 580 GPHVVTNLYLYPIKSCAAFEV-TRWPVGNQGLLYDRSWMVVNHNGVCLSQKQEPRLCLIQ 638
Query: 591 PNFDITRNIMTLCYKSSG-STVEIGID--NEGLDLCTSKVCSDKITGFDCGNAVANWLDE 647
P D+ + IM + K+ G +E+ ++ +E + S+VC+D+++ +DCG +++WL
Sbjct: 639 PFIDLRQRIMVI--KAKGMEPIEVPLEENSERTQIRQSRVCADRVSTYDCGEKISSWLST 696
Query: 648 QLNRKGLRLIRISKRSSKRNIN---------------SFSNMGQYLLITLPSIQAQLENL 692
R LI+ S +S+RN S N QYLLI SI L
Sbjct: 697 FFGRP-CHLIKQSS-NSQRNAKKKHGKDQLPGTMATLSLVNEAQYLLINTSSILELHRQL 754
Query: 693 NA--------IFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCT 744
N +F L++ RFR+N +++G+ A E WD++ I G L FQV C
Sbjct: 755 NTSDENGKEELFSLKDLSLRFRANIIINGK-RAFEEEKWDEISI----GSLRFQVLGPCH 809
Query: 745 RCQYIYIDQETA 756
RCQ I IDQ+T
Sbjct: 810 RCQMICIDQQTG 821
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. In vitro, the C-terminal domain is able to reduces N-hydroxylated prodrugs, such as benzamidoxime. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q8IU29|MOCOS_BOMMO Molybdenum cofactor sulfurase OS=Bombyx mori GN=mal PE=2 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1274), Expect = e-139, Method: Compositional matrix adjust.
Identities = 292/765 (38%), Positives = 443/765 (57%), Gaps = 71/765 (9%)
Query: 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY 117
L D CYLD GA +Y +S + E L +N++ +PH + D+ I+Q+R IL++
Sbjct: 22 RLGDRCYLDNAGATLYPKSLITSINEDLLKNVYMNPHTDKNTKDY----IEQIRCLILKH 77
Query: 118 FNTDSDHYSVIFTSGATSAIKTVSEYFEF--------NEGSFIYLTDNHTSVLGMRELV- 168
FNTD Y++IFTSG T A+K V E F+F N GSF+YL DNHTSV+G+REL
Sbjct: 78 FNTDPSTYTLIFTSGTTQALKLVIESFQFMKNEDDDLNCGSFVYLEDNHTSVVGLRELAV 137
Query: 169 -KTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227
K ++ + +D N++N ++++ + N L YPA+SNF+G KYPL+ +
Sbjct: 138 DKDAEVVHIAHEDFLNVIN--TKAKQTSKYTNGGNCLVAYPAQSNFNGFKYPLNCIENIK 195
Query: 228 R---NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGA 284
N+ KKH S+ +VLLDAA Y ++ LDL + QPDF+S+SFYK+FG+PTGLGA
Sbjct: 196 NGCLNNHLKKHLCEINSDWYVLLDAAAYVATSKLDLAKVQPDFVSLSFYKIFGFPTGLGA 255
Query: 285 LIVKQKSAHVLN-KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343
L+VK+ S +VL+ K ++GGGTV ++NE++HIK++ E+FEDG++++L+IISLK D
Sbjct: 256 LLVKKSSENVLSQKRYFGGGTVDALLSNEHYHIKREIFHERFEDGSLSFLSIISLKQCLD 315
Query: 344 TMEK--KRKSFTNAFELSQYTYFYFKQ--------LSYSNGQPLVELYHDTDYGESKYQG 393
TM + R + E Y FY + L + NG ++ Y D+D+ + QG
Sbjct: 316 TMYRIIPRIIHDDIMETISYHTFYLAKDLYCQLLDLRHRNGTKAIKFYLDSDFSDITKQG 375
Query: 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453
++ FNL+ +DGTY G+SE Q++A+L I +RTGC CN GSCQR L +S+ +K + G
Sbjct: 376 GVLTFNLVREDGTYIGFSEFQHMADLFNISVRTGCFCNSGSCQRHLHMSNKDMKDMYNAG 435
Query: 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA---------DFVSI 504
H CGD+ D+I+ KPTG+IRIS+G+ + ++DV F++ + + F+ FV
Sbjct: 436 HRCGDEVDLINEKPTGAIRISFGYYNTFEDVDKFVNMICRCFVNAKARKQKRIINHFVET 495
Query: 505 GDICLINN--QRAESSKGFFLNHSD---NINKENK---LVSIYIYPVKACGFFKVESKWE 556
I N + + + +F N D NI + L I I+P+K+CG FK+ S W
Sbjct: 496 PKIKHYNGNVNKIINEQIYFKNVDDVLINIPPMSTKIILKEICIFPIKSCGAFKILSGWN 555
Query: 557 VTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGID 616
+ G ++DR+WMI+ +GV LTQK +C+++P D+ + +M L + + + I ++
Sbjct: 556 IGPKGFEYDREWMIVKDNGVCLTQKQNTRMCMIRPQIDLKQKVMILNFPGK-TPISIPLE 614
Query: 617 N------EGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKR---- 666
N + LC SKVC+D I G DCG+ VA+W+ E L LRLIR S ++
Sbjct: 615 NSINEVQKNGSLCHSKVCTDMIKGIDCGDEVADWISEALEVSFLRLIRQSSNDNRSLKKK 674
Query: 667 -----NINSFSNMGQYLLITLPSIQAQLENL-NAIF--ELENFVNRFRSNFVVSGQFEAN 718
+ S SN QYLLI +++ E + + +F +L + +RFR N ++ + E
Sbjct: 675 KDEDKKLLSLSNQAQYLLINKATVKWLSEKIKDPLFTDDLNHLTDRFRGNLIIEMEQEL- 733
Query: 719 AENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
E +W V+I G F+V QC RCQ + IDQ+T T PL
Sbjct: 734 LEREWHSVII----GNHEFKVEGQCPRCQMVCIDQQTGEKTVEPL 774
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Bombyx mori (taxid: 7091) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q7QFL7|MOCOS_ANOGA Molybdenum cofactor sulfurase OS=Anopheles gambiae GN=mal PE=3 SV=5 | Back alignment and function description |
|---|
Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust.
Identities = 268/742 (36%), Positives = 420/742 (56%), Gaps = 68/742 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ L D CYLD+ G +Y +SQ+ E L ++ +PH + + D ID +R ++L+
Sbjct: 20 SRLADKCYLDHAGTALYGESQLRAVQELLAGGLYCNPHTSRTMEDL----IDLVRYRVLR 75
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-----SFIYLTDNHTSVLGMRELVKTN 171
+F T YS++FTSG T+++K V+E FEF G SF+YL D+HTSVLGMRELV+T
Sbjct: 76 WFQTRPADYSLVFTSGTTASLKLVAESFEFGPGDAEPGSFVYLRDSHTSVLGMRELVRTG 135
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
++ + +L E ++ H SL V+PA+ NF+G KYPL C + RN +
Sbjct: 136 RVQPI---ERAELLQALNEPEDPRRQHPHRPSLLVFPAQCNFNGAKYPLELCELIERNGL 192
Query: 232 FKKHFKCSRSNCF-VLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290
+ + F V LDAA++ ++ LDL +++P F+ +SFYK+FGYPTGLGAL+V++
Sbjct: 193 -----RGYGGDAFHVCLDAASHVSTSPLDLSRYRPSFVCLSFYKIFGYPTGLGALLVRRD 247
Query: 291 SAHVLN-KTFYGGGTVKISMAN-ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348
+ +L K +YGGGTVKI+++ + FH ++D L ++ EDGT+N+L+I +L +T+ +
Sbjct: 248 AEPLLRGKRYYGGGTVKIALSGPDRFHERRDALPDRLEDGTINFLSIAALLPCLETLTRL 307
Query: 349 RKSFT------NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
T + F+L+++ Y + L ++NG +V+LYHDT +G+++ QG IVNFN+L+
Sbjct: 308 IPGPTMDRIQRHTFQLARHCYRELQALQHANGGRVVDLYHDTAFGDARTQGAIVNFNVLN 367
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462
DG + G++EV +A I LRTGC CNPG+CQR L L+D + H++ GH+CGD D+
Sbjct: 368 DDGGHVGFAEVACMAANHGIYLRTGCFCNPGACQRHLRLADDDLLRHYRAGHVCGDANDL 427
Query: 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
IDG+PTGS+R+S+G+ + DV ++ + + +++++ + S+
Sbjct: 428 IDGQPTGSVRVSFGYCTRRSDVDRLVAMVRRCYVRRSLTGPL-------------SRADV 474
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESK-WEVTASGLKFDRQWMIITHSGVPLTQK 581
L + ++ +LV + +YPVK+CG +V + W + +GL +DR ++I+ G +TQK
Sbjct: 475 LAQYKSYDRP-RLVQLCLYPVKSCGPLRVTTGGWPLAPTGLLYDRAFLIVDEHGAAMTQK 533
Query: 582 LEKNLCLVQPNFDITRNIMTLCYKS-SGSTVEIGIDNEGLD-------LCTSKVCSDKIT 633
+C ++P DI + L + + IG++ G LC +KVC D +
Sbjct: 534 KLPTMCRIRP--DIADGRLVLRHADLEDEPLTIGLEGGGEAGEPAAAHLCQTKVCRDSVQ 591
Query: 634 GFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNIN-----SFSNMGQYLLITLPSIQAQ 688
G DCG A+W+ L GLRL+R S + +R S +N Q LLI S++
Sbjct: 592 GVDCGERAADWVSRALGVSGLRLLRQSGQEPRRQRQTDRALSLNNQAQLLLINRTSVRWL 651
Query: 689 LENLN-------AIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTS 741
+ + L+ V+RFR N +V E+DW QVLI G F V
Sbjct: 652 RDKVGDGDWDGADAPSLDALVDRFRGNLIVE-TVRPLEESDWRQVLI----GPSQFTVDG 706
Query: 742 QCTRCQYIYIDQETALNTDVPL 763
CTRCQ I IDQ T T PL
Sbjct: 707 PCTRCQMICIDQATGERTAEPL 728
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Anopheles gambiae (taxid: 7165) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|A2VD33|MOCOS_DANRE Molybdenum cofactor sulfurase OS=Danio rerio GN=mocos PE=2 SV=2 | Back alignment and function description |
|---|
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 282/756 (37%), Positives = 420/756 (55%), Gaps = 64/756 (8%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
+K + YLD+ G ++ +S + + + N++ +PH ++ S ++ +R KIL +F
Sbjct: 42 IKGVTYLDHAGTTLFPESLIKGFHDDISRNVYGNPHSHNSSSRLTHDTVESVRYKILAHF 101
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-------FIYLTDNHTSVLGMRELVKTN 171
NT + YSVIFTSG T+A+K V++ F + S F YLTDNHTSV+G+R
Sbjct: 102 NTSPEDYSVIFTSGCTAALKLVADTFPWKPMSNKEPGSQFCYLTDNHTSVVGIRGATALQ 161
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
+ + SV ++Q N E + LF YPA+SNFSG KY LS+ + +
Sbjct: 162 GVGTISVSPREVETRARNKTQTNGEEECSTPHLFCYPAQSNFSGRKYSLSYVKGIQSQQL 221
Query: 232 FKKHFKCSR-SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290
+ C FVLLDAA + + LDL Q+ DF+ ISFYKMFG+PTGLGAL+V+ +
Sbjct: 222 YPA---CEHHGQWFVLLDAACFVSCSPLDLSQYPADFVPISFYKMFGFPTGLGALLVRNE 278
Query: 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350
+A VL KT++GGGT + EN+ I K L +FEDGT+++L IISL +GF+T++K
Sbjct: 279 AAEVLRKTYFGGGTAAAYLVEENYFIPKPNLASRFEDGTISFLDIISLHHGFETLQKLTG 338
Query: 351 SFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406
S TN F L++YTY L +SNG+ + ++Y D D+ QG I+NF+LL G
Sbjct: 339 SMTNIQLHTFGLARYTYTVLSCLCHSNGKHVAQIYCDNDFQSIAEQGAIINFSLLDCHGR 398
Query: 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGK 466
GYS+V +A+L I +RTGC CN G+CQ +L +S+ +K + GHICGD+ D++DG+
Sbjct: 399 TVGYSQVDKMASLFNIHIRTGCFCNTGACQHYLAISNQNVKSNLHAGHICGDNIDLVDGR 458
Query: 467 PTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNHS 526
PTGS+R+S+G+ S+++D + FL F+ F+ + + + +N+ +
Sbjct: 459 PTGSLRVSFGYMSSFEDCQNFLRFVVNCFVDKPLILDQTKLAKLNSAAPIEPSSSYSPSP 518
Query: 527 D-------NINKENK-------LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIIT 572
D ++K+ K L +++I+PVK+C F+V ++W + GL +DR WM++
Sbjct: 519 DRMAVSEVTMSKDGKKDGSSCTLTNLFIFPVKSCASFEV-TEWPLGPQGLLYDRLWMVVN 577
Query: 573 HSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGS---TVEIGIDNEGLDLCT--SKV 627
+GV L+QK E LCL+QP + N + L + SGS TV + E DL T SKV
Sbjct: 578 ENGVCLSQKREPKLCLIQPVVCLAANTLKL--QISGSEAITVPLDPSLEKSDLRTSQSKV 635
Query: 628 CSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNIN-----------SFSNMGQ 676
C D++ DCG V+ WL E L K RLIR + R++ S N Q
Sbjct: 636 CGDRVQTVDCGEEVSAWLSEFLG-KPCRLIR-QRPEFLRDMKFGQGDCCPTPLSLVNEAQ 693
Query: 677 YLLITLPSI---------QAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVL 727
+LLI S+ + +N + E V RFR+N V+S Q E AE++W +
Sbjct: 694 FLLINRASVCFLQEAIANRYNSDNEETWRDTEQLVQRFRANLVISAQ-EPFAEDNWSHLT 752
Query: 728 IETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
I G FQV +C RCQ I +DQ+TA T PL
Sbjct: 753 I----GNTQFQVIGKCGRCQMIGVDQKTATRTQEPL 784
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B4L340|MOCOS_DROMO Molybdenum cofactor sulfurase OS=Drosophila mojavensis GN=mal PE=3 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 270/758 (35%), Positives = 421/758 (55%), Gaps = 79/758 (10%)
Query: 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY 117
L + YLD+ G +Y++SQ+ +QL+ ++ +PH D+ +DQ+R +IL++
Sbjct: 22 RLGESTYLDHAGTTLYAESQVLSAAQQLQRDVICNPHTCRATGDY----VDQVRYRILEF 77
Query: 118 FNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGSFIYLTDNHTSVLGMRELVKTNQIYSF 176
FNT++D Y V+FT+ AT+A++ V+++F+F +G+F Y +NHTSVLGMR+LVK IY
Sbjct: 78 FNTNADDYHVVFTANATAALRLVADHFDFAGDGNFHYCQENHTSVLGMRQLVKAKGIYML 137
Query: 177 SVDDAR-NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKH 235
+ DD N+L++ +NSL + A+ NFSG K PL+ + + + ++
Sbjct: 138 TKDDIELNVLDQPSTPAPAAAATAQANSLVTFSAQCNFSGYKMPLTVIEQIQKRGL-QQL 196
Query: 236 FKC------------SRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283
KC SN +V LDAA + S+ LDL++ +PDF+ +SFYK+FGYPTG+G
Sbjct: 197 GKCIWSAESQPAAKNVDSNYYVCLDAAAFAASSPLDLQRFRPDFVCVSFYKIFGYPTGVG 256
Query: 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343
L+V ++ A VL K FYGGGT+ + + H ++ E+FEDGT+ +L+I+ L GF
Sbjct: 257 GLLVSRRGAEVLRKRFYGGGTINYAYPHTMEHQLRNVFHERFEDGTLPFLSIVELLQGFR 316
Query: 344 TMEK-------KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396
T+E+ +R S + L++Y KQL + NG PL+ LY+ Y + QG V
Sbjct: 317 TLERLVPGRSIERIS-RHVHGLARYCEHQLKQLKHPNGAPLITLYNHAGYEDRAKQGGTV 375
Query: 397 NFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ-GHI 455
FN+ G Y G+ EV +A L +I LRTGC CN G+CQ FL L+D T+ +++ G I
Sbjct: 376 AFNVRTNTGDYVGFGEVACMAALHRILLRTGCFCNVGACQHFLQLNDETMDAIYKRAGRI 435
Query: 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL------QQADFVSIGDICL 509
CGD D++DG+PTG++R+S+G+ + DV FL L +L Q+ F+
Sbjct: 436 CGDYFDLLDGQPTGAVRVSFGYMTRIQDVDRFLQMLRNSYLVIAKPQQRFSFI------- 488
Query: 510 INNQRAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVES---KWEVTASGLKFDR 566
Q+AE + + +L+ + IYPVK+C FK++S W +T GL++DR
Sbjct: 489 --EQQAELLPKALQQRAQRLRP--RLLQLAIYPVKSCAAFKIDSSTGSWPLTKQGLQYDR 544
Query: 567 QWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLD--LCT 624
+WMI+ +G+ LTQK +LCL+QP I + + L Y + ++ + + + + C
Sbjct: 545 EWMIVDMNGMALTQKRCTDLCLIQPR--IVGDQLELHYAETSCSMPLSLSVQAANSARCH 602
Query: 625 SKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNIN----SFSNMGQYLLI 680
SKVC I G+DCG+ VA WL + L +G+RL+R S + S S N Q+LL+
Sbjct: 603 SKVCRQAIEGYDCGDEVATWLSQSLGLEGVRLLRQSAQRSAPGTQQQQLSLVNQAQFLLV 662
Query: 681 TLPSIQA-QLENLNAIFELENFVNRFRSNFVV--SGQFEANAENDWDQVLIETNDGLLSF 737
S+++ Q E L+ V+RFR+N ++ FE E + Q+ I G + F
Sbjct: 663 NRASVRSLQFEE-----SLDETVDRFRANIIIDTGTPFE---ELTYTQLRI----GDILF 710
Query: 738 QVTSQCTRCQYIYIDQETALNTDVPLGEYQTRNFSTVS 775
QV C RC I I+Q T GE +T++
Sbjct: 711 QVDGPCQRCDMICINQRT--------GERSPETLTTIA 740
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Drosophila mojavensis (taxid: 7230) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
| >sp|B4M3C9|MOCOS_DROVI Molybdenum cofactor sulfurase OS=Drosophila virilis GN=mal PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 274/761 (36%), Positives = 421/761 (55%), Gaps = 80/761 (10%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ L D YLD+ G +Y++SQ++ +QL+ ++ +PH D+ +DQ+R +IL+
Sbjct: 21 SRLADSTYLDHAGTTLYAESQVSAAAQQLQRDVICNPHTCRATGDY----VDQVRYRILE 76
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT +D Y V+FT+ AT+A++ V+E+F+F +G+F Y +NHTSVLGMR+LVK +IY+
Sbjct: 77 FFNTSADDYHVVFTANATAALRLVAEHFDFGKDGNFHYCQENHTSVLGMRQLVKAKRIYA 136
Query: 176 FSVDDARNMLNEFKES--QENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFK 233
+ D +LN+ + H NSL V+ A+ NFSG K PL+ + + +
Sbjct: 137 LNKDSI--VLNDVEGPVAPAAATGAAHGNSLVVFSAQCNFSGYKLPLTVIEKIQ-SRGMQ 193
Query: 234 KHFKC-------------SRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPT 280
+ KC + +N +V LDAA++ S+ LDL++++PDF+ +SFYK+FGYPT
Sbjct: 194 QLGKCIWTEPAGERVNNTNNNNYYVCLDAASFAASSPLDLQRYRPDFVCLSFYKIFGYPT 253
Query: 281 GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340
G+GAL+V ++ A VL K FYGGGT+ + + H + E+FEDGT+ +L+I+ L
Sbjct: 254 GVGALLVSKRGADVLRKRFYGGGTINYAYPHTMEHQLRSTFHERFEDGTLPFLSIVELLQ 313
Query: 341 GFDTMEK------KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGN 394
GF T+E+ + + L++Y KQL + NG PLV LY+ YG+ QG
Sbjct: 314 GFRTLERLVPGRSMERISRHVHGLARYCEQQLKQLQHPNGAPLVTLYNHAGYGDLAKQGG 373
Query: 395 IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ-G 453
IV FN+ G Y G+ EV +A L +I LRTGC CN G+CQ FL L+D T+ +++ G
Sbjct: 374 IVAFNVRTDAGDYVGFGEVACVAALHRILLRTGCFCNLGACQHFLQLNDDTMDAIYKRAG 433
Query: 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ---QADFVSIGDICLI 510
ICGD D++DG+PTG++R+S+G+ + DV+ L L ++ Q F I
Sbjct: 434 RICGDYYDLLDGQPTGAVRVSFGYMTRAQDVERLLQMLRASYIHSKPQQRFSFI------ 487
Query: 511 NNQRAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESK---WEVTASGLKFDRQ 567
Q+AE + + +L+ + IYPVK+C FK+E W +T GL++DR+
Sbjct: 488 -EQQAELLPKVLQQRAQRLRP--RLLQLAIYPVKSCAAFKIERDAVCWPLTHQGLQYDRE 544
Query: 568 WMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTL--CYKSSGS----TVEIGIDNEGLD 621
WMI+ +G+ LTQK +LCLVQP + R+ + L C +S S + + +
Sbjct: 545 WMIVDINGMALTQKRCTDLCLVQPR--VVRDQLELHFCGANSESFCSVPLSLSVQAANSA 602
Query: 622 LCTSKVCSDKITGFDCGNAVANWLDEQ----LNRKGLRLIRISKRSSKRNINSFSNMGQY 677
C SKVC I G+DCG+ VA WL +Q R + + S S++ S N Q+
Sbjct: 603 RCRSKVCRQPIEGYDCGDEVATWLSQQLGLEGLRLLRQSAQRSAPGSQQQQLSLVNQAQF 662
Query: 678 LLITLPSIQA-QLENLNAIFELENFVNRFRSNFVVSG--QFEANAENDWDQVLIETNDGL 734
LL+ S+++ Q E L+ V+RFR+N V+ FE E + Q+ I G
Sbjct: 663 LLVNRASVRSLQFEE-----ALDETVDRFRANIVIDTGMPFE---ELAYAQLRI----GD 710
Query: 735 LSFQVTSQCTRCQYIYIDQETALNTDVPLGEYQTRNFSTVS 775
+ FQV C RC I I+Q T GE +T++
Sbjct: 711 VLFQVDGPCQRCDMICINQRT--------GERSPETLTTIA 743
|
Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form. Drosophila virilis (taxid: 7244) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 815 | ||||||
| 157130261 | 764 | hypothetical protein AaeL_AAEL011729 [Ae | 0.862 | 0.920 | 0.390 | 1e-154 | |
| 157104924 | 764 | hypothetical protein AaeL_AAEL014381 [Ae | 0.862 | 0.920 | 0.382 | 1e-152 | |
| 383855946 | 822 | PREDICTED: molybdenum cofactor sulfurase | 0.871 | 0.863 | 0.402 | 1e-150 | |
| 328780894 | 831 | PREDICTED: molybdenum cofactor sulfurase | 0.852 | 0.836 | 0.395 | 1e-149 | |
| 380015092 | 834 | PREDICTED: molybdenum cofactor sulfurase | 0.878 | 0.858 | 0.388 | 1e-149 | |
| 156554568 | 818 | PREDICTED: molybdenum cofactor sulfurase | 0.844 | 0.841 | 0.398 | 1e-148 | |
| 348576551 | 873 | PREDICTED: molybdenum cofactor sulfurase | 0.853 | 0.797 | 0.369 | 1e-148 | |
| 350419990 | 825 | PREDICTED: molybdenum cofactor sulfurase | 0.855 | 0.844 | 0.393 | 1e-147 | |
| 91077036 | 767 | PREDICTED: similar to molybdenum cofacto | 0.828 | 0.880 | 0.404 | 1e-147 | |
| 242014503 | 796 | molybdopterin cofactor sulfurase, putati | 0.828 | 0.847 | 0.398 | 1e-147 |
| >gi|157130261|ref|XP_001661859.1| hypothetical protein AaeL_AAEL011729 [Aedes aegypti] gi|122105138|sp|Q16P90.1|MOCO3_AEDAE RecName: Full=Molybdenum cofactor sulfurase 3; Short=MOS 3; Short=MoCo sulfurase 3; AltName: Full=Molybdenum cofactor sulfurtransferase 3; AltName: Full=Protein maroon-like 3; Short=Ma-l 3 gi|108871953|gb|EAT36178.1| AAEL011729-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 303/776 (39%), Positives = 457/776 (58%), Gaps = 73/776 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ+R ++L+
Sbjct: 24 SRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQVRYRVLR 79
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT S YS+IFTSG T+++K ++E +EF EG+F+YL D+HTSVLGMRE+V T +IY
Sbjct: 80 HFNTRSSEYSLIFTSGTTASLKLLAESYEFAPEGAFVYLKDSHTSVLGMREIVGTERIYP 139
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF--- 232
+ +L E S+ + + HS SL V+PA+ NF+G KYPL + RN +
Sbjct: 140 V---EREQLLKELDSSERS--DSEHS-SLIVFPAQCNFNGVKYPLELVRKIQRNGISGYG 193
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL+V +A
Sbjct: 194 KERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGALLVHHTAA 246
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
L K +YGGGTVKI+MA NFH+K+D L E+FEDGT+ + +II+L GF+T+E+ S
Sbjct: 247 DQLRKKYYGGGTVKIAMAGRNFHVKRDPLVERFEDGTLAFTSIIALLQGFETLERLVPST 306
Query: 353 T----------NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
F L +Y Y K L +SNG +V+LYHDT + + QG IVNFN+LH
Sbjct: 307 AGLRTIERISQQTFHLGRYCYNRLKALRHSNGNAVVKLYHDTGFEDQGLQGGIVNFNILH 366
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462
+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+CGD D+
Sbjct: 367 EDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDL 426
Query: 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
IDG+PTGS+R+S+G+ + +D+ L + + ++++ ++ G Q K +
Sbjct: 427 IDGQPTGSVRVSFGYMTRKEDIDCLLEMVEKCYIRKT--IANG---FTRTQIVSKYKSY- 480
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
+ +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +GV LTQK
Sbjct: 481 --------DQPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENGVALTQKK 532
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGI---DNEGLDLCTSKVCSDKITGFDCGN 639
+CL++P ++ N MTL + S V +++ + LC +KVC D + DCG+
Sbjct: 533 LTEMCLIRPQINLKTNEMTLSHPSMDDFVLDLDLLGESQRIKLCQTKVCQDNVQAIDCGD 592
Query: 640 AVANWLDEQLNRKGLRLIRISK------RSSKRNINSFSNMGQYLLITLPSIQ------A 687
VA W+ L GLRL++ S + SK+ I + +N Q+LLI S++
Sbjct: 593 QVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEI-ALANQAQFLLINQASVRWLADKVP 651
Query: 688 QLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQ 747
+ L+ LE+ V+RFR N +V + E DW +V I G L F V C+RCQ
Sbjct: 652 DWDELHEEPTLESLVDRFRGNLIVETP-TSMEECDWKRVTI----GYLEFAVDGPCSRCQ 706
Query: 748 YIYIDQETALNTDVPL----GEYQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMI 799
I IDQ T + T PL E++ + + L+ N L Q+ +C+S++
Sbjct: 707 MICIDQGTGVKTTEPLRTIGREFKGKMRFGIYLS---HVNPLRDGSEQWLYCNSVV 759
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157104924|ref|XP_001648634.1| hypothetical protein AaeL_AAEL014381 [Aedes aegypti] gi|122116404|sp|Q16GH0.1|MOCO1_AEDAE RecName: Full=Molybdenum cofactor sulfurase 1; Short=MOS 1; Short=MoCo sulfurase 1; AltName: Full=Molybdenum cofactor sulfurtransferase 1; AltName: Full=Protein maroon-like 1; Short=Ma-l 1 gi|108869104|gb|EAT33329.1| AAEL014381-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 297/776 (38%), Positives = 457/776 (58%), Gaps = 73/776 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ+R ++L+
Sbjct: 24 SRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQVRYRVLR 79
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT S YS+IFTSG T+++K ++E FEF EG+F+YL D+HTSVLGMRE+V T +IY
Sbjct: 80 HFNTRSSEYSLIFTSGTTASLKLLAESFEFAPEGAFVYLKDSHTSVLGMREIVGTERIYP 139
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF--- 232
+ +L E +S E +N HS SL V+PA+ NF+G KYPL + R+ +
Sbjct: 140 V---EREQLLKEL-DSSERSDN-EHS-SLIVFPAQCNFNGVKYPLELVRKIQRDGISGYG 193
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL+V +A
Sbjct: 194 KERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGALLVHHTAA 246
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
L K +YGGGTVKI+MA FH+K+D L E+FEDGT+ + +II+L GF+T+E+ S
Sbjct: 247 DQLRKKYYGGGTVKIAMAGRIFHVKRDPLVERFEDGTLAFTSIIALLQGFETLERLVPST 306
Query: 353 T----------NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
F + +Y Y K L +SN +V+LYHDT + + QG IVNFN+LH
Sbjct: 307 AGLRTIERISQQTFHIGRYCYNRLKALRHSNENAVVKLYHDTGFEDRGLQGGIVNFNILH 366
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462
+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+CGD D+
Sbjct: 367 EDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDL 426
Query: 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
IDG+PTGS+R+S+G+ + +D+ L + + ++++ +++ ++
Sbjct: 427 IDGQPTGSVRVSFGYMTRKEDIDCLLEMIEKCYIRKTIANGFTRTQIVSKYKS------- 479
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
+ + +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +GV LTQK
Sbjct: 480 -------HDQPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENGVALTQKK 532
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTV---EIGIDNEGLDLCTSKVCSDKITGFDCGN 639
+CL++P ++ N MTL + V ++ +++ + LC +KVC D + DCG+
Sbjct: 533 LAEMCLIRPQINVKTNEMTLSHPGMADFVLQLDLLGESQRIKLCQTKVCQDNVQAIDCGD 592
Query: 640 AVANWLDEQLNRKGLRLIRISK------RSSKRNINSFSNMGQYLLITLPSIQ------A 687
VA W+ L GLRL++ S + SK+ I + +N Q+LLI S++
Sbjct: 593 QVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEI-ALANQAQFLLINQASVRWLADKVP 651
Query: 688 QLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQ 747
+ L+ LE+ V+RFR N +V ++ E DW +V I G L F V C+RCQ
Sbjct: 652 DWDELHEEPTLESLVDRFRGNLIVETP-KSMEECDWKRVTI----GYLEFAVDGPCSRCQ 706
Query: 748 YIYIDQETALNTDVPL----GEYQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMI 799
I IDQ T + PL E++ + + L+ N L Q+ +C+S++
Sbjct: 707 MICIDQGTGVKATEPLRTIGREFKGKMRFGIYLS---HVNPLRDGSEQWLYCNSVV 759
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383855946|ref|XP_003703471.1| PREDICTED: molybdenum cofactor sulfurase-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 319/793 (40%), Positives = 458/793 (57%), Gaps = 83/793 (10%)
Query: 35 PVYTEPPIKTKFGYHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPH 94
PVY E +K +F + +K+ CYLD+ GA +YS +Q+ L +++++PH
Sbjct: 13 PVYDEQIVK-RFENEF------SRIKEECYLDHAGATLYSDTQIKNIAADLHHSLYANPH 65
Query: 95 GNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE------ 148
S+ I++MR IL +F+T S+ YSVIFTSGAT ++K V++ F F++
Sbjct: 66 SIGGASNITQDIIERMRYLILNHFHTSSEEYSVIFTSGATESLKIVADTFLFHKDQTTNV 125
Query: 149 ----GSFIYLTDNHTSVLGMRELV--KTNQIYSFSVDDARNMLNEFKESQENVENMRHSN 202
G F+Y DNHTSVLGMRE+V + +I S D+A +LN + + + + + SN
Sbjct: 126 LSSSGHFVYTQDNHTSVLGMREVVVKRGVKITCLSHDNAFKILN-YPLNPLSSCSQQDSN 184
Query: 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262
SLFVY A+ NFSG KYPL W VH + V + + +VLLDAA + +N LDL
Sbjct: 185 SLFVYSAQCNFSGLKYPLKWIKNVH-DGVLSNTVNDTSTKWYVLLDAAGFASTNDLDLST 243
Query: 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322
+PDF+S+SFYKMFGYPTG+GAL+VK SA VL K +YGGGTV +S+++E +H+K+ L
Sbjct: 244 FKPDFVSLSFYKMFGYPTGIGALLVKNSSADVLQKVYYGGGTVDVSLSSEMYHVKRKSLH 303
Query: 323 EKFEDGTVNYLAIISLKYGFD-----TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL 377
E+FEDGTV +L+IISL++GFD TME K + F L+++ Y L +SNGQP+
Sbjct: 304 ERFEDGTVPFLSIISLRHGFDILSSITMEAISK---HVFSLAKFLYKSLLMLHHSNGQPV 360
Query: 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQR 437
V+LY DT Y + QG I+ FNL+ +G Y GY EV ++A L KI LRTGC CNPG+CQR
Sbjct: 361 VKLYSDTVYEDCNLQGGIIAFNLIRSNGEYVGYMEVLHVAALFKIHLRTGCFCNPGACQR 420
Query: 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497
L LS+ I ++ G++CG D+I+GKPTG++R+S+G+ S DV+ L + +YF+
Sbjct: 421 HLTLSNNDILQNYDSGYVCGGATDLINGKPTGAVRVSFGYMSTLKDVQTLLHMIEEYFVD 480
Query: 498 QADFVSIGDICL-------------------INN-------QRAESSKGFFLNHS----- 526
+ + L NN Q + S F+N +
Sbjct: 481 KPQIKKVPAWWLEYKTTLNEKYYYHNTSTKDTNNDTRNNTLQNIKESVSHFINDNRFLKL 540
Query: 527 ---DNIN-KENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
+NI+ KE L +YIYP+K+C +++ W + + GL++DR+WMI++ SG LTQK
Sbjct: 541 MVYNNISKKECILEQLYIYPIKSCAAYRIAGSWNLNSKGLQYDREWMIVSSSGTCLTQKQ 600
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGL-----DLCTSKVCSDKITGFDC 637
NLCL++P D R IM L Y + +++ + N+ + +C S+VC K+ G DC
Sbjct: 601 HINLCLLKPIIDQERGIMQLNYPGVAA-IDVPLHNDSVRTVEGTICQSRVCGHKVEGIDC 659
Query: 638 GNAVANWLDEQLNRKGLRLIRIS-----KRSSKRNINSFSNMGQYLLITLPSIQAQLENL 692
G+ V+ WL L LRLIR S K+ + + SFS+ QYLLI S+ L N
Sbjct: 660 GSDVSEWLSLALGLPNLRLIRQSDNDHNKKGNNKPELSFSSQAQYLLINKASV-LWLANR 718
Query: 693 NAIFEL--ENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIY 750
+ E+ E ++RFR N ++SG EA E W + I N SF V+ CTRCQ I
Sbjct: 719 VSDKEVQKETIIHRFRGNIILSG-CEAFEETQWKHMQIGKN----SFTVSGPCTRCQMIC 773
Query: 751 IDQETALNTDVPL 763
IDQ T T PL
Sbjct: 774 IDQTTGKKTIEPL 786
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328780894|ref|XP_394734.4| PREDICTED: molybdenum cofactor sulfurase 1-like isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 307/776 (39%), Positives = 443/776 (57%), Gaps = 81/776 (10%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
+K+ CYLD+ GA +YS +Q+ L +++++PH S+ I+ MR +IL +F
Sbjct: 30 IKEECYLDHAGATLYSDTQIKNVTSDLCNSLYANPHSIGTASNVTQDIIEHMRYQILDHF 89
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFNE--------GSFIYLTDNHTSVLGMRELV-- 168
+T +D YS+IFTSGAT+++K +++ F FN+ G F+Y DNHTSVLGMRE+V
Sbjct: 90 HTSADEYSIIFTSGATASLKIIADTFLFNKDERNVSNPGHFVYTQDNHTSVLGMREIVCK 149
Query: 169 KTNQIYSFSVDDARNMLN---EFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225
K +I + ++A + N + S N +NSLFVY A+ NFSG KYPL+W
Sbjct: 150 KGAKITCLNHNNAFEVFNFSSKSISSHPQQNNSFKTNSLFVYSAQCNFSGLKYPLTWIKD 209
Query: 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285
VH N + + + +VLLDAA + +N L+L +PDF+ +SFYKMFGYPTG+GAL
Sbjct: 210 VH-NGILSNVIPGTSTKWYVLLDAAAFASTNDLNLSIFKPDFVCLSFYKMFGYPTGIGAL 268
Query: 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-- 343
+V+ SA+ L K +YGGGTV +S+++E FHIK+ L ++FEDGT+ +L+IISLKYGFD
Sbjct: 269 LVRNVSANALQKIYYGGGTVNVSLSSELFHIKRQNLHQRFEDGTIPFLSIISLKYGFDIL 328
Query: 344 ---TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL 400
TMEK K + F L+++ Y L ++NG+P+ +LY DT Y QG IV FNL
Sbjct: 329 SFITMEKISK---HVFSLAKFLYTSLLMLHHNNGRPVAKLYSDTTYDNHDMQGGIVAFNL 385
Query: 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460
+ +G Y GY EV N+A L KI LRTGC CNPG+CQR L LS+ I +++ G++CG
Sbjct: 386 IRSNGEYVGYMEVLNMAALFKIHLRTGCFCNPGACQRHLALSNKEILQNYEAGYVCGGSI 445
Query: 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICL----------- 509
D+I+GKPTG+IR+S+G+ S DV+ L + + F+ + I D L
Sbjct: 446 DLINGKPTGAIRVSFGYMSTIKDVQTLLVMIKECFVDGSPINKIPDWWLDYKTFLYRKYN 505
Query: 510 --------------------INN----QRAESSKGF--------FLNHSDNINKENKLVS 537
INN ++ E+S + ++ I KE L
Sbjct: 506 PHNEKTKNITKYVIHNNAIEINNNLQDKKKETSTHIINDNPTFKLITNTSEIKKEYILEQ 565
Query: 538 IYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITR 597
+YIYP+K+C +K+ + W + + GL++DR+WMIIT SG LTQK NLCL++P +
Sbjct: 566 LYIYPIKSCAAYKITNSWNLNSKGLEYDREWMIITSSGTCLTQKQHINLCLLKPIIFKEK 625
Query: 598 NIMTLCYKSSGSTVEIGIDNE----GLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKG 653
IM L Y ++I +DN +C S+VC K+ G DCG+ V+NW+ L
Sbjct: 626 GIMQLHYPGM-PIMDIPLDNSINIINETICQSRVCGHKVQGTDCGSDVSNWISLALGLPN 684
Query: 654 LRLIRISKRSSKRNIN-----SFSNMGQYLLITLPSIQAQLENL-NAIFELENFVNRFRS 707
LRLI+ S +K N SFS+ Q+LLI S+ + + N + + ++RFR
Sbjct: 685 LRLIKQSNNDNKEKANIKSELSFSSQAQFLLINKASVLWLSDKIHNKEVQKDTLIHRFRG 744
Query: 708 NFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
N ++SG EA E W + I N SF + CTRCQ I IDQ T + T PL
Sbjct: 745 NIIISG-CEAFEETQWKHIYIGKN----SFVIIGPCTRCQMICIDQTTGVKTVEPL 795
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015092|ref|XP_003691545.1| PREDICTED: molybdenum cofactor sulfurase-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 314/808 (38%), Positives = 453/808 (56%), Gaps = 92/808 (11%)
Query: 29 ISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKEN 88
+S + PVY E K+ + +K+ CYLD+ GA +YS Q+ L +
Sbjct: 7 LSLLYTPVYDEEITKS-------FENNFSRIKEECYLDHAGATLYSDIQIKNVASDLYNS 59
Query: 89 IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE 148
++++PH + S+ I+ MR +IL +F+T +D YS+IFTSGAT+++K +++ F FN+
Sbjct: 60 LYANPHSIGIASNMTQDIIEHMRYQILDHFHTSADEYSIIFTSGATASLKIIADTFLFNK 119
Query: 149 --------GSFIYLTDNHTSVLGMRELV--KTNQIYSFSVDDARNMLNEFKES-----QE 193
G F+Y DNHTSVLGMRE+V K +I + ++A + N +S Q+
Sbjct: 120 DEKNMSNPGHFVYTQDNHTSVLGMREIVCKKGAKITCLNHNNAFEVFNSSSKSISSHSQQ 179
Query: 194 NVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253
N N SNSLFVY A+ NFSG KYPL+W VH N + + + +VLLDAA +
Sbjct: 180 N--NSLKSNSLFVYSAQCNFSGLKYPLTWIKDVH-NGILSNVIPSTSTKWYVLLDAAAFV 236
Query: 254 GSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANEN 313
+N L+L +PDFI +SFYKMFGYPTG+GAL+V+ SA+ L K +YGGGTV +S+++E
Sbjct: 237 STNDLNLSIVKPDFICLSFYKMFGYPTGIGALLVRNVSANALQKIYYGGGTVNVSLSSEL 296
Query: 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----TMEKKRKSFTNAFELSQYTYFYFKQ 368
FHIK+ L ++FEDGT+++L+IISLKYGFD TMEK K + F L+++ Y
Sbjct: 297 FHIKRQNLHQRFEDGTISFLSIISLKYGFDILSSITMEKISK---HVFSLAKFLYTSLLM 353
Query: 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428
L +SNG+P+ +LY DT Y QG IV FNL+ +G Y GY EV N+A L KI LRTGC
Sbjct: 354 LHHSNGRPVAKLYSDTVYDNHDMQGGIVAFNLIRSNGEYIGYMEVLNMAALFKIHLRTGC 413
Query: 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488
CNPG+CQR L LS+ I +++ G++CG D+I+ KPTG+IR+S+G+ S D++ L
Sbjct: 414 FCNPGACQRHLALSNKEILQNYEAGYVCGGSTDLINDKPTGAIRVSFGYMSTIKDIQKLL 473
Query: 489 SFLNQYFLQQADFVSIGDICL-------------------------------INNQRAES 517
+ + F+ + I D L INN+ +
Sbjct: 474 VMIKECFVDGSPINKIPDWWLDYKTFLYRKYNLHDGKTKDVTKHIIHNNATEINNKLQDR 533
Query: 518 SKGF------------FLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFD 565
K + ++ I KE L +YIYP+K+C +K+ W + + GL++D
Sbjct: 534 KKETLTHIINDNSTFKLITNTSAIKKEYTLEQLYIYPIKSCAAYKITDSWNLNSKGLEYD 593
Query: 566 RQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNE----GLD 621
R+WMIIT SG LTQK NLCL++P + IM L Y ++I +DN
Sbjct: 594 REWMIITSSGTCLTQKQHINLCLLKPIILRDKGIMQLHYPGM-PIMDIPLDNSINIINET 652
Query: 622 LCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNIN-----SFSNMGQ 676
+C S+VC K+ G DCG+ V+NW+ L LRLI+ S +K N SFS+ Q
Sbjct: 653 ICQSRVCGHKVQGTDCGSDVSNWISLALGLPNLRLIKQSSNDNKEKANIKPELSFSSQAQ 712
Query: 677 YLLITLPSIQAQLENL-NAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLL 735
+LLI S+ + + + + + ++RFR N ++SG EA E W + I N
Sbjct: 713 FLLINKASVLWLSDKVRDKEVQKDTIIHRFRGNIIISG-CEAFEETQWKHIYIGKN---- 767
Query: 736 SFQVTSQCTRCQYIYIDQETALNTDVPL 763
SF + CTRCQ I IDQ T + T PL
Sbjct: 768 SFMIIGPCTRCQMICIDQTTGVKTAEPL 795
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156554568|ref|XP_001605704.1| PREDICTED: molybdenum cofactor sulfurase 1 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 306/767 (39%), Positives = 446/767 (58%), Gaps = 79/767 (10%)
Query: 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS 122
CY+D+ GA +YS +Q+ ++++ L +++++PH N V + +D +R IL +F+T
Sbjct: 29 CYVDHAGATLYSDNQVKKSLDDLMLSLYTNPHSNGVNGNVTEEIVDNIRYTILDHFHTTQ 88
Query: 123 DHYSVIFTSGATSAIKTVSEYFEFNE---------GSFIYLTDNHTSVLGMRELV--KTN 171
D YSVIFTSGAT+A+K V+E F F G+F+YL DNHTSVLGMREL+ +
Sbjct: 89 DEYSVIFTSGATAALKIVAETFNFKNVDNKSDEQTGTFVYLQDNHTSVLGMRELIAHRGA 148
Query: 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
++ ++A +L E+ + ++N + NSLFVY A+ NFSG KYPLSW V +N
Sbjct: 149 KVTCLKNENAFEVLQEYDDKNIGMQNEK-PNSLFVYSAQCNFSGFKYPLSWIKNV-KNGC 206
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
+ K S +N F LLDAA + G+N L+L ++PDF+ +SFYK+FGYPTG+GALIVK S
Sbjct: 207 LNSYTK-SETNWFTLLDAACFAGTNDLNLSIYKPDFVCLSFYKLFGYPTGVGALIVKNDS 265
Query: 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME--KKR 349
A+VL K +YGGGTV + ++++ FH+K++ L ++FEDGTV++L I+SL++G+ +
Sbjct: 266 AYVLKKMYYGGGTVDVVLSSKMFHVKRESLHQRFEDGTVSFLTIVSLQHGYKILADIPMN 325
Query: 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409
+ + F L+++ + L + NG P+V+LY D+DY + QG IV+FN+L +G Y G
Sbjct: 326 RISAHVFSLAKFLHHSLLTLHHQNGAPVVKLYSDSDYEDRSLQGGIVSFNVLRANGEYVG 385
Query: 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469
Y EV N+A L KI LRTGC CNPG+CQRFL LSD + ++ G+ CG KD+IDGKPTG
Sbjct: 386 YMEVLNMAALYKIHLRTGCFCNPGACQRFLILSDEEVLKNYDTGYTCGGTKDLIDGKPTG 445
Query: 470 SIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSI------------------------- 504
++RIS+G+ S DV+ L L + F+ + +
Sbjct: 446 AVRISFGYMSTIRDVETVLLMLKKCFVNGKPVIKLPLWWSDFKTKLNEKYKINNSKSVNG 505
Query: 505 ------GDICLINNQRAESSKGFFLNHSDNIN-------KENKLVSIYIYPVKACGFFKV 551
+I I+N+ + F ++NIN + KL +++YPVK+CG ++V
Sbjct: 506 TQNNLKNNIVKISNRITLLEQVSFSVKNNNINIVQNGQKRPLKLAKMFVYPVKSCGAYEV 565
Query: 552 ESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTV 611
E +W +T+ GL+FDR+WMI+T +GV LTQK E LCL+ P D N + L Y S
Sbjct: 566 EREWILTSKGLQFDREWMIVTSAGVCLTQKQETKLCLIIPVIDFKNNELQLSYPGMPS-- 623
Query: 612 EIGID-----NE--GLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSS 664
IG+ NE +C KVC K+ G DCG V+ WL L R L+LIR S +
Sbjct: 624 -IGVPLYFSANEINSSKICRGKVCGHKVEGADCGAEVSEWLSLALGRPNLKLIRQSDSTK 682
Query: 665 KRNIN----SFSNMGQYLLITLPSIQAQLENL--NAIFELENFVNRFRSNFVVSG--QFE 716
+ N SF++ QYLLI + S + + ++ + + + RFR NF V G FE
Sbjct: 683 ENTTNKPALSFASQSQYLLINVASTDWLADRVPEDSQCDRDTMLYRFRGNFYVEGCAPFE 742
Query: 717 ANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
E W V + G F+V + CTRCQ I IDQ T T PL
Sbjct: 743 ---ETRWKTVQV----GNCYFKVEAVCTRCQMICIDQTTGKKTVEPL 782
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348576551|ref|XP_003474050.1| PREDICTED: molybdenum cofactor sulfurase-like [Cavia porcellus] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/806 (36%), Positives = 460/806 (57%), Gaps = 110/806 (13%)
Query: 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY 117
L + YLD+ GA ++ QSQ+ + L EN++ +PH S+ S ++Q+R ++L +
Sbjct: 45 RLAETIYLDHAGATLFPQSQLTNFTKDLMENVYGNPHSQSISSKLTHDTVEQVRYRVLAH 104
Query: 118 FNTDSDHYSVIFTSGATSAIKTVSEYF-------EFNEGSFIYLTDNHTSVLGMRELVKT 170
F+T + YS++FTSG+T+A+K V+E F E ++ F YLTDNHTSV+GMR++ +
Sbjct: 105 FHTTPEDYSMVFTSGSTAALKLVAEAFPWVSRGPENSKSQFCYLTDNHTSVVGMRKVAEA 164
Query: 171 NQIYSFSV--DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228
I S +V +D R + + + H LF YPA+SNFSGT+YPLSW V
Sbjct: 165 MDITSTAVSPEDMRAAEERGAVACDPDCQLPH---LFCYPAQSNFSGTRYPLSWIEQVKS 221
Query: 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288
+ FVLLDAA+Y ++ LDL HQ DF+ ISFYK+FG+PTGLGAL++
Sbjct: 222 GRLGPVDVP---GKWFVLLDAASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALLIN 278
Query: 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348
+ A +L K+++GGGT +A E+F++ + + E+FEDGT++YL +I+LK+GFD +E+
Sbjct: 279 NRVAPLLRKSYFGGGTAAAYLAGEDFYVSRPSVAERFEDGTISYLDVIALKHGFDALERL 338
Query: 349 RKSFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404
N F L++YTY L YSNG P+V++Y D+++ + QG I+NFN+L
Sbjct: 339 TGGMENIAQHTFTLARYTYATLSSLRYSNGAPVVQIYSDSEFSSPEVQGPIINFNVLDDS 398
Query: 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464
G GYSEV +A+L I LRTGC CN G+CQR LG+S+ +K +F+ GH+CGD+ D++D
Sbjct: 399 GNIIGYSEVDKMASLYNIHLRTGCFCNTGACQRHLGISNEMVKKYFEAGHVCGDNIDLVD 458
Query: 465 GKPTGSIRISYGHASNWDDVKYFLSFL---------NQYFLQQA--------------DF 501
G+PTGS+RIS+G+ S ++D + FL F+ +Q+ Q + D
Sbjct: 459 GQPTGSVRISFGYMSTFEDAQAFLRFIIATRLGSPGDQHVPQASTEEARTPSAEGKVQDM 518
Query: 502 VSIGDICLINNQRAESSKGFFLNHSDNINK------------------------------ 531
++ I+ Q+ S G + N S +N
Sbjct: 519 LTAAGRDCISLQKGMDS-GVWNNSSSTMNTMSLCPTLSKTTNTQQTPTEEAAGILPGDLG 577
Query: 532 ENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQP 591
+ + ++Y+YP+K+C F+V ++W V GL +DR WM++ H+G+ L+QK E LCL+QP
Sbjct: 578 PHSVTNLYLYPIKSCAAFEV-TRWPVGNQGLLYDRSWMVVNHNGICLSQKQEPRLCLIQP 636
Query: 592 NFDITRNIMTLCYKSSG-STVEIGI--DNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQ 648
++ + IM + K+ G +E+ + DNE + +C S+VC+D++ +DCG +++WL +
Sbjct: 637 FINLQQRIMVI--KAKGMEPIEVPLEEDNERIQICQSRVCTDRVNTYDCGEKISSWLSKF 694
Query: 649 LNRKGLRLIRIS---KRSSKRNIN-----------SFSNMGQYLLITLPSIQAQLENLNA 694
L R LI+ S +R++K+ S N QYLLI SI ++LN
Sbjct: 695 LGRP-CHLIKQSSNLQRNAKKKQGKDQPVGITATLSLVNEAQYLLINTSSILELHQHLNT 753
Query: 695 --------IFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRC 746
+F +++ ++RFR+N ++SG +A E WD+V I G L FQV C RC
Sbjct: 754 SDENGKEELFPMKDLISRFRANIIMSGT-KAFEEEKWDEVSI----GPLHFQVMGPCHRC 808
Query: 747 QYIYIDQETA-LNTDV--PLGEYQTR 769
Q I I+Q+T LN DV L E +TR
Sbjct: 809 QMICINQQTGQLNQDVFQKLSESRTR 834
|
Source: Cavia porcellus Species: Cavia porcellus Genus: Cavia Family: Caviidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|350419990|ref|XP_003492363.1| PREDICTED: molybdenum cofactor sulfurase-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 304/772 (39%), Positives = 442/772 (57%), Gaps = 75/772 (9%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ +K+ CYLD+ GA +YS Q+ L +++++PH S+ I++MR +IL
Sbjct: 28 SRIKEECYLDHAGATLYSDMQIKNVAFDLHNSLYANPHSIGTASNITQDIIERMRYQILY 87
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE--------GSFIYLTDNHTSVLGMRELV 168
+F+T D YS+IFTSGAT+++K +++ F FNE G FIY DNHTSVLGMRE+V
Sbjct: 88 HFHTSIDEYSIIFTSGATASLKLIADTFFFNEDKEDTSNSGHFIYTQDNHTSVLGMREVV 147
Query: 169 --KTNQIYSFSVDDARNMLNEFKE--SQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224
K +I S ++A + N K S E N SNSLF Y A+ NFSG KYPL+W
Sbjct: 148 NKKGVKISCLSHNNAFEIFNSSKSMSSYEQQNNSTKSNSLFAYSAQCNFSGLKYPLTWIK 207
Query: 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGA 284
VH N + + + +VLLDAA++ +N LDL ++PDF+ +SFYKMFGYPTG+GA
Sbjct: 208 HVH-NGILSSVVSDTSTKWYVLLDAASFASTNDLDLSIYKPDFVCLSFYKMFGYPTGIGA 266
Query: 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD- 343
L+VK SA L K +YGGGT+ +S+ +E FHIK+ L ++FEDGT+ +L+IISLK+GFD
Sbjct: 267 LLVKNDSASALQKVYYGGGTIDVSLTSELFHIKRRTLHQRFEDGTIPFLSIISLKHGFDI 326
Query: 344 ----TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399
TM+K K + F L+++ + L ++NG+P+ LY DT + QG IV FN
Sbjct: 327 LSSVTMDKISK---HVFSLARFLHRSLLILHHANGKPVARLYCDTAFDNHDIQGGIVTFN 383
Query: 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459
L+ +G Y GY E+ ++A L KI LRTGC CNPG+CQR+L LS+ + +++ G++CG
Sbjct: 384 LMRSNGEYIGYMEILHMAALFKIHLRTGCFCNPGACQRYLALSNKEVLQNYEAGYVCGGS 443
Query: 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ---------------------- 497
D+I+GKPTG++R S+G+ S DV+ L + + F+
Sbjct: 444 ADLINGKPTGAVRASFGYMSTIKDVQTLLLMIKKCFVDGPPINKIPEWWLDYKRALYKKY 503
Query: 498 -QAD--------FVSIGDICLINNQRAESSKGF--FLN---------HSDNINKENKLVS 537
Q D +V+ D+ I ++ K F+N + K+ L
Sbjct: 504 YQRDVNTKDVTNYVANDDMNGITDKLKNMKKSVTHFINDNPFFKLTMDTSATKKKCTLEQ 563
Query: 538 IYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITR 597
+YIYP+K+CG +K+ W + + GL++DR+WMIIT SG+ LTQK NLCL+ P R
Sbjct: 564 LYIYPIKSCGAYKIIGSWNLNSKGLEYDREWMIITSSGICLTQKQHVNLCLLNPIIYKDR 623
Query: 598 NIMTLCYKSSGSTVEIGIDNEGLD-----LCTSKVCSDKITGFDCGNAVANWLDEQLNRK 652
IM L Y T+ I +++ + +C S+VC K+ G DCG+ V+ WL L
Sbjct: 624 GIMQLHYPEM-PTINISLNSSPKNTINGTVCQSRVCGHKVEGVDCGSEVSEWLSSALGLP 682
Query: 653 GLRLIRISKRSSKRNINSFSNMGQYLLITLPSIQAQLENLNAI-FELENFVNRFRSNFVV 711
LRLIR + + SF++ QYL+I S+ + ++ F+ + ++RFR N ++
Sbjct: 683 NLRLIRQNDNEDSKTKLSFASQAQYLVINKASVSWLSDKISDTGFQKDTIIHRFRGNMIL 742
Query: 712 SGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
SG EA E W+ V I N SF VT CTRCQ I IDQ T+ T PL
Sbjct: 743 SG-CEAFEETKWEHVYIGKN----SFVVTGPCTRCQMICIDQTTSKKTVEPL 789
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91077036|ref|XP_967646.1| PREDICTED: similar to molybdenum cofactor sulfurase [Tribolium castaneum] gi|270001749|gb|EEZ98196.1| hypothetical protein TcasGA2_TC000626 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 292/722 (40%), Positives = 422/722 (58%), Gaps = 47/722 (6%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
YL++ GA +YS+ Q+ + QL N++++PH ++ S ID +R ++L +F T D
Sbjct: 31 YLEHAGATLYSEKQLEEIAHQLCTNLYANPHAKNLSSKLTEDAIDIVRYQLLAHFKTTPD 90
Query: 124 HYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDDAR 182
YSV+FTSGAT+++K V+E F++ +GS +YL DNHTSVLGMR + F+
Sbjct: 91 EYSVVFTSGATASLKLVAENFKYGPDGSLVYLQDNHTSVLGMRAYAPHTKCIKFT----- 145
Query: 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN 242
E+ + + NSLFV+PA+SNFSG KYPLSW V + + +
Sbjct: 146 -------ETLSQCKTAKSGNSLFVFPAQSNFSGVKYPLSWIKAVKKGALGPGEW------ 192
Query: 243 CFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG 302
+V+LDAA + + ++DL + +PDF++ISF K+FGYPTGLGAL+V+ +S VL K +YGG
Sbjct: 193 -YVVLDAAAFAPTEVMDLSEIKPDFVAISFCKIFGYPTGLGALLVRNESCGVLRKRYYGG 251
Query: 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF----TNAFEL 358
GTV ++ A + + +D + E+FEDGTV +L+I++LK GF+T+++ SF + F L
Sbjct: 252 GTVFMAQAVRDEVVMRDVIHERFEDGTVPFLSILALKAGFNTLKRLDLSFETISRHTFSL 311
Query: 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418
+QY Y L +SNG+P V LYH+T + + QG IVNFN+L +G Y GY+EV + AN
Sbjct: 312 AQYVYRNLLCLHHSNGKPAVVLYHNTTFENPQDQGPIVNFNILRDNGEYVGYAEVSHFAN 371
Query: 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478
L I LRTGC CNPG+CQ FL LS +K H++ GH+CGD D++DG PTGS+R+S+G+
Sbjct: 372 LYNIHLRTGCFCNPGACQYFLNLSPEDVKKHYEAGHVCGDQHDLVDGYPTGSVRVSFGYM 431
Query: 479 SNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNHSDNINKENKLVSI 538
S D L + F+ + I + S DN N E L I
Sbjct: 432 SRKIDADKLLEMVENCFVTKPVIKKIPHKGRNDYLIPTDSDYKLEEELDNNNSEGVLKQI 491
Query: 539 YIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRN 598
+YP+K+CG F V +W +T++GLKFDRQWMII SGV +TQK K +CL++P D+
Sbjct: 492 ILYPIKSCGGFSV-PQWPLTSTGLKFDRQWMIINSSGVAITQKNNKKMCLIRPIIDLETE 550
Query: 599 IMTLCYKSSGS-TVEIGIDNEG---LDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGL 654
++ L Y S V I + + LC SKVC DKI G+DCG+ V++WL E L G+
Sbjct: 551 MLFLTYPGRKSFHVPINVSSYSQNVASLCQSKVCGDKIEGWDCGDEVSDWLSEVLECPGV 610
Query: 655 RLI-------RISKRSSKRNIN---SFSNMGQYLLITLPSIQ---AQLENLNAIFELENF 701
RL+ +I R S +N S N Q+LLI S++ Q+ EL
Sbjct: 611 RLLKQCDENEKIFTRKSTKNDEIQLSLVNKAQFLLINEASVEWLRGQIREEEFFEELGTT 670
Query: 702 VNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDV 761
+ RFR+NFVV E EN++ + + + ++F+ CTRCQ I IDQ T +
Sbjct: 671 IQRFRANFVVRFNKEF-TENEFGEFIFDD----IAFEAGGVCTRCQMICIDQTTGTTSKE 725
Query: 762 PL 763
PL
Sbjct: 726 PL 727
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014503|ref|XP_002427929.1| molybdopterin cofactor sulfurase, putative [Pediculus humanus corporis] gi|212512413|gb|EEB15191.1| molybdopterin cofactor sulfurase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 304/762 (39%), Positives = 441/762 (57%), Gaps = 87/762 (11%)
Query: 60 KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN 119
KD+CYLD+ GA +YS+ Q+ + L N++ +PH + S + IDQ+R +IL++F+
Sbjct: 22 KDVCYLDHAGATLYSEKQIKNHLNDLLSNVYGNPHSLNHSSKQSLDLIDQVRQRILKFFH 81
Query: 120 TDSDHYSVIFTSGATSAIKTVSEYFEFN---------------------------EGSFI 152
D YS+IFTS ATSAIK + E F +N + +F+
Sbjct: 82 ATPDEYSLIFTSSATSAIKLLFENFNWNSNFEDEEFYHDTESDFFQNSSQSTPTAQSAFV 141
Query: 153 YLTDNHTSVLGMRELVKTNQI--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210
Y NHTSV+G REL + I Y ++A ++++ N E NS+F YPA+
Sbjct: 142 YTQSNHTSVVGGRELAQEKNIPFYCLGYEEANTLMSDHNHVPTN-ETYPTCNSIFAYPAQ 200
Query: 211 SNFSGTKYPLSWCNTVHR-------NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263
N+SG KYPL W VH N K+H S F LLDAA+YC ++ LDL Q
Sbjct: 201 CNYSGKKYPLEWIKKVHTGILDSYGNSNRKRH-----SKWFCLLDAASYCSTSDLDLSQV 255
Query: 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323
PDF+ ISFYK+FGYPTGLGAL+V+ +S++VL K ++GGGTV+I++ +N+H K+ L E
Sbjct: 256 HPDFVCISFYKIFGYPTGLGALLVRNQSSYVLKKKYFGGGTVEIALPFQNYHKKRKTLHE 315
Query: 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSF----TNAFELSQYTYFYFKQLSYSNGQPLVE 379
+FEDGT+ +L IISL++G +T+ + + + FEL++ T K L + NG P VE
Sbjct: 316 RFEDGTIPFLTIISLEHGLNTLNRLNLNMKLISNHVFELARLTVKKLKSLIHWNGTPAVE 375
Query: 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFL 439
+Y DT+Y + + QG IVNFNL + Y G+ EV ++ANL+KI +RTGC CN G+CQ+ L
Sbjct: 376 IYADTNYDDVRTQGGIVNFNLKRANHQYIGFVEVLHMANLRKIYIRTGCFCNLGACQKHL 435
Query: 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499
LSD +K ++Q GH+CGD KD+IDGKPTGSIR+S+G+ S +DV ++ + + F++
Sbjct: 436 NLSDADLKLYYQAGHVCGDAKDLIDGKPTGSIRVSFGYMSTENDVNKLVNMIKETFVELT 495
Query: 500 DFVSIGDICLINNQRAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTA 559
+ + +R +S G L I ++P+K+CG +V S W++ +
Sbjct: 496 PQI-------MPYKRKITSNG----------SGKYLSKILLFPIKSCGAMEVTS-WKLNS 537
Query: 560 SGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCY-KSSGSTVEIGID-- 616
GL++DR+WM+ T SGV LTQK E LC++ PN ++ +TL + K T I D
Sbjct: 538 KGLEYDREWMVTTTSGVCLTQKQEPKLCMICPNINLKNQTLTLTFDKKDAITFPIDFDDN 597
Query: 617 -NEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISK---RSSKRNIN--- 669
N LC SKVC++ I +DCG V+ WL LN +GLRL++ SK RSSK++ N
Sbjct: 598 NNNQYGLCESKVCNNFIQAYDCGENVSQWLSAHLNIEGLRLVKQSKNDNRSSKKSKNVKN 657
Query: 670 ------SFSNMGQYLLITLPSIQAQLENLNAIFELE--NFVNRFRSNFVVSGQFEANAEN 721
S +N Q+L+I S++ E +N +L+ N NRFR NF + G E +EN
Sbjct: 658 ENSVKLSLTNQAQFLMINNESVRWLHEIINQDGDLDFNNVSNRFRGNFYIEGGVEF-SEN 716
Query: 722 DWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPL 763
+W V I G + F+V C RCQ I IDQ+T PL
Sbjct: 717 NWKTVSI----GSVKFKVEGPCGRCQMICIDQKTGEKNRKPL 754
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 815 | ||||||
| UNIPROTKB|Q16P90 | 764 | mal3 "Molybdenum cofactor sulf | 0.867 | 0.925 | 0.374 | 6.9e-134 | |
| MGI|MGI:1915841 | 862 | Mocos "molybdenum cofactor sul | 0.527 | 0.498 | 0.424 | 1.5e-132 | |
| UNIPROTKB|Q16GH0 | 764 | mal1 "Molybdenum cofactor sulf | 0.874 | 0.933 | 0.368 | 1.2e-131 | |
| UNIPROTKB|F1PDQ7 | 879 | MOCOS "Uncharacterized protein | 0.531 | 0.492 | 0.417 | 7.2e-124 | |
| UNIPROTKB|G3N1I0 | 882 | MOCOS "Molybdenum cofactor sul | 0.538 | 0.497 | 0.408 | 4e-121 | |
| UNIPROTKB|Q9N0E7 | 882 | MOCOS "Molybdenum cofactor sul | 0.538 | 0.497 | 0.408 | 4e-121 | |
| UNIPROTKB|F1N3A9 | 849 | MOCOS "Molybdenum cofactor sul | 0.520 | 0.499 | 0.418 | 5.1e-121 | |
| UNIPROTKB|Q96EN8 | 888 | MOCOS "Molybdenum cofactor sul | 0.525 | 0.481 | 0.429 | 8.4e-121 | |
| UNIPROTKB|F1SAI5 | 889 | LOC100621611 "Uncharacterized | 0.521 | 0.478 | 0.412 | 2.2e-118 | |
| UNIPROTKB|B0WSX1 | 760 | mal2 "Molybdenum cofactor sulf | 0.765 | 0.821 | 0.371 | 6.2e-117 |
| UNIPROTKB|Q16P90 mal3 "Molybdenum cofactor sulfurase 3" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
Identities = 289/772 (37%), Positives = 438/772 (56%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ+R ++L+
Sbjct: 24 SRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQVRYRVLR 79
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELVKTNQIYS 175
+FNT S YS+IFTSG T+++K ++E +EF EG+F+YL D+HTSVLGMRE+V T +IY
Sbjct: 80 HFNTRSSEYSLIFTSGTTASLKLLAESYEFAPEGAFVYLKDSHTSVLGMREIVGTERIYP 139
Query: 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF--- 232
+ +L E S+ + + HS SL V+PA+ NF+G KYPL + RN +
Sbjct: 140 V---EREQLLKELDSSERS--DSEHS-SLIVFPAQCNFNGVKYPLELVRKIQRNGISGYG 193
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL+V +A
Sbjct: 194 KERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGALLVHHTAA 246
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
L K +YGGGTVKI+MA NFH+K+D L E+FEDGT+ + +II+L GF+T+E+ S
Sbjct: 247 DQLRKKYYGGGTVKIAMAGRNFHVKRDPLVERFEDGTLAFTSIIALLQGFETLERLVPST 306
Query: 353 TN----------AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
F L +Y Y K L +SNG +V+LYHDT + + QG IVNFN+LH
Sbjct: 307 AGLRTIERISQQTFHLGRYCYNRLKALRHSNGNAVVKLYHDTGFEDQGLQGGIVNFNILH 366
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXX 462
+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+C
Sbjct: 367 EDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHVCGDANDL 426
Query: 463 XXXXPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFF 522
PTGS+R+S+G+ + +D+ L + + ++++ ++ G Q K +
Sbjct: 427 IDGQPTGSVRVSFGYMTRKEDIDCLLEMVEKCYIRKT--IANG---FTRTQIVSKYKSY- 480
Query: 523 LNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKL 582
D + +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +GV LTQK
Sbjct: 481 ----D----QPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENGVALTQKK 532
Query: 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTV-EIGI--DNEGLDLCTSKVCSDKITGFDCGN 639
+CL++P ++ N MTL + S V ++ + +++ + LC +KVC D + DCG+
Sbjct: 533 LTEMCLIRPQINLKTNEMTLSHPSMDDFVLDLDLLGESQRIKLCQTKVCQDNVQAIDCGD 592
Query: 640 AVANWLDEQLNRKGXXXXXXX-----XXXXXXXXXXFSNMGQYLLITLPSIQ---AQLEN 691
VA W+ L G +N Q+LLI S++ ++ +
Sbjct: 593 QVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEIALANQAQFLLINQASVRWLADKVPD 652
Query: 692 LNAIFE---LENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQY 748
+ + E LE+ V+RFR N +V E DW +V I G L F V C+RCQ
Sbjct: 653 WDELHEEPTLESLVDRFRGNLIVETPTSME-ECDWKRVTI----GYLEFAVDGPCSRCQM 707
Query: 749 IYIDQETALNTDVPLGEYQTRNFSTVSLNVK-EFFNNLEKTYNQYNFCSSMI 799
I IDQ T + T PL + + N L Q+ +C+S++
Sbjct: 708 ICIDQGTGVKTTEPLRTIGREFKGKMRFGIYLSHVNPLRDGSEQWLYCNSVV 759
|
|
| MGI|MGI:1915841 Mocos "molybdenum cofactor sulfurase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 1.5e-132, Sum P(3) = 1.5e-132
Identities = 189/445 (42%), Positives = 273/445 (61%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
YLD+ GA ++ QSQ+ + L EN++ +PH ++ S ++Q+R +IL +F+T +
Sbjct: 51 YLDHAGATLFPQSQLTNFTKDLMENVYGNPHSQNITSKLTHDTVEQVRYRILTHFHTTPE 110
Query: 124 HYSVIFTSGATSAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVKTNQIYSF 176
Y VIFT+G+T+A++ V+E F + N GS F YLTDNHTSV+GMR++ + S
Sbjct: 111 DYIVIFTAGSTAALRLVAEAFPWVSRSPENSGSHFCYLTDNHTSVVGMRKVAAAMSVTSI 170
Query: 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHF 236
V E K++ + + + LF YPA+SNFSGT+YPLSW V ++
Sbjct: 171 PVKPEDMWSAEGKDAGACDPDCQLPH-LFCYPAQSNFSGTRYPLSWVEEVKSG---RRSP 226
Query: 237 KCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296
+ FVLLDAA+Y ++ LDL HQ DFI ISFYK+FG PTGLGAL+V + A +L
Sbjct: 227 VNAPGKWFVLLDAASYVSTSPLDLSAHQADFIPISFYKIFGLPTGLGALLVNKHVAPLLR 286
Query: 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTN-- 354
K ++GGGT +A E+F++ + + E+FEDGT+++L +I+LK+GFD +E N
Sbjct: 287 KGYFGGGTAAAYLAGEDFYVPRSSVAERFEDGTISFLDVIALKHGFDALEHLTGGMVNIQ 346
Query: 355 --AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412
F L QYT+ L Y NG P+V +Y D+++ QG I+NFN+L G GYS+
Sbjct: 347 QHTFALVQYTHSALSSLRYLNGAPVVRIYSDSEFSSPDVQGPIINFNVLDDGGKIIGYSQ 406
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXXXXXXPTGSIR 472
V +A+L I LRTGC CN G+CQR LGLSD +K HFQ GH+C PTGS+R
Sbjct: 407 VDKMASLYNIHLRTGCFCNLGACQRHLGLSDEMVKKHFQAGHVCGDDVDIIDGRPTGSVR 466
Query: 473 ISYGHASNWDDVKYFLSFLNQYFLQ 497
IS+G+ S +D + FL F++ +L+
Sbjct: 467 ISFGYMSTLEDAQAFLRFISTIYLR 491
|
|
| UNIPROTKB|Q16GH0 mal1 "Molybdenum cofactor sulfurase 1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 1.2e-131, P = 1.2e-131
Identities = 287/779 (36%), Positives = 441/779 (56%)
Query: 51 IMVEGK-NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQ 109
+ +E + + LK+ CYLD+ G +Y+ SQ+ E L +N++ +PH + D +DQ
Sbjct: 17 LAIENEFSRLKEKCYLDHAGTTLYADSQIRSVCEGLAQNLYCNPHTSRTTEDL----LDQ 72
Query: 110 MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRELV 168
+R ++L++FNT S YS+IFTSG T+++K ++E FEF EG+F+YL D+HTSVLGMRE+V
Sbjct: 73 VRYRVLRHFNTRSSEYSLIFTSGTTASLKLLAESFEFAPEGAFVYLKDSHTSVLGMREIV 132
Query: 169 KTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228
T +IY + +L E +S E +N HS SL V+PA+ NF+G KYPL + R
Sbjct: 133 GTERIYPV---EREQLLKEL-DSSERSDN-EHS-SLIVFPAQCNFNGVKYPLELVRKIQR 186
Query: 229 NHVF---KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285
+ + K+ F+ V LDAA++ ++ LDL ++QPDF+ +SFYK+FGYPTGLGAL
Sbjct: 187 DGISGYGKERFR-------VCLDAASFVSTSFLDLSKYQPDFVCLSFYKIFGYPTGLGAL 239
Query: 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
+V +A L K +YGGGTVKI+MA FH+K+D L E+FEDGT+ + +II+L GF+T+
Sbjct: 240 LVHHTAADQLRKKYYGGGTVKIAMAGRIFHVKRDPLVERFEDGTLAFTSIIALLQGFETL 299
Query: 346 EKKRKSFTN----------AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395
E+ S F + +Y Y K L +SN +V+LYHDT + + QG I
Sbjct: 300 ERLVPSTAGLRTIERISQQTFHIGRYCYNRLKALRHSNENAVVKLYHDTGFEDRGLQGGI 359
Query: 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455
VNFN+LH+DGTY G++EV +A+L I LRTGC CNPG+CQR L LSD + F GH+
Sbjct: 360 VNFNILHEDGTYVGFAEVSYMASLHNILLRTGCFCNPGACQRHLQLSDEDVLKQFDAGHV 419
Query: 456 CXXXXXXXXXXPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRA 515
C PTGS+R+S+G+ + +D+ L + + ++++ ++ G Q
Sbjct: 420 CGDANDLIDGQPTGSVRVSFGYMTRKEDIDCLLEMIEKCYIRKT--IANG---FTRTQIV 474
Query: 516 ESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSG 575
K +H + +L I ++P+K+CG FKV ++W ++ GLK DR+++I+ +G
Sbjct: 475 SKYK----SHD-----QPRLKMICLFPIKSCGAFKVTTRWPLSRRGLKHDREFVIVDENG 525
Query: 576 VPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTV-EIGI--DNEGLDLCTSKVCSDKI 632
V LTQK +CL++P ++ N MTL + V ++ + +++ + LC +KVC D +
Sbjct: 526 VALTQKKLAEMCLIRPQINVKTNEMTLSHPGMADFVLQLDLLGESQRIKLCQTKVCQDNV 585
Query: 633 TGFDCGNAVANWLDEQLNRKGXXXXXXX-----XXXXXXXXXXFSNMGQYLLITLPSIQ- 686
DCG+ VA W+ L G +N Q+LLI S++
Sbjct: 586 QAIDCGDQVAEWISVALQTSGLRLLKQSDEEVRTFQQSKQEIALANQAQFLLINQASVRW 645
Query: 687 --AQLENLNAIFE---LENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTS 741
++ + + + E LE+ V+RFR N +V ++ E DW +V I G L F V
Sbjct: 646 LADKVPDWDELHEEPTLESLVDRFRGNLIVETP-KSMEECDWKRVTI----GYLEFAVDG 700
Query: 742 QCTRCQYIYIDQETALNTDVPLGEYQTRNFSTVSLNVK-EFFNNLEKTYNQYNFCSSMI 799
C+RCQ I IDQ T + PL + + N L Q+ +C+S++
Sbjct: 701 PCSRCQMICIDQGTGVKATEPLRTIGREFKGKMRFGIYLSHVNPLRDGSEQWLYCNSVV 759
|
|
| UNIPROTKB|F1PDQ7 MOCOS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 7.2e-124, Sum P(2) = 7.2e-124
Identities = 187/448 (41%), Positives = 274/448 (61%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
YLD+ GA ++ QSQ+ L EN++ +PH ++ S ++ +R +IL +F+T S+
Sbjct: 51 YLDHAGATLFPQSQLTSFTNDLMENVYGNPHSQNISSKLTHETVEHVRYRILAHFHTSSE 110
Query: 124 HYSVIFTSGATSAIKTVSEYF-------EFNEGSFIYLTDNHTSVLGMRELVKTNQIYSF 176
YSVIFT+G+T+A+K V+E F E + F YLTD+HTSV+GMR++ + S
Sbjct: 111 DYSVIFTAGSTAALKLVAEAFPWVSPGPECSGSRFCYLTDSHTSVVGMRKVTTAMNVTSI 170
Query: 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHF 236
V L E + + + + + + LF YPA+SNFSGT+YPLSW V +
Sbjct: 171 PVRPEDMRLAERRAAAASDPDCQLPH-LFCYPAQSNFSGTRYPLSWIGEVKAGRMCPVSV 229
Query: 237 KCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296
FVLLDAA+Y ++ LDL HQ DF+ +SFYK+FG+PTGLGAL+V + A +L
Sbjct: 230 P---GKWFVLLDAASYVSTSPLDLSVHQADFVPLSFYKLFGFPTGLGALLVNNRVAPLLR 286
Query: 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTN-- 354
KT++GGGT +A E+F+I + + E+FEDGT+++L +I+LK+GFD +E+ N
Sbjct: 287 KTYFGGGTAAAYLAGEDFYIPRSSVAERFEDGTISFLDVIALKHGFDALERLTGGMENIK 346
Query: 355 --AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412
F L+QYTY L Y +G P+V +Y D+++ + QG I+NFN+L G GYS+
Sbjct: 347 QHTFTLAQYTYTALSALRYPDGAPVVRIYSDSEFSSPEEQGPIINFNVLDHSGNIIGYSQ 406
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXXXXXXPTGSIR 472
V +A+L I +RTGC CN G+CQR LG+SD +K H Q GH+C PTGS+R
Sbjct: 407 VDKMASLYNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSVR 466
Query: 473 ISYGHASNWDDVKYFLSFLNQYFLQQAD 500
IS+G+ S +D + FL F+ L Q+D
Sbjct: 467 ISFGYMSTVEDAQAFLRFIIAMQLHQSD 494
|
|
| UNIPROTKB|G3N1I0 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 186/455 (40%), Positives = 277/455 (60%)
Query: 49 HIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEID 108
H + L YLD+ G ++ QSQ+ ++ L EN++ +PH ++ S ++
Sbjct: 36 HELRAREFGRLAGTVYLDHAGTTLFPQSQITSFMKDLMENVYGNPHSQNISSKLTHDTVE 95
Query: 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF----NEGS---FIYLTDNHTSV 161
Q+R +IL +F+T + Y+VIFTSG+T+A+K V+E F + EGS F YLTD+HTSV
Sbjct: 96 QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 155
Query: 162 LGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221
+GMR++ + S V E +++ + LF YPA+SNFSGT+YPLS
Sbjct: 156 VGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHLFCYPAQSNFSGTRYPLS 215
Query: 222 WCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPT 280
W V + SR FVLLDAA + G++ LDL HQ DF+ ISFYK+FG+PT
Sbjct: 216 WIGEVKSG----RRRPASRPGKWFVLLDAAAFVGTSPLDLSVHQADFVPISFYKIFGFPT 271
Query: 281 GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340
GLGAL+V + A +L KT++GGGT +A ++F++ ++ + E+FEDGT+++L +I+LK+
Sbjct: 272 GLGALLVNNRLAALLRKTYFGGGTAAAYLAGDDFYVPRESVAERFEDGTISFLDVIALKH 331
Query: 341 GFDTMEKKRKSFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396
GFD +E+ + F L+QYTY L Y NG P+V++Y D+D+ + QG ++
Sbjct: 332 GFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYPNGAPVVQIYSDSDFSSPEVQGPVI 391
Query: 397 NFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456
+FN+L G GYS+V +A+L I +RTGC CN G+CQR LG+SD +K H Q GH+C
Sbjct: 392 SFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVC 451
Query: 457 XXXXXXXXXXPTGSIRISYGHASNWDDVKYFLSFL 491
PTGS+RIS+G+ S +D + FL F+
Sbjct: 452 GDDVDLIDGQPTGSVRISFGYMSTLEDAQAFLRFI 486
|
|
| UNIPROTKB|Q9N0E7 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 940 (336.0 bits), Expect = 4.0e-121, Sum P(2) = 4.0e-121
Identities = 186/455 (40%), Positives = 277/455 (60%)
Query: 49 HIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEID 108
H + L YLD+ G ++ QSQ+ ++ L EN++ +PH ++ S ++
Sbjct: 36 HELRAREFGRLAGTVYLDHAGTTLFPQSQITSFMKDLMENVYGNPHSQNISSKLTHDTVE 95
Query: 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF----NEGS---FIYLTDNHTSV 161
Q+R +IL +F+T + Y+VIFTSG+T+A+K V+E F + EGS F YLTD+HTSV
Sbjct: 96 QVRFRILAHFHTSPEDYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSV 155
Query: 162 LGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221
+GMR++ + S V E +++ + LF YPA+SNFSGT+YPLS
Sbjct: 156 VGMRKITAAMNVSSIPVRPEDMWSAERQDAAAAGDPAGQPPHLFCYPAQSNFSGTRYPLS 215
Query: 222 WCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPT 280
W V + SR FVLLDAA + G++ LDL HQ DF+ ISFYK+FG+PT
Sbjct: 216 WIGEVKSG----RRRPASRPGKWFVLLDAAAFVGTSPLDLSVHQADFVPISFYKIFGFPT 271
Query: 281 GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340
GLGAL+V + A +L KT++GGGT +A ++F++ ++ + E+FEDGT+++L +I+LK+
Sbjct: 272 GLGALLVNNRLAALLRKTYFGGGTAAAYLAGDDFYVPRESVAERFEDGTISFLDVIALKH 331
Query: 341 GFDTMEKKRKSFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396
GFD +E+ + F L+QYTY L Y NG P+V++Y D+D+ + QG ++
Sbjct: 332 GFDALERLTGGMESIRQHTFTLAQYTYTALSSLRYPNGAPVVQIYSDSDFSSPEVQGPVI 391
Query: 397 NFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456
+FN+L G GYS+V +A+L I +RTGC CN G+CQR LG+SD +K H Q GH+C
Sbjct: 392 SFNVLDDHGNVVGYSQVDKMASLHNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVC 451
Query: 457 XXXXXXXXXXPTGSIRISYGHASNWDDVKYFLSFL 491
PTGS+RIS+G+ S +D + FL F+
Sbjct: 452 GDDVDLIDGQPTGSVRISFGYMSTLEDAQAFLRFI 486
|
|
| UNIPROTKB|F1N3A9 MOCOS "Molybdenum cofactor sulfurase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 939 (335.6 bits), Expect = 5.1e-121, Sum P(2) = 5.1e-121
Identities = 184/440 (41%), Positives = 274/440 (62%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
YLD+ G ++ QSQ+ ++ L EN++ +PH ++ S ++Q+R +IL +F+T +
Sbjct: 18 YLDHAGTTLFPQSQITSFMKDLMENVYGNPHSQNISSKLTHDTVEQVRFRILAHFHTSPE 77
Query: 124 HYSVIFTSGATSAIKTVSEYFEF----NEGS---FIYLTDNHTSVLGMRELVKTNQIYSF 176
Y+VIFTSG+T+A+K V+E F + EGS F YLTD+HTSV+GMR++ + S
Sbjct: 78 DYTVIFTSGSTAALKLVAEAFPWVSPGPEGSGSCFCYLTDSHTSVVGMRKITAAMNVSSI 137
Query: 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHF 236
V E +++ + LF YPA+SNFSGT+YPLSW V +
Sbjct: 138 PVRPEDMWSAERQDAAAAGDPAGQPPHLFCYPAQSNFSGTRYPLSWIGEVKSG----RRR 193
Query: 237 KCSR-SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295
SR FVLLDAA + G++ LDL HQ DF+ ISFYK+FG+PTGLGAL+V + A +L
Sbjct: 194 PASRPGKWFVLLDAAAFVGTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRLAALL 253
Query: 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTN- 354
KT++GGGT +A ++F++ ++ + E+FEDGT+++L +I+LK+GFD +E+ +
Sbjct: 254 RKTYFGGGTAAAYLAGDDFYVPRESVAERFEDGTISFLDVIALKHGFDALERLTGGMESI 313
Query: 355 ---AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411
F L+QYTY L Y NG P+V++Y D+D+ + QG +++FN+L G GYS
Sbjct: 314 RQHTFTLAQYTYTALSSLRYPNGAPVVQIYSDSDFSSPEVQGPVISFNVLDDHGNVVGYS 373
Query: 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXXXXXXPTGSI 471
+V +A+L I +RTGC CN G+CQR LG+SD +K H Q GH+C PTGS+
Sbjct: 374 QVDKMASLHNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVCGDDVDLIDGQPTGSV 433
Query: 472 RISYGHASNWDDVKYFLSFL 491
RIS+G+ S +D + FL F+
Sbjct: 434 RISFGYMSTLEDAQAFLRFI 453
|
|
| UNIPROTKB|Q96EN8 MOCOS "Molybdenum cofactor sulfurase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 958 (342.3 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
Identities = 193/449 (42%), Positives = 280/449 (62%)
Query: 57 NHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116
+ L YLD+ GA ++SQSQ+ L EN + +PH ++ S ++Q+R +IL
Sbjct: 44 SRLAGTVYLDHAGATLFSQSQLESFTSDLMENTYGNPHSQNISSKLTHDTVEQVRYRILA 103
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVK 169
+F+T ++ Y+VIFT+G+T+A+K V+E F + + GS F YLTD+HTSV+GMR +
Sbjct: 104 HFHTTAEDYTVIFTAGSTAALKLVAEAFPWVSQGPESSGSRFCYLTDSHTSVVGMRNVTM 163
Query: 170 TNQIYSFSV--DDARNMLNEFKESQENVE-NMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ S V +D + E S N + + H LF YPA+SNFSG +YPLSW V
Sbjct: 164 AINVISTPVRPEDLWSA-EERSASASNPDCQLPH---LFCYPAQSNFSGVRYPLSWIEEV 219
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ H + FVLLDAA+Y ++ LDL HQ DF+ ISFYK+FG+PTGLGAL+
Sbjct: 220 KSGRL---HPVSTPGKWFVLLDAASYVSTSPLDLSAHQADFVPISFYKIFGFPTGLGALL 276
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346
V ++A +L KT++GGGT +A E+F+I + + ++FEDGT+++L +I+LK+GFDT+E
Sbjct: 277 VHNRAAPLLRKTYFGGGTASAYLAGEDFYIPRQSVAQRFEDGTISFLDVIALKHGFDTLE 336
Query: 347 KKRKSFTN----AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402
+ N F L+QYTY L Y NG P+V +Y D+++ + QG I+NFN+L
Sbjct: 337 RLTGGMENIKQHTFTLAQYTYVALSSLQYPNGAPVVRIYSDSEFSSPEVQGPIINFNVLD 396
Query: 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXX 462
G GYS+V +A+L I LRTGC CN G+CQR LG+S+ ++ HFQ GH+C
Sbjct: 397 DKGNIIGYSQVDKMASLYNIHLRTGCFCNTGACQRHLGISNEMVRKHFQAGHVCGDNMDL 456
Query: 463 XXXXPTGSIRISYGHASNWDDVKYFLSFL 491
PTGS+RIS+G+ S DDV+ FL F+
Sbjct: 457 IDGQPTGSVRISFGYMSTLDDVQAFLRFI 485
|
|
| UNIPROTKB|F1SAI5 LOC100621611 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
Identities = 181/439 (41%), Positives = 272/439 (61%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
YLD+ GA ++ QSQ+ + L EN++ +PH ++ S ++Q+R +IL +F T +
Sbjct: 51 YLDHAGATLFPQSQLTSFTKDLMENLYGNPHSQNISSKLTYETVEQVRYRILAHFCTSPE 110
Query: 124 HYSVIFTSGATSAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVKTNQIYSF 176
Y+VIFT+G+T+A+K V+E F + + GS F YLTD+HTSV+GMR++ +
Sbjct: 111 DYTVIFTAGSTAALKLVAEAFPWVSPGPESSGSRFCYLTDSHTSVVGMRKVTTAMNVTCI 170
Query: 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHF 236
V L E +++ + LF YPA+SNFSG++YPLSW V +
Sbjct: 171 PVRPEDMWLAEKQDAAAAGDPDHQPPHLFCYPAQSNFSGSRYPLSWIGEVKSGQMRPVS- 229
Query: 237 KCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296
+ +VLLDAA Y G++ LDL HQ DF+ ISFYK+FG+PTGLGAL+V ++A +L
Sbjct: 230 --APGKWYVLLDAAAYVGTSPLDLSVHQADFVPISFYKIFGFPTGLGALLVNNRTAPLLR 287
Query: 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFT--- 353
KT++GGGT +A E+F+I ++ + E+FEDGT+++L +I+LK+GFD +E
Sbjct: 288 KTYFGGGTAAAYLAGEDFYIPRESVAERFEDGTISFLDVIALKHGFDALENLTGGMECIR 347
Query: 354 -NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412
+ F L++YTY L Y NG P+V +Y D+++ + QG +++FN+L DG GYS+
Sbjct: 348 QHTFTLARYTYASLTALRYPNGAPVVRIYSDSEFSSPEVQGPVISFNVLDDDGNIIGYSQ 407
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICXXXXXXXXXXPTGSIR 472
V +A+L I +RTGC CN G+CQR LG+SD +K H Q GH+C PTGS+R
Sbjct: 408 VDKMASLHNIHVRTGCFCNTGACQRHLGISDEMVKKHLQAGHVCGDDMDLIDGQPTGSVR 467
Query: 473 ISYGHASNWDDVKYFLSFL 491
IS+G+ S +D + FL F+
Sbjct: 468 ISFGYMSTLEDAQAFLRFI 486
|
|
| UNIPROTKB|B0WSX1 mal2 "Molybdenum cofactor sulfurase 2" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 1152 (410.6 bits), Expect = 6.2e-117, P = 6.2e-117
Identities = 254/683 (37%), Positives = 388/683 (56%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGSFIYLTDNHTSVLGMR 165
+DQ+R ++L++F T Y ++FTSG T A+K V+E F+F +EG+F+Y DNHTSVLGMR
Sbjct: 69 LDQVRFRVLRHFGTHPSEYGLVFTSGTTGALKLVAECFDFGDEGAFVYTRDNHTSVLGMR 128
Query: 166 ELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225
+V T +I +D R +SL V+PA+ NF+G KYPL
Sbjct: 129 AVVGTERIVPIGREDLRG----------GRSTGGGKSSLVVFPAQCNFNGFKYPLGLVED 178
Query: 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285
+ RN + F R + V LDAA++ +N LDL +HQP F+ +SFYK+FG+PTGLGAL
Sbjct: 179 IQRNGLVG--FDGDRFH--VCLDAASFVSTNALDLAKHQPSFVCLSFYKIFGFPTGLGAL 234
Query: 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
+V + + ++L K +YGGGTVKI+MA NFH+K+D L ++FEDGTV + +IISL GF+T+
Sbjct: 235 LVHRSAQNLLKKRYYGGGTVKIAMAGRNFHVKRDSLADQFEDGTVPFTSIISLLQGFETL 294
Query: 346 EK------KRKSFT----NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395
E+ + S + F L +Y + + L ++N +V+LYHDT++ + QG I
Sbjct: 295 ERLVPASGELSSIDRVSRHTFALGRYCFQRLRGLRHANSNSVVKLYHDTEFEDRGSQGGI 354
Query: 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455
VNFN+LH+DG++ G++EV +A++ + LRTGC CNPG+CQR L L+D + F GH+
Sbjct: 355 VNFNVLHEDGSFVGFAEVAYMASVHNVVLRTGCFCNPGACQRLLELTDEDVLKQFNAGHV 414
Query: 456 CXXXXXXXXXXPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRA 515
C PTGS+R+S+G+ S +DV + + + ++++ + G L Q
Sbjct: 415 CGDANDLIGGQPTGSVRVSFGYMSRREDVDRLVEMVEKCYVKK--MTANG---LTRKQIV 469
Query: 516 ESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSG 575
+ K + + KL I ++P+K+CG +K+ + W + GLK DR+++I+ +G
Sbjct: 470 SNYKNY---------DQPKLKMICLFPIKSCGAYKITTSWPLCHKGLKHDREFVIVDENG 520
Query: 576 VPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGS-TVEIG-IDNEG--LDLCTSKVCSDK 631
V +TQK +CL++P DI N + L + + + T+ + + NE + LC +KVC D
Sbjct: 521 VAMTQKKLVEMCLIKPKIDIKTNTLILTHPAMENFTLSMEPLSNESQSIKLCQTKVCQDN 580
Query: 632 ITGFDCGNAVANWLDEQLNRKGX-----XXXXXXXXXXXXXXXXFSNMGQYLLITLPSIQ 686
+ DCG+AVANW+ L G SN Q+LLI S++
Sbjct: 581 VQAIDCGDAVANWISIALQTSGLRLLKQSDDEARTLRKSTTEIALSNQAQFLLINQASVR 640
Query: 687 --AQL----ENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVT 740
A L ++L+ LE+ V+RFR N ++ + E+ W Q+ I G L F V
Sbjct: 641 WLADLVPDWDDLSQEPTLESLVDRFRGNLIIDS-VKPLEESSWTQLRI----GPLEFSVD 695
Query: 741 SQCTRCQYIYIDQETALNTDVPL 763
C+RCQ I IDQ + T PL
Sbjct: 696 GPCSRCQMICIDQSSGTRTAEPL 718
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A2QIK9 | MOCOS_ASPNC | 2, ., 8, ., 1, ., 9 | 0.2987 | 0.8159 | 0.8080 | yes | N/A |
| Q14CH1 | MOCOS_MOUSE | 2, ., 8, ., 1, ., 9 | 0.3746 | 0.8478 | 0.8016 | yes | N/A |
| A2VD33 | MOCOS_DANRE | 2, ., 8, ., 1, ., 9 | 0.3730 | 0.8490 | 0.8327 | yes | N/A |
| Q9C5X8 | MOCOS_ARATH | 2, ., 8, ., 1, ., 9 | 0.3173 | 0.8355 | 0.8315 | yes | N/A |
| Q7QFL7 | MOCOS_ANOGA | 2, ., 8, ., 1, ., 9 | 0.3611 | 0.8269 | 0.8753 | yes | N/A |
| Q21657 | MOCOS_CAEEL | 2, ., 8, ., 1, ., 9 | 0.3301 | 0.7607 | 0.8744 | yes | N/A |
| Q29GM0 | MOCOS_DROPS | 2, ., 8, ., 1, ., 9 | 0.3421 | 0.8368 | 0.8611 | yes | N/A |
| Q96EN8 | MOCOS_HUMAN | 2, ., 8, ., 1, ., 9 | 0.3661 | 0.8417 | 0.7725 | yes | N/A |
| Q559G8 | MOCOS_DICDI | 2, ., 8, ., 1, ., 9 | 0.3406 | 0.8466 | 0.6852 | yes | N/A |
| Q9VRA2 | MOCOS_DROME | 2, ., 8, ., 1, ., 9 | 0.3512 | 0.8368 | 0.8732 | yes | N/A |
| Q655R6 | MOCOS_ORYSJ | 2, ., 8, ., 1, ., 9 | 0.3289 | 0.8392 | 0.8300 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 815 | |||
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 1e-155 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 7e-36 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 6e-23 | |
| pfam03476 | 118 | pfam03476, MOSC_N, MOSC N-terminal beta barrel dom | 3e-19 | |
| COG3217 | 270 | COG3217, COG3217, Uncharacterized Fe-S protein [Ge | 2e-15 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 2e-15 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 4e-13 | |
| pfam00639 | 94 | pfam00639, Rotamase, PPIC-type PPIASE domain | 1e-11 | |
| TIGR02006 | 402 | TIGR02006, IscS, cysteine desulfurase IscS | 2e-09 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 4e-08 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 3e-07 | |
| pfam13616 | 114 | pfam13616, Rotamase_3, PPIC-type PPIASE domain | 6e-07 | |
| PRK03095 | 287 | PRK03095, prsA, peptidylprolyl isomerase; Reviewed | 7e-07 | |
| PRK02998 | 283 | PRK02998, prsA, peptidylprolyl isomerase; Reviewed | 3e-06 | |
| PRK03002 | 285 | PRK03002, prsA, peptidylprolyl isomerase; Reviewed | 4e-06 | |
| pfam03473 | 124 | pfam03473, MOSC, MOSC domain | 6e-06 | |
| COG0760 | 320 | COG0760, SurA, Parvulin-like peptidyl-prolyl isome | 8e-06 | |
| PRK14012 | 404 | PRK14012, PRK14012, cysteine desulfurase; Provisio | 3e-05 | |
| PTZ00356 | 115 | PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom | 5e-05 | |
| TIGR03235 | 353 | TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | 1e-04 | |
| PRK15441 | 93 | PRK15441, PRK15441, peptidyl-prolyl cis-trans isom | 0.003 | |
| PRK00059 | 336 | PRK00059, prsA, peptidylprolyl isomerase; Provisio | 0.003 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Score = 472 bits (1215), Expect = e-155
Identities = 258/748 (34%), Positives = 402/748 (53%), Gaps = 73/748 (9%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
LK + YLD+ GA +YS+SQ+ + N++ +PH S S I+ R ++L+YF
Sbjct: 32 LKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF 91
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFN-EGSFIYLTDNHTSVLGMRE--LVKTNQIYS 175
N Y+ +FTSGAT+A+K V E F ++ E F Y +NH SVLG+RE L K +
Sbjct: 92 NAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIA 151
Query: 176 FSVDDARN-----------------MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218
+++A N N K + E+ + +LF +P+E NFSG K+
Sbjct: 152 VDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKR--EDDGEAYNLFAFPSECNFSGAKF 209
Query: 219 PLSWCNTVHRNHVFKKHFKCSRSNCF-VLLDAATYCGSNMLDLKQHQPDFISISFYKMFG 277
PL + N +H S+S + VLLDAA CG++ DL ++ DF+ +SFYK+FG
Sbjct: 210 PLDLVKLIKDN----QHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFG 265
Query: 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337
YPTGLGAL+V++ +A +L K ++GGGTV S+A+ +F +++ + ++FEDGT+++L+I +
Sbjct: 266 YPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAA 325
Query: 338 LKYGFDTMEKKRKSFTN--AFELSQYTYFYFKQLSYSNGQPLVELY--HDTDYGESKYQG 393
L++GF + + S + L+ Y + L + NG P+ LY H E QG
Sbjct: 326 LRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKL-EFHIQG 384
Query: 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453
IV FNL DG++ G+ EV+ LA+L IQLRTGC CNPG+C ++LGLS ++ +F+ G
Sbjct: 385 PIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAG 444
Query: 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQ 513
H+C DD+D+I G+PTG++R+S+G+ S ++D + F+ F+ F+ +
Sbjct: 445 HVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVSTPKKRGNVTL------ 498
Query: 514 RAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITH 573
R++ + + ++L SI +YP+K+C F VE +W ++ +GL +DR+WMI +
Sbjct: 499 RSKRTIPLPVLERKESFDSHRLKSITVYPIKSCAGFSVE-RWPLSETGLLYDREWMIQSL 557
Query: 574 SGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKV--CSDK 631
+G LTQK +CL+ D+ + + +EI ++++ + +V C ++
Sbjct: 558 TGEILTQKKVPEMCLITTFIDLESGKLVVRAPRCDHKLEIPLESDSQHEESGEVILCGNR 617
Query: 632 ITGFDCGNAVANWLDEQLNRKGLRLIR--ISKRSSKRNIN-------------SFSNMGQ 676
G + W L R+ L+R S RN N SF+N GQ
Sbjct: 618 AESMSYGTEINEWFTNALGRR-CTLVRKSSSNTRVCRNRNPSHSPCGDDESRLSFANEGQ 676
Query: 677 YLLITLPSIQAQLENLNAIFELENFVN-------RFRSNFVVSGQFEANAENDWDQVLIE 729
+LLI+ +A +E+LN RFR N VVSG EA AE++W + I
Sbjct: 677 FLLIS----EASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGG-EAYAEDEWQSLSI- 730
Query: 730 TNDGLLSFQVTSQCTRCQYIYIDQETAL 757
G F V C RCQ I IDQET L
Sbjct: 731 ---GDAEFTVLGGCNRCQMINIDQETGL 755
|
Length = 805 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 7e-36
Identities = 87/413 (21%), Positives = 149/413 (36%), Gaps = 70/413 (16%)
Query: 60 KDICYLDYTGAGVYSQS---QMNQTIEQLKENI--FSHPHGNSVLSDFCVSEIDQMRTKI 114
K + YLD Q+ + + + N+ +H + R +
Sbjct: 21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEA-----TDLYEAAREAV 75
Query: 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYF--EFNEGSFIYLTDN--HTSVLGMREL--- 167
++ N DS ++FT G T A+ V+ G I ++D H++++ +EL
Sbjct: 76 ARFLNADSSD-EIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKR 134
Query: 168 -------VKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220
+ + +D ++ L SN +GT P+
Sbjct: 135 TGAKVRVIPLDDDGLLDLDALEKLITP-------------KTKLVALSHVSNVTGTVNPV 181
Query: 221 SW-CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP 279
H + VL+DAA G +D+++ DF++ S +K P
Sbjct: 182 KEIAELAHEH------------GALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGP 229
Query: 280 TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339
TG+G L V+++ L GGG ++ +E + + L +FE GT N I L
Sbjct: 230 TGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPL--RFEAGTPNIAGAIGLA 287
Query: 340 YGFDTMEKKRKSFTNAFE--LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVN 397
D + + A E L++Y +L P VE+Y D +G IV+
Sbjct: 288 AALDYLLEIGMEAIEAHERELTEYLLEGLSEL------PGVEIYGPPDAD----RGGIVS 337
Query: 398 FNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450
FN+ +V L + K I +R G HC + + I H
Sbjct: 338 FNVKGIHP-----HDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHL 385
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 83/399 (20%), Positives = 135/399 (33%), Gaps = 91/399 (22%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE--FNEG-SFIYLTDNHTSV-- 161
++ R K+ ++ N SD +IFTSG T AI V+ G + H +
Sbjct: 45 YEEAREKVAEFINAPSD-EEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLV 103
Query: 162 ----LGMRELVKTNQIYSFSVDDARNM-LNEFKESQENVENMRHSNSLFVYPAESNFSGT 216
L R + VD + L+ ++ + L SN +GT
Sbjct: 104 PWQELAKRTGAT---VRVIPVDPNGLLDLDALEK------LLTPRTKLVAITHVSNVTGT 154
Query: 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMF 276
N V K V++DAA G +D++ DF++ S +K++
Sbjct: 155 ------VNPVEE---IGKLAH--EYGALVVVDAAQAVGHRPIDVQALGVDFLAFSGHKLY 203
Query: 277 GYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336
G PTG+G L ++ L GGG + KFE GT N II
Sbjct: 204 G-PTGIGVLYGRRDLLEKLPPLLGGGGMIDTV---SLQETTFADAPSKFEAGTPNIAGII 259
Query: 337 SL--------KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGE 388
L + G + +EK + EL+ Y Y + P + LY
Sbjct: 260 GLGAALDYLAEIGLEAIEKHER------ELAAYLYERLLAI------PGIRLYGPPA--- 304
Query: 389 SKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448
+ + +I++FN +V L + + I +R+G HC R
Sbjct: 305 -ERRPSIISFNF-----PGVHPHDVATLLDERGIAVRSGHHCAQPLMVRL---------- 348
Query: 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487
G++R S + ++V
Sbjct: 349 -----------------GLGGTLRASLYFYNTEEEVDRL 370
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-19
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 534 KLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNF 593
++ S+++YP+K+C + +T +GL++DR+WM++ G +T + L L++
Sbjct: 3 RVSSLFVYPIKSCRGESLSRAE-LTPAGLRWDRRWMVVDSDGKFITARRHPRLVLIRTTL 61
Query: 594 DITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQL 649
D +TL + + + L V +G DCG+A A+W + L
Sbjct: 62 D-EDGGLTLTA-PGMPPLSVPLAANKFQLVGVLVWGLSFSGRDCGDAAADWFSDFL 115
|
This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold. Length = 118 |
| >gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 57/230 (24%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 534 KLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPN- 592
L +YIYPVK+ ++ V ASGL DR++M++ G +T + + P
Sbjct: 3 TLSQLYIYPVKSLRGERLSRAL-VDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAY 61
Query: 593 FDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRK 652
+ V +V D T G+A +WL L R
Sbjct: 62 EHDGLRLTAP--DGEELYVRFADAQ----RAPVEVWGDHFTADAAGDAANDWLSGFLGRA 115
Query: 653 GLRLIRISKRSSKR------NINSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFR 706
+ L ++R +F++ LL S+ + A E+E RFR
Sbjct: 116 -VSLRWDGAGFARRVKAGPAVPVTFADGYPILLFNTASLADLRRRVPANLEME----RFR 170
Query: 707 SNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETA 756
N VV G+ +A AE+ W + I G + F V C+RC + +D +T
Sbjct: 171 PNLVVEGE-DAFAEDSWKSIRI----GGVRFDVVKPCSRCIFTTVDPDTG 215
|
Length = 270 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 86/406 (21%), Positives = 146/406 (35%), Gaps = 61/406 (15%)
Query: 85 LKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF 144
K S G L+ E+++ R + + FN V+FT+ AT+A+ +
Sbjct: 24 YKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-PSSAHVVFTNNATTALNIALKGL 82
Query: 145 EFNEGSFIYLTD-NHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNS 203
EG + T H SV R L + + + NE S E ++ +N+
Sbjct: 83 -LKEGDHVITTPMEHNSV--ARPLECLKEQIGVEITIVKCD-NEGLISPERIKRAIKTNT 138
Query: 204 -LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262
L V SN +GT P+ + + + F +LDAA G +D+ +
Sbjct: 139 KLIVVSHASNVTGTILPIEEIGELAQEN-----------GIFFILDAAQTAGVIPIDMTE 187
Query: 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322
D ++ + +K P G G L +++ K GGT ++ + L
Sbjct: 188 LAIDMLAFTGHKGLLGPQGTGGLYIREGIKL---KPLKSGGT----GSHSALIDQPSELP 240
Query: 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382
++FE GT+N I L G +EK + E L V++Y
Sbjct: 241 DRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKL-LNGL--REINK-VKIYG 296
Query: 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442
D + +V+F + D L I RTG HC P + + +G
Sbjct: 297 PADPAN---RVGVVSFTVEGIDSEEVA----DILDEKFDIATRTGLHCAPLA-HKTIGT- 347
Query: 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488
TG+IR+S G+ + ++++ L
Sbjct: 348 -----------------------FATGTIRLSLGYFNTEEEIEKLL 370
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 4e-13
Identities = 85/399 (21%), Positives = 158/399 (39%), Gaps = 62/399 (15%)
Query: 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPH-GNSVLSDFCVSEIDQMRTKILQ 116
+ K + YLD + A Q+ + + N ++ H G LS + +R K+ +
Sbjct: 15 NGKPLVYLD-SAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAK 73
Query: 117 YFNTDSDHYSVIFTSGATSAIKTVSEYF---EFNEGSFIYLT--DNHTSVLGMRELVKTN 171
+ N SD ++FT G T +I V+ + G I ++ ++H +++ + L +
Sbjct: 74 FINAASDE-EIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERT 132
Query: 172 --QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFV-YPAESNFSGTKYPLSWCNTVHR 228
+ +DD + +++E + + V SN GT P+
Sbjct: 133 GATLKFIPLDD------DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVE--EIAKL 184
Query: 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288
H + VL+D A +D++ DF S +KM+G PTG+G L K
Sbjct: 185 AH---------QVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYG-PTGIGVLYGK 234
Query: 289 QKSAHVLNKTFYGGGTVK-ISMANENFHIKKDGLFEKFEDGTVNYLAIISL--------K 339
++ + GG + +S + + KFE GT N +I L
Sbjct: 235 EELLEQMPPFLGGGEMIAEVSFEETTY----NEAPHKFEAGTPNIAGVIGLGAAIDYLEA 290
Query: 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399
G + +E EL+ Y ++ P + +Y D + +G I++FN
Sbjct: 291 IGLENIEAHEH------ELTAYALERLGEI------PGLRIYGPRDAED---RGGIISFN 335
Query: 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
+ +G + +V + + + I +R+G HC +RF
Sbjct: 336 V---EGVH--PHDVGTILDEEGIAVRSGHHCAQPLMRRF 369
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-11
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLGW RG + EF+DAAF L + P++T FGYHII V
Sbjct: 51 GDLGWFTRGQLPPEFEDAAFSLKEGEI------SGPVETPFGYHIIKVTD 94
|
Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94 |
| >gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 37/252 (14%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSE-IDQMRTKILQYFNTDS 122
YLDY + + L E F +P S + E ++ R ++ + DS
Sbjct: 6 YLDYAATTPVDPRVAEKMMPYLTEK-FGNPASRSHSFGWEAEEAVENARNQVAELIGADS 64
Query: 123 DHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNHTSVL-GMRELVKTNQIYSFS 177
++FTSGAT AIK ++ +++ I H +VL R L + F
Sbjct: 65 RE--IVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLERE----GFE 118
Query: 178 V------DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231
V + L E K +R L +N G ++ +
Sbjct: 119 VTYLPPKSNGLIDLEELKA------AIRDDTILVSIMHVNNEIGVIQDIAAIGEI----- 167
Query: 232 FKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291
C F +DAA G +++ + + D +SIS +K++G P G+GAL V++K
Sbjct: 168 ------CRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYG-PKGIGALYVRRKP 220
Query: 292 AHVLNKTFYGGG 303
L +GGG
Sbjct: 221 RVRLEALIHGGG 232
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 4e-08
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 245 VLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGT 304
VL+D A G +D++ DF++ S +KM G PTG+G L K+ + YGGG
Sbjct: 172 VLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLG-PTGIGVLYGKE--ELLEEMPPYGGGG 228
Query: 305 VKISMANENF--HIKKDGLFEKFEDGTVNYLAIISL--------KYGFDTMEKKRKSFTN 354
M E L KFE GT N I L K G + +
Sbjct: 229 ---EMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEH---- 281
Query: 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL--LHKDGTYYGYSE 412
EL+ Y ++LS G V + YG+++ + +V+FNL +H +
Sbjct: 282 --ELTAYAL---ERLSEIPG---VRV-----YGDAEDRAGVVSFNLEGIHP-------HD 321
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRF 438
V + + I +R G HC +R
Sbjct: 322 VATILDQYGIAVRAGHHCAQPLMRRL 347
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 23/206 (11%)
Query: 103 CVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTDNH 158
+++ R ++ D +IFTSGAT AIK V +++ + I H
Sbjct: 41 SEDAVEKARAQVAALIGADPK--EIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEH 98
Query: 159 TSVLG-MRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217
VL R L + ++ + +++ E +R +L A +N G
Sbjct: 99 KCVLDSCRHLQQEGFEVTYLPVKSDGLVD----LDELAAAIRPDTALVSVMAVNNEIGVI 154
Query: 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFG 277
P+ + C DAA G +D+ D +SIS +K++G
Sbjct: 155 QPVEEIGEL-----------CREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYG 203
Query: 278 YPTGLGALIVKQKSAHVLNKTFYGGG 303
P G+GAL V+++ L GGG
Sbjct: 204 -PKGVGALYVRRRPRVRLEPLMSGGG 228
|
Length = 364 |
| >gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 6 GDLGWVV-RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW G MV EF DA F L + + ++T FGYHII V K
Sbjct: 69 GDLGWFTASGQMVKEFIDALFTLKVGEIG-------VVETPFGYHIIQVTDK 113
|
Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114 |
| >gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 6/48 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 53
GDLG+ G MV EF+DAA+KL V+ PV K++FGYHII V
Sbjct: 177 GDLGFFGAGKMVKEFEDAAYKLKKDEVSEPV------KSQFGYHIIKV 218
|
Length = 287 |
| >gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60
G++ G V EF++AA+KL V+ PV KT +GYHII V K LK
Sbjct: 179 GEISGFAPGQTVKEFEEAAYKLDAGQVSEPV------KTTYGYHIIKVTDKKELK 227
|
Length = 283 |
| >gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 4e-06
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60
GDLG+ G M EF+ AA+KL + ++NPV K+ GYHII + K LK
Sbjct: 181 GDLGYFNSGRMAPEFETAAYKLKVGQISNPV------KSPNGYHIIKLTDKKDLK 229
|
Length = 285 |
| >gnl|CDD|217583 pfam03473, MOSC, MOSC domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 18/116 (15%)
Query: 668 INSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW---D 724
+ LLI+ S+ A L + L+ RFR N VVSG E+ W D
Sbjct: 12 RVHGGDERAVLLISRESL-ADLNARLGLRLLDP--GRFRENLVVSGL----EEDTWCIGD 64
Query: 725 QVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPLGEYQTRNFSTVSLNVKE 780
++ I G+L +V+ C C + +DQET +G Y + V
Sbjct: 65 RIRI---GGVL-LEVSGPCKPCVMLCVDQETGER----VGRYLAAGKRGIYARVLR 112
|
The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms, or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulfur-metal clusters. Length = 124 |
| >gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 8e-06
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKDICYL 65
G LGW +G +V EF+ AAF L + P +KT FGYHII VE K K
Sbjct: 218 GLLGWNKKGQLVPEFRKAAFILK-----VGEVSAP-VKTSFGYHIIKVEKKRDAKLDFPE 271
Query: 66 DYTGAGVYSQSQMNQTIEQLKEN 88
+ + ++ Q K
Sbjct: 272 VKAVKEISLKQELLQKAALEKLL 294
|
Length = 320 |
| >gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 64/283 (22%), Positives = 104/283 (36%), Gaps = 71/283 (25%)
Query: 86 KENIFSHPHGNSVLSDFCVSE-IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTV 140
+ F +P S + E +D R +I +D ++FTSGAT AIK
Sbjct: 29 MDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIG--ADPREIVFTSGATESDNLAIKGA 86
Query: 141 SEYFEFNEGSFIYLTDNHTSVL-GMREL-----------VKTNQIYSFSVDDARNMLNEF 188
+ +++ I H +VL R+L ++N I +D L +
Sbjct: 87 AHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGI----ID-----LEKL 137
Query: 189 KESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248
+ MR L +N G ++ + R +D
Sbjct: 138 EA------AMRDDTILVSIMHVNNEIGVIQDIAAIGEICRER-----------GIIFHVD 180
Query: 249 AATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG------ 302
AA G +DL + + D +S S +K++G P G+GAL V++K L +GG
Sbjct: 181 AAQSVGKVPIDLSKLKVDLMSFSAHKIYG-PKGIGALYVRRKPRVRLEAQMHGGGHERGM 239
Query: 303 --GTV---------------KISMANENFHIKKDGLFEKFEDG 328
GT+ K MA EN I+ L ++ +G
Sbjct: 240 RSGTLPTHQIVGMGEAARIAKEEMATENERIRA--LRDRLWNG 280
|
Length = 404 |
| >gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHII 51
GDLG+ RG M F+DAAF L + +++ V+T+ G HII
Sbjct: 72 GDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDS------GVHII 111
|
Length = 115 |
| >gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 38/211 (18%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGSFIYLTD--NHTS 160
+++ R ++ + D++ VIFTSGAT AI ++ E +G +T H +
Sbjct: 44 VERARKQVAEALGADTEE--VIFTSGATESNNLAILGLARAGE-QKGKKHIITSAIEHPA 100
Query: 161 VLGMRELVKTNQIYSFSVD------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214
VL ++ N F+V R ++E ++ +R L +N +
Sbjct: 101 VLEPIRALERN---GFTVTYLPVDESGRIDVDELADA------IRPDTLLVSIMHVNNET 151
Query: 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYK 274
G+ P+ V H F +DAA G +DL + D IS S +K
Sbjct: 152 GSIQPIREIAEVLEAH-----------EAFFHVDAAQVVGKITVDLSADRIDLISCSGHK 200
Query: 275 MFGYPTGLGALIVKQ--KSAHVLNKTFYGGG 303
++G P G+GAL++++ K L +GGG
Sbjct: 201 IYG-PKGIGALVIRKRGKPKAPLKPIMFGGG 230
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353 |
| >gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.003
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEP--PIKTKFGYHIIMVEGKN 57
GDLG +G MV F F P+ EP P+ T+FGYHII V +N
Sbjct: 48 GDLGEFRQGQMVPAFDKVVFSCPV--------LEPTGPLHTQFGYHIIKVLYRN 93
|
Length = 93 |
| >gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 5 SGDLGWV--VRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLG V EF D A L ++ PV KT+FGYHII K
Sbjct: 240 GGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPV------KTQFGYHIIKAIKK 287
|
Length = 336 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 815 | |||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG3217 | 270 | Uncharacterized Fe-S protein [General function pre | 100.0 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| KOG2362|consensus | 336 | 100.0 | ||
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| KOG1549|consensus | 428 | 100.0 | ||
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| KOG2142|consensus | 728 | 100.0 | ||
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.97 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.97 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.96 | |
| PF03476 | 120 | MOSC_N: MOSC N-terminal beta barrel domain; InterP | 99.96 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.96 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.96 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.95 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.95 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.95 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.95 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.95 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.95 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.95 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.94 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.94 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.94 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.94 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.93 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.92 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.92 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.92 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.91 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.91 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.9 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.9 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.9 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.9 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.9 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.9 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.9 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.9 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.9 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.89 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.89 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.89 | |
| KOG2862|consensus | 385 | 99.89 | ||
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.89 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.89 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.89 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.89 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.89 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.88 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.88 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.88 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.88 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK07324 | 373 | transaminase; Validated | 99.88 | |
| PLN02721 | 353 | threonine aldolase | 99.88 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.88 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.88 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.88 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.87 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.87 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.87 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.87 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.87 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.87 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.87 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.87 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.87 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.87 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.87 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.87 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.87 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.87 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.87 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.87 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.87 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.86 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.86 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.86 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.86 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.86 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.86 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.86 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.86 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.86 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.86 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.86 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.86 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.86 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.86 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.86 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.86 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.85 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.85 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.85 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.85 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.85 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.85 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.85 | |
| PLN02187 | 462 | rooty/superroot1 | 99.85 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.85 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.85 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.85 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.85 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.85 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.85 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.85 | |
| PLN02656 | 409 | tyrosine transaminase | 99.85 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.85 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.85 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.85 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.84 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.84 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.84 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.84 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.84 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.84 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.84 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.84 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.84 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.84 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.84 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.84 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.84 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.84 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.83 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.83 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.83 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.83 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.83 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.83 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.83 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.83 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.83 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.83 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.83 | |
| KOG0257|consensus | 420 | 99.83 | ||
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.83 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.83 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.83 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.83 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.82 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.82 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.82 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.82 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.82 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.82 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.81 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.81 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.81 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.81 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.81 | |
| PLN02263 | 470 | serine decarboxylase | 99.81 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.8 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.8 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.8 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.8 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.8 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.8 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.8 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.8 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.79 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.79 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.79 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.79 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.79 | |
| PLN02231 | 534 | alanine transaminase | 99.79 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.79 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.79 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.79 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.79 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.79 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.78 | |
| KOG3846|consensus | 465 | 99.78 | ||
| PF03473 | 133 | MOSC: MOSC domain; InterPro: IPR005302 Molybdenum | 99.78 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.78 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.77 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.77 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.76 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.76 | |
| KOG1368|consensus | 384 | 99.76 | ||
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.76 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.76 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.75 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.75 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.75 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.75 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.74 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.73 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.72 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.72 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.72 | |
| KOG1359|consensus | 417 | 99.72 | ||
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.71 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.71 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.71 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.71 | |
| KOG0259|consensus | 447 | 99.71 | ||
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.7 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.7 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.7 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.7 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.69 | |
| PLN02368 | 407 | alanine transaminase | 99.69 | |
| KOG0053|consensus | 409 | 99.69 | ||
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.68 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.68 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.66 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.66 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.66 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.65 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.65 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.64 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.63 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.63 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.6 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.59 | |
| PLN02397 | 423 | aspartate transaminase | 99.59 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.59 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.58 | |
| KOG0256|consensus | 471 | 99.58 | ||
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.58 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.57 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.57 | |
| KOG1360|consensus | 570 | 99.56 | ||
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.54 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.53 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.52 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.52 | |
| KOG0633|consensus | 375 | 99.52 | ||
| KOG3258|consensus | 133 | 99.51 | ||
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.49 | |
| KOG1357|consensus | 519 | 99.49 | ||
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.49 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.48 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.47 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.44 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.44 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.43 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.41 | |
| KOG0634|consensus | 472 | 99.4 | ||
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.37 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.37 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.36 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.36 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.35 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.34 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.34 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.33 | |
| KOG1383|consensus | 491 | 99.33 | ||
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.33 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.32 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.3 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.29 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.29 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.28 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.27 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.26 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.26 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.25 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.24 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.24 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.23 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.23 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.22 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.22 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.22 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.22 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.22 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.21 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.2 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.2 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.19 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.19 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.17 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.17 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.16 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.15 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.14 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.14 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.13 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.11 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.11 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.11 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.11 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.08 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.08 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.07 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.06 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.05 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.05 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.04 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.03 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.02 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.02 | |
| KOG2467|consensus | 477 | 99.02 | ||
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.01 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.0 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.0 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.0 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.99 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 98.99 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.99 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.99 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 98.98 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 98.98 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 98.96 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 98.96 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 98.96 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 98.96 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.95 | |
| KOG0258|consensus | 475 | 98.93 | ||
| KOG2790|consensus | 370 | 98.93 | ||
| PRK07046 | 453 | aminotransferase; Validated | 98.93 | |
| KOG1402|consensus | 427 | 98.92 | ||
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.9 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.88 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.88 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.87 | |
| KOG1358|consensus | 467 | 98.85 | ||
| PRK15441 | 93 | peptidyl-prolyl cis-trans isomerase C; Provisional | 98.84 | |
| KOG0629|consensus | 510 | 98.8 | ||
| PF13616 | 117 | Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3 | 98.79 | |
| PF00639 | 95 | Rotamase: PPIC-type PPIASE domain; InterPro: IPR00 | 98.78 | |
| KOG0628|consensus | 511 | 98.77 | ||
| KOG1404|consensus | 442 | 98.74 | ||
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.67 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.66 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 98.62 | |
| TIGR02933 | 256 | nifM_nitrog nitrogen fixation protein NifM. Member | 98.62 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 98.57 | |
| PTZ00356 | 115 | peptidyl-prolyl cis-trans isomerase (PPIase); Prov | 98.56 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.56 | |
| KOG2040|consensus | 1001 | 98.48 | ||
| PRK12450 | 309 | foldase protein PrsA; Reviewed | 98.46 | |
| PRK01326 | 310 | prsA foldase protein PrsA; Reviewed | 98.4 | |
| PRK04405 | 298 | prsA peptidylprolyl isomerase; Provisional | 98.38 | |
| PRK02998 | 283 | prsA peptidylprolyl isomerase; Reviewed | 98.35 | |
| PRK03002 | 285 | prsA peptidylprolyl isomerase; Reviewed | 98.34 | |
| PRK10770 | 413 | peptidyl-prolyl cis-trans isomerase SurA; Provisio | 98.33 | |
| PRK10770 | 413 | peptidyl-prolyl cis-trans isomerase SurA; Provisio | 98.32 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.29 | |
| PRK03095 | 287 | prsA peptidylprolyl isomerase; Reviewed | 98.25 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.11 | |
| KOG1403|consensus | 452 | 97.96 | ||
| PRK10788 | 623 | periplasmic folding chaperone; Provisional | 97.95 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 97.92 | |
| PRK00059 | 336 | prsA peptidylprolyl isomerase; Provisional | 97.84 | |
| KOG1401|consensus | 433 | 97.81 | ||
| COG0760 | 320 | SurA Parvulin-like peptidyl-prolyl isomerase [Post | 97.51 | |
| KOG1412|consensus | 410 | 97.41 | ||
| KOG2040|consensus | 1001 | 97.32 | ||
| KOG1405|consensus | 484 | 96.05 | ||
| KOG2142|consensus | 728 | 95.6 | ||
| PRK14499 | 308 | molybdenum cofactor biosynthesis protein MoaC/MOSC | 95.54 | |
| KOG1411|consensus | 427 | 95.52 | ||
| PF13145 | 121 | Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2 | 94.05 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 93.42 | |
| KOG3843|consensus | 432 | 89.01 | ||
| PRK11536 | 223 | 6-N-hydroxylaminopurine resistance protein; Provis | 84.86 |
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-110 Score=998.65 Aligned_cols=722 Identities=34% Similarity=0.613 Sum_probs=596.3
Q ss_pred ccccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 54 EGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 54 ed~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
.+|+.++..+|||+++++++++.+++++.+.+....++||++.+.....+...++++|+.+++++|+++++|.|+||+|+
T Consensus 27 ~~fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsna 106 (805)
T PLN02724 27 TEFARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGA 106 (805)
T ss_pred HHhhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCCh
Confidence 46777777899999999998877777776666556678998765444545556999999999999998877779999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcC--------chhhhcc--hhhhhhhhh-h--h
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFS--------VDDARNM--LNEFKESQE-N--V 195 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~--------~~~~~~~--~~~~~~l~~-~--~ 195 (815)
|+|+++++.++.+++|| ||++..+|+++..|.+++++.| +++++ ..+.++. +.+++.++. + .
T Consensus 107 T~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~ 186 (805)
T PLN02724 107 TAALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKR 186 (805)
T ss_pred HHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccc
Confidence 99999999999888998 8889999999999888887777 34443 1111221 222221100 0 0
Q ss_pred hhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-----CCeEEEEecccccCCCCCCCCCCCCcEEEE
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-----SNCFVLLDAATYCGSNMLDLKQHQPDFISI 270 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-----~gi~vivD~a~~~g~~~~dl~~~~~D~vv~ 270 (815)
....++|++|++++++|.||.++|+++|..+++.. .. .+++++||++|++|+.++|+..+++||+++
T Consensus 187 ~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~--------~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~ 258 (805)
T PLN02724 187 EDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQ--------HSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVV 258 (805)
T ss_pred cccCCCcceEEEEccccCCCCcCCHHHHHHHHHhc--------ccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEE
Confidence 11235679999999999999999999876655510 01 247899999999999999999999999999
Q ss_pred ccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh
Q psy16512 271 SFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350 (815)
Q Consensus 271 S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~ 350 (815)
|+|||||+|.|+|+|++++++.+.+.|.++||+++........+.......+.+|+.||+|+++++++.+|++++.+++.
T Consensus 259 S~HK~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~ 338 (805)
T PLN02724 259 SFYKIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTI 338 (805)
T ss_pred ecceeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhCh
Confidence 99999999999999999999888888999998876543333233223344578999999999999999999999998875
Q ss_pred hH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCC-CCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 351 SF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTD-YGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 351 ~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~-~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
.. +|..+|++++.+.|++++|.||.|+++++++.. ......++++++|++.+.++..+++.++.+++..+||.+|+|
T Consensus 339 ~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G 418 (805)
T PLN02724 339 SAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTG 418 (805)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeec
Confidence 44 999999999999999999999999999998641 111235789999999998888888888998889999999999
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcccccccc
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDI 507 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~~~~~~~ 507 (815)
++|+++.++.++|+++.++...+..|+.|||..+++++.+.|.||+|+|+|||++||++|+++|++.|++++......
T Consensus 419 ~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~~~~~~~~-- 496 (805)
T PLN02724 419 CFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVSTPKKRGNV-- 496 (805)
T ss_pred cccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcCCCCCCcc--
Confidence 999999998889999999999999999999999999998889999999999999999999999999999986542210
Q ss_pred ccccccccccccccccccCCCCCCccEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccc
Q psy16512 508 CLINNQRAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLC 587 (815)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~ 587 (815)
.+++...... ++ ..+.+....++|++|||||||||+|++|+ +|++++.||.|||+|||+|++|+++|||++|+|+
T Consensus 497 ~~~~~~~~~~-~~---~~~~~~~~~~~v~~l~iYPVKS~~g~~v~-~a~~~~~Gl~~DR~~~lvd~~g~~~t~r~~p~l~ 571 (805)
T PLN02724 497 TLRSKRTIPL-PV---LERKESFDSHRLKSITVYPIKSCAGFSVE-RWPLSETGLLYDREWMIQSLTGEILTQKKVPEMC 571 (805)
T ss_pred cccCcccccC-CC---ccccccCCCCEEEEEEEeccccCCCceee-EEEEecccccccceEEEEcCCCcEEEcccCceEE
Confidence 1111110000 00 01112237889999999999999999999 9999999999999999999999999999999999
Q ss_pred cccceeecCCCeEEEEeCCCCeeEEEecCCCC--CceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCC
Q psy16512 588 LVQPNFDITRNIMTLCYKSSGSTVEIGIDNEG--LDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSK 665 (815)
Q Consensus 588 ~i~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~ 665 (815)
+|++.++..++.|++++|+++.++.|++++.. .....+++|++++.+++||+++++|||++||+| |+|+++.+...|
T Consensus 572 ~i~~~~~~~~~~l~l~~~~~~~~l~v~l~~~~~~~~~~~v~v~~~~~~~~~~g~~~~~w~S~~lg~~-~~Lv~~~~~~~r 650 (805)
T PLN02724 572 LITTFIDLESGKLVVRAPRCDHKLEIPLESDSQHEESGEVILCGNRAESMSYGTEINEWFTNALGRR-CTLVRKSSSNTR 650 (805)
T ss_pred EEEeEEecCCCeEEEEcCCCCccEEEeCCCcccccccceeEEeCCcceeEecchhHHHHHHHHhCCc-eEEEEeCCcccc
Confidence 99999987889999999998646999998743 345789999999999999999999999999999 999999775433
Q ss_pred C---------------cccccccccceeeecHHhHHHHHHHhhhh---cCcccccccccceEEEcCCCCcccCCCcceEE
Q psy16512 666 R---------------NINSFSNMGQYLLITLPSIQAQLENLNAI---FELENFVNRFRSNFVVSGQFEANAENDWDQVL 727 (815)
Q Consensus 666 ~---------------~~~~f~d~~p~~l~s~~Sl~~l~~~l~~~---~~~~~~~~rFRpNivi~~~~~~~~Ed~w~~i~ 727 (815)
+ ..++|+|.+|++|+|++||++||+++++. ...+++++||||||||+|. +||+||.|++|+
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~faD~~p~llis~aSl~~Ln~~l~~~~~~~~~~v~~~RFRpNiVv~g~-~~f~ED~W~~l~ 729 (805)
T PLN02724 651 VCRNRNPSHSPCGDDESRLSFANEGQFLLISEASVEDLNRRLATGQEDAKIRLDPTRFRPNLVVSGG-EAYAEDEWQSLS 729 (805)
T ss_pred cccccccccccccCcCCceeecCCCceEEecHHHHHHHHHHhccccccccCCCcHHHccceEEECCC-CCccccCceEEE
Confidence 1 24789999999999999999999999742 1236899999999999999 999999999999
Q ss_pred EecCCCCeEEEecccCCCccccccCccCCCC--CCChhHHHHhccccccccCccccccccccc----ccceeeeeeeec
Q psy16512 728 IETNDGLLSFQVTSQCTRCQYIYIDQETALN--TDVPLGEYQTRNFSTVSLNVKEFFNNLEKT----YNQYNFCSSMIL 800 (815)
Q Consensus 728 Ig~~~~~~~~~~~~~~~RC~~~~vd~~tg~~--~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 800 (815)
|| +++|++++||.||+||||||+||++ +.|||+||++||+. +++++||++... .+.+++.++..+
T Consensus 730 IG----~~~~~~~~~C~RC~~~tvDp~tg~~~~~~epl~tL~~~R~~----~~~~~FG~~~~~~~~~~~~~~i~vGd~v 800 (805)
T PLN02724 730 IG----DAEFTVLGGCNRCQMINIDQETGLVNPSNEPLATLASYRRV----KGKILFGILLRYEISDKRDQWIAVGSRV 800 (805)
T ss_pred EC----CEEEEEecccCCCCCCcCCcccCccCCCCChHHHHHHHhCc----CCCCCccceeeccccCCCCcEEEeCCEE
Confidence 99 9999999999999999999999986 46999999999985 567888887633 455567777655
|
|
| >COG3217 Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=406.64 Aligned_cols=250 Identities=23% Similarity=0.328 Sum_probs=227.4
Q ss_pred cEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCeeEE
Q psy16512 533 NKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVE 612 (815)
Q Consensus 533 ~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~~~ 612 (815)
.+|++||||||||++|+.++ ++.+...||.+||+|||+|++|+++|+|++|.|.++.+.. ..+.+.++.++++ .+.
T Consensus 2 ~~ls~L~iyPvKSl~g~~l~-~a~v~~~Gl~~DR~fml~d~dG~~itar~~pa~~~~~~~~--~~~~~~l~~~~~~-~~~ 77 (270)
T COG3217 2 ATLSQLYIYPVKSLRGERLS-RALVDASGLAGDRRFMLVDPDGRFITARRRPAMVRFTPAY--EHDGLRLTAPDGE-ELY 77 (270)
T ss_pred ccchheeeeccccccchhhh-hheeeccCCccceEEEEEcCCCceeccccccceeEeeeec--cccceEEecCCCc-cce
Confidence 35999999999999999999 9999999999999999999999999999999999999966 7888999999998 888
Q ss_pred EecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCC------CcccccccccceeeecHHhHH
Q psy16512 613 IGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSK------RNINSFSNMGQYLLITLPSIQ 686 (815)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~------~~~~~f~d~~p~~l~s~~Sl~ 686 (815)
++..+ .+..+++||++.+.....++++++|||.|||++ ++|+..+.+..+ -...+|+|.+|++++|++||+
T Consensus 78 v~~~~--~~~~~~~vw~~~~~a~~~~~a~~d~lS~flg~~-v~L~~~~~~~~r~v~~~p~~~~~fadg~p~l~~~~aSl~ 154 (270)
T COG3217 78 VRFAD--AQRAPVEVWGDHFTADAAGDAANDWLSGFLGRA-VSLRWDGAGFARRVKAGPAVPVTFADGYPILLFNTASLA 154 (270)
T ss_pred eeccc--cccccceeeccccccccchhHHHHHHHhhhcee-eEEEecCccccccccCCCceeeEecCCceEEEEccccHH
Confidence 87775 467789999999999999999999999999999 999999876544 258899999999999999999
Q ss_pred HHHHHhhhhcCcccccccccceEEEcCCCCcccCCCcceEEEecCCCCeEEEecccCCCccccccCccCCCCC--CChhH
Q psy16512 687 AQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNT--DVPLG 764 (815)
Q Consensus 687 ~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd~~tg~~~--~~~l~ 764 (815)
+|+++++. .++|+|||||||++|. ++|+||.|+.|+|| ++.|.+++||.||++||+||+||++. .+|++
T Consensus 155 dL~~r~~~----~~~merFRpNlvv~ge-~a~aEd~w~~i~IG----~v~F~~vkPC~RCi~Ttvd~~tGe~~p~~~p~~ 225 (270)
T COG3217 155 DLRRRVPA----NLEMERFRPNLVVEGE-DAFAEDSWKSIRIG----GVRFDVVKPCSRCIFTTVDPDTGERRPGGEPLF 225 (270)
T ss_pred HHhhhccC----CCChhhCCCceEEeec-ccccccCceEEEEc----cEEEEEeccchhcceeeECCcccccCCCCChhH
Confidence 99999765 5679999999999999 99999999999999 99999999999999999999999974 59999
Q ss_pred HHHhccccccccCcccccccccccccceeeeeeeec
Q psy16512 765 EYQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMIL 800 (815)
Q Consensus 765 ~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (815)
+|+++|+... .+++.||++...-+++.+-+++..
T Consensus 226 ~~~~~R~~~d--~~~~~FG~n~~a~~~g~ir~Gd~v 259 (270)
T COG3217 226 TLNRFRTNPD--AGGVLFGQNLIARNEGRIRVGDAV 259 (270)
T ss_pred HHHhhhcccc--cCcccccceEEeccCcceecCcce
Confidence 9999999644 678999999887777767666543
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=424.38 Aligned_cols=371 Identities=25% Similarity=0.355 Sum_probs=320.3
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIK 138 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~ 138 (815)
..+|||++++++.|..+++++.+++. ..+.|+++. +.....+...++++|+.+++++|+++ ++ |+||+|+|+|++
T Consensus 22 ~~vylD~aa~~~~p~~V~~a~~~~~~-~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~e--Ivft~~tT~aln 98 (405)
T COG0520 22 PLVYLDNAATSQKPQAVLDAVAEYYR-RYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDE--IVFTRGTTEALN 98 (405)
T ss_pred CeEEecCcccccCCHHHHHHHHHHHH-hhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCe--EEEeCChhHHHH
Confidence 46899999999999999999987664 456788866 45555556669999999999999996 65 999999999999
Q ss_pred HHHhhhc--cCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 139 TVSEYFE--FNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 139 ~~~~al~--~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+++.++. +.+|| ||++..+|++.. .|...+++.| ++++++++.++.+.++.. ++++|++|+++++
T Consensus 99 ~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~-------i~~~Tklvais~v 171 (405)
T COG0520 99 LVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKL-------ITPKTKLVALSHV 171 (405)
T ss_pred HHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHh-------cCCCceEEEEECc
Confidence 9999996 58889 999999999855 5888888777 778887778888887763 4688999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|.||.+.|+++|.++|| ++|++++||++|++|+.++|+.++++||+++|.|||+++|+|+|+|+++++
T Consensus 172 Sn~tG~~~pv~~I~~la~-----------~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~ 240 (405)
T COG0520 172 SNVTGTVNPVKEIAELAH-----------EHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKE 240 (405)
T ss_pred cccccccchHHHHHHHHH-----------HcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchH
Confidence 999999999999999999 899999999999999999999999999999999997777999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHh
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~ 368 (815)
+++.+.|...||++...+...... .+...+.+|+.||+|+.+.+++.++++++.+++... +|.+.|++++.+.|++
T Consensus 241 ~l~~l~P~~~gg~~~~~~~~~~~~--~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~ 318 (405)
T COG0520 241 LLEELEPFLGGGGMIEYVSRDEGV--TLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE 318 (405)
T ss_pred HHhhcCCcccCCCceeeecccccc--cccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888766553322 235567899999999999999999999999998543 9999999999999999
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ |+++++++.. ..+.++++|++.+... .++...|.++||.+|.|++|..+... .+++
T Consensus 319 ~------~~v~i~g~~~----~~r~~~vsF~v~~~~~-----~dv~~~L~~~gI~vr~g~~ca~p~~~-~~~~------- 375 (405)
T COG0520 319 L------PGVEIYGPPD----ADRGGIVSFNVKGIHP-----HDVATLLDEKGIAVRAGHHCAQPLHR-LLGV------- 375 (405)
T ss_pred C------CCeEEecCCc----ccCceEEEEEeCCCCH-----HHHHHHHHhCCeEEEeccccccHHHH-hcCC-------
Confidence 9 8999998762 3468999999987643 46999999999999999999987643 3443
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.+|+|+++|||+||||+|+++|+++..
T Consensus 376 -------------------~~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 376 -------------------DATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred -------------------CCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 24599999999999999999999998753
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=394.46 Aligned_cols=360 Identities=22% Similarity=0.301 Sum_probs=312.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++||||++++++.+.++++|...+... |+||+|.+.....+...++++|+.+|+++|+++.+ |+||+|+|+++++++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~e--IiFTSG~TEsnNlaI 78 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGADPEE--IIFTSGATESNNLAI 78 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhh-cCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCe--EEEecCCcHHHHHHH
Confidence 589999999999999999999877654 99999997777667777999999999999999976 999999999999999
Q ss_pred hhh--cc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 142 EYF--EF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 142 ~al--~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
.+. .. +.|. +|++..+|++++...+.++..| +++++.++.++++.++++| +++|.||.+.++|
T Consensus 79 ~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al-------~~~T~LVSim~aN 151 (386)
T COG1104 79 KGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEAL-------RPDTILVSIMHAN 151 (386)
T ss_pred HhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhc-------CCCceEEEEEecc
Confidence 883 32 1344 9999999999999877776666 8899999999999998855 4889999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|.+|++.|+++|.++|+ ++++++|+|++|++|..|+|+..+++|++.+|.||+.| |.|+|+||+++..
T Consensus 152 nE~G~IQpI~ei~~i~k-----------~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~G-pkGiGaLyv~~~~ 219 (386)
T COG1104 152 NETGTIQPIAEIGEICK-----------ERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGG-PKGIGALYVRPGV 219 (386)
T ss_pred cCeeecccHHHHHHHHH-----------HcCCeEEEehhhhcCceeccccccCcceEEeehhhccC-CCceEEEEECCCC
Confidence 99999999999999999 89999999999999999999999999999999999999 9999999998776
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHhcc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~~~~~~l~~~l~~~L~~l~ 370 (815)
. +.|.+.||++ ++.+++||.|+++++++..|++....... ...+...++++|.+.|.+..
T Consensus 220 ~--~~p~i~GGgQ-----------------E~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~ 280 (386)
T COG1104 220 R--LEPLIHGGGQ-----------------ERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEII 280 (386)
T ss_pred c--cCceeccCcC-----------------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 7788888887 45789999999999999999987664433 34999999999999998652
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhh-----hhcCCCHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ-----RFLGLSDIT 445 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~-----~~~g~~~~~ 445 (815)
|.+.+.+... .+.+++++|.+++.+++. +...|+.+||.+++|+.|+.+..+ ..||++++
T Consensus 281 -----p~~~~~g~~~----~rlP~~~~~~f~gv~gE~-----ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e- 345 (386)
T COG1104 281 -----PDVYLNGDDE----PRLPNILNFSFPGVEGES-----LLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEE- 345 (386)
T ss_pred -----CcEEEcCCcc----cCCCCeEEEEeCCCcHHH-----HHHhccccCeEEeccccccCCCCCccHHHHHcCCChH-
Confidence 6788877642 567899999999988876 788899999999999999977543 34555443
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+.||||++.+||++|+++++++|.+++..
T Consensus 346 --------------------~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~ 377 (386)
T COG1104 346 --------------------LAHGSIRFSLGRFTTEEEIDAAAEALKEIIKR 377 (386)
T ss_pred --------------------HhCccEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 23589999999999999999999999998654
|
|
| >KOG2362|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=378.39 Aligned_cols=254 Identities=22% Similarity=0.372 Sum_probs=213.7
Q ss_pred CccEEeeeeeccccccCceeeccEEEEEecC----CCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCC
Q psy16512 531 KENKLVSIYIYPVKACGFFKVESKWEVTASG----LKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKS 606 (815)
Q Consensus 531 ~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~G----l~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~ 606 (815)
.+++|++|++||||||+|.+|. +..+|..| ..+||.|++++++|+++|+|..|.|++|+... -.+.+.+..++
T Consensus 41 ~vg~v~slhiyPiKSC~~~~v~-q~~ct~~g~~~e~~~DR~~lvVn~kg~~iTaRv~P~l~~ies~~--~~~~~~v~~~~ 117 (336)
T KOG2362|consen 41 PVGRVKSLHIYPIKSCKGIDVF-QYKCTPLGPSMEFLWDRTFLVVNEKGKFITARVKPKLVLIESEM--PDGAFLVDWPG 117 (336)
T ss_pred EeeeeeeeEEEEeccccccchh-HhhcCCCCcchhheeeceEEEEeccceEEEeeccceEEEeeccc--ccceeEEecCC
Confidence 6799999999999999999999 99999988 77899999999999999999999999999888 67777888887
Q ss_pred CCeeEEEecCC---CCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCC---------eEEEEecCCCC---------C
Q psy16512 607 SGSTVEIGIDN---EGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKG---------LRLIRISKRSS---------K 665 (815)
Q Consensus 607 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~---------~~L~~~~~~~~---------~ 665 (815)
.+ ...+++.. ..........|+...++++||+..+.|||++...++ +++.+.-.... +
T Consensus 118 ~~-~~s~~~~~~l~~~~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~e~~~~~~~~~~~~~~~er~~~~~~~~~~~p~~~~ 196 (336)
T KOG2362|consen 118 PE-KDSVLVFRVLGNKRLKVATLFPDLSADGYDCGDWVASAFSEGIEEPNWRLIFVGKGLYTERTNKPDETWWNNPVPKR 196 (336)
T ss_pred Cc-chhhhhhhhccCCccccccccccceeeccccHhhhhhhHHhhhhccchhhhhhcCcceeeecccCCccccCCCccCc
Confidence 65 44443332 222334566788889999999999999998876653 55555432221 1
Q ss_pred CcccccccccceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCcceEEEecCCCCeEEEecccCCC
Q psy16512 666 RNINSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTR 745 (815)
Q Consensus 666 ~~~~~f~d~~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w~~i~Ig~~~~~~~~~~~~~~~R 745 (815)
.+.++|+|.+|++|+|++||++||.+|++ +++++||||||+|||+ .||+||.|.+|+|| +++|+.++||+|
T Consensus 197 ~d~~~f~D~~Pfli~s~aSL~dLNt~L~~----~V~~~~FRpnI~vdgc-~~~~ED~W~ei~Ig----d~~~~~v~~CtR 267 (336)
T KOG2362|consen 197 GDSTTFSDLAPFLIASQASLDDLNTRLDK----PVPMNNFRPNIVVDGC-DAFAEDKWDEIRIG----DAEFQCVAPCTR 267 (336)
T ss_pred cccccccccchhhhhchhhHHHHHhhhcC----CccHhhcccceEEecC-ccccccccceEEEc----cEEEEEEeeccc
Confidence 37899999999999999999999999865 6779999999999999 99999999999999 999999999999
Q ss_pred ccccccCccCCCCCC-ChhHHHHhccccccc----cCcccccccccccccceeeeee
Q psy16512 746 CQYIYIDQETALNTD-VPLGEYQTRNFSTVS----LNVKEFFNNLEKTYNQYNFCSS 797 (815)
Q Consensus 746 C~~~~vd~~tg~~~~-~~l~~l~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 797 (815)
|++|||||+||+++. ||+++|++||-+.++ ..+..+||++...++.+-+.++
T Consensus 268 CiltTV~petG~~~k~qpletLr~fR~~~~~~~~~~~~sp~fGv~~~~~~~g~I~vG 324 (336)
T KOG2362|consen 268 CILTTVDPETGEMSKMQPLETLREFRLDPGKPRKVHMGSPLFGVYAGLVNEGTIKVG 324 (336)
T ss_pred eeeeeeccccccccccCchhhHHhhhcCCcccccccCCCcccceeecccccceEEeC
Confidence 999999999999997 999999999976532 4566789988888775545543
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=371.39 Aligned_cols=367 Identities=20% Similarity=0.271 Sum_probs=290.5
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~ 138 (815)
..+|||+++.+++++.+++++.+.+.. .+.|+++. +.........++++|+.+++++|+ ++++ |+||+|+|++++
T Consensus 23 ~~iYld~a~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~--v~~t~g~t~~l~ 99 (406)
T PRK09295 23 PLAYLDSAASAQKPSQVIDAEAEFYRH-GYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEE--LVFVRGTTEGIN 99 (406)
T ss_pred ceEEEeCcccccCCHHHHHHHHHHHHh-cCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCe--EEEeCCHHHHHH
Confidence 369999999999999999998877653 34566442 332333444589999999999998 4555 999999999999
Q ss_pred HHHhhh---ccCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 139 TVSEYF---EFNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 139 ~~~~al---~~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++.++ .+++|| ||++..+|++.. .|...++..| .++++.++..+.+.+++++ +++|++|++++
T Consensus 100 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i-------~~~t~lv~l~~ 172 (406)
T PRK09295 100 LVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALF-------DERTRLLAITH 172 (406)
T ss_pred HHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhc-------CCCcEEEEEec
Confidence 999885 347888 899999998754 4666666666 5566655556666666533 46799999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++|+||.++|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||++| |.|+|++++++
T Consensus 173 ~~n~tG~~~~~~~i~~~~~-----------~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~ 240 (406)
T PRK09295 173 VSNVLGTENPLAEMIALAH-----------QHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKE 240 (406)
T ss_pred chhcccccCCHHHHHHHHH-----------HcCCEEEEEcccccCccccCchhcCCCEEEeehhhccC-CCCcEEEEEch
Confidence 9999999999999999999 89999999999999999999988899999999999888 99999999999
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~ 367 (815)
++++.+.+...+++.......... ..+...+.+|+.||+|+.+++++.++++++.+++... ++.+++++++.+.|+
T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~ 318 (406)
T PRK09295 241 ALLQEMPPWEGGGSMIATVSLTEG--TTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLE 318 (406)
T ss_pred HhHhhCCCcccCCceeeeeecCCc--cccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 988777654433333222211111 1123456789999999999999999999998876543 899999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ ++++++++. .+.++++|.+++... .++.+.|.++||.+++|++|..+... .+|
T Consensus 319 ~~------~~~~~~~~~------~~~~iv~~~~~~~~~-----~~~~~~L~~~gI~v~~g~~c~~~~~~-~~~------- 373 (406)
T PRK09295 319 SV------PDLTLYGPQ------NRLGVIAFNLGKHHA-----YDVGSFLDNYGIAVRTGHHCAMPLMA-YYN------- 373 (406)
T ss_pred cC------CCEEEeCCC------CCceEEEEEECCcCH-----HHHHHHHHhCCeEEeccccchHHHHH-HHC-------
Confidence 88 789998763 236899999875433 35788899999999999999865432 122
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
. .+++|+|+++|||++|||+|+++|+++.
T Consensus 374 ------------------~-~~~iRiS~~~ynt~~did~l~~~l~~i~ 402 (406)
T PRK09295 374 ------------------V-PAMCRASLAMYNTHEEVDRLVAGLQRIH 402 (406)
T ss_pred ------------------C-CCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 1 3689999999999999999999999863
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=364.11 Aligned_cols=373 Identities=21% Similarity=0.273 Sum_probs=291.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIK 138 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~ 138 (815)
..+|||+++.+++|+.+.+++.+.+.+ ...++++. +.........++++|+.+++++|+++ ++ |+||+|+|++++
T Consensus 32 ~~iyLd~a~~~~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~--v~~t~g~t~al~ 108 (424)
T PLN02855 32 KLVYLDNAATSQKPAAVLDALQDYYEE-YNSNVHRGIHALSAKATDAYELARKKVAAFINASTSRE--IVFTRNATEAIN 108 (424)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHh-cCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCE--EEEeCCHHHHHH
Confidence 369999999999999999998776643 34565542 22222223348899999999999963 44 999999999999
Q ss_pred HHHhhh---ccCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 139 TVSEYF---EFNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 139 ~~~~al---~~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++.++ .+++|+ |+++..+|++.+ .|..+++..| .++++.++.++++.+++++ +++|++|++++
T Consensus 109 ~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i-------~~~t~lv~i~~ 181 (424)
T PLN02855 109 LVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELL-------SEKTKLVATHH 181 (424)
T ss_pred HHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHh-------ccCceEEEEeC
Confidence 999875 247888 888899999865 4666666666 5566655556666666543 46899999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++|+||.++|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||++| |.|+|++++++
T Consensus 182 ~~n~tG~~~~~~~I~~l~~-----------~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~ 249 (424)
T PLN02855 182 VSNVLGSILPVEDIVHWAH-----------AVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCG-PTGIGFLWGKS 249 (424)
T ss_pred ccccccccCCHHHHHHHHH-----------HcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccC-CCccEEEEEch
Confidence 9999999999999999999 89999999999999999999988899999999999877 99999999999
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~ 367 (815)
+.++.+.+...|++....... .+. .+...+.+|+.||+++.+++++.++++++.+++... +|..++++++++.|+
T Consensus 250 ~~~~~~~p~~~g~~~~~~~~~--~~~-~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~ 326 (424)
T PLN02855 250 DLLESMPPFLGGGEMISDVFL--DHS-TYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLS 326 (424)
T ss_pred hhhhcCCCEecCCCceeeeec--Ccc-ccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 998888766544443322111 111 122345789999999999999999999998876544 899999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ ++++++++... ....++++++|.+++.+. .++.+.|.++ ||.++.|++|+++.. ..+|+
T Consensus 327 ~~------~g~~i~~~~~~-~~~~r~~~v~~~~~~~~~-----~~v~~~L~~~~gI~v~~g~~c~~~~~-~~~g~----- 388 (424)
T PLN02855 327 SV------PGVRIYGPKPS-EGVGRAALCAFNVEGIHP-----TDLSTFLDQQHGVAIRSGHHCAQPLH-RYLGV----- 388 (424)
T ss_pred cC------CCEEEeCCCcc-cccCcccEEEEEECCcCH-----HHHHHHhcccCCEEEechhhhhHHHH-HHhCC-----
Confidence 88 78999976420 012347899999875433 3578888766 999999999986543 33443
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++||+|+++|||++||++++++|++++..
T Consensus 389 ---------------------~~~iRiS~~~ynt~~di~~l~~~l~~~~~~ 418 (424)
T PLN02855 389 ---------------------NASARASLYFYNTKEEVDAFIHALKDTIAF 418 (424)
T ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999998754
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=357.73 Aligned_cols=372 Identities=19% Similarity=0.256 Sum_probs=292.5
Q ss_pred cccccc-hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecC
Q psy16512 55 GKNHLK-DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTS 131 (815)
Q Consensus 55 d~~~~~-~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~ 131 (815)
+|+..+ +.+|||+++.+++++.+.+++.+.+.+ .++|+++. +.....+...++++|+.+++++|+ ++++ |++|+
T Consensus 12 ~fp~l~~~~~yld~a~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~--i~~~~ 88 (401)
T PRK10874 12 QFPALQDAGVYLDSAATALKPQAVIEATQQFYSL-SAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKN--IVWTR 88 (401)
T ss_pred hCCCcCCceEEEeCCcccCCCHHHHHHHHHHHHh-ccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCE--EEEEC
Confidence 445333 479999999999999999999877654 45676653 333333445589999999999999 5665 99999
Q ss_pred CchhhHHHHHhhhc---cCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCc
Q psy16512 132 GATSAIKTVSEYFE---FNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 132 g~t~al~~~~~al~---~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
|+|+++++++.++. +++|| ||++..+|++.+ .|...++..| .++++.++.++++.++++ ++++|
T Consensus 89 ~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~-------i~~~t 161 (401)
T PRK10874 89 GTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPEL-------ITPRT 161 (401)
T ss_pred CHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHh-------cCcCc
Confidence 99999999999983 47888 999999999854 5666667667 455655555666666653 35789
Q ss_pred cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcc
Q psy16512 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGL 282 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~ 282 (815)
++|++++++|+||.+.|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||+|| |.|+
T Consensus 162 ~lv~i~~~~n~tG~~~~~~~i~~l~~-----------~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~G~ 229 (401)
T PRK10874 162 RILALGQMSNVTGGCPDLARAITLAH-----------QAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYG-PTGI 229 (401)
T ss_pred EEEEEeCCcccccCcCCHHHHHHHHH-----------HcCCEEEEECCcccccccCCchhcCCCEEEEecccccC-CCcc
Confidence 99999999999999999999999999 89999999999999998889888899999999999888 9999
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQ 360 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~ 360 (815)
|+++++++.++.+.+...++..... ..+..+. ....+.+|+.||+|+.+++++.++++++...+... ++..++++
T Consensus 230 G~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~ 306 (401)
T PRK10874 230 GVLYGKSELLEAMSPWQGGGKMLTE-VSFDGFT--PQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLAT 306 (401)
T ss_pred EEEEEchHHHhcCCCeecCCcceEe-eccCccC--CCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 9999999988877665433322111 1111111 12345789999999999999999999988776543 88889999
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
++.+.|+++ |+++++.+.. +++++|.+++.+ ..++.+.|.++||.+++|+.|..+... .+|
T Consensus 307 ~l~~~l~~~------~g~~~~~~~~-------~~i~~~~~~~~~-----~~~~~~~L~~~gI~v~~g~~~~~~~~~-~~g 367 (401)
T PRK10874 307 LAEDALAKL------PGFRSFRCQD-------SSLLAFDFAGVH-----HSDLVTLLAEYGIALRAGQHCAQPLLA-ALG 367 (401)
T ss_pred HHHHHHhcC------CCEEEeCCCC-------CcEEEEEECCcC-----HHHHHHHHHHCCcEEeccccchHHHHH-HhC
Confidence 999999988 7888876432 578888876433 235788889999999999988754332 122
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
. .++||+|++.|||++||++++++|++++.
T Consensus 368 ~--------------------------~~~iRiS~~~~nt~edid~ll~al~~~~~ 397 (401)
T PRK10874 368 V--------------------------TGTLRASFAPYNTQSDVDALVNAVDRALE 397 (401)
T ss_pred C--------------------------CCEEEEEecccCCHHHHHHHHHHHHHHHH
Confidence 1 37899999999999999999999998754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=357.88 Aligned_cols=372 Identities=19% Similarity=0.268 Sum_probs=290.6
Q ss_pred cccccc-hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecC
Q psy16512 55 GKNHLK-DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTS 131 (815)
Q Consensus 55 d~~~~~-~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~ 131 (815)
+|+..+ +.+|||+++.+++|+.+.+++.+.+.. ..+|+++. +.........++++|+.+++++|++ +++ |++|+
T Consensus 9 ~fp~l~~~~iyld~a~~~~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~--i~~t~ 85 (398)
T TIGR03392 9 QFPALQDGTVYLDSAATALKPQAVIDATQQFYRL-SSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAEN--IVWTR 85 (398)
T ss_pred hCCccCCCeEEeeCccccCCCHHHHHHHHHHHHh-cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCe--EEEeC
Confidence 445333 479999999999999999998876643 35666543 2222233344889999999999995 555 99999
Q ss_pred CchhhHHHHHhhhc---cCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCc
Q psy16512 132 GATSAIKTVSEYFE---FNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 132 g~t~al~~~~~al~---~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
|+|+++++++.++. +++|| ||++..+|++.+ .+...++..| .++++.++..+++.+++++ .++|
T Consensus 86 g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i-------~~~t 158 (398)
T TIGR03392 86 GTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELL-------TPRT 158 (398)
T ss_pred ChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHh-------ccCc
Confidence 99999999999983 47888 899999999854 4666666666 5556555456666666533 4789
Q ss_pred cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcc
Q psy16512 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGL 282 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~ 282 (815)
++|++++++|+||.+.|+++|.++|+ ++|+++++|++|+.+..++++..+++|++++|+||++| |.|+
T Consensus 159 ~lv~i~~~~n~tG~~~~~~~i~~~~~-----------~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-p~G~ 226 (398)
T TIGR03392 159 RILALGQMSNVTGGCPDLARAITLAH-----------QYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYG-PTGI 226 (398)
T ss_pred eEEEEECccccccccCCHHHHHHHHH-----------HcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccC-CCce
Confidence 99999999999999999999999999 89999999999999988888888899999999999888 9899
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQ 360 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~ 360 (815)
|+++++++.++.+.+.. +++.......+.. ......+.+|+.||+|+.+++++.++++++...+... ++..++++
T Consensus 227 G~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~ 303 (398)
T TIGR03392 227 GVLYGKTELLEAMPPWQ-GGGKMLSHVSFDG--FIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLAD 303 (398)
T ss_pred EEEEEcHHHHhhCCCee-cCCceEeeccccc--cccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 99999999888776644 4433211111111 1123456789999999999999999999988765433 88899999
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
++.+.|+++ ++++++.+.. +++++|.+++.+. .++.+.|.++||.++.|+.|+..... .+|
T Consensus 304 ~l~~~l~~l------~g~~~~~~~~-------~~i~~~~~~~~~~-----~~l~~~L~~~gI~v~~g~~~~~~~~~-~~g 364 (398)
T TIGR03392 304 LAEERLAQL------PGFRSFRCPG-------SSLLAFDFAGVHH-----SDLAALLAESGIALRAGQHCAQPLMA-ALG 364 (398)
T ss_pred HHHHHHhcC------CCeEEeCCCC-------CcEEEEEeCCcCH-----HHHHHHHHhCCEEEecCccchHHHHH-HhC
Confidence 999999988 7888875432 5788988765332 35888899999999999998854332 222
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
. .++||||+++|||++||++++++|++++.
T Consensus 365 ~--------------------------~~~iRvS~~~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 365 V--------------------------SGTLRASFAPYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred C--------------------------CCEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 1 37899999999999999999999998764
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=340.12 Aligned_cols=368 Identities=23% Similarity=0.298 Sum_probs=291.5
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
..+|+|+.++++.++.|++++.+++. ..++|||+....+ .+..+++++|+.+|+++|+++.+ |+||+|+|++++++
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~-~~~~nPh~~~y~w-~~~~~~E~aR~~VAklInAd~~d--IiFts~ATEs~Nlv 118 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLL-EYLGNPHSRSYGW-KAEDAVEAAREQVAKLINADPSD--IVFTSGATESNNLV 118 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHH-HhhcCCCccccch-hhhHHHHHHHHHHHHHhCCCCCc--EEEeCCchHHHHHH
Confidence 57999999999999999999987654 5789999881111 12344899999999999999998 99999999999999
Q ss_pred HhhhccCCCc-----EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 141 SEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 141 ~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++++.|..++ ||+...+|+++..+...++..| ++|++.++..+++.+++.| +++|++|.+.+++
T Consensus 119 l~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i-------~~~T~lv~I~~Vn 191 (428)
T KOG1549|consen 119 LKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAI-------RSKTRLVSIMHVN 191 (428)
T ss_pred HHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhc-------CCCceEEEEEecc
Confidence 9999874443 8888999999999888888888 7788877788888887744 5899999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|.+|+++|+++|.++|+ ++++.+++|+||++|..++|+.++++|+++.|.||||| |+|+|+||+++..
T Consensus 192 n~~gv~~Pv~EI~~icr-----------~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~yg-p~~iGaLYvr~~~ 259 (428)
T KOG1549|consen 192 NEIGVLQPVKEIVKICR-----------EEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYG-PPGIGALYVRRKR 259 (428)
T ss_pred cCccccccHHHHHHHhC-----------cCCcEEEeehhhhcCCccccHHHcCchheeeecccccC-CCcceEEEEccCC
Confidence 99999999999999999 89999999999999999999999999999999999999 8889999999722
Q ss_pred -ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-
Q psy16512 292 -AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ- 368 (815)
Q Consensus 292 -~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~- 368 (815)
.-.+.|.+.||+. .+.++.||.+.+...++..|.++..+..... .+..++...+...+..
T Consensus 260 ~~~~~~p~~~GGgq-----------------~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~ 322 (428)
T KOG1549|consen 260 PRLRVEPPLSGGGQ-----------------ERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQS 322 (428)
T ss_pred CcccccCcccCCcc-----------------ccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhh
Confidence 1134477777776 3469999999999999999999988765444 6666677777766644
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
. +.+.+.++.. ....+.++|.++...+.. -.+...-+.+++|..|.....+ +..++.
T Consensus 323 ~------~~~~~~G~~~----~~~~~~~~~~~~~~~g~~-------~~~~~~~~~l~s~~a~~~~~~e------psy~l~ 379 (428)
T KOG1549|consen 323 L------PEVTLNGSGK----SRYPGLVSLSFPYVEGES-------LLMDLKDVALSSGSACTSASLE------PSYVLR 379 (428)
T ss_pred C------chhhccCCcc----cccccceeeecccccCcc-------hhhhhhhhhhcccchhhcCCCC------cchhhh
Confidence 4 4556666543 456888889888555543 2345556778888777543221 111111
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
+ +|.+. .....+||||+|.|++++|++++++.+.+.+....++
T Consensus 380 ~------~G~~~----~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~ 422 (428)
T KOG1549|consen 380 A------IGVDE----DLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREM 422 (428)
T ss_pred h------cCcch----hhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhcccc
Confidence 1 22222 3446899999999999999999999999987665544
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=350.23 Aligned_cols=348 Identities=21% Similarity=0.262 Sum_probs=276.7
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCC-hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG-NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s-~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
+|||+++.+++++.+.+++.+.+. ..++||++ .+.........++++|+.+++++|+++++ |+||+|+|+++++++
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--v~~t~~~t~a~~~~l 77 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLI-EHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKE--IIFTSGATESNNLAI 77 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHH-hCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCCHHHHHHHHH
Confidence 599999999999999999987664 34678876 22222223344899999999999998876 999999999988887
Q ss_pred hhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++. .++|+ ++++..+|+++......+...| .++++.++.++++.+++++ +++++++++++++|+
T Consensus 78 ~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i-------~~~t~lv~v~~~~n~ 150 (364)
T PLN02651 78 KGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAI-------RPDTALVSVMAVNNE 150 (364)
T ss_pred HHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhc-------CCCcEEEEEECCCCC
Confidence 6652 26788 8888999999766444444555 4566655666777776644 467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|.++|+ ++|+++++|++|++|..++|++.+++|++++|+|||+| |.|+|+++++++..+
T Consensus 151 tG~~~~l~~I~~~~~-----------~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~g-p~G~g~l~v~~~~~~ 218 (364)
T PLN02651 151 IGVIQPVEEIGELCR-----------EKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYG-PKGVGALYVRRRPRV 218 (364)
T ss_pred ceecccHHHHHHHHH-----------HcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCC-CCceEEEEEcCCCCC
Confidence 999999999999999 89999999999999999999999999999999999865 999999999999888
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-ccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ-LSY 371 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~-l~~ 371 (815)
.+.+.+.|++. ..+++.||+|+.+++++.++++++......+ +|..++++++.+.|++ +
T Consensus 219 ~l~p~~~g~~~-----------------~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~-- 279 (364)
T PLN02651 219 RLEPLMSGGGQ-----------------ERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKL-- 279 (364)
T ss_pred CCCccccCCCc-----------------cCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 88777766543 1357799999999999999999998765444 9999999999999975 5
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhhhcCCCHHHH
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQRFLGLSDITI 446 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~~~g~~~~~~ 446 (815)
|+++++++... ..+.+++++|.+++.+++ ++.+.|.+ |.++.|++|.++. ....+|.++.
T Consensus 280 ----~~~~i~~~~~~--~~~~~~i~~~~~~~~~~~-----~~~~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~-- 344 (364)
T PLN02651 280 ----GGVRVNGPRDP--EKRYPGTLNLSFAYVEGE-----SLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVPEE-- 344 (364)
T ss_pred ----CCEEEECCCCc--ccCcCCEEEEEeCCCCHH-----HHHHHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChH--
Confidence 68999986421 123477999998754433 47777765 9999999998764 2233443321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.||+|+++|||++|||
T Consensus 345 -------------------~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 345 -------------------MAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred -------------------HhCceEEEEcCCCCCHHHcC
Confidence 11489999999999999985
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=350.12 Aligned_cols=358 Identities=21% Similarity=0.296 Sum_probs=283.9
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
+|||+++.+++++.+.+++.+.+.. .++||++.+.........++++|+.+++++|+++++ |+||+|+|+++++++.
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--i~~t~~~t~a~~~al~ 77 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTE-YFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDE--IIFTSGGTESDNTAIK 77 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHh-cCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCcHHHHHHHHHH
Confidence 5999999999999999999887764 567887654333333444899999999999998876 9999999999999988
Q ss_pred hhcc--CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 143 YFEF--NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 143 al~~--~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
++.. .+|+ +|++..+|+++......+...| .++++.++.++.+.+++++ +++++++++++++|+||
T Consensus 78 ~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i-------~~~~~lv~i~~~~n~tG 150 (379)
T TIGR03402 78 SALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAI-------TDDTALVSVMWANNETG 150 (379)
T ss_pred HHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhc-------CCCcEEEEEEcccCCee
Confidence 7631 3456 8888899999877655555566 4555555567777776643 46799999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccccc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l 295 (815)
.++|+++|.++|+ ++|+++++|++|++|..++|+..+++|++++|+||++| |.|+|+++++++.. +
T Consensus 151 ~~~~~~~I~~l~~-----------~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~g-p~G~g~l~v~~~~~--~ 216 (379)
T TIGR03402 151 TIFPIEEIGEIAK-----------ERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHG-PKGVGALYIRKGTR--F 216 (379)
T ss_pred ecccHHHHHHHHH-----------HcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCC-CCceEEEEECCCCC--C
Confidence 9999999999999 89999999999999999999999999999999999766 99999999998752 5
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-ccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ-LSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~-l~~~~ 373 (815)
.|.+.++.. ..+++.||+|+.+++++.++++++....... ++.+++++++.+.|++ +
T Consensus 217 ~p~~~g~~~-----------------~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~---- 275 (379)
T TIGR03402 217 RPLLRGGHQ-----------------ERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARI---- 275 (379)
T ss_pred CCcccCCcc-----------------CCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhC----
Confidence 555544322 1245689999999999999999987654444 8999999999999985 7
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhh-----hhcCCCHHHHHH
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ-----RFLGLSDITIKF 448 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~-----~~~g~~~~~~~~ 448 (815)
++++++++.. .+.+++++|.+...++ .++...|.++||.++.|++|+++... ..+|....
T Consensus 276 --~~~~~~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~l~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~---- 340 (379)
T TIGR03402 276 --PDARLNGDPT----KRLPNTVNISFEYIEG-----EAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHT---- 340 (379)
T ss_pred --CCEEEeCCCc----cCCCCEEEEEecCCCH-----HHHHHhhccCCEEEEchhhcCCCCCCcCHHHHHcCCChh----
Confidence 7888887542 2335688888765443 35888889999999999999876432 23333211
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+.||+|+|+|||++||++++++|++++..
T Consensus 341 -----------------~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~ 372 (379)
T TIGR03402 341 -----------------AAHGSIRFSLSRYNTEEDIDYVLEVLPPIIAR 372 (379)
T ss_pred -----------------hcCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 12478999999999999999999999987643
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=353.93 Aligned_cols=360 Identities=24% Similarity=0.352 Sum_probs=283.6
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
+|||+++.+++|+.+++++.+.+.. .+.||++. +.......+.++++|+.+++++|++++ ++|+|++|+|.++++++
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~-~~v~~~~~~t~a~~~~~ 78 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRN-FYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD-EEVVFTSNGTEALNAVA 78 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHH-SGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT-EEEEEESSHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHH-hhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc-cccccccccchhhhhhh
Confidence 6999999999999999999876654 46677443 222233344499999999999999882 35999999999999999
Q ss_pred hhh--ccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYF--EFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al--~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++ .+++|+ ++++..+|++... |...+++.| .++.+.++..+++.++++| ++++++|++++++|.
T Consensus 79 ~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l-------~~~~~lv~~~~~~~~ 151 (371)
T PF00266_consen 79 SSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEAL-------NPDTRLVSISHVENS 151 (371)
T ss_dssp HHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHH-------HTTESEEEEESBETT
T ss_pred hccccccccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhh-------ccccceEEeeccccc
Confidence 999 238888 9999999999774 555565666 5666666677777777644 478999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.++|+++|.++|| ++|+++++|++|++|..++|++.+++|++++|+|| +++|+|+|+|+++++..+
T Consensus 152 tG~~~pi~~I~~~~~-----------~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~ 219 (371)
T PF00266_consen 152 TGVRNPIEEIAKLAH-----------EYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAIE 219 (371)
T ss_dssp TTBBSSHHHHHHHHH-----------HTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHHH
T ss_pred ccEEeeeceehhhhh-----------ccCCceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhhh
Confidence 999999999999999 78999999999999999999999999999999999 666999999999999999
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~ 371 (815)
+++|...+++....... ..+ .....+.+|+.||+++..++++..+++++.+.+... +|..++++++.+.|.++
T Consensus 220 ~~~p~~~~~~~~~~~~~-~~~--~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~-- 294 (371)
T PF00266_consen 220 RLRPAKPGGGYLDFPSL-QEY--GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEEL-- 294 (371)
T ss_dssp HHHTSSSSSSTTTHHHH-HHH--CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ccccccccccccccccc-hhc--ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcC--
Confidence 88877777653211000 000 123456788999999999999999999997776554 99999999999999999
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
++++++++.. ...++++++|.+.+.+. .++.+.|.++||.++.|+.|+.+.... +++
T Consensus 295 ----~~~~~~~~~~---~~~~~~i~~~~~~~~~~-----~~~~~~L~~~~I~~~~G~~~~~~~~~~-~~~---------- 351 (371)
T PF00266_consen 295 ----PGIEVLGPDD---EPRRPSIVSFNLPGSDA-----DDVVKYLEERGIAVSTGSACAGPSLDI-LGM---------- 351 (371)
T ss_dssp ----TTEEESSSSC---GGBGTTEEEEEETTSSH-----HHHHHHHHHHTEEEEESTTTCHHHHHH-HHT----------
T ss_pred ----CceeEeeecc---cccccceEEEeecCCCH-----HHHHHHHhhcCEEEeccCcccHHHHHH-hCC----------
Confidence 7999988543 46778999999965444 458899988899999999998443321 111
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
.++||||+++|||++|||+|
T Consensus 352 ----------------~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 352 ----------------GGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp ----------------TTEEEEE-GTTSSHHHHHHH
T ss_pred ----------------CCEEEEeccCCCCHHHHhhC
Confidence 28999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=344.16 Aligned_cols=363 Identities=17% Similarity=0.204 Sum_probs=281.1
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHHHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~~~~ 141 (815)
+|||+++++++++.+.+++.+.+. ..+.||++.+.........++++++.+++.+|+ ++++ |+||+|+|+++++++
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~-~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~--i~~t~g~teal~~~~ 77 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFC-DIYGNPNSLHQFGTATHPAIAEALDKLYKGINARDLDD--IIITSCATESNNWVL 77 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHH-hcCcCCccccHHHHHHHHHHHHHHHHHHHHcCcCCCCe--EEEeCCHHHHHHHHH
Confidence 599999999999999999877665 356788876433333445578888888888887 5665 999999999999999
Q ss_pred hhhcc----CC-Cc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 142 EYFEF----NE-GS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 142 ~al~~----~~-gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
.++.+ .+ ++ ++++..+||++......++..| .++++.++.++++.+++++ .++|++|++++++
T Consensus 78 ~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i-------~~~t~lv~~~~~~ 150 (382)
T TIGR03403 78 KGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAI-------TEKTALVSVMWAN 150 (382)
T ss_pred HHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhc-------ccCCeEEEEEccc
Confidence 98732 34 45 8888999999887766666666 5666665666666666533 4678999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
||||.++|+++|.++|+ ++|+++++|++++.|..++++..+++|++++|+|||+| |+|+|+++++++.
T Consensus 151 n~tG~~~~~~~I~~la~-----------~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~g-p~G~g~l~vr~~~ 218 (382)
T TIGR03403 151 NETGMIFPIKEIGEICK-----------ERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHG-PKGVGGLYIRKGV 218 (382)
T ss_pred CCCccccCHHHHHHHHH-----------HcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCC-CCceEEEEECCCC
Confidence 99999999999999999 89999999999999998899988899999999999988 9999999999875
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhcc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~ 370 (815)
.+.+.+.|++. ...++.||+|+.+++++.++++++...-.. .++.+++++++.+.|+++
T Consensus 219 --~~~p~~~g~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~- 278 (382)
T TIGR03403 219 --ELTPLFHGGEH-----------------MGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLEL- 278 (382)
T ss_pred --CCCCcccCCCC-----------------CCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-
Confidence 24454433322 123567999999999999999887653222 289999999999999988
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
++++++++.. .+.+++++|.+.+.++. .+.+.|.++||.++.|+.|+.... .+..++..+
T Consensus 279 -----~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~L~~~gI~v~~g~~c~~~~~------~~~~v~~~~ 338 (382)
T TIGR03403 279 -----PDVFVVGDRE----HRVPNTILISIKGVEGE-----AMLWDLNKAGIAASTGSACASEDL------EANPVMVAI 338 (382)
T ss_pred -----CCEEEECCCC----CCcCCEEEEEeCCCCHH-----HHHHhhccCCEEEEchhccCCCCC------CcCHHHHHc
Confidence 7899987642 23467888888654433 477778999999999999975432 222333332
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+.+ +....+.||+|++++||++|||+++++|++++..
T Consensus 339 g~~----------~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~ 375 (382)
T TIGR03403 339 GAD----------KELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQR 375 (382)
T ss_pred CCC----------hHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 110 0012478999999999999999999999987643
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=345.67 Aligned_cols=370 Identities=22% Similarity=0.309 Sum_probs=289.7
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCchhhHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGATSAIK 138 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~t~al~ 138 (815)
..+|||+++.+++|+.+.+++.+.+. ..++||++. +.........++++|+.+++++|++ +++ |++|+|+|++++
T Consensus 18 ~~~yld~~~~~~~p~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~--v~~~~g~t~~l~ 94 (403)
T TIGR01979 18 PLVYLDSAATSQKPQQVIDAVAEYYR-NSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEE--IVFTRGTTESIN 94 (403)
T ss_pred ceEEEeCccccCCCHHHHHHHHHHHH-hCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCe--EEEeCCHHHHHH
Confidence 46999999999999999998876554 345676642 2222222233889999999999998 455 999999999999
Q ss_pred HHHhhhc---cCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 139 TVSEYFE---FNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 139 ~~~~al~---~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++.++. +++|+ |+++..+|++.. .+...+...| .++++.++.++++.++++ ++++|++|++++
T Consensus 95 ~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~-------i~~~~~lv~~~~ 167 (403)
T TIGR01979 95 LVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKL-------LTEKTKLVAITH 167 (403)
T ss_pred HHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHH-------hccCCeEEEEEc
Confidence 9998862 37888 888899999855 4556665566 566665566676666653 346899999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++|+||.++|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||++| |.|+|++++++
T Consensus 168 ~~~~tG~~~~~~~i~~~~~-----------~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~G~g~l~~~~ 235 (403)
T TIGR01979 168 VSNVLGTVNPVEEIAKLAH-----------QVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYG-PTGIGVLYGKE 235 (403)
T ss_pred ccccccccCCHHHHHHHHH-----------HcCCEEEEEchhhcCccccCccccCCCEEEEecccccC-CCCceEEEEch
Confidence 9999999999999999999 89999999999999999999988899999999999988 99999999999
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~ 367 (815)
+.++.+.+...+++....... . ...+...+.+++.||+++..++++.++++++...+... ++..++++++.+.|+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~ 312 (403)
T TIGR01979 236 ELLEQMPPFLGGGEMIAEVSF-E--ETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLG 312 (403)
T ss_pred HHHhcCCCeecCCCceeeccc-C--ccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 888777766555544332111 0 01122345678899999999999999999988765433 999999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ ++++++.+.. ...++++++|.+++.+. .++.+.|.++||.++.|++|+.+.+. .+|
T Consensus 313 ~~------~g~~~~~~~~---~~~~~~~v~~~~~~~~~-----~~~~~~L~~~gI~v~~g~~~~~~~~~-~~~------- 370 (403)
T TIGR01979 313 EI------PGLRIYGPRD---AEDRGGIISFNVEGVHP-----HDVGTILDEEGIAVRSGHHCAQPLMR-RFG------- 370 (403)
T ss_pred cC------CCEEEeCCCC---ccccCceEEEEeCCcCH-----HHHHHHHhhCCEEEcchhhhhHHHHH-HhC-------
Confidence 88 7899987643 23457899998865432 35788999999999999988765432 122
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|||+++|||++|+++++++|++++.
T Consensus 371 -------------------~~~~iRiS~~~~~t~~di~~l~~~l~~~~~ 400 (403)
T TIGR01979 371 -------------------VPATCRASFYIYNTEEDIDALVEALKKVRK 400 (403)
T ss_pred -------------------CCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence 137899999999999999999999988653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=339.53 Aligned_cols=359 Identities=20% Similarity=0.290 Sum_probs=277.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+|||+++.+++++.+.+++.+.+.. .++||++. +.........++++|+.+++++|+++++ |+||+|+|++++++
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--v~~~~g~t~a~~~~ 80 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTE-KFGNPASRSHSFGWEAEEAVENARNQVAELIGADSRE--IVFTSGATESNNLA 80 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHh-cCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCCHHHHHHHH
Confidence 58999999999999999998776654 36677743 2222222334899999999999998876 99999999999998
Q ss_pred Hhhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 141 SEYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 141 ~~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+.++. .++|+ ++++..+|+++......++..| .++++.++.++++.+++++ .+++++|++++++|
T Consensus 81 l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l-------~~~~~lv~v~~~~n 153 (402)
T TIGR02006 81 IKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAI-------RDDTILVSIMHVNN 153 (402)
T ss_pred HHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhc-------CCCCEEEEEECCCc
Confidence 87763 25788 8888899999876555555556 5566666666777776543 46799999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
+||.+.|+++|.++|+ ++|+++++|++|++|..++++..+++|++++|+||++| |.|+|+++++++..
T Consensus 154 ~tG~~~~~~~I~~l~~-----------~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~g-p~G~G~l~~~~~~~ 221 (402)
T TIGR02006 154 EIGVIQDIAAIGEICR-----------ERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYG-PKGIGALYVRRKPR 221 (402)
T ss_pred CceecccHHHHHHHHH-----------HcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcC-CCceEEEEEccCCC
Confidence 9999999999999999 89999999999999999999998999999999999887 99999999998776
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
..+.+...+++. ..+++.||+++..++++.++++++......+ ++.+++++++.+.|+++
T Consensus 222 ~~~~~~~~g~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~-- 282 (402)
T TIGR02006 222 VRLEALIHGGGH-----------------ERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKSI-- 282 (402)
T ss_pred CCCCceecCCCc-----------------cCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC--
Confidence 666665544332 2367889999999999999999887543333 89999999999999988
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHH
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITI 446 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~ 446 (815)
++++++++.. .+.++++.+.+...++. .+...+ ++|.++.|++|++... ...+|++.+
T Consensus 283 ----~~v~~~~~~~----~~~p~~~~v~f~~~~~~-----~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~-- 345 (402)
T TIGR02006 283 ----EEVYLNGDLE----HRVPGNLNVSFNYVEGE-----SLIMAL--KDLAVSSGSACTSASLEPSYVLRALGINDE-- 345 (402)
T ss_pred ----CCEEEeCCcc----ccCCCeEEEEEeCcCHH-----HHHHhc--CCEEEechhhcCCCCCCccHHHHHcCCChh--
Confidence 6888876432 22234434444433322 344444 5999999999986532 233444322
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+.||+|++++||++|||+++++|++++..
T Consensus 346 -------------------~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~ 377 (402)
T TIGR02006 346 -------------------LAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDK 377 (402)
T ss_pred -------------------hcCceEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 12489999999999999999999999997654
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >KOG2142|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=342.52 Aligned_cols=636 Identities=25% Similarity=0.344 Sum_probs=447.1
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
..|+|+++.+...+..++..+.+.+.....|||+...........+++.|-++..+|+....+|.++||. .++|+..++
T Consensus 21 ~~yldhag~tl~sesq~~g~~~~sq~~e~~nphs~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~va 99 (728)
T KOG2142|consen 21 LAYLDHAGRTLFSESQLEGVAFQSQSSENANPHSHLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVA 99 (728)
T ss_pred HHHHHhhhhhhhhhcccchhhhhhhccccCCCcccccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHH
Confidence 4599999999999999998777777777788998855554434448888999999999999999999999 999999999
Q ss_pred hhhcc-CCCc-EE---EecCCCcchh--hHHHHhhccceEE-cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFEF-NEGS-FI---YLTDNHTSVL--GMRELVKTNQIYS-FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~~-~~gd-vv---~~~~~h~s~~--~~~~~~~~~g~v~-~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++++ +.+. +- -....|.+.. .+...-...|.+. +......+..... +.. ...--....++......|.
T Consensus 100 e~fp~~s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~s-ls~--~~~~ls~~~L~~g~a~~nf 176 (728)
T KOG2142|consen 100 EAFPFYSQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFS-LSE--SEANLSEHSLFGGAAQSNF 176 (728)
T ss_pred HhCccccccccccchhhhhhcccccccceeeeeeeccceEEeeeeeecccccccc-ccc--cccCcccchhcccchhccc
Confidence 99986 2222 11 1122333332 1222111123111 1222222221110 000 0001124678889999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
.|..+-...+-.+.- ..+.++++|++....+.++++..+.+|++.. |+|+||+|+ |.+.+..+.++
T Consensus 177 eg~kik~ri~d~L~i-----------pe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet--gAvlv~~r~A~ 242 (728)
T KOG2142|consen 177 EGDKIKLRIMDRLNI-----------PESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET--GAVLVMNRSAE 242 (728)
T ss_pred ccceeeeeeeccccc-----------CCceEEEEEeecccccccchHhhCCCcccch-heeecCCCc--hhhHHHhhhhH
Confidence 998743333333322 5688999999999999999999999999999 999999997 66666665554
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHhc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF----TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~----~~~~~l~~~l~~~L~~l 369 (815)
.. |++.......+..++..+..+.++++.|+.++..++++..++..+.+.-..+ .+...+++++.-.|++.
T Consensus 243 ~~-----Ggkt~sa~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~ 317 (728)
T KOG2142|consen 243 LK-----GGKTASAEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDAL 317 (728)
T ss_pred hh-----cCccceeecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhh
Confidence 32 7777777777888888888889999999999999999999999988874333 77788899999999888
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
.| |.|.+++++...+. +..++++++|++...++..+++.++.+.. ..||..++||+|+.+.++.++|+..+++.+.
T Consensus 318 ~l--G~kdmd~yglS~f~-Pdfqg~sf~fv~g~d~psgfGcl~VkKs~-i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~ 393 (728)
T KOG2142|consen 318 AL--GPKDMDSYGLSLFQ-PDFQGPSFYFVFGRDDPSGFGCLEVKKSA-ISGLELRTGCFCNIGACKIYPGLYLEMSQKG 393 (728)
T ss_pred cc--CcchHhhhhhhccC-ccceeeeEEEEeccCCCCceeeeeeehhh-hhceeccCCCCCCCcceeecccccHHHHHHH
Confidence 66 77888888776554 67889999999998777778887787777 9999999999999999999999999999999
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcccccccccccccccccccccccccc-CCC
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNH-SDN 528 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 528 (815)
+..|++|||. ||.+ +| ++..+.+|+..++.++..-..+..++-.++ +++++.+..++ +=+|= ...
T Consensus 394 ~~~g~~cgD~----dg~~-----~s-~~~~~~~~~~a~~~~~v~~~~~T~~lm~~~---~~se~e~~~n~-~a~Pl~~~~ 459 (728)
T KOG2142|consen 394 LSAGKGCGDN----DGQP-----VS-GYMQTPADVGAYLSAQVSDVLETDPLMKSP---VFSEQEDSDNG-IATPLLERV 459 (728)
T ss_pred hhhccccccC----CCCc-----cc-ccccchhhhhHHHHHhhhhhhhcccccccc---ccchhhhcccc-ccCCcchhh
Confidence 9999999998 5665 77 888999999999999987766666554433 34545333331 00000 111
Q ss_pred CCCccEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCC
Q psy16512 529 INKENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSG 608 (815)
Q Consensus 529 ~~~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~ 608 (815)
..++..+.++..|||| |+.++++ ++....+|+.+||.||++|-+|..+++++++++.+|.++++. +...+++
T Consensus 460 ~~~R~~d~~~~s~~~~-~~~~EI~-~~~~~~~gl~~~~s~m~~~~~~~alr~etE~e~~Li~~~~~~------~~d~~~~ 531 (728)
T KOG2142|consen 460 QLKRHFDAAVASYPIK-CAAFEIE-EENSGSQGLKYDRSWMSVDMNGSALRQETESELCLIGPRIKV------QEDEQSE 531 (728)
T ss_pred cccchhhhhhhhhhhh-hceeEee-ccCccccccccccccccccccccceeeecccceeeeccccch------hhhcccc
Confidence 1244678899999999 9999999 999999999999999999999999999999999999999853 1111221
Q ss_pred eeEEEecCCC--CCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEE-EEecCCCCC-CcccccccccceeeecHHh
Q psy16512 609 STVEIGIDNE--GLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRL-IRISKRSSK-RNINSFSNMGQYLLITLPS 684 (815)
Q Consensus 609 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L-~~~~~~~~~-~~~~~f~d~~p~~l~s~~S 684 (815)
..+.++..-+ ....+.+..| .+++++|+++....|++.-.|+..+.. +..-..... ....+..+...+...+...
T Consensus 532 ~~vs~~~sl~~~~a~~~s~~d~-~~c~~iDh~~~lgln~t~~r~r~ll~wl~~sl~~~~~~~~~~~~~nlvq~ygpk~~~ 610 (728)
T KOG2142|consen 532 RRVSFPTSLEQGEASKCSSYDC-PPCRGIDHVDSLGLNLTTNRGRELLNWLVQSLRNLQHSESSSTTVNLVQIYGPKTKY 610 (728)
T ss_pred eeecchhhhhhhhhhhcccccC-ccccccchhhhhhHHhhhhhhhhHHHHHHHhcccccccccccccccceeeecCcccc
Confidence 1222221111 1223334444 458899999999999998777652111 110000000 0000001111111112211
Q ss_pred HHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCcceEEEecCCCCeEEEecccCCCccccccCccCCCCCCCh
Q psy16512 685 IQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVP 762 (815)
Q Consensus 685 l~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd~~tg~~~~~~ 762 (815)
.+-.+... ...--..|||.||||++. ..|+|-.|+.+-|| .+.|.+ ||.| ++||.++++..+.
T Consensus 611 erG~~~~f----nl~d~~~~fr~p~IV~~l-ae~E~isl~~~~l~----~iri~d--p~~r----~~dq~~~~r~~~~ 673 (728)
T KOG2142|consen 611 ERGPAVAF----NLFDLSKRFRAPIIVNKL-AEREEISLGELSLG----HIRIQD--PCHR----DIDQLLGQRRGRT 673 (728)
T ss_pred ccChhhee----ehhhhhccccchhhhcch-hhhhcccccceeee----eeEEec--Ccch----hhhHHhhhhcccc
Confidence 11111110 001125699999999999 99999999999999 777777 9999 6899999986543
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=329.49 Aligned_cols=359 Identities=17% Similarity=0.209 Sum_probs=274.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++|||+++.+++++.+.+++.+.+. ..++||++.+.........++++|+.+++++|+++++ |++|+|+|+++..++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--i~~~~g~t~a~~~~~ 77 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAAS-QYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQG--IYFTSGGTESNYLAI 77 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHH-hcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCcHHHHHHHHH
Confidence 3799999999999999999987665 3456777654444444455899999999999998876 999999999999988
Q ss_pred hhhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++.. ++|+ ++++..+|+++..+...++..| .++++.++..+++.+++++ .+++++|++++++||
T Consensus 78 ~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l-------~~~~~lv~~~~~~n~ 150 (381)
T PRK02948 78 QSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAI-------TPDTVLASIQHANSE 150 (381)
T ss_pred HHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhc-------CCCCEEEEEECCcCC
Confidence 87742 4677 8888889999888776776666 4566655566777776533 467899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|.++|+ ++|+++++|+++++|..++++..+++|+++.|+||++| |+|+|+++++++..
T Consensus 151 tG~~~~~~~I~~l~~-----------~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~g-p~G~G~l~~~~~~~- 217 (381)
T PRK02948 151 IGTIQPIAEIGALLK-----------KYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYG-PKGVGAVYINPQVR- 217 (381)
T ss_pred cEeehhHHHHHHHHH-----------HcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCC-CCcEEEEEEcCCCC-
Confidence 999999999999999 89999999999999998999888999999999999998 99999999988751
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.+...++. ...+++.||+|.++++++.++++.+.+..... +++.++++++.+.|+++
T Consensus 218 -~~~~~~~~~-----------------~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 276 (381)
T PRK02948 218 -WKPVFPGTT-----------------HEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTL--- 276 (381)
T ss_pred -CCCcccCCC-----------------CCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 222211111 12457889999999999999998864432333 99999999999999987
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhhhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQRFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~~~g~~~~~~~ 447 (815)
+++++.... .....+.++.|.+++.++ .++...|.++||.++.|+.|+.+. ....+|.+..
T Consensus 277 ----~~~v~~~~~--~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~--- 342 (381)
T PRK02948 277 ----PLPIEVEGH--STSCLPHIIGVTIKGIEG-----QYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYE--- 342 (381)
T ss_pred ----CCCEEEeCC--CccCcCCEEEEEeCCCCH-----HHHHHhcccCCEEEEchHhcCCCCCCCCHHHHHcCCChH---
Confidence 333321110 012345678887765333 346677889999999999987543 2223343211
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|||++.++|++|+++++++|++++.
T Consensus 343 ------------------~~~~~lRis~~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 343 ------------------EAKQFVRFSFGQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred ------------------HhCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 0137899999999999999999999998754
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=319.40 Aligned_cols=355 Identities=20% Similarity=0.218 Sum_probs=273.3
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.+|||+++.+++|+.+.+++.+.+... ..++++.+.........++++|+.+++++|+++++ |++++|+++++.+++
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~--v~~~~~~t~~l~~~~ 94 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRS-NANRGGAYESSRRADQVVDDAREAVADLLNADPPE--VVFGANATSLTFLLS 94 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhc-CCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCe--EEEeCCHHHHHHHHH
Confidence 599999999999999999988876532 23443332222222233889999999999998765 999999999999888
Q ss_pred hhh--ccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 142 EYF--EFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 142 ~al--~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
.++ .+++|| ||++..+|++.+. +...++..| .++++. ++.++++.+++++ +++|++|++++++|
T Consensus 95 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i-------~~~~~lv~i~~~~n 167 (397)
T TIGR01976 95 RAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLL-------SPRTRLVAVTAASN 167 (397)
T ss_pred HHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhc-------CCCceEEEEeCCCC
Confidence 776 347898 8888889988754 556666666 455554 3456666665533 46799999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
+||.+.|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||||| |. +|+++++++++
T Consensus 168 ~tG~~~~~~~i~~~~~-----------~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~l~~~~~~~ 234 (397)
T TIGR01976 168 TLGSIVDLAAITELVH-----------AAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFG-PH-MGILWGRPELL 234 (397)
T ss_pred CCCccCCHHHHHHHHH-----------HcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcC-Cc-eEEEEEcHHHH
Confidence 9999999999999999 89999999999999988888888899999999999998 74 89999999887
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh---------------h-HHHHH
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK---------------S-FTNAF 356 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~---------------~-~~~~~ 356 (815)
+.+.+....+. ....+.+|+.||+++..++++.++++++...+. . .++..
T Consensus 235 ~~l~~~~~~~~--------------~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 300 (397)
T TIGR01976 235 MNLPPYKLTFS--------------YDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYEN 300 (397)
T ss_pred hhCCCccccCc--------------cCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHH
Confidence 77655432110 123356799999999999999999999877641 1 16778
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhh
Q psy16512 357 ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ 436 (815)
Q Consensus 357 ~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~ 436 (815)
++++++++.|+++ ++++++.+.. ...+++++.|.+.+.+ ..++.+.|.++||.++.|++|.+...
T Consensus 301 ~l~~~l~~~L~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~- 365 (397)
T TIGR01976 301 RLAEYLLVGLSDL------PGVTLYGVAR---LAARVPTVSFTVHGLP-----PQRVVRRLADQGIDAWAGHFYAVRLL- 365 (397)
T ss_pred HHHHHHHHHHhcC------CCEEEeCCCC---ccCCCceEEEEeCCcC-----HHHHHHHHHHCCeEEEeCccchHHHH-
Confidence 8999999999887 5688887532 1235788888875432 23588889999999999988875543
Q ss_pred hhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 437 RFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 437 ~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.++|++. ..+++|||+++++|++|+++++++|
T Consensus 366 ~~~~~~~-----------------------~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 366 RRLGLND-----------------------EGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHhCCCC-----------------------CCCeEEEEeeccCCHHHHHHHHHhC
Confidence 3344321 1368999999999999999999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=314.60 Aligned_cols=364 Identities=23% Similarity=0.306 Sum_probs=274.8
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+|||+++.+ ++|+.+.+++.+.+.. ...+++.. +.........++++++.+++++|++..+ +|++|+|+|+++.++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~v~~~~g~t~al~~~ 78 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKN-YGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSA-HVVFTNNATTALNIA 78 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHh-cCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCC-eEEEeCCHHHHHHHH
Confidence 589998877 5667888877766543 22344332 1111111233889999999999986542 499999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+.++. ++|| ++++..+|+++.. +...++..| .++.+.++..+++.+++++ ++++++|++++++|+|
T Consensus 79 ~~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~-------~~~~~~v~~~~~~n~t 150 (376)
T TIGR01977 79 LKGLL-KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAI-------KTNTKLIVVSHASNVT 150 (376)
T ss_pred HHhcc-CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhc-------CCCCeEEEEECCCCCc
Confidence 99976 8898 8888888988754 444555545 4455555556677666533 4679999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.++|+++|.++|+ ++|+++++|++|++|..++++..+++|++++|+|||+++|.|+|+++++++..
T Consensus 151 G~~~~~~~i~~l~~-----------~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~-- 217 (376)
T TIGR01977 151 GTILPIEEIGELAQ-----------ENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGIK-- 217 (376)
T ss_pred cccCCHHHHHHHHH-----------HcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCcC--
Confidence 99999999999999 89999999999999999999988999999999999998899999999988762
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~ 372 (815)
+++...++.... .. ........+.+|+.||+++..++++.++++++.+.+... ++..++++++.+.|.++
T Consensus 218 ~~~~~~~~~~~~--~~---~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~--- 289 (376)
T TIGR01977 218 LKPLKSGGTGSH--SA---LIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREI--- 289 (376)
T ss_pred cCceecCCCccc--cc---cccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC---
Confidence 444443332211 00 011123345678899999999999999999998876543 89999999999999887
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
++++++.+.. +..+.++++|.+++.+. .++.+.|.++ ||.++.|.+|+..... .+|
T Consensus 290 ---~~~~~~~~~~---~~~~~~~v~~~~~~~~~-----~~~~~~L~~~~gi~v~~g~~~~~~~~~-~~g----------- 346 (376)
T TIGR01977 290 ---NKVKIYGPAD---PANRVGVVSFTVEGIDS-----EEVADILDEKFDIATRTGLHCAPLAHK-TIG----------- 346 (376)
T ss_pred ---CCeEEeCCCC---ccccCCeEEEEECCCCH-----HHHHHHHhccCCEEEEcccccchHHHH-HhC-----------
Confidence 7889887532 12357899999865433 3578888766 9999999988765432 122
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
....+.||+|++.++|++||++++++|++
T Consensus 347 -------------~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 347 -------------TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred -------------CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 12247899999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=316.89 Aligned_cols=388 Identities=19% Similarity=0.245 Sum_probs=281.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhh-ccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKE-NIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~-~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
.+|||+++.+++++.+.+++.+++.. ..++|+++. ..........++++|+.+++++|+++++ +++++|+|+|+++
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~--v~~~~g~t~al~~ 81 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPRE--IVFTSGATESDNL 81 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCe--EEEeCCHHHHHHH
Confidence 48999999999999999998876641 345677653 1111112334889999999999998876 9999999999999
Q ss_pred HHhhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 140 VSEYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 140 ~~~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++.++. +++|| ||++..+|+++......+...| .++++.++.++++.++++| ++++++|++++++
T Consensus 82 ~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i-------~~~t~lv~~~~~~ 154 (404)
T PRK14012 82 AIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAM-------RDDTILVSIMHVN 154 (404)
T ss_pred HHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhc-------CCCCEEEEEECcC
Confidence 988764 37888 8888999999876555544455 5556656666777777644 4679999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|+||.+.|+++|.++|+ ++|+++++|++|++|..++++...++|++++|+||++| |.|+|+++++++.
T Consensus 155 n~tG~~~~~~~I~~la~-----------~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~g-p~g~G~l~~~~~~ 222 (404)
T PRK14012 155 NEIGVIQDIAAIGEICR-----------ERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYG-PKGIGALYVRRKP 222 (404)
T ss_pred CCccchhhHHHHHHHHH-----------HcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccC-CCceEEEEEecCC
Confidence 99999999999999999 89999999999999999989988899999999999887 8899999999876
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~ 370 (815)
..++.+...|++. ..+++.||+++..++++.++++.+......+ ++.+++++++.+.|+++
T Consensus 223 ~~~~~~~~~g~~~-----------------~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~~- 284 (404)
T PRK14012 223 RVRLEAQMHGGGH-----------------ERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKDI- 284 (404)
T ss_pred CCCCCceecCCCc-----------------cCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC-
Confidence 5555555544432 1357788999999999999998776432333 88999999999999887
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccc--eEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGN--IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~--i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
++++++++.. ....+ .++|.+. +. ..+...| +++.+++|.+|.+...++... ..
T Consensus 285 -----~~i~~~~~~~----~~~~~~~~~~~~~~--~~-----~~~~~~l--~~~~i~~g~~~~~~~~~~~~~------~~ 340 (404)
T PRK14012 285 -----EEVYLNGDLE----QRVPGNLNVSFNYV--EG-----ESLIMAL--KDLAVSSGSACTSASLEPSYV------LR 340 (404)
T ss_pred -----CCEEEeCCcc----ccCCCEEEEEEeCc--CH-----HHHHHhC--CCeEEEchhhhCCCCCCCCHH------HH
Confidence 6787764321 12223 3444432 22 2355555 478889998887654321100 00
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcccccccccccccccccccccccccc
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADFVSIGDICLINNQRAESSKGFFLNH 525 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (815)
. ++ +.+....+.||+|++.++|++|+++++++|++++.+-... ...++. ...+.+.++..|.++
T Consensus 341 ~------~~----~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 404 (404)
T PRK14012 341 A------LG----LNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLREL--SPLWEM-FKEGVDLNSIEWAHH 404 (404)
T ss_pred H------cC----CChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhh--ccchhh-ccccCCCCccCCCCC
Confidence 0 11 1112235899999999999999999999999976543111 111222 333556666667654
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.40 Aligned_cols=361 Identities=24% Similarity=0.318 Sum_probs=280.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCchhhHHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~t~al~~~ 140 (815)
+|||+++.+++|+.+++++.+.+.+ .+.+|++. +.........+.++++.+++++|++ +++ +++|+|+|+++.++
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--v~~~~g~t~a~~~~ 77 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRH-YNANVHRGVHELSARATDAYEAAREKVARFINAPSPDE--IIFTRNTTEAINLV 77 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHh-cCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCe--EEEeCCHHHHHHHH
Confidence 5899999999999999999887754 46677663 2222223334889999999999997 554 99999999999999
Q ss_pred HhhhccC--CCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 141 SEYFEFN--EGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 141 ~~al~~~--~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+.++... +|+ ||++..+|++.+. +...++..| .++++.++.++++.+++++ .+++++|++++++|
T Consensus 78 ~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~~~~ 150 (373)
T cd06453 78 AYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLL-------TERTKLVAVTHVSN 150 (373)
T ss_pred HHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHh-------cCCceEEEEeCccc
Confidence 9999843 788 8999999998654 344444555 5666655667777777644 35799999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
+||.+.|+++|.++|+ ++|+++++|++++.|..++++..+++|++++|+||++++ .|+|+++++++.+
T Consensus 151 ~tG~~~~~~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~ 218 (373)
T cd06453 151 VLGTINPVKEIGEIAH-----------EAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP-TGIGVLYGKEELL 218 (373)
T ss_pred ccCCcCCHHHHHHHHH-----------HcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCC-CCcEEEEEchHHh
Confidence 9999999999999999 899999999999999888888888999999999999994 7899999999988
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhcc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~ 370 (815)
+.+.+...++...... .. . ...+.....+++.||+++.+++++.++++.+...+... ++..++++++.+.|+++
T Consensus 219 ~~~~~~~~g~~~~~~~-~~-~-~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~- 294 (373)
T cd06453 219 EEMPPYGGGGEMIEEV-SF-E-ETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEI- 294 (373)
T ss_pred hcCCCeecCCCccccc-cc-c-ccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC-
Confidence 8887665444332210 00 0 11122345678889999999999999999888765432 88889999999999888
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
++++++.+. ...+++++|.+++.+ ..++.+.|.++||.++.|..|..+... .+|.
T Consensus 295 -----~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~i~~~l~~~gi~i~~g~~~~~~~~~-~~~~--------- 349 (373)
T cd06453 295 -----PGVRVYGDA-----EDRAGVVSFNLEGIH-----PHDVATILDQYGIAVRAGHHCAQPLMR-RLGV--------- 349 (373)
T ss_pred -----CCeEEeCCc-----cccCCeEEEEECCcC-----HHHHHHHHHHCCEEeccCccchhHHHH-HhCC---------
Confidence 788887442 234678888876432 345888888999999999888765433 1221
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.++||+|++.++|++|+|+|+++|
T Consensus 350 -----------------~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 350 -----------------PGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred -----------------CCeEEEEecCCCCHHHHHHHHhhC
Confidence 378999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=311.04 Aligned_cols=363 Identities=14% Similarity=0.158 Sum_probs=258.5
Q ss_pred chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhh-hhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHH
Q psy16512 60 KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVL-SDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 60 ~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~-~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~ 138 (815)
+..+|||+++.++.|+.+.+++.+.+.... .++++.+.. ...... ..+.++.+ +++|+++++ |+||+|+|++++
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~-~l~g~~~~~--v~~~~~~t~~l~ 100 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWA-KIAIRGHNTGKAPWFT-LDESLLKL-RLVGAKEDE--VVVMNTLTINLH 100 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHH-HhhhccCccCCCChhh-hhhhhccc-cccCCCCCc--EEEeCCchHHHH
Confidence 457999988888888888888776554321 121111110 000011 22333345 899999887 999999999999
Q ss_pred HHHhhhccCCC--c--EEEecCCCcchhh-HHHHhhccc--e----EEcC--chhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 139 TVSEYFEFNEG--S--FIYLTDNHTSVLG-MRELVKTNQ--I----YSFS--VDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 139 ~~~~al~~~~g--d--vv~~~~~h~s~~~-~~~~~~~~g--~----v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+++.++. +++ + |+++..+|++... +...+++.| . +.+. .++..+++.+++++. ..+++|++|
T Consensus 101 ~~~~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~----~~~~~t~lv 175 (406)
T TIGR01814 101 LLLASFY-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIE----KNGDDIAVI 175 (406)
T ss_pred HHHHHhc-CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHH----hcCCCeEEE
Confidence 9999974 443 3 6777789999665 444555556 2 2333 234456666655432 235789999
Q ss_pred EEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 206 VYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++++++|.||.+.|+++|.++|+ ++|+++++|++|++|..++|+..+++|++++|+|||+++|+| |++
T Consensus 176 ~~~~v~~~tG~~~~~~~i~~~~~-----------~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l 243 (406)
T TIGR01814 176 LLSGVQYYTGQLFDMAAITRAAH-----------AKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGA 243 (406)
T ss_pred EEeccccccceecCHHHHHHHHH-----------HcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEE
Confidence 99999999999999999999999 899999999999999999999999999999999999866778 778
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~ 363 (815)
+++++....+.|...|+........+. ........+.+++.||+|+.+++++.++++++.+.+... ++..++++++.
T Consensus 244 ~v~~~~~~~~~p~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~ 322 (406)
T TIGR01814 244 FVHEKHAHTERPRLAGWWGHARPTRFK-MDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLE 322 (406)
T ss_pred EEehhhhhhcCCCCCcccCCCCccccc-cccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 887665555666655543211100000 000111224578899999999999999999998776443 89999999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|.++. .+.++++++++.. ...++++++|.++ .++ .++.+.|.++||.+...
T Consensus 323 ~~l~~~~--~~~~~~~i~~~~~---~~~r~~~v~~~~~-~~~-----~~~~~~L~~~gi~v~~~---------------- 375 (406)
T TIGR01814 323 ELIKARC--GGPPVLTIITPRD---HAQRGCQLSLTHP-VPG-----KAVFQALIKRGVIGDKR---------------- 375 (406)
T ss_pred HHHHhhc--CCCCceEEeCCCC---hhhcCCeEEEEec-CCH-----HHHHHHHHHCCEEEecc----------------
Confidence 9997751 1124688887642 2235788999886 332 35788888899986421
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~ 495 (815)
..+.||+|+ ++|||++||++++++|++++
T Consensus 376 -----------------------~~~~iRiS~~~~~nt~~did~l~~~l~~~~ 405 (406)
T TIGR01814 376 -----------------------EPSVIRVAPVPLYNTFVDVYDAVNVLEEIL 405 (406)
T ss_pred -----------------------CCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence 126899999 68999999999999998854
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=303.80 Aligned_cols=315 Identities=20% Similarity=0.284 Sum_probs=247.8
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
|||+++.+++++.+.+++.+.+.. .++||++. +.....+...++++|+.+++++|+++++ |+||+|+|+++++++.
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~--v~~~~g~t~a~~~~l~ 77 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLE-EFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEE--VIFTSGATESNNLAIL 77 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCCHHHHHHHHHH
Confidence 799999999999999999877643 35677753 3223223344899999999999998876 9999999999999988
Q ss_pred hhcc---CCC-c-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 143 YFEF---NEG-S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 143 al~~---~~g-d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.. .+| + |+++..+|+++......++..| .++++.++.++++.+++++ .+++++|++++++|+
T Consensus 78 ~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l-------~~~~~lv~~~~~~n~ 150 (353)
T TIGR03235 78 GLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAI-------RPDTLLVSIMHVNNE 150 (353)
T ss_pred HHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhC-------CCCCEEEEEEcccCC
Confidence 8752 356 5 8888899999877656555556 4455555566777776543 467899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|.++|+ ++|+++++|++|++|..++++..+++|++++|+||++| |.|+|+++++++...
T Consensus 151 tG~~~~~~~I~~l~~-----------~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~g-p~g~g~l~~~~~~~~ 218 (353)
T TIGR03235 151 TGSIQPIREIAEVLE-----------AHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYG-PKGIGALVIRKRGKP 218 (353)
T ss_pred ceeccCHHHHHHHHH-----------HcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCC-CCceEEEEEccCccc
Confidence 999999999999999 89999999999999999999998899999999999987 999999999988643
Q ss_pred c--cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcc
Q psy16512 294 V--LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 294 ~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~ 370 (815)
. +++.+++++. ..+++.||+++..++++.++++++....... ++++++++++++.|++.
T Consensus 219 ~~~~~~~~~~~~~-----------------~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~- 280 (353)
T TIGR03235 219 KAPLKPIMFGGGQ-----------------ERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQTL- 280 (353)
T ss_pred ccccCceeeCCCC-----------------cCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC-
Confidence 2 4444444322 2468899999999999999999876422223 89999999999999775
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
+++++.+.. ....++++|.+++.+ ..++.+.|.+ +|.+++|..|..+.
T Consensus 281 ------g~~~~~~~~----~~~~~i~~~~~~~~~-----~~~v~~~L~~-~i~v~~g~~~~~~~ 328 (353)
T TIGR03235 281 ------GVKLNGDPA----ETIPHILNFSIDGVN-----SEALIVNLRA-DAAVSTGSACSSSK 328 (353)
T ss_pred ------CeEEeCCcc----cccCCEEEEEeCCcC-----HHHHHHHHhC-CeEEEchhhcCCCC
Confidence 888886532 234678889876533 2358888865 89999999997654
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=284.75 Aligned_cols=356 Identities=11% Similarity=0.063 Sum_probs=262.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
..+|...+....++.+.+++...+. .++....... ++++++.+++++|++.++ .+++++++|+++..++
T Consensus 9 ~~~l~~pGP~~~~~~V~~a~~~~~~------~~~~~~~~~~----~~~~~~~l~~~~g~~~~~-~vi~~~~gt~a~~~a~ 77 (401)
T PLN02409 9 RNHLFVPGPVNIPERVLRAMNRPNE------DHRSPAFPAL----TKELLEDVKYIFKTKSGT-PFIFPTTGTGAWESAL 77 (401)
T ss_pred CceeccCCCCCCCHHHHHHhcCCCC------CCCCHHHHHH----HHHHHHHHHHHhCCCCCC-EEEEeCCcHHHHHHHH
Confidence 3467777788888888888754331 1333444555 999999999999997543 5899999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
.++. ++|| |+++...|++.. |...+++.| .++.+.+...+++.++++++ ....+++++|+++|++|+||.
T Consensus 78 ~~~~-~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~---~~~~~~~k~v~~~~~~~~tG~ 152 (401)
T PLN02409 78 TNTL-SPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVVESPWGQGADLDILKSKLR---QDTNHKIKAVCVVHNETSTGV 152 (401)
T ss_pred HhcC-CCCCEEEEeCCCchhHH-HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHh---hCcCCCccEEEEEeecccccc
Confidence 8886 8999 888887776643 556666666 55555544456666666443 000037999999999999999
Q ss_pred ccChHHHHHH--hhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 217 KYPLSWCNTV--HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 217 ~~~l~~I~~l--~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
++|+++|.++ |+ ++|+++++|+++++|..++++..+++|++++|+||||++|+|+|+++++++++++
T Consensus 153 ~~~~~~i~~l~~~~-----------~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~ 221 (401)
T PLN02409 153 TNDLAGVRKLLDCA-----------QHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEA 221 (401)
T ss_pred cCCHHHHHHHHhhh-----------ccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHH
Confidence 9999999999 88 8999999999999999999999999999999999999889999999999988776
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.+....... ..+..+..... ...++.+|+++..++++.++++++...+... ++..++++++++.|+++
T Consensus 222 ~~~~~~~~~~----~~~~~~~~~~~--~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~--- 292 (401)
T PLN02409 222 SKTAKSPRVF----FDWADYLKFYK--LGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW--- 292 (401)
T ss_pred HhcCCCCCee----cCHHHHHHHHh--cCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 6542111000 00000000000 1123467999999999999999988776544 99999999999999887
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
+++++.+.. ..+.+.+++|.++.. ++..++.+. +.++||.+..|...
T Consensus 293 ----g~~~~~~~~---~~~s~~v~~~~~p~~----~~~~~l~~~l~~~~~i~i~~G~~~--------------------- 340 (401)
T PLN02409 293 ----GLKLCTKKP---EWRSDTVTAVVVPEG----IDSAEIVKNAWKKYNLSLGLGLNK--------------------- 340 (401)
T ss_pred ----CCeeccCCh---hhcccceEEEeCCCC----CCHHHHHHHHHHhCCEEEEcCCCc---------------------
Confidence 688886532 123456677876532 222346544 47889999887421
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
..++.+||+...|++.+|+.+++++|.+.+.+-.
T Consensus 341 --------------~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 341 --------------VAGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred --------------ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1147899999999999999999999999887644
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=284.23 Aligned_cols=346 Identities=12% Similarity=0.056 Sum_probs=246.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC-CchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS-GATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~-g~t~al~~~ 140 (815)
+.||+.+..++++..+.+++.+.+. ++.|+...+.+. ++++|+.+++++|+++ .|+|+|++ |+|.+++++
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~----~~~hr~~~f~~~----~~~~r~~l~~l~~~~~-~~~v~~~~gs~T~~~~~~ 83 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALL----GRSHRQKPVKAL----LKRVIEGTRELLSLPE-GYEVGIVPGSDTGAWEMA 83 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhc----ccCcCCHHHHHH----HHHHHHHHHHHhCCCC-CceEEEECCchHHHHHHH
Confidence 5677777666666658988875432 334655666666 9999999999999853 33588875 899999999
Q ss_pred HhhhccCC-CcEEEecCCCcchhhHHHH-hhccc-----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 141 SEYFEFNE-GSFIYLTDNHTSVLGMREL-VKTNQ-----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 141 ~~al~~~~-gdvv~~~~~h~s~~~~~~~-~~~~g-----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+.++. ++ +++++...+|++- |... +++.| .++.+.....+++++. . +++|+++|.+|.
T Consensus 84 ~~~l~-~~~~~~vi~~g~f~~~--~~~~~~~~~g~~~v~~~~~~~g~~~d~~~i~-----------~-~~~V~~~h~~t~ 148 (378)
T PRK03080 84 LWSLL-GARRVDHLAWESFGSK--WATDVVKQLKLEDPRVLEADYGSLPDLSAVD-----------F-DRDVVFTWNGTT 148 (378)
T ss_pred HHhcC-CCCcceEEEeCHHHHH--HHHHHHhhcCCCCceEeccCCCCCCCHhhcC-----------C-CCCEEEEecCCc
Confidence 99996 64 4455556788773 3332 23223 4444444344433321 2 677999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|++ + ++|++++||++|++|..++|++. +|++++|+|||+++|+|+|++++++++++
T Consensus 149 tG~~~pi~~I~~--~-----------~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~ 213 (378)
T PRK03080 149 TGVRVPVARWIG--A-----------DREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVE 213 (378)
T ss_pred cceeccchhhcc--c-----------cCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHH
Confidence 999999999988 6 78999999999999999999986 79999999999998999999999999988
Q ss_pred ccCcccccCceEEEEecCCcccccccCcccccc---CCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHH
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFE---DGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~ 367 (815)
++.+...++.... +.++.........+++ .+|+++.+++++.++++++.+. |... +|.+++++++++.|+
T Consensus 214 ~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~ 289 (378)
T PRK03080 214 RLESYTPARPIPK----FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAE 289 (378)
T ss_pred hhhcccCCCCCch----hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8877655443211 1111110001122344 3567777888889999999987 5443 999999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ ++++++.+.. ..+.+.+++|++++.+. ..+. ++...+.++||.++.|.++.
T Consensus 290 ~~------~~~~~~~~~~---~~~s~~i~~~~~~~~~~-~~~~-~~~~~l~~~~i~v~~g~~~~---------------- 342 (378)
T PRK03080 290 KT------PWATPLVADP---ATRSNTSVTLDFVDAQA-AVDA-AAVAKLLRENGAVDIEPYRD---------------- 342 (378)
T ss_pred hC------CCcccccCCc---cccCccEEEEEcCCchH-HHHH-HHHHHHHHcCCeeccccccC----------------
Confidence 88 5677765321 12334689998775110 0112 24455556689888764431
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+.+|+|++.|||++||++++++|++++.
T Consensus 343 -------------------~~~~vRis~~~~~t~~di~~l~~al~~~~~ 372 (378)
T PRK03080 343 -------------------APNGLRIWCGPTVEPADVEALTPWLDWAFE 372 (378)
T ss_pred -------------------CCCcEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 036899999999999999999999998754
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=269.95 Aligned_cols=343 Identities=12% Similarity=0.095 Sum_probs=245.6
Q ss_pred hhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 67 YTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 67 ~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
+++..+.++.+.+++.+.+.. +......+. ++++++.+++++|+++++ .+++++|+|+|+.+++.++.
T Consensus 4 ~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~~~~~la~~~g~~~~~-~~~~~~~~t~al~~~~~~~~- 71 (356)
T cd06451 4 IPGPSNVPPRVLKAMNRPMLG------HRSPEFLAL----MDEILEGLRYVFQTENGL-TFLLSGSGTGAMEAALSNLL- 71 (356)
T ss_pred cCCCcCCCHHHHHHhCCCccC------CCCHHHHHH----HHHHHHHHHHHhcCCCCC-EEEEecCcHHHHHHHHHHhC-
Confidence 345556777777777543211 111223344 889999999999995432 47889999999999999997
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~ 221 (815)
.+|+ +|+....|++.. +...++..| .++.+++...+.+.+++.++ .+++++|++++++|++|.+.|++
T Consensus 72 ~~g~~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~------~~~~~~v~i~~~~~~~G~~~~~~ 144 (356)
T cd06451 72 EPGDKVLVGVNGVFGDR-WADMAERYGADVDVVEKPWGEAVSPEEIAEALE------QHDIKAVTLTHNETSTGVLNPLE 144 (356)
T ss_pred CCCCEEEEecCCchhHH-HHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHh------ccCCCEEEEeccCCCcccccCHH
Confidence 8899 877777776631 334444445 55666555567777766442 13789999999999999999999
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc--cc
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK--TF 299 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~--~~ 299 (815)
+|.++|+ ++|+++++|++|++|..++++...++|+++.|+||+|++|.|+|++++++++++.+.+ ..
T Consensus 145 ~i~~~a~-----------~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~ 213 (356)
T cd06451 145 GIGALAK-----------KHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKP 213 (356)
T ss_pred HHHHHHH-----------hcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCC
Confidence 9999999 8999999999999998888888788999999999999988899999999888766542 11
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.++.. ....+... ....+++.+++++..++++.++++++...+... ++..++++++.+.|.++ +
T Consensus 214 ~~~~~-----~~~~~~~~--~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-------g 279 (356)
T cd06451 214 KGFYF-----DLLLLLKY--WGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEAL-------G 279 (356)
T ss_pred Cceee-----cHHHHHhh--hcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------C
Confidence 11100 00000000 001126778999999999999999887654332 88889999999999886 5
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
++++.+.. ...+.++.+.++.. .+...+.+.|.++ ||.+++|..|..
T Consensus 280 ~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gI~~~~g~~~~~------------------------ 327 (356)
T cd06451 280 LKLLAKPE----LRSPTVTAVLVPEG----VDGDEVVRRLMKRYNIEIAGGLGPTA------------------------ 327 (356)
T ss_pred CeeccCcc----cCCCceEEEECCCC----CCHHHHHHHHHHhCCEEEeccccccc------------------------
Confidence 67765421 12233444544321 2344688888887 999987753210
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++||+|++.++|++|+++++++|+++++
T Consensus 328 -----------~~~iRis~~~~~~~e~v~~~~~~l~~~~~ 356 (356)
T cd06451 328 -----------GKVFRIGHMGEATREDVLGVLSALEEALK 356 (356)
T ss_pred -----------CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-30 Score=232.84 Aligned_cols=118 Identities=32% Similarity=0.592 Sum_probs=66.7
Q ss_pred cEEeeeeeccccccCceeeccEEEEEecCCC-cCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCeeE
Q psy16512 533 NKLVSIYIYPVKACGFFKVESKWEVTASGLK-FDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTV 611 (815)
Q Consensus 533 ~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~-~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~~ 611 (815)
++|++|||||||||+|++++ ++++++.|+. +||+|||+|++|+++|+|++|+|++|++.++.+++.|++++|+++ .+
T Consensus 2 ~~v~~L~iyPIKS~~g~~~~-~~~~~~~Gl~~~DR~~~l~d~~g~~it~r~~P~l~~i~~~~~~~~~~l~l~~~~~~-~l 79 (120)
T PF03476_consen 2 GRVSSLYIYPIKSCRGIEVD-EAEVTPSGLKAGDRRFMLVDEDGRFITQRQYPRLALIRPEIDEDDGTLTLSAPGMP-PL 79 (120)
T ss_dssp -------------------------------GT--SEEEEETTS-EE-TTT-GGGG--EEEE---SSEEEEE-SSS--EE
T ss_pred cccccccccccccccccccc-ccccccccCCccchhheeECCCCCEEeeccCcceeeEEEEeecceeEEEEECCCCc-eE
Confidence 68999999999999999999 9999999996 999999999999999999999999999999888999999999999 99
Q ss_pred EEecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCC
Q psy16512 612 EIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRK 652 (815)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~ 652 (815)
.+++.........+++|++.+.+++||+++++|||++||+|
T Consensus 80 ~i~~~~~~~~~~~v~v~~~~~~~~~~gd~~~~WfS~~Lg~p 120 (120)
T PF03476_consen 80 EIPLPDSTGPRTEVQVWGDTVEAYDCGDEASEWFSEFLGRP 120 (120)
T ss_dssp EEESSSS-S-EEEEEETTEEEEEEE--HHHHHHHHHHT---
T ss_pred EEEcccccCCEeeEEEECCEeEEEECCHHHHHHHHHHHCcC
Confidence 99999656678899999999999999999999999999987
|
The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.; PDB: 2EXN_A. |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=261.61 Aligned_cols=315 Identities=11% Similarity=0.084 Sum_probs=228.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEE-ecCCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIY-LTDNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~-~~~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
++++|+.+++++|++++...|++|+|+|++++.++.++. .+|+ +|+ ....|++. +...++..| .++++.++
T Consensus 37 ~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~-~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v~~~~~~ 113 (363)
T TIGR02326 37 VEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV-PKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVVDTGEVE 113 (363)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC-CCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCCC
Confidence 899999999999997653359999999999999999997 5665 444 44445432 234455555 56666666
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
..+++.++++++ ..++++++.+++++|+||.++|+++|.++|+ ++|+++++|+++++|..++++
T Consensus 114 ~~d~~~l~~~l~-----~~~~~~~v~~~~~~~~tG~~~~i~~I~~l~~-----------~~g~~livD~~~~~g~~~~~~ 177 (363)
T TIGR02326 114 PPDVVEVEAILA-----ADPAITHIALVHCETTTGILNPIEAVAKLAH-----------RHGKVTIVDAMSSFGGIPIDI 177 (363)
T ss_pred CCCHHHHHHHHh-----hCCCccEEEEEeecCCccccCcHHHHHHHHH-----------HcCCEEEEEccccccCcccch
Confidence 678888776553 1235678999999999999999999999999 899999999999999999999
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+++|++++|+|||+++|+|+|+++++++.++.+.+...+. . ......|... . ........|++...+.++.+
T Consensus 178 ~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~-~-~~~~~~~ft~~~~~~~al~~ 251 (363)
T TIGR02326 178 AELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSL-S---LDLYDQWRCM-E-DNHGKWRFTSPTHVVHAFAQ 251 (363)
T ss_pred hhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCce-e---ecHHHHHHHH-h-ccCCCCCCCCcHHHHHHHHH
Confidence 999999999999999877999999999998776553321110 0 0000000000 0 00111223678899999999
Q ss_pred HHHHHHhhh-hh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 341 GFDTMEKKR-KS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 341 al~~l~~~~-~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
+++.+...+ .. + +++.++++++.+.|+++ +++++.+.. ...+.+++|.++... .++...+.+.|
T Consensus 252 al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~v~~~L 318 (363)
T TIGR02326 252 ALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-------GFEPLLDDE----IQSPIITSFYSPEDP--DYRFADFYQRL 318 (363)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-------CCeeccCcc----cCCceEEEEECCCCC--CCCHHHHHHHH
Confidence 998876543 22 2 88999999999999887 566665432 122345677765421 12334578888
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.++||.+++|..+. .+++|++++.+++.+|+++++++|++++
T Consensus 319 ~~~gi~v~~g~~~~------------------------------------~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 319 KEQGFVIYPGKVSQ------------------------------------VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred HHCCEEEECCcCCC------------------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 99999998774320 2689999877899999999999999865
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=260.42 Aligned_cols=335 Identities=15% Similarity=0.150 Sum_probs=229.9
Q ss_pred hhcccccchhhHHHHHHHHhhccccCCCCh-hhhh---hhhhhhHHHHHHHHHhHcCCCCCceeEEecCC-chhhHHHHH
Q psy16512 67 YTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLS---DFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG-ATSAIKTVS 141 (815)
Q Consensus 67 ~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~---~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g-~t~al~~~~ 141 (815)
+.+..+.|+.+.+++.+.+.. ++|+++. +... ....+.++++|+.++++||++. .++++||+| +|+|+++++
T Consensus 4 ~pGp~~~p~~V~~a~~~~~~~--~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~-~~~vvf~~gs~T~a~~~~~ 80 (355)
T cd00611 4 SAGPAALPEEVLEQAQKELLD--FNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPD-NYKVLFLQGGATGQFAAVP 80 (355)
T ss_pred CCCCCCCCHHHHHHHHHHHhh--cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHHHHHHH
Confidence 345678899999999887743 2265554 2222 1223449999999999999833 346999988 999999999
Q ss_pred hhhcc--CCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhh-cchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 142 EYFEF--NEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDAR-NMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 142 ~al~~--~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~-~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
.++.. .+|+.|+.. +....+.+.+++.| .++.+.++.+ +..+..+ ..+++++++|+++|.+|.|
T Consensus 81 ~~l~~~~~~~~~i~~g---~~~~~~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~lV~~~h~~t~t 151 (355)
T cd00611 81 LNLLGDKGTADYVVTG---AWSAKAAKEAKRYGGVVVIVAAKEEGKYTKIPDVET------WDLAPDAAYVHYCSNETIH 151 (355)
T ss_pred HhcCCCCCeEEEEECC---HHHHHHHHHHHhcCCCcEEEecccccCCCCCCCHhh------cCCCCCCCEEEEeCCcccc
Confidence 99962 255544332 22233555667777 4454433222 3222211 1234689999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.+.+ ++++ .+|++++||++|++|+.++|+++++ ++++|.||+|| |+|+|+++++++++++
T Consensus 152 G~~~~-----~i~~-----------~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lG-P~G~g~l~~~~~~~~~ 212 (355)
T cd00611 152 GVEFD-----EVPD-----------TGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLG-PAGVTVVIVRKDLLGK 212 (355)
T ss_pred cEEcc-----eecc-----------cCCCeEEEEccccccCCCCCHHHhC--EEEeecccccC-CCceEEEEECHHHHhh
Confidence 99843 4566 6899999999999999999998765 45577999998 9999999999999877
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHHhccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~~l~~ 371 (815)
+.+.... ...+..... .....||+|+.+++++.++++++.++ |.+. +|.+++++++++.|+++
T Consensus 213 ~~~~~~~---------~~~~~~~~~---~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~-- 278 (355)
T cd00611 213 ARKITPS---------MLNYKTHAD---NNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS-- 278 (355)
T ss_pred cccCCCC---------cccHHHHHh---cCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--
Confidence 6553210 001110001 11236899999999999999999987 5544 99999999999999998
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
|++.. .+.. ...+.+.+++|++.+. .+. .++...+.+.|+.+..+..
T Consensus 279 ----~gl~~-~~~~--~~~rs~~vvsf~~~~~---~l~-~~~~~~~~r~G~~~~~~~~---------------------- 325 (355)
T cd00611 279 ----NGFYR-GPVD--KRARSRMNVPFRLGKE---ELE-KEFLKEAEAAGMIGLKGHR---------------------- 325 (355)
T ss_pred ----ccccc-cCCC--HHHcCceEEEEEcCCh---hhh-HHHHHHHHHCCCcccCCCc----------------------
Confidence 66421 1111 0122335699998764 111 1233455567765433210
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
..|.+|+|+++|||++||++|+++|+++
T Consensus 326 ---------------~~g~vR~S~~~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 326 ---------------SVGGIRASIYNALSLEGVQALADFMKEF 353 (355)
T ss_pred ---------------ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence 1278999999999999999999999985
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=255.10 Aligned_cols=317 Identities=11% Similarity=0.068 Sum_probs=229.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~ 181 (815)
++++++.+++++|++++...+++++|+|+++..++.++. .+|+ +++....+... .+...++..| .++.+.+..
T Consensus 39 ~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~~~-~~~~~~~~~g~~~~~i~~~~~~~ 116 (368)
T PRK13479 39 TASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAYGA-RIAQIAEYLGIAHVVLDTGEDEP 116 (368)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCchHH-HHHHHHHHcCCcEEEEECCCCCC
Confidence 899999999999997644458899999999999999998 6666 66655433222 1345555566 566665556
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
.+++.++++++ ..+++++|++++++|+||.+.|+++|.++|+ ++|+++++|+++.+|..++++.
T Consensus 117 ~d~~~l~~~l~-----~~~~~~~v~~~~~~~~tG~~~~~~~i~~l~~-----------~~~~~livDa~~~~g~~~~~~~ 180 (368)
T PRK13479 117 PDAAEVEAALA-----ADPRITHVALVHCETTTGILNPLDEIAAVAK-----------RHGKRLIVDAMSSFGAIPIDIA 180 (368)
T ss_pred CCHHHHHHHHH-----hCCCCcEEEEEcccCccccccCHHHHHHHHH-----------HcCCEEEEEcccccCCcccccc
Confidence 77777776442 1245789999999999999999999999999 8899999999999998889998
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
.+++|++++|+||++++|+|+|+++++++.++.+....... . ......+...... .....|++...++++.++
T Consensus 181 ~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~---~~~~~t~~~~~~~~l~~a 253 (368)
T PRK13479 181 ELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSL-S---LDLYDQWAYMEKT---GQWRFTPPTHVVAAFYQA 253 (368)
T ss_pred ccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCe-e---ecHHHHHhhhccc---CCCCCCCcHHHHHHHHHH
Confidence 88999999999998876999999999998877664322110 0 0000000000001 112237888999999999
Q ss_pred HHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 342 FDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 342 l~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
++.+...+ ... +++.++++++.+.|+++ +++++.+.. ...+.+++|.++.... ++..++.+.|.
T Consensus 254 l~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~l~~~L~ 320 (368)
T PRK13479 254 LLELEEEGGVPARGARYANNQRTLVAGMRAL-------GFEPLLDAE----IQSPIIVTFHAPADPA--YDFKEFYERLK 320 (368)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCch----hcCceEEEEECCCCCC--cCHHHHHHHHH
Confidence 99876543 222 88899999999999887 566654321 1224557776654321 23345888899
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++||.++.|..+. .+++|+|...+++.+|+++++++|++++.+
T Consensus 321 ~~gi~v~~g~~~~------------------------------------~~~iRis~~~~~t~edi~~~l~~L~~~l~~ 363 (368)
T PRK13479 321 EQGFVIYPGKLTQ------------------------------------VDTFRIGCIGDVDAADIRRLVAAIAEALYW 363 (368)
T ss_pred HCCEEEecCCCCC------------------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998763210 257999987789999999999999998753
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=253.00 Aligned_cols=326 Identities=15% Similarity=0.142 Sum_probs=233.9
Q ss_pred ccchhhHHHHHHHHhhccccCCCCh--------hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC-chhhHHHHHh
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGN--------SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG-ATSAIKTVSE 142 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~--------~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g-~t~al~~~~~ 142 (815)
++|..+++++.+.+... .|.++. ....+. ++++++.++++|+++ ++|+|+|++| +|.|+++++.
T Consensus 2 ~~p~~v~~~~~~~~~~~--~~~~~~~~~~~hr~~~f~~~----~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~ 74 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNF--NGTGMSVMEISHRSKEFEAV----ANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPL 74 (349)
T ss_pred CCCHHHHHHHHHHHhCc--cCCCccccccCCCchHHHHH----HHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHH
Confidence 57888999988876632 243433 223344 999999999999973 3456888866 9999999999
Q ss_pred hhccCCCc-EEEecCCCcchhhHHHHhhccc---eEEcCc----hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSFSV----DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~~~----~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++. .+|+ +++.... ..-..+.+.+++.| .+..++ ....+++.++ ..+++++|+++|..|.|
T Consensus 75 nl~-~~~~~~l~i~~G-~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~th~ETst 143 (349)
T TIGR01364 75 NLL-AEGKVADYIVTG-AWSKKAAKEAKKYGVVNVVASGKEGNYTKIPDPSTWE---------ISEDAAYVHYCANETIH 143 (349)
T ss_pred hcC-CCCCeEEEEECC-HHHHHHHHHHHHhCCcEEEeccccCCCCCCCCHHhcC---------CCCCCCEEEEcCCCCcc
Confidence 998 6777 4443321 12234778888877 233221 1223333222 13578999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|...| ++++ .++++++||+++++|..++|++++ |++++|.||+|| |+|+|+++++++++++
T Consensus 144 Gv~~~-----~l~~-----------~~~~l~iVDavss~g~~~id~~~~--d~~~~ssqK~lg-P~Glg~l~~s~~~~~~ 204 (349)
T TIGR01364 144 GVEFR-----ELPD-----------VKNAPLVADMSSNILSRPIDVSKF--GLIYAGAQKNIG-PAGLTVVIVRKDLLGR 204 (349)
T ss_pred cEecc-----eecc-----------cCCCeEEEEccccccCccCCHHHc--cEEEEecccccC-CCceEEEEECHHHHhh
Confidence 99987 6666 789999999999999999999875 599999999998 9999999999999887
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHHhccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~~l~~ 371 (815)
+.+... ...++.... ......||+|+..++++.++++++.++ |... +|.+++++++++.|+++
T Consensus 205 ~~~~~~---------~~~~~~~~~---~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~-- 270 (349)
T TIGR01364 205 ASRITP---------SMLNYKIHA---ENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS-- 270 (349)
T ss_pred cccCCC---------CcchHHHHH---hcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC--
Confidence 765211 011111000 112335899999999999999999987 4544 99999999999999998
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
+++....... ..+.+.+++|.+++. .+. .++.+.+.++||.+..|..
T Consensus 271 ----~gl~~~~~~~---~~rs~~v~sf~~~~~---~~~-~~~~~~~~~~Gi~~~~~~~---------------------- 317 (349)
T TIGR01364 271 ----NGFYRNPVDP---RNRSRMNVVFTLGNE---ELE-KRFLKEAEERGLVSLKGHR---------------------- 317 (349)
T ss_pred ----CCeeccCCCH---HHcCCeEEEEecCCh---hHh-HHHHHHHHHCCCcccCCcc----------------------
Confidence 6655443211 123346789987753 111 2455677778886554421
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+.+|+|++.|||.|||++|+++|+++..
T Consensus 318 ---------------~~g~vRvS~~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 318 ---------------SVGGMRASIYNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred ---------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 036899999999999999999999998654
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=254.69 Aligned_cols=352 Identities=12% Similarity=0.100 Sum_probs=249.5
Q ss_pred cchhhhhhhhc--------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-C-CceeEE
Q psy16512 59 LKDICYLDYTG--------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-S-DHYSVI 128 (815)
Q Consensus 59 ~~~~iyLd~a~--------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~-~~~~iv 128 (815)
....+|+|+++ ++++.+.+.+.+...+.. .++||++.....++ .+++++++++++|++ + ++ ++
T Consensus 31 ~~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~-~~~np~s~~~~~~l----e~~~~~~la~llg~~~~~~~--~~ 103 (431)
T TIGR01788 31 IHDELSLDGNPRLNLATFVTTWMEPEARKLMDETINK-NMIDKDEYPQTAEI----ENRCVNMLADLWHAPAKDAE--AV 103 (431)
T ss_pred HHHHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhc-CCCCcccCccHHHH----HHHHHHHHHHHhCCCCCCCC--Ce
Confidence 34468899998 888888888887776653 46788876444455 899999999999998 3 34 55
Q ss_pred e--cCCchhhHHHHHhhhcc-------CCC------cEEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhh
Q psy16512 129 F--TSGATSAIKTVSEYFEF-------NEG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKES 191 (815)
Q Consensus 129 ~--t~g~t~al~~~~~al~~-------~~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l 191 (815)
+ |+|+|+|+++++.+... ..| .++++..+|+|+.......+..- .++++++ +.++++.++++|
T Consensus 104 g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i 183 (431)
T TIGR01788 104 GTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAV 183 (431)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHH
Confidence 4 89999999998866531 111 28888999999876655543222 7788765 367888887755
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC------CeEEEEecccc-------cCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS------NCFVLLDAATY-------CGSNML 258 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~------gi~vivD~a~~-------~g~~~~ 258 (815)
+++|.+|++++++|.||.+.|+++|+++|+ ++ ++++|||++++ .+..+.
T Consensus 184 -------~~~t~lV~~t~g~t~tG~idpi~~I~~i~~-----------~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~ 245 (431)
T TIGR01788 184 -------DENTIGVVCILGTTYTGEYEDVKALNDALD-----------EYNAKTGWDIPIHVDAASGGFIAPFVYPDLEW 245 (431)
T ss_pred -------hhCCeEEEEEeCCCCCcccCCHHHHHHHHH-----------HHHhhhCCCceEEEecccHHHHHHHhCCCchh
Confidence 367899999999999999999999999999 67 89999999999 455566
Q ss_pred CCCCCCCcEEEEccccccccCCcceEEEEeccc--cccc--CcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTGLGALIVKQKS--AHVL--NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~--~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
++...++|++++|+|||+.+|.|+|+++++++. .+.+ .+.+.++.... + .+ .++.+...
T Consensus 246 ~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~-------~---------t~-~~sR~g~~ 308 (431)
T TIGR01788 246 DFRLPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPT-------F---------TL-NFSRPANQ 308 (431)
T ss_pred hcCCCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCC-------c---------ce-ecCchHHH
Confidence 666667899999999998559999999998752 1211 11233322100 0 01 12223223
Q ss_pred HHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 335 IISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
.+++...+..+...|.. .++..++++++.+.|+++ |+++++.+. ...++++|++.+......+..+
T Consensus 309 al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~------~~~el~~~~------~~~~iV~Fr~~~~~~~~~~~~~ 376 (431)
T TIGR01788 309 VIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKL------GPFEIISDG------SGIPLVAFKLKDDADPGYTLYD 376 (431)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhC------CCEEEeeCC------CCceEEEEEeCCCCCCCcCHHH
Confidence 33344444444443322 289999999999999998 789999752 1379999999753322345567
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++|+.+..-. .|... +| .-++|+++....+.+.++.|++.|+
T Consensus 377 l~~~L~~~G~~~~~~~--~p~~~----------------------------~~--~~~lR~~~~~~~~~~~~~~~~~~~~ 424 (431)
T TIGR01788 377 LSHRLRERGWIVPAYT--LPKNA----------------------------ED--IVVMRIVVREGFSRDLAELLIEDIE 424 (431)
T ss_pred HHHHHHHCCCcccCCC--CCCcc----------------------------CC--eEEEEEEecCCCCHHHHHHHHHHHH
Confidence 8899999998753211 11000 11 2579999988889999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+++.
T Consensus 425 ~~~~ 428 (431)
T TIGR01788 425 AALA 428 (431)
T ss_pred HHHH
Confidence 8753
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=251.35 Aligned_cols=351 Identities=15% Similarity=0.080 Sum_probs=239.8
Q ss_pred hhhhhh-cccccchhhHHHHHHHHhhccccCCCC-hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 63 CYLDYT-GAGVYSQSQMNQTIEQLKENIFSHPHG-NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 63 iyLd~a-~~~~~p~~v~~al~~~l~~~~~~np~s-~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+.||-. ..+++++.+.+++.++.. .++||++ .+.........++++++.+++++|++. +++++|+++|+.++
T Consensus 21 ~~~~~~~~~~p~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~----~~~~~g~t~a~~~a 94 (387)
T PRK09331 21 INLDPIQRGGILTPEARKALIEYGD--GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE----ARVTHGAREGKFAV 94 (387)
T ss_pred cccChhhcCCCCCHHHHHHHHHHHh--ccCCCcccccccccccChHHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHH
Confidence 444433 356788888998887663 3456654 222222223348999999999999853 78899999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
+.++. ++|| |+++..+|.+.+......+... .++. +.++..+++.++++++.......+++++|++++++|+||.
T Consensus 95 l~~l~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~ 173 (387)
T PRK09331 95 MHSLC-KKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGN 173 (387)
T ss_pred HHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcc
Confidence 99997 8999 8888888988765433322221 5555 4455677888777553110011246899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccC
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~ 296 (815)
+.|+++|.++|+ ++|+++++|++|+.|..+++...+++|++++|+||++++|.|+|++++++++++.+.
T Consensus 174 ~~~l~~I~~la~-----------~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~ 242 (387)
T PRK09331 174 LADAKKVAKVAH-----------EYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVF 242 (387)
T ss_pred cccHHHHHHHHH-----------HcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcc
Confidence 999999999999 899999999999999989998888999999999999988888999999988776553
Q ss_pred cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCC
Q psy16512 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQP 376 (815)
Q Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p 376 (815)
........ . ...+..++.+....+++.++++.+.......++..++++++++.|+++ +
T Consensus 243 ~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~l------~ 300 (387)
T PRK09331 243 RTSRKFGV------------K----EVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWFVDELEKI------E 300 (387)
T ss_pred cccCCCcc------------c----ceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence 32100000 0 000112233434455555566554433223366677888999999998 7
Q ss_pred cEEEcCCCCCCCCCcccceEEEEEecC----CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 377 LVELYHDTDYGESKYQGNIVNFNLLHK----DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~i~~f~~~~~----~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++++.+.. ...+++.+..+.. .........+.+.|.++||..-..
T Consensus 301 g~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~------------------------- 350 (387)
T PRK09331 301 GFKQLGEKP-----RNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP------------------------- 350 (387)
T ss_pred CEEEeccCc-----CcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEcc-------------------------
Confidence 899885321 2356777765421 111111224778888889973210
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+ ....+|+.. ...+++|+++++++|++++.+
T Consensus 351 ------------~-~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 351 ------------G-ATKEFKLST-YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred ------------C-CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence 0 024566665 336999999999999997654
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=250.52 Aligned_cols=338 Identities=15% Similarity=0.140 Sum_probs=236.1
Q ss_pred hhhhhcccccchhhHHHHHHHHhhc---cccC---CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec-CCchhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKEN---IFSH---PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT-SGATSA 136 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~---~~~n---p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t-~g~t~a 136 (815)
+|-+.+.+..|+.+++++.+.+.+. ..+. .|+..+..+. ++++++.++++||++. +|+++++ +++|.|
T Consensus 5 ~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~----~~~~~~~l~~l~~~~~-~~~v~~~~gsgt~~ 79 (360)
T PRK05355 5 YNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAV----AEEAEADLRELLNIPD-NYKVLFLQGGASLQ 79 (360)
T ss_pred eeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHH----HHHHHHHHHHHhCCCC-CcEEEEEcCCchHH
Confidence 4556778889999999998876431 0111 1333444466 9999999999999843 3446555 678888
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc---eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+++++.++. .+|+ +++... ...-..+.+.+++.| .+..++ .+..+..++++ ..+++++++|+++|..
T Consensus 80 ~Ea~~~nl~-~~g~~~l~i~~-G~fg~r~~~~a~~~g~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~V~~th~e 151 (360)
T PRK05355 80 FAMVPMNLL-GGGKKADYVDT-GSWSKKAIKEAKKYGEVNVAASSEDDGFTYIPPLDE------WQLSDDAAYVHYTSNE 151 (360)
T ss_pred HHHHHHhcC-CCCCeEEEEEC-CHHHHHHHHHHHHhCCceEEecccccCCCCCCChhh------ccCCCCCCEEEEccCC
Confidence 999999998 7776 333321 122334677888777 333332 22223223222 0223568999999999
Q ss_pred CCCcccc-ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 212 NFSGTKY-PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 212 n~tG~~~-~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
|.||.+. |+++| + |++++||+++++|+.++|++++ |++++|.||+|| |+|+|+++++++
T Consensus 152 TstGv~~~~i~~i----~-------------g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lg-P~Glg~l~~s~~ 211 (360)
T PRK05355 152 TIDGTEFHELPDT----G-------------DVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIG-PAGLTIVIVRED 211 (360)
T ss_pred CcceEecCccccc----C-------------CCcEEEEcCccccCccCCHHHc--cEEEEecccccc-CCceEEEEECHH
Confidence 9999998 55544 3 7899999999999999999876 599999999998 999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHH
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~ 367 (815)
+++++.+.. + ++ .++... .......||+|+..++++.++++++.++ |... +|.+++++++++.|+
T Consensus 212 ~l~~~~~~~-~-~~-------~~~~~~---~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~ 279 (360)
T PRK05355 212 LLGRALPSI-P-SM-------LDYKTH---ADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAID 279 (360)
T ss_pred HHhhcccCC-C-hH-------HHHHHH---HhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 988776531 1 11 111100 0122345899999999999999999988 5443 999999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ +.+..+.+.. .+.+.+++|++++. ....++...+.++||.+..|..
T Consensus 280 ~~------~~~~~~~~~~----~rs~~v~sf~~~~~----~~~~~~~~~~~~~Gi~~~~~~~------------------ 327 (360)
T PRK05355 280 SS------DFYRNPVAPE----DRSRMNVPFTLADE----ELDKKFLAEAKAAGLVGLKGHR------------------ 327 (360)
T ss_pred hC------CCcccCCChh----hcCCcEEEEEcCCh----HHHHHHHHHHHHCCCcccCCCC------------------
Confidence 98 4222322211 23357799998753 1112344566667777643321
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..|.+|+|++.|||.+||++|+++|++++..
T Consensus 328 -------------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 328 -------------------SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred -------------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 0378999999999999999999999997653
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=240.74 Aligned_cols=348 Identities=12% Similarity=0.106 Sum_probs=267.4
Q ss_pred hcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
.+....++.+..++...+. + |+...+... ++++++.+...|+++.. +.+++++++|.|++.++.++. +
T Consensus 11 PGP~~v~~~V~~am~~~~~-----~-h~s~~F~~~----~~~~~~~L~~v~~t~~~-~~~ll~gsGt~amEAav~sl~-~ 78 (383)
T COG0075 11 PGPVPVPPRVLLAMARPMV-----G-HRSPDFVGI----MKEVLEKLRKVFGTENG-DVVLLSGSGTLAMEAAVASLV-E 78 (383)
T ss_pred CCCCCCCHHHHHHhcCCCC-----C-CCCHHHHHH----HHHHHHHHHHHhcCCCC-cEEEEcCCcHHHHHHHHHhcc-C
Confidence 3455667777777755332 1 455666777 99999999999998742 246778899999999999999 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
||| +++.. +...-.+|.+++++.| .+..++...++++.++++|. .++..++|+++|..++||.+.|+++
T Consensus 79 pgdkVLv~~-nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~-----~~~~~~~V~~vH~ETSTGvlnpl~~ 152 (383)
T COG0075 79 PGDKVLVVV-NGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD-----KDPDIKAVAVVHNETSTGVLNPLKE 152 (383)
T ss_pred CCCeEEEEe-CChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh-----cCCCccEEEEEeccCcccccCcHHH
Confidence 999 44443 2233456888898888 45556667888888888663 2356889999999999999999999
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccC
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~ 302 (815)
|+++++ +||++++||+..++|..++++++|++|+++.+.+|+++.|+|+|++.++++..+.+...-..
T Consensus 153 I~~~~k-----------~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~- 220 (383)
T COG0075 153 IAKAAK-----------EHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHP- 220 (383)
T ss_pred HHHHHH-----------HcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCC-
Confidence 999999 89999999999999999999999999999999999999999999999999988766432211
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
.+.++...|...+... +..+.|+++..++++.++|+.+.+.|... +|++.+++++++.+.++ |+++
T Consensus 221 ---~~ylDL~~~~~~~~~~--~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~al-------Gl~~ 288 (383)
T COG0075 221 ---SFYLDLKKWLKYMEKK--GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEAL-------GLEL 288 (383)
T ss_pred ---ceeecHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCcc
Confidence 2223333343322211 56678999999999999999999887544 99999999999999998 8998
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
+.... ..+..++++.++..-... .....+++++||.+..|..
T Consensus 289 ~~~~~----~~s~tvta~~~P~g~~~~---~~~~~~~~~~g~~i~gg~~------------------------------- 330 (383)
T COG0075 289 FADPE----RRSPTVTAIKVPEGVDDK---KVRRALLKEYGVEIAGGQG------------------------------- 330 (383)
T ss_pred ccCcc----cCCCceEEEECCCCCCcH---HHHHHHHHhCCEEeccccc-------------------------------
Confidence 87332 345677888877532211 1233566788999987632
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
...+.++||+...+-+.+|+.+++.+|...+.+-.
T Consensus 331 ----~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g 365 (383)
T COG0075 331 ----PLKGKIFRIGHMGNVRPEDVLAALAALEAALRELG 365 (383)
T ss_pred ----ccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcC
Confidence 12247899997668899999999999999887654
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=259.36 Aligned_cols=341 Identities=10% Similarity=0.090 Sum_probs=243.3
Q ss_pred cccccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHH-HHHHHHhHcCCCCCceeEEec---CCchhhHHHHHhh
Q psy16512 69 GAGVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQ-MRTKILQYFNTDSDHYSVIFT---SGATSAIKTVSEY 143 (815)
Q Consensus 69 ~~~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~-~r~~la~~~g~~~~~~~iv~t---~g~t~al~~~~~a 143 (815)
+...+++.+.+.+...+...+ .+||++.+.........+++ +|+.++++||+++++ +.++ +++++|+.+++.+
T Consensus 42 sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~--~~~~~~~~sgt~an~~v~~a 119 (452)
T PTZ00094 42 SENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEE--WGVNVQPYSGSPANFAVYTA 119 (452)
T ss_pred ccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCccc--ceeecCCCchHHHHHHHHHH
Confidence 355678888988887776432 28998885555554555774 899999999998776 6666 7899999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhh-c----cc------eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVK-T----NQ------IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~-~----~g------~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+. ++|| ||++..+|.+......... . .+ .++++.++.++.++++++++ ..++++|++. +
T Consensus 120 l~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~------~~~~~lvi~~--~ 190 (452)
T PTZ00094 120 LL-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAK------AFRPKLIIAG--A 190 (452)
T ss_pred hc-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHH------HhCCCEEEEe--C
Confidence 96 8999 8888889988654221111 1 11 23345556778888877553 1246777764 3
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC---CCCcEEEEccccccccCCcceEEEEe
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ---HQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~---~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+.+|...|+++|.++|+ ++|++++||++|++|..+.++.. .++|++++|+||||++|.| |+++++
T Consensus 191 s~~g~~~di~~I~~i~~-----------~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~ 258 (452)
T PTZ00094 191 SAYPRDIDYKRFREICD-----------SVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYR 258 (452)
T ss_pred CCCCCccCHHHHHHHHH-----------HcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEe
Confidence 45999999999999999 89999999999999998665422 2689999999999977998 888888
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYF 366 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L 366 (815)
++..+.+.+.... .....+ .|+++...++++.++++.+...+. .+ +++.++++++.+.|
T Consensus 259 ~~~~~~l~~~~~~------------------~~~p~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L 319 (452)
T PTZ00094 259 KKVKPDIENKINE------------------AVFPGL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAAL 319 (452)
T ss_pred cccchHHHHhhcc------------------ccCCCC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 7654433211100 000112 478889999999999999865442 33 89999999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe-ccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL-RTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v-~~g~~~~~~~~~~~~g~~~~~ 445 (815)
.+. +++++.+.. ..+..++.|...+.+ ...+.+.|.++||.+ +.+.+|.+...
T Consensus 320 ~~~-------g~~v~~~~~----~~~~~~v~~~~~~~~-----~~~~~~~L~~~gI~vs~~~~p~~~~~~---------- 373 (452)
T PTZ00094 320 EKR-------GYDLVTGGT----DNHLVLVDLRPFGIT-----GSKMEKLLDAVNISVNKNTIPGDKSAL---------- 373 (452)
T ss_pred HhC-------CcEEecCCC----CCceEeecCCcCCCC-----HHHHHHHHHHCCcEEecccCCCCCcCC----------
Confidence 875 677765421 112234444433322 335888888899999 45555442211
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHHhhc
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~~~~ 498 (815)
..+.||+|++.+++ ++||++++++|.+++...
T Consensus 374 ---------------------~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~ 409 (452)
T PTZ00094 374 ---------------------NPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLA 409 (452)
T ss_pred ---------------------CCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 13789999999987 999999999999988753
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=242.71 Aligned_cols=328 Identities=14% Similarity=0.096 Sum_probs=243.2
Q ss_pred hcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc-c
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE-F 146 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~-~ 146 (815)
......+...+.++...... .++||.+.+.....+....+++++++++++|+++++...+||+|+|+++..++.+.. +
T Consensus 29 p~~~~~~~~~~~~~~~~~~~-n~gnp~~~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~ 107 (380)
T PRK02769 29 PEAADFDYSALKRFFSFSIN-NCGDPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL 107 (380)
T ss_pred CchhhcCHHHHHHHHHhhhc-cCCCccccCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh
Confidence 33444444566666665544 467888775422222223789999999999998765235899999999877665542 2
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~ 224 (815)
.+++ ++++..+|+|+......++..+ .+++++++.++++.++++|+ +. +.+|.+|++++++|.||.+.|+++|+
T Consensus 108 ~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~---~~-~~~t~lvv~t~gtt~tG~idpi~~I~ 183 (380)
T PRK02769 108 FPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIK---EN-KNQPPIIFANIGTTMTGAIDNIKEIQ 183 (380)
T ss_pred CCCcEEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHH---hC-CCCcEEEEEEeCCCCCcccCCHHHHH
Confidence 4566 8888999999987766665555 77777777888888887664 11 34599999999999999999999999
Q ss_pred HHhhccccccccccCCCC---eEEEEecccccCCCC-------CCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 225 TVHRNHVFKKHFKCSRSN---CFVLLDAATYCGSNM-------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~g---i~vivD~a~~~g~~~-------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
++|+ ++| +++|||++++.+..| +|+.. ++|++++|+|||+++|.|+|+++++++..+.
T Consensus 184 ~i~~-----------~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~ 251 (380)
T PRK02769 184 EILK-----------KIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVER 251 (380)
T ss_pred HHHH-----------HhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhh
Confidence 9999 777 799999999998874 67666 8999999999999999999999999877654
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.+. ..+ .. .......||.|...++++.++++++...|... ++..++++++.+.|++.
T Consensus 252 ~~~~---~~y---l~-----------~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~--- 311 (380)
T PRK02769 252 ISVD---VDY---IG-----------SRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN--- 311 (380)
T ss_pred cccC---ccc---cC-----------CCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 4321 000 00 01124478999999999999999987766443 99999999999999876
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++++.... .++++|..+.. .+. +|..+..-
T Consensus 312 ----g~~~~~~p~-------~~~v~f~~~~~--------~~~-----~~w~l~~~------------------------- 342 (380)
T PRK02769 312 ----GIPAWRNPN-------SITVVFPCPSE--------RIW-----KKWHLATS------------------------- 342 (380)
T ss_pred ----CCEEEcCCC-------ceEEEEcCCCH--------HHH-----hCeeEccc-------------------------
Confidence 677775432 67888864421 121 45555421
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+.+....+.+.||.|++.|...+.
T Consensus 343 ---------------~~~~hi~~~~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 343 ---------------GNQAHIITMPHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred ---------------CCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 15799999999999999999999988765
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=245.23 Aligned_cols=313 Identities=12% Similarity=0.087 Sum_probs=225.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEe-cCCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYL-TDNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~-~~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
++++|+.+++++|++++...|++++|+|+++..++.++. .+++ +++. ...|++. +...+...| .++++.+.
T Consensus 33 ~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~~~i~~~~~~ 109 (355)
T TIGR03301 33 TDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLINGAYGER--LAKICEYLGIPHTDLNFSEYE 109 (355)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCCchhhH--HHHHHHHcCCceEEEecCCCC
Confidence 899999999999998753358899999999999999987 5665 5544 4444432 233444455 45555555
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
..+++.++++++ ..++++++++++++|+||.+.|+++|.++|+ ++|+++++|++++.|..++++
T Consensus 110 ~~d~~~l~~~l~-----~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~-----------~~~~~livD~~~s~g~~~~~~ 173 (355)
T TIGR03301 110 PPDLNRIEEALA-----ADPDITHVATVHHETTTGILNPLEAIAKVAR-----------SHGAVLIVDAMSSFGAIPIDI 173 (355)
T ss_pred CCCHHHHHHHHH-----hCCCceEEEEEecCCcccchhHHHHHHHHHH-----------HcCCEEEEEeccccCCcccch
Confidence 667777776443 1245778999999999999999999999999 899999999999999888888
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+++|++++|+||++++|+|+|++++++++++.+........ ......|..... .+...+|++...+.++.+
T Consensus 174 ~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~t~~~~~~~a~~~ 246 (355)
T TIGR03301 174 EELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLY----LDLYDQWAYMEK---TGKWRFTPPTHTVYAFAQ 246 (355)
T ss_pred hhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCce----eeHHHHHHHhhh---cCCCCCCCcHHHHHHHHH
Confidence 8889999999999998668899999999988776542110000 000000000000 122345889999999999
Q ss_pred HHHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 341 GFDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 341 al~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
+++.+...+ ... ++.+++++++.+.|+++ +++++.+.. ...+.++++.++... ..+..++.+.|
T Consensus 247 al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~~l 313 (355)
T TIGR03301 247 ALEELEAEGGVPARIARYRRNRELLVDGLRAL-------GFQPLLPER----WQSPIIVSFLYPDDP--DFDFDDFYQEL 313 (355)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-------CCeeecCCC----CCCCcEEEEECCCCC--cchHHHHHHHH
Confidence 999886654 222 78899999999999886 566654431 122345677765321 11224588889
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.++||.+++|..+. .+++||+++.+++.+|+++++++|+++
T Consensus 314 ~~~gi~i~~~~~~~------------------------------------~~~iRis~~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 314 KERGFVIYPGKLTL------------------------------------ADTFRIGTIGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HHCCEEEECCcccc------------------------------------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 99999998763210 168999999899999999999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=245.77 Aligned_cols=341 Identities=15% Similarity=0.157 Sum_probs=233.7
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec-CCchhhHHHHHhhhccCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT-SGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t-~g~t~al~~~~~al~~~~ 148 (815)
....++.+.+++.+.... ...-.|+.....+. ++++|+.+++++|++++ |+|+|+ +|+|.++++++.++. .+
T Consensus 11 P~~~~~~v~~a~~~~~~~-~~~~~hr~~~f~~~----~~~~r~~l~~l~~~~~~-~~v~f~~gs~T~a~~~~~~~l~-~~ 83 (361)
T TIGR01366 11 PSKVRLEQLQALTTTAAS-LFGTSHRQAPVKNL----VGRVREGLAELFSLPDG-YEVILGNGGATAFWDAATFGLI-EK 83 (361)
T ss_pred CcCCCHHHHHHHHhcCcc-ccccCcCChHHHHH----HHHHHHHHHHHhCCCCC-ceEEEECCchhHHHHHHHHhcc-cc
Confidence 445667777776543111 11123555666777 99999999999998543 458886 669999999999986 33
Q ss_pred CcEEEecCCCcchh-hHHHHhhccc---eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH
Q psy16512 149 GSFIYLTDNHTSVL-GMRELVKTNQ---IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224 (815)
Q Consensus 149 gdvv~~~~~h~s~~-~~~~~~~~~g---~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~ 224 (815)
..++++..+|.+.. .....+...+ .++.+.... ++. ...+++++|+++|.+|.||.+.|+++|
T Consensus 84 ~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~-------~~~~~~~lV~~~h~et~tG~~~pi~~I- 150 (361)
T TIGR01366 84 KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSA-----PEP-------QADPGVDVIAWAHNETSTGVAVPVRRP- 150 (361)
T ss_pred cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCC-----CCC-------ccCCCCCEEEEcccCCccceecccccc-
Confidence 33455555665432 2333321122 444433211 111 224679999999999999999999988
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCce
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGT 304 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~ 304 (815)
++ ++|++++||+++++|+.++|++. +|++++|.||++|.|+|++++++++++++++.+...++..
T Consensus 151 --~~-----------~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~ 215 (361)
T TIGR01366 151 --EG-----------SDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRW 215 (361)
T ss_pred --cc-----------cCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCC
Confidence 47 78999999999999999999985 8999999999999777899999999998887766555433
Q ss_pred EEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH--HHHHHHHHHHHHHHHhccccCCCCcEEEc
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF--TNAFELSQYTYFYFKQLSYSNGQPLVELY 381 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~ 381 (815)
... +.++........+....+|+++..++++.++++++.+.+ ... ++.+++++++++.+.++ +.++++
T Consensus 216 ~p~---~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~------~~~~~~ 286 (361)
T TIGR01366 216 VPE---FLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQER------PYATPF 286 (361)
T ss_pred Cch---hhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC------CCcccC
Confidence 221 111111111111234467888888889999999999874 333 99999999999999998 456665
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
.... ......+..+.+. ++ ++..++.+.|.++||.+..+.. .++
T Consensus 287 ~~~~---~~~s~~v~~v~~~--~g--~~~~~v~~~L~~~gI~i~~~~~--------~l~--------------------- 330 (361)
T TIGR01366 287 VTDP---GKRSQVVGTIDFV--DD--IDAATVAKILRANGIVDTEPYR--------KLG--------------------- 330 (361)
T ss_pred CCCh---hhcccceEEEECC--Cc--cCHHHHHHHHHHCCCeeccCcc--------ccC---------------------
Confidence 4321 0111222333332 22 4556788889889999865421 011
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.+|+|++.|+|.+||++++++|++++.
T Consensus 331 ------~~~vRis~~~~~t~~di~~l~~al~~~~~ 359 (361)
T TIGR01366 331 ------RNQLRVAMFPAIDPDDVEALTECVDWVVE 359 (361)
T ss_pred ------CCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence 25799999999999999999999999754
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=240.21 Aligned_cols=339 Identities=13% Similarity=0.073 Sum_probs=230.4
Q ss_pred ccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~ 148 (815)
..+..+.+.+++.++.. .+++|++. ..........+.++++.+++++|+ ++ +++|+|+|+++.+++.++. ++
T Consensus 10 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~--i~~~~g~t~al~~~l~~~~-~~ 82 (361)
T cd06452 10 GGRLTPEARKALIEWGD--GYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DE--ARVTPGAREGKFAVMHSLC-EK 82 (361)
T ss_pred CCCCCHHHHHHHHHHhc--ccCCccccccccccccCchHHHHHHHHHHHcCC--ce--EEEeCCHHHHHHHHHHHhc-CC
Confidence 34566777777766542 24666542 222222233488999999999998 33 9999999999999999997 89
Q ss_pred Cc-EEEecCCCcchhhHHHHhhccc----eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH
Q psy16512 149 GS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221 (815)
Q Consensus 149 gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~ 221 (815)
|| |+++...|.+.+.. +...| .++.+.++ .++++.+++++....+...+++++|++++++|+||.+.|++
T Consensus 83 gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~ 159 (361)
T cd06452 83 GDWVVVDGLAHYTSYVA---AERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAK 159 (361)
T ss_pred CCEEEEcCCcchHHHHH---HHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHH
Confidence 99 88877888777543 33444 55665543 56777777655311001113689999999999999999999
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
+|.++|+ ++|+++++|++++.|..+++...++.|+++.|+||+++.|.++|++++++++++.+......
T Consensus 160 ~i~~~~~-----------~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~ 228 (361)
T cd06452 160 KIAKVCH-----------EYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQM 228 (361)
T ss_pred HHHHHHH-----------HcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccc
Confidence 9999999 89999999999999887787777889999999999998677799999998887765432211
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY 381 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~ 381 (815)
.+.. ...+..++.+...++++.++++.+...-....+..+.++++.+.|+++ ++++++
T Consensus 229 ~~~~----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~l------~g~~v~ 286 (361)
T cd06452 229 FKIK----------------EVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWFVAELEKI------EGIKQL 286 (361)
T ss_pred cccc----------------eeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEE
Confidence 1100 001223455555565666666554332222244455668899999988 788887
Q ss_pred CCCCCCCCCcccceEEEEEecCC----CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKD----GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~----~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
.+.. ...+++.++..... .......++.+.|.++||.+... |
T Consensus 287 ~~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~------------~----------------- 332 (361)
T cd06452 287 GEKP-----KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKP------------G----------------- 332 (361)
T ss_pred CCCC-----CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcC------------C-----------------
Confidence 5321 24677777764210 00001114778888889984210 0
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
. .+++|++... .+++|+++++++|+++.
T Consensus 333 --------~-~~~~ri~~~g-~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 --------L-TRYFKLSTYG-LTWEQVEYVVDAFKEIA 360 (361)
T ss_pred --------C-ceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence 1 2689999832 48999999999998753
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=242.79 Aligned_cols=326 Identities=14% Similarity=0.019 Sum_probs=230.4
Q ss_pred hhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al 144 (815)
|+.. .+++.+.+.+++.+++.. ..+++......... .+++++++++++|++++. +++++|+++++..++.++
T Consensus 25 ~~~~-~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~~--~~~~~ggt~a~~~a~~~~ 96 (371)
T PRK13520 25 LSSM-CTEPHPIARKAHEMFLET-NLGDPGLFPGTAKL----EEEAVEMLGELLHLPDAY--GYITSGGTEANIQAVRAA 96 (371)
T ss_pred eeee-ecCchHHHHHHHHHHHhc-CCCCcccCccHHHH----HHHHHHHHHHHhCCCCCC--eEEecCcHHHHHHHHHHH
Confidence 4443 345566677777766653 34455433333333 689999999999997765 899999999999888776
Q ss_pred cc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 145 EF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 145 ~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
.. ++++ +|++..+|+++.... +..| .++.+.++.++++.+++++ ++++++|++++++|+||.
T Consensus 97 ~~~~~~~~~~vl~~~~~h~s~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~vi~~~~~~~tG~ 166 (371)
T PRK13520 97 RNLAKAEKPNIVVPESAHFSFDKAA---DMLGVELRRAPLDDDYRVDVKAVEDLI-------DDNTIGIVGIAGTTELGQ 166 (371)
T ss_pred HhhccCCCceEEecCcchHHHHHHH---HHcCceEEEecCCCCCcCCHHHHHHHH-------hhCCEEEEEEcCCcCCcc
Confidence 41 2466 888888898754433 3344 5556555567777777644 356778888889999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-------CCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
+.|+++|.++|+ ++|+++++|++|+.+..+ +++...++|++++|+|||.+.|.++|++++++
T Consensus 167 ~~~l~~I~~l~~-----------~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~ 235 (371)
T PRK13520 167 VDPIPELSKIAL-----------ENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRD 235 (371)
T ss_pred cCCHHHHHHHHH-----------HcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcC
Confidence 999999999999 899999999999865422 34444578999999999877566788888765
Q ss_pred c-cccccCcc--cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHH
Q psy16512 290 K-SAHVLNKT--FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYF 364 (815)
Q Consensus 290 ~-~~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~ 364 (815)
+ .++.+... +..++ ......||++...++++.++++.+...+. ..++..++++++.+
T Consensus 236 ~~~~~~l~~~~~~~~~~------------------~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~ 297 (371)
T PRK13520 236 ESYLDALAVDTPYLTSK------------------KQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAE 297 (371)
T ss_pred HHHHHhhcccCccccCC------------------CCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHH
Confidence 4 44433210 10000 01123467777788888888887755443 22889999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|+++ +++++.+. ..+++.+.++ + ..++.+.|.++||.++.+.
T Consensus 298 ~L~~~-------g~~~~~~~-------~~~~v~~~~~--~-----~~~v~~~L~~~gi~v~~~~---------------- 340 (371)
T PRK13520 298 ELKER-------GFEPVIEP-------VLNIVAFDDP--N-----PDEVREKLRERGWRVSVTR---------------- 340 (371)
T ss_pred HHHhC-------CCEEecCC-------CceEEEEecC--C-----HHHHHHHHHHCCceeccCC----------------
Confidence 99886 56633222 2567777765 2 2358888888899987531
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++.++|++||++++++|++++.
T Consensus 341 ----------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 ----------------------CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred ----------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 026799999999999999999999998653
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=232.00 Aligned_cols=307 Identities=13% Similarity=0.073 Sum_probs=209.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc--hhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV--DDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~--~~~~ 182 (815)
+.++++.+|+++|++. +.+++|+++++..++.++. ++|| |+++..+|.+.+...+..+... .++.+. +..+
T Consensus 53 ~~~~~e~lA~~~g~~~----~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~ 127 (370)
T TIGR02539 53 IHDFLEDLAEFLGMDE----ARVTHGAREGKFAVMHALC-KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKV 127 (370)
T ss_pred HHHHHHHHHHHhCCCc----eEEECChHHHHHHHHHHhh-CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCc
Confidence 7788999999999975 5668999999999999997 8999 7777788887764333222111 445432 2446
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.++++++.......+++++|++++++|++|.+.|+++|.++|+ ++|+++++|++|+.|..+.+...
T Consensus 128 d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~-----------~~~~~livDea~~~g~~~~~~~~ 196 (370)
T TIGR02539 128 DPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCR-----------EKGVPLLLNCAYTVGRMPVSAKE 196 (370)
T ss_pred CHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHH-----------HcCCeEEEECccccCCcCCCHHH
Confidence 7777776553111001135889999999999999999999999999 89999999999999876666666
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
+++|+++.|+||+++.+.++|++++++++++.++.....+.... ..+..++....+..++.+++
T Consensus 197 ~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~al 260 (370)
T TIGR02539 197 IGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKE----------------VELLGCTSRGAPIVTMMASF 260 (370)
T ss_pred cCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccce----------------eeeecccccccHHHHHHHHH
Confidence 78999999999999944458999999988876654321111100 01122333334555555566
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC----CCccCHHHHHHhhh
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD----GTYYGYSEVQNLAN 418 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~----~~~~~~~~v~~~l~ 418 (815)
+.....-....+..+.++++++.|+++ +++++... +..++++.++++... +..-....+.+.|.
T Consensus 261 ~~~~~~l~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-----~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~ 328 (370)
T TIGR02539 261 PHVVERVKRWDEEVKKTRWFVAELEDI-------GFIQLGQK-----PKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK 328 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CcEEEccC-----CCcCceEEEECCchhHHhhhhccccHHHHHHHH
Confidence 543322122234445567899999987 67775332 123788888765321 00001234788888
Q ss_pred cCCcE-eccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 419 LKKIQ-LRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 419 ~~gI~-v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++||. ++.|. .+++|+|+. ..+++|+++++++|++++.+
T Consensus 329 e~GI~~ir~~~---------------------------------------~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 329 KRGIHGIRSGQ---------------------------------------TKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred hCCCccccCCc---------------------------------------ceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 99996 44210 268999983 35999999999999987653
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=233.29 Aligned_cols=314 Identities=12% Similarity=0.022 Sum_probs=217.4
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-----CCC
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-----NEG 149 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-----~~g 149 (815)
+.+.+++...+.. ..+++......... .+++++.+++++|+++++ +++++|+++++..++.++.. .+|
T Consensus 34 ~~~~~a~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~g 106 (373)
T TIGR03812 34 PIAVKAYDMFIET-NLGDPGLFPGTKKI----EEEVVGSLGNLLHLPDAY--GYIVSGGTEANIQAVRAAKNLAREEKRT 106 (373)
T ss_pred HHHHHHHHHHhhc-CCCCcccCccHHHH----HHHHHHHHHHHhCCCCCC--eEEeccHHHHHHHHHHHHHHHHhccCCC
Confidence 3445555544332 23444422223333 789999999999998766 88899999999887766531 366
Q ss_pred c-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~ 224 (815)
+ |+++..+|+++... ++..| .++.+.+...+++++++++ .+++..+++.+++|+||.+.|+++|.
T Consensus 107 ~~vl~~~~~h~~~~~~---~~~~G~~~~~v~~~~~~~~d~~~l~~~l-------~~~~~~vv~~~~~~~tG~~~~~~~i~ 176 (373)
T TIGR03812 107 PNIIVPESAHFSFEKA---AEMLGLELRYAPLDEDYTVDVKDVEDLI-------DDNTIGIVGIAGTTELGQIDDIEELS 176 (373)
T ss_pred cEEEECCcchHHHHHH---HHHcCCeEEEEeeCCCCCcCHHHHHHHH-------hhCcEEEEEECCCCCCCccCCHHHHH
Confidence 7 88888888775443 34445 5566655556777776644 24555445555789999999999999
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCCC----------CCCCCCCCCcEEEEccccccccCCcceEEEE-eccccc
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----------MLDLKQHQPDFISISFYKMFGYPTGLGALIV-KQKSAH 293 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----------~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~-~~~~~~ 293 (815)
++|+ ++|+++++|++|+.+.. .+++...+.|++++|+|||+.+|.+.|++++ +++.++
T Consensus 177 ~l~~-----------~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~ 245 (373)
T TIGR03812 177 KIAL-----------ENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK 245 (373)
T ss_pred HHHH-----------HcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh
Confidence 9999 89999999999875432 3455445789999999997665767776665 555554
Q ss_pred ccCc--ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhc
Q psy16512 294 VLNK--TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 294 ~l~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l 369 (815)
.+.. .+.... ......||++...++++.++++.+.+.+.. .++..++++++++.|+++
T Consensus 246 ~l~~~~~~~~~~------------------~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~ 307 (373)
T TIGR03812 246 YLSVDAPYLTVK------------------KQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKI 307 (373)
T ss_pred hhcccCcccCCC------------------CCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4421 010000 011234788888899999999887655432 299999999999999987
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+...++.+ ..+++.|.+++. .++.+.|.++||.++.+.
T Consensus 308 ------g~~~~~~~--------~~~~v~~~~~~~-------~~v~~~L~~~gi~v~~~~--------------------- 345 (373)
T TIGR03812 308 ------GFEPVIEP--------VLNIVAFEVDDP-------EEVRKKLRDRGWYVSVTR--------------------- 345 (373)
T ss_pred ------CCeEEcCC--------CceEEEEEeCCH-------HHHHHHHHHCCceeccCC---------------------
Confidence 33334432 257888876531 247888888899986431
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
..+++|+|++.++|++|+++++++|++
T Consensus 346 -----------------~~~~iRis~~~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 346 -----------------CPKALRIVVMPHVTREHIEEFLEDLKE 372 (373)
T ss_pred -----------------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence 026899999999999999999999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=227.02 Aligned_cols=322 Identities=12% Similarity=0.047 Sum_probs=230.5
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NE 148 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~ 148 (815)
+......+++++.+.+. ..++||.+.+.....+....+++++++++++|++++++..+||+|+|+|+..++.+... .+
T Consensus 32 ~~~~~~~~~~~~~~~~~-~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~ 110 (374)
T PLN03032 32 NLDFDYGELSQLMKYSI-NNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFP 110 (374)
T ss_pred hhccChHHHHHHHHhcc-cCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCC
Confidence 33344456777766544 45789998864333333348999999999999988773349999999999988876542 23
Q ss_pred C-cEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHH
Q psy16512 149 G-SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226 (815)
Q Consensus 149 g-dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l 226 (815)
+ .++++..+|+|+....+..+... .++++.++.++++.++++|. + ...+|.+|++++.+|++|.+.|+++|+++
T Consensus 111 ~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~---~-~~~~~~lvv~tagtt~tG~idpi~eI~~i 186 (374)
T PLN03032 111 DGILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALA---K-NRDKPAILNVNIGTTVKGAVDDLDRILRI 186 (374)
T ss_pred CcEEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHH---H-cCCCCEEEEEEecCcCCccCCCHHHHHHH
Confidence 3 48889999999987766665434 78899889999999988664 1 11257899999999999999999999999
Q ss_pred hhccccccccccCCCC-----eEEEEecccccCCCCC-------CCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 227 HRNHVFKKHFKCSRSN-----CFVLLDAATYCGSNML-------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~g-----i~vivD~a~~~g~~~~-------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|+ ++| +|+|||++++.+..++ ++. .++|.+++|+||++|.|.|+|+++++++.++.
T Consensus 187 ~~-----------~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~ 254 (374)
T PLN03032 187 LK-----------ELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKA 254 (374)
T ss_pred HH-----------HhCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHh
Confidence 99 664 6999999998887764 443 36899999999999999999999999876543
Q ss_pred cC--cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhcc
Q psy16512 295 LN--KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 295 l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~ 370 (815)
+. ..|+.. . ..-..|+.+....+++..++..+...+.. + ++..++++++.+.|++.
T Consensus 255 ~~~~~~Yl~~---------~----------d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~- 314 (374)
T PLN03032 255 LSQNVEYLNS---------R----------DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA- 314 (374)
T ss_pred hccCCcccCC---------C----------CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 32 111110 0 01124566656666666777766544322 2 99999999999999886
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+++++..+. .+++.|.-+..+ .+. +|..+.+-
T Consensus 315 ------~~~~~~~p~-------~~~V~f~~~~~~-----------~~~-~~w~l~~~----------------------- 346 (374)
T PLN03032 315 ------GLTCRLNEL-------SSTVVFERPMDE-----------AFI-KKWQLACE----------------------- 346 (374)
T ss_pred ------CCcEEECCC-------ceEEEEcCCCcH-----------hHh-heeeeccc-----------------------
Confidence 555543322 567777654211 111 35554320
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+|+.+....+.+.+|.|++.|++
T Consensus 347 -----------------~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 347 -----------------GDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred -----------------CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 15799999988899999999998875
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=231.52 Aligned_cols=281 Identities=15% Similarity=0.076 Sum_probs=200.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC-----------CC--c-EEEecCCCcchhhHHHHhhccc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-----------EG--S-FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~-----------~g--d-vv~~~~~h~s~~~~~~~~~~~g 172 (815)
.+++++++++++|.+.....++||+|+|+|+.+++.++... ++ . ++++..+|+++.......+...
T Consensus 40 e~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~ 119 (345)
T cd06450 40 EAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKV 119 (345)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCe
Confidence 67888999999998622224999999999999999887421 22 3 6677778988766655543333
Q ss_pred -eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 173 -IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 173 -~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
.+++++++.++++.++++++... ....+++++++++++|+||.+.|+++|+++|+ ++|+++++|+++
T Consensus 120 ~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~-----------~~~~~l~vD~a~ 187 (345)
T cd06450 120 RLVPVDEDGRMDPEALEAAIDEDK-AEGLNPIMVVATAGTTDTGAIDPLEEIADLAE-----------KYDLWLHVDAAY 187 (345)
T ss_pred EEeeeCCCCCcCHHHHHHHHHHHH-HCCCCcEEEEEecccCCCCCCCCHHHHHHHHH-----------HhCCeEEEechh
Confidence 66776666778888877654110 11226889999999999999999999999999 899999999999
Q ss_pred ccCCCCCCCCC------CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 252 YCGSNMLDLKQ------HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 252 ~~g~~~~dl~~------~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
+.+..+.+... .++|++++|+||++++|.|+|+++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~------------------------------------- 230 (345)
T cd06450 188 GGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------------------------------------- 230 (345)
T ss_pred hHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-------------------------------------
Confidence 88775443221 26899999999998878888887655
Q ss_pred cCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 326 EDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
++++.++++.+...+. ..++..++++++.+.|+++ ++++++.+. ..+++.|.++..
T Consensus 231 ---------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~-------~~~iv~f~~~~~ 288 (345)
T cd06450 231 ---------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRAD------PGFELLGEP-------NLSLVCFRLKPS 288 (345)
T ss_pred ---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCC-------ceeEEEEEECCc
Confidence 2223344554443332 2288889999999999988 688877543 267889987642
Q ss_pred CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHH
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~e 482 (815)
........++.+.|.++|+.+..+..+. ..+++|+|++.+ +|.+
T Consensus 289 ~~~~~~~~~i~~~L~~~g~~~~~~~~~~-----------------------------------~~~~lRis~~~~~~t~~ 333 (345)
T cd06450 289 VKLDELNYDLSDRLNERGGWHVPATTLG-----------------------------------GPNVLRFVVTNPLTTRD 333 (345)
T ss_pred chhhHHHHHHHHHHHhcCCEEEEeeEEC-----------------------------------CeEEEEEEecCCCCCHH
Confidence 0001223457788888866544332100 137899999987 5999
Q ss_pred HHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQ 493 (815)
Q Consensus 483 di~~lv~~L~~ 493 (815)
|+++++++|++
T Consensus 334 di~~l~~~l~~ 344 (345)
T cd06450 334 DADALLEDIER 344 (345)
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=229.27 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=220.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChh--hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNS--VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~--~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++++.+++.+.+....++++.+.. ..... ..++++.+++++|.+. +++++|+++|+..++.++. ++||
T Consensus 53 ~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~----~~~le~~ia~~~g~~~----~ii~~~~~~a~~~~~~~l~-~~gd 123 (393)
T TIGR01822 53 SHPDLIQAAKDALDEHGFGMSSVRFICGTQDI----HKELEAKIAAFLGTED----TILYASCFDANGGLFETLL-GAED 123 (393)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcccCChHH----HHHHHHHHHHHhCCCc----EEEECchHHHHHHHHHHhC-CCCC
Confidence 3567888887777653345555442 22333 7899999999999842 5666788899999999986 9999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
|+++..+|+++......++..+ +.+. ..+++.++++++... ....+|++|++++++|+||.+.|+++|.++|+
T Consensus 124 ~vi~~~~~~~s~~~~~~~~~~~~-~~~~---~~d~~~l~~~i~~~~-~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~- 197 (393)
T TIGR01822 124 AIISDALNHASIIDGVRLCKAKR-YRYA---NNDMADLEAQLKEAR-AAGARHRLIATDGVFSMDGVIAPLDEICDLAD- 197 (393)
T ss_pred EEEEeccccHHHHHHHHhcCCce-EEeC---CCCHHHHHHHHHhhh-hcCCCceEEEEeCCccCCCCcCCHHHHHHHHH-
Confidence 8888999999877666554444 2221 134455555443110 01127899999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++++|++|+.|.... ++. .++|++++|+||+++++ ..|+++.++++++.+.+...
T Consensus 198 ----------~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~-r~G~~~~~~~~~~~l~~~~~ 265 (393)
T TIGR01822 198 ----------KYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGA-SGGFTTARKEVVELLRQRSR 265 (393)
T ss_pred ----------HcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCC-CcEEEEeCHHHHHHHHHhCc
Confidence 8999999999998765321 121 25799999999999855 46999998887765532110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
.....++.+...+.++.++++.+.......++..++++++.+.|++. ++.+
T Consensus 266 ----------------------~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 316 (393)
T TIGR01822 266 ----------------------PYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAA-------GFDI 316 (393)
T ss_pred ----------------------cceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCCC
Confidence 01123455556666666777766443223388899999999999875 4554
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
..+. ++++.+.+.+. ....++.+.|.++||.+. +..+ +. ..
T Consensus 317 ~~~~--------~~~~~i~~~~~----~~~~~l~~~L~~~gI~v~-~~~~-~~-~~------------------------ 357 (393)
T TIGR01822 317 KPAD--------HPIIPVMLYDA----VLAQRFARRLLEEGIYVT-GFFY-PV-VP------------------------ 357 (393)
T ss_pred CCCC--------CCEEEEEeCCH----HHHHHHHHHHHHCCeeEe-eeCC-CC-CC------------------------
Confidence 4221 45666655431 112357777878899987 3222 10 00
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.....+|+|+++++|++||++++++|++++.
T Consensus 358 -----~~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 388 (393)
T TIGR01822 358 -----KGQARIRVQISAAHTEEQLDRAVEAFTRIGR 388 (393)
T ss_pred -----CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 0124699999999999999999999998754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-23 Score=225.36 Aligned_cols=322 Identities=13% Similarity=0.139 Sum_probs=223.5
Q ss_pred ccchhhHHHHHHHHhhc--cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhh
Q psy16512 72 VYSQSQMNQTIEQLKEN--IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~--~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
..|+.+.+++.+.+... .|. | ... +.++|++|++++ | .++++ +|++|+|+++|+..++.+
T Consensus 41 ~~p~~i~~a~~~a~~~~~~~Y~-~------~~G----~~~LReaia~~~~~~~~~~~~~~~-eiivt~Ga~~al~~~~~a 108 (393)
T COG0436 41 PTPEHIIEAAIEALEEGGTHYT-P------SAG----IPELREAIAEKYKRRYGLDVDPEE-EIIVTAGAKEALFLAFLA 108 (393)
T ss_pred CCCHHHHHHHHHHHhcccCCCC-C------CCC----CHHHHHHHHHHHHHHhCCCCCCCC-eEEEeCCHHHHHHHHHHH
Confidence 34566777776666543 222 2 223 667777777664 3 23322 499999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc---hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV---DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~---~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. ++|| |+++.+.|+++..+..+++... .++++. +...+.+.++++ ++++||++++++||||||.++
T Consensus 109 ~~-~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~-------i~~ktk~i~ln~P~NPTGav~ 180 (393)
T COG0436 109 LL-NPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAA-------ITPKTKAIILNSPNNPTGAVY 180 (393)
T ss_pred hc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhh-------cCccceEEEEeCCCCCcCcCC
Confidence 99 9999 9999999999988888877666 666543 345666666664 457899999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCC----CCcEEEEccccccccCCc--ceEEEEe
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+.+++.++++ +|++|++++|.|.++.- +..+..+... ..-+.+.|+||.|+ ++| +||++++
T Consensus 181 ~~~~l~~i~~--------~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~-mtGwRvG~~v~~ 251 (393)
T COG0436 181 SKEELKAIVE--------LAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG-MTGWRIGWVVGP 251 (393)
T ss_pred CHHHHHHHHH--------HHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccc-ccccceeEeecC
Confidence 9777666655 44599999999987432 2112222222 23477789999999 778 8999999
Q ss_pred -cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh--hhhhH-HHHHHHHHHHHH
Q psy16512 289 -QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK--KRKSF-TNAFELSQYTYF 364 (815)
Q Consensus 289 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~--~~~~~-~~~~~l~~~l~~ 364 (815)
+++++.+.... .....+++.....++.++|+.-.. ....+ +...+.++.+.+
T Consensus 252 ~~~l~~~~~~~~------------------------~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~ 307 (393)
T COG0436 252 PEELIAALRKLK------------------------SYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVE 307 (393)
T ss_pred hHHHHHHHHHHH------------------------HhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 65655442111 112235566777777777765422 22222 678899999999
Q ss_pred HHHhccccCCCCcEEEcC-CCCCCCCCcccceEEEEEecC-CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 365 YFKQLSYSNGQPLVELYH-DTDYGESKYQGNIVNFNLLHK-DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~-~~~~~~~~~~~~i~~f~~~~~-~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
.|.++ +++.+.. |.+ +.++...++.. +.. ....++|++.||.+.+|..+...
T Consensus 308 ~l~~~------~g~~~~~~p~G-------a~Y~~~~i~~~~d~~----~f~~~Ll~~~gV~v~PG~~Fg~~--------- 361 (393)
T COG0436 308 ALNEI------GGLSVVKPPEG-------AFYLFPKIPELLDSE----EFAKKLLEEAGVAVVPGSGFGEP--------- 361 (393)
T ss_pred HHHhc------CCeeeccCCCe-------eEEEEeecCCCCCHH----HHHHHHHHhCCEEEecccccCCC---------
Confidence 99988 6788887 433 45555555542 222 23667779999999999765431
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|+|+.. +.++++..++.|.+++..
T Consensus 362 -----------------------~g~~~vRis~~~--~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 362 -----------------------PGEGYVRLSLAT--SEETLEEALRRLARFLAE 391 (393)
T ss_pred -----------------------CCCCeEEEEEec--CHHHHHHHHHHHHHHHHh
Confidence 114899999984 558999999999887653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=225.55 Aligned_cols=315 Identities=15% Similarity=0.121 Sum_probs=211.4
Q ss_pred hhhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
+.+.|+.+.... +++.+.+++........|.++. ..++|+++++++|+++++ |++|+|+++++.+
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~~~~~Yp~~~------------~~~lr~~ia~~~~~~~~~--I~~t~Ga~~~i~~ 118 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMKFPYVYPDPE------------SRRLRAALAEDSGLESEN--ILVGCGADELIDL 118 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhHhhccCCCCC------------HHHHHHHHHHHhCcChhh--EEEcCCHHHHHHH
Confidence 456677765443 4555666553311111222222 668999999999999887 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.++. ++|| |+++.+.|+.+. ..+...| .++.+.+...+++.+++++. .+++++|++++|+|||
T Consensus 119 ~~~~~~-~~gd~Vlv~~P~y~~y~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~------~~~~~~v~l~~P~NPT 188 (380)
T PLN03026 119 LMRCVL-DPGDKIIDCPPTFGMYV---FDAAVNGAEVIKVPRTPDFSLDVPRIVEAVE------THKPKLLFLTSPNNPD 188 (380)
T ss_pred HHHHhc-CCCCEEEEcCCChHHHH---HHHHHcCCEEEEeecCCCCCcCHHHHHHHHh------ccCCcEEEEeCCCCCC
Confidence 999987 8999 888887765443 3333344 44454444556666655331 4679999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCC-CCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
|..+|.+++.++++ .. +++++|+++.--. .... +...+..+++.||+|.|| ++| +||++.+
T Consensus 189 G~~~~~~~l~~l~~-----------~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~g-laGlRiGy~~~~ 255 (380)
T PLN03026 189 GSIISDDDLLKILE-----------LP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAG-LAGLRVGYGAFP 255 (380)
T ss_pred CCCCCHHHHHHHHh-----------cC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhc-CccccceeeecC
Confidence 99999999999998 44 8999999864211 1111 122345688899999999 668 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.... ...+.+.++..++.++++.........+++.+.++++.+.|++
T Consensus 256 ~~~i~~l~~~~--------------------------~~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~ 309 (380)
T PLN03026 256 LSIIEYLWRAK--------------------------QPYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKE 309 (380)
T ss_pred HHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766543211 1123455566666666643221111226677778888889988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +++.+. +. .++++.+.++.. .+..++.+.|.++||.++.+.. .
T Consensus 310 ~------~~~~~~-p~-------~~~f~~~~~~~~----~~~~~~~~~l~~~gI~v~~~~~---~--------------- 353 (380)
T PLN03026 310 V------PFLEPY-PS-------DANFILCRVTSG----RDAKKLKEDLAKMGVMVRHYNS---K--------------- 353 (380)
T ss_pred C------CCCeEC-CC-------CCeEEEEECCCC----CCHHHHHHHHHHCCeEEEECCC---C---------------
Confidence 7 445543 32 267878876531 1223577788899999986522 0
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+ ..+++|||++ +.+++++++++|+++
T Consensus 354 ----------------~-~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 354 ----------------E-LKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred ----------------C-CCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 0 1378999998 788999999999874
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=218.24 Aligned_cols=321 Identities=17% Similarity=0.198 Sum_probs=226.0
Q ss_pred hhhhhhhhcccccc-hhhHHHHHHHHh-hccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-CCCCceeEEecCCchhhH
Q psy16512 61 DICYLDYTGAGVYS-QSQMNQTIEQLK-ENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-TDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 61 ~~iyLd~a~~~~~p-~~v~~al~~~l~-~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-~~~~~~~iv~t~g~t~al 137 (815)
+.+.|+.+.+...| +.+.+++.+.+. ...|.++. ..++++.+++++| .++++ |+.++|+++.|
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~~------------~~~l~~a~a~~~~~~~~~~--V~~gnGsde~i 88 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDPD------------YRELRAALAEYYGVVDPEN--VLVGNGSDELI 88 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCCc------------HHHHHHHHHHHhCCCCcce--EEEcCChHHHH
Confidence 34556666666544 555555554443 23344443 7889999999999 77776 99999999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
..+++++. .+|| ++++.++|..+....+..+... .++..+ ...+.+.+..++ .+++++|++++||||||
T Consensus 89 ~~l~~~~~-~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~-------~~~~~lv~i~nPNNPTG 159 (356)
T COG0079 89 ELLVRAFV-EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAI-------RDKTKLVFLCNPNNPTG 159 (356)
T ss_pred HHHHHHhh-cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhh-------hcCCCEEEEeCCCCCCC
Confidence 99999999 9998 8888866655543333332222 445544 445555555433 34799999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEecccc--cCCCCCCCCCCCC-cEEEEccccccccCCc--ceEEEEecc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY--CGSNMLDLKQHQP-DFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~--~g~~~~dl~~~~~-D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
...+.++|.+++.. +.+ +.+|+||+|+. .+...+.+..... -+++.||+|.|| .+| +||++.+++
T Consensus 160 ~~~~~~~l~~l~~~--------~~~-~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~g-LAGlRlGy~ia~~~ 229 (356)
T COG0079 160 TLLPREELRALLEA--------LPE-GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFG-LAGLRVGYAIANPE 229 (356)
T ss_pred CCCCHHHHHHHHHh--------CCC-CcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhh-cchhceeeccCCHH
Confidence 99999999999882 224 88999999854 2311222222233 467779999999 668 899999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.+.+. ..+++.|.++..++.++++.-.......+++...++++.+.|+.+
T Consensus 230 ~i~~l~~v--------------------------r~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~~- 282 (356)
T COG0079 230 LIAALNKV--------------------------RPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKAL- 282 (356)
T ss_pred HHHHHHHh--------------------------cCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 88766332 224467778888877777665444334488899999999999998
Q ss_pred ccCCCCcEE-EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVE-LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~-l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+ +. ++.. .++++.+++++.. ...+.+.|.++||.+|.... .
T Consensus 283 -----~-~~~v~pS--------~aNFvlv~~~~~~-----~~~l~~~L~~~giivR~~~~--~----------------- 324 (356)
T COG0079 283 -----G-LFGVFPS--------QANFVLVRVPDAE-----AAALAEALLKKGILVRDCSS--V----------------- 324 (356)
T ss_pred -----C-CCeecCC--------CCcEEEEECCCcc-----HHHHHHHHHHCCEEEEeCCC--C-----------------
Confidence 3 44 4422 2788888877522 12488999999999996421 1
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+...+++||++| |+++.++++++|++++..
T Consensus 325 ---------------~~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 325 ---------------GLLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred ---------------CCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 122479999999 899999999999997654
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=222.92 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=211.5
Q ss_pred cchhhhhhhhcccc-cchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 59 LKDICYLDYTGAGV-YSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 59 ~~~~iyLd~a~~~~-~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
.++.++|+.+.... +++.+.+++.+.... ..|..+ . ..++|+.|++++|+++++ |++|+|++++
T Consensus 42 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~--------~----~~~Lr~aia~~~~v~~e~--I~it~Gs~~a 107 (370)
T PRK09105 42 AEGAVFLNANECPLGPSPAARDAAARSAALSGRYDLE--------L----EDDLRTLFAAQEGLPADH--VMAYAGSSEP 107 (370)
T ss_pred CCCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc--------h----HHHHHHHHHHHhCcChhh--EEEcCChHHH
Confidence 34567888777654 567777777665432 112111 1 668999999999999987 9999999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+.+++.++. ++|| |+++.++|+.+....+..+... .++.+.+...+++.+++ . .++++++++++|+|||
T Consensus 108 i~~~~~~l~-~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-------~-~~~~~~v~l~nP~NPT 178 (370)
T PRK09105 108 LNYAVLAFT-SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLA-------A-DPNAGLIYICNPNNPT 178 (370)
T ss_pred HHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHh-------c-CCCCCEEEEeCCCCCC
Confidence 999999998 8899 8888887776655444332222 44555444455555443 2 3568999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccC-CCC--CCCCCCCCc-EEEEccccccccCCc--ceEEEEe
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SNM--LDLKQHQPD-FISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~~--~dl~~~~~D-~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
|.++|.++|.++++. | ++++++|+|+++..- ..+ .++.....+ +++.||+|.|| ++| +||++.+
T Consensus 179 G~~~~~~~l~~l~~~--------~-~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g-~~GlRiG~~v~~ 248 (370)
T PRK09105 179 GTVTPRADIEWLLAN--------K-PAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYG-MAGMRLGLAAAR 248 (370)
T ss_pred CcCcCHHHHHHHHHh--------C-CCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhc-CCccceeeeecC
Confidence 999999999998871 1 458999999987321 111 122122334 56679999999 668 8999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.+. ...+.+.....++..++..........++..+.++++.+.|++
T Consensus 249 ~~~i~~l~~~---------------------------~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 301 (370)
T PRK09105 249 PDLLAKLARF---------------------------GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK 301 (370)
T ss_pred HHHHHHHHhc---------------------------CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877655322 0112444444454455543221111226778888889999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++.++.+. ++++.+.++ . +..++.+.|.++||.++.+ +.
T Consensus 302 ~-------g~~~~~~~--------~~f~~~~~~-~-----~~~~l~~~L~~~gI~v~~~--~~----------------- 341 (370)
T PRK09105 302 K-------GYKCTPSQ--------ANCFMVDVK-R-----PAKAVADAMAKQGVFIGRS--WP----------------- 341 (370)
T ss_pred C-------CCCcCCCC--------CcEEEEeCC-C-----CHHHHHHHHHHCCcEEecC--CC-----------------
Confidence 6 55555432 555555543 1 2235777777889998422 21
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+. .+++|++++ +.+++++++++|++++
T Consensus 342 ----------------~~-~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 342 ----------------IW-PNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred ----------------CC-CCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 00 378999998 6899999999998865
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=223.42 Aligned_cols=321 Identities=16% Similarity=0.168 Sum_probs=215.3
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCC----h-hh----hhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG----N-SV----LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s----~-~~----~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
..-||++...+.+.+++.+++.+...+. |++ . .. .... ++++++.+++++|++. . ++|++
T Consensus 11 s~~YL~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~gs~~~~g~~~~----~~~~e~~la~~~~~~~-~--l~~~s 79 (370)
T PRK05937 11 TNDFLGFSRSDTLVHEVEKRYRLYCRQF----PHAQLGYGGSRAILGPSSL----LDDLEHKIAHFHGAPE-A--FIVPS 79 (370)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHhcccc----CCCCCCCCCcCcccCChHH----HHHHHHHHHHHhCCCe-E--EEECC
Confidence 3468999888888788777776543221 332 1 22 3344 8999999999999854 2 77777
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
|++ |+..++..+. ++|| +++...+|+++........ + .+... ..+++.++++|+... ...+++.+|++++
T Consensus 80 G~~-a~~~~~~~~~-~~~d~ii~d~~~H~sv~~~~~~~~--~~~~~~~---~~d~~~l~~~l~~~~-~~~~~~~~v~v~~ 151 (370)
T PRK05937 80 GYM-ANLGLCAHLS-SVTDYVLWDEQVHISVVYSLSVIS--GWHQSFR---HNDLDHLESLLESCR-QRSFGRIFIFVCS 151 (370)
T ss_pred hHH-HHHHHHHHhC-CCCCEEEEEhhhhHHHHHHHHHcC--CceEEec---CCCHHHHHHHHHhhh-ccCCCcEEEEEec
Confidence 764 6655555554 6788 6666889999887655532 3 23332 234455555443111 0113467888999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC----CCC---CcEEEEccccccccCCcc
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK----QHQ---PDFISISFYKMFGYPTGL 282 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~----~~~---~D~vv~S~~K~~g~p~G~ 282 (815)
++|++|.+.|+++|.++|+ ++|+++++|++|+.|..+.+.. .++ .++++.|++|++| |.|.
T Consensus 152 v~s~~G~i~pl~eI~~l~~-----------~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~ 219 (370)
T PRK05937 152 VYSFKGTLAPLEQIIALSK-----------KYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGA 219 (370)
T ss_pred CCCCCCCccCHHHHHHHHH-----------HcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCce
Confidence 9999999999999999999 8999999999999988776653 222 2366789999999 8888
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQY 361 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~ 361 (815)
|+++. ++..+.+.... .+.++.. +.+.+.++++.++++++...+... +++.+++++
T Consensus 220 ~vl~~-~~~~~~~~~~~---------------------~~~~~s~-~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~ 276 (370)
T PRK05937 220 ALLSS-SEVKQDLMLNS---------------------PPLRYST-GLPPHLLISIQVAYDFLSQEGELARKQLFRLKEY 276 (370)
T ss_pred EEEcC-HHHHHHHHHhC---------------------CCCeecC-CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 87665 33322221000 0112333 356667888889999987765433 778888888
Q ss_pred HHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCC
Q psy16512 362 TYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
+.+.|... . + +.+..+.+++.. ...+.+.|.++||.++. +|.+.
T Consensus 277 l~~~l~~~-------~-----~---------~~~~~i~~~~~~-----~~~~~~~L~~~gi~v~~--~~~~~-------- 320 (370)
T PRK05937 277 FAQKFSSA-------A-----P---------GCVQPIFLPGIS-----EQELYSKLVETGIRVGV--VCFPT-------- 320 (370)
T ss_pred HHHhcCCC-------C-----C---------CCEEEEEeCChh-----HHHHHHHHHHCCeeEEe--eCCCC--------
Confidence 87766432 0 0 112234444322 23578888999998864 33220
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.||+|++.++|++||++++++|++++.+
T Consensus 321 --------------------------~~~iRis~~~~~t~edid~l~~~L~~~~~~ 350 (370)
T PRK05937 321 --------------------------GPFLRVNLHAFNTEDEVDILVSVLATYLEK 350 (370)
T ss_pred --------------------------CCEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999998754
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=227.35 Aligned_cols=310 Identities=11% Similarity=0.019 Sum_probs=199.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC--Cc-EEEecCCCcchhhHHHHhh-ccc----eEEcCc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE--GS-FIYLTDNHTSVLGMRELVK-TNQ----IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~--gd-vv~~~~~h~s~~~~~~~~~-~~g----~v~~~~ 178 (815)
.+++++++++++|++.++ +++++|++.+...++.++...+ || |+++...|+++......+. ..| .++.+.
T Consensus 66 ~~~~~~~la~~~g~~~~~--v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~ 143 (398)
T cd00613 66 LFELQTMLCELTGMDVAN--ASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE 143 (398)
T ss_pred HHHHHHHHHHHHCCCccc--eeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC
Confidence 788999999999997665 7777766655444433333255 88 8888899999877655554 233 445544
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh-HHHHHHhhccccccccccCCCCeEEEEecccccCCCC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL-SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM 257 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l-~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~ 257 (815)
+...+++.+++ .++++|++|++++++ ++|.+.|. ++|+++|+ ++|+++|+|++|+.+..+
T Consensus 144 ~~~~d~~~l~~-------~i~~~t~~viv~~~~-~~G~~~~~l~~i~~la~-----------~~g~~livD~~~~~~~~~ 204 (398)
T cd00613 144 GGTVDLEALKE-------EVSEEVAALMVQYPN-TLGVFEDLIKEIADIAH-----------SAGALVYVDGDNLNLTGL 204 (398)
T ss_pred CCCcCHHHHHH-------hcCCCeEEEEEECCC-CCceecchHHHHHHHHH-----------hcCCEEEEEeccccccCC
Confidence 44456666555 345779999999985 89999985 99999999 899999999998876666
Q ss_pred CCCCCCCCcEEEEccccccccC-----CcceEEEEecccccccCcccccCceEEEEecCCcccc--cccCccccccCCCC
Q psy16512 258 LDLKQHQPDFISISFYKMFGYP-----TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI--KKDGLFEKFEDGTV 330 (815)
Q Consensus 258 ~dl~~~~~D~vv~S~~K~~g~p-----~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~gt~ 330 (815)
.+...+++|++++|+|||++ | +|+|++++++++++.+.+...++.... .....+.. .......+++.++.
T Consensus 205 ~~~~~~~~d~~~~s~~K~~~-p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~r~e~~~~ 281 (398)
T cd00613 205 KPPGEYGADIVVGNLQKTGV-PHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDA--EGNRAFRLALQTREQHIRREKATS 281 (398)
T ss_pred CChHHcCCCEEEeeccccCC-CCCCCCCceeEEEEhhhhHhhCCCCeecccccc--CCCcceEEecccchhhcccccccc
Confidence 66667789999999999983 5 358899999888776644433332211 00001110 00001123445554
Q ss_pred Chh-----HHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 331 NYL-----AIISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 331 ~~~-----~~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
++. ...++..++..+...+.. + ++..++++++.+.|+++ ++... +.. ...+++.|.++..
T Consensus 282 ~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~~~~~--~~~-----~~~~~v~~~~~~~ 348 (398)
T cd00613 282 NICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEV------GGVLP--FNG-----PFFHEFVLRLPPL 348 (398)
T ss_pred cceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhc------CCccc--CCC-----CeeEEEEEEcCCc
Confidence 432 222333334443333322 2 88999999999999987 33321 111 1234556665431
Q ss_pred CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
.+ .+..++.+.|.++||.+.... + ...+.||+|++.++|++|
T Consensus 349 ~~--~~~~~~~~~L~~~gi~~~~~~---~---------------------------------~~~~~lRis~~~~~t~ed 390 (398)
T cd00613 349 YG--IRAEDLAKALIDGGFHAPTMY---L---------------------------------PVDGTLMIEPTETETKEE 390 (398)
T ss_pred ch--HHHHHHHHhhhhcCccccccc---c---------------------------------CCCCeEEEEcCCCCCHHH
Confidence 01 123457788888898753210 0 003789999999999999
Q ss_pred HHHHHHHH
Q psy16512 484 VKYFLSFL 491 (815)
Q Consensus 484 i~~lv~~L 491 (815)
||+++++|
T Consensus 391 id~~~~~L 398 (398)
T cd00613 391 LDALLEAL 398 (398)
T ss_pred HHHHHHhC
Confidence 99999874
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=201.17 Aligned_cols=370 Identities=14% Similarity=0.083 Sum_probs=264.0
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
.|....+.+||+-++-+..|+.+..+.++...+.+...-.+. ..+..-+...-+.+-.+++.++|+.+++ ++.+.+.
T Consensus 25 ~f~lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~E--vvv~dtt 102 (407)
T COG3844 25 RFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGE--VVVTDTT 102 (407)
T ss_pred hccCCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCc--eEEeCCc
Confidence 445556789999999888887766665554433221111111 1111112233678889999999999988 9998888
Q ss_pred hhhHHHHHhhh-ccCCCc-EEEec-CCCcchhh-HHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 134 TSAIKTVSEYF-EFNEGS-FIYLT-DNHTSVLG-MRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 134 t~al~~~~~al-~~~~gd-vv~~~-~~h~s~~~-~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+--+..++.+. ..++|+ +|++. .++|+-+. ....+.-.+ +..+......+.++++ .++..+.+|++++
T Consensus 103 s~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~-~~~~~~~~~~P~~~~~-------~~~dd~AvV~L~~ 174 (407)
T COG3844 103 SINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLG-IGYDLEGVIAPRALEE-------AITDDVAVVLLSH 174 (407)
T ss_pred chHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhc-ccccceeeeChHHHHH-------hhccceEEEEecc
Confidence 77665555544 445677 66654 56777433 222332222 0012222333434444 4457899999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccc-cCCcceEEEEe
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFG-YPTGLGALIVK 288 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g-~p~G~G~l~~~ 288 (815)
++..||.++++.+|..++| ++|++++.|=+|++|..|+++...++||-+.+.||++. +|.+.+++++.
T Consensus 175 V~y~TGql~dm~aiT~~AH-----------~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~ 243 (407)
T COG3844 175 VNYKTGQLLDMRAITALAH-----------QHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVA 243 (407)
T ss_pred ccccccceeeHHHHHHHHH-----------hcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEec
Confidence 9999999999999999999 99999999999999999999999999999999999655 46669999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYF 366 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L 366 (815)
++..+...+...||....-......-+ ..-+.+.+|..||+++.++.++..+|+...+.+... ++...|.+++.+-+
T Consensus 244 ~~h~e~~~~~lsgW~gha~pf~m~~~y-~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLv 322 (407)
T COG3844 244 PRHRERSWPPLSGWWGHARPFAMEEVY-APGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELV 322 (407)
T ss_pred cccccccccccccccCCCCcchhhhcc-CcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHH
Confidence 988877767666665432211111111 113456789999999999999999999988775333 88888999999888
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
...... -++++.+|.. ...+|+-+++..+. +. .+++.|.++||....
T Consensus 323 Ea~~~~---~~l~l~tPr~---~~~rGsqvS~~hp~--~~-----~V~qaLi~rGVigD~-------------------- 369 (407)
T COG3844 323 EARCEY---YGLTLVTPRA---HEERGSQVSLYHPH--GY-----QVMQALIDRGVIGDF-------------------- 369 (407)
T ss_pred Hhcccc---CCcEEeccch---hhhccceeeEecCc--HH-----HHHHHHHHcCccccc--------------------
Confidence 776311 1688888864 45778999998773 22 489999999987532
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHhhc
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~~~ 498 (815)
+.++.+|+.+. +|++.+||...+++|++++...
T Consensus 370 -------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 370 -------------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred -------------------cCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 34689999987 5799999999999999987543
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=223.48 Aligned_cols=319 Identities=15% Similarity=0.174 Sum_probs=213.4
Q ss_pred hhhhhhhhccccc-chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGVY-SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~~-p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
+.++|+.+..... ++.+.+++.+.+.......|+ .. ..++|+.+++++++++++ |++|+|+++++.+
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~------~~----~~~lr~aia~~~~~~~~~--I~it~G~~~al~~ 92 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPD------PN----ADALRQAIAAYYGLDPEQ--VFVGNGSDEVLAH 92 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCC------Cc----HHHHHHHHHHHhCCCHHH--EEEcCCHHHHHHH
Confidence 4567777665543 556666665544321111222 11 568999999999999887 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++.++. ++|| |+++.+.|+.+..+.+..+... .++++.+..++++.+++ .++++++++|+||||.+
T Consensus 93 ~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~-----------~~~~v~~~~P~NPtG~~ 160 (353)
T PRK05387 93 AFLAFF-NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR-----------PNGGIIFPNPNAPTGIA 160 (353)
T ss_pred HHHHhc-CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh-----------cCCEEEEeCCCCCCCCC
Confidence 999998 8999 8888877766555544433222 55665544556655432 36789999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCCC-CCCCCcEEEEccccccccCCc--ceEEEEecccc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQKSA 292 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~ 292 (815)
+|.+++.++++. .+++++++|+++.. +.....+ ...+..+++.|++|.|| .+| +||++.+++.+
T Consensus 161 ~~~~~~~~l~~~----------~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlR~G~~~~~~~~~ 229 (353)
T PRK05387 161 LPLAEIERILAA----------NPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRS-LAGLRVGFAIGHPELI 229 (353)
T ss_pred CCHHHHHHHHHh----------CCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhc-chhhhceeeecCHHHH
Confidence 999999999981 23899999988642 1111111 12345688899999999 557 89999988776
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcccc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.++... ..+..++.+..+..++..++..........++..+.++++.+.|+++
T Consensus 230 ~~l~~~~-----------------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 283 (353)
T PRK05387 230 EALNRVK-----------------------NSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEAL--- 283 (353)
T ss_pred HHHHHhh-----------------------ccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC---
Confidence 6553221 00112355666666666666432212112267778888888988876
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
++.++. . .++++++.+++. +..++.+.|.++||.++. ++.+
T Consensus 284 ----g~~~~~-~-------~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~--~~~~-------------------- 324 (353)
T PRK05387 284 ----GFEVLP-S-------KANFVFARHPSH-----DAAELAAKLRERGIIVRH--FNKP-------------------- 324 (353)
T ss_pred ----CCeECC-C-------cCcEEEEECCCC-----CHHHHHHHHHHCCEEEEE--CCCC--------------------
Confidence 555542 2 256777665532 234577888899999963 1111
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+++|+|++ +.+++++++++|++++
T Consensus 325 -------------~~~~~iRis~~---~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 325 -------------RIDQFLRITIG---TDEEMEALVDALKEIL 351 (353)
T ss_pred -------------CCCCeEEEEeC---CHHHHHHHHHHHHHHh
Confidence 01378999998 6799999999999865
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=222.58 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=207.3
Q ss_pred ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 72 VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
..++.+++++.++... ..|..+. ..++|+.+++++|+++++ |++|+|+++++..++.++. ++||
T Consensus 32 ~~~~~~~~a~~~~~~~~~~y~~~~------------~~~lr~~ia~~~~~~~~~--i~~~~G~~~~l~~~~~~l~-~~gd 96 (346)
T TIGR01141 32 GPPPKAKEALRAEADKLHRYPDPD------------PAELKQALADYYGVDPEQ--ILLGNGSDEIIELLIRAFL-EPGD 96 (346)
T ss_pred CCCHHHHHHHHHhHHHhhcCCCCC------------HHHHHHHHHHHhCcChHH--EEEcCCHHHHHHHHHHHhc-CCCC
Confidence 4567788887765432 1222222 468999999999988876 9999999999999999987 8888
Q ss_pred -EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
|+++..+|+.+. ..+...| .++++.++..+.+.++++ ..+++++|++++++||||..+|++++.+
T Consensus 97 ~v~~~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~d~~~l~~~-------~~~~~~~v~l~~p~NptG~~~~~~~~~~ 166 (346)
T TIGR01141 97 AVLVPPPTYSMYE---ISAKIHGAEVVKVPLDEDGQLDLEDILVA-------IDDKPKLVFLCSPNNPTGNLLSRSDIEA 166 (346)
T ss_pred EEEEcCCCHHHHH---HHHHHcCCeEEEeccCCCCCCCHHHHHHh-------cCCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 888887665433 2334445 455555555666666542 3467999999999999999999999999
Q ss_pred HhhccccccccccCCCCeEEEEecccccCC---CCCCC-CCCCCcEEEEccccccccCCc--ceEEEEecccccccCccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~ 299 (815)
+++ .|+ +++++++|++++.-. .+.+. ...+.++++.|+||+|| ++| +|++++++++++.+++..
T Consensus 167 l~~--------~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~ 236 (346)
T TIGR01141 167 VLE--------RTP-EDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFG-LAGLRIGYAIANAEIIDALNKVR 236 (346)
T ss_pred HHH--------hCC-CCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhh-chhhhceeeecCHHHHHHHHhcc
Confidence 998 222 599999999976211 11111 11233577889999998 446 799999888776554321
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
...+.+.++..++..+++.........++.+++++++.+.|.++ ++++
T Consensus 237 --------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~ 284 (346)
T TIGR01141 237 --------------------------APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKKL------PGLE 284 (346)
T ss_pred --------------------------CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc------CCCE
Confidence 01123444455444444432211112277788888899999877 5777
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
+..+ .++++++.++. + ..++.+.|.++||.+++|..+.
T Consensus 285 ~~~~--------~g~~~~~~~~~-~-----~~~~~~~L~~~gI~v~~g~~f~---------------------------- 322 (346)
T TIGR01141 285 VYPS--------DANFVLIRFPR-D-----ADALFEALLEKGIIVRDLNSYP---------------------------- 322 (346)
T ss_pred ECCC--------cCCEEEEecCC-C-----HHHHHHHHHHCCeEEEeCCCcC----------------------------
Confidence 5532 26788887764 2 2357888888999999875431
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+. .+++|+|++ +++|+++++++|+
T Consensus 323 -----~~-~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 323 -----GL-PNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred -----CC-CCeEEEecC---CHHHHHHHHHHhC
Confidence 11 378999987 7899999999873
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=223.98 Aligned_cols=324 Identities=14% Similarity=0.143 Sum_probs=221.5
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCC--Chhhh-hhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPH--GNSVL-SDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~--s~~~~-~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~ 138 (815)
.-||+.. ..+++.+++.+.+... ..+++ +.... ... ..++++.+++++|.+. +++++|+++|+.
T Consensus 62 ~~YL~l~----~~p~v~~a~~~~~~~~-~~~~~~s~~~~~~~~~----~~~le~~la~~~g~~~----~~~~~sG~~An~ 128 (407)
T PRK07179 62 NDYLNLS----GHPDIIKAQIAALQEE-GDSLVMSAVFLHDDSP----KPQFEKKLAAFTGFES----CLLCQSGWAANV 128 (407)
T ss_pred CCccCCC----CCHHHHHHHHHHHHHh-CCCCCccccccCCchH----HHHHHHHHHHHhCCCc----EEEECCHHHHHH
Confidence 4455554 2466777777766532 33332 22111 123 6788899999999853 688999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
.++.++. .+|+ +++...+|+++.......+.. ..+++. .+++.++++++ ..++++|++++++|+||.+
T Consensus 129 ~~l~~l~-~~g~~v~~~~~~h~s~~~~~~~~g~~-~~~~~~---~d~~~l~~~l~------~~~~~lV~v~~v~n~tG~i 197 (407)
T PRK07179 129 GLLQTIA-DPNTPVYIDFFAHMSLWEGVRAAGAQ-AHPFRH---NDVDHLRRQIE------RHGPGIIVVDSVYSTTGTI 197 (407)
T ss_pred HHHHHhC-CCCCEEEEECCcCHHHHHHHHHCCCe-EEEecC---CCHHHHHHHHH------hcCCeEEEECCCCCCCCcc
Confidence 9999998 7888 777888898886543332111 333322 34555555432 1247899999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
.|+++|.++|+ ++|+++|+|++|+.|... +++. ..+|+++.|+||++| + ++|+++++
T Consensus 198 ~pl~~I~~l~~-----------~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g-~-~~G~l~~~ 263 (407)
T PRK07179 198 APLADIVDIAE-----------EFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFA-G-RAGIITCP 263 (407)
T ss_pred ccHHHHHHHHH-----------HcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhh-c-cCeEEEeC
Confidence 99999999999 899999999999876431 1111 246999999999999 4 37999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+..... .....+|.+...++++.++++.+.......++++++++++.+.|.+
T Consensus 264 ~~~~~~~~~~~~----------------------~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~ 321 (407)
T PRK07179 264 RELAEYVPFVSY----------------------PAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSE 321 (407)
T ss_pred HHHHHHHHHhCc----------------------CeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 876554421100 0122456666777777778887755433348899999999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++++.+ .++++.+.+.... +...+.+.|.++||.++ .+|.+...
T Consensus 322 ~-------g~~v~~---------~~~i~~l~~~~~~----~~~~~~~~L~~~GI~~~--~~~~p~~~------------- 366 (407)
T PRK07179 322 L-------GYNIRS---------ESQIIALETGSER----NTEVLRDALEERNVFGA--VFCAPATP------------- 366 (407)
T ss_pred c-------CCCCCC---------CCCEEEEEeCCHH----HHHHHHHHHHHCCceEe--eecCCCCC-------------
Confidence 7 454442 1577777764311 12347778889999854 23433211
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|||++.++|++|+++++++|++++.+
T Consensus 367 -----------------~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~ 398 (407)
T PRK07179 367 -----------------KNRNLIRLSLNADLTASDLDRVLEVCREARDE 398 (407)
T ss_pred -----------------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 01378999999999999999999999987643
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=219.66 Aligned_cols=305 Identities=13% Similarity=0.135 Sum_probs=198.7
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcE
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSF 151 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdv 151 (815)
.+|+.+++++.+.+... ...|. .. ..++|+.+++++++++++ |++|+|+++++.+++.++ .+|++
T Consensus 33 ~~p~~~~~a~~~~~~~~-~~y~~------~~----~~~lr~~ia~~~~~~~~~--i~it~Ga~~~l~~~~~~l--~~g~v 97 (356)
T PRK08056 33 GMPVSLKRAIIDNLDCA-ERYPD------VE----YRHLHQALARHHQVPASW--ILAGNGETESIFAVVSGL--KPRRA 97 (356)
T ss_pred CCCHHHHHHHHHHHHhc-ccCcC------cc----HHHHHHHHHHHhCcChhh--EEECCCHHHHHHHHHHHh--CCCCE
Confidence 35667777776544321 11222 12 679999999999999887 999999999999999886 56787
Q ss_pred EEecCCCcchhhHHHHhhccc----eEEcCchhhhcch-hhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---HH
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNML-NEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS---WC 223 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~-~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~---~I 223 (815)
++..+.|+. +...++..| .++.+.++.+.++ .+.+ ...+++++|++++++||||..++.+ +|
T Consensus 98 iv~~P~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~-------~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i 167 (356)
T PRK08056 98 MIVTPGFAE---YRRALQQVGCEIRRYSLREADGWQLTDAILE-------ALTPDLDCLFLCTPNNPTGLLPERQLLQAI 167 (356)
T ss_pred EEeCCCcHH---HHHHHHHcCCeEEEEecccccCCCccHHHHH-------hccCCCCEEEEeCCcCCCCCCCCHHHHHHH
Confidence 666655443 344444455 4555543333333 2222 2346799999999999999999954 45
Q ss_pred HHHhhccccccccccCCCCeEEEEeccccc----CCCCC-CCCCCCCcEEEEccccccccCCc--ceEEEEec-cccccc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNML-DLKQHQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVL 295 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~-dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l 295 (815)
.++|+ ++++++|+|+++.- +...+ .+...+..+++.|+||+|| .+| +||++.++ +.++.+
T Consensus 168 ~~~a~-----------~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~~v~~~~~~~~~l 235 (356)
T PRK08056 168 AERCK-----------SLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYA-IPGLRLGYLVNSDDAAVARM 235 (356)
T ss_pred HHHHH-----------hcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhcc-CcchhheeeecCCHHHHHHH
Confidence 56666 89999999998532 11111 1233456788999999999 667 89998853 444433
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
... ....+.+..+..++..+++.- .....+ ++.++.++++.+.|+++
T Consensus 236 ~~~--------------------------~~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~----- 283 (356)
T PRK08056 236 RRQ--------------------------QMPWSINAFAALAGEVILQDR-AYQQATWQWLAEEGARFYQALCAL----- 283 (356)
T ss_pred HHh--------------------------CCCCchhHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHhcC-----
Confidence 211 111233444444444444211 111122 66778888888889877
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
+++.++.+ .++++++.++.. . .++.+.|.++||.++.|..+.
T Consensus 284 -~~~~~~~~--------~~~~~~~~~~~~-~-----~~~~~~l~~~gI~v~~~~~f~----------------------- 325 (356)
T PRK08056 284 -PLLTVWPG--------RANYLFLRCERP-D-----IDLQRALLTQRILIRSCANYP----------------------- 325 (356)
T ss_pred -CCcEEcCC--------CCcEEEEEcCCC-h-----HHHHHHHHHCCeEEEECCCCC-----------------------
Confidence 56666533 267777766531 1 247778878999999886431
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+...++|||+++ +.++.++|+++|++++.
T Consensus 326 ----------~~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 354 (356)
T PRK08056 326 ----------GLDSRYYRVAIR---SAAENERLLAALRNVLT 354 (356)
T ss_pred ----------CCCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence 111379999998 78999999999998754
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=222.23 Aligned_cols=316 Identities=15% Similarity=0.147 Sum_probs=211.4
Q ss_pred hhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+.|+.+.... +++.+.+++.+.+.... .+|. .. ..++|+.+++++++++++ |++|+|+++++.++
T Consensus 31 ~i~l~~nen~~~~~~~v~~a~~~~~~~~~-~Yp~------~g----~~~Lr~aia~~~~~~~~~--I~vt~Gs~e~i~~~ 97 (366)
T PRK01533 31 FVKLASNENPFGCSPRVLDELQKSWLDHA-LYPD------GG----ATTLRQTIANKLHVKMEQ--VLCGSGLDEVIQII 97 (366)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHHhcC-cCCC------CC----HHHHHHHHHHHhCCCcce--EEECCCHHHHHHHH
Confidence 35555555553 55667777765543321 1222 12 678999999999999887 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+.++. ++|| +++..+.|+.+.......+... .++++ ++.++++.++++ +.++++++++++|+||||.++
T Consensus 98 ~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~-------~~~~~~~v~i~~P~NPTG~~~ 168 (366)
T PRK01533 98 SRAVL-KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NGVYDLDEISSV-------VDNDTKIVWICNPNNPTGTYV 168 (366)
T ss_pred HHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCCcCHHHHHHH-------hCcCCcEEEEeCCCCCCCCCc
Confidence 99998 8999 8888866665544433322221 45554 334666666543 346789999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCC------CCCC-CCCCCCcEEEEccccccccCCc--ceEEEEec
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS------NMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQ 289 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~------~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~ 289 (815)
+.+++.++++ .|++++ ++++|+++.--. ..+. +...+..+++.||+|.|| .+| +||+++++
T Consensus 169 ~~~~l~~l~~--------~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-l~GlRiG~~i~~~ 238 (366)
T PRK01533 169 NDRKLTQFIE--------GISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYG-LASFRVGYAVGHE 238 (366)
T ss_pred CHHHHHHHHH--------hCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhc-ChHHHHhHHhCCH
Confidence 9999888887 344666 577898864211 0111 112234578889999999 557 79999988
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++++.+.... ..++.+.++..++..+++.........+...+.++++.+.++.+
T Consensus 239 ~~~~~l~~~~--------------------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~~~ 292 (366)
T PRK01533 239 ELIEKLNVVR--------------------------LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKEN 292 (366)
T ss_pred HHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7776553211 12355666666666666431111111245556666676777665
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+++++.+ .++++++.++ +. .++.+.|.++||.|+. |
T Consensus 293 -------g~~~~~~--------~~nf~~~~~~--~~-----~~~~~~l~~~GI~Vr~---~------------------- 328 (366)
T PRK01533 293 -------EIPFYQS--------QTNFIFLPVE--NG-----GEIYEACAHAGFIIRP---F------------------- 328 (366)
T ss_pred -------CCccCCC--------cCcEEEEeCC--CH-----HHHHHHHHHCCcEEcc---C-------------------
Confidence 5555543 3678888764 22 2478888899999985 1
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCc
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~ 500 (815)
.+++|||++ +.+++++|+++|++++.+...
T Consensus 329 ------------------~~~iRis~~---~~~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 329 ------------------PNGVRITVG---TREQNEGVISVLQQHFENKKR 358 (366)
T ss_pred ------------------CCceEEeCC---CHHHHHHHHHHHHHHHHhccc
Confidence 157999999 899999999999998755443
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-22 Score=220.37 Aligned_cols=330 Identities=15% Similarity=0.159 Sum_probs=208.0
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
+.+.|+.+... .+++.+.+++.+.+..... ..+..... ..++|+++++++|+++++ |++|+|+++|+.+
T Consensus 29 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~----~~y~~~~g----~~~lr~~ia~~l~~~~~~--v~~~~g~t~al~~ 98 (380)
T PRK06225 29 EMIWMGQNTNHLGPHEEVREAMIRCIEEGEY----CKYPPPEG----FPELRELILKDLGLDDDE--ALITAGATESLYL 98 (380)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCC----CCCCCCcc----hHHHHHHHHHhcCCCCCc--EEEeCCHHHHHHH
Confidence 34556654444 3456666666665542111 01111222 678999999999998876 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCc---hhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSV---DDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~---~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++.++. .+|| |++....|..+. ..++..| .++++. +..++++.+++ .++++++++++++++
T Consensus 99 ~~~~~~-~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~-------~~~~~~~~v~l~~p~ 167 (380)
T PRK06225 99 VMRAFL-SPGDNAVTPDPGYLIID---NFASRFGAEVIEVPIYSEECNYKLTPELVKE-------NMDENTRLIYLIDPL 167 (380)
T ss_pred HHHHhc-CCCCEEEEcCCCCcchH---HHHHHhCceEEeeccccccCCccCCHHHHHh-------hcCCCceEEEEeCCC
Confidence 999987 8898 888887665443 3333344 344422 12355565554 334678999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc---cCCCCC-CCCCCCCcEEEEccccccccCCc--ceEE
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---CGSNML-DLKQHQPDFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---~g~~~~-dl~~~~~D~vv~S~~K~~g~p~G--~G~l 285 (815)
||||.+++.+++.++++ .|+++|+++|+|+++. .+..+. .+ .....+++.|++|+|| ++| +|++
T Consensus 168 NptG~~~~~~~~~~i~~--------~a~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g-~~G~RiG~i 237 (380)
T PRK06225 168 NPLGSSYTEEEIKEFAE--------IARDNDAFLLHDCTYRDFAREHTLAAEY-APEHTVTSYSFSKIFG-MAGLRIGAV 237 (380)
T ss_pred CCCCcCCCHHHHHHHHH--------HHHHCCcEEEEehhHHHHhccCCchhhc-CCCCEEEEeechhhcC-CccceeEEE
Confidence 99999998555544444 2338999999999853 121111 11 1134577889999998 668 7999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYF 364 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~ 364 (815)
++++++++.+++... ...+.+..+..++..+++......... +..+++++.+.+
T Consensus 238 ~~~~~l~~~~~~~~~-------------------------~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~ 292 (380)
T PRK06225 238 VATPDLIEVVKSIVI-------------------------NDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKE 292 (380)
T ss_pred ecCHHHHHHHHHHHh-------------------------cccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 998887765533210 011234444444444444322221122 444555666777
Q ss_pred HHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.|+++ +++.+. .+. .++++++.+.... ++..++.+.|.++||.+++|.+|.+..
T Consensus 293 ~L~~~------~~~~~~~~~~-------~g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~--------- 347 (380)
T PRK06225 293 AVDEI------EGVFLPVYPS-------HGNMMVIDISEAG---IDPEDLVEYLLERKIFVRQGTYTSKRF--------- 347 (380)
T ss_pred HHHhC------cCCccccCCC-------CCeEEEEEccccc---CCHHHHHHHHHHCCEEEcCCcccCcCC---------
Confidence 77775 343221 122 2567777665321 234568888889999999886553210
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++. +++++++++++|++++.
T Consensus 348 -----------------------~~~~iR~s~~~--~~e~l~~~~~~l~~~~~ 375 (380)
T PRK06225 348 -----------------------GDRYIRVSFSI--PREQVEVFCEEFPDVVE 375 (380)
T ss_pred -----------------------CCceEEEEeCC--CHHHHHHHHHHHHHHHH
Confidence 13789999974 78999999999998764
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=215.42 Aligned_cols=313 Identities=15% Similarity=0.183 Sum_probs=206.6
Q ss_pred hhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 65 LDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 65 Ld~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
|+.+... .+|+.+.+++.+.+..... .+ +. ... ..++|+.+++++++++++ |++|+|+++++.+++.+
T Consensus 27 l~~~~~~~~~p~~~~~a~~~~~~~~~~---~~-y~-~~~----~~~lr~~ia~~~~~~~~~--i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 27 MDANETPFELPEEVIKNIQEIVKSSQV---NI-YP-DPT----AEKLREELARYCSVVPTN--IFVGNGSDEIIHLIMLA 95 (351)
T ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCcc---cC-CC-Ccc----HHHHHHHHHHHhCCCccc--EEEecCHHHHHHHHHHH
Confidence 4444444 3567777776654432110 10 10 112 678999999999998887 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. ++|| |++..+.|+.+ ...++..| .++++.+..++++.++++++ ..+++++++++++||||..+
T Consensus 96 l~-~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~------~~~~k~v~l~~p~NPtG~~~ 165 (351)
T PRK14807 96 FI-NKGDVVIYPHPSFAMY---SVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIE------KYQPKLVFLCNPNNPTGSVI 165 (351)
T ss_pred hc-CCCCEEEEeCCChHHH---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHhh------ccCCCEEEEeCCCCCCCCCC
Confidence 87 8999 88877666543 33334444 45555444566666665432 23789999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCC-CCCCCCcEEEEccccccccCCc--ceEEEEeccccc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAH 293 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~ 293 (815)
|.+++.++++ .++.++++|+++.. +....+ +......+++.|++|.|| .+| +||++.++++++
T Consensus 166 ~~~~l~~l~~-----------~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 166 EREDIIKIIE-----------KSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFG-LAGLRVGYAVANENILK 233 (351)
T ss_pred CHHHHHHHHH-----------hCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcc-cchhceeeeecCHHHHH
Confidence 9999999998 66678999998742 111111 112234588899999998 557 899999887766
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccC
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+.... .....+.....++..+++. .......++..+.++++.+.|+++
T Consensus 234 ~~~~~~--------------------------~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~r~~l~~~l~~~---- 282 (351)
T PRK14807 234 YLNLVK--------------------------SPYNINSLSQVIALKVLRT-GVLKERVNYILNERERLIKELSKI---- 282 (351)
T ss_pred HHHHcc--------------------------CCCCcCHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhC----
Confidence 553211 0112344445555444432 111112256677777888888776
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++.+..+. ++++++.+++ ..++.+.|.++||.++.+.. ..
T Consensus 283 --~g~~~~~~~--------~~~~~i~~~~-------~~~~~~~l~~~gV~v~~~~~-~~--------------------- 323 (351)
T PRK14807 283 --PGIKVYPSK--------TNFILVKFKD-------ADYVYQGLLERGILVRDFSK-VE--------------------- 323 (351)
T ss_pred --CCcEECcCC--------ccEEEEEcCC-------HHHHHHHHHHCCEEEEECCC-CC---------------------
Confidence 577765322 5666666642 23577888889999975321 00
Q ss_pred CccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+ ..+++||+++ +.++.++|+++|++++
T Consensus 324 -----------~-~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 324 -----------G-LEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred -----------C-CCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 0 1378999998 6789999999998864
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=220.08 Aligned_cols=317 Identities=14% Similarity=0.127 Sum_probs=213.9
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~ 138 (815)
+.++|+.+... .+++.+.+++.+.+... ...+|. .. ..++|+.+++++|.++++ +|++|+|+++++.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~~----~~~lr~~ia~~~~~~~~~-~I~~t~G~~~~i~ 95 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD------PR----AAALKAALRAAMGVPAGA-DVLLGNGSDELIQ 95 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC------CC----HHHHHHHHHHHhCcCCCC-cEEEcCCHHHHHH
Confidence 34566666555 45677777777655421 111221 12 678999999999987541 3999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+++.++. ++|| +++..+.|+.+ ...+...| .++++++..++++.++++++ ..++++|++++++||
T Consensus 96 ~~~~~~~-~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~------~~~~~~v~l~~p~NP 165 (356)
T PRK04870 96 LLALACA-KPGATVLAPEPGFVMY---RMSAKLAGLEFVGVPLTADFTLDLPAMLAAIA------EHRPALVFLAYPNNP 165 (356)
T ss_pred HHHHHhc-CCCCEEEECCCCHHHH---HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhh------cCCCCEEEEcCCCCC
Confidence 9999887 8999 88887666544 44444455 44555444567777665432 246899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-C--CCCCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-M--LDLKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~--~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
||.++|.+++.++++ ..++++|+|+++..-.. . ..+...+..+++.|++| ++ .+| +||++++
T Consensus 166 tG~~~~~~~~~~i~~-----------~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~-~~GlRiG~~i~~ 232 (356)
T PRK04870 166 TGNLFDDADVERIIE-----------AAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LG-LAGLRLGYLAGH 232 (356)
T ss_pred CCCCCCHHHHHHHHH-----------HCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hh-hHHHhhhhhhCC
Confidence 999999999999998 33778999988642111 0 11222334578889999 77 558 8999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
++.++.+.... ...+.+.++..++..+++.........++.++.++++.+.|++
T Consensus 233 ~~~i~~~~~~~--------------------------~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 286 (356)
T PRK04870 233 PAWIAELDKVR--------------------------PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA 286 (356)
T ss_pred HHHHHHHHHcc--------------------------CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87766553221 0113344444444455543222222237778888888889988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +++.+.. . .++++++.++ + ..++.+.|.++||.++.+..+..
T Consensus 287 ~------~~~~~~~-~-------~~~~~~~~~~--~-----~~~~~~~l~~~gI~v~~~~~f~~---------------- 329 (356)
T PRK04870 287 L------PGVTVFP-S-------AANFILVRVP--D-----AAAVFDGLKTRGVLVKNLSGMHP---------------- 329 (356)
T ss_pred C------CCcEECC-C-------CCeEEEEECC--C-----HHHHHHHHHHCCEEEEECCCCCC----------------
Confidence 7 6776542 2 2567777765 1 23577888999999998754311
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+++|+|++ +.+++++|+++|+++
T Consensus 330 -----------------~~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 330 -----------------LLANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred -----------------CCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 11379999998 789999999999875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=222.09 Aligned_cols=333 Identities=11% Similarity=0.080 Sum_probs=211.2
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCc
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~ 133 (815)
+.++|+.+... ++++.+.+++.+.+...... +..... ..++|+.++++++ +++++ |++|+|+
T Consensus 33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~-----Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~--i~it~G~ 101 (387)
T PRK08960 33 DVIHLEIGEPDFTTAEPIVAAGQAALAAGHTR-----YTAARG----LPALREAIAGFYAQRYGVDVDPER--ILVTPGG 101 (387)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCc-----cCCCCC----CHHHHHHHHHHHHHHhCCCCChhh--EEEccCc
Confidence 44677777666 45677777776665432111 111223 6788888888873 66766 9999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
++|+.+++.++. .+|| |++..++|+++..+....+... .++++.++ .++++.++++ +.++++++++++
T Consensus 102 ~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-------~~~~~~~i~i~~ 173 (387)
T PRK08960 102 SGALLLASSLLV-DPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERH-------WNADTVGALVAS 173 (387)
T ss_pred HHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHH-------hCccceEEEEEC
Confidence 999999999997 8999 9999999988877666544333 56666543 3555555543 346789999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC---CCCCCCCCCCC-cEEEEccccccccCCc--ce
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG---SNMLDLKQHQP-DFISISFYKMFGYPTG--LG 283 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g---~~~~dl~~~~~-D~vv~S~~K~~g~p~G--~G 283 (815)
++||||..+|.+++.++++ .|+++|+++++|+++.-- .....+..... .+++.|+||.|| ++| +|
T Consensus 174 p~NPtG~~~~~~~~~~l~~--------~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG 244 (387)
T PRK08960 174 PANPTGTLLSRDELAALSQ--------ALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFG-MTGWRLG 244 (387)
T ss_pred CCCCCCcCcCHHHHHHHHH--------HHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccC-CcccEEE
Confidence 9999999999887666654 333899999999985421 11112222222 367789999999 568 89
Q ss_pred EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-HHh-hhhhHHHHHHHHHH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-MEK-KRKSFTNAFELSQY 361 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l~~-~~~~~~~~~~l~~~ 361 (815)
|+++++++++.+..... ....+.+.+...++..++.. ... .....+...+.++.
T Consensus 245 ~~~~~~~~~~~~~~~~~------------------------~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~ 300 (387)
T PRK08960 245 WLVAPPAAVPELEKLAQ------------------------NLYISASTPAQHAALACFEPETLAILEARRAEFARRRDF 300 (387)
T ss_pred EEEcCHHHHHHHHHHHh------------------------hhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999887665532210 01112344444444444431 111 11112556666777
Q ss_pred HHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhc
Q psy16512 362 TYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFL 439 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~ 439 (815)
+.+.|+++ ++.+. .|.+ +.+++++++... .+..++.+. +.++||.+.+|..|...
T Consensus 301 l~~~L~~~-------~~~~~~~p~g-------~~f~~~~~~~~~---~~~~~~~~~ll~~~gi~v~pg~~f~~~------ 357 (387)
T PRK08960 301 LLPALREL-------GFGIAVEPQG-------AFYLYADISAFG---GDAFAFCRHFLETEHVAFTPGLDFGRH------ 357 (387)
T ss_pred HHHHHHhc-------CCcCCcCCCe-------eEEEEEeccccC---CCHHHHHHHHHHhCCEEEcCchHhCCC------
Confidence 88888765 33332 2322 566676765421 122345554 56789999998654321
Q ss_pred CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 440 g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|++++. +.+.+...++.|.+++.
T Consensus 358 --------------------------~~~~~iRi~~~~--~~~~l~~al~~l~~~~~ 386 (387)
T PRK08960 358 --------------------------QAGQHVRFAYTQ--SLPRLQEAVERIARGLR 386 (387)
T ss_pred --------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 013689999995 56777777777766553
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=213.74 Aligned_cols=311 Identities=10% Similarity=0.042 Sum_probs=204.2
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+.|+.+... .+++.+.+++.+.+... ..+|. ... ..++|+.+++++|+++++ |++|+|+++++.++
T Consensus 24 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~-----~~g----~~~lr~aia~~~~~~~~~--I~it~Ga~~al~~~ 91 (349)
T PRK07908 24 LLDFAVNVRHDTPPEWLRERLAARLGDL-AAYPS-----TED----ERRARAAVAARHGRTPDE--VLLLAGAAEGFALL 91 (349)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHhhHh-hcCCC-----ccc----hHHHHHHHHHHhCcChhh--EEECCCHHHHHHHH
Confidence 3444444443 35566677776655331 12222 122 778999999999999887 99999999999998
Q ss_pred HhhhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 141 SEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 141 ~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
++ + .+|++++.. |++..+...++..| .++++.+..++.+.+ .++++++++++++||||.
T Consensus 92 ~~-l--~~~~viv~~---P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l-----------~~~~~~i~l~np~NPTG~ 154 (349)
T PRK07908 92 AR-L--RPRRAAVVH---PSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV-----------PDDADLVVIGNPTNPTSV 154 (349)
T ss_pred Hh-c--CCCeEEEeC---CCChHHHHHHHHcCCEEEeeccCcccCcChhHh-----------ccCCCEEEEcCCCCCCCC
Confidence 88 4 567766664 55544455555566 344443333343322 246899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCCCCCC--CCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
++|.++|.++++ . +.++|+|+++.- ...+.++... +..+++.|+||.|| ++| +||++++++
T Consensus 155 ~~~~~~l~~l~~-----------~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~-l~GlRiG~~~~~~~ 221 (349)
T PRK07908 155 LHPAEQLLALRR-----------P-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWS-LAGLRVGYALGAPD 221 (349)
T ss_pred CcCHHHHHHHHh-----------c-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccC-CccceeeeeecCHH
Confidence 999999999987 4 668888998742 2222333222 23356679999998 667 699999888
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD--TMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~--~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++.+.+... ..+.+.....++...++ .........++..++++++.+.|++
T Consensus 222 ~~~~~~~~~~--------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 275 (349)
T PRK07908 222 VLARLTRGRA--------------------------HWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA 275 (349)
T ss_pred HHHHHHhcCC--------------------------CCCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766543211 11222333333333222 1111111126677888888888887
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +++++.+.. ++++++.+++ . .++.+.|.++||.+++|..+..
T Consensus 276 ~-------~~~~~~p~~-------g~~~~~~~~~--~-----~~~~~~l~~~gI~v~~g~~f~~---------------- 318 (349)
T PRK07908 276 V-------GARVVDPAA-------APFVLVRVPD--A-----ELLRKRLRERGIAVRRGDTFPG---------------- 318 (349)
T ss_pred C-------CcEeccCCC-------ceEEEEECCc--H-----HHHHHHHHhCCEEEEECCCCCC----------------
Confidence 6 567765543 7888887764 1 2578888999999998864321
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|||++ +.+++++|+++|++++..
T Consensus 319 -----------------~~~~~vRis~~---~~~~~~~l~~al~~~~~~ 347 (349)
T PRK07908 319 -----------------LDPDYLRLAVR---PRAEVPVLVQALAEILKA 347 (349)
T ss_pred -----------------CCCCeEEEEeC---CCccHHHHHHHHHHHHhc
Confidence 11379999997 789999999999997643
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=219.50 Aligned_cols=294 Identities=14% Similarity=0.178 Sum_probs=193.2
Q ss_pred HHHHHHHHHhH----cC--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQY----FN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~----~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++ +| +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+....+..+... .++.+.
T Consensus 63 ~~~lr~~la~~~~~~~~~~~~~~~--i~~t~g~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~ 139 (382)
T PRK06108 63 IPELREALARYVSRLHGVATPPER--IAVTSSGVQALMLAAQALV-GPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDF 139 (382)
T ss_pred CHHHHHHHHHHHHHHhCCCcCcce--EEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCC
Confidence 44566666665 46 66665 9999999999999999987 8999 8888888877655444332222 455553
Q ss_pred hh---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 179 DD---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 179 ~~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
++ ..+++.+++.+ .++++++++++++||||..+|.+++.++++ .|+++|+++|+|+++....
T Consensus 140 ~~~~~~~d~~~l~~~~-------~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~--------~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 140 GGGGWTLDLDRLLAAI-------TPRTRALFINSPNNPTGWTASRDDLRAILA--------HCRRHGLWIVADEVYERLY 204 (382)
T ss_pred CCCCccCCHHHHHHhc-------CccceEEEEECCCCCCCcccCHHHHHHHHH--------HHHHCCcEEEEehhhhhhc
Confidence 21 35566665433 457899999999999999998766555444 2338999999998865332
Q ss_pred CC--------CCCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 256 NM--------LDLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 256 ~~--------~dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
.. .++.. .+..+++.|+||.|| ++| +||+++++++++.+.... .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~~~~~~~~~------------------------~ 259 (382)
T PRK06108 205 YAPGGRAPSFLDIAEPDDRIIFVNSFSKNWA-MTGWRLGWLVAPPALGQVLEKLI------------------------E 259 (382)
T ss_pred cCCCCCCCCHhhcCCCcCCEEEEeechhhcc-CcccceeeeeCCHHHHHHHHHHH------------------------H
Confidence 11 12221 134578899999998 446 799999888776553221 0
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
+....++.....++..+++.....-.. .++++++++++.+.|.++ +++++..+.+ +.++++.++..
T Consensus 260 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~~-------g~~~~~~l~~~ 326 (382)
T PRK06108 260 YNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRAL------PGVEVAKPDG-------AMYAFFRIPGV 326 (382)
T ss_pred hcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe-------eEEEEEeCCCC
Confidence 111233444444444555332111112 277788888899999877 5777765542 55666666532
Q ss_pred CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
. +..++.+.| .++||.+++|..+.+. ..+++|+|++. +.+
T Consensus 327 ~----~~~~~~~~ll~~~gV~v~pg~~f~~~---------------------------------~~~~~Ris~~~--~~~ 367 (382)
T PRK06108 327 T----DSLALAKRLVDEAGLGLAPGTAFGPG---------------------------------GEGFLRWCFAR--DPA 367 (382)
T ss_pred C----CHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEecC--CHH
Confidence 1 223455554 7789999988644210 13789999997 789
Q ss_pred HHHHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQYF 495 (815)
Q Consensus 483 di~~lv~~L~~~~ 495 (815)
+++.+++.|.+++
T Consensus 368 ~l~~~l~~l~~~l 380 (382)
T PRK06108 368 RLDEAVERLRRFL 380 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.4e-22 Score=217.93 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=193.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
..++|+.+++++++++++ |++|+|+++++..++.++. ++|| +++..+.|+.+.......+... .++.+ ++..++
T Consensus 66 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~~~-~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~ 141 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQ--LLFGAGLDEVIQMISRALL-NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDL 141 (359)
T ss_pred HHHHHHHHHHHhCCCHHH--EEECCCHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCH
Confidence 678999999999998877 9999999999999999987 8999 8888877665543333222211 55555 344555
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCC-
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLD- 259 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~d- 259 (815)
+.+++ .+.++++++++++|+||||.++|.++|.++++. | ++++++|+|+++.... .+..
T Consensus 142 ~~l~~-------~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~--------~-~~~~~ii~De~y~~~~~~~~~~~~~ 205 (359)
T PRK03158 142 EAMLK-------AIDEQTKIVWICNPNNPTGTYVNHEELLSFLES--------V-PSHVLVVLDEAYYEYVTAEDYPDTL 205 (359)
T ss_pred HHHHH-------hcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHh--------C-CCCcEEEEECchHhhcCCcccccHH
Confidence 55544 234678999999999999999999999999982 1 3699999999875321 1111
Q ss_pred --CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 260 --LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 260 --l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
+...+..+++.||+|.|| .+| +||+++++++++.+.... .....+.++.
T Consensus 206 ~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~v~~~~~~~~~~~~~--------------------------~~~~~~~~~q 258 (359)
T PRK03158 206 PLLEKYENLIVLRTFSKAYG-LAALRVGYGIASEELIEKLNIAR--------------------------PPFNTTRIAQ 258 (359)
T ss_pred HHHHhcCCEEEEEechHhhc-CcchhhehhcCCHHHHHHHHHhc--------------------------CCCCCCHHHH
Confidence 112345688899999999 668 699999888776553221 0113455566
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++..+++.-.......+..++.++++.+.|.+. ++.++.+. ++++++.+.. + ..++.+
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~--------g~~i~~~~~~-~-----~~~~~~ 317 (359)
T PRK03158 259 YAAIAALEDQAFLKECVEKNAEGLEQYYAFCKEY-------GLFYYPSQ--------TNFIFVDTGR-D-----ANELFE 317 (359)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeeCCCc--------CcEEEEECCC-C-----HHHHHH
Confidence 6665555421111111145566677777777765 45554322 5666666531 1 235777
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.|.++||.+++|..+.. .+++||+++ +.+++++++++|+++
T Consensus 318 ~l~~~gv~v~~g~~f~~-----------------------------------~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 318 ALLKKGYIVRSGAALGF-----------------------------------PTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred HHHHCCeEEeeCCCCCC-----------------------------------CCeEEEecC---CHHHHHHHHHHHHHh
Confidence 78789999998864320 378999998 899999999999885
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=219.05 Aligned_cols=332 Identities=12% Similarity=0.106 Sum_probs=209.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~~~ 182 (815)
++++++.+++++|++. .++++|+++|+.+++.++. ++|| ||++..+|++...+.. .+.+.| ...++.+
T Consensus 66 ~~~le~~lA~l~g~~~----av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~--- 137 (433)
T PRK08134 66 VAVLEERVAALEGGVG----AIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG--- 137 (433)
T ss_pred HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC---
Confidence 8899999999999864 6889999999999999985 8999 8898989987655433 345566 3344432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++.+++||+|.+.|+++|+++|+ ++|+++++|++++.|....++ .
T Consensus 138 d~~~l~~-------~i~~~TklV~~e~~~np~g~v~Di~~I~~la~-----------~~gi~livD~t~a~~~~~~pl-~ 198 (433)
T PRK08134 138 DIDGWRA-------AIRPNTRLLFGETLGNPGLEVLDIPTVAAIAH-----------EAGVPLLVDSTFTTPYLLRPF-E 198 (433)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCcccCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 4455554 34578999999999999999999999999999 899999999999998876655 6
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-c-------cccccCcccccCceEEEEecCC--cccccccCccccccCCCC
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-K-------SAHVLNKTFYGGGTVKISMANE--NFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~-------~~~~l~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~gt~ 330 (815)
+++|++++|.||+++ +.| +|.+++.. . ....+.+.+.+++......... .+.........+.....+
T Consensus 199 ~GaD~vv~S~tK~l~-g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~l 277 (433)
T PRK08134 199 HGADLVYHSATKFLG-GHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACL 277 (433)
T ss_pred cCCCEEEeccccccC-CCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCC
Confidence 799999999999999 556 66666642 1 1112223332222111000000 000000000001112334
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC----------CCcccceEEEE
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE----------SKYQGNIVNFN 399 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~----------~~~~~~i~~f~ 399 (815)
+....+.+..+++. +..++++..+.+..+.+.|++. |.+. ++-|...+. ....+++++|.
T Consensus 278 s~~~A~l~~~gL~t---l~~R~~~~~~nA~~la~~L~~~------p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~ 348 (433)
T PRK08134 278 SPMNAWQLLQGIET---LPLRMERHVANTRKVVAFLASH------PAVARVAHPELESHPDHALAKRLLPRGAGSVFSFD 348 (433)
T ss_pred CHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEE
Confidence 44444333334333 3334577888888888888877 4432 222221110 13468999999
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
+.+.. + ....+.+.|....+.++.|.. +.++....+..++++...+. |...+.||+|+|
T Consensus 349 l~~~~-~--~~~~f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~---------------Gi~~~liRlsvG 410 (433)
T PRK08134 349 LKGGR-A--AGRKFIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAA---------------GIGEGTIRLSIG 410 (433)
T ss_pred ecCCH-H--HHHHHHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhc---------------CCCCCeEEEEec
Confidence 96421 1 112456666665656665632 22333334555555443322 566789999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy16512 477 HASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~ 493 (815)
..+.++-++.|.++|++
T Consensus 411 lE~~~dli~dl~~Al~~ 427 (433)
T PRK08134 411 LEDADDLIDDLKRALKA 427 (433)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 87766666777777765
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-21 Score=190.60 Aligned_cols=347 Identities=12% Similarity=0.118 Sum_probs=251.8
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
...++..+.+++.. ...++. ..+.-++ ++++++.+...|.+... +..++..+++.+++.++..+. .||
T Consensus 25 Psnl~~~V~~A~~~----~~lgh~--sPe~~qI----m~~v~egikyVFkT~n~-~tf~isgsGh~g~E~al~N~l-ePg 92 (385)
T KOG2862|consen 25 PSNLSGRVQEAMSR----PSLGHM--SPEFVQI----MDEVLEGIKYVFKTANA-QTFVISGSGHSGWEAALVNLL-EPG 92 (385)
T ss_pred CcCCCHHHHHhhcC----CccccC--CHHHHHH----HHHHHHHHHHHhccCCC-ceEEEecCCcchHHHHHHhhc-CCC
Confidence 44456666665532 222222 2556666 89999999999987655 467888888899999999998 899
Q ss_pred c-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC-hHHH
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP-LSWC 223 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~-l~~I 223 (815)
| +++.. ...--..+...+++.| .++.+......++.+.++|. ..++++|+++|..+.||+..| ++.+
T Consensus 93 d~vLv~~-~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~ls------qh~p~~vfv~hgdsSTgV~q~~~~~~ 165 (385)
T KOG2862|consen 93 DNVLVVS-TGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLS------QHKPKAVFVTHGDSSTGVLQDLLAIS 165 (385)
T ss_pred CeEEEEE-echHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHH------hcCCceEEEEecCccccccchHHHHH
Confidence 9 44433 2222345777888888 55666666777777776554 367899999999999999999 6667
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGG 303 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~ 303 (815)
.++|| +|+++++||+..++|..++-++++++|+.....+|.++.|+|++.+..++.+.++++..-.+.
T Consensus 166 g~lc~-----------k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~- 233 (385)
T KOG2862|consen 166 GELCH-----------KHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKP- 233 (385)
T ss_pred HHHhh-----------cCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCc-
Confidence 88999 999999999999999999999999999999999999999999999999888877665332111
Q ss_pred eEEEEecC---CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 304 TVKISMAN---ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 304 ~~~~~~~~---~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
..++++. .+++. ...+.+....|++...++++.+||+.+.+.|... +++++++++++..|.++ |+
T Consensus 234 -~~~yFd~~~~~~~wg--c~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-------GL 303 (385)
T KOG2862|consen 234 -VSFYFDILRLGNFWG--CDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-------GL 303 (385)
T ss_pred -eEEEEeHHhhcchhc--cCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------Cc
Confidence 1111111 12221 2233467788999999999999999999887655 99999999999999998 77
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
++..... ..+...+.++.++.. ++..++...+. .+++.+..|...
T Consensus 304 q~fv~~e---~~rlptvttv~vp~g----vDw~dVv~~~~~~~~vei~gglg~--------------------------- 349 (385)
T KOG2862|consen 304 QLFVVDE---ELRLPTVTTVKVPYG----VDWKDVVAYAMSHYVVEIGGGLGP--------------------------- 349 (385)
T ss_pred cceecCh---hhccCcceeeecCCC----CCHHHHHHHHHHhcCEEeccccCC---------------------------
Confidence 7665433 133455566666531 33345666664 447777655211
Q ss_pred CcccccCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcC
Q psy16512 458 DDKDIIDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~ 499 (815)
..+.++||.+-.+ .+.+-|+..++.|+..+.+++
T Consensus 350 --------~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~~~ 384 (385)
T KOG2862|consen 350 --------TVGKVFRIGLLGCNANVEYIDNVVELLKLALQRKK 384 (385)
T ss_pred --------CcccEEEEEEeeccCCcHHHHHHHHHHHHHHhhcc
Confidence 1146899996555 478999999999998876553
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=221.20 Aligned_cols=311 Identities=15% Similarity=0.084 Sum_probs=201.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccceEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQIYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g~v~~~~~~~~~~ 184 (815)
.+++++.+++++|.+. .++++++++|+.+++.++. ++|| +|++...|+........ +...+. .+...+..++
T Consensus 63 ~~~Le~~lA~l~G~~~----al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi-~~~~~~~~d~ 136 (386)
T PRK06767 63 VKLFEERMAVLEGGEE----ALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGCTYGFLEVLEEKFMI-THSFCDMETE 136 (386)
T ss_pred hHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHHHhhcCe-EEEEeCCCCH
Confidence 8899999999999753 4555566779999998887 8999 88888878766554333 333441 1111111234
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ 264 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~ 264 (815)
+.+++ .+.++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+....++ ..+
T Consensus 137 ~~l~~-------~i~~~tklV~lesp~NptG~v~dl~~I~~la~-----------~~g~~vivD~a~a~~~~~~pl-~~g 197 (386)
T PRK06767 137 ADIEN-------KIRPNTKLIFVETPINPTMKLIDLKQVIRVAK-----------RNGLLVIVDNTFCSPYLQRPL-ELG 197 (386)
T ss_pred HHHHH-------hhCcCceEEEEeCCCCCCceecCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-hcC
Confidence 44444 33467999999999999999999999999999 899999999999876544444 457
Q ss_pred CcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
+|+++.|++|+++++.+ .|+++.+++.++.+...+. ....+..+....+.+..++
T Consensus 198 ~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~-----------------------~~~g~~~~~~~a~l~~~~L 254 (386)
T PRK06767 198 CDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMR-----------------------KDIGGIMAPFDAWLLLRGL 254 (386)
T ss_pred CcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHcCC
Confidence 89999999999996643 4888888876654321110 0011222322222332333
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCC---CCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDY---GESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~---~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
+ .....+++.++++..+.+.|+++ |+++. .-|... ......+++++|.+.+.. .....+.+.|+
T Consensus 255 ~---tl~~r~~~~~~~a~~la~~L~~~------p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~---~~~~~f~~~l~ 322 (386)
T PRK06767 255 K---TLAVRMDRHCDNAEKIVSFLKNH------DAVEGVWYPEGELASRQMKRGGGVISFSIKGGK---EETQAFINDLH 322 (386)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHcC------CCccEEECCCcHHHHHhCCCCCceEEEEEcCCH---HHHHHHHHhCC
Confidence 3 22234477889999999999988 66663 323110 001234789999986321 12345888889
Q ss_pred cCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 419 LKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 419 ~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
..++.++.|..-+ ++....+..+++++..+ .|..++.||+|+|..+.++-++.|.++|.
T Consensus 323 ~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~l~R~svGlE~~~dl~~dl~~al~ 384 (386)
T PRK06767 323 FITIAVSLGDTETLIQHPATMTHAAIPAELRQE---------------MGIYDNLIRLSVGLESWEDIVSDLEQALK 384 (386)
T ss_pred ccEEecCCCCcCccccCCCccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 9999998884322 23333334454443322 25667899999998665555555555554
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=216.47 Aligned_cols=318 Identities=15% Similarity=0.099 Sum_probs=212.0
Q ss_pred chhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
++++.+++.+.+.. ...++++. ...... .+++++.+++++|++. .++++++++++..++.++. ++||
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~----~iv~~sg~~a~~~~~~~~~-~~gd 86 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGGSRLISGTSDL----HEELEEELAEFHGKEA----ALVFSSGYAANDGVLSTLA-GKGD 86 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCCcCeecCCchH----HHHHHHHHHHHhCCCC----EEEeccHHHHHHHHHHHhc-CCCC
Confidence 47788888877753 22222211 122333 7899999999999853 3445556778888888887 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|+++..+|+++..... ..| ...+.. .+.+.+++++++.. ...++++|++++++|+||.+.|+++|.++|
T Consensus 87 ~Vl~~~~~~~~~~~~~~---~~g~~~~~~~~---~~~~~le~~i~~~~--~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~ 158 (349)
T cd06454 87 LIISDSLNHASIIDGIR---LSGAKKRIFKH---NDMEDLEKLLREAR--RPYGKKLIVTEGVYSMDGDIAPLPELVDLA 158 (349)
T ss_pred EEEEehhhhHHHHHHHH---HcCCceEEecC---CCHHHHHHHHHHhh--ccCCCeEEEEeccccCCCCccCHHHHHHHH
Confidence 8888888887654333 334 333321 23344444433110 024578999999999999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCCC--------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNM--------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~ 299 (815)
+ ++|+++|+|++++.|... .+....+.|+++.|+||+++ +.| |+++.++++.+.+....
T Consensus 159 ~-----------~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~g-G~i~~~~~~~~~~~~~~ 225 (349)
T cd06454 159 K-----------KYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFG-AVG-GYIAGSKELIDYLRSYA 225 (349)
T ss_pred H-----------HcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhc-ccC-CEEECCHHHHHHHHHhc
Confidence 9 899999999999876432 22334568999999999999 556 88888877655442211
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
. .....++.+...++++.++++.+.......++..++++++.+.|.++ ++.
T Consensus 226 ~----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~-------g~~ 276 (349)
T cd06454 226 R----------------------GFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKEL-------GFP 276 (349)
T ss_pred h----------------------hhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-------CCc
Confidence 0 00112456777788888888877653222388899999999999876 455
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
++.+.. +.+..+.+... .+..++.+.|.++||.++.+.+...
T Consensus 277 ~~~~~~-------~~~~~~~~~~~----~~~~~~~~~L~~~gI~~~~~~~~~~--------------------------- 318 (349)
T cd06454 277 VGGSPS-------HIIPPLIGDDP----AKAVAFSDALLERGIYVQAIRYPTV--------------------------- 318 (349)
T ss_pred ccCCCC-------CcEEEEeCCCh----HHHHHHHHHHHhCCceEEEecCCcc---------------------------
Confidence 554321 33334433211 1234588888888999976422100
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
....+++|++++.+++++|+++++++|+++
T Consensus 319 -----~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 319 -----PRGTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -----CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 011378999999999999999999999863
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=220.41 Aligned_cols=279 Identities=14% Similarity=0.106 Sum_probs=189.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-c-EEEecCCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
..++++++++++|+++++ |++|+|+++++.+++.++. ++| + ++++.++|+.+. ..++..| .++.+.+.
T Consensus 59 ~~~l~~~~a~~~g~~~~~--I~~~~Gs~e~i~~~~~~~~-~~g~~~vli~~P~y~~y~---~~~~~~G~~~~~v~~~~~~ 132 (351)
T PRK01688 59 PKAVIENYAAYAGVKPEQ--VLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYS---VSAETIGVEIRTVPTLDNW 132 (351)
T ss_pred hHHHHHHHHHHhCCCHHH--EEEcCCHHHHHHHHHHHhc-CCCCCEEEEcCCCHHHHH---HHHHHcCCEEEEeecCCCC
Confidence 568999999999999988 9999999999999999997 786 7 888776665543 3444445 45555544
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--- 257 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--- 257 (815)
..+++.+.++ + +++++|++++||||||..++.+++.++++ .|++ +++||+|+++.--...
T Consensus 133 ~~d~~~l~~~-------~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~--------~~~~-~~~vivDEay~~f~~~~s~ 195 (351)
T PRK01688 133 QLDLPAIADN-------L-DGVKVVYVCSPNNPTGNLINPQDLRTLLE--------LTRG-KAIVVADEAYIEFCPQASL 195 (351)
T ss_pred CCCHHHHHHh-------c-cCCcEEEEeCCCCCCCCCCCHHHHHHHHH--------hCCC-CcEEEEECchhhcCCCCCh
Confidence 5566665542 2 46899999999999999999999998887 2224 5789999996432211
Q ss_pred CCC-CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 258 LDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 258 ~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
.++ ...+.-+++.||+|+|| ++| +||++++++.++.+++.. .....+...
T Consensus 196 ~~~~~~~~n~iv~rSfSK~~g-laGlRiGy~i~~~~~i~~l~~~~--------------------------~~~~v~~~~ 248 (351)
T PRK01688 196 AGWLAEYPHLVILRTLSKAFA-LAGLRCGFTLANEEVINLLLKVI--------------------------APYPLSTPV 248 (351)
T ss_pred HHHHhhCCCEEEEecchHhhc-CHHHHHhHHhCCHHHHHHHHhcc--------------------------CCCCCCHHH
Confidence 111 12234477889999999 668 699999988876554321 111233333
Q ss_pred HHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 335 IISLKYGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 335 ~~al~~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
..++.++++. ...+....+++.+.++++.+.|.++ ++++.+.+.. ++++.+.+. + ..+
T Consensus 249 ~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~ps~-------~nfi~~~~~--~-----~~~ 308 (351)
T PRK01688 249 ADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEI------PCVEQVFDSE-------TNYILARFT--A-----SSA 308 (351)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCeECCCC-------CcEEEEEcC--C-----HHH
Confidence 3333344432 1111112266667788899999887 5664333332 677777664 1 134
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.++.+..+ .| . .+++|||++ +.+|+++|+++|+
T Consensus 309 l~~~L~~~gi~vr~~~~~--------~~-------------------------~-~~~iRis~~---~~~e~~~l~~al~ 351 (351)
T PRK01688 309 VFKSLWDQGIILRDQNKQ--------PG-------------------------L-SNCLRITIG---TREECQRVIDALR 351 (351)
T ss_pred HHHHHHHCCeEEEECCCc--------CC-------------------------C-CCeEEEeCC---CHHHHHHHHHhhC
Confidence 778888999999865321 01 1 378999999 7899999999873
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-22 Score=216.54 Aligned_cols=322 Identities=11% Similarity=0.078 Sum_probs=215.6
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
-+-+.+++|+++.+++.+...+ +. ..... ++++++.+++++|++ + +++|+|+|+|+.+++.++.
T Consensus 18 t~~g~s~~~~~v~~a~~~~~~~--~~------~~~~~----~~~~~~~~a~~~g~~--~--~~~~~g~t~al~~al~al~ 81 (363)
T TIGR01437 18 TILGVSTVSDEVADAQKRGAQN--YF------EIKEL----VNKTGEYIANLLGVE--D--AVIVSSASAGIAQSVAAVI 81 (363)
T ss_pred ecCCCCCCCHHHHHHHHHHHhc--CC------CHHHH----HHHHHHHHHHhhCCC--e--EEEEcCHHHHHHHHHHHHh
Confidence 3445677899999998876532 21 12344 889999999999975 3 8999999999999999987
Q ss_pred cCCCc----------------EEEecCCCcchh-hHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEE
Q psy16512 146 FNEGS----------------FIYLTDNHTSVL-GMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFV 206 (815)
Q Consensus 146 ~~~gd----------------vv~~~~~h~s~~-~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~ 206 (815)
++|| ||++.+.+..+. .+...+...| .+.++.+...+++.++++| +++|++++
T Consensus 82 -~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai-------~~~t~ai~ 153 (363)
T TIGR01437 82 -TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAI-------TEKTAAIL 153 (363)
T ss_pred -cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhc-------ChhceEEE
Confidence 7774 444442222221 1223333344 4444444556777776644 57888666
Q ss_pred -EecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 207 -YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 207 -i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
+++++|++|.+.|+++|.++|+ ++|+++++|++|+.... ....++.|++++|+||++++|. .|++
T Consensus 154 ~v~~~~~~~g~~~~~~~i~~~a~-----------~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l 219 (363)
T TIGR01437 154 YIKSHHCVQKSMLSVEDAAQVAQ-----------EHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLV 219 (363)
T ss_pred EEecCCCCcCCcCCHHHHHHHHH-----------HcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEE
Confidence 5677899999999999999999 89999999999973211 1124578999999999888787 7998
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYF 364 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~ 364 (815)
+.+++.++.+++...+.+ ..++.|+ ..++++.++++++...+... +...+.++++.+
T Consensus 220 ~~~~~~i~~~~~~~~~~~-------------------~~~~~~~---~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~ 277 (363)
T TIGR01437 220 LGKKKYIEWVKLQSKGIG-------------------RAMKVGK---ENILGLTAALEQYLSTGKESGAEMVAKLTPFIE 277 (363)
T ss_pred EEcHHHHHHHHhccCCCc-------------------ceeccCH---HHHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 888777765543322211 2234444 34677888888887655444 444556778999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC--cEeccCccCCchhhhhhcCCC
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK--IQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g--I~v~~g~~~~~~~~~~~~g~~ 442 (815)
.|+++ |+++++.+............+.|... ...++..++.+.|.+++ |.++. +
T Consensus 278 ~L~~i------~g~~~~~~~~~~~~~~~~~~v~~~~~---~~g~~~~~l~~~L~~~~~~I~~r~--~------------- 333 (363)
T TIGR01437 278 ALNTL------KGVSASIVQDEAGRDIARAEIRFDES---ELGMTAADVVQALRQGEPAIYTRG--Y------------- 333 (363)
T ss_pred HHhcC------CCeEEEEecCCCCCcCceEEEEEecc---CCCCCHHHHHHHHhcCCCCEEEee--e-------------
Confidence 99998 78888743220000001233444432 11245567999998777 65553 1
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
..+.+.+|+++.. ++++|+++++++|+++
T Consensus 334 ----------------------~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 334 ----------------------KANEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred ----------------------eecCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 1124789999885 5699999999999875
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=217.02 Aligned_cols=337 Identities=10% Similarity=0.080 Sum_probs=205.9
Q ss_pred hhhhhhhhccc--ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC--CC-CceeEEecCCch
Q psy16512 61 DICYLDYTGAG--VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT--DS-DHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~--~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~--~~-~~~~iv~t~g~t 134 (815)
+.++|...... .+++.+.+++.+.+... ...+++. ...... .+.+.+.+++++|. ++ ++ |++|+|++
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~-~G~~~L----R~aia~~l~~~~g~~~~~~~~--I~it~Ga~ 112 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEY-RGDADI----RELLAARLAAFTGAPVDAADE--LIITPGTQ 112 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCC-CCCHHH----HHHHHHHHHHHhCCCCCCCCC--EEEeCCcH
Confidence 34555554333 34566677666655421 1112211 011112 33344444555584 44 55 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-----hhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-----DDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-----~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
+++.+++.++. ++|| |++..+.|+.+....+..+... .++++. +..++++.+++++ .+++++|++
T Consensus 113 ~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~-------~~~~k~v~l 184 (405)
T PRK06207 113 GALFLAVAATV-ARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAF-------KAGVRVFLF 184 (405)
T ss_pred HHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhh-------hhcCeEEEE
Confidence 99999999998 9999 8888888876655444433222 344431 2345666665533 356899999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCC----CCCcEEEEccccccccC
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQ----HQPDFISISFYKMFGYP 279 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~----~~~D~vv~S~~K~~g~p 279 (815)
++|+||||.+++.+++.++++ .|+++++++|+|+++.- +.....+.. .+.-+++.||+|.|+ .
T Consensus 185 ~~P~NPTG~~~s~e~l~~l~~--------~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-l 255 (405)
T PRK06207 185 SNPNNPAGVVYSAEEIAQIAA--------LARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTES-L 255 (405)
T ss_pred CCCCCCCCcCCCHHHHHHHHH--------HHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhcc-C
Confidence 999999999999776555544 23389999999998653 211112221 123378889999999 4
Q ss_pred Cc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHH
Q psy16512 280 TG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAF 356 (815)
Q Consensus 280 ~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~ 356 (815)
+| +||++.++++++.+.... .....+.+.....++..+++.-.. .....++..
T Consensus 256 pGlRiG~ii~~~~l~~~~~~~~------------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~ 311 (405)
T PRK06207 256 SGYRLGVAFGSPAIIDRMEKLQ------------------------AIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQ 311 (405)
T ss_pred cccceEEEEcCHHHHHHHHHHH------------------------hHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 58 899999887766553221 001112233344444444432101 111225566
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhh
Q psy16512 357 ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 357 ~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~ 435 (815)
+.++++.+.|+++ +++.+..|.+ +.+++++++... ++..++.+.| .++||.+.+|..+...
T Consensus 312 ~~r~~l~~~L~~~------~~~~~~~p~g-------g~fl~~~l~~~~---~~~~~~~~~l~~~~gV~v~pG~~F~~~-- 373 (405)
T PRK06207 312 AIRDDLLRVLRGV------EGVFVRAPQA-------GSYLFPRLPRLA---VSLHDFVKILRLQAGVIVTPGTEFSPH-- 373 (405)
T ss_pred HHHHHHHHHHhcC------CCceecCCCe-------eEEEEEeCcccC---CCHHHHHHHHHHhcCEEEeCchHhCCC--
Confidence 6777888888776 5677665543 667777776321 2233466666 4789999988654211
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|||++. +.++++..++.|.+++.
T Consensus 374 -------------------------------~~~~~Ris~~~--~~~~l~~al~rl~~~l~ 401 (405)
T PRK06207 374 -------------------------------TADSIRLNFSQ--DHAAAVAAAERIAQLIE 401 (405)
T ss_pred -------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 13799999995 67888888888887663
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=221.70 Aligned_cols=308 Identities=13% Similarity=0.093 Sum_probs=198.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++.+++++|++. ++++++++.|+.+++. +. ++|| ||++...|++... +...+...| ...++..
T Consensus 49 ~~~le~~la~l~g~~~----~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~--- 119 (378)
T TIGR01329 49 RTALESLLAKLDKADR----AFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT--- 119 (378)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 7889999999999832 4555556679988776 54 8999 8888888877654 444455566 3344432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|+++|+ ++|+++++|++++.+.....+ .
T Consensus 120 d~~~le~-------~i~~~tklv~le~psnptg~v~dl~~I~~la~-----------~~g~~vivD~a~~~~~~~~~l-~ 180 (378)
T TIGR01329 120 DLDKVKA-------ALGPKTKLVLLESPTNPLQKIVDIRKISEMAH-----------AQNALVVVDNTMMSPLLCNPL-E 180 (378)
T ss_pred CHHHHHH-------hcCcCceEEEEECCCCCCCeeecHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-h
Confidence 4444444 33478999999999999999999999999999 899999999999877654444 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|++++|+||++++|.+ .|+++++++.. +++++....+ ....+....+.+.
T Consensus 181 ~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~------------------------G~~~~~~~a~l~~ 236 (378)
T TIGR01329 181 LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNST------------------------GSGLAPFDCWLLL 236 (378)
T ss_pred cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhc------------------------CCcCCHHHHHHHH
Confidence 5899999999999987877 78888866443 4443322101 1122222222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.++ ..+...+++....+..+.+.|++.+ | ..++|+++++... ....+++++|.+.+.. ...
T Consensus 237 ~~l---~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~----~~g~~~~~sf~~~~~~----~~~ 305 (378)
T TIGR01329 237 RGI---KTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQ----AKGAGSVLSFETGSVA----LSK 305 (378)
T ss_pred ccC---CCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHh----CCCcceEEEEEECCHH----HHH
Confidence 222 2232234666666666777776552 1 1122333333322 1346899999993221 123
Q ss_pred HHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
.+...|...+|.++.|.. ..++....+..++++...+. |..++.||+|+|..+.++-++.|-
T Consensus 306 ~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl~~dl~ 370 (378)
T TIGR01329 306 RLVEATKLFSITVSFGSVNSLISMPCFMSHASIPAEVREER---------------GLPEDLVRLSVGIEDVDDLISDLD 370 (378)
T ss_pred HHHHhCcCcccccCCCCCCceeeCCCccccccCCHHHHHhc---------------CCCCCeEEEEeccCCHHHHHHHHH
Confidence 588888899999999853 22333334455555443322 566789999999865555555555
Q ss_pred HHHH
Q psy16512 489 SFLN 492 (815)
Q Consensus 489 ~~L~ 492 (815)
++|+
T Consensus 371 ~al~ 374 (378)
T TIGR01329 371 IAFV 374 (378)
T ss_pred HHHH
Confidence 5554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=216.73 Aligned_cols=310 Identities=16% Similarity=0.095 Sum_probs=207.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.++++++++++.|.+ + +++++|+++|+.+++.++. ++|| ++++...|++.+. +...+...+ ...++ ..
T Consensus 54 ~~~L~~~lA~l~g~~--~--~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd---~~ 125 (386)
T PRK08045 54 RDVVQRALAELEGGA--G--AVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD---QG 125 (386)
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeC---CC
Confidence 889999999999963 3 8999999999999999887 8999 8888888886554 344444344 22232 23
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .+.++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 126 d~e~l~~-------~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~-----------~~g~~vivDeay~~~~~~~pl-~ 186 (386)
T PRK08045 126 DEQALRA-------ALAEKPKLVLVESPSNPLLRVVDIAKICHLAR-----------EAGAVSVVDNTFLSPALQNPL-A 186 (386)
T ss_pred CHHHHHH-------hcccCCeEEEEECCCCCCCEecCHHHHHHHHH-----------HcCCEEEEECCCCccccCCch-h
Confidence 4444444 33467999999999999999999999999999 889999999998877644333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+++++.+ .|+++.+ +++.+++.... .....+.+....+.+.
T Consensus 187 ~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~------------------------~~~g~~~~p~~~~l~~ 242 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWA------------------------NNIGVTGGAFDSYLLL 242 (386)
T ss_pred hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 5889999999999997876 5777664 34433331110 1112244445555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+ ..++++..+.+..+.+.|++. |.++ ++-|.-.+. ....+++++|.+.+. .+.
T Consensus 243 rgl~tl---~~R~~~~~~na~~la~~L~~~------p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~-~~~-- 310 (386)
T PRK08045 243 RGLRTL---VPRMELAQRNAQAIVKYLQTQ------PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQT-- 310 (386)
T ss_pred hhhccH---HHHHHHHHHHHHHHHHHHHcC------CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCc-HHH--
Confidence 565543 334577888888888888876 4443 332221110 124688999999642 111
Q ss_pred HHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|+-..+.++.|... .++....+..++++.... .|..++.||+|+|..+.++-++.
T Consensus 311 ~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dl~~d 375 (386)
T PRK08045 311 LRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAA---------------AGISETLLRISTGIEDGEDLIAD 375 (386)
T ss_pred HHHHHHhccceeEeccCCCCceeEeCCCCcccccCCHHHHHh---------------cCCCCCeEEEEeCcCCHHHHHHH
Confidence 123566666666666666422 223333344555443321 25667999999999877777777
Q ss_pred HHHHHHHH
Q psy16512 487 FLSFLNQY 494 (815)
Q Consensus 487 lv~~L~~~ 494 (815)
|.++|+++
T Consensus 376 l~~al~~~ 383 (386)
T PRK08045 376 LENGFRAA 383 (386)
T ss_pred HHHHHHHh
Confidence 77777654
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=219.05 Aligned_cols=291 Identities=11% Similarity=0.088 Sum_probs=191.3
Q ss_pred HHHHHHHHHhHcC------CCC-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYFN------TDS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.|+++++ +++ ++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+.......+... .++++
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~~--I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~ 147 (399)
T PRK07681 71 IQEFHEAVTEYYNNTHNVILNADKE--VLLLMGSQDGLVHLPMVYA-NPGDIILVPDPGYTAYETGIQMAGATSYYMPLK 147 (399)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCe--EEECCCcHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhcCCEEEEEecC
Confidence 6678888888774 455 45 9999999999999999998 8999 8898888877665544433322 55665
Q ss_pred chhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--
Q psy16512 178 VDDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-- 253 (815)
Q Consensus 178 ~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-- 253 (815)
.++. .+++.++++ +.+++++|++++|+||||.+++.+++.++++ .|+++++++|+|++++-
T Consensus 148 ~~~~~~~d~~~l~~~-------~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~--------~a~~~~~~iI~De~y~~~~ 212 (399)
T PRK07681 148 KENDFLPDLELIPEE-------IADKAKMMILNFPGNPVPAMAHEDFFKEVIA--------FAKKHNIIVVHDFAYAEFY 212 (399)
T ss_pred CCCCCcCCHHHHHHh-------ccccceEEEEeCCCCCcCcCCCHHHHHHHHH--------HHHHcCeEEEEeccchhhe
Confidence 4432 355555442 2357899999999999999999666555443 23389999999998752
Q ss_pred --CCCCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 254 --GSNMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 254 --g~~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
+.....+.. .+..+++.||+|.|| .+| +||++.++++++.+.... ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~~i~~~~l~~~~~~~~------------------------~~ 267 (399)
T PRK07681 213 FDGNKPISFLSVPGAKEVGVEINSLSKSYS-LAGSRIGYMIGNEEIVRALTQFK------------------------SN 267 (399)
T ss_pred eCCCCCCChhhCCCCcccEEEEeecccccC-CccceeEEEecCHHHHHHHHHHH------------------------hh
Confidence 111122111 134578889999999 558 899999887766553221 11
Q ss_pred cCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 326 EDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
...+.+.+...++..+++.-...-.. .+..++.++.+.+.|++. ++++..+.+ +.++++.++..
T Consensus 268 ~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~-------g~f~~~~l~~~- 332 (399)
T PRK07681 268 TDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRTF-------GWNVDKPAG-------SMFVWAEIPKG- 332 (399)
T ss_pred cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe-------eeEEEEECCCC-
Confidence 12234444555555555331111111 255677777888888775 566554432 67777777532
Q ss_pred CCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 405 GTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 405 ~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
.+..++.+.+ .++||.+++|..|... ..+++|++++ .+.++
T Consensus 333 ---~~~~~~~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~--~~~~~ 374 (399)
T PRK07681 333 ---WTSLSFAYALMDRANVVVTPGHAFGPH---------------------------------GEGFVRIALV--QDEEV 374 (399)
T ss_pred ---CCHHHHHHHHHHhCCEEEeCChhhCcC---------------------------------CCCeEEEEec--CCHHH
Confidence 1223455555 5599999988654210 1378999998 46899
Q ss_pred HHHHHHHHHH
Q psy16512 484 VKYFLSFLNQ 493 (815)
Q Consensus 484 i~~lv~~L~~ 493 (815)
++.+++.|++
T Consensus 375 ~~~~l~~l~~ 384 (399)
T PRK07681 375 LQQAVENIRN 384 (399)
T ss_pred HHHHHHHHHH
Confidence 9999999987
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=215.88 Aligned_cols=310 Identities=13% Similarity=0.053 Sum_probs=203.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
...++++++++.|.+ . +++++|+++|+.+++.++. ++|| ++++...|++.+... ......| ...++. .
T Consensus 55 ~~~Le~~lA~leg~e--~--ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~---~ 126 (388)
T PRK08861 55 RGLLEQTLSELESGK--G--AVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ---S 126 (388)
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC---C
Confidence 889999999999963 3 9999999999999999997 8999 888887787654433 3344444 333432 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .+.++|++|++++|+||||.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 127 d~e~l~~-------~i~~~tklV~lesP~NPtG~v~dl~~I~~la~-----------~~gi~vIvDea~~~~~~~~pl-~ 187 (388)
T PRK08861 127 DAAALDA-------ALAKKPKLILLETPSNPLVRVVDIAELCQKAK-----------AVGALVAVDNTFLTPVLQKPL-E 187 (388)
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCccccccCCCc-c
Confidence 3444443 33468999999999999999999999999999 889999999999887543333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||++++|.+ .|+++.++ ++.++++.. +......++....+.+.
T Consensus 188 ~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~------------------------~~~~G~~~~p~~a~l~~ 243 (388)
T PRK08861 188 LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWW------------------------GNCIGATGTPFDSYMTL 243 (388)
T ss_pred cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHH------------------------HhccCCCCChHHHHHHH
Confidence 5899999999999998866 46666654 333333211 01122344444444444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. .++++..+.+..+.+.|++. |.+. ++-|...+ .....+++++|.+.+ +.+.
T Consensus 244 rgl~Tl~---lR~~~~~~~a~~~a~~L~~~------p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~-~~~~-- 311 (388)
T PRK08861 244 RGIRTLG---ARMRVHEESAQQILAYLQTQ------SLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG-SFEQ-- 311 (388)
T ss_pred hcCCCHH---HHHHHHHHHHHHHHHHHHhC------CCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC-CHHH--
Confidence 5554433 34577777788888888876 4442 33332111 013468899999963 1111
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|....+.++.|..-+ ++....+.+++++..... |..++.||+|+|..+.++-++.
T Consensus 312 ~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~---------------gi~~~liRlsvGlE~~~dli~D 376 (388)
T PRK08861 312 LKVFVKALALFSLAESLGGVESLICHPASMTHRAMGEEALAEA---------------GVSQQLLRLSVGLEDAQDLIAD 376 (388)
T ss_pred HHHHHhcCCcceEccCCCCCcceeeCCCcccccccCHHHHHhc---------------CCCCCeEEEEeCcCCHHHHHHH
Confidence 1235566666666666664222 233333444544433222 5567899999998776666677
Q ss_pred HHHHHHHH
Q psy16512 487 FLSFLNQY 494 (815)
Q Consensus 487 lv~~L~~~ 494 (815)
|.++|+++
T Consensus 377 l~~al~~~ 384 (388)
T PRK08861 377 LDQAFAKA 384 (388)
T ss_pred HHHHHHHH
Confidence 77776653
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-22 Score=219.51 Aligned_cols=306 Identities=15% Similarity=0.148 Sum_probs=197.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++. . +++++| +.|+.+++. +. ++|| ||++...|++.+. +...+...| ...++..
T Consensus 56 ~~~le~~lA~l~g~~~-~--v~~~sG-~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 126 (390)
T PRK08064 56 REALEDIIAELEGGTK-G--FAFASG-MAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT--- 126 (390)
T ss_pred HHHHHHHHHHHhCCCC-e--EEECCH-HHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC---
Confidence 8899999999999874 3 666554 668887776 44 7899 9999988986554 555666667 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 127 d~~~l~~-------~l~~~tklV~l~~p~NptG~~~dl~~I~~la~-----------~~g~~vvvD~a~~~~~~~~~~-~ 187 (390)
T PRK08064 127 NLEEVAQ-------NIKPNTKLFYVETPSNPLLKVTDIRGVVKLAK-----------AIGCLTFVDNTFLTPLLQKPL-D 187 (390)
T ss_pred CHHHHHH-------hcCCCceEEEEECCCCCCcEeccHHHHHHHHH-----------HcCCEEEEECCCCcccccCch-h
Confidence 3334443 34578999999999999999999999999999 899999999998877543333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+++++.| .|++++++ ++.+.+++....++. ..+....+.+.
T Consensus 188 ~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~------------------------~~~~~~a~l~~ 243 (390)
T PRK08064 188 LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA------------------------VLGVQDCWLVL 243 (390)
T ss_pred hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHH
Confidence 6899999999999988877 48787764 455555433221111 11111222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------cc--CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------YS--NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~~--~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.+++. +...+++..+.+..+.+.|++.+ |+ .++|++++.... ....+++++|.+.+. +
T Consensus 244 ~gl~t---l~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~----~~g~gg~~sf~~~~~--~----- 309 (390)
T PRK08064 244 RGLKT---LHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQ----ATSAGAVLSFTLQSE--E----- 309 (390)
T ss_pred cccCc---HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHh----CCCcceEEEEEECCH--H-----
Confidence 33332 22344666777777777777652 11 122333333221 234688999999531 1
Q ss_pred HHHHhhhcCCc---EeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 412 EVQNLANLKKI---QLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 412 ~v~~~l~~~gI---~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
++.+.++..++ .++.|...+ ++....+..++.++... .|.+.+.||+|+|.+++++.|+
T Consensus 310 ~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~---------------~gi~~~liR~SvGle~~~dli~ 374 (390)
T PRK08064 310 AVRQFVSHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDE---------------RGITDGLLRLSVGLENVDDLIA 374 (390)
T ss_pred HHHHHHHhCCcceEcccCCCCcceeECCcccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHH
Confidence 35555566665 777773221 11111222333322111 1344689999999999999999
Q ss_pred HHHHHHHH
Q psy16512 486 YFLSFLNQ 493 (815)
Q Consensus 486 ~lv~~L~~ 493 (815)
.|.++|++
T Consensus 375 dl~~Al~~ 382 (390)
T PRK08064 375 DFEQALSY 382 (390)
T ss_pred HHHHHHHh
Confidence 99999987
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=212.61 Aligned_cols=343 Identities=14% Similarity=0.101 Sum_probs=218.1
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcc---c-ccchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGA---G-VYSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~---~-~~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~l 114 (815)
|.+..-|.+|.. ++..|+|..+. + ..++.+.+++.+.+.......+.+. ...... ..++++.+
T Consensus 2 ~~~~~~~~~~~~-------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~l 70 (360)
T TIGR00858 2 PLDRGPGPEVVR-------DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPL----HEELEEEL 70 (360)
T ss_pred CcccCCCCeEEE-------CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHH----HHHHHHHH
Confidence 556666777642 12223333222 2 2447788888776643211111111 111233 77899999
Q ss_pred HhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhh
Q psy16512 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQE 193 (815)
Q Consensus 115 a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~ 193 (815)
+++++.+ +. +++++|+ +++..++.++. ++|| |++....|+++.......+.. .+.+.. .+.+.+++.++
T Consensus 71 a~~~~~~-~~--i~~~~G~-~~~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~~g~~-~~~~~~---~d~~~l~~~~~- 140 (360)
T TIGR00858 71 AEWKGTE-AA--LLFSSGY-LANVGVISALV-GKGDLILSDALNHASLIDGCRLSGAR-VRRYRH---NDVEHLERLLE- 140 (360)
T ss_pred HHHhCCC-CE--EEECchH-HHHHHHHHHhC-CCCCEEEEEccccHHHHHHHHhcCCc-eEEecC---CCHHHHHHHHH-
Confidence 9999863 33 7777775 55556677776 8999 888888888776544432211 222221 34444544332
Q ss_pred hhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC---------CCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD---------LKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d---------l~~~~ 264 (815)
....+++++|++.+++|+||...|+++|.++|+ ++|+++|+|++++.+....+ +...+
T Consensus 141 --~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~ 207 (360)
T TIGR00858 141 --KNRGERRKLIVTDGVFSMDGDIAPLPQLVALAE-----------RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEP 207 (360)
T ss_pred --HcccCCCeEEEEeCCccCCCCCcCHHHHHHHHH-----------HcCcEEEEECcccccCcCCCCCchHHhcCCCccC
Confidence 111135799999999999999999999999999 89999999999876543211 22235
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
.++++.|+||+|+ +.| |+++.++++.+.+.+.... ....++.+...++++.+++++
T Consensus 208 ~~i~i~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~al~~ 263 (360)
T TIGR00858 208 VDIQVGTLSKALG-SYG-AYVAGSQALIDYLINRART----------------------LIFSTALPPAVAAAALAALEL 263 (360)
T ss_pred CcEEEEechhhhh-ccC-cEEEcCHHHHHHHHHhCcc----------------------ceecCCCCHHHHHHHHHHHHH
Confidence 6899999999999 667 8988887766544211100 001123444556677777877
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.......++..++++++.+.|+++ ++++..+ .++++++.++.. .+..++.+.|.++||.+
T Consensus 264 ~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~l~~~gI~v 324 (360)
T TIGR00858 264 IQEEPWRREKLLALIARLRAGLEAL-------GFTLMPS--------CTPIVPVIIGDN----ASALALAEELQQQGIFV 324 (360)
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHc-------CCccCCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCeeE
Confidence 6544223388999999999999887 4554422 256777776531 11235778888899999
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+..+..+ ...+++|+|++.+++.+|+++++++|+
T Consensus 325 ~~~~~~~~~--------------------------------~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 325 GAIRPPTVP--------------------------------AGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred eeeCCCCCC--------------------------------CCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 865322110 012589999999999999999999873
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=221.33 Aligned_cols=311 Identities=13% Similarity=0.091 Sum_probs=209.8
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccc----eEEcCch
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQ----IYSFSVD 179 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g----~v~~~~~ 179 (815)
.+.+.++++++++|++.++ +++|+|+|+++..++.++...+|+ |+++..+|+++...... +...| .++.+++
T Consensus 113 ~~~e~~~~la~l~g~~~~~--v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 190 (447)
T PRK00451 113 AIFEYQTMICELTGMDVAN--ASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG 190 (447)
T ss_pred HHHHHHHHHHHHhCCCcce--EEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC
Confidence 3677888999999998876 999999999999998887546788 88999999987765443 44445 4555554
Q ss_pred hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEE--ecccccCCCC
Q psy16512 180 DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLL--DAATYCGSNM 257 (815)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~viv--D~a~~~g~~~ 257 (815)
.+++++++++ ++++|++|+++++ |+||.+.|+++|.++|+ ++|+++++ |.. +.|...
T Consensus 191 -~~d~~~l~~~-------i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~-----------~~~~~~iv~~d~~-~~g~~~ 249 (447)
T PRK00451 191 -VTDLEALEAA-------VDDDTAAVVVQYP-NFFGVIEDLEEIAEIAH-----------AGGALFIVGVDPV-SLGLLK 249 (447)
T ss_pred -CCCHHHHHHh-------cCCCeEEEEEECC-CCCCeeCCHHHHHHHHH-----------HCCCEEEEEcChH-HhccCC
Confidence 5666666553 3578999999998 89999999999999999 89999988 544 344433
Q ss_pred CCCCCCCCcEEEEccccc-----cccCCcceEEEEecccccccCcccccCceEEEEecCCcccc--cccCccccccCCCC
Q psy16512 258 LDLKQHQPDFISISFYKM-----FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI--KKDGLFEKFEDGTV 330 (815)
Q Consensus 258 ~dl~~~~~D~vv~S~~K~-----~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~gt~ 330 (815)
. ...+++|++++|.||| +++| |+|++++++++++.+.+.+.++..... ....+.. .......+++.++.
T Consensus 250 ~-~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
T PRK00451 250 P-PGEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKLVRQMPGRLVGETVDAD--GKRGFVLTLQAREQHIRREKATS 325 (447)
T ss_pred C-cccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHHHhhCCCCEeeeecccC--CCeeeEeeccccccccccccccc
Confidence 2 3567899999998886 6656 899999999988877666555421110 0001110 01111234445555
Q ss_pred ChhH---H--HHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 331 NYLA---I--ISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 331 ~~~~---~--~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
++.. + .++..+++++...+.. + +++.++++++.+.|+++ ++++++... .-..+.+.++
T Consensus 326 ~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~-------~~~~~~v~~~-- 390 (447)
T PRK00451 326 NICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEI------GGVELFDGP-------FFNEFVVRLP-- 390 (447)
T ss_pred cccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhc------CCEEecCCC-------eEEEEEEecC--
Confidence 5432 2 2222344544333322 2 88999999999999988 678876211 0122233332
Q ss_pred CCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
.+..++.+.|.++||.+.. +....+ +. .+++|+|++.++|++
T Consensus 391 ----~~~~~~~~~L~~~gi~~~~~~~~~~~--------------------------------~~-~~~~rvs~~~~~t~e 433 (447)
T PRK00451 391 ----KPAEEVNEALLEKGILGGYDLGRYYP--------------------------------EL-GNHLLVCVTEKRTKE 433 (447)
T ss_pred ----CCHHHHHHHHHhcCCCCCcccccccC--------------------------------Cc-CCEEEEecCCCCCHH
Confidence 1234688888888887432 111000 11 268999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQYF 495 (815)
Q Consensus 483 di~~lv~~L~~~~ 495 (815)
|+++++++|++++
T Consensus 434 ~i~~l~~~L~~~~ 446 (447)
T PRK00451 434 DIDALVAALGEVL 446 (447)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-22 Score=216.91 Aligned_cols=278 Identities=12% Similarity=0.070 Sum_probs=187.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-c-EEEecCCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
..++|+++++++|+++++ |++|+|+++++.+++.++. .+| | +++..+.|+.+ ...++..| .++++.+.
T Consensus 62 ~~~Lr~aia~~~~~~~~~--I~it~Gs~~~i~~~~~~~~-~~g~d~vlv~~P~y~~y---~~~~~~~g~~v~~v~~~~~~ 135 (354)
T PRK04635 62 PPELINAYSAYAGVAPEQ--ILTSRGADEAIELLIRAFC-EPGQDSIACFGPTYGMY---AISAETFNVGVKALPLTADY 135 (354)
T ss_pred HHHHHHHHHHHhCcCHHH--EEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHH---HHHHHHcCCEEEEEecCCCC
Confidence 678999999999999988 9999999999999999998 788 7 88877666544 33444445 55555443
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--- 257 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--- 257 (815)
..+.+.++. . +++++|++++|+||||.++|.+++.++++. ..++++|+|+++.-....
T Consensus 136 ~~~~~~l~~--------~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~----------~~~~~vivDeay~~~~~~~s~ 196 (354)
T PRK04635 136 QLPLDYIEQ--------L-DGAKLVFICNPNNPTGTVIDRADIEQLIEM----------TPDAIVVVDEAYIEFCPEYSV 196 (354)
T ss_pred CCCHHHHHh--------c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHh----------CCCcEEEEeCchHhhccCcch
Confidence 444444321 1 479999999999999999999999999981 135999999996432211
Q ss_pred CCCC-CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 258 LDLK-QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 258 ~dl~-~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
.++. ..+.-+++.||||+|| ++| +||+++++++++.+..... ..+.+...
T Consensus 197 ~~~~~~~~~~iv~~S~SK~~~-l~GlRlG~~i~~~~~~~~l~~~~~--------------------------~~~~~~~~ 249 (354)
T PRK04635 197 ADLLASYPNLVVLRTLSKAFA-LAGARCGFTLANEELIEILMRVIA--------------------------PYPVPLPV 249 (354)
T ss_pred HHHHhhCCCEEEEechHHHhh-hhHHHHhhhhCCHHHHHHHHhhcC--------------------------CCCCCHHH
Confidence 1111 1122367789999999 667 7999999888765532210 11223333
Q ss_pred HHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 335 IISLKYGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 335 ~~al~~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
..++.+++.. ........++..+.++++.+.|+++ ++++++.+. ++++.+.+++ . .+
T Consensus 250 ~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~~~--------g~f~~~~~~~--~-----~~ 308 (354)
T PRK04635 250 SEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMY------GGAKVLEGN--------GNYVLAKFDD--V-----DA 308 (354)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC------CCceECCCC--------CcEEEEECCC--H-----HH
Confidence 3333333321 1111111255667778888999887 557766442 5666666542 1 24
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.++.+. .. + ..+++|||++ +.+|+++++++|+
T Consensus 309 ~~~~l~~~gv~v~~~~---~~-------------------------------~-~~~~lRis~~---~~e~~~~l~~al~ 350 (354)
T PRK04635 309 VFKALWDAGIVARAYK---DP-------------------------------R-LANCIRFSFS---NRAETDKLIGLIR 350 (354)
T ss_pred HHHHHHHCCEEEEECC---CC-------------------------------C-CCCeEEEEeC---CHHHHHHHHHHHH
Confidence 7788899999997531 10 0 1378999987 8999999999998
Q ss_pred HHH
Q psy16512 493 QYF 495 (815)
Q Consensus 493 ~~~ 495 (815)
+.+
T Consensus 351 ~~~ 353 (354)
T PRK04635 351 NQY 353 (354)
T ss_pred Hhc
Confidence 753
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=214.95 Aligned_cols=334 Identities=11% Similarity=0.022 Sum_probs=202.7
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccc-cCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIF-SHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIK 138 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~-~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~ 138 (815)
.+.|+.+... .+++.+.+++.+.+..... ..+.. ...... .+.+++.+++++|.+.+ ..+|++|+|+++++.
T Consensus 29 ~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~-~G~~~l----r~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~ 103 (389)
T PRK05957 29 TISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAV-QGIPPL----LEAITQKLQQDNGIELNNEQAIVVTAGSNMAFM 103 (389)
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCC-CCCHHH----HHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHH
Confidence 3455554443 3556666666554432110 01100 112223 66777788888887422 224999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
.++.++. .+|| |+++.+.|+.+....+..+... .++.+.+..++.+.+++++ .+++++|++++++||||.
T Consensus 104 ~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~klv~~~~p~NPtG~ 175 (389)
T PRK05957 104 NAILAIT-DPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAI-------TPKTRAIVTISPNNPTGV 175 (389)
T ss_pred HHHHHhc-CCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhc-------CcCceEEEEeCCCCCCCc
Confidence 9999886 8999 8888877766544333222111 4555544467777776643 467999999999999999
Q ss_pred ccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC----C--C-CCC-CCCCCcEEEEccccccccCCc--ce
Q psy16512 217 KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----N--M-LDL-KQHQPDFISISFYKMFGYPTG--LG 283 (815)
Q Consensus 217 ~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~--~-~dl-~~~~~D~vv~S~~K~~g~p~G--~G 283 (815)
++| +++|.++|+ ++|+++++|+++.--. . + ..+ ......+++.|++|.|| ++| +|
T Consensus 176 ~~~~~~~~~i~~~a~-----------~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG 243 (389)
T PRK05957 176 VYPEALLRAVNQICA-----------EHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG-FASWRIG 243 (389)
T ss_pred CcCHHHHHHHHHHHH-----------HcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhcc-CccceeE
Confidence 999 555666666 8999999999864111 0 1 111 11223478889999998 668 89
Q ss_pred EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKSFTNAFELSQYT 362 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~~~~~~~l~~~l 362 (815)
|+++++++++.+.... .....+.+.....++..+++.-. ......+++.+.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l 299 (389)
T PRK05957 244 YMVIPIHLLEAIKKIQ------------------------DTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQIL 299 (389)
T ss_pred EEecCHHHHHHHHHHH------------------------hhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 9999888776654321 11112333344444434443211 1111125567778888
Q ss_pred HHHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcC
Q psy16512 363 YFYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
.+.|+++ +++ .+..+.+ +.+++++++.. ++..++.+.| +++||.+.+|..|...
T Consensus 300 ~~~L~~~------~~~~~~~~~~g-------g~~~~~~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~------- 355 (389)
T PRK05957 300 LKSLGQL------QDRCTLHPANG-------AFYCFLKVNTD----LNDFELVKQLIREYRVAVIPGTTFGMK------- 355 (389)
T ss_pred HHHHHhc------CCCccccCCCe-------eEEEEEeCCCC----CChHHHHHHHHHHCCEEEccchhhCCC-------
Confidence 8888876 443 4443332 45566666431 2223466666 5789999998654321
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|||++.. +.+++++.++.|.+.+
T Consensus 356 --------------------------~~~~iRis~~~~-~~~~l~~~~~~l~~~~ 383 (389)
T PRK05957 356 --------------------------NGCYLRIAYGAL-QKATAKEGIERLVQGL 383 (389)
T ss_pred --------------------------CCCEEEEEEecC-CHHHHHHHHHHHHHHH
Confidence 036899999864 4666666666666554
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=213.75 Aligned_cols=309 Identities=15% Similarity=0.054 Sum_probs=199.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc-eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ-IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g-~v~~~~~~~~~ 183 (815)
.+++++.++++.|. ++ +++++|+++|+.+++.++. ++|| |+++...|++.+.. ..++...+ .+...+ ..+
T Consensus 53 ~~~le~~lA~l~g~--~~--v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d--~~d 125 (382)
T TIGR02080 53 RDLLQQALAELEGG--AG--AVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVD--QGD 125 (382)
T ss_pred HHHHHHHHHHHhCC--Cc--EEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEEC--CCC
Confidence 88899999999995 33 8999999999999999997 9999 88888888865543 33344444 222211 124
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.+++ .++++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+....++ ..
T Consensus 126 ~~~l~~-------ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~-----------~~g~~vvvD~a~~~~~~~~pl-~~ 186 (382)
T TIGR02080 126 EQALRA-------ALAQKPKLVLIETPSNPLLRVVDIAKICHLAK-----------AVGAVVVVDNTFLSPALQNPL-AL 186 (382)
T ss_pred HHHHHH-------hcCcCceEEEEECCCCCCCEecCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-hh
Confidence 444444 34467999999999999999999999999999 899999999999877543333 35
Q ss_pred CCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
++|+++.|++|+++++.| .|++++++ +..+++.... .....+.+....+.+..
T Consensus 187 gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~------------------------~~~g~~~sp~~a~l~lr 242 (382)
T TIGR02080 187 GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWA------------------------NNLGVTGGAFDSYLTLR 242 (382)
T ss_pred CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHH------------------------HccCCCCCHHHHHHHHc
Confidence 789999999999987777 57776654 4443332111 11122334444333334
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++ .+..++++..+.+..+.+.|++. |.++ ++-|.-.+ .....+++++|.+.+.. +. .
T Consensus 243 ~l~---tl~~R~~~~~~na~~~a~~L~~~------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~-~~--~ 310 (382)
T TIGR02080 243 GLR---TLVARMRLQQRNAQAIVEYLQTQ------PLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGE-QT--V 310 (382)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHhC------CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcH-HH--H
Confidence 443 33334577778888888888876 4443 33332111 01246889999996421 11 1
Q ss_pred HHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|+...+.++.|.. ..++....+..++++.... .|..++.||+|+|..+.++-++.|
T Consensus 311 ~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~liRlsvGlE~~~dl~~dl 375 (382)
T TIGR02080 311 RRFLGGLSLFTLAESLGGVESLIAHPATMTHAAMGPEARAE---------------AGISDTLLRLSVGLEDADDLIADL 375 (382)
T ss_pred HHHHHcCCcceEeccCCCCcceeECCCccCcccCCHHHHHh---------------cCCCcCeEEEEeccCCHHHHHHHH
Confidence 2466667766777776642 2233333344555443221 256678999999986544444444
Q ss_pred HHHHH
Q psy16512 488 LSFLN 492 (815)
Q Consensus 488 v~~L~ 492 (815)
-++|+
T Consensus 376 ~~al~ 380 (382)
T TIGR02080 376 EQGLR 380 (382)
T ss_pred HHHHh
Confidence 44443
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=228.33 Aligned_cols=313 Identities=12% Similarity=0.073 Sum_probs=220.2
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCch----hhHHHHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-e
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGAT----SAIKTVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-I 173 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t----~al~~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~ 173 (815)
.+.+.++|+++++++|+ +. |+|++|++ +|+++++.++...+|| +|++..+|.+........+..- .
T Consensus 567 ~~~~~~~r~~la~i~g~--~~--v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~ 642 (993)
T PLN02414 567 QEMFEDLGDLLCEITGF--DS--FSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVV 642 (993)
T ss_pred HHHHHHHHHHHHHHhCC--Ce--EEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEE
Confidence 34489999999999999 33 99999999 8999999999733365 8888899999876554432222 6
Q ss_pred EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 174 YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 174 v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++.+.++.+|+++++++++ ...++|++|++++++|.+|...|+++|++++| ++|+++++|+++..
T Consensus 643 v~~d~~G~vDle~L~~~i~----~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah-----------~~Galv~vDgAq~~ 707 (993)
T PLN02414 643 VGTDAKGNINIEELRKAAE----AHKDNLAALMVTYPSTHGVYEEGIDEICDIIH-----------DNGGQVYMDGANMN 707 (993)
T ss_pred eccCCCCCcCHHHHHHHHh----ccCCCeEEEEEECCCccccccchHHHHHHHHH-----------HcCCEEEEEecCHH
Confidence 7777778889988887553 11246899999999999999999999999999 89999999999988
Q ss_pred CC-CCCCCCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc-
Q psy16512 254 GS-NMLDLKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE- 326 (815)
Q Consensus 254 g~-~~~dl~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (815)
+. ...+...+++|++++|.||+|++|.| +|++++++.+...+ .++.... ...+ .+++.
T Consensus 708 a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~l----Pg~~v~~----~~~~-------~~r~~~ 772 (993)
T PLN02414 708 AQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL----PSHPVVP----TGGI-------PRPEKT 772 (993)
T ss_pred hccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccC----CCCcccc----CCCc-------ccccCC
Confidence 87 44556688999999999998886765 99999998665333 3321100 0000 01222
Q ss_pred --CCCCChh---HHHHHHHHHHHHHhhhhh-H----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 327 --DGTVNYL---AIISLKYGFDTMEKKRKS-F----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 327 --~gt~~~~---~~~al~~al~~l~~~~~~-~----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
.||.+.. +...+..++.++..+|.. + ++...+++|+.++|++. ..+...++.+ +-.+-.++
T Consensus 773 s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~------~~~~~~~~~~---~~~hEfv~ 843 (993)
T PLN02414 773 QPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGH------YPVLFRGKNG---TCAHEFII 843 (993)
T ss_pred CCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhh------CCccccCCCC---CeeeeEEE
Confidence 4665543 336677788888777643 2 67788899999999764 2333332221 00011222
Q ss_pred EEE-EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 397 NFN-LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 397 ~f~-~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
.+. +++.. .++..++.+.|.++||...+-++ + . .+.+||+.
T Consensus 844 ~~~~l~~~~--g~~~~di~krL~d~Gihapt~~~--p---------------------------------v-~~~lmiep 885 (993)
T PLN02414 844 DLRPFKNTA--GIEPEDVAKRLMDYGFHAPTMSW--P---------------------------------V-PGTLMIEP 885 (993)
T ss_pred ecccccccc--CCCHHHHHHHHHHcCcEEeeecc--c---------------------------------c-CCEEEEEe
Confidence 222 11111 13446788888899998654211 1 0 37899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+.+++++|+|+|+++|.++..+
T Consensus 886 TE~~skeelDrf~~al~~i~~e 907 (993)
T PLN02414 886 TESESKAELDRFCDALISIREE 907 (993)
T ss_pred eeeCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886544
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=215.11 Aligned_cols=316 Identities=10% Similarity=0.041 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH--HhhhccCCC-----cEEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV--SEYFEFNEG-----SFIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~--~~al~~~~g-----dvv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
+.+.++++++++++|.+... +..++|+++.+..+ +..+...+| .||++...|+++.......+... .+++
T Consensus 113 el~~~~~~~la~l~G~~~~~--l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~ 190 (481)
T PRK04366 113 ELMYELQEWLKEITGMDAVT--LQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPS 190 (481)
T ss_pred HHHHHHHHHHHHHhCCCceE--EEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeec
Confidence 33889999999999997432 44445555444432 332222444 28888999999876544332222 5566
Q ss_pred CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+.++..+++.+++++ +++|++|++++++ +||.+ .|+++|+++|+ ++|++++||+++..+.
T Consensus 191 ~~~~~~D~e~L~~~i-------~~~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~-----------~~gal~iVD~a~~~~~ 251 (481)
T PRK04366 191 NEDGLVDLEALKAAV-------GEDTAALMLTNPN-TLGLFERNILEIAEIVH-----------EAGGLLYYDGANLNAI 251 (481)
T ss_pred CCCCCcCHHHHHhhc-------ccCCeEEEEeCCC-CccccchHHHHHHHHHH-----------HcCCEEEEEecChhhh
Confidence 555667777776533 4679999999977 99987 58999999999 8999999999997653
Q ss_pred C-CCCCCCCCCcEEEEccccccccCC-----cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 256 N-MLDLKQHQPDFISISFYKMFGYPT-----GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 256 ~-~~dl~~~~~D~vv~S~~K~~g~p~-----G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
. .++...+++|++++|+||+||+|. |+|++++++++.+.+.+.+.+.....+..... +....+|++.++
T Consensus 252 ~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~-----r~~~i~r~~a~t 326 (481)
T PRK04366 252 LGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYD-----RPKSIGRVRAFY 326 (481)
T ss_pred cccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeeccc-----ccccCCCccccc
Confidence 2 346667899999999999998664 46899999988776654443311111111111 112234666666
Q ss_pred CChhHHHHHHHHHHHHHhhhhh----H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKS----F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~----~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
.+...+. .++.++..+|.. + ++...+++++.++|+++ ..+. + +. .....+.|......
T Consensus 327 ~~~l~~~---~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~------~~~~-~-~~------~~~~~~~~~~~~~~ 389 (481)
T PRK04366 327 GNFGVLV---RAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI------YDLP-Y-DR------PCMHEFVLSGKKLK 389 (481)
T ss_pred CchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh------Cccc-C-CC------CeeEEEEEECcccc
Confidence 5554433 444555544432 2 66788899999999875 1221 1 11 01122223221101
Q ss_pred CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
....+..++.+.|.++||.+....+ + ....+.+|+|++.++|++||
T Consensus 390 ~~g~~~~~v~~~L~~~Gi~~~~~~~--p--------------------------------~~~~~~l~is~~e~~t~edi 435 (481)
T PRK04366 390 ETGVRTLDIAKRLLDYGFHPPTIYF--P--------------------------------LIVPEALMIEPTETESKETL 435 (481)
T ss_pred ccCCCHHHHHHHHHHCCccCCcccc--c--------------------------------cccCCeEEEcccCCCCHHHH
Confidence 1112445789999999998652111 0 01136899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy16512 485 KYFLSFLNQYFLQ 497 (815)
Q Consensus 485 ~~lv~~L~~~~~~ 497 (815)
|+|+++|+++..+
T Consensus 436 d~l~~~l~~i~~~ 448 (481)
T PRK04366 436 DAFIAAMKQIAEE 448 (481)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=210.42 Aligned_cols=291 Identities=12% Similarity=0.116 Sum_probs=189.0
Q ss_pred HHHHHHHHHhHcC-CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--h
Q psy16512 107 IDQMRTKILQYFN-TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--A 181 (815)
Q Consensus 107 ~~~~r~~la~~~g-~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~ 181 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++. .+|| |++..+.|+++....+..+... .++++.++ .
T Consensus 64 ~~~lr~~ia~~~~~~~~~~--vi~t~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~ 140 (373)
T PRK07324 64 SPEFKEAVASLYQNVKPEN--ILQTNGATGANFLVLYALV-EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWL 140 (373)
T ss_pred CHHHHHHHHHHhcCCChhh--EEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCC
Confidence 6689999999885 67776 9999999999999999997 8999 8888777766544433332222 55665433 2
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC--
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-- 256 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-- 256 (815)
.+++.+++ .+.+++++|++++++||||.++| +++|+++|+ ++|+++++|+++..-..
T Consensus 141 ~d~~~l~~-------~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~-----------~~~~~ii~De~y~~l~~~~ 202 (373)
T PRK07324 141 PDLDELRR-------LVRPNTKLICINNANNPTGALMDRAYLEEIVEIAR-----------SVDAYVLSDEVYRPLDEDG 202 (373)
T ss_pred CCHHHHHH-------hCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHH-----------HCCCEEEEEccccccccCC
Confidence 45555544 33467999999999999999999 555666666 89999999998642110
Q ss_pred -CCCCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 257 -MLDLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 257 -~~dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
..++.. .+..+++.|++|.|| .+| +||++.++++++.+..... ....+.+.
T Consensus 203 ~~~s~~~~~~~~I~~~s~SK~~~-~~G~RiG~i~~~~~li~~~~~~~~------------------------~~~~~~~~ 257 (373)
T PRK07324 203 STPSIADLYEKGISTNSMSKTYS-LPGIRVGWIAANEEVIDILRKYRD------------------------YTMICAGV 257 (373)
T ss_pred CCCChhhccCCEEEEecchhhcC-CccceeEEEecCHHHHHHHHHHhC------------------------cEEecCCh
Confidence 111111 223477889999999 557 7999998777765533210 00112333
Q ss_pred hHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 333 LAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
+...++..+++.....-..+ +..++.++.+.+.|++. +++....|.+ +..+.+.++.. .+..
T Consensus 258 ~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~------~~~~~~~p~g-------g~~~~i~~~~~----~~~~ 320 (373)
T PRK07324 258 FDDMLASLALEHRDAILERNRKIVRTNLAILDEWVAKE------PRVSYVKPKA-------VSTSFVKLDVD----MPSE 320 (373)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcC------CCceEECCCc-------eEEEEEEeCCC----CCHH
Confidence 44444444554322221122 44555666677777665 5666665543 44444555421 1222
Q ss_pred HHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 412 EVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 412 ~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
++.+. +.++||.+.+|..+.. .+++|+|++. +++.++..++.
T Consensus 321 ~~~~~ll~~~gv~v~pg~~F~~-----------------------------------~~~iRis~~~--~~~~l~~~l~r 363 (373)
T PRK07324 321 DFCLKLLKETGVLLVPGNRFDL-----------------------------------EGHVRIGYCC--DTETLKKGLKK 363 (373)
T ss_pred HHHHHHHHhcCEEEECccccCC-----------------------------------CCeEEEEecC--CHHHHHHHHHH
Confidence 35544 5788999998864321 3789999984 57889999999
Q ss_pred HHHHHhh
Q psy16512 491 LNQYFLQ 497 (815)
Q Consensus 491 L~~~~~~ 497 (815)
|.+++.+
T Consensus 364 l~~~l~~ 370 (373)
T PRK07324 364 LSEFLRE 370 (373)
T ss_pred HHHHHHh
Confidence 8887643
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=213.18 Aligned_cols=294 Identities=13% Similarity=0.142 Sum_probs=188.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~ 181 (815)
..++++.+++++|.+. +++++++++++..++.++...+|| |+++..+|.+.+.....+...| .++.++++.
T Consensus 42 ~~~l~~~la~~~~~~~----~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 117 (353)
T PLN02721 42 ALRLEEEMAKIFGKEA----ALFVPSGTMGNLISVLVHCDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGT 117 (353)
T ss_pred HHHHHHHHHHHhCCce----eEEecCccHHHHHHHHHHccCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCC
Confidence 6789999999999854 566677777877777777623899 8888888876654211333344 344455555
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEecccccCCC-
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN- 256 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~- 256 (815)
++++.++++++.......+++++|++++ ++||+|..+|. ++|.++|+ ++|+++++|+++..+..
T Consensus 118 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~-----------~~g~~livD~a~~~~~~~ 186 (353)
T PLN02721 118 MDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAK-----------RHGLKLHIDGARIFNASV 186 (353)
T ss_pred cCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHH-----------HcCCEEEEEchhhhcchh
Confidence 6777777654311000115789999977 46789999885 56777777 89999999999765431
Q ss_pred --CCCCC--CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 257 --MLDLK--QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 257 --~~dl~--~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
..+.. ..++|+++.|+||+|++|.| |+++.++++++.+..... ...++++.
T Consensus 187 ~~~~~~~~~~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~ 241 (353)
T PLN02721 187 ALGVPVHRLVKAADSVSVCLSKGLGAPVG-SVIVGSKSFIRKAKRLRK------------------------TLGGGMRQ 241 (353)
T ss_pred hhCCCHHHHhhhCCEEEEecccccCCcee-eEEecCHHHHHhHHHHHH------------------------hcCCCeeh
Confidence 11211 22678999999999995533 345667766654432210 00111221
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 333 LAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.+..++ .++..+......+++..++++++.+.|+++ +++++ +.+. .+++++++++... ..+..
T Consensus 242 ~~~~~~-~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~ 305 (353)
T PLN02721 242 VGVLAA-AALVALQENVPKLEDDHKKAKLLAEGLNQI------KGLRVNVAAV-------ETNIVYFDITDGS--RITAE 305 (353)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcEEecCCc-------cceEEEEEccCCc--cccHH
Confidence 222221 122222222122345567788999999887 56654 3322 2567888876421 12234
Q ss_pred HHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.+.+.|.++||.++++. .+++|++++++++++|+++++++|
T Consensus 306 ~~~~~L~~~gi~v~~~~---------------------------------------~~~lR~~~~~~~~~~~i~~~~~~l 346 (353)
T PLN02721 306 KLCKSLEEHGVLLMPGN---------------------------------------SSRIRVVTHHQISDSDVQYTLSCF 346 (353)
T ss_pred HHHHHHHhCCcEEecCC---------------------------------------CceEEEEecCcCCHHHHHHHHHHH
Confidence 58888899999998651 268999999999999999999999
Q ss_pred HHHH
Q psy16512 492 NQYF 495 (815)
Q Consensus 492 ~~~~ 495 (815)
++++
T Consensus 347 ~~~~ 350 (353)
T PLN02721 347 QQAA 350 (353)
T ss_pred HHHh
Confidence 8865
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=207.48 Aligned_cols=337 Identities=12% Similarity=0.113 Sum_probs=239.0
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhc------cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec-CCch
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKEN------IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT-SGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~------~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t-~g~t 134 (815)
++|+-..+...+|++|++++.+.+.+. ...-.|+.....+. ++++++.+.+++++ +++|+++|. .|+|
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i----~~~~~~~L~~l~~~-p~~y~v~~l~Gsgt 81 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSI----IQKAEADLRELLDI-PDNYEVLFLQGGAS 81 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHH----HHHHHHHHHHHhCC-CCCceEEEEeCccH
Confidence 356667778889999999998876431 11233555666677 99999999999998 445667655 7899
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc---eEEc-Cchh---hhcchhhhhhhhhhhhhcCCCccEEE
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSF-SVDD---ARNMLNEFKESQENVENMRHSNSLFV 206 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~-~~~~---~~~~~~~~~~l~~~~~~~~~~t~lv~ 206 (815)
.++.++..++. .+|+ +++..... --..+.+.+++.| .+.. .... ..++++++ .++..+.|.
T Consensus 82 ~~~ea~~~nl~-~~~~~~l~~~~G~-fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~ 150 (365)
T PLN02452 82 TQFAAIPLNLC-KPGDKADFVVTGS-WSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE---------LTPDAKFVH 150 (365)
T ss_pred HHHHHHHHhcC-CCCCeEEEEECCH-HHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcC---------CCCCCcEEE
Confidence 99999999998 7777 54444221 1234677777777 2221 1222 22222221 135689999
Q ss_pred EecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 207 YPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 207 i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++|.++.||+. .|++++. +++++||+++++|..++|++++++|+ +|.||.+| |+|+|++
T Consensus 151 ~~hnETstGv~~~~~~~i~-----------------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lG-P~Gl~~v 210 (365)
T PLN02452 151 ICANETIHGVEFKDYPDVG-----------------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVG-PSGVTIV 210 (365)
T ss_pred ECCCCCCCcEecCcccccC-----------------CCeEEEECCccccCcccCHHHcCEEE--EecccccC-CCCeEEE
Confidence 99999999995 6665541 36899999999999999999888766 69999998 9999999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYT 362 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l 362 (815)
++++++++++.+... .+.++.... ......+|||+..++++.++++++.+. |... ++.+++++++
T Consensus 211 ~vr~~~l~~~~~~~~---------~~~~~~~~~---~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l 278 (365)
T PLN02452 211 IIRKDLIGNARPITP---------GMLDYKIHA---ENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLL 278 (365)
T ss_pred EEcHHHHhhcccCCC---------chhhHHHHH---hcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 999999876643211 011111000 112334799999999999999999875 4333 9999999999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
++.|++. +++ +.+.. ....++..+++|++++.. ....+.+.+.++|+..-.|..
T Consensus 279 ~~~l~~~------~G~--y~~~~-~~~~rs~~~vsF~~~~~~----~~~~f~~~~~~~g~~~~~G~r------------- 332 (365)
T PLN02452 279 YDAIDES------NGF--YVCPV-EKSVRSLMNVPFTLGGSE----LEAEFVKEAAKAGMVQLKGHR------------- 332 (365)
T ss_pred HHHHHhC------CCc--ccCCC-ChHHhCCeEEEEEcCCch----hHHHHHHHHHHCCCcccCCcc-------------
Confidence 9999987 455 22211 001244668999987642 345789999999999876632
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..|.+|+|+-...+.+++++|+++++++-.
T Consensus 333 ------------------------~~gg~R~s~yna~~~~~v~~L~~~m~~f~~ 362 (365)
T PLN02452 333 ------------------------SVGGMRASIYNAMPLAGVEKLVAFMKDFQA 362 (365)
T ss_pred ------------------------ccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence 013499999888899999999999999654
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=212.16 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=192.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCc-hhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSV-DDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~-~~~~ 182 (815)
..++|+.+++++|+++++ |++|+|+++++.+++.++. ++|| |++..+.|+.+.. .+...| .+.++. +...
T Consensus 69 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~l~-~~gd~vl~~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~ 142 (367)
T PRK02731 69 GFELKAALAEKFGVDPER--IILGNGSDEILELLARAYL-GPGDEVIYSEHGFAVYPI---AAQAVGAKPVEVPAKDYGH 142 (367)
T ss_pred HHHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHhc-CCCCEEEEecCCHHHHHH---HHHHcCCeEEEecccCCCC
Confidence 457999999999998877 9999999999999999987 8898 8888766654332 233445 333332 3345
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC------
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN------ 256 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~------ 256 (815)
+++.+++++ ++++++|++++++||||.++|.+++.++++. | ++++++++|+++.....
T Consensus 143 ~~~~l~~~~-------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~--------~-~~~~~li~De~y~~~~~~~~~~~ 206 (367)
T PRK02731 143 DLDAMLAAV-------TPRTRLVFIANPNNPTGTYLPAEEVERFLAG--------V-PPDVLVVLDEAYAEYVRRKDYED 206 (367)
T ss_pred CHHHHHHHh-------CCCCcEEEEeCCCCCCCcCCCHHHHHHHHHh--------C-CCCcEEEEECcHHHhccCcCccc
Confidence 666665533 4678999999999999999999999999982 2 25899999998653221
Q ss_pred CCCCC-CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 257 MLDLK-QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 257 ~~dl~-~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.++.. .....+++.|++|.|| ++| +||+++++++++.+.... .....+..
T Consensus 207 ~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~l~~~~~~~~~l~~~~--------------------------~~~~~~~~ 259 (367)
T PRK02731 207 GLELVAKFPNVVVTRTFSKAYG-LAGLRVGYGIAPPEIIDALNRVR--------------------------QPFNVNSL 259 (367)
T ss_pred HHHHHhhcCCEEEEeeehHhhc-CcccceeeeeCCHHHHHHHHHcc--------------------------CCCCCCHH
Confidence 11111 1123467779999998 556 699999887766553211 00122344
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEV 413 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v 413 (815)
+..++..+++.........++.+++++++.+.|++. ++.+. +. .++++++.++.. .+..++
T Consensus 260 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~-------~g~~~~i~~~~~----~~~~~~ 320 (367)
T PRK02731 260 ALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAEL-------GLEYI-PS-------VGNFILVDFDDG----KDAAEA 320 (367)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCccC-CC-------CceEEEEECCCC----CCHHHH
Confidence 444444444321111112266777788888888776 45544 22 267888887432 123457
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.|.++||.++++..+. ..+++|+|++ +.+++++++++|++
T Consensus 321 ~~~L~~~gI~v~~~~~~~-----------------------------------~~~~iRis~~---~~~e~~~l~~aL~~ 362 (367)
T PRK02731 321 YQALLKRGVIVRPVAGYG-----------------------------------LPNALRITIG---TEEENRRFLAALKE 362 (367)
T ss_pred HHHHHHCCEEEEeCCCCC-----------------------------------CCCeEEEecC---CHHHHHHHHHHHHH
Confidence 888889999998764321 0378999997 78999999999998
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 363 ~~~ 365 (367)
T PRK02731 363 FLA 365 (367)
T ss_pred HHh
Confidence 753
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=214.61 Aligned_cols=309 Identities=13% Similarity=0.078 Sum_probs=200.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|++.. + ++++++.|+..++.++. ++|| ||++...|++.... ...+...| ...++ ..
T Consensus 67 ~~~Le~~lA~l~G~~~~---~-~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd---~~ 138 (398)
T PRK07504 67 VDMFEKRMCALEGAEDA---R-ATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVD---GL 138 (398)
T ss_pred HHHHHHHHHHHhCCCee---e-EecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEEC---CC
Confidence 88999999999999764 3 46677889988787776 8999 88888777765443 34444556 33333 23
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 139 d~e~l~~-------ai~~~tklV~lesp~NptG~v~dl~~I~~la~-----------~~gi~lvvD~a~a~~~~~~~~-~ 199 (398)
T PRK07504 139 DLDNWEK-------AVRPNTKVFFLESPTNPTLEVIDIAAVAKIAN-----------QAGAKLVVDNVFATPLFQKPL-E 199 (398)
T ss_pred CHHHHHH-------hcCcCceEEEEECCCCCCcEecCHHHHHHHHH-----------HcCCEEEEECCccccccCCch-h
Confidence 4455544 34578999999999999999999999999999 899999999999876543322 4
Q ss_pred CCCcEEEEccccccccCC-cce-EEEEecccccc-cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPT-GLG-ALIVKQKSAHV-LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~-G~G-~l~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+++++. .+| +++.+++.+.+ ++... +.....++....+.+.
T Consensus 200 ~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~------------------------~~~g~~~s~~~A~~~l 255 (398)
T PRK07504 200 LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYF------------------------RHTGPSLSPFNAWTLL 255 (398)
T ss_pred hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHH------------------------HHhCCCCCHHHHHHHH
Confidence 589999999999998553 254 55555554421 21100 1111233333333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++. +...+++..+++..+.+.|++. |.+. ++-|...+.+ ...+++++|.+.+. .+.
T Consensus 256 ~~L~t---l~~R~~~~~~na~~la~~L~~~------p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-~~~-- 323 (398)
T PRK07504 256 KGLET---LPVRVRQQTESAAAIADFLAGH------PKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGG-KEA-- 323 (398)
T ss_pred hccch---HHHHHHHHHHHHHHHHHHHHcC------CCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCC-HHH--
Confidence 44443 4345577778888888999876 4443 3333211111 23488999999642 111
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|.-..+.++.|...+ ++....+.+++++..... |.+++.||+|+|..+.++-++.
T Consensus 324 ~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl~~d 388 (398)
T PRK07504 324 AFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAEL---------------GISEGFLRLSAGLEDTDDLIED 388 (398)
T ss_pred HHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhc---------------CCCCCeEEEEeccCCHHHHHHH
Confidence 1246666766667666664332 233333455555443322 5667899999998876666777
Q ss_pred HHHHHHH
Q psy16512 487 FLSFLNQ 493 (815)
Q Consensus 487 lv~~L~~ 493 (815)
|.++|++
T Consensus 389 l~~al~~ 395 (398)
T PRK07504 389 LAAALKK 395 (398)
T ss_pred HHHHHHh
Confidence 7777764
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=211.73 Aligned_cols=307 Identities=14% Similarity=0.094 Sum_probs=195.3
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDA 181 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~ 181 (815)
.++++++++++++|++. +++++|+++|+.+++.++. ++|| ||++...|++.+. +...+...| ...++.+
T Consensus 62 ~~~~le~~la~l~g~~~----~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 134 (390)
T PRK08133 62 TVTMFQERLAALEGAEA----CVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-- 134 (390)
T ss_pred HHHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC--
Confidence 38899999999999853 7888999999999999887 8999 8888888887665 334555566 4444432
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+.+.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+....++
T Consensus 135 -d~~~l~~-------~i~~~tklV~ie~p~NptG~v~dl~~I~~la~-----------~~gi~livD~t~~~~~~~~pl- 194 (390)
T PRK08133 135 -DLDAWRA-------AVRPNTKLFFLETPSNPLTELADIAALAEIAH-----------AAGALLVVDNCFCTPALQQPL- 194 (390)
T ss_pred -CHHHHHH-------hcCcCCeEEEEECCCCCCCCcCCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-
Confidence 3344444 33578999999999999999999999999999 899999999998766543333
Q ss_pred CCCCcEEEEccccccccCCc--c-eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--L-GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..++|+++.|+||+++ ++| + |+++.+++.++++.... +....+++....+.+
T Consensus 195 ~~g~Divv~S~sK~~~-g~g~~~GG~vv~~~~~~~~~~~~~------------------------~~~g~~~~~~~a~~~ 249 (390)
T PRK08133 195 KLGADVVIHSATKYLD-GQGRVLGGAVVGSKELMEEVFGFL------------------------RTAGPTLSPFNAWVF 249 (390)
T ss_pred hhCCcEEEeecceeec-CCcceEeEEEEcCHHHHHHHHHHH------------------------HHhCCCCCHHHHHHH
Confidence 4578999999999999 545 4 66666666544332111 111112333333323
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++ .+...+++..+.+..+.+.|++. |.++ ++-|...+ .....+++++|.+.+. .+.
T Consensus 250 l~gl~---tl~~R~~~~~~~a~~la~~L~~~------p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~-~~~- 318 (390)
T PRK08133 250 LKGLE---TLSLRMEAHSANALALAEWLEAH------PGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGG-REA- 318 (390)
T ss_pred Hcccc---hHHHHHHHHHHHHHHHHHHHHhC------CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCC-HHH-
Confidence 23333 33334466667788888888876 4443 22222100 0134688999999632 111
Q ss_pred CHHHHHHhhhcCCcEeccCc---cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGC---HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~---~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.+.|+-..+.++.|. .-.++....+..++++..... |..++.||+|+|..+.++-++
T Consensus 319 -~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl~~ 382 (390)
T PRK08133 319 -AWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAA---------------GITEGLIRVAVGLEDVADIKA 382 (390)
T ss_pred -HHHHHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhc---------------CCCCCeEEEEeCcCCHHHHHH
Confidence 1235556665556666552 112222223444544433221 556789999999865444444
Q ss_pred HHHHHH
Q psy16512 486 YFLSFL 491 (815)
Q Consensus 486 ~lv~~L 491 (815)
.|-++|
T Consensus 383 dl~~al 388 (390)
T PRK08133 383 DLARGL 388 (390)
T ss_pred HHHHHh
Confidence 444444
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=213.49 Aligned_cols=292 Identities=13% Similarity=0.078 Sum_probs=186.0
Q ss_pred HHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ |. ++++ .|++|+|+++++.+++.++. ++|| |++..+.|+.+....+.++... .++++.
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~-~vi~t~G~~~~l~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~ 146 (383)
T TIGR03540 69 MLAYRQAVADWYKRRFGVELDPET-EVLSLIGSKEGIAHIPLAFV-NPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKE 146 (383)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCC-eEEECCCcHHHHHHHHHHhC-CCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCc
Confidence 456777777765 44 3331 38999999999999999997 8999 8888988877655544433322 556654
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
++ .++++.++++ +.+++++|++++|+||||..++.+++.++++ .|+++++++|+|+++.-
T Consensus 147 ~~g~~~d~~~l~~~-------~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~--------~a~~~~~~ii~De~y~~l~~ 211 (383)
T TIGR03540 147 ENGFLPDFDAIPED-------IAKKAKLMFINYPNNPTGAVAPLKFFKELVE--------FAKEYNIIVCHDNAYSEITF 211 (383)
T ss_pred ccCCccCHHHHHhh-------ccccceEEEEeCCCCCcCccCCHHHHHHHHH--------HHHHcCEEEEEecchhhhcc
Confidence 32 2355565543 2357899999999999999999655544443 23389999999998752
Q ss_pred -CCCCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 254 -GSNMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 254 -g~~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
+..+.++..+ ...+++.||+|.|| .+| +||++.++++++.+.... ...
T Consensus 212 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~GlRiG~~i~~~~l~~~~~~~~------------------------~~~ 266 (383)
T TIGR03540 212 DGYKAPSFLEVDGAKDVGIEFHSLSKTYN-MTGWRIGMAVGNADLIAGLGKVK------------------------TNV 266 (383)
T ss_pred CCCCCcCcccCCCcccCEEEEEecccccC-CccceeeEEeCCHHHHHHHHHHH------------------------Hhc
Confidence 2222222221 24577889999998 668 899999887766553211 001
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.+.+...++..+++.....-.. .++..+.++.+.+.|++. ++.++.+.+ +.++++.++..
T Consensus 267 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~-------~~~~~~~l~~~-- 330 (383)
T TIGR03540 267 DSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKKI-------GIDVEKPKA-------TFYVWVPVPEG-- 330 (383)
T ss_pred ccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCEecCCCc-------ceEEEEECCCC--
Confidence 1122333444444444332121112 266677788888888876 566665442 45567776531
Q ss_pred CccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 406 TYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 406 ~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
++..++... +.++||.+++|..|... ..+++|+|++. +.+++
T Consensus 331 --~~~~~~~~~ll~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~l 373 (383)
T TIGR03540 331 --YTSAEFAARLLEETGVVVTPGVGFGEY---------------------------------GEGYIRISLTV--PDERL 373 (383)
T ss_pred --CCHHHHHHHHHHHCCEEEecchhhCcc---------------------------------CCCeEEEEecC--CHHHH
Confidence 222345555 46889999988655210 03789999983 56777
Q ss_pred HHHHHHHHH
Q psy16512 485 KYFLSFLNQ 493 (815)
Q Consensus 485 ~~lv~~L~~ 493 (815)
...++.|.+
T Consensus 374 ~~~l~~l~~ 382 (383)
T TIGR03540 374 EEAVARIKK 382 (383)
T ss_pred HHHHHHHhh
Confidence 777666653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=209.10 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=184.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~ 182 (815)
..++|+++++++|.++++ |++|+|+++++.+++. +. .+|++++..+.|+.+ ...++..| .++++.. ..
T Consensus 42 ~~~lr~~ia~~~~~~~~~--I~it~Gs~~~l~~~~~-~~-~~~~vv~~~P~y~~y---~~~~~~~G~~v~~vp~~~~-~~ 113 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKIK--VLIGPGLTHFIYRLLS-YI-NVGNIIIVEPNFNEY---KGYAFTHGIRISALPFNLI-NN 113 (332)
T ss_pred HHHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHH-Hh-CCCcEEEeCCChHHH---HHHHHHcCCeEEEEeCCcc-cC
Confidence 789999999999999887 9999999999999997 44 678877777555544 44444455 4555431 12
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--C--C-
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS--N--M- 257 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~--~--~- 257 (815)
+.+.++ ..++++|++++|+||||.+++.+++.++++ .|+++++++|+|+++.--. . +
T Consensus 114 ~~~~l~----------~~~~k~v~l~nP~NPTG~~~s~~~~~~l~~--------~a~~~~~~iI~DE~Y~~~~~~~~~~~ 175 (332)
T PRK06425 114 NPEILN----------NYNFDLIFIVSPDNPLGNLISRDSLLTISE--------ICRKKGALLFIDEAFIDFVPNRAEED 175 (332)
T ss_pred cHHHHh----------hcCCCEEEEeCCCCCcCCccCHHHHHHHHH--------HHHHcCCEEEEecchhccccccchhH
Confidence 222111 136899999999999999999888776665 3348899999998854211 1 0
Q ss_pred CCC-CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 258 LDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 258 ~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
..+ ...+.-+++.||+|.|| .+| +||+++++++++.+.... ...+.+..+
T Consensus 176 ~~~~~~~~~vi~~~SfSK~~~-l~GlRiGy~v~~~~li~~l~~~~--------------------------~~~~~~~~~ 228 (332)
T PRK06425 176 VLLNRSYGNVIIGRSLTKILG-IPSLRIGYIATDDYNMKISRKIT--------------------------EPWSVCDPA 228 (332)
T ss_pred HHHhccCCCEEEEeecHHhcC-CchhhheeeecCHHHHHHHHHcC--------------------------CCCccCHHH
Confidence 111 11234577789999999 558 799999988776553211 011222222
Q ss_pred HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHH
Q psy16512 335 IISLKYGFDTMEKKR-KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEV 413 (815)
Q Consensus 335 ~~al~~al~~l~~~~-~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v 413 (815)
..++. .... ...- ...+..++.++++.+.|+++ ++.++.+. .++++++.++ +. .++
T Consensus 229 ~~~l~-~~~~-~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~-------~g~f~~~~~~--~~-----~~~ 285 (332)
T PRK06425 229 IDFIR-SIDL-DYVAKHSLDIMENERSYLINNLEAM-------GFRAAGDP-------SANFITFMIP--DA-----HDF 285 (332)
T ss_pred HHHHH-Hhhh-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCEECCCC-------CceEEEEEcC--CH-----HHH
Confidence 22221 1111 1111 11266778888899999876 56665332 2677888765 22 347
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.|.++||.+++|..+.. ...+++|||++ +.+++++|+++|++
T Consensus 286 ~~~l~~~gi~v~~~~~f~~---------------------------------~~~~~iRis~~---~~~~~~~l~~al~~ 329 (332)
T PRK06425 286 YSYLLKNGILVRLLDDYEC---------------------------------LGEQYIRIAIR---RRSFNIKLVNALRN 329 (332)
T ss_pred HHHHHHCCeEEEECCCCCC---------------------------------CCCCEEEEEeC---CHHHHHHHHHHHHH
Confidence 7788789999998864321 01379999999 78999999999998
Q ss_pred HH
Q psy16512 494 YF 495 (815)
Q Consensus 494 ~~ 495 (815)
++
T Consensus 330 ~~ 331 (332)
T PRK06425 330 FL 331 (332)
T ss_pred Hh
Confidence 64
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-21 Score=212.22 Aligned_cols=307 Identities=11% Similarity=0.043 Sum_probs=197.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~ 183 (815)
++++++.+++++|.+. +++++|+++|+.+++.++. ++|| ||++...|++...+...+...| ...++. +
T Consensus 55 ~~~lE~~lA~l~g~~~----~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~----d 125 (385)
T PRK08574 55 LRPLEEALAKLEGGVD----ALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP----S 125 (385)
T ss_pred HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC----C
Confidence 8899999999999752 6667888999999999887 8999 8888889988776655444455 222222 2
Q ss_pred chhhhhhhhhhhhhcCC-CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
.+.+++ .+.+ +|++|++++++||||.++|+++|.++|+ ++|+++++|++++.|.....+ .
T Consensus 126 ~~~l~~-------~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~-----------~~gi~livD~t~a~~~~~~~l-~ 186 (385)
T PRK08574 126 TEDIIE-------AIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAK-----------ELGAILVVDNTFATPLLYRPL-R 186 (385)
T ss_pred HHHHHH-------hcCccCceEEEEECCCCCCCEecCHHHHHHHHH-----------HcCCEEEEECCCCccccCChh-h
Confidence 334443 3345 7999999999999999999999999999 899999999999887543333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|++++|++|++++|.+ .|+++++ +++.++++... +.....++....+.+.
T Consensus 187 ~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~------------------------~~~g~~~~p~~a~l~l 242 (385)
T PRK08574 187 HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWR------------------------RRLGTIMQPFEAYLVL 242 (385)
T ss_pred hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 6889999999999986754 3546664 44444332111 1112233333233333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC-----------CcccceEEEEEecCCCCc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES-----------KYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~-----------~~~~~i~~f~~~~~~~~~ 407 (815)
.+++ .+...+++..+++.++.+.|++. |.++ ++-|.-.+.+ ...|++++|.+.+. .+.
T Consensus 243 ~~l~---tL~~R~~~~~~na~~la~~L~~~------p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~-~~~ 312 (385)
T PRK08574 243 RGLK---TLEVRFERQCRNAMAIAEFLSEH------PKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGG-RDA 312 (385)
T ss_pred cccC---cHHHHHHHHHHHHHHHHHHHHcC------CCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCC-HHH
Confidence 3333 33334577777888888888876 4443 3333211110 13688999999642 111
Q ss_pred cCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
...+.+.|+-..+.++.|... .++....+..++++..... |..++.||+|+|..+.++-+
T Consensus 313 --~~~~~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dli 375 (385)
T PRK08574 313 --VLKFLRSLKLIKPSPSLGGVESLATYPVKSAASPIPEEDRKAL---------------GITEDLVRLSVGLEDVEDLI 375 (385)
T ss_pred --HHHHHHcCCcceEccCCCCCcceeeCCCcCCcccCCHHHHHhc---------------CCCCCeEEEEeccCCHHHHH
Confidence 123556666655666666322 2233333445555443222 56678999999987655555
Q ss_pred HHHHHHHH
Q psy16512 485 KYFLSFLN 492 (815)
Q Consensus 485 ~~lv~~L~ 492 (815)
+.|-++|.
T Consensus 376 ~dl~~al~ 383 (385)
T PRK08574 376 EDLDQALG 383 (385)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=208.91 Aligned_cols=318 Identities=13% Similarity=0.094 Sum_probs=206.1
Q ss_pred hhhhhccc-ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 64 YLDYTGAG-VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 64 yLd~a~~~-~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.|+.+... ..++.+.+++.+.+.. ..|..+. ..++|++|++++++++++ |++|+|+++++.+++
T Consensus 36 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~------------~~~Lr~~ia~~~~~~~~~--I~it~G~~~~l~~~~ 101 (369)
T PRK08153 36 RIGANESGFGPSPSVIAAMREAAAEIWKYGDPE------------NHDLRHALAAHHGVAPEN--IMVGEGIDGLLGLIV 101 (369)
T ss_pred EecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCc------------cHHHHHHHHHHhCCCHHH--EEEcCCHHHHHHHHH
Confidence 44544333 3456677776655432 1222222 568999999999998887 999999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
.++. ++|| +++..+.|+.+.......+... .++.+.+ ..+++.+.+.+ ...+++++++++|+||||.++|
T Consensus 102 ~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~~~~~~l~~~~------~~~~~~~i~l~~P~NPtG~~~~ 173 (369)
T PRK08153 102 RLYV-EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-REDLDALLDAA------RRENAPLVYLANPDNPMGSWHP 173 (369)
T ss_pred HHhc-CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-CCCHHHHHHHh------cccCCcEEEEeCCCCCCCCCCC
Confidence 9987 8999 8888888887765444432222 4555433 34554443321 1356899999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC-CCCcEEEEccccccccCCc--ceEEEEeccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAH 293 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~ 293 (815)
.+++.++++ .|+ +++++|+|+++..-. ....+.. .+..+++.||+|.|| .+| +||++.+++.++
T Consensus 174 ~~~l~~l~~--------~~~-~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~GlRiG~~v~~~~~~~ 243 (369)
T PRK08153 174 AADIVAFIE--------ALP-ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYG-LAGARVGYAIGAPGTIK 243 (369)
T ss_pred HHHHHHHHH--------hCC-CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhcc-CcchheeeeecCHHHHH
Confidence 999999987 233 489999998864211 1112211 123477889999999 447 799999887765
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccC
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+.... ...+.+.....++.++++.-.......+..++.++++.+.|++.
T Consensus 244 ~l~~~~--------------------------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~~---- 293 (369)
T PRK08153 244 AFDKVR--------------------------NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARAN---- 293 (369)
T ss_pred HHHHhh--------------------------cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence 442211 11245556666666666421111111256667777777777765
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec-cCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR-TGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~-~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
++..+ +. .++++.+.+... . .....+.+.|.++||.++ ++..
T Consensus 294 ---g~~~~-p~-------~~~f~~~~~~~~-~--~~a~~l~~~l~~~Gi~v~~p~~~----------------------- 336 (369)
T PRK08153 294 ---GLTPL-PS-------ATNFVAIDCGRD-G--AFARAVLDGLIARDIFVRMPGVA----------------------- 336 (369)
T ss_pred ---CCccC-CC-------cCcEEEEECCCC-c--ccHHHHHHHHHHCCeEEeeCCCC-----------------------
Confidence 44433 22 256666665321 1 122357777778999996 3210
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+|++ +.+|+++++++|++++.
T Consensus 337 -------------~~~~~iRis~~---~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 337 -------------PLDRCIRVSCG---PDEELDLFAEALPEALE 364 (369)
T ss_pred -------------CCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 00368999998 78999999999998764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=211.49 Aligned_cols=319 Identities=13% Similarity=0.078 Sum_probs=207.8
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+......++.+. ...... .+++++.++++++. ++ .++++++++++..++.++. ++||
T Consensus 54 ~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~la~~~~~-~~---~i~~~~g~~~~~~~l~~~~-~~gd 124 (385)
T PRK05958 54 RHPRLIAAAQQAARRYGAGSGGSRLVTGNSPA----HEALEEELAEWFGA-ER---ALLFSSGYAANLAVLTALA-GKGD 124 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCcccCCcHH----HHHHHHHHHHHhCC-Cc---EEEECcHHHHHHHHHHHhC-CCCC
Confidence 457788888877754222222211 112333 78899999999995 33 4444555667777777776 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
|++....|+++.......+.. .+.+.. .+.+.++++++ ...+++.++++.+++|++|...++++|.++|+
T Consensus 125 ~V~~~~~~~~~~~~~~~~~g~~-~~~~~~---~d~~~l~~~i~----~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~- 195 (385)
T PRK05958 125 LIVSDKLNHASLIDGARLSRAR-VRRYPH---NDVDALEALLA----KWRAGRALIVTESVFSMDGDLAPLAELVALAR- 195 (385)
T ss_pred EEEEeCccCHHHHHHHHhcCCc-eEEeCC---CCHHHHHHHHH----hccCCCeEEEEEecccCCCCcCCHHHHHHHHH-
Confidence 888888888876554432211 233321 23444444332 11124678888899999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++|+|++++.+.... .+.....++++.|+||+|+ +.| |+++.++++.+.+.....
T Consensus 196 ----------~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-g~~~~~~~~~~~~~~~~~ 263 (385)
T PRK05958 196 ----------RHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALG-SSG-AAVLGSETLIDYLINRAR 263 (385)
T ss_pred ----------HhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcc-cCC-cEEEcCHHHHHHHHHhCc
Confidence 8999999999997653221 2222234588899999998 667 888887766544321100
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
.....+..+...+.++.++++.+.......+++.++++++.+.|+++ ++++
T Consensus 264 ----------------------~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~ 314 (385)
T PRK05958 264 ----------------------PFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRAL-------GFQL 314 (385)
T ss_pred ----------------------cceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCCc
Confidence 00112234556666777788776654222388899999999999886 4555
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
+.+ .++++++.+++. .+..++.+.|.++||.++.+.....+
T Consensus 315 ~~~--------~~~~~~~~~~~~----~~~~~~~~~l~~~gI~v~~~~~~~~~--------------------------- 355 (385)
T PRK05958 315 MDS--------QSAIQPLIVGDN----ERALALAAALQEQGFWVGAIRPPTVP--------------------------- 355 (385)
T ss_pred CCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCceEecccCCCCC---------------------------
Confidence 433 267888877531 12235778888899999763211100
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+++|||++.+++++|+++++++|+++
T Consensus 356 -----~~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 356 -----AGTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred -----CCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 01268999999999999999999999875
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=210.51 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=201.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
++++++++++++|++. .++++++++|+.+++.++. ++|| ||++...|++... +...+...| ...++. .
T Consensus 66 ~~~le~~lA~l~g~~~----~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~---~ 137 (398)
T PRK08249 66 VQAFEEKVRILEGAEA----ATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET---G 137 (398)
T ss_pred HHHHHHHHHHHhCCCe----EEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC---C
Confidence 8899999999999753 4555666789999998887 8999 8888888887654 333455566 333332 3
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 138 d~e~l~~-------~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~-----------~~gi~livD~t~a~~~~~~~l-~ 198 (398)
T PRK08249 138 DHEQIEA-------EIAKGCDLLYLETPTNPTLKIVDIERLAAAAK-----------KVGALVVVDNTFATPINQNPL-A 198 (398)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCccCCHHHHHHHHH-----------HcCCEEEEECCcCccccCCch-h
Confidence 4555554 33468999999999999999999999999999 899999999998866543223 3
Q ss_pred CCCcEEEEccccccccCCc-c-eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG-L-GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|++|+++++.+ + |+++.++++++.++... ....++++....+.+..
T Consensus 199 ~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~------------------------~~~g~~~s~~~a~l~l~ 254 (398)
T PRK08249 199 LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYR------------------------EINGATMDPMSAYLILR 254 (398)
T ss_pred hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHHh
Confidence 5799999999999995432 3 66666666555442211 11122344444444444
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+ ...+++..+++..+.+.|++. |.++ ++-|.-.+. ....+++++|.+.+. .. ..
T Consensus 255 ~l~tL---~~R~~~~~~na~~la~~L~~~------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~-~~--~~ 322 (398)
T PRK08249 255 GMKTL---KLRVRQQQESAMALAKYLQTH------PKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGG-MD--TV 322 (398)
T ss_pred CcchH---HHHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCC-HH--HH
Confidence 44444 334577788888888899876 4443 333321110 124689999999642 11 12
Q ss_pred HHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|.-..+.++.|... .++....+..++++.... .|.+++.||+|+|..+.++-++.|
T Consensus 323 ~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dl~~dl 387 (398)
T PRK08249 323 KRLLPKLRYAHRAANLGAVETIYGPARTTSHVENTLEERAA---------------LGIPEGLVRISVGIEDTEDLIADL 387 (398)
T ss_pred HHHHHhCCcceEccCCCCCCceeeCCcccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHHH
Confidence 23556666655666666322 233333344555443322 156678999999987766666666
Q ss_pred HHHHHH
Q psy16512 488 LSFLNQ 493 (815)
Q Consensus 488 v~~L~~ 493 (815)
.++|+.
T Consensus 388 ~~al~~ 393 (398)
T PRK08249 388 EQAFAH 393 (398)
T ss_pred HHHHHH
Confidence 666654
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-21 Score=209.46 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=190.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-c-EEEecCCCcchhhHHHHhhccc----eEEcCc-h
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ----IYSFSV-D 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~-~ 179 (815)
..++|+.+++++|+++++ |++|+|+++++.+++.++. .+| + ++++.+.|+.+.. .++..| .++.+. +
T Consensus 61 ~~~lr~~ia~~~~~~~~~--I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~ 134 (364)
T PRK04781 61 PPGLRSALAALYGCAPEQ--LLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAV---CARLQNAPLVEVPLVDGA 134 (364)
T ss_pred HHHHHHHHHHHhCcChHH--EEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHH---HHHHcCCEEEEEecCCCc
Confidence 678999999999999887 9999999999999999997 788 6 7777765543333 333344 455432 2
Q ss_pred -h-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-
Q psy16512 180 -D-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN- 256 (815)
Q Consensus 180 -~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~- 256 (815)
+ ..+++++.+. ...+++++|++++++||||.++|.+++.++++. | ++++++|+|+++.--..
T Consensus 135 ~~~~~d~~~l~~~------~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~--------~-~~~~~iI~Deay~~f~~~ 199 (364)
T PRK04781 135 DGFHADVPAIVAA------ALASNAKLVFLCSPSNPAGSAIALDQIERALQA--------L-QGKALVVVDEAYGEFSDV 199 (364)
T ss_pred cCCCcCHHHHHHH------HhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHh--------C-CCCcEEEEeCcchhhcCC
Confidence 2 2344444321 124678999999999999999999999999882 2 34789999998652211
Q ss_pred --CCC-CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 257 --MLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 257 --~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
... +...+.-+++.||+|.|| .+| +||+++++++++.+.... ...+.+
T Consensus 200 ~~~~~~~~~~~~vi~~~SfSK~~g-l~GlRvGy~v~~~~l~~~l~~~~--------------------------~~~~~~ 252 (364)
T PRK04781 200 PSAVGLLARYDNLAVLRTLSKAHA-LAAARIGSLIANAELIAVLRRCQ--------------------------APYPVP 252 (364)
T ss_pred cchHHHHhhCCCEEEEecChhhcc-cccceeeeeeCCHHHHHHHHhcc--------------------------CCCCCC
Confidence 111 122234477889999999 557 899999988876653221 011233
Q ss_pred hhHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 332 YLAIISLKYGFDTM--EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 332 ~~~~~al~~al~~l--~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.++..++..+++.- ......++...+.++.+.+.|+++ +++..+.+.. ++++++.+++ .
T Consensus 253 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~p~~-------g~f~~~~~~~--~---- 313 (364)
T PRK04781 253 TPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQL------PGVRRVYPSQ-------GNFLLVRFDD--A---- 313 (364)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCeECCCC-------CcEEEEEcCC--H----
Confidence 34444433444321 111112255677788888999877 5653233332 7788877652 1
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
.++.+.|.++||.+++|..+. +. .+++||+++ +.++++++++
T Consensus 314 -~~~~~~l~~~gI~v~~~~~~~---------------------------------~~-~~~~Ris~~---~~~~~~~l~~ 355 (364)
T PRK04781 314 -EAAFQALLAAGVVVRDQRAAP---------------------------------RL-SDALRITLG---TPEQNDRVLA 355 (364)
T ss_pred -HHHHHHHHHCCeEEeeCCCCC---------------------------------CC-CCeEEEeCC---CHHHHHHHHH
Confidence 347788899999999874321 11 378999998 7899999999
Q ss_pred HHHHHH
Q psy16512 490 FLNQYF 495 (815)
Q Consensus 490 ~L~~~~ 495 (815)
+|+++.
T Consensus 356 al~~~~ 361 (364)
T PRK04781 356 ALQRTQ 361 (364)
T ss_pred HHHHHH
Confidence 998854
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=206.00 Aligned_cols=286 Identities=17% Similarity=0.199 Sum_probs=190.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc-
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM- 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~- 184 (815)
..++|+++++++++++++ |++|+|+++++.+++.++ .++++++..+.|+.+....+..+... .++.+.++.+.+
T Consensus 56 ~~~lr~~ia~~~~~~~~~--i~it~Ga~~~l~~~~~~~--~~~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 131 (354)
T PRK06358 56 YLELRKRIASFEQLDLEN--VILGNGATELIFNIVKVT--KPKKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN 131 (354)
T ss_pred HHHHHHHHHHHhCCChhh--EEECCCHHHHHHHHHHHh--CCCcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc
Confidence 678999999999999987 999999999999999986 44568888877765544333322222 555554332222
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCC--
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLD-- 259 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~d-- 259 (815)
..+.+ ....+++++++++|+||||..++.+++.++++ .|+++++++|+|+++.--. .+..
T Consensus 132 ~~~~~-------~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~--------~a~~~~~~ii~De~Y~~~~~~~~~~~~~ 196 (354)
T PRK06358 132 EIVLE-------EIKEEIDLVFLCNPNNPTGQLISKEEMKKILD--------KCEKRNIYLIIDEAFMDFLEENETISMI 196 (354)
T ss_pred HHHHH-------hhccCCCEEEEeCCCCCCCCccCHHHHHHHHH--------HHHhcCCEEEEeCcccccCCCccchhHH
Confidence 22222 22346899999999999999999776666554 3348999999998864211 0111
Q ss_pred --CCCCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 260 --LKQHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 260 --l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
+...+.-+++.|++|.|| .+| +||++++ +.+++.+.... ...+.+...
T Consensus 197 ~~~~~~~~vi~~~S~SK~~g-l~G~RiG~lv~~~~~~~~~~~~~~--------------------------~~~~~~~~~ 249 (354)
T PRK06358 197 NYLENFKNLIIIRAFTKFFA-IPGLRLGYGLTSNKNLAEKLLQMR--------------------------EPWSINTFA 249 (354)
T ss_pred HhccCCCCEEEEEechhhcc-CcchhheeeecCCHHHHHHHHHhC--------------------------CCCcchHHH
Confidence 111223477889999999 557 8999885 45544442211 122445555
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
..++..+++....+....+..++.++++.+.|+++ +++.++.+. ++++++++++. .++.
T Consensus 250 q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~~~--------g~f~~~~~~~~-------~~~~ 308 (354)
T PRK06358 250 DLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF------KGIKVYKPS--------VNFIFFKLEKP-------IDLR 308 (354)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC------CCcEEcCCc--------ceEEEEEcCch-------HHHH
Confidence 55665665321111112266677788888888876 577766543 56777776531 2477
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.+++|..+. +...+++||+++ +.++.++|+++|+++
T Consensus 309 ~~l~~~gI~v~~~~~f~---------------------------------~~~~~~iRls~~---~~~~~~~l~~~l~~~ 352 (354)
T PRK06358 309 KELLKKGILIRSCSNYR---------------------------------GLDENYYRVAVK---SREDNKKLLKALEVI 352 (354)
T ss_pred HHHHHCCeEEEECCCCC---------------------------------CCCCCEEEEEeC---CHHHHHHHHHHHHHH
Confidence 88888999999886541 111378999998 889999999999886
Q ss_pred H
Q psy16512 495 F 495 (815)
Q Consensus 495 ~ 495 (815)
+
T Consensus 353 ~ 353 (354)
T PRK06358 353 L 353 (354)
T ss_pred h
Confidence 5
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=206.48 Aligned_cols=309 Identities=11% Similarity=0.020 Sum_probs=201.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
...++++++++.|++. +++++|+++|+..++.++. ++|| ||++...|+....+. ..+...| ...++...
T Consensus 52 ~~~lE~~lA~l~g~~~----~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~-- 124 (377)
T TIGR01324 52 HFALQDAMCELEGGAG----CYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLI-- 124 (377)
T ss_pred HHHHHHHHHHHhCCCc----EEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCC--
Confidence 7889999999999753 8889999999999999997 9999 888887776654433 2334445 32333211
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
.+.+++ .++++|++|++++++||+|.+.|+++|+++|+ ++|+++++|++++.|.... ...
T Consensus 125 -~e~l~~-------~i~~~tklV~lesp~Np~g~~~dl~~I~~la~-----------~~g~~livD~t~a~g~~~~-pl~ 184 (377)
T TIGR01324 125 -GEDIAT-------LIQPNTKVLFLEAPSSITFEIQDIPAIAKAAR-----------NPGIVIMIDNTWAAGLLFK-PLE 184 (377)
T ss_pred -HHHHHH-------hcCCCceEEEEECCCCCCCcHHHHHHHHHHHH-----------HcCCEEEEECCCccccccC-ccc
Confidence 123333 34578999999999999999999999999999 8999999999999987633 335
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|++|+++++.+ .|+++.+++..+.+.... +....+++....+.+..
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~------------------------~~~G~~l~p~~a~~~~r 240 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHS------------------------YLMGQMVDADDAYTTLR 240 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHH------------------------HHhCCCCCHHHHHHHHh
Confidence 7899999999999997765 577777776554442111 11223445555555545
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+ +.++++..+.+..+.+.|++. |.+ +++-|.-.+. ....+++++|.+.+...+ ..
T Consensus 241 gl~tl---~~R~~~~~~~a~~la~~L~~~------p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~--~~ 309 (377)
T TIGR01324 241 GLRTL---GVRLKQHQESSLAIAKWLSEQ------PEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQK--QV 309 (377)
T ss_pred hhhhH---HHHHHHHHHHHHHHHHHHHhC------CCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHH--HH
Confidence 55543 334567777777777777776 333 3333321000 124589999999642211 12
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.|+..++.++.|...+--.+ .+..++...+. . -+..++.||+|+|..+.++-++.|.++
T Consensus 310 ~~~~~~l~~~~~~~slG~~~sl~~~-~~~~~~~~~~~-~--------------~~~~~~liR~svGlE~~~dl~~dl~~a 373 (377)
T TIGR01324 310 HAFLDHLQLFGLGYSWGGYESLALC-NQPELGHRPNI-K--------------RNLEGPLIRVHIGLENVDDLKADLKAG 373 (377)
T ss_pred HHHHHhCCcceEeccCCCccceeec-CCCCCCHHHHH-h--------------ccCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 3577888888888888753221100 00011111111 0 133457999999987666666666666
Q ss_pred HHH
Q psy16512 491 LNQ 493 (815)
Q Consensus 491 L~~ 493 (815)
|++
T Consensus 374 l~~ 376 (377)
T TIGR01324 374 FEA 376 (377)
T ss_pred Hhc
Confidence 653
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-20 Score=192.21 Aligned_cols=329 Identities=13% Similarity=0.128 Sum_probs=235.0
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
..++.+.+++.++.....|+.|. ...+. ++.+.++.++-.+.......|+|++|.--++.++++++. ++||
T Consensus 38 ~~pp~i~~Al~~rvdhGvfGY~~---~~~~~----~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~~gd~ 109 (388)
T COG1168 38 PTPPEIIEALRERVDHGVFGYPY---GSDEL----YAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-KPGDG 109 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCC---CCHHH----HHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-cCCCe
Confidence 35688999999988887788874 23345 778889999988876655569999999999999999999 9999
Q ss_pred EEEecCCCcchhhHHHHhhccc-eEEcC-chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHH
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQ-IYSFS-VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g-~v~~~-~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l 226 (815)
|++..+.|+.++.....-++.- ..|+. .++ .+|.+.+++++. +++.+++++|+|+||||.+..-+++.++
T Consensus 110 Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~------~~~vkl~iLCnPHNP~Grvwt~eeL~~i 183 (388)
T COG1168 110 VVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFV------DERVKLFILCNPHNPTGRVWTKEELRKI 183 (388)
T ss_pred eEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHh------cCCccEEEEeCCCCCCCccccHHHHHHH
Confidence 8888888888877766654443 33333 233 458888887553 4567999999999999999997776555
Q ss_pred hhccccccccccCCCCeEEEEeccccc----CCCCCCCCCC-----CCcEEEEccccccccCCc--ceEEEEecccc-cc
Q psy16512 227 HRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQH-----QPDFISISFYKMFGYPTG--LGALIVKQKSA-HV 294 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~-----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~ 294 (815)
+. .|++||+.||.|+.|+- |...+..... +.-+.+.|.+|+|. .+| ++++++.++.. .+
T Consensus 184 ~e--------lc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFN-laGL~~a~~Ii~n~~lr~~ 254 (388)
T COG1168 184 AE--------LCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFN-LAGLKCAYIIISNRELRAK 254 (388)
T ss_pred HH--------HHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeecccccc-chhhhheeEEecCHHHHHH
Confidence 55 44599999999999873 3222322222 23467778999999 657 67777776553 22
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
....+ .+...+.+|.+++.|..+|++.-..+-... ++++.+++++.+.+.+.-
T Consensus 255 ~~~~l-----------------------~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~--- 308 (388)
T COG1168 255 FLKRL-----------------------KRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHL--- 308 (388)
T ss_pred HHHHH-----------------------HHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 21111 122345788899999988887755543344 889999999999997642
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH-hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN-LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~-~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
|++++..|++ ..++++.+.... ++..++.+ ++.+.+|.+..|..+....
T Consensus 309 --P~v~v~~p~g-------TYL~WLD~r~l~---l~d~~l~~~ll~~akVal~~G~~FG~~g------------------ 358 (388)
T COG1168 309 --PGVKVTEPQG-------TYLAWLDCRELG---LDDSELAEFLLEEAKVALSPGSTFGEEG------------------ 358 (388)
T ss_pred --CCcEEecCCC-------ceeeeeeccccC---CChHHHHHHHHHhhcEeccCCCccCcCC------------------
Confidence 8999998875 456666655322 22223444 4588899999987654321
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.|++|+.++ .+.+-+++.++.|...++
T Consensus 359 ---------------~gf~RlN~a--cpr~~L~eal~ri~~al~ 385 (388)
T COG1168 359 ---------------SGFVRLNFA--CPRAILEEALERLKRALK 385 (388)
T ss_pred ---------------CceEEEecC--CCHHHHHHHHHHHHHHHh
Confidence 389999998 477888888888876654
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=209.49 Aligned_cols=312 Identities=11% Similarity=0.075 Sum_probs=207.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+ + +++++|+++|+..++.++. ++|| ||++...|++.... ...+...| ...++..
T Consensus 66 ~~~Le~~iA~~~g~~--~--~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~--- 137 (400)
T PRK06234 66 STEVENKLALLEGGE--A--AVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS--- 137 (400)
T ss_pred HHHHHHHHHHHhCCC--c--EEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC---
Confidence 889999999999974 2 6778888899999998887 8999 88888888776543 34445556 3344432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC--CeEEEEecccccCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~~~dl 260 (815)
+++++++ .++++|++|++++++||||.+.|+++|.++|+ ++ |+++++|++++.+.....+
T Consensus 138 d~e~l~~-------~i~~~tklI~iesP~NPtG~v~dl~~I~~la~-----------~~~~~i~livDea~~~~~~~~~l 199 (400)
T PRK06234 138 NLEEVRN-------ALKANTKVVYLETPANPTLKVTDIKAISNIAH-----------ENNKECLVFVDNTFCTPYIQRPL 199 (400)
T ss_pred CHHHHHH-------HhccCCeEEEEECCCCCCCCcCCHHHHHHHHH-----------hcCCCCEEEEECCCCchhcCCch
Confidence 4444444 33467999999999999999999999999999 65 9999999998877543333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|+++.|++|+++++.. .|+++.++++++.++.... ......+.+....+.+
T Consensus 200 -~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~----------------------~~~~g~~l~p~~a~l~ 256 (400)
T PRK06234 200 -QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGI----------------------KDMTGSVIGPFEAFLI 256 (400)
T ss_pred -hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHH----------------------HHhcCCCCCHHHHHHH
Confidence 44789999999999995532 4888888876655421100 0011123333333333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC---------CCcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE---------SKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++ .....+++..+++.++.+.|++. |.+ +++-|.-.+. ....+++++|.+.+.. +.
T Consensus 257 ~~~l~---tl~~r~~~~~~na~~~a~~L~~~------~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~-~~- 325 (400)
T PRK06234 257 IRGMK---TLQIRMEKHCKNAMKVAKFLESH------PAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGV-EE- 325 (400)
T ss_pred HhccC---cHHHHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcH-HH-
Confidence 34433 33334466778888888888876 333 2333321000 1245889999997421 11
Q ss_pred CHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.+.|...++.++.|... .++....+..+++++... .|.+++.||+|+|..+.++-++
T Consensus 326 -~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~l~R~svGlE~~~dl~~ 389 (400)
T PRK06234 326 -GKVVMNNVKLATLAVSLGDAETLIQHPASMTHSPYTAEERKE---------------AGISDGLVRLSVGLEDVDDIIA 389 (400)
T ss_pred -HHHHHHhCCcceEeccCCCCCceecCCccCCCCCCCHHHHHh---------------cCCCCCeEEEEeCCCCHHHHHH
Confidence 135778888888888887432 233333334444444322 2566799999999987777778
Q ss_pred HHHHHHHHH
Q psy16512 486 YFLSFLNQY 494 (815)
Q Consensus 486 ~lv~~L~~~ 494 (815)
.|.++|+.+
T Consensus 390 dl~~al~~~ 398 (400)
T PRK06234 390 DLKQALDLI 398 (400)
T ss_pred HHHHHHHHH
Confidence 888877764
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-21 Score=212.50 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=192.0
Q ss_pred HHHHHHHHHhHcC----C--CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYFN----T--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g----~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++++ . ++++ +|++|+|+++|+.+++.++. ++|| |++..+.|+.+..+.+..+... .++.+.
T Consensus 59 ~~~lr~~ia~~~~~~~g~~~~~~~-~i~~t~G~~~al~~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 136 (378)
T PRK07682 59 LLELRQEIAKYLKKRFAVSYDPND-EIIVTVGASQALDVAMRAII-NPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTL 136 (378)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCC-cEEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCC
Confidence 6677788887764 3 3431 39999999999999999997 8999 8888888876655554443222 444432
Q ss_pred --hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC
Q psy16512 179 --DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN 256 (815)
Q Consensus 179 --~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~ 256 (815)
+..++++.+++++ .++++++++++|+||||.+++.+++.++++ .|+++++++|+|+++.....
T Consensus 137 ~~~~~~d~~~l~~~~-------~~~~~~v~~~~p~NPtG~~~s~~~~~~l~~--------~~~~~~~~ii~De~y~~~~~ 201 (378)
T PRK07682 137 ENEFKVQPAQIEAAI-------TAKTKAILLCSPNNPTGAVLNKSELEEIAV--------IVEKHDLIVLSDEIYAELTY 201 (378)
T ss_pred ccCCCCCHHHHHhhc-------CcccEEEEEECCCCCcCcCcCHHHHHHHHH--------HHHHcCcEEEEehhhhhccc
Confidence 2345666665533 457899999999999999998665544444 33389999999998653221
Q ss_pred ---C---CCCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 257 ---M---LDLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 257 ---~---~dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+ ..+.. ....+++.||+|.|+ .+| +||+++++++++.+.... .+..
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlR~G~~~~~~~~i~~l~~~~------------------------~~~~ 256 (378)
T PRK07682 202 DEAYTSFASIKGMRERTILISGFSKGFA-MTGWRLGFIAAPVYFSEAMLKIH------------------------QYSM 256 (378)
T ss_pred CCCCCChhhcccccCCEEEEecCccccc-ChhhhhhhhhcCHHHHHHHHHHH------------------------Hhhc
Confidence 1 11111 134688899999999 558 899999988876653321 0111
Q ss_pred CCCChhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 328 GTVNYLAIISLKYGFDTME-KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~-~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.+.....++..+++... ......++.++.++++.+.|+++ ++.+..|.+ +.+++..+....
T Consensus 257 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~p~g-------~~~~~~~~~~~~-- 320 (378)
T PRK07682 257 MCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNEI-------GLTCHVPGG-------AFYAFPSISSTG-- 320 (378)
T ss_pred cCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHC-------CCccCCCCe-------eEEEEEeccCCC--
Confidence 2344455555555553211 11111266788888888999876 555554432 334444443211
Q ss_pred ccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 407 YYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 407 ~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
.+..++.+.+ .++||.+++|..|... ..+++|+|++. +.++++
T Consensus 321 -~~~~~~~~~ll~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~--~~~~l~ 364 (378)
T PRK07682 321 -LSSEEFAEQLLLEEKVAVVPGSVFGES---------------------------------GEGFIRCSYAT--SLEQLQ 364 (378)
T ss_pred -CCHHHHHHHHHHhCCEEEcCchhhCcC---------------------------------CCCeEEEEeCC--CHHHHH
Confidence 1223466554 6789999988654211 13799999984 689999
Q ss_pred HHHHHHHHHHh
Q psy16512 486 YFLSFLNQYFL 496 (815)
Q Consensus 486 ~lv~~L~~~~~ 496 (815)
..++.|++++.
T Consensus 365 ~~l~~l~~~l~ 375 (378)
T PRK07682 365 EAMKRMKRFVE 375 (378)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=212.41 Aligned_cols=334 Identities=13% Similarity=0.090 Sum_probs=205.0
Q ss_pred hhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t 134 (815)
.++|+.+.... .++.+.+++.+.+...... +..... ..++|+.+++++ | +++++ |++|+|++
T Consensus 32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--i~~t~G~~ 100 (388)
T PRK07337 32 IIHMGIGEPDFTAPEPVVEAAARALRRGVTQ-----YTSALG----LAPLREAIAAWYARRFGLDVAPER--IVVTAGAS 100 (388)
T ss_pred EEEeCCcCCCCCCCHHHHHHHHHHHhcCCCC-----CCCCCC----CHHHHHHHHHHHHHHhCCCCChHh--EEEecCcH
Confidence 34555554443 3456666665544321111 111122 567888888876 4 46665 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+.+++.++. ++|| |+++.++|+++..+....+... .++++.+ ..++++.+++ .+.+++++|+++++
T Consensus 101 ~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~v~l~~p 172 (388)
T PRK07337 101 AALLLACLALV-ERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEA-------AWGERTRGVLLASP 172 (388)
T ss_pred HHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHh-------hcCccceEEEEECC
Confidence 99999999997 8999 9999988887765554433222 5566543 2455555554 33467899999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc-CCC--CCCCCCCCCc-EEEEccccccccCCc--ceE
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSN--MLDLKQHQPD-FISISFYKMFGYPTG--LGA 284 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~--~~dl~~~~~D-~vv~S~~K~~g~p~G--~G~ 284 (815)
+||||.+++.+++.++++ .|+++++++++|+++.. ... +.....++.+ +++.|++|.|| .+| +||
T Consensus 173 ~NPtG~~~~~~~~~~i~~--------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~G~RiG~ 243 (388)
T PRK07337 173 SNPTGTSIAPDELRRIVE--------AVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFN-MTGWRLGW 243 (388)
T ss_pred CCCCCcCcCHHHHHHHHH--------HHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcC-Cchhheee
Confidence 999999999766555544 23389999999987542 111 1222223344 45679999998 557 899
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH--HHhhhhhHHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT--MEKKRKSFTNAFELSQYT 362 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~--l~~~~~~~~~~~~l~~~l 362 (815)
+++++++++.+..... ....+.+.+...++..++.. ........+++++.++++
T Consensus 244 ~~~~~~l~~~l~~~~~------------------------~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 299 (388)
T PRK07337 244 LVVPEALVGTFEKLAQ------------------------NLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFI 299 (388)
T ss_pred eecCHHHHHHHHHHHH------------------------HhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence 9998877655532210 01113344444444444431 111211125666777788
Q ss_pred HHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEEecCC-CCccCHHHHH-HhhhcCCcEeccCccCCchhhhhhc
Q psy16512 363 YFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFL 439 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~ 439 (815)
.+.|+++ ++.+ ..|. .+.++++.++... ....+..++. +++.++||.+.+|..|...
T Consensus 300 ~~~L~~~-------~~~~~~~p~-------~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~------ 359 (388)
T PRK07337 300 VPALESL-------GFKVPVMPD-------GAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPH------ 359 (388)
T ss_pred HHHHHhc-------CCccccCCC-------eeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCC------
Confidence 8888775 3332 2233 2677777776411 0112223455 4467899999988654211
Q ss_pred CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 440 g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+++|++++. +++++...++.|.+++
T Consensus 360 --------------------------~~~~~~Ri~~~~--~~~~l~~~l~rl~~~l 387 (388)
T PRK07337 360 --------------------------APRDYIRLSYAT--SMSRLEEAVARLGKLF 387 (388)
T ss_pred --------------------------CCCCEEEEEecC--CHHHHHHHHHHHHHHh
Confidence 013799999995 5788888888877653
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=210.31 Aligned_cols=309 Identities=13% Similarity=0.063 Sum_probs=199.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++. .++++|+++|+.+++.++. ++|| +|++...|+.... +...+...| .+.++. .
T Consensus 62 ~~~Le~~lA~l~g~~~----~v~~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~---~ 133 (405)
T PRK08776 62 RDLLGEALAELEGGAG----GVITATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL---T 133 (405)
T ss_pred HHHHHHHHHHHhCCCc----eEEEcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC---C
Confidence 7789999999999743 3455556799999999997 9999 8887777776443 333344444 344432 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .++++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 134 d~~~l~~-------~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~-----------~~gi~vIvD~a~a~~~~~~pl-~ 194 (405)
T PRK08776 134 DPRSLAD-------ALAQSPKLVLIETPSNPLLRITDLRFVIEAAH-----------KVGALTVVDNTFLSPALQKPL-E 194 (405)
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCccCCHHHHHHHHH-----------HcCCEEEEECCCcccccCCcc-c
Confidence 3444444 33467999999999999999999999999999 899999999999877643333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+++++.+ .|+++.++ ++.+++.... .....+.+....+.+.
T Consensus 195 ~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~------------------------~~~g~~~s~~~a~l~~ 250 (405)
T PRK08776 195 FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWA------------------------NALGLTGSPFDAFLTL 250 (405)
T ss_pred ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 6899999999999997765 47776654 3333331110 0111234445555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. ..+++..+.+..+.+.|++. |.+. ++-|...+ .....+++++|.+.+. .+.
T Consensus 251 ~gl~tl~---~r~~~~~~na~~la~~L~~~------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~-~~~-- 318 (405)
T PRK08776 251 RGLRTLD---ARLRVHQENADAIAALLDGH------AAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGG-EAA-- 318 (405)
T ss_pred hhhCcHH---HHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCC-HHH--
Confidence 5555443 24577888888888888877 4443 33232110 0134688999999642 111
Q ss_pred HHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|....+.++.|... .++....+..++++.... .|.+++.||+|+|..+.++-++.
T Consensus 319 ~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dli~d 383 (405)
T PRK08776 319 VRAFVDGLRYFTLAESLGGVESLIAHPASMTHAAMTAEARAA---------------AGISDGLLRLSVGIESAEDLLID 383 (405)
T ss_pred HHHHHHhCCcceEccCCCCCceEEECCcccccccCCHHHHHh---------------cCCCCCeEEEEeCcCCHHHHHHH
Confidence 123556666555566666322 233333344555543322 15567899999998776666666
Q ss_pred HHHHHHH
Q psy16512 487 FLSFLNQ 493 (815)
Q Consensus 487 lv~~L~~ 493 (815)
|-++|++
T Consensus 384 l~~al~~ 390 (405)
T PRK08776 384 LRAGLAR 390 (405)
T ss_pred HHHHHHH
Confidence 6666654
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=208.43 Aligned_cols=309 Identities=16% Similarity=0.066 Sum_probs=193.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCc-chhhHHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHT-SVLGMRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~-s~~~~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++.. +++++| ++|+..++.++. ++|| ||++...|+ ++..+...+...| ...++.+.
T Consensus 47 ~~~L~~~lA~l~g~~~~---v~~~sG-~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~-- 119 (376)
T PRK06460 47 VLELTKKIVELENAEMG---VAFSSG-MGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS-- 119 (376)
T ss_pred HHHHHHHHHHHhCCCcE---EEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC--
Confidence 88999999999998653 677555 689999999987 8999 777766654 4444555666666 32232211
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
...+++ ...++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 120 -~~~l~~-------~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~-----------~~g~~vivDea~~~~~~~~~l-~ 179 (376)
T PRK06460 120 -DNIIEK-------AKSKRYDVVFVENITNPLLRVVDITELSKVCK-----------ENGSILIVDATFSTPINQKPL-E 179 (376)
T ss_pred -HHHHHH-------hcCCCceEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCcCccccCChh-h
Confidence 011111 22467999999999999999999999999999 899999999998766432222 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.++|+++.|+||+|+++.+ .|+++.++++++.++.... ....+.+....+.+..
T Consensus 180 ~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~------------------------~~g~~~~~~~a~~~l~ 235 (376)
T PRK06460 180 LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRR------------------------TLGTSLDPHAAYLTLR 235 (376)
T ss_pred cCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHH------------------------hcCCCCCHHHHHHHHh
Confidence 4689999999999985544 6888888776655532210 1111222222222223
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+. ..+++..+.+.++.+.|++. |.+ +++-|.-.+ .....|++++|.+.+.. + ..
T Consensus 236 ~~~~l~---~r~~~~~~n~~~l~~~L~~~------p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~-~--~~ 303 (376)
T PRK06460 236 GIKTLK---IRMDVINRNAEQIAEFLEGH------PKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQ-E--SA 303 (376)
T ss_pred chhhHH---HHHHHHHHHHHHHHHHHHcC------CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcH-H--HH
Confidence 444433 23478888899999998876 333 233221100 01346899999986421 1 11
Q ss_pred HHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|.-..+.++.|.. ..++....+.+++++.... .|..++.||+|+|..+.++-++.|
T Consensus 304 ~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dl~~dl 368 (376)
T PRK06460 304 LKVMKSLKLIIPAQTLGGVNSVISHPATMSHRTLSLEERKI---------------VGITDSLLRLSVGIEDVNDLIEDL 368 (376)
T ss_pred HHHHHhCCcceeccCCCCCceEEeCccccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHHH
Confidence 2345555544445555421 1122222334444433322 256678999999987666666666
Q ss_pred HHHHHH
Q psy16512 488 LSFLNQ 493 (815)
Q Consensus 488 v~~L~~ 493 (815)
.++|.+
T Consensus 369 ~~al~~ 374 (376)
T PRK06460 369 DRALST 374 (376)
T ss_pred HHHHHh
Confidence 666654
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=209.97 Aligned_cols=299 Identities=12% Similarity=0.067 Sum_probs=189.9
Q ss_pred HHHHHHHHHhHc----C--CCCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N--TDSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | ++++ + |++|+|+++|+.+++.++. ++|| |++..+.|+.+..+.+..+... .++++
T Consensus 65 ~~~lr~~ia~~~~~~~g~~~~~~~~--i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~ 141 (387)
T PRK08912 65 LPELRQAVAAHYARFQGLDLDPETE--VMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLE 141 (387)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCccc--EEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecC
Confidence 456777777664 4 4454 5 9999999999999999987 8899 8888888876655444333222 45665
Q ss_pred c-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 178 V-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 178 ~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
. +..++++.+++. ..++++++++++++||||.++|.+++.++++ .|+++++++|+|+++..
T Consensus 142 ~~~~~~~~~~l~~~-------~~~~~~~v~l~~p~NPtG~~~s~~~~~~i~~--------~~~~~~~~ii~De~y~~~~~ 206 (387)
T PRK08912 142 PPHWRLPRAALAAA-------FSPRTKAVLLNNPLNPAGKVFPREELALLAE--------FCQRHDAVAICDEVWEHVVF 206 (387)
T ss_pred cccCcCCHHHHHHH-------hCccceEEEEeCCCCCcCcccCHHHHHHHHH--------HHHHCCeEEEEhhhhhhccc
Confidence 3 334566666543 3467899999999999999999766544443 23389999999988642
Q ss_pred -CCC--C-CCCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 254 -GSN--M-LDLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 254 -g~~--~-~dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
+.. + ..+.. .+.++++.|++|.|| .+| +||+++++++++.+.... ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~~~~l~~~~------------------------~~~ 261 (387)
T PRK08912 207 DGRRHIPLMTLPGMRERTVKIGSAGKIFS-LTGWKVGFVCAAPPLLRVLAKAH------------------------QFL 261 (387)
T ss_pred CCCCCcChhhCCCccCceEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHH------------------------hhc
Confidence 111 1 11111 245689999999999 668 899999888766553211 000
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.+.....++..++......-.. .++..+.++++.+.|++. ++.++.+.+ +.++++.++....
T Consensus 262 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~g-------~~~l~~~l~~~~~ 327 (387)
T PRK08912 262 TFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRRI-------GFPVLPSQG-------TYFLTVDLAPLGL 327 (387)
T ss_pred cccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc-------ceEEEecccccCC
Confidence 1122222333333443211111112 267778888888888876 566665432 5566777654110
Q ss_pred CccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 406 TYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 406 ~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
..+..++.+.| .++||.+.+|..+... ....+++|++++. .++.+
T Consensus 328 -~~~~~~~~~~l~~~~gV~v~pg~~f~~~-------------------------------~~~~~~iRl~~~~--~~~~l 373 (387)
T PRK08912 328 -AEDDVAFCRRLVEEAGVAAIPVSAFYEE-------------------------------DPVTSVVRFCFAK--RDATL 373 (387)
T ss_pred -CCCHHHHHHHHHhcCCEEEecchhhCCC-------------------------------CCCCCEEEEEEeC--CHHHH
Confidence 11223455554 6789999988643211 0113799999995 57889
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
+..++.|.+++.
T Consensus 374 ~~~l~rl~~~l~ 385 (387)
T PRK08912 374 DEAVERLAAARR 385 (387)
T ss_pred HHHHHHHHHHHh
Confidence 999998887654
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.5e-21 Score=210.64 Aligned_cols=310 Identities=13% Similarity=0.073 Sum_probs=197.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
++++++++++++|++. .++++++++|+.+++.++. ++|| +|++...|++.+. +...+...| ...++.+
T Consensus 61 ~~~le~~lA~l~g~~~----av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~--- 132 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEA----AVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA--- 132 (391)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC---
Confidence 8899999999999865 5667777889999998887 8999 8888877876543 444455566 3334332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 133 d~e~l~~-------~i~~~tklV~le~p~Np~G~v~dl~~I~~la~-----------~~gi~livD~a~a~~~~~~~~-~ 193 (391)
T TIGR01328 133 IPEEVKA-------HIKDNTKIVYFETPANPTMKLIDMERVCRDAH-----------SQGVKVIVDNTFATPMLTNPV-A 193 (391)
T ss_pred CHHHHHH-------hhccCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCchhccCCch-h
Confidence 3444443 33467999999999999999999999999999 899999999999877543333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.++|++++|++|+++++.+ .|+++.+++++++++.... .....+.++....+.+..
T Consensus 194 ~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~----------------------~~~~g~~l~~~~a~l~l~ 251 (391)
T TIGR01328 194 LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGI----------------------KDMTGSVISPFDAWLILR 251 (391)
T ss_pred cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHH----------------------HhCCCCCCCcHHHHHHHh
Confidence 5899999999999996643 4777777776655432110 001111233222222223
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++ .....+++..+++..+.+.|++. |.++ ++-|.-.+. ....+++++|.+.+. .+. .
T Consensus 252 ~L~---tl~~r~~~~~~na~~la~~L~~~------p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~-~~~--~ 319 (391)
T TIGR01328 252 GLK---TLNIRMKRHSENAMKVAEYLKSH------PAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGG-FAG--A 319 (391)
T ss_pred CcC---cHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCC-HHH--H
Confidence 333 33334577788888888888877 4443 222221110 123488999998632 111 1
Q ss_pred HHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|+-..+..+.|... .++....+..+++++... .|...+.||+|+|..+.++-++.|
T Consensus 320 ~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dl~~dl 384 (391)
T TIGR01328 320 KKLLNNLKLIRLAVSLGDAETLIQHPASMTHAVVPKEEREA---------------AGITDGMIRLSVGLEDADDLIADL 384 (391)
T ss_pred HHHHHhCCcceEecCCCCCcccCcCCCccccccCCHHHHHh---------------cCCCCCeEEEEeCcCCHHHHHHHH
Confidence 23555666555556666322 223333344454443321 255678999999986544445555
Q ss_pred HHHHH
Q psy16512 488 LSFLN 492 (815)
Q Consensus 488 v~~L~ 492 (815)
.++|+
T Consensus 385 ~~al~ 389 (391)
T TIGR01328 385 KQALD 389 (391)
T ss_pred HHHHh
Confidence 55544
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=210.12 Aligned_cols=323 Identities=13% Similarity=0.085 Sum_probs=211.8
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+....+..+.+. ...... .+++++.+++++|.+ ++ |++|+| ++++..++.++. ++||
T Consensus 57 ~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l----~~~l~~~la~~~g~~-~~--i~~tsG-~~a~~~~~~~l~-~~gd 127 (397)
T PRK06939 57 NHPELIAAAKAALDSHGFGMASVRFICGTQDL----HKELEEKLAKFLGTE-DA--ILYSSC-FDANGGLFETLL-GKED 127 (397)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccccccCCcHH----HHHHHHHHHHHhCCC-cE--EEEcCh-HHHHHHHHHHhC-CCCC
Confidence 456677777666544222222211 222334 678999999999975 43 888887 678888888887 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCC--CccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRH--SNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~--~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|++....|+++......++.. .+.+.. .+.+.+++.++ +...+ ++++|++.++.|++|...++++|.++|
T Consensus 128 ~vi~~~~~~~~~~~~~~~~~~~-~~~~~~---~d~~~l~~~i~---~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la 200 (397)
T PRK06939 128 AIISDALNHASIIDGVRLCKAK-RYRYAN---NDMADLEAQLK---EAKEAGARHKLIATDGVFSMDGDIAPLPEICDLA 200 (397)
T ss_pred EEEEEhhhhHHHHHHHHhcCCc-eEEeCC---CCHHHHHHHHH---hhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHH
Confidence 888899999877655554333 222221 23444444332 11222 688999999999999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~ 298 (815)
+ ++|+++|+|++++.+.... ++ ..++|++++|+||+++++. .||+++++++++.+...
T Consensus 201 ~-----------~~~~~li~De~~~~g~~~~~~~~~~~~~~~-~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~ 267 (397)
T PRK06939 201 D-----------KYDALVMVDDSHAVGFVGENGRGTVEHFGV-MDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQR 267 (397)
T ss_pred H-----------HhCCEEEEECcccccCcCCCCCCHHHHcCC-CCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHh
Confidence 9 8999999999986553211 11 1146899999999996454 59999988877655321
Q ss_pred cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 299 FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
... ....++.+...+.++.++++.+.......++..++++++.+.|+++ ++
T Consensus 268 ~~~----------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~ 318 (397)
T PRK06939 268 SRP----------------------YLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAA-------GF 318 (397)
T ss_pred Ccc----------------------ccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CC
Confidence 100 0112344444556666777776543222378888999999999876 44
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
++..+. ++++.+.++.. .+..++.+.|.++||.+.++.+...+
T Consensus 319 ~~~~~~--------~~~~~~~~~~~----~~~~~~~~~L~~~gI~v~~~~~~~~~------------------------- 361 (397)
T PRK06939 319 TLGPGE--------HPIIPVMLGDA----KLAQEFADRLLEEGVYVIGFSFPVVP------------------------- 361 (397)
T ss_pred CcCCCC--------CCEEEEEECCH----HHHHHHHHHHHHCCceEeeeCCCCCC-------------------------
Confidence 443322 45554444321 11235777787779998854321100
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...++||++++.++++++++++++.|++++.+
T Consensus 362 -------~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~ 393 (397)
T PRK06939 362 -------KGQARIRTQMSAAHTKEQLDRAIDAFEKVGKE 393 (397)
T ss_pred -------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 01268999999999999999999999987654
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=212.18 Aligned_cols=300 Identities=11% Similarity=0.046 Sum_probs=192.9
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ .|++|+|+++|+.+++.++. ++|| |++..+.|+.+....+..+... .++++.
T Consensus 93 ~~~Lr~aia~~~~~~~g~~~~~~~-~I~vt~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 170 (413)
T PLN00175 93 VPELNSAIAERFKKDTGLVVDPEK-EVTVTSGCTEAIAATILGLI-NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRP 170 (413)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCC-CEEEeCCHHHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCc
Confidence 556777777665 4 34441 39999999999999999987 8999 8888877776655444433222 556654
Q ss_pred h-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--
Q psy16512 179 D-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-- 255 (815)
Q Consensus 179 ~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-- 255 (815)
+ ...+++.++++ +.+++++|++++++||||.+++.+++.++++ .|+++++++|+|+++....
T Consensus 171 ~~~~~~~~~l~~~-------~~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~--------~a~~~~~~ii~De~Y~~l~~~ 235 (413)
T PLN00175 171 PDFAVPEDELKAA-------FTSKTRAILINTPHNPTGKMFTREELELIAS--------LCKENDVLAFTDEVYDKLAFE 235 (413)
T ss_pred ccCCCCHHHHHHh-------cCcCceEEEecCCCCCCCcCCCHHHHHHHHH--------HHHHcCcEEEEecccCccccC
Confidence 3 34555555543 3467999999999999999998776555444 2338999999999865321
Q ss_pred -CCCC---CCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 256 -NMLD---LKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 256 -~~~d---l~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
.... +.. .+..+++.||+|.|+ .+| +||+++++++++.+.... .....
T Consensus 236 ~~~~s~~~~~~~~~~vi~i~SfSK~~~-~~G~RiG~~v~~~~l~~~l~~~~------------------------~~~~~ 290 (413)
T PLN00175 236 GDHISMASLPGMYERTVTMNSLGKTFS-LTGWKIGWAIAPPHLTWGVRQAH------------------------SFLTF 290 (413)
T ss_pred CcccChhhCCCCcCcEEEEecchhhcc-CcchheeeeEeCHHHHHHHHHHH------------------------hhccC
Confidence 1111 211 234578899999999 447 899999988766543211 11122
Q ss_pred CCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
+.+.+...++..+++.....-.. .+++++.++.+.+.|++. ++.+..+.+ +.++++++.....
T Consensus 291 ~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~g-------~~f~~~~~~~~~~-- 354 (413)
T PLN00175 291 ATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKEV-------GFKVYPSSG-------TYFVMVDHTPFGF-- 354 (413)
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe-------eEEEEEeccccCC--
Confidence 44555566665665432111112 267777888888888876 566665542 4456666532110
Q ss_pred cCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 408 YGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 408 ~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+.| .++||.+.+|..|.... +...+++|++++. ++++++.
T Consensus 355 ~~~~~~~~~ll~~~gV~v~pg~~F~~~~------------------------------~~~~~~iRls~~~--~~e~l~~ 402 (413)
T PLN00175 355 ENDIAFCEYLIEEVGVAAIPPSVFYLNP------------------------------EDGKNLVRFAFCK--DEETLRA 402 (413)
T ss_pred CCHHHHHHHHHHhCCEEEeCchHhCCCC------------------------------CCCCCEEEEEEcC--CHHHHHH
Confidence 0122455554 67899999886442100 0113789999984 7899999
Q ss_pred HHHHHHHHHh
Q psy16512 487 FLSFLNQYFL 496 (815)
Q Consensus 487 lv~~L~~~~~ 496 (815)
.++.|.++++
T Consensus 403 ~~~rL~~~~~ 412 (413)
T PLN00175 403 AVERMKTKLK 412 (413)
T ss_pred HHHHHHHHHh
Confidence 9999988764
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=209.43 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=189.1
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+......++... .++..+
T Consensus 68 ~~~lr~~ia~~~~~~~~~~~~~~~--i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~ 144 (384)
T PRK06348 68 DVELIEEIIKYYSKNYDLSFKRNE--IMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYE 144 (384)
T ss_pred cHHHHHHHHHHHHHHhCCCCChhh--EEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCc
Confidence 456777777776 466766 9999999999999999997 8999 8888877776655555443222 334332
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
++ .++++.+++++ .+++++|++++++||||.+++.+++.++++ .|+++++++|+|+++..-.
T Consensus 145 ~~~~~~d~~~l~~~~-------~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~--------~a~~~~~~ii~De~y~~~~~ 209 (384)
T PRK06348 145 EDGFQINVKKLEALI-------TSKTKAIILNSPNNPTGAVFSKETLEEIAK--------IAIEYDLFIISDEVYDGFSF 209 (384)
T ss_pred CcCCcCCHHHHHHhh-------CcCccEEEEeCCCCCCCcCCCHHHHHHHHH--------HHHHCCeEEEEeccccccee
Confidence 22 35666665533 357899999999999999999776655554 3338999999999865321
Q ss_pred --CCCC---CCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 256 --NMLD---LKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 256 --~~~d---l~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
.... +.. .+..+++.||+|.+| .+| +||+++++++++.+.... ....
T Consensus 210 ~~~~~~~~~~~~~~~~vi~~~SfSK~~~-l~GlRiG~~v~~~~~~~~~~~~~------------------------~~~~ 264 (384)
T PRK06348 210 YEDFVPMATLAGMPERTITFGSFSKDFA-MTGWRIGYVIAPDYIIETAKIIN------------------------EGIC 264 (384)
T ss_pred CCCccchhhcCCCcCcEEEEecchhccC-CccccceeeecCHHHHHHHHHHH------------------------Hhcc
Confidence 1111 111 234578889999998 447 899999887765442211 1111
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.+.....++..++.......... +..++.++++.+.|..+ +++++..+.+ +.++++.++...
T Consensus 265 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~------~~~~~~~p~g-------g~~~~~~~~~~~-- 329 (384)
T PRK06348 265 FSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIESI------PNLSLHPPKG-------SIYAFINIKKTG-- 329 (384)
T ss_pred CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC------CCceeccCCe-------eEEEEEecccCC--
Confidence 2345555555555554322221122 55566677788888776 5666665442 445666665311
Q ss_pred ccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 407 YYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 407 ~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
++..++.+.+ +++||.+.+|..+... ..+++|++++ .+.++++
T Consensus 330 -~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~--~~~~~l~ 373 (384)
T PRK06348 330 -LSSVEFCEKLLKEAHVLVIPGKAFGES---------------------------------GEGYIRLACT--VGIEVLE 373 (384)
T ss_pred -CCHHHHHHHHHHhCCEEEcCchhhccC---------------------------------CCCeEEEEec--CCHHHHH
Confidence 1223456554 6789999988654210 1378999996 3778888
Q ss_pred HHHHHHHH
Q psy16512 486 YFLSFLNQ 493 (815)
Q Consensus 486 ~lv~~L~~ 493 (815)
..++.|.+
T Consensus 374 ~al~~l~~ 381 (384)
T PRK06348 374 EAFNRIEK 381 (384)
T ss_pred HHHHHHHh
Confidence 88887765
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-21 Score=212.83 Aligned_cols=339 Identities=14% Similarity=0.097 Sum_probs=221.5
Q ss_pred hhcccccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHH-HHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh
Q psy16512 67 YTGAGVYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQ-MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 67 ~a~~~~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~-~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al 144 (815)
.++...+++.+.+++.+.+.. ...++|++...........+++ +++.+++++|++... |+++ |+++|+.+++.++
T Consensus 25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~--v~~~-sgt~a~~~~l~~l 101 (402)
T cd00378 25 IASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYAN--VQPH-SGSQANLAVYFAL 101 (402)
T ss_pred eccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCcee--eecC-CcHHHHHHHHHHh
Confidence 445667788999988765532 2235555442222221222444 677888999997643 5555 5679999999999
Q ss_pred ccCCCc-EEEecCCCcchhhHHHH--hhccc----eEEcCc---hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 145 EFNEGS-FIYLTDNHTSVLGMREL--VKTNQ----IYSFSV---DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 145 ~~~~gd-vv~~~~~h~s~~~~~~~--~~~~g----~v~~~~---~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
. ++|| |+++..+|++....... +...| .++++. ++.++++.+++++. .++++++++++++|
T Consensus 102 ~-~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~------~~~~~~v~~~~~~~-- 172 (402)
T cd00378 102 L-EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMAL------EFKPKLIVAGASAY-- 172 (402)
T ss_pred c-CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHH------hCCCCEEEecCccc--
Confidence 7 9999 88888888765432111 23334 344433 35677777776442 35689999888765
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
|...|+++|.++|+ ++|+++++|++|+.|.. +.++. ++|+++.|+||+|++|.| |+++.++
T Consensus 173 ~~~~~~~~I~~l~~-----------~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~ 238 (402)
T cd00378 173 PRPIDFKRFREIAD-----------EVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRK 238 (402)
T ss_pred CCCcCHHHHHHHHH-----------hcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEecc
Confidence 56779999999999 89999999999876542 33333 679999999999966764 7777766
Q ss_pred -ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHH
Q psy16512 290 -KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYF 366 (815)
Q Consensus 290 -~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L 366 (815)
++.+.+..... ....++++...+.++..++..+.. ..... +++.++++++.+.|
T Consensus 239 ~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 295 (402)
T cd00378 239 GELAKKINSAVF-----------------------PGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEAL 295 (402)
T ss_pred HHHHHHHHHHhC-----------------------ccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66655532110 011234445556666666654433 22233 78889999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
+++ ++.++... ..++++++.++... .+...+.+.|.++||.++.+.+... .. +
T Consensus 296 ~~~-------g~~~~~~~------~~~~~v~v~~~~~~---~~~~~~~~~l~~~gI~v~~~~~p~~--~~---~------ 348 (402)
T cd00378 296 KER-------GFKVVSGG------TDNHLVLVDLRPKG---ITGKAAEDALEEAGITVNKNTLPWD--PS---S------ 348 (402)
T ss_pred HhC-------CCeEeecC------CCCeEEEEeCCccC---CCHHHHHHHHHHcCcEEcCCcCCCC--CC---C------
Confidence 886 56665321 12677777775321 1223577778999999987533111 00 0
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHhhcC
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~~~~ 499 (815)
......+|++++..+ +++|++++++.|++++.++.
T Consensus 349 ------------------~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 349 ------------------PFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred ------------------CCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 011368999998754 69999999999999988877
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=211.58 Aligned_cols=296 Identities=14% Similarity=0.137 Sum_probs=197.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcch
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNML 185 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~ 185 (815)
.+++++.+|+++|.+ +. +++++|. .++..++.++. ++|| |++...+|+++....+..+.. ...+..++ .+
T Consensus 148 ~~ele~~lA~~~g~~-~a--i~~~~G~-~an~~~i~al~-~~Gd~Vi~d~~~h~s~~~~~~~~Ga~-v~~~~~~d---~~ 218 (489)
T PLN02483 148 HRELEELVARFVGKP-AA--IVFGMGY-ATNSTIIPALI-GKGGLIISDSLNHNSIVNGARGSGAT-IRVFQHNT---PS 218 (489)
T ss_pred HHHHHHHHHHHhCCC-cE--EEECCHH-HHHHHHHHHhC-CCCCEEEEcchhhHHHHHHHHHcCCe-EEEEeCCC---HH
Confidence 889999999999964 33 7777764 46667777777 9999 888889999987654443322 22332222 22
Q ss_pred hhhhhhhhhhhhcCCC-----cc-EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--
Q psy16512 186 NEFKESQENVENMRHS-----NS-LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-- 257 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~-----t~-lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-- 257 (815)
.+++.+++......++ ++ +|++.++.|++|.+.++++|.++|+ ++|+++++|++|+.|...
T Consensus 219 ~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~-----------~~~~~livDEa~s~g~~G~~ 287 (489)
T PLN02483 219 HLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCK-----------KYKAYVYLDEAHSIGAVGKT 287 (489)
T ss_pred HHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECcCccCccCCC
Confidence 3333222111011122 24 6777788899999999999999999 899999999999865421
Q ss_pred -------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 258 -------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 258 -------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
.++...+.|+++.|++|.|| +.| |+++.++++++.++....+ ....++.
T Consensus 288 G~g~~~~~~v~~~~~dI~~~SfSKs~g-~~G-G~i~~~~~li~~l~~~~~~----------------------~~~~~~~ 343 (489)
T PLN02483 288 GRGVCELLGVDPADVDIMMGTFTKSFG-SCG-GYIAGSKELIQYLKRTCPA----------------------HLYATSM 343 (489)
T ss_pred CCchHHhcCCCcccCcEEEEecchhcc-cCc-eEEEcCHHHHHHHHHhCcc----------------------ccccCCc
Confidence 22322357999999999999 666 9999888887766432110 0112344
Q ss_pred ChhHHHHHHHHHHHHHhhh-----hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 331 NYLAIISLKYGFDTMEKKR-----KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~-----~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
+...+.++.++++.+.... ..+ ++.+++++++.+.|+++ ++.++++.. ++++.+.+....
T Consensus 344 ~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-------G~~v~~~~~-------sp~~~l~l~~~~ 409 (489)
T PLN02483 344 SPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-------GFEVLGDND-------SPVMPIMLYNPA 409 (489)
T ss_pred CHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCC-------CCEEEEEECCHH
Confidence 4455556667787665221 122 77888899999999987 566665432 456666554321
Q ss_pred CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
....+.+.|.++||.+.+..++..+. ..+.+|++++..+|+||+
T Consensus 410 ----~~~~~~~~Ll~~GI~v~~~~fp~~p~--------------------------------~~~~vRi~isa~~t~edI 453 (489)
T PLN02483 410 ----KIPAFSRECLKQNVAVVVVGFPATPL--------------------------------LLARARICISASHSREDL 453 (489)
T ss_pred ----HHHHHHHHHHHCCcEEeeeCCCCCCC--------------------------------CCceEEEEeCCCCCHHHH
Confidence 12246777778899998533322110 026899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
++++++|++++.
T Consensus 454 d~~l~~L~~~~~ 465 (489)
T PLN02483 454 IKALEVISEVGD 465 (489)
T ss_pred HHHHHHHHHHHH
Confidence 999999999753
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-20 Score=211.25 Aligned_cols=292 Identities=13% Similarity=0.059 Sum_probs=184.3
Q ss_pred HHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+++++++ |. ++++ .|++|+|+++++..++.++. ++|| |++..+.|+.+....+..+... .++.+.
T Consensus 71 ~~~lr~aia~~~~~~~g~~~~~~~-~ii~t~G~~~~i~~~~~~~~-~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~ 148 (385)
T PRK09276 71 MLEFRKAVADWYKRRFGVELDPET-EVISLIGSKEGIAHIPLAFV-NPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKE 148 (385)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCC
Confidence 567788888876 43 3431 38899999999999999998 8999 8898888876655444333222 456554
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC--
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-- 254 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-- 254 (815)
+. ..+++.+++ .+.+++++|++++|+||||..+|.+++.++++ .|+++++++|+|+++...
T Consensus 149 ~~g~~~d~~~l~~-------~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~--------~~~~~~~~ii~De~y~~~~~ 213 (385)
T PRK09276 149 ENGFLPDLDAIPE-------DVAKKAKLMFINYPNNPTGAVADLEFFEEVVD--------FAKKYDIIVCHDAAYSEIAY 213 (385)
T ss_pred CCCCcCCHHHHHH-------hccccceEEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHCCcEEEEecchhheec
Confidence 32 234555543 23457899999999999999999766555544 233899999999987532
Q ss_pred --CCCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 255 --SNMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 255 --~~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
..+..+.. .+..+++.||+|.|| ++| +||++.++++++.+..... ..
T Consensus 214 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~i~~~~l~~~~~~~~~------------------------~~ 268 (385)
T PRK09276 214 DGYKPPSFLEVPGAKDVGIEFHSLSKTYN-MTGWRIGFAVGNADLIAGLGKVKS------------------------NV 268 (385)
T ss_pred CCCCCCChhccCCCcCCEEEEecchhhcC-CcchhheeeeCCHHHHHHHHHHHh------------------------hc
Confidence 11222211 134578899999999 668 8999998887765532210 00
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.+.+...++..+++.....-.. .+++++.++++.+.|+++ ++.++.+.+ +.++++.++..
T Consensus 269 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~v~~~~~-- 332 (385)
T PRK09276 269 DSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRKL-------GLEVEPPKA-------TFYVWAPVPKG-- 332 (385)
T ss_pred cCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc-------ceEEEEECCCC--
Confidence 1122333444444444321111112 266677788888888876 566654432 44466666532
Q ss_pred CccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 406 TYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 406 ~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
++..++.+.| .++||.+++|..|... ..+++|||++. +++++
T Consensus 333 --~~~~~l~~~ll~~~gi~v~~g~~f~~~---------------------------------~~~~~Ris~~~--~~~~l 375 (385)
T PRK09276 333 --YTSAEFATLLLDKAGVVVTPGNGFGEY---------------------------------GEGYFRIALTV--PDERI 375 (385)
T ss_pred --CCHHHHHHHHHHhCCEEECCchhhCCC---------------------------------CCCeEEEEeCC--CHHHH
Confidence 2333455555 6789999988654210 03789999983 56776
Q ss_pred HHHHHHHHH
Q psy16512 485 KYFLSFLNQ 493 (815)
Q Consensus 485 ~~lv~~L~~ 493 (815)
...++.|.+
T Consensus 376 ~~~l~~l~~ 384 (385)
T PRK09276 376 EEAVERIKK 384 (385)
T ss_pred HHHHHHHhh
Confidence 666666643
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.2e-20 Score=210.06 Aligned_cols=334 Identities=14% Similarity=0.085 Sum_probs=219.3
Q ss_pred cchhhHHHHHHHHhhccccCCCC--hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHG--NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s--~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.....+...+ .+...+. ..+++++|+++++.+ +. |++++|++ ++..++.++. ++||
T Consensus 124 ~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~----~~~Lee~La~~~~~~-~~--i~~s~G~~-a~~sai~a~~-~~gd 194 (481)
T PLN02822 124 GNEKIKESCTSALEKYGVGSCGPRGFYGTIDV----HLDCETKIAKFLGTP-DS--ILYSYGLS-TIFSVIPAFC-KKGD 194 (481)
T ss_pred CCHHHHHHHHHHHHHhCCCCcccCccccCHHH----HHHHHHHHHHHhCCC-CE--EEECCHHH-HHHHHHHHhC-CCCC
Confidence 46778888877776532221111 1444555 889999999999975 33 89988877 6788999998 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhc--CCCc-cEEEEecccCCCccccChHHHHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENM--RHSN-SLFVYPAESNFSGTKYPLSWCNTV 226 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~--~~~t-~lv~i~~~~n~tG~~~~l~~I~~l 226 (815)
+++....|.++.....+.+.. .+.+..++.. .++..++++.... .+++ ++|+++.+++++|.+.|+++|.++
T Consensus 195 ~Ii~d~~~H~s~~~~~~ls~~~-~~~~~~nd~~---~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l 270 (481)
T PLN02822 195 IIVADEGVHWGIQNGLYLSRST-IVYFKHNDME---SLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRL 270 (481)
T ss_pred EEEEeCCccHHHHHHHHHcCCe-EEEECCCCHH---HHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHH
Confidence 666666787775555544322 3333322221 2222222222211 2344 799999999999999999999999
Q ss_pred hhccccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
|+ +||+++++|++|+.|... .++....+|+++.|++|.|| +.| |+++.++++++.++.
T Consensus 271 ~~-----------k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg-~~G-G~i~g~~~ii~~~~~ 337 (481)
T PLN02822 271 KE-----------KYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALA-TEG-GFCTGSARVVDHQRL 337 (481)
T ss_pred HH-----------HcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhh-hCC-eEEEcCHHHHHHHHh
Confidence 99 899999999999866421 22222357999999999999 667 899988887765432
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.. .+ ....++.+.....|+.++++.+.......++++++++++.+.|+++ ++
T Consensus 338 ~~--~~--------------------~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~------~g 389 (481)
T PLN02822 338 SS--SG--------------------YVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDI------PG 389 (481)
T ss_pred cC--Cc--------------------eeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc------CC
Confidence 11 00 0112333445555555778776543223388999999999999887 56
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+.+..+.. ++++.+.+.+..+ ..-...++.+.| .++||.+.++.....+
T Consensus 390 ~~~~~~~~-------spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~------------------- 443 (481)
T PLN02822 390 LSIGSNTL-------SPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLD------------------- 443 (481)
T ss_pred cccCCCCC-------CCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcC-------------------
Confidence 66654433 7888888854211 100012355555 5889999865321110
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+..+..+|++++..+|++||++++++|++++.+
T Consensus 444 -----------~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 444 -----------KCRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred -----------CCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 0111257999999889999999999999987643
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=206.62 Aligned_cols=288 Identities=14% Similarity=0.076 Sum_probs=184.6
Q ss_pred HHHHHHHHHhHc----C--CCCC-ceeEEecCCchhhHHHHHhhhccCCC---c-EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 107 IDQMRTKILQYF----N--TDSD-HYSVIFTSGATSAIKTVSEYFEFNEG---S-FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~al~~~~~al~~~~g---d-vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
..++|+.+++++ | ++++ + |++|+|+++|+..++.++. ++| | |++..+.|+.+....+..+... .+
T Consensus 38 ~~~lr~aia~~~~~~~g~~~~~~~~--Iiit~Gs~~ai~~~~~~~~-~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v 114 (350)
T TIGR03537 38 TKALREAISGWFERRFGVKLDPDAQ--VLPSAGSKEAIFHFPLVFI-DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAV 114 (350)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCc--EEEcCChHHHHHHHHHHHc-CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEc
Confidence 456777777765 6 4454 5 9999999999999999987 766 5 8888888877765554433332 44
Q ss_pred EcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEec
Q psy16512 175 SFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 175 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
+++.++ .++++.+++++ .++++++++++++||||..+|.+ +|.++|+ ++|+++|+|+
T Consensus 115 ~~~~~~~~~~d~~~l~~~~-------~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~-----------~~~~~ii~De 176 (350)
T TIGR03537 115 KLKKEDGFLLRLEKVEKSI-------LEETKIVWINYPHNPTGATAPRSYLKETIAMCR-----------EHGIILCSDE 176 (350)
T ss_pred ccCcccCCccCHHHHHHhh-------hhccEEEEEeCCCCCcCcccCHHHHHHHHHHHH-----------HcCcEEEEec
Confidence 554332 24666666533 35789999999999999999955 4555566 8999999999
Q ss_pred cccc---CCCCCCCCCC--CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 250 ATYC---GSNMLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 250 a~~~---g~~~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
++.. +..+.++... +..+++.|++|.+| .+| +||++.++++.+.++....
T Consensus 177 ~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~GlRiG~~~~~~~~~~~~~~~~~---------------------- 233 (350)
T TIGR03537 177 CYTEIYFGEPPHSALEVGIENVLAFHSLSKRSG-MTGYRSGFVAGDEKLISFLRKLRA---------------------- 233 (350)
T ss_pred cccccccCCCCCchhhcCcCCEEEEeecccccC-CccccceeeecCHHHHHHHHHHHH----------------------
Confidence 8753 2222222222 23477889999998 457 8999887776655532210
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
.+.. +.+.....++.+++..........+++++.++.+.+.|... ++++..+.+ +.++++.++.
T Consensus 234 -~~~~-~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~~-------g~~~~~~~g-------~~~~~~~~~~ 297 (350)
T TIGR03537 234 -NFGV-ASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNKV-------GLEYLYPDA-------TFYLWVKVPS 297 (350)
T ss_pred -hhcc-CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe-------EEEEEEECCC
Confidence 1111 22223333333444321111111256677777777777765 556554432 4456666654
Q ss_pred CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
. ++..++.+.|.++||.+.+|..+... ..+++|+++. .+.+
T Consensus 298 ~----~~~~~l~~~L~~~gv~v~~g~~f~~~---------------------------------~~~~~Ri~~~--~~~~ 338 (350)
T TIGR03537 298 G----IDAKDYALRLLENGIVVAPGENFGSG---------------------------------EEGYVRVALV--PTLE 338 (350)
T ss_pred C----CCHHHHHHHHHHCCEEEcCchhhCCC---------------------------------CCCEEEEEec--CCHH
Confidence 2 23345788888899999988654211 1378999986 4678
Q ss_pred HHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQ 493 (815)
Q Consensus 483 di~~lv~~L~~ 493 (815)
+++.+++.|++
T Consensus 339 ~~~~~l~~~~~ 349 (350)
T TIGR03537 339 ECEEALRLWER 349 (350)
T ss_pred HHHHHHHHHhc
Confidence 88888887764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=210.10 Aligned_cols=313 Identities=17% Similarity=0.177 Sum_probs=198.0
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~ 139 (815)
.+.|..+... .+++.+.+++.+.+.. ...+|. .. ..++|+.+++++|+++++ |++ |+|+++++.+
T Consensus 36 ~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~------~~----~~~lr~~ia~~~~~~~~~--i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 36 IIKLGSNENPLGPSPKAVEAIEKELSK-IHRYPE------PD----APELREALSKYTGVPVEN--IIVGGDGMDEVIDT 102 (361)
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHHh-hcCCCC------CC----HHHHHHHHHHHhCCCHHH--EEEeCCCHHHHHHH
Confidence 3455443322 3456667766655442 122222 11 578999999999998877 888 7888999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.++. ++|| |+++.+.|+.+. ..++..| .++.+.+...+++.+++.+ +++++++++++++|||
T Consensus 103 ~~~~~~-~~gd~vlv~~p~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~v~~~~p~npt 171 (361)
T PRK00950 103 LMRTFI-DPGDEVIIPTPTFSYYE---ISAKAHGAKPVYAKREEDFSLDVDSVLNAI-------TEKTKVIFLCTPNNPT 171 (361)
T ss_pred HHHHhc-CCCCEEEEcCCChHHHH---HHHHHcCCEEEEeecCCCCCcCHHHHHHHh-------ccCCCEEEEeCCCCCC
Confidence 998886 8898 777776655443 3334445 3444444356666665533 3578999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--CCCC-CCCCCcEEEEccccccccCCc--ceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--MLDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~ 289 (815)
|.++|.+++.++++ ++|+++++|+++..... ...+ ...+.-+++.|++|.|| .+| +||+++++
T Consensus 172 G~~~~~~~l~~l~~-----------~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~~~~~ 239 (361)
T PRK00950 172 GNLIPEEDIRKILE-----------STDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFG-LAGLRIGYGFVPE 239 (361)
T ss_pred CCCcCHHHHHHHHH-----------HCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhc-CchhhcchhcCCH
Confidence 99999999999999 78999999999853221 1111 11233477789999999 557 79999888
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++++.++... ...+.+.+...++..+++.........++.+++++++.+.|.
T Consensus 240 ~~~~~~~~~~--------------------------~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~-- 291 (361)
T PRK00950 240 WLIDYYMRAK--------------------------TPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP-- 291 (361)
T ss_pred HHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC--
Confidence 7765443211 001233344444444443211111111444444444444332
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+.++. . .++++++.+... +..++.+.|.++||.+++|..+.
T Consensus 292 --------~~~~~-~-------~~~~i~~~~~~~-----~~~~~~~~l~~~gv~v~~~~~f~------------------ 332 (361)
T PRK00950 292 --------FKVYP-S-------EANFVLVDVTPM-----TAKEFCEELLKRGVIVRDCTSFR------------------ 332 (361)
T ss_pred --------eeECC-C-------cceEEEEECCCC-----CHHHHHHHHHHCCEEEeeCCccC------------------
Confidence 33332 2 256777777322 33457888888999998864321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+...+++|+|++ +.+++++++++|++++
T Consensus 333 ---------------~~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 333 ---------------GLGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred ---------------CCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 111378999998 7889999999999864
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-21 Score=209.93 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=193.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++.+++++|++. +++++|+++|+.+++.++. ++|| +|++...|.+.+. +...+...| ...++.+
T Consensus 56 ~~~le~~la~l~g~~~----~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~--- 127 (380)
T TIGR01325 56 VAAFEERIAALEGAER----AVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT--- 127 (380)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC---
Confidence 8899999999999843 6788999999999999887 8899 8888777766543 444555566 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+++++++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 128 d~~~l~~-------~i~~~tklV~le~p~np~g~~~dl~~I~~la~-----------~~gi~livD~a~~~~~~~~pl-~ 188 (380)
T TIGR01325 128 DLNAWEA-------AVKPNTKLVFVETPSNPLGELVDIAALAELAH-----------AIGALLVVDNVFATPVLQQPL-K 188 (380)
T ss_pred CHHHHHH-------hcCCCceEEEEECCCCCCCeeeCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 3334433 33467999999999999999999999999999 899999999998765432223 4
Q ss_pred CCCcEEEEccccccccCC-cc-eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPT-GL-GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~-G~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.++|+++.|++|+++++. .+ |+++.+++.++.++.... ...++.+....+.+..
T Consensus 189 ~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~------------------------~~g~~~~p~~a~~~l~ 244 (380)
T TIGR01325 189 LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLR------------------------HTGPAMSPFNAWVLLK 244 (380)
T ss_pred hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHH------------------------hhCCCCCHHHHHHHHh
Confidence 578999999999999552 13 677777776555432210 1112333333333334
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+. ..+++..+.+.++.+.|++. |.++- +-|...+. ....+++++|.+.+ .+. .
T Consensus 245 ~l~tl~---~r~~~~~~~a~~la~~L~~~------p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~--~~~--~ 311 (380)
T TIGR01325 245 GLETLS---LRMQKQFDSALAIAEWLQAQ------PQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVAD--RAA--A 311 (380)
T ss_pred ccCcHH---HHHHHHHHHHHHHHHHHHcC------CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--HHH--H
Confidence 444433 24477778888888888876 44332 21211000 12458899999972 111 1
Q ss_pred HHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|+-..+.++.|... .++....+..++++.... .|..++.||+|+|..+.++-++.|
T Consensus 312 ~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~liR~svGlE~~~dl~~dl 376 (380)
T TIGR01325 312 WKVLDAVELVSITNNLGDAKSTITHPATTTHGRMQPEERAA---------------AGIGDGLVRLSVGLEDVDDLIADL 376 (380)
T ss_pred HHHHHcCCcceEcccCCCCCeeeeCCCccCcccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHHH
Confidence 24566666666666665322 122222344455443321 255678999999976544444444
Q ss_pred HH
Q psy16512 488 LS 489 (815)
Q Consensus 488 v~ 489 (815)
.+
T Consensus 377 ~~ 378 (380)
T TIGR01325 377 KR 378 (380)
T ss_pred Hh
Confidence 33
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=211.43 Aligned_cols=293 Identities=16% Similarity=0.194 Sum_probs=193.1
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++.++. ++|+ |++..++|+.+.......+... .++++.
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~-~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 148 (391)
T PRK08361 72 IPELREAIAEYYKKFYGVDVDVDN--VIVTAGAYEATYLAFESLL-EEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLRE 148 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCccc--EEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCC
Confidence 567788888876 3 55666 9999999999999999997 8999 8888888877655444332222 556654
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++ .++++.+++.+ .++++++++++++||||..+| +++|.++|+ ++++++|+|++++.
T Consensus 149 ~~~~~~d~~~l~~~i-------~~~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~-----------~~~~~ii~De~y~~ 210 (391)
T PRK08361 149 ENEFQPDPDELLELI-------TKRTRMIVINYPNNPTGATLDKEVAKAIADIAE-----------DYNIYILSDEPYEH 210 (391)
T ss_pred ccCCCCCHHHHHHhc-------ccccEEEEEeCCCCCCCcCcCHHHHHHHHHHHH-----------HcCeEEEEEccccc
Confidence 32 45666665533 457899999999999999999 555666666 89999999988653
Q ss_pred C----CCCCCCCC--CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 254 G----SNMLDLKQ--HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 254 g----~~~~dl~~--~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
. .....+.. ...++++.|+||.|| ++| +||+++++++++.+.... .+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~GlRiG~~~~~~~~~~~~~~~~------------------------~~ 265 (391)
T PRK08361 211 FLYEGAKHYPMIKYAPDNTILANSFSKTFA-MTGWRLGFVIAPEQVIKDMIKLH------------------------AY 265 (391)
T ss_pred ceeCCCCCCCHhhcCCCCEEEEecCchhcC-CcHhhhhhhccCHHHHHHHHHHH------------------------hh
Confidence 2 11112211 235688899999999 558 899999887765442211 11
Q ss_pred cCCCCChhHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 326 EDGTVNYLAIISLKYGFDTME---KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~---~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
..++.+.....++..+++.-. .+....++.++.++.+.+.|+++ +++.+..+.+ +.++++.++.
T Consensus 266 ~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~~p~g-------~~~~~~~l~~ 332 (391)
T PRK08361 266 IIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEM------PHIKVFEPKG-------AFYVFANIDE 332 (391)
T ss_pred hccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhC------CCCeecCCCE-------EEEEEEECCC
Confidence 122334444444444443211 01111266677788888888877 6777766542 4455566653
Q ss_pred CCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 403 KDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.. ++..++.+.| .++||.+.+|..|... ..+++|++++. ++
T Consensus 333 ~~---~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~ 374 (391)
T PRK08361 333 TG---MSSEDFAEWLLEKARVVVIPGTAFGKA---------------------------------GEGYIRISYAT--SK 374 (391)
T ss_pred CC---CCHHHHHHHHHHhCCEEEcCchhhCCC---------------------------------CCCEEEEEecC--CH
Confidence 11 2223466555 5789999988654210 13789999984 67
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
++++..++.|.+++.
T Consensus 375 ~~l~~al~~l~~~l~ 389 (391)
T PRK08361 375 EKLIEAMERMEKALE 389 (391)
T ss_pred HHHHHHHHHHHHHHh
Confidence 788888888888653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=210.87 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=204.8
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CCC
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEG 149 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~g 149 (815)
.++.+.+++.+.+.....+...+. +..... ..++++++++++|.+ +. +++++| ++|+..++..+.. .+|
T Consensus 61 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~----~~~Le~~la~~~g~~-~~--i~~~sG-~~a~~~~i~~l~~~~~g 132 (410)
T PRK13392 61 QHPDVIGAMVDALDRYGAGAGGTRNISGTSHP----HVLLERELADLHGKE-SA--LLFTSG-YVSNDAALSTLGKLLPG 132 (410)
T ss_pred CCHHHHHHHHHHHHHcCCCCchhhhcccChHH----HHHHHHHHHHHhCCC-CE--EEECcH-HHHHHHHHHHHhcCCCC
Confidence 457778888776654211111111 112223 678999999999963 33 777766 5677777776641 478
Q ss_pred c-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
+ ++....+|.+++......+.. ...+..++ .+.+++.+ .....+++++|++++++||||.+.|+++|.++|+
T Consensus 133 ~~vi~~~~~h~s~~~~~~~~g~~-~~~~~~~d---~~~l~~~l---~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~ 205 (410)
T PRK13392 133 CVILSDALNHASMIEGIRRSGAE-KQVFRHND---LADLEEQL---ASVDPDRPKLIAFESVYSMDGDIAPIEAICDLAD 205 (410)
T ss_pred CEEEEehhhhHHHHHHHHHcCCe-EEEEeCCC---HHHHHHHH---HhccCCCCEEEEEeCCCCCCcccccHHHHHHHHH
Confidence 8 555555788776533332211 22222221 12222222 1122357899999999999999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCCCCC---C---C--CCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLD---L---K--QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d---l---~--~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++++++++|++|+.|..... + . ...+|+++.|++|+||.+ | ||++.++++++.++....
T Consensus 206 -----------~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-G-G~~~~~~~~~~~l~~~~~ 272 (410)
T PRK13392 206 -----------RYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-G-GYIAASADLIDFVRSFAP 272 (410)
T ss_pred -----------HcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-c-chhhcCHHHHHHHHHhCc
Confidence 89999999999986542111 0 0 114688999999999954 5 788888777664432110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
+. .+ ..+.+....+++.++++.+.......+++.++++++.+.|+++ ++.+
T Consensus 273 ~~---------------------~~-s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 323 (410)
T PRK13392 273 GF---------------------IF-TTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNAN-------GIPV 323 (410)
T ss_pred ch---------------------hc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCCC
Confidence 00 01 2234556677777888877665444477788889999999886 5555
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
..+ .++++.+.+.... ...++.+.| .++||.++.+.....+
T Consensus 324 ~~~--------~~~~~~i~~~~~~----~~~~~~~~L~~~~GI~v~~~~~p~~~-------------------------- 365 (410)
T PRK13392 324 MPS--------PSHIVPVMVGDPT----LCKAISDRLMSEHGIYIQPINYPTVP-------------------------- 365 (410)
T ss_pred CCC--------CCCEEEEEeCCHH----HHHHHHHHHHHhCCEEEeeeCCCCCC--------------------------
Confidence 432 2566666554211 122466666 5789999875321110
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|++++.++|++|+++++++|++++.
T Consensus 366 ------~~~~~lRis~~~~~t~edid~l~~aL~~~~~ 396 (410)
T PRK13392 366 ------RGTERLRITPTPLHDDEDIDALVAALVAIWD 396 (410)
T ss_pred ------CCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 0126899999999999999999999999764
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=218.16 Aligned_cols=324 Identities=14% Similarity=0.127 Sum_probs=202.5
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
|+.+++++.+.+.. ...++ .... ..++|+.|++++ ++++++ |++|+|+++++.+++.++. +
T Consensus 164 p~~~~~~~~~~~~~-~~~Y~-----~~~G----~~~lReaia~~~~~~~~~~~~~~~--I~it~G~~eal~~~~~~l~-~ 230 (517)
T PRK13355 164 PDEVVYDMAQQLTD-TEGYS-----DSKG----LFSARKAIMQYAQLKGLPNVDVDD--IYTGNGVSELINLSMSALL-D 230 (517)
T ss_pred CHHHHHHHHHHhhc-CCCCC-----CCcC----hHHHHHHHHHHHHhcCCCCCChhH--EEEeCcHHHHHHHHHHHhC-C
Confidence 66677776665432 11111 1222 678999999988 677777 9999999999999999997 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC 223 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I 223 (815)
+|| |+++.+.|+.+......++... .++.+.++ ..+++.+++ .+++++++|++++||||||.+++.+++
T Consensus 231 ~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~-------~~~~~~k~i~i~nP~NPTG~v~~~~~l 303 (517)
T PRK13355 231 DGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRS-------KITSRTKAIVIINPNNPTGALYPREVL 303 (517)
T ss_pred CCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHH-------hcCcCceEEEEECCCCCCCcCcCHHHH
Confidence 999 9999988887765555443322 44555432 356666654 335789999999999999999995554
Q ss_pred HHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCCCCc---EEEEccccccccCCc--ceEEEEe--cccc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQHQPD---FISISFYKMFGYPTG--LGALIVK--QKSA 292 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~~~D---~vv~S~~K~~g~p~G--~G~l~~~--~~~~ 292 (815)
.++++ .|++++++||+|+++.- +....++..+..+ +++.||+|.|+ .+| +||++++ ++.+
T Consensus 304 ~~i~~--------~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~-~~G~RiG~~i~~~~~~~~ 374 (517)
T PRK13355 304 QQIVD--------IAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHM-IAGYRIGWMILSGNKRIA 374 (517)
T ss_pred HHHHH--------HHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhcc-CcccceEEEEeeCchhhH
Confidence 44433 22389999999998642 2111222222233 33479999998 558 8999965 3322
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
+.+...+ .. ......+.+.++..++..++... ...-....+..+.++++.+.|+++
T Consensus 375 ~~~~~~l---~~------------------~~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 433 (517)
T PRK13355 375 KDYIEGL---NM------------------LANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYEQRELVYNALNAI 433 (517)
T ss_pred HHHHHHH---HH------------------HhcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1110000 00 00011234556666666666321 111011133455678888888877
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEE-EEecCC-CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNF-NLLHKD-GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f-~~~~~~-~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
|++.+..|. ++++.| +++... ...-+...+.++|.++||.+.+|..|...
T Consensus 434 ------~g~~~~~p~--------g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~-------------- 485 (517)
T PRK13355 434 ------PGISAVKPK--------AAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWD-------------- 485 (517)
T ss_pred ------CCcccCCCC--------eeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCC--------------
Confidence 678777654 444443 554210 00001223567789999999998655321
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|+. .++++++..++.|.+++.
T Consensus 486 -------------------~~~~~Ris~~--~~~~~l~~a~~rl~~~~~ 513 (517)
T PRK13355 486 -------------------KPDHFRVVYL--PRLEDLEDAMDRLADFFS 513 (517)
T ss_pred -------------------CcCEEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 1379999995 578999999999988764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=208.05 Aligned_cols=294 Identities=15% Similarity=0.121 Sum_probs=192.5
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |+++.+.|+.+....+..+... .++.+.
T Consensus 70 ~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 146 (393)
T PRK05764 70 IPELREAIAAKLKRDNGLDYDPSQ--VIVTTGAKQALYNAFMALL-DPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGE 146 (393)
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHH--EEEeCCcHHHHHHHHHHhc-CCCCEEEecCCCCcchHHHHHHcCCEEEEEecCc
Confidence 677888888876 455665 9999999999999999987 8898 8888888876654444332222 455553
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++ ..+++.+++++ .+++++|++++++||||.++|.++ |.++|+ ++|+++++|++++.
T Consensus 147 ~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~-----------~~~~~ii~De~y~~ 208 (393)
T PRK05764 147 ENGFKLTVEQLEAAI-------TPKTKALILNSPSNPTGAVYSPEELEAIADVAV-----------EHDIWVLSDEIYEK 208 (393)
T ss_pred ccCCcCCHHHHHHhh-------CccceEEEEECCCCCCCcccCHHHHHHHHHHHH-----------HCCcEEEEeccccc
Confidence 32 34455555433 467899999999999999998555 555565 89999999988653
Q ss_pred CC----CCCC-----CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 254 GS----NMLD-----LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 254 g~----~~~d-----l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
.. .... ....+.++++.|++|.+| ++| +|+++.++++++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~i~~~~~~~~~~~~~~----------------------- 264 (393)
T PRK05764 209 LVYDGAEFTSIASLSPELRDRTITVNGFSKAYA-MTGWRLGYAAGPKELIKAMSKLQ----------------------- 264 (393)
T ss_pred eeeCCCCcccHHHcCCCCcCCEEEEecCccccc-CccceeEEEecCHHHHHHHHHHH-----------------------
Confidence 21 1011 122346788999999999 557 799998887766553221
Q ss_pred ccccCCCCChhHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDT-MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~-l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
......++.....++..+++. ........++..+.++.+.+.|+++ +++.+..+.+ +.++++.++
T Consensus 265 -~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~g-------~~~~~~~~~ 330 (393)
T PRK05764 265 -SHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNEI------PGLECPKPEG-------AFYVFPNVS 330 (393)
T ss_pred -hhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhhC------CCCcccCCCc-------ceEEEEecc
Confidence 011123344444555455541 1111111266667777888888876 5677665432 445566665
Q ss_pred cCCCC-ccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 402 HKDGT-YYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 402 ~~~~~-~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
..... ..+..++.+. +.++||.+++|..|.. .+++|+|++.
T Consensus 331 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------------------------~~~vRis~~~-- 373 (393)
T PRK05764 331 KLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA-----------------------------------PGYVRLSYAT-- 373 (393)
T ss_pred cccccccCCHHHHHHHHHHhCCEEEccccccCC-----------------------------------CCEEEEEecC--
Confidence 42111 0112345544 4678999998865421 2789999984
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy16512 480 NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~ 496 (815)
++++++.++++|.+++.
T Consensus 374 ~~~~~~~~i~~l~~~~~ 390 (393)
T PRK05764 374 SLEDLEEGLERIERFLE 390 (393)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 79999999999998765
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=207.01 Aligned_cols=313 Identities=11% Similarity=0.050 Sum_probs=197.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
++++++.+++++|++. .++++|+++|+.+++.++. ++|| ||++...|.....+ ...+...| ...++..
T Consensus 67 ~~~le~~lA~l~g~~~----~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 138 (403)
T PRK07503 67 LALLEQRMASLEGGEA----AVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT--- 138 (403)
T ss_pred HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC---
Confidence 8899999999999864 4555677789999998886 9999 88887777655443 33445566 3333332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 139 d~~~l~~-------~i~~~tklV~le~p~NPtG~~~di~~I~~la~-----------~~gi~lIvD~a~a~~~~~~~l-~ 199 (403)
T PRK07503 139 DPAALKA-------AISDKTRMVYFETPANPNMRLVDIAAVAEIAH-----------GAGAKVVVDNTYCTPYLQRPL-E 199 (403)
T ss_pred CHHHHHH-------hcCccCcEEEEeCCCCCCCeeeCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 3444444 33468999999999999999999999999999 899999999999876543333 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|++|+++++.+ .|+++.++++.++++.... .......++....+.+..
T Consensus 200 ~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~----------------------~~~~g~~~s~~~a~l~l~ 257 (403)
T PRK07503 200 LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGL----------------------KDMTGAVMSPFDAFLLMR 257 (403)
T ss_pred hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhH----------------------HhCcCCCCCHHHHHHHHc
Confidence 5889999999999995543 6788766666555431100 001122333333333333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
++ +.+...+++..+.+..+.+.|++. |.++ ++-|...+. ....+++++|.+.+... . .
T Consensus 258 ~L---~tl~~r~~~~~~na~~~a~~L~~~------p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~--~ 325 (403)
T PRK07503 258 GL---KTLALRMDRHCASAQAVAEWLARH------PAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIA-A--G 325 (403)
T ss_pred Cc---chHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHH-H--H
Confidence 33 333334466667888888888876 4443 222221110 12358899999864211 1 1
Q ss_pred HHHHHhhhcCCcEeccCc---cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGC---HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~---~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+...+.-....++.|. .+.++....+..+++++..+. |.+.+.||+|+|..+.++-++.|
T Consensus 326 ~~~~~~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl~~dl 390 (403)
T PRK07503 326 RRFMNALQLFARAVSLGDAESLAQHPASMTHSTYTPEERAEH---------------GISEGLVRLSVGLEDVADILADL 390 (403)
T ss_pred HHHHHhCCcceeecccCCCCccCcCCCCCccccCCHHHHHhc---------------CCCCCeEEEEEecCCHHHHHHHH
Confidence 123344443333333332 222222223445555443222 56678999999998777777777
Q ss_pred HHHHHHHH
Q psy16512 488 LSFLNQYF 495 (815)
Q Consensus 488 v~~L~~~~ 495 (815)
.++|+...
T Consensus 391 ~~Al~~~~ 398 (403)
T PRK07503 391 AQALDACA 398 (403)
T ss_pred HHHHHHHH
Confidence 77777643
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=213.10 Aligned_cols=341 Identities=11% Similarity=0.054 Sum_probs=210.0
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHH
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~ 139 (815)
+.++....|..+++++.+.+.... ... ..+..... ..++|+.|+++++ +++++ |++|+|+++|+.+
T Consensus 82 ~~~~~~~~P~~~~~~~~~~~~~~~-~~~-~~Y~~~~G----~~~LR~aia~~~~~~~g~~~~~~~--I~it~Ga~~al~~ 153 (481)
T PTZ00377 82 DPSVSSLFPADVVARAKEYLNAIG-GGT-GAYTDSAG----YPFVRKAVAAFIERRDGVPKDPSD--IFLTDGASSGIKL 153 (481)
T ss_pred CccccccCCHHHHHHHHHHHHhCC-Ccc-cCcCcccC----CHHHHHHHHHHHHHhcCCCCChhh--EEEcCCHHHHHHH
Confidence 444566677788877654433211 111 11333333 6788888888874 55666 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
+++++..++|| |++..+.|+.+....+..+... .++++.++ .++++.++++++... ....+++++++++|+||||
T Consensus 154 ~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~k~l~l~~P~NPTG 232 (481)
T PTZ00377 154 LLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAV-RNGITPRALVVINPGNPTG 232 (481)
T ss_pred HHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHH-hcCCCeeEEEEECCCCCCC
Confidence 99998635899 8898988887766655544333 55665432 456677766543100 0112689999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEeccccc----CC-CCCCC----CCCC-------CcEEEEccccc-ccc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GS-NMLDL----KQHQ-------PDFISISFYKM-FGY 278 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~-~~~dl----~~~~-------~D~vv~S~~K~-~g~ 278 (815)
.+++.+++.++++ .|+++++++|+|+++.- +. ....+ ..+. .-+++.|++|. ++
T Consensus 233 ~~~s~e~~~~i~~--------~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~- 303 (481)
T PTZ00377 233 QVLTRDVMEEIIK--------FCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIG- 303 (481)
T ss_pred cCCCHHHHHHHHH--------HHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCccccc-
Confidence 9999655544443 23389999999988642 11 11111 0111 12567899996 46
Q ss_pred CCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH---------
Q psy16512 279 PTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT--------- 344 (815)
Q Consensus 279 p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~--------- 344 (815)
.+| +||+++ ++++++.+.... . ...+++..+..++..+++.
T Consensus 304 ~~GlRiG~~~~~~~p~~li~~l~~~~------------------------~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~ 358 (481)
T PTZ00377 304 ECGRRGGYFELTNIPPEVREQIYKLA------------------------S-INLCSNVVGQLMTGLMCNPPREGDASYP 358 (481)
T ss_pred CCcCceEEEEEeCCCHHHHHHHHHHh------------------------h-eecCCChHHHHHHHHHhCCCCCCcccHH
Confidence 667 799987 666665553221 0 0113455566666565531
Q ss_pred --HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-------cc--CHHHH
Q psy16512 345 --MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-------YY--GYSEV 413 (815)
Q Consensus 345 --l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-------~~--~~~~v 413 (815)
........++.++.++.+.+.|+++ +++.+..|.+ +.++++.+...... .+ +...+
T Consensus 359 ~~~~~~~~~~~~~~~rr~~l~~~L~~~------~g~~~~~p~g-------g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~ 425 (481)
T PTZ00377 359 LYKRERDAIFTSLKRRAELLTDELNKI------EGVSCQPVEG-------AMYAFPRIELPEKAIQEAKERGLAPDVLYC 425 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcEeecCCe-------eEEEEeeccCchhhHHHHHhcCCCcHHHHH
Confidence 1111111134567777888888877 6788776653 44555444311100 00 11124
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.++|.++||.+.+|+.+... ...+++|+|++ .++++++..++.|.+
T Consensus 426 ~~ll~~~gV~v~pG~~F~~~--------------------------------~~~~~~Rls~~--~~~e~l~~~l~rl~~ 471 (481)
T PTZ00377 426 LELLESTGIVVVPGSGFGQK--------------------------------PGTYHFRITIL--PPEEQIEEMVKKIKE 471 (481)
T ss_pred HHHHHHcCEEEeCCcccCCC--------------------------------CCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 57778999999998765321 01368999998 578899999999988
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 472 ~~~ 474 (481)
T PTZ00377 472 FHE 474 (481)
T ss_pred HHH
Confidence 764
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-20 Score=208.20 Aligned_cols=264 Identities=8% Similarity=0.047 Sum_probs=169.4
Q ss_pred HHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+++++++ |. ++++ .|++|+|+++|+..++.++. ++|| |++..++|+.+.......+... .++++.
T Consensus 75 ~~~lr~aia~~~~~~~~~~~~~~~-~i~vt~G~~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 152 (394)
T PRK05942 75 TASFRQAITDWYHRRYGVELDPDS-EALPLLGSKEGLTHLALAYV-NPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKP 152 (394)
T ss_pred CHHHHHHHHHHHHHHHCCCcCCCC-eEEEccChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCC
Confidence 567788888876 43 4441 38899999999999999987 8999 9999988887765444332222 455554
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
++ .++++.+++. +.++++++++++|+||||.+++.+++.++++ .|+++++++|+|+++....
T Consensus 153 ~~~~~~d~~~l~~~-------~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~--------~a~~~~~~iI~De~y~~~~~ 217 (394)
T PRK05942 153 ENDWLIDLSSIPEE-------VAQQAKILYFNYPSNPTTATAPREFFEEIVA--------FARKYEIMLVHDLCYAELAF 217 (394)
T ss_pred ccCCccCHHHHHHh-------ccccceEEEEcCCCCCCCCcCCHHHHHHHHH--------HHHHcCeEEEEeccchhhcc
Confidence 32 3566666553 3467999999999999999999665444433 2238999999999864221
Q ss_pred ---CCCC---CCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 ---NMLD---LKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ---~~~d---l~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
.+.. +.. ....+++.||+|.|| .+| +||+++++++++.++.... ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~-~~GlRiG~i~~~~~l~~~l~~~~~------------------------~~ 272 (394)
T PRK05942 218 DGYQPTSLLEIPGAKDIGVEFHTLSKTYN-MAGWRVGFVVGNRHIIQGLRTLKT------------------------NL 272 (394)
T ss_pred CCCCCCChhhCCCccccEEEEecchhccC-ChhhheeeeecCHHHHHHHHHHHh------------------------hc
Confidence 1112 211 123477889999998 457 8999998887765532210 01
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.+.....++..+++.....-... ++.++.++++.+.|+.. ++.+..+.. +.++++.++..
T Consensus 273 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~-------~~f~~~~~~~~-- 336 (394)
T PRK05942 273 DYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGEL-------GWNIPPTKA-------TMYLWVPCPVG-- 336 (394)
T ss_pred ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe-------eeEEEEECCCC--
Confidence 11334445555556665332221222 66777788888888775 566654432 44667776532
Q ss_pred CccCHHHHH-HhhhcCCcEeccCccC
Q psy16512 406 TYYGYSEVQ-NLANLKKIQLRTGCHC 430 (815)
Q Consensus 406 ~~~~~~~v~-~~l~~~gI~v~~g~~~ 430 (815)
++..++. +.+.++||.+.+|..+
T Consensus 337 --~~~~~~~~~~l~~~gV~v~~g~~f 360 (394)
T PRK05942 337 --MGSTDFALNVLQKTGVVVTPGNAF 360 (394)
T ss_pred --CCHHHHHHHHHHHCCEEEeCChhh
Confidence 1222344 4667899999887543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=206.58 Aligned_cols=320 Identities=14% Similarity=0.088 Sum_probs=208.8
Q ss_pred cchhhHHHHHHHHhhccccCCCC--hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHG--NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s--~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.......... ....... .+++++++++++|.+ +. +++++| ++++..++.++. ++||
T Consensus 48 ~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l----~~~l~~~l~~~~g~~-~~--i~~~sG-~~a~~~a~~~~~-~~gd 118 (385)
T TIGR01825 48 DHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRL----HEELEEKLAKFKKTE-AA--LVFQSG-FNTNQGVLSALL-RKGD 118 (385)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccCcccCCcHH----HHHHHHHHHHHhCCC-cE--EEECcH-HHHHHHHHHHhC-CCCC
Confidence 45666677766654321111111 1222334 778999999999964 33 777777 567777888876 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++....|+++.......... ...+. ..+.+.+++.+. +...+++++|++++++|+||.+.|+++|.++|+
T Consensus 119 ~vi~~~~~~~~~~~~~~~~g~~-~~~~~---~~d~~~l~~~l~---~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~- 190 (385)
T TIGR01825 119 IVLSDELNHASIIDGLRLTKAT-KKIYK---HADMDDLDRVLR---ENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE- 190 (385)
T ss_pred EEEEEccccHHHHHHHHhcCCc-eEEeC---CCCHHHHHHHHH---hhccCCCeEEEEecCCcCCCCccCHHHHHHHHH-
Confidence 777777888776544332211 22221 233444444332 223357899999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++|+|++++.+... +++. .+.|+++.|+||+|+ +.| |+++.+++.++.+....
T Consensus 191 ----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~-~~g-G~~~~~~~~~~~~~~~~- 256 (385)
T TIGR01825 191 ----------RYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIG-VVG-GYAAGHKELIEYLKNRA- 256 (385)
T ss_pred ----------HhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhh-cCC-CEEecCHHHHHHHHHhC-
Confidence 899999999998765322 2332 467899999999998 445 88888777665542110
Q ss_pred cCceEEEEecCCcccccccCcccccc-CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFE-DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
..+. .+..+....+++.++++.+.......++..++++++.+.|+++ +++
T Consensus 257 ----------------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~ 307 (385)
T TIGR01825 257 ----------------------RPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKL-------GYD 307 (385)
T ss_pred ----------------------ccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCC
Confidence 0011 1234556667777888776543333377788899999999876 566
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
++.+. ++++.+.+... .+..++.+.|.++||.++.+.+...+
T Consensus 308 ~~~~~--------~~~~~~~~~~~----~~~~~~~~~L~~~gi~v~~~~~~~~~-------------------------- 349 (385)
T TIGR01825 308 TGGSE--------TPITPVVIGDE----KAAQEFSRRLFDEGIFAQSIVFPTVP-------------------------- 349 (385)
T ss_pred CCCCC--------CCEEEEEECCH----HHHHHHHHHHHHCCcEEcccCCCCCC--------------------------
Confidence 55433 35666554321 11234777777779998644321110
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...++||++++++++++|+++++++|++++.
T Consensus 350 ------~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 350 ------RGTARIRNIPTAEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred ------CCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 0136899999999999999999999999774
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=201.61 Aligned_cols=333 Identities=14% Similarity=0.143 Sum_probs=227.7
Q ss_pred HHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhccCCCc-EEEecCCC
Q psy16512 81 TIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFEFNEGS-FIYLTDNH 158 (815)
Q Consensus 81 l~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~~~~gd-vv~~~~~h 158 (815)
+.+.+.+...+..|+.....++ ++++++.+.++|+++.+ |++ +++.++|.++++++.++..++|+ +++..
T Consensus 19 ~~~~~~~~~~~~~HRs~~F~~i----~~e~~~~L~~l~~~~~~-~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g--- 90 (374)
T TIGR01365 19 SIEELKNAPLGRSHRSKLGKEK----LAEAIKKTREMLGVPAD-YLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE--- 90 (374)
T ss_pred hHHHHhhhhcccCcCCHHHHHH----HHHHHHHHHHHhCCCCC-cEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC---
Confidence 3344444556677888888888 99999999999998533 445 56899999999999998734777 55432
Q ss_pred cchhhHH-HHhhccc-----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcccc
Q psy16512 159 TSVLGMR-ELVKTNQ-----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF 232 (815)
Q Consensus 159 ~s~~~~~-~~~~~~g-----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~ 232 (815)
..-..|. +++++.| .+..+....++++.++. . +.|+++|..+.||+..|+++|. +.
T Consensus 91 ~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~-----------~-~~v~~vhnETSTGv~npv~~i~---~~--- 152 (374)
T TIGR01365 91 SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF-----------K-NDVVFTWNGTTSGVRVPNGDFI---PA--- 152 (374)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC-----------C-CCEEEecCCCchheeccccccc---cc---
Confidence 1122355 7777666 22333344455555432 1 2267999999999999997654 30
Q ss_pred ccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc--cccCc-eEEEEe
Q psy16512 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT--FYGGG-TVKISM 309 (815)
Q Consensus 233 ~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~--~~g~~-~~~~~~ 309 (815)
.++++++||+++++|..+++++ ++|++++|.+|.+++|+|+++++++++++++.... ++.+- ......
T Consensus 153 -------~~~~lliVDavSs~g~~~l~~d--~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~ 223 (374)
T TIGR01365 153 -------DREGLTICDATSAAFAQDLDYH--KLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTK 223 (374)
T ss_pred -------cCCCcEEEEccchhcCCCCChh--HCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhcccc
Confidence 2478999999999999999998 49999999999999999999999999988764421 11100 000000
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
...+. ..........|+++..++++..+++.+.+. |... +|++++++.+++.++++ +.+.++....
T Consensus 224 -~~~~~---~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~l------g~l~~~~~~~- 292 (374)
T TIGR01365 224 -GGKLN---KKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKN------NWIHFLAETP- 292 (374)
T ss_pred -ccchh---hhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC------CCcccCCCCh-
Confidence 00000 001123456678888888888888877765 3333 99999999999999998 3367665321
Q ss_pred CCCCcccceEEEEEecCCC------CccCH-HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 387 GESKYQGNIVNFNLLHKDG------TYYGY-SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~------~~~~~-~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
..++..++++.++...- ...++ .++.+.|.++||.+.+|...
T Consensus 293 --~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~----------------------------- 341 (374)
T TIGR01365 293 --EIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYR----------------------------- 341 (374)
T ss_pred --hhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccc-----------------------------
Confidence 12345667777744211 11223 56888999999999876321
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+..+||+...+.+.+|+++++++|+-++.
T Consensus 342 ------~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 342 ------DAPSGLRIWCGATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred ------cCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence 1136799998888999999999999987664
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=206.41 Aligned_cols=296 Identities=13% Similarity=0.066 Sum_probs=186.9
Q ss_pred HHHHHHHHHhHcCCC--C-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-h
Q psy16512 107 IDQMRTKILQYFNTD--S-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-D 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~--~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~ 180 (815)
.+.+.+.+++++|++ + ++ |++|+|+++|+.++++++. .+|| |++....|+.+..+.+..+... .++++.+ .
T Consensus 72 r~~ia~~l~~~~g~~~~~~~~--i~it~g~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 148 (384)
T PRK12414 72 REALAEKTERLYGARYDPASE--VTVIASASEGLYAAISALV-HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDF 148 (384)
T ss_pred HHHHHHHHHHHhCCCCCCCCc--EEEECChHHHHHHHHHHhc-CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCcccc
Confidence 445566666677875 2 34 9999999999999999997 8999 8888888877655555433222 5555533 2
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc----CCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSN 256 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~ 256 (815)
.++++.+++++ .+++++|++++++||||.+++.+++.++++ .|+++++++++|+++.. +..
T Consensus 149 ~~d~~~l~~~l-------~~~~~~v~i~~p~NPTG~~~s~~~~~~i~~--------~a~~~~~~ii~De~Y~~~~~~~~~ 213 (384)
T PRK12414 149 RVNWDEVAAAI-------TPRTRMIIVNTPHNPSATVFSAADLARLAQ--------LTRNTDIVILSDEVYEHVVFDGAR 213 (384)
T ss_pred ccCHHHHHhhc-------CcccEEEEEcCCCCCCCcCCCHHHHHHHHH--------HHHHCCeEEEEhhhhhhccCCCCC
Confidence 45666665533 467899999999999999988666544443 22389999999998652 211
Q ss_pred CCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 257 MLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 257 ~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
...+... +..+++.||+|.|| .+| +||+++++++++.+..... ....+.
T Consensus 214 ~~~~~~~~~~~~~~i~~~SfSK~~~-~pGlRiG~~v~~~~l~~~l~~~~~------------------------~~~~~~ 268 (384)
T PRK12414 214 HHSMARHRELAERSVIVSSFGKSYH-VTGWRVGYCLAPAELMDEIRKVHQ------------------------FMVFSA 268 (384)
T ss_pred ccCcccCcCccCcEEEEeccccccc-CccceEEEEecCHHHHHHHHHHHh------------------------heecCC
Confidence 1112211 23488899999998 557 7999999887665532210 011233
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+.+...++..+++.-.......+.+++.++.+.+.|++. ++.+..+.+ +.++++.++..... .+.
T Consensus 269 s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~g-------g~~~~~~~~~~~~~-~~~ 333 (384)
T PRK12414 269 DTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELAGS-------RFELLPSEG-------SFFMLARFRHFSDE-SDS 333 (384)
T ss_pred CcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCc-------ceEEEEcccccCCC-CHH
Confidence 445555554544321111111256677788888888876 566654432 34444455431110 112
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.+.++||.+.+|..|... +...+++||+++. ++++++..++.
T Consensus 334 ~~~~~~l~~~gV~v~pg~~f~~~-------------------------------~~~~~~iRis~~~--~~~~~~~~~~r 380 (384)
T PRK12414 334 DFVLRLIRDARVATIPLSAFYTD-------------------------------GTDTGLIRLSFSK--DDATLVEGARR 380 (384)
T ss_pred HHHHHHHHhCCEEEecchhhcCC-------------------------------CCCCCEEEEEecC--CHHHHHHHHHH
Confidence 23446778999999988654221 1113789999994 57888888877
Q ss_pred HHH
Q psy16512 491 LNQ 493 (815)
Q Consensus 491 L~~ 493 (815)
|.+
T Consensus 381 l~~ 383 (384)
T PRK12414 381 LCS 383 (384)
T ss_pred Hhh
Confidence 754
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=206.07 Aligned_cols=309 Identities=11% Similarity=0.056 Sum_probs=206.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
++++++++++++|++.. +++ ++++.|+.+++.++. ++|| ||++...|++.+. +...+...| ...++..
T Consensus 65 ~~~le~~lA~l~g~~~a---v~~-~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 136 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDA---RGF-ASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGR--- 136 (389)
T ss_pred HHHHHHHHHHHhCCCcE---EEE-CCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCC---
Confidence 88999999999998642 555 556679999988886 8999 8888888876554 444555566 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+ ++|++|++++++|+++.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 137 d~~~l~~-------~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~-----------~~gi~vivD~a~a~~~~~~p~-~ 196 (389)
T PRK05968 137 DEEAVAK-------AL-PGAKLLYLESPTSWVFELQDVAALAALAK-----------RHGVVTMIDNSWASPVFQRPI-T 196 (389)
T ss_pred CHHHHHH-------hc-ccCCEEEEECCCCCCCcHHHHHHHHHHHH-----------HcCCEEEEECCCcchhccCch-h
Confidence 3444443 22 46899999999999999999999999999 899999999999877532223 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|++|++++|.+ .|+++.+++++++++.... .+..+..+....+.+..
T Consensus 197 ~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~-----------------------~~~g~~~~~~~A~~~l~ 253 (389)
T PRK05968 197 LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAY-----------------------PYLGAKLSPFEAWLLLR 253 (389)
T ss_pred cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHH-----------------------HhCCCCCChHHHHHHHc
Confidence 5789999999999997755 5777777776655532210 01112233333333333
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC-CCCCC----CCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH-DTDYG----ESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~-~~~~~----~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
+++ .+...+++..+.+..+.+.|+++ |.++.+. |...+ .....+++++|.+.+ + .+...+.+
T Consensus 254 ~L~---tl~~r~~~~~~~a~~la~~L~~~------p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~--~--~~~~~f~~ 320 (389)
T PRK05968 254 GLR---TLPLRMKAHEASALEIARRLKAH------PVVERVCHPALANHPPAGLSGTSGLFSFIFRE--G--IDVRAFAD 320 (389)
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCChHHhCCCCceEEEEEECC--H--HHHHHHHH
Confidence 333 33334577777788899999887 6665443 32100 012357799999873 1 12346888
Q ss_pred hhhcCCcEeccCccCCch--hhhhhcCCC-HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPG--SCQRFLGLS-DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~--~~~~~~g~~-~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
.|...++.++.|..|+-- ....+..+. .+.. .. -|.+.+.||+|+|++++++-++.|.++|+
T Consensus 321 ~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~-~~--------------~gi~~~liR~SvGlE~~~dl~~dl~~al~ 385 (389)
T PRK05968 321 ALKLFRLGVSWGGHESLVVPAEVVLQQKAQPNSA-AR--------------FGVSPRSVRLHVGLEGTEALWADLEQALA 385 (389)
T ss_pred hCCccEEecCCCCCCceeeeCcccccccCCHHHH-Hh--------------cCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 899999999999877721 111111111 1111 11 14456899999999988888888888887
Q ss_pred HH
Q psy16512 493 QY 494 (815)
Q Consensus 493 ~~ 494 (815)
+.
T Consensus 386 ~~ 387 (389)
T PRK05968 386 AA 387 (389)
T ss_pred Hh
Confidence 53
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=208.86 Aligned_cols=298 Identities=12% Similarity=0.123 Sum_probs=186.7
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eE-EcC
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IY-SFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v-~~~ 177 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++.++. ++|| |+++.++|+.+....+..+... .+ +.+
T Consensus 72 ~~~lr~~ia~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~ 148 (398)
T PRK08363 72 LPELREAIVKREKRKNGVDITPDD--VRVTAAVTEALQLIFGALL-DPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIE 148 (398)
T ss_pred cHHHHHHHHHHHHHhcCCCCChhh--EEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCEEEEecccc
Confidence 677888888886 3 56665 9999999999999999997 8999 8888888877755444332221 22 233
Q ss_pred chh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 178 VDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.++ ..+.+.+++ .+.++++++++++++||||..++. ++|.++|+ ++|+++|+|+++..
T Consensus 149 ~~~~~~d~~~l~~-------~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~-----------~~~~~li~Deay~~ 210 (398)
T PRK08363 149 EEGWQPDIDDIRK-------KITEKTKAIAVINPNNPTGALYEKKTLKEILDIAG-----------EHDLPVISDEIYDL 210 (398)
T ss_pred ccCCcCCHHHHHh-------hCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHH-----------HcCeEEEEhhhhhh
Confidence 322 244555544 234678999999999999999994 45556666 89999999998653
Q ss_pred CC---CCC---CCCCCCCcEEEEccccccccCCc--ceEEEE--ecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 254 GS---NML---DLKQHQPDFISISFYKMFGYPTG--LGALIV--KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 254 g~---~~~---dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~--~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
-. ... .+.....-+++.||+|+|+.| | +||+++ +++.++.+........
T Consensus 211 ~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~-GlRiG~~~~~~~~~~~~~l~~~~~~~~-------------------- 269 (398)
T PRK08363 211 MTYEGKHVSPGSLTKDVPVIVMNGLSKVYFAT-GWRLGYIYFVDPEGKLAEVREAIDKLA-------------------- 269 (398)
T ss_pred hccCCcccCHHHcCcCCcEEEEecchhccCCc-cceEEEEEEeCcHHHHHHHHHHHHHHh--------------------
Confidence 11 011 111112346678999998844 6 899998 4554443322210000
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE-EEe
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF-NLL 401 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f-~~~ 401 (815)
.. ..+.+.+...++..++....+.-.. .+++++.++++.+.|.++ +++.+..+. ++++.+ .++
T Consensus 270 ~~-~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~--------g~~~~~~~l~ 334 (398)
T PRK08363 270 RI-RLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNEI------PGISTTKPQ--------GAFYIFPRIE 334 (398)
T ss_pred cc-cccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhcC------CCCEecCCC--------eEEEEEEEec
Confidence 00 0133444555554555321111111 266777788888888776 566665443 444444 565
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
..... -+...+.+.|.++||.+++|..+.. ...+++|+|++ .++
T Consensus 335 ~~~~~-~~~~~~~~~l~~~gV~v~~g~~f~~---------------------------------~~~~~iRis~~--~~~ 378 (398)
T PRK08363 335 EGPWK-DDKEFVLDVLHEAHVLFVHGSGFGE---------------------------------YGAGHFRLVFL--PPV 378 (398)
T ss_pred cCCCC-CHHHHHHHHHHhCCEEEeCchhhCC---------------------------------CCCCeEEEEec--CCH
Confidence 31100 0122345667899999998865421 01379999996 468
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
+++++.++.|.+++.+
T Consensus 379 ~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 379 EILEEAMDRFEEFMRE 394 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999887643
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=207.67 Aligned_cols=333 Identities=12% Similarity=0.045 Sum_probs=205.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
...+++.++++.|.+. .++++|+++|+..++.++. ++|| ||++...|+..+. +...+...| .+.++. .
T Consensus 66 ~~~Le~~lA~leg~~~----al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~---~ 137 (431)
T PRK08248 66 TDVFEKRIAALEGGIG----ALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP---S 137 (431)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC---C
Confidence 7889999999999643 6888899999999999886 8999 8888888866544 445566667 444443 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+....++ .
T Consensus 138 d~e~l~~-------ai~~~tklV~l~sp~NPtG~v~di~~I~~la~-----------~~gi~vIvD~t~a~~~~~~pl-~ 198 (431)
T PRK08248 138 DPENFEA-------AITDKTKALFAETIGNPKGDVLDIEAVAAIAH-----------EHGIPLIVDNTFASPYLLRPI-E 198 (431)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEeCCCCccccCChh-H
Confidence 4444444 33467999999999999999999999999999 899999999998876554444 5
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEecccccccC-cc---cccCceEEE-EecCC----cc-cccccCccccccCCCCC
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVKQKSAHVLN-KT---FYGGGTVKI-SMANE----NF-HIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~-~~---~~g~~~~~~-~~~~~----~~-~~~~~~~~~~~~~gt~~ 331 (815)
+++|+++.|+||++|+|.. +|++++...-..... .. ......... ..... .. .........+.....++
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 278 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALS 278 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCC
Confidence 7899999999999995532 777777533110000 00 000000000 00000 00 00000000111123444
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC----------CCCcccceEEEEE
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG----------ESKYQGNIVNFNL 400 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~----------~~~~~~~i~~f~~ 400 (815)
....+.+..+++.+. .++++..+.+..+.+.|++. |.++ ++-|...+ .+...|++++|.+
T Consensus 279 p~~a~l~~rgl~tl~---~R~~~~~~nA~~la~~L~~~------p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l 349 (431)
T PRK08248 279 PFNSFLLLQGLETLH---LRMERHSENALAVAKFLEEH------EAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGI 349 (431)
T ss_pred HHHHHHHhcCcCcHH---HHHHHHHHHHHHHHHHHHhC------CCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEe
Confidence 444444444444332 34477888888899999887 4443 33222111 0124588999999
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
.+.. +. ...+.+.|+-..+.++.|.. ..++....+..+++++..+. |.+++.||+|+|.
T Consensus 350 ~~~~-~~--~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~---------------gi~~~liRlsvGl 411 (431)
T PRK08248 350 KGGV-EA--GKKLIDSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAA---------------GVTPGLVRLSVGT 411 (431)
T ss_pred cCCH-HH--HHHHHHhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhc---------------CCCCCeEEEEecc
Confidence 6421 11 22456666666666666642 22333334555666554322 5667999999998
Q ss_pred CCCHHHHHHHHHHHHH
Q psy16512 478 ASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 478 ~~t~edi~~lv~~L~~ 493 (815)
.+.++-++.|.++|++
T Consensus 412 Ed~~dL~~Dl~~Al~~ 427 (431)
T PRK08248 412 EAIDDILDDLRQAIRQ 427 (431)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7666666666666654
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=208.47 Aligned_cols=295 Identities=12% Similarity=0.057 Sum_probs=186.7
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+++++++ | +++++ +|++|+|+++|+.+++.++. .+|| |++..+.|+.+....+..+... .++++.
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 147 (388)
T PRK07366 70 TLDFREAAAQWYEQRFGLAVDPET-EVLPLIGSQEGTAHLPLAVL-NPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRA 147 (388)
T ss_pred CHHHHHHHHHHHHHhhCCcCCCcC-eEEECCCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCC
Confidence 567888888876 4 55551 39999999999999999988 8999 8888887777665555443333 556654
Q ss_pred hhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 179 DDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 179 ~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
++. .+.+.+.+ ...+++++++++++|||||..++.+++.++++ .|+++++++|+|+++.-
T Consensus 148 ~~~~~~d~~~l~~-------~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y~~~~~ 212 (388)
T PRK07366 148 ENDFLPVFADIPT-------EVLAQARLMVLSYPHNPTTAIAPLSFFQEAVA--------FCQQHDLVLVHDFPYVDLVF 212 (388)
T ss_pred ccCCCCCHHHHHH-------hhcccceEEEEeCCCCCCCccCCHHHHHHHHH--------HHHHcCeEEEEecchhhccc
Confidence 432 33334433 22356899999999999999999888777655 34489999999988542
Q ss_pred -CCC-CCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 254 -GSN-MLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 254 -g~~-~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
+.. ...+... ..-+++.||+|.|| .+| +||++.++++++.+...... +
T Consensus 213 ~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g-~~GlRiG~~v~~~~li~~l~~~~~~-----------------------~ 268 (388)
T PRK07366 213 DGEVEPPSILQADPEKSVSIEFFTLSKSYN-MGGFRIGFAIGNAQLIQALRQVKAV-----------------------V 268 (388)
T ss_pred CCCCCCCChhhCCCCcccEEEEeecccccC-CcchhheehcCCHHHHHHHHHHHhh-----------------------c
Confidence 211 1112121 12367789999998 447 89999988877655322100 0
Q ss_pred cCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 326 EDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
..++.+.. ..++.+++....+.-.. .+++++.++++.+.|+++ ++....|.+ +.++++.++..-
T Consensus 269 ~~~~~~~~-~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~~-------~~~~~~p~~-------g~f~~~~~~~~~ 333 (388)
T PRK07366 269 DFNQYRGI-LNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQI-------GWPVPLPEA-------TMYVWAKLPEPW 333 (388)
T ss_pred ccCCCHHH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe-------eEEEEEECCccc
Confidence 01111111 22222333211111111 266677778888888776 455444432 677777776421
Q ss_pred CCccCHHHHHH-hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 405 GTYYGYSEVQN-LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 405 ~~~~~~~~v~~-~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. .+..++.+ ++.++||.+++|..+.. ...+++||+++. +.++
T Consensus 334 ~--~~~~~~~~~l~~~~gv~v~pg~~f~~---------------------------------~~~~~iRi~~~~--~~~~ 376 (388)
T PRK07366 334 Q--GNSVEFCTQLVAQTGVAASPGSGFGK---------------------------------SGEGYVRFALVH--DPDI 376 (388)
T ss_pred C--CCHHHHHHHHHHhCCEEEeCchHhCc---------------------------------CCCCeEEEEecC--CHHH
Confidence 1 01123544 45788999998865421 013789999983 6888
Q ss_pred HHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQY 494 (815)
Q Consensus 484 i~~lv~~L~~~ 494 (815)
++..++.|.++
T Consensus 377 l~~~l~rl~~~ 387 (388)
T PRK07366 377 LEEAVERIAAF 387 (388)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=205.33 Aligned_cols=306 Identities=10% Similarity=0.014 Sum_probs=200.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
...++++|+++.|.+. .++++++++|+.+++.++. ++|| ||++...|.....+. ..+.+.| ...++..
T Consensus 64 ~~~le~~la~LEg~~~----a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~--- 135 (395)
T PRK08114 64 HFSLQEAMCELEGGAG----CALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPL--- 135 (395)
T ss_pred HHHHHHHHHHHhCCCe----EEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCC---
Confidence 7889999999998754 5666779999999999987 9999 888887776665533 4556667 3333321
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC--CeEEEEecccccCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~~~dl 260 (815)
+.+.+++ .++++|++|++++++||+|.+.|+++|+++|| ++ |++++||++++.|.. ++.
T Consensus 136 d~~~l~~-------~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~-----------~~g~g~~lvVDnT~a~p~~-~~p 196 (395)
T PRK08114 136 IGADIAK-------LIQPNTKVVFLESPGSITMEVHDVPAIVAAVR-----------SVNPDAVIMIDNTWAAGVL-FKA 196 (395)
T ss_pred CHHHHHH-------hcCCCceEEEEECCCCCCCEeecHHHHHHHHH-----------HhCCCCEEEEECCCccccc-cCH
Confidence 2334444 34578999999999999999999999999999 65 599999999999977 788
Q ss_pred CCCCCcEEEEccccccccCC--cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPT--GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~--G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..+++|+++.|.||+++++. +.|+++.+++..+.++... ......++....+.+
T Consensus 197 l~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~------------------------~~~G~~~~p~~a~l~ 252 (395)
T PRK08114 197 LDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS------------------------YLMGQMVDADTAYMT 252 (395)
T ss_pred HHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH------------------------HhccCCCCHHHHHHH
Confidence 88899999999999999886 3676766665433332111 112234444444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecC-CCCc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHK-DGTY 407 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~-~~~~ 407 (815)
..+++.+. .++++..+.+..+.+.|++. |.++ ++-|.-.+ .....+++++|.+.+. ..+.
T Consensus 253 ~rgl~TL~---lR~~~~~~na~~va~~L~~h------p~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~ 323 (395)
T PRK08114 253 SRGLRTLG---VRLRQHEESSLKVAEWLAEH------PEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQ 323 (395)
T ss_pred HcCCCcHH---HHHHHHHHHHHHHHHHHHcC------CCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHH
Confidence 44544433 34578888888888888877 4443 33332100 0124589999998642 1111
Q ss_pred cCHHHHHHhhhcCCcEeccCccCC-----chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCN-----PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
...+.+.|+...+.++.|..-+ .+....+.. +.+ ..+..++.||+|+|..+.++
T Consensus 324 --~~~f~~~l~l~~~a~SlGg~~SLi~~~~~~~~~~~~-~~~------------------~~~~~~~liRlSvGlEd~~D 382 (395)
T PRK08114 324 --LANYLDNFSLFSMAYSWGGFESLILANQPEEIAAIR-PAG------------------EVDFTGTLIRLHIGLEDVDD 382 (395)
T ss_pred --HHHHHHhCCcceeecccCCccceeccCCchhhhccC-Chh------------------HhcCCCCeEEEEeccCCHHH
Confidence 1234555555556666663221 111111111 111 01334589999999876666
Q ss_pred HHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQ 493 (815)
Q Consensus 483 di~~lv~~L~~ 493 (815)
-++.|-++|.+
T Consensus 383 Li~Dl~~Al~~ 393 (395)
T PRK08114 383 LIADLAAGFAR 393 (395)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=204.52 Aligned_cols=287 Identities=13% Similarity=0.144 Sum_probs=188.8
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc--EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
..++|+.|+++++ +++++ |++|+|+++++..++.++. .+|+ |++..+.|+.+....+..+... .++
T Consensus 68 ~~~Lr~aia~~~~~~~~~~~~v~~~~--I~it~Ga~~al~~~~~~~~-~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 144 (374)
T PRK02610 68 HEALKQAIAEYVNESAAGSSQITPAN--ISVGNGSDELIRSLLIATC-LGGEGSILVAEPTFSMYGILAQTLGIPVVRVG 144 (374)
T ss_pred hHHHHHHHHHHhCccccccCCCCHHH--EEEcCChHHHHHHHHHHHc-CCCCCeEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 6789999999987 67776 9999999999998887776 4553 8888877665544444333222 444
Q ss_pred cCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 176 FSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 176 ~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
.+.+ ..+++++++++++ +...+++++|++++++||||..++.+++.++++ . .+++++|+|+++.--
T Consensus 145 ~~~~~~~~d~~~l~~~~~---~~~~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~--------~--~~~~~iI~De~Y~~~ 211 (374)
T PRK02610 145 RDPETFEIDLAAAQSAIE---QTQNPPVRVVFVVHPNSPTGNPLTAAELEWLRS--------L--PEDILVVIDEAYFEF 211 (374)
T ss_pred CCcccCCCCHHHHHHHHH---hhcCCCceEEEEeCCCCCCCCCCCHHHHHHHHh--------c--cCCcEEEEecccccc
Confidence 4432 3566666665432 111247899999999999999999999988876 1 358999999986521
Q ss_pred C--CC-CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 S--NM-LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~--~~-~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
. .. ..+.....-+++.||+|.|| .+| +||++.++++++.+.... ...+
T Consensus 212 ~~~~~~~~~~~~~~~ivi~SfSK~~g-~~GlRiG~~v~~~~l~~~l~~~~--------------------------~~~~ 264 (374)
T PRK02610 212 SQTTLVGELAQHPNWVILRTFSKAFR-LAAHRVGYAIGHPELIAVLEKVR--------------------------LPYN 264 (374)
T ss_pred CccchHHHHhcCCCEEEEEecchhcc-CcccceeeeecCHHHHHHHHHhc--------------------------CCCC
Confidence 1 11 11112223477889999998 457 899999887766553211 0113
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+.....++..+++.....-..+++..+.++.+.+.|+++ +++.+. +.+ ++++++.++.. .+
T Consensus 265 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~-p~~-------g~f~~~~l~~~----~~ 326 (374)
T PRK02610 265 LPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQEL------PQLRVW-PSA-------ANFLYLRLSQD----AA 326 (374)
T ss_pred CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC------CCcEeC-CCc-------ceEEEEeCCCC----CC
Confidence 3445555555555433322222233344466677777766 566654 332 67777777542 22
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
..++.+.|.++||.++.+ .+++|+|++ +.++++++++
T Consensus 327 ~~~~~~~l~~~gi~v~~~----------------------------------------~~~lRls~~---~~~~~~~~l~ 363 (374)
T PRK02610 327 LAALHQALKAQGTLVRHT----------------------------------------GGGLRITIG---TPEENQRTLE 363 (374)
T ss_pred HHHHHHHHHHCCEEEEeC----------------------------------------CCeEEEeCC---CHHHHHHHHH
Confidence 345778889999998632 268999998 4678999999
Q ss_pred HHHHHHhh
Q psy16512 490 FLNQYFLQ 497 (815)
Q Consensus 490 ~L~~~~~~ 497 (815)
+|++++.+
T Consensus 364 ~l~~~l~~ 371 (374)
T PRK02610 364 RLQAALTQ 371 (374)
T ss_pred HHHHHHhh
Confidence 99987754
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=206.89 Aligned_cols=280 Identities=15% Similarity=0.141 Sum_probs=186.9
Q ss_pred HHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhh
Q psy16512 108 DQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDAR 182 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~ 182 (815)
.++|+.+++++|+++++ |++|+|+++++.+++.++. ++|| |++..+.|+.+.. .++..| .++.+.+..+
T Consensus 74 ~~lr~~ia~~~~~~~~~--i~~t~G~~~~l~~~~~~~~-~~gd~vli~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~ 147 (371)
T PRK05166 74 RALREAIAARTGVPADR--IILGNGSEDLIAVICRAVL-RPGDRVVTLYPSFPLHED---YPTMMGARVERVTVTPDLGF 147 (371)
T ss_pred HHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHhc-CCCCEEEEcCCChHHHHH---HHHHcCCeEEEeecCCCCCC
Confidence 37899999999998877 9999999999999999987 8999 7777766655433 344445 4555555566
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLD 259 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~d 259 (815)
+.+++++++ .+++++|++++++||||.++|.+++.++++ .|+ .++++++|+++..-. ....
T Consensus 148 ~~~~l~~~~-------~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~--------~~~-~~~~ii~De~y~~~~~~~~~~~ 211 (371)
T PRK05166 148 DLDALCAAV-------ARAPRMLMFSNPSNPVGSWLTADQLARVLD--------ATP-PETLIVVDEAYAEYAAGDDYPS 211 (371)
T ss_pred CHHHHHHhh-------hcCCCEEEEeCCCCCCCCCCCHHHHHHHHH--------hCC-CCcEEEEECcHHHhcCCcCccc
Confidence 666666533 357899999999999999999999999887 233 478999999864221 0011
Q ss_pred ----CCCC-CCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 260 ----LKQH-QPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 260 ----l~~~-~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
+... ...+++.||+|.|| .+| +||+++. +++.+.+.... .....+
T Consensus 212 ~~~~~~~~~~~vi~i~SfSK~~~-l~GlRiG~~i~~~~~l~~~~~~~~--------------------------~~~~~~ 264 (371)
T PRK05166 212 ALTLLKARGLPWIVLRTFSKAYG-LAGLRVGYGLVSDPELVGLLDRVR--------------------------TPFNVN 264 (371)
T ss_pred HHHHHhhcCCCEEEEeechHhhh-cchhheeeeecCCHHHHHHHHHhc--------------------------cCCCCC
Confidence 1111 23478889999999 557 7998874 45544432111 011234
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
..+..++..++..-.......+..++.++++.+.|++. ++.+. +. .++++++.+.. + ..
T Consensus 265 ~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~-p~-------~g~fl~~~~~~-~-----~~ 323 (371)
T PRK05166 265 GAAQAAALAALDDEEHLAKGVALALAERERLKKELAEM-------GYRIA-PS-------RANFLFFDARR-P-----AS 323 (371)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-------cCeeC-CC-------cCCEEEEeCCC-C-----HH
Confidence 44444444444321111111256667778888888876 45543 22 25666666432 1 23
Q ss_pred HHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
++.+.|.++||.+++|... +. .+++||+++ +.++.+++.++|
T Consensus 324 ~l~~~l~~~gi~v~p~~~~----------------------------------~~-~~~iRi~~~---~~~~~~~l~~~l 365 (371)
T PRK05166 324 AVAEALLRQGVIVKPWKQP----------------------------------GF-ETFIRVSIG---SPEENDHFVAAL 365 (371)
T ss_pred HHHHHHHHCCeEEecCCCC----------------------------------CC-CCeEEEEcC---CHHHHHHHHHHH
Confidence 5777887889999886421 01 379999998 678899999999
Q ss_pred HHHH
Q psy16512 492 NQYF 495 (815)
Q Consensus 492 ~~~~ 495 (815)
++++
T Consensus 366 ~~i~ 369 (371)
T PRK05166 366 DKVL 369 (371)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=206.50 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=203.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+.+++.+++++|++. .+++++++.|+.+++.++. ++|| ||++...|...+.+. ..+.+.| ...++ +..
T Consensus 71 ~~~Le~~lA~l~g~~~----av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd--d~~ 143 (436)
T PRK07812 71 QDVVEQRIAALEGGVA----ALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE--DPD 143 (436)
T ss_pred HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC--CCC
Confidence 7889999999999865 5666777889999999987 8999 888887887765533 3345556 33333 112
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++.+++||+|.+.|+++|.++|+ ++|++++||++++.+.....+ .
T Consensus 144 d~e~l~~-------ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~-----------~~gi~liVD~t~a~~~~~~pl-~ 204 (436)
T PRK07812 144 DLDAWRA-------AVRPNTKAFFAETISNPQIDVLDIPGVAEVAH-----------EAGVPLIVDNTIATPYLIRPL-E 204 (436)
T ss_pred CHHHHHH-------hCCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 4444444 34578999999999999999999999999999 899999999999887664444 5
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEecccccccCcccccCceEEEEecCCcccc-------------cccCccccccCC
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI-------------KKDGLFEKFEDG 328 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~-------------~~~~~~~~~~~g 328 (815)
+++|+++.|+||++|++.+ +|.+++.........+.+..... +...+.. .......+..++
T Consensus 205 ~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 279 (436)
T PRK07812 205 HGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTT-----PDPSYHGVVFAELGPPAYALKARVQLLRDLGS 279 (436)
T ss_pred cCCCEEEEecccccCCCCCeEEEEEEcCCcccccccccccccc-----CCcccccchhhhcchhHHHHHHHHHHHHhcCC
Confidence 7899999999999995533 67777754322111111100000 0000000 000000112233
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC----------CCCcccceEE
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG----------ESKYQGNIVN 397 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~----------~~~~~~~i~~ 397 (815)
.++....+.+..+++. +..++++..+.+..+.+.|++. |.++ ++-|...+ .+...|++++
T Consensus 280 ~l~p~~a~l~~rgl~t---L~~R~~~~~~nA~~la~~L~~~------p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~s 350 (436)
T PRK07812 280 AISPFNAFLIAQGLET---LSLRIERHVANAQRVAEFLEAR------DEVASVNYAGLPSSPWYERAKRLAPKGTGAVLS 350 (436)
T ss_pred CCCHHHHHHHhcCcCc---HHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhCcCCCceEEE
Confidence 3444444433334333 3334578888888888889887 4442 33331100 0134689999
Q ss_pred EEEecCCCCccCHHHHHHhhhcCCcEeccCc---cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 398 FNLLHKDGTYYGYSEVQNLANLKKIQLRTGC---HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 398 f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~---~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
|.+.+. .+. ...+.+.|....+.++.|. .+.++....+..++++..... |..++.||+|
T Consensus 351 f~l~~~-~~~--~~~f~~~l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~---------------gi~~~liRlS 412 (436)
T PRK07812 351 FELAGG-VEA--GKAFVNALTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLAT---------------GVTPGLVRLA 412 (436)
T ss_pred EEecCC-HHH--HHHHHHhCCcceEecccCCCcceeeCCCCCCcccCCHHHHHhc---------------CCCCCeEEEE
Confidence 999642 111 2246666666666665553 222333334455555443222 5667899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy16512 475 YGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~ 493 (815)
+|..+.++-++.|.++|++
T Consensus 413 vGlEd~~dli~dl~~Al~~ 431 (436)
T PRK07812 413 VGIEGIDDILADLEAGFAA 431 (436)
T ss_pred eccCCHHHHHHHHHHHHHh
Confidence 9987665556666666654
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=207.28 Aligned_cols=298 Identities=14% Similarity=0.128 Sum_probs=187.7
Q ss_pred HHHHHHHHHhHc----C--CCCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N--TDSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | ++++ + |++|+|+++|+.+++.++. ++|| |+++...|+.+..+....+... .++.+
T Consensus 67 ~~~lr~~ia~~l~~~~g~~~~~~~~--I~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 143 (387)
T PRK07683 67 LLELRKAACNFVKDKYDLHYSPESE--IIVTIGASEAIDIAFRTIL-EPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTR 143 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCc--EEEeCChHHHHHHHHHHhC-CCCCEEEEcCCCccchHHHHHHcCCEEEEeecC
Confidence 667888888876 3 3555 5 9999999999999999987 8999 8888877776655544432222 44554
Q ss_pred chh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 178 VDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
.++ .++.+.+++ .+.++++++++++++||||..++.+++.++++ .|+++|+++|+|+++....
T Consensus 144 ~~~~~~~~~~l~~-------~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~--------~~~~~~~~ii~De~y~~~~~ 208 (387)
T PRK07683 144 STGFRLTAEALEN-------AITEKTRCVVLPYPSNPTGVTLSKEELQDIAD--------VLKDKNIFVLSDEIYSELVY 208 (387)
T ss_pred cccCCCCHHHHHH-------hcCcCceEEEEeCCCCCCCcCCCHHHHHHHHH--------HHHHcCeEEEEeccccccee
Confidence 332 234444444 23457899999999999999999665544443 2338999999999876422
Q ss_pred --CCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 256 --NMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 256 --~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
.+..+..+ +..+++.|++|.||.| | +||+++++++++.+.... .+..
T Consensus 209 ~~~~~~~~~~~~~~~~vi~~~s~SK~~~~p-GlRiG~i~~~~~l~~~~~~~~------------------------~~~~ 263 (387)
T PRK07683 209 EQPHTSIAHFPEMREKTIVINGLSKSHSMT-GWRIGFLFAPSYLAKHILKVH------------------------QYNV 263 (387)
T ss_pred CCCcCChhhccCCcCCeEEEeeccccccCc-cceeEEEEcCHHHHHHHHHHH------------------------Hhcc
Confidence 11122222 2458889999999944 7 899999888766553211 0111
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
...+..+..++...++.-...-.. .++.++.++++.+.|.+. ++.+..+.+ +.+++..++...
T Consensus 264 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~-------~~~~~~~~~~~~-- 327 (387)
T PRK07683 264 TCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLISM-------GLDVEKPTG-------AFYLFPSIGHFT-- 327 (387)
T ss_pred CCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCe-------eEEEEEecccCC--
Confidence 122333333333333221111111 256677778888888775 455554432 334444444311
Q ss_pred ccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 407 YYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 407 ~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
++..++. +++.++||.+.+|..+.. ...+++||+++. +++++.
T Consensus 328 -~~~~~~~~~ll~~~gI~v~pg~~f~~---------------------------------~~~~~~Ri~~~~--~~~~~~ 371 (387)
T PRK07683 328 -MSSFDFALDLVEEAGLAVVPGSAFSE---------------------------------YGEGYVRLSYAY--SIETLK 371 (387)
T ss_pred -CCHHHHHHHHHHhCCEEEcCchhhCC---------------------------------CCCCeEEEEecC--CHHHHH
Confidence 1112344 557889999998865421 013799999995 688999
Q ss_pred HHHHHHHHHHhhcC
Q psy16512 486 YFLSFLNQYFLQQA 499 (815)
Q Consensus 486 ~lv~~L~~~~~~~~ 499 (815)
..++.|.+++.++.
T Consensus 372 ~al~~l~~~l~~~~ 385 (387)
T PRK07683 372 EGLDRLEAFLQQKA 385 (387)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998876543
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=207.54 Aligned_cols=321 Identities=12% Similarity=0.076 Sum_probs=205.5
Q ss_pred chhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CCCc
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGS 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~gd 150 (815)
++++.+++.+++.....+...+. ...... ..++++.+++++|.+ + .++++++++|+..++..+.. .+++
T Consensus 61 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~----~~~Le~~la~~~g~~-~---~l~~~sG~~an~~ai~~l~~~~~~~ 132 (402)
T TIGR01821 61 HPEVLQAMHETLDKYGAGAGGTRNISGTNIP----HVELEAELADLHGKE-S---ALVFTSGYVANDATLATLAKIIPGC 132 (402)
T ss_pred CHHHHHHHHHHHHHcCCCCcchhhhhCCcHH----HHHHHHHHHHHhCCC-e---EEEECchHHHHHHHHHHhhCCCCCC
Confidence 46678888777754322222111 122333 788999999999963 2 45555567888888887751 3677
Q ss_pred EEEec-CCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcC-CCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 FIYLT-DNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMR-HSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 vv~~~-~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
+|+.+ ..|.+........+.. ...+... +.+.+++.++ ..+ +++++|++++++|++|.+.|+++|.++|+
T Consensus 133 ~v~~~~~~h~s~~~~~~~~g~~-~~~~~~~---d~~~l~~~l~----~~~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~ 204 (402)
T TIGR01821 133 VIFSDELNHASMIEGIRHSGAE-KFIFRHN---DVAHLEKLLQ----SVDPNRPKIIAFESVYSMDGDIAPIEEICDLAD 204 (402)
T ss_pred EEEEcchHhHHHHHHHHHcCCe-EEEECCC---CHHHHHHHHH----hccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 55554 5787765443322111 2222211 2333343332 222 35899999999999999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCC-CC--C-CC----CCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSN-ML--D-LK----QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~--d-l~----~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++++|++|+.|.. +. . .. ...+|+++.|++|.|| ..| ||++.++++++.+.....
T Consensus 205 -----------~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~G-G~i~~~~~~~~~l~~~~~ 271 (402)
T TIGR01821 205 -----------KYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFG-VVG-GYIAASRKLIDAIRSYAP 271 (402)
T ss_pred -----------HcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhc-cCC-ceeecCHHHHHHHHHhCc
Confidence 89999999999986542 11 0 00 1136889999999999 445 788888777655432110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
+ ....++.+...++++.++++.+.......++..++++++.+.|+++ ++.+
T Consensus 272 ~----------------------~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 322 (402)
T TIGR01821 272 G----------------------FIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEAL-------GIPV 322 (402)
T ss_pred C----------------------ceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHc-------CCCc
Confidence 0 0112345666777777888887765222366678899999999886 4554
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
+.+. ++++.+.+.... ...++.+.| .++||.++...+...+
T Consensus 323 ~~~~--------~~i~~i~~~~~~----~a~~~~~~L~~~~Gi~v~~~~~p~~~-------------------------- 364 (402)
T TIGR01821 323 IPNP--------SHIVPVIIGDAA----LCKKVSDLLLNKHGIYVQPINYPTVP-------------------------- 364 (402)
T ss_pred CCCC--------CCEEEEEeCCHH----HHHHHHHHHHhcCCEEEEeECCCCCC--------------------------
Confidence 4332 567777654211 112366665 5679999864322111
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
....++|++++.++|++|+++++++|++++.
T Consensus 365 ------~g~~~lRis~~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 365 ------RGTERLRITPTPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred ------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 0125799999999999999999999999764
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=201.64 Aligned_cols=303 Identities=17% Similarity=0.226 Sum_probs=198.2
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhcccc-CCCChhhhhhhhhhhHHHHHHHHHhHcC---CCCCceeEEecCCchhh
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFS-HPHGNSVLSDFCVSEIDQMRTKILQYFN---TDSDHYSVIFTSGATSA 136 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~-np~s~~~~~~~~~~~~~~~r~~la~~~g---~~~~~~~iv~t~g~t~a 136 (815)
.+.|+.+... .+++.+.+++.+.+....+. .|. .. ..++|++++++++ .++++ |++|+|++++
T Consensus 21 ~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~------~~----~~~Lr~aia~~~~~~~~~~~~--i~it~Ga~~~ 88 (335)
T PRK14808 21 RTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYD------SP----DEELIEKILSYLDTDFLSKNN--VSVGNGADEI 88 (335)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------CC----hHHHHHHHHHHhCCCCCCcce--EEEcCCHHHH
Confidence 3445544444 34566777766654321111 121 12 6789999999998 77776 9999999999
Q ss_pred HHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 137 IKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 137 l~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
+.+++.++ ..+++..+.|+.+....+.++... .++.+.++..+.. . . .+++++++++||||||
T Consensus 89 i~~~~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~--~---------~-~~~~~i~i~nP~NPTG 152 (335)
T PRK14808 89 IYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEV--N---------V-GEGDVVFIPNPNNPTG 152 (335)
T ss_pred HHHHHHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChh--H---------c-cCCCEEEEeCCCCCCC
Confidence 99999887 248888766665555444443332 4555443322111 1 1 2479999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCC-CCCCCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
..++.+++.++++ +++++|+|+++.- +....+ +.....-+++.|++|.|| .+| +||++.+++
T Consensus 153 ~~~s~~~l~~l~~------------~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~-l~GlRvG~~v~~~~ 219 (335)
T PRK14808 153 HVFEREEIERILK------------TGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFS-LAAQRIGYVVSSEK 219 (335)
T ss_pred CCcCHHHHHHHHh------------cCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhcc-CcccceEEEEeCHH
Confidence 9999999999986 6899999998642 111111 112234577889999999 557 899999988
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.+.... ...+.+.++..++..+++.........+...+.++++.+.|+++
T Consensus 220 ~~~~l~~~~--------------------------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~- 272 (335)
T PRK14808 220 FIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM- 272 (335)
T ss_pred HHHHHHHhc--------------------------CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 776553211 01133445555555555432222112255566677888888876
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
++.++.+. ++++++.++..+. .++.+.|.++||.++. |
T Consensus 273 ------g~~~~~~~--------g~f~~~~l~~~~~-----~~~~~~l~~~Gi~V~~---~-------------------- 310 (335)
T PRK14808 273 ------GYRITDSR--------GNFVFIFMEKEEK-----ERLLEHLRAKNIAVRS---F-------------------- 310 (335)
T ss_pred ------CCEECCCC--------CeEEEEeCCCccH-----HHHHHHHHHCCeEEEE---C--------------------
Confidence 56666443 6788887764322 3478888999999983 1
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
..++|||++ +.+++++++++|+++
T Consensus 311 -----------------~~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 311 -----------------REGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred -----------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence 146999998 789999999999863
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=219.49 Aligned_cols=341 Identities=12% Similarity=0.095 Sum_probs=238.0
Q ss_pred chhhhhhhhcccc----cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 60 KDICYLDYTGAGV----YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 60 ~~~iyLd~a~~~~----~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
++.+|+++.+.+. .|..+.+++.+.........|-. .+..+...+.+.+.+..+++++|+++++ +.++.|+|+
T Consensus 100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYq-aEisQG~lqal~~~Qt~ia~LtG~~~an--aSL~d~aTA 176 (993)
T PLN02414 100 KNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQ-AEIAQGRLESLLNYQTMITDLTGLPMSN--ASLLDEGTA 176 (993)
T ss_pred cCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHhCCChhh--EeecCChHH
Confidence 3456888888887 66666677665432111112221 2223444455889999999999999988 999999999
Q ss_pred hHHHHHhhhccCCC--c-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 136 AIKTVSEYFEFNEG--S-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 136 al~~~~~al~~~~g--d-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+.++++.++.+.+| + |+++..+||+... +...++..| ++.++.+. .+ .. ...+. .++.+
T Consensus 177 aaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~-~~--~~-----------~~~v~-~vlvq 241 (993)
T PLN02414 177 AAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKD-FD--YS-----------SGDVC-GVLVQ 241 (993)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchh-hc--cc-----------cCceE-EEEEe
Confidence 99999888876655 5 8899999999765 556667777 33333221 11 00 11222 33456
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-CCCCCCCcEEEEcccccc-----ccCCcce
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-DLKQHQPDFISISFYKMF-----GYPTGLG 283 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-dl~~~~~D~vv~S~~K~~-----g~p~G~G 283 (815)
..|.+|.+.|+++|+++|| ++|++++| +++.++...+ +..++++|+++++.|||. |||. +|
T Consensus 242 ~P~~~G~v~dv~~I~~~ah-----------~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~-aG 308 (993)
T PLN02414 242 YPATDGEVLDYAEFVKNAH-----------ANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPH-AA 308 (993)
T ss_pred cCCCCeEEcCHHHHHHHHH-----------HcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCC-ee
Confidence 6678999999999999999 89999999 8888877766 477899999999999998 4443 89
Q ss_pred EEEEecccccccCcccccCceEEEEecCCccc--ccccCccccccCCCCChhHHHHHHHHHHHH--Hh---hhhhH--HH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFH--IKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EK---KRKSF--TN 354 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~---~~~~~--~~ 354 (815)
+++++++..+.+...+.|+.. +. .....+. ....+...|++.+|.|+....++.+++... .. .|... ++
T Consensus 309 flavr~~~~r~~PgriVG~s~-d~-~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~r 386 (993)
T PLN02414 309 FLATSQEYKRLMPGRIIGVSV-DS-SGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 386 (993)
T ss_pred EEEECHHHHhhCCCcccCccc-CC-CCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999886655445666532 10 0001111 111333457889999998888888777533 22 33222 88
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
+..++.++.+.|.+. ++++..+. ...++.|.+.+ . .++.+.|.++||.++...
T Consensus 387 i~~la~~l~~~L~~~-------G~~~~~~~-------~f~~vt~~~~~--~-----~~v~~~L~~~gI~l~~~~------ 439 (993)
T PLN02414 387 VHGLAGVFAAGLKKL-------GFQVQSLP-------FFDTVKVKCSD--A-----DAIADAAAKVGINLRVVD------ 439 (993)
T ss_pred HHHHHHHHHHHHhhc-------CCccCCCC-------CcCeEEEecCC--H-----HHHHHHHHHCCCeeEEec------
Confidence 999999999999776 67776542 24577777642 1 358889999999876310
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+|+|++.++|++||++|+++|..
T Consensus 440 ---------------------------------~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 440 ---------------------------------ANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred ---------------------------------CCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 25799999999999999999999974
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=203.20 Aligned_cols=313 Identities=14% Similarity=0.134 Sum_probs=204.2
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhh---ccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecCC
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKE---NIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTSG 132 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~---~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~g 132 (815)
+.|+.+... .+++.+.+++.+.+.. .....|. .. ..++|+.+++++ ++++++ |++|+|
T Consensus 29 i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~~------~g----~~~lr~aia~~~~~~~~~~~~~~~--I~it~G 96 (368)
T PRK03317 29 VRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYPD------RD----AVALRADLAAYLTAQTGVGLTVEN--VWAANG 96 (368)
T ss_pred eEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCCC------Cc----hHHHHHHHHHHhhhhccCCCChhh--EEECCC
Confidence 445544444 3556667776655432 1111221 12 567888888888 566776 999999
Q ss_pred chhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 133 ATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
+++++.+++.++. ++|| +++..+.|+.+.. .+...| .+++ +.+..++++.+++++. .++++++++
T Consensus 97 ~~~~l~~~~~~~~-~~gd~v~v~~P~y~~~~~---~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~------~~~~~~i~l 166 (368)
T PRK03317 97 SNEILQQLLQAFG-GPGRTALGFVPSYSMHPI---IARGTHTEWVEGPRAADFTLDVDAAVAAIA------EHRPDVVFL 166 (368)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEeCCChHHHHH---HHHhcCCeeEEcccCCCCCCCHHHHHHHHh------ccCCCEEEE
Confidence 9999999999998 8999 7878866665543 333444 4444 3334566776665432 246889999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CC--CCC-CCCCCcEEEEccccccccCCc
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NM--LDL-KQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~--~dl-~~~~~D~vv~S~~K~~g~p~G 281 (815)
++++||||..++.+++.++++ ..++++|+|+++..-. .+ ..+ ...+..+++.||+|.|| .+|
T Consensus 167 ~~p~NPtG~~~~~~~l~~l~~-----------~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g-~~G 234 (368)
T PRK03317 167 TSPNNPTGTALPLDDVEAILD-----------AAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFA-FAG 234 (368)
T ss_pred eCCCCCCCCCCCHHHHHHHHH-----------HCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhc-cch
Confidence 999999999999999999998 5689999999976321 01 111 11122367779999998 447
Q ss_pred --ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy16512 282 --LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELS 359 (815)
Q Consensus 282 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~ 359 (815)
+||++.++++++.+.... ...+.+..+..++.++++.........++..+.+
T Consensus 235 lRiG~~~~~~~~~~~l~~~~--------------------------~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 288 (368)
T PRK03317 235 GRLGYLAAAPAVVDALRLVR--------------------------LPYHLSAVTQAAARAALRHADELLASVAALRAER 288 (368)
T ss_pred hhhhhhhCCHHHHHHHHhcC--------------------------CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 799999888776553211 0123445556565566654333222225566777
Q ss_pred HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhc
Q psy16512 360 QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFL 439 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~ 439 (815)
+.+.+.|++. ++.+..+. ++++.+.-. .+ ..++.+.|.++||.++...
T Consensus 289 ~~l~~~L~~~-------g~~~~~~~--------~~~~~~~~~-~~-----~~~~~~~l~~~Gv~v~~~~----------- 336 (368)
T PRK03317 289 DRVVAWLREL-------GLRVAPSD--------ANFVLFGRF-AD-----RHAVWQGLLDRGVLIRDVG----------- 336 (368)
T ss_pred HHHHHHHHHC-------CCEeCCCC--------CcEEEEecc-CC-----HHHHHHHHHHCCEEEEeCC-----------
Confidence 7788888775 56655443 455444211 11 2357788888999987421
Q ss_pred CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 440 g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. .+++|++++ +.+++++++++|++++.+
T Consensus 337 --------------------------~-~~~iRi~~~---~~~~~~~~~~~l~~~~~~ 364 (368)
T PRK03317 337 --------------------------I-PGWLRVTIG---TPEENDAFLAALAEVLAT 364 (368)
T ss_pred --------------------------C-CCeEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 0 378999987 789999999999997643
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-20 Score=206.52 Aligned_cols=311 Identities=14% Similarity=0.094 Sum_probs=203.3
Q ss_pred hhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+.|+.+.... +++.+.+++.+.+.. ...+|. .. ..++|+.+++++++++++ |++|+|+++++..+
T Consensus 24 ~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~------~g----~~~lr~~ia~~~~~~~~~--I~~~~G~~~~l~~~ 90 (352)
T PRK03321 24 AIKLSSNETPFGPLPSVRAAIARAAAG-VNRYPD------MG----AVELRAALAEHLGVPPEH--VAVGCGSVALCQQL 90 (352)
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHh-cCcCCC------Cc----HHHHHHHHHHHhCcCHHH--EEECCCHHHHHHHH
Confidence 35556554443 556777777655432 111221 12 788999999999998877 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
+.++. ++|| |+++...++.+ ...++..| .++.++++..+++.+++++ .+++++|++++++||||
T Consensus 91 ~~~~~-~~gd~Vli~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~-------~~~~~~v~l~~p~NPtG 159 (352)
T PRK03321 91 VQATA-GPGDEVIFAWRSFEAY---PILVQVAGATPVQVPLTPDHTHDLDAMAAAI-------TDRTRLIFVCNPNNPTG 159 (352)
T ss_pred HHHhc-CCCCEEEeCCCCHHHH---HHHHHHcCCEEEEccCCCCCCCCHHHHHHhh-------ccCCCEEEEeCCCCCcC
Confidence 98887 8999 77766555433 22333444 4444444555666665533 46789999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCC---CCCCCcEEEEccccccccCCc--ceEEE
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDL---KQHQPDFISISFYKMFGYPTG--LGALI 286 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl---~~~~~D~vv~S~~K~~g~p~G--~G~l~ 286 (815)
.++|.++|.++++.. ++++++++|+++.... .+..+ ...+.-+++.|++|.|| .+| +||++
T Consensus 160 ~~~~~~~l~~l~~~~---------~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRiG~~v 229 (352)
T PRK03321 160 TVVTPAELARFLDAV---------PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYG-LAGLRVGYAV 229 (352)
T ss_pred CCcCHHHHHHHHHhC---------CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhh-hHHHhhhhhc
Confidence 999999999999821 4699999999865211 11111 11123467779999999 557 89999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYF 366 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L 366 (815)
+++++++.+.... ...+.+.++..++.+++..........++..+.++.+.+.|
T Consensus 230 ~~~~~~~~~~~~~--------------------------~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L 283 (352)
T PRK03321 230 GHPEVIAALRKVA--------------------------VPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAAL 283 (352)
T ss_pred CCHHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887776553221 12345556655555555432222122244445556677777
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
.+. ++.+..+ .++++++.+.. . ..++.+.|.++||.+++ |.
T Consensus 284 ~~~-------~~~~~~~--------~g~~i~i~l~~-~-----~~~~~~~l~~~gI~v~~---~~--------------- 324 (352)
T PRK03321 284 RAA-------GWTVPPS--------QANFVWLPLGE-R-----TADFAAAAAEAGVVVRP---FA--------------- 324 (352)
T ss_pred HHC-------CCccCCC--------CCCEEEEeCCC-C-----HHHHHHHHHHCCEEEEc---cC---------------
Confidence 764 3443321 26677776632 1 23577888899999864 11
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...|||+++ +.+++++++++|++++
T Consensus 325 ---------------------~~~iRi~~~---~~~~~~~~~~al~~~~ 349 (352)
T PRK03321 325 ---------------------GEGVRVTIG---APEENDAFLRAARAWR 349 (352)
T ss_pred ---------------------CCcEEEeeC---CHHHHHHHHHHHHHHh
Confidence 135999987 8999999999999864
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=207.29 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=187.7
Q ss_pred HHHHHHHHHhHcC------------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-
Q psy16512 107 IDQMRTKILQYFN------------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ- 172 (815)
Q Consensus 107 ~~~~r~~la~~~g------------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g- 172 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+.......+...
T Consensus 77 ~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~--i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~ 153 (412)
T PTZ00433 77 SPEAREAVATYWRNSFVHKESLKSTIKKDN--VVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMR 153 (412)
T ss_pred cHHHHHHHHHHHHhhccccccccCCCChhh--EEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEE
Confidence 6678888888875 45665 9999999999999999998 8999 8888888777654444333222
Q ss_pred eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 173 IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 173 ~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
.++++.+ ..++++.+++++ .+++++|++++++||||..++.+++.++++ .|+++|+++|+|++
T Consensus 154 ~i~~~~~~~~~~d~~~l~~~~-------~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~--------~a~~~~~~ii~De~ 218 (412)
T PTZ00433 154 FYNCRPEKDWEADLDEIRRLV-------DDRTKALIMTNPSNPCGSNFSRKHVEDIIR--------LCEELRLPLISDEI 218 (412)
T ss_pred EEecCccccCcCCHHHHHHHh-------ccCceEEEEeCCCCCCCcccCHHHHHHHHH--------HHHHcCCeEEEecc
Confidence 5565533 245666665433 357899999999999999999776655543 23389999999998
Q ss_pred cccCC----CCCCCCCC---CCcEEEEccccccccCCc--ceEEEEe-c-----ccccccCcccccCceEEEEecCCccc
Q psy16512 251 TYCGS----NMLDLKQH---QPDFISISFYKMFGYPTG--LGALIVK-Q-----KSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 251 ~~~g~----~~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~-~-----~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
+..-. ....+..+ ..-+++.||+|.|| .+| +||+++. + ++++.+....
T Consensus 219 y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~-~pGlRlG~~i~~~p~~~~~~~~~~~~~~~---------------- 281 (412)
T PTZ00433 219 YAGMVFNGATFTSVADFDTTVPRVILGGTAKNLV-VPGWRLGWLLLVDPHGNGGDFLDGMKRLG---------------- 281 (412)
T ss_pred ccccccCCCCccchhhccCCCceEEEccchhhcC-CCCeeEEEEEEeCCcccHHHHHHHHHHHh----------------
Confidence 65211 11111111 22477889999998 447 8999972 2 2332221100
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHH-HHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCccc
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDT-MEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQG 393 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~-l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~ 393 (815)
......+.....++..++.. ....-.. .+++++.++.+.+.|++. .++.+..|.+ +
T Consensus 282 ---------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~p~g-------g 339 (412)
T PTZ00433 282 ---------MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGEC------IGLSPTMPRG-------S 339 (412)
T ss_pred ---------hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccCCCe-------e
Confidence 00113344445444444432 1111111 256677777788888765 3555554443 6
Q ss_pred ceEEEEEecCC-CCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEE
Q psy16512 394 NIVNFNLLHKD-GTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSI 471 (815)
Q Consensus 394 ~i~~f~~~~~~-~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i 471 (815)
.++++.++... ....+..++.+.| .++||.+++|..|.. .+++
T Consensus 340 ~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------------------------~~~i 384 (412)
T PTZ00433 340 MFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-----------------------------------PGFT 384 (412)
T ss_pred EEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-----------------------------------CCeE
Confidence 67777775310 0000122455555 578999998865421 2789
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 472 RISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 472 Rvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|++++. .++++++.++.|.+++..
T Consensus 385 Ris~~~--~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 385 RLTISR--PVEVLREAVERIKAFCER 408 (412)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHHH
Confidence 999984 578899999999887653
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-20 Score=205.16 Aligned_cols=299 Identities=14% Similarity=0.102 Sum_probs=190.0
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ ++++++ |++|+|+++++.+++.++. ++|| |+++.++|+.+.......+... .++.+.
T Consensus 74 ~~~lr~~ia~~~~~~~~~~~~~~~--i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~ 150 (404)
T PRK09265 74 LFSARKAIMQYYQQKGIPDVDVDD--IYIGNGVSELIVMAMQALL-NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDE 150 (404)
T ss_pred cHHHHHHHHHHHhccCCCCCCccc--EEEeCChHHHHHHHHHHhC-CCCCEEEEeCCCCcChHHHHHHcCCEEEEEeccc
Confidence 567888999987 677877 9999999999999999987 8999 9999988887655544432222 344443
Q ss_pred h--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 179 D--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 179 ~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+ ...+.+.++++ ..+++++|++++++||||.++| +++|.++|+ ++|+++|+|+++.-
T Consensus 151 ~~~~~~d~~~l~~~-------~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~-----------~~~~~ii~De~y~~ 212 (404)
T PRK09265 151 EAGWFPDLDDIRSK-------ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIAR-----------QHNLIIFADEIYDK 212 (404)
T ss_pred ccCCCCCHHHHHHh-------ccccceEEEEECCCCCCCcCCCHHHHHHHHHHHH-----------HCCCEEEEehhhhh
Confidence 2 23455555543 3467899999999999999999 555666666 89999999988642
Q ss_pred ----CCCCCCCCCCC---CcEEEEccccccccCCc--ceEEEEe--cccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 254 ----GSNMLDLKQHQ---PDFISISFYKMFGYPTG--LGALIVK--QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 254 ----g~~~~dl~~~~---~D~vv~S~~K~~g~p~G--~G~l~~~--~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
+.....+.... .-+++.|++|.|| .+| +||+++. +...+.+.......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~pGlRiG~~v~~~~~~~~~~~~~~~~~~-------------------- 271 (404)
T PRK09265 213 ILYDGAVHISIASLAPDLLCVTFNGLSKAYR-VAGFRVGWMVLSGPKKHAKGYIEGLDML-------------------- 271 (404)
T ss_pred ccCCCCCcCCHHHcCCCceEEEEecchhhcc-CcccceEEEEEeCchHHHHHHHHHHHHH--------------------
Confidence 11111221111 2256689999998 447 7999974 22211110000000
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKR---KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~---~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.....+++.++..++..++....... ...++..+.++.+.+.|+++ +++++..+.+ +.++++.
T Consensus 272 -~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~------~~~~~~~p~~-------g~~l~~~ 337 (404)
T PRK09265 272 -ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNAI------PGVSCVKPKG-------ALYAFPK 337 (404)
T ss_pred -hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccCCCc-------ceEEEEE
Confidence 00012344555556555553211111 11135566677788888776 5666665543 5677777
Q ss_pred EecCC-CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 400 LLHKD-GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 400 ~~~~~-~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
++... +..-+...+.+.+.++||.+.+|..|... ..+++|++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~---------------------------------~~~~~Ri~~~-- 382 (404)
T PRK09265 338 LDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWP---------------------------------EPDHFRIVTL-- 382 (404)
T ss_pred ecccccCCCCHHHHHHHHHHhCCEEEECchhhCCC---------------------------------CCCeEEEEeC--
Confidence 76421 00011234677889999999988654210 1378999996
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy16512 479 SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~ 496 (815)
.+.++++..++.|.+++.
T Consensus 383 ~~~e~l~~~l~rl~~~l~ 400 (404)
T PRK09265 383 PRVDDLEEAIGRIGRFLS 400 (404)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 578999999999988764
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=207.26 Aligned_cols=318 Identities=13% Similarity=0.070 Sum_probs=199.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
...+++.|+++.|.+ + +++++|+++|+.+++.++. ++|| ||+..+.|+.+... ...+...| .+.+.. ..
T Consensus 85 ~~~Le~~lA~leg~~--~--~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~--~~ 157 (427)
T PRK07049 85 SEIVEDRLAVYEGAE--S--AALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD--GL 157 (427)
T ss_pred HHHHHHHHHHHhCCC--c--EEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC--CC
Confidence 788999999999965 2 6777888889999999998 8999 88888788776554 33345556 333321 12
Q ss_pred cchhhhhhhhhhhhhc-CCCccEEEEecccCCCccccChHHHHHHhhccccccccccC-CCCeEEEEecccccCCCCCCC
Q psy16512 183 NMLNEFKESQENVENM-RHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-RSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~-~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-~~gi~vivD~a~~~g~~~~dl 260 (815)
+.+.+++++. +.+ .+++++|++++|+||||.++|+++|.++++... ++ .+++++++|++.+.+.....+
T Consensus 158 d~~~l~~~l~---~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~------~~~~~~~~vvvDety~~~~~~~pl 228 (427)
T PRK07049 158 SEAAIGAAAE---AAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIE------ARQGHRPIIACDNTLLGPVFQKPL 228 (427)
T ss_pred CHHHHHHHHH---hhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhh------hcccCCCEEEEECCccccccCCcc
Confidence 3333433221 111 256999999999999999999999999998210 00 178999999996544322222
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..++|+++.|++|++++++| +|+++.++++++.+.... ....++++....+++
T Consensus 229 -~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~------------------------~~~g~~ls~~~a~l~ 283 (427)
T PRK07049 229 -EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALR------------------------SAIGTQLDPHSCWML 283 (427)
T ss_pred -ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHH
Confidence 45789999999999997667 699888777665553211 111234555555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCC--CC---------CCCcccceEEEEEecCCCC
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTD--YG---------ESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~--~~---------~~~~~~~i~~f~~~~~~~~ 406 (815)
..+++.+ ...+++..+.+..+.+.|++. |.++ ++-|.. .+ .....+++++|.+.+.. +
T Consensus 284 ~r~L~tl---~~R~~~~~~~a~~la~~L~~~------p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~-~ 353 (427)
T PRK07049 284 GRSLETL---VLRMERANRNARAVAEFLRDH------PKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQ-A 353 (427)
T ss_pred HcCCChH---HHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCH-H
Confidence 5555543 223466688888888888877 4443 222211 00 01245889999996421 1
Q ss_pred ccCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+.+.|+-..+.++.|... .++....+..++++..... |..++.||+|+|....++-
T Consensus 354 ~--~~~f~~~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl 416 (427)
T PRK07049 354 A--AFRFLNALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERI---------------GVLESTIRLSIGIEHPDDL 416 (427)
T ss_pred H--HHHHHHcCcccEEcccCCCCCceeeCCCccccccCCHHHHHhc---------------CCCcCeEEEEeCcCCHHHH
Confidence 1 123556666666666666422 2232223344444433222 5667899999998654444
Q ss_pred HHHHHHHHH
Q psy16512 484 VKYFLSFLN 492 (815)
Q Consensus 484 i~~lv~~L~ 492 (815)
++.|.++|+
T Consensus 417 ~~dl~~al~ 425 (427)
T PRK07049 417 IADLAQALD 425 (427)
T ss_pred HHHHHHHHh
Confidence 445544443
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=201.08 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=189.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhh--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR-- 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~-- 182 (815)
..++|+.|++++++++++ |++|+|+++++.+++.++. +|+ +++..+.|+.+....+..+... .++.+.++..
T Consensus 59 ~~~Lr~aia~~~~v~~~~--I~it~G~~~~i~~~~~~l~--~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 134 (360)
T PRK07392 59 YRELRLALAQHHQLPPEW--ILPGNGAAELLTWAGRELA--QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPG 134 (360)
T ss_pred HHHHHHHHHHHhCcChhh--EEECCCHHHHHHHHHHHhC--CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcc
Confidence 558999999999999987 9999999999999999874 466 8888877766654444433222 5555544332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLD 259 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~d 259 (815)
+...++.. ... .+++++++++++|||||.+++.++|.++++ ++++ +|+|+++.--. ....
T Consensus 135 ~~~~~~~~----~~~-~~~~~~~~l~nP~NPTG~~~~~~~l~~l~~-----------~~~~-~IiDE~y~~~~~~~~~~s 197 (360)
T PRK07392 135 LTLRLQTL----PPQ-LTPNDGLLLNNPHNPTGKLWSREAILPLLE-----------QFAL-VVVDEAFMDFLPPDAEQS 197 (360)
T ss_pred cccCHHHH----HHh-ccCCCEEEEeCCCCCCCCCcCHHHHHHHHH-----------HCCE-EEEECchhhhccCccccc
Confidence 12222221 111 246899999999999999999999999998 7785 66798864211 0111
Q ss_pred ----CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 260 ----LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 260 ----l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
+.....-+++.||+|.|| .+| +||++++++.++.+.... ..++.+..
T Consensus 198 ~~~~~~~~~~vi~i~S~SK~~~-l~GlRiG~~v~~~~~~~~~~~~~--------------------------~~~~~s~~ 250 (360)
T PRK07392 198 LIPCLAEYPNLIILRSLTKFYS-LPGLRLGYAIAHPDRLQRWQQWR--------------------------DPWPVNGL 250 (360)
T ss_pred hHHHhhcCCCEEEEEechhhhc-CCchheeeeeCCHHHHHHHHhhC--------------------------CCCCCCHH
Confidence 111223477889999999 557 899999887765542111 12345666
Q ss_pred HHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 334 AIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
+..++.++++.. ..... .++.++.++++.+.|+++ +++.+.. .+ ++++.+.++. + ..+
T Consensus 251 ~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~~------~~~~~~~-~~-------~~fl~~~~~~-~-----~~~ 309 (360)
T PRK07392 251 AAAAAIAALADR-DFQQQTWAWLPPAREALFQGLASL------PGLTPLP-SA-------ANFLLVQSQG-S-----ALQ 309 (360)
T ss_pred HHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHhC------CCcEECC-CC-------CCEEEEEcCC-C-----HHH
Confidence 666666665431 11111 155677788888888877 6776653 22 5666666542 1 123
Q ss_pred HHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 413 VQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 413 v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
+.+. +.++||.+++|..+.. ...+++||+++ +.++.++|.++|
T Consensus 310 l~~~ll~~~gv~v~pg~~f~~---------------------------------~~~~~iRi~~~---~~~~~~~l~~al 353 (360)
T PRK07392 310 LQEKLLQQHRILIRDCLSFPE---------------------------------LGDRYFRVAVR---TEAENQRLLEAL 353 (360)
T ss_pred HHHHHHhhCCEEEEeCCCCCC---------------------------------CCCCEEEEEeC---CHHHHHHHHHHH
Confidence 5544 5788999998865421 01379999998 567788999999
Q ss_pred HHHHhh
Q psy16512 492 NQYFLQ 497 (815)
Q Consensus 492 ~~~~~~ 497 (815)
++++.+
T Consensus 354 ~~~~~~ 359 (360)
T PRK07392 354 AAILAN 359 (360)
T ss_pred HHHhhc
Confidence 887643
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=203.29 Aligned_cols=299 Identities=12% Similarity=0.126 Sum_probs=189.6
Q ss_pred HHHHHHHHHhHcC----C--C-CCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYFN----T--D-SDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~g----~--~-~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.++++++ . + +++ |++|+|+++|+.+++.++. .+|| |++..+.|+.+....+..+... .++.+
T Consensus 69 ~~~lr~~ia~~~~~~~~~~~~~~~~--i~it~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 145 (391)
T PRK07309 69 LLELRQAAADFVKEKYNLDYAPENE--ILVTIGATEALSASLTAIL-EPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT 145 (391)
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCc--EEEeCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEEecC
Confidence 5667777777663 3 2 244 9999999999999999987 8999 8888877776654444332222 44544
Q ss_pred chh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 178 VDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
.++ .++.+.++++++ ...++++++++++|+||||..++.+++.++++ .|+++++++|+|+++..-.
T Consensus 146 ~~~~~~d~~~l~~~~~----~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~--------~~~~~~~~ii~D~~y~~~~~ 213 (391)
T PRK07309 146 ENDFVLTPEMLEKAIL----EQGDKLKAVILNYPANPTGVTYSREQIKALAD--------VLKKYDIFVISDEVYSELTY 213 (391)
T ss_pred CcCCcCCHHHHHHHhh----ccCCCeEEEEEECCCCCCCcCcCHHHHHHHHH--------HHHHcCcEEEEEccccceee
Confidence 322 456666665442 11236899999999999999999666555544 3338999999999875321
Q ss_pred ---CCCCCCCC--CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 256 ---NMLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 256 ---~~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
...++... ...+++.|++|.|| .+| +||++.++++++.+.... .+...
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRvG~~v~~~~~~~~~~~~~------------------------~~~~~ 268 (391)
T PRK07309 214 TGEPHVSIAEYLPDQTILINGLSKSHA-MTGWRIGLIFAPAEFTAQLIKSH------------------------QYLVT 268 (391)
T ss_pred CCCCCCCHHHhccCCEEEEecChhhcc-CccceeEEEEeCHHHHHHHHHHH------------------------hhccc
Confidence 11222211 23478889999999 447 899999988876553211 01112
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
+++.....++..+++......... ++..+.++++.+.|++. ++.+..+.+ +.++++.++....
T Consensus 269 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~p~g-------g~~~~~~l~~~~~-- 332 (391)
T PRK07309 269 AATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL-------GFKIIKPDG-------AFYIFAKIPAGYN-- 332 (391)
T ss_pred CCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCe-------eEEEEEECCCCCC--
Confidence 344455555555554211111112 56667777888888775 566665442 4455556653211
Q ss_pred cCHHHHHH-hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 408 YGYSEVQN-LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 408 ~~~~~v~~-~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+ ++.++||.+.+|..+... ..+++|++++. +.++++.
T Consensus 333 ~~~~~~~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~l~~ 377 (391)
T PRK07309 333 QDSFKFLQDFARKKAVAFIPGAAFGPY---------------------------------GEGYVRLSYAA--SMETIKE 377 (391)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEecC--CHHHHHH
Confidence 12224554 467899999988643211 13799999984 5789999
Q ss_pred HHHHHHHHHh
Q psy16512 487 FLSFLNQYFL 496 (815)
Q Consensus 487 lv~~L~~~~~ 496 (815)
.++.|.+++.
T Consensus 378 ~i~~l~~~~~ 387 (391)
T PRK07309 378 AMKRLKEYME 387 (391)
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-20 Score=201.53 Aligned_cols=289 Identities=14% Similarity=0.126 Sum_probs=202.9
Q ss_pred HHHHHHHHHhHcCCC------CCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYFNTD------SDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~------~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
+.++++.++++++.. +++ +++++|+++++..++.++. .+|+ ++++...|+++....+..+... .++.+.
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~~--~~~~~~~t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~ 114 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPEE--IVVTNGAQEALSLLLRALL-NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDE 114 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcce--EEEecCcHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCEEEEEeccc
Confidence 677788888887754 444 9999999999999999997 8888 8888988988766655543222 566655
Q ss_pred hhhhcc--hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH---HHhhccccccccccCCCCeEEEEeccccc
Q psy16512 179 DDARNM--LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN---TVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 179 ~~~~~~--~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~---~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++..+. +.++. ..++++++|++++++||||..+|++++. ++|+ ++|+++++|++++.
T Consensus 115 ~~~~~~~~~~~~~-------~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~-----------~~~~~~ivD~a~~~ 176 (350)
T cd00609 115 EGGFLLDLELLEA-------AKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAK-----------KHGILIISDEAYAE 176 (350)
T ss_pred ccCCccCHHHHHh-------hcCccceEEEEECCCCCCCcccCHHHHHHHHHHHH-----------hCCeEEEEecchhh
Confidence 544433 22222 3357799999999999999999988876 5666 89999999999876
Q ss_pred CCC----C---CCCCCCCCcEEEEcccccccc-CCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 254 GSN----M---LDLKQHQPDFISISFYKMFGY-PTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 254 g~~----~---~dl~~~~~D~vv~S~~K~~g~-p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
+.. + ......+.|+++.|++|+++. +.++|++++++ ++.+.++... +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~------------------------~ 232 (350)
T cd00609 177 LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLL------------------------P 232 (350)
T ss_pred ceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHH------------------------H
Confidence 431 1 223445678999999999982 23489999988 5655543211 2
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
+..++++.....++..+++........+ ++..++++++.+.|.++ +...+.. ...+.++++.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~-------~~~g~~~~~~~~~~ 299 (350)
T cd00609 233 YTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKEL------GPLVVVK-------PSGGFFLWLDLPEG 299 (350)
T ss_pred hcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhc------CCccccC-------CCccEEEEEecCCC
Confidence 2234677777777777777653222222 78888999999999887 3332221 22366777776543
Q ss_pred CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
.....+.++|.++||.++.+..+.+ ....++|++++.+ .+|
T Consensus 300 ----~~~~~~~~~l~~~gi~i~~~~~~~~---------------------------------~~~~~iRi~~~~~--~~~ 340 (350)
T cd00609 300 ----DDEEFLERLLLEAGVVVRPGSAFGE---------------------------------GGEGFVRLSFATP--EEE 340 (350)
T ss_pred ----ChHHHHHHHHHhCCEEEeccccccc---------------------------------CCCCeEEEEeeCC--HHH
Confidence 1233578888999999987654332 1137899999977 999
Q ss_pred HHHHHHHHH
Q psy16512 484 VKYFLSFLN 492 (815)
Q Consensus 484 i~~lv~~L~ 492 (815)
+++++++|+
T Consensus 341 i~~~~~al~ 349 (350)
T cd00609 341 LEEALERLA 349 (350)
T ss_pred HHHHHHHhh
Confidence 999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=206.28 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=184.9
Q ss_pred HHHHHHHHHhHc-----CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEc
Q psy16512 107 IDQMRTKILQYF-----NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~-----g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~ 176 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |+++.+.|+.+..+. +..| .++.
T Consensus 68 ~~~lr~~ia~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~---~~~g~~~~~v~~ 141 (397)
T PRK07568 68 IPELREAFAKYYKKWGIDVEPDE--ILITNGGSEAILFAMMAIC-DPGDEILVPEPFYANYNGFA---TSAGVKIVPVTT 141 (397)
T ss_pred CHHHHHHHHHHHHHhCCCCCcce--EEEcCChHHHHHHHHHHhc-CCCCEEEEecCCCccHHHHH---HHcCCEEEEeec
Confidence 678888999887 466766 9999999999999999986 8999 888777666554433 3344 4444
Q ss_pred Cchhhh---cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecc
Q psy16512 177 SVDDAR---NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 177 ~~~~~~---~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
+.+..+ +.+.+++ .+.+++++|++++++||||.+++.++ |.++|+ ++++++++|++
T Consensus 142 ~~~~g~~~~~~~~l~~-------~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~-----------~~~~~ii~De~ 203 (397)
T PRK07568 142 KIEEGFHLPSKEEIEK-------LITPKTKAILISNPGNPTGVVYTKEELEMLAEIAK-----------KHDLFLISDEV 203 (397)
T ss_pred CcccCCCCCCHHHHHH-------hcCccceEEEEECCCCCCCccCCHHHHHHHHHHHH-----------HCCcEEEEecc
Confidence 422222 2244433 33467899999999999999998655 555555 89999999988
Q ss_pred ccc----CCCCC---CCCC-CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCccccccc
Q psy16512 251 TYC----GSNML---DLKQ-HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 251 ~~~----g~~~~---dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
+.. +.... ++.. .+.-+++.|++|.|| ++| +||++.+ +++++.+....
T Consensus 204 y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~~~~~~~~~~~~~~~~~-------------------- 262 (397)
T PRK07568 204 YREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYS-ACGARIGCLISKNKELIAAAMKLC-------------------- 262 (397)
T ss_pred chhcccCCCCccChhhcCCCcCCEEEEecchhhcc-CCCcceEEEecCCHHHHHHHHHHh--------------------
Confidence 642 11111 2211 123477889999999 446 8999885 45544331110
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
....+.+.....++..+++.....-... +..++.++.+.+.|+++ +++.+..|.+ +.++++
T Consensus 263 -----~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~g-------~~~~~~ 324 (397)
T PRK07568 263 -----QARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNKI------PGVVCEKPKG-------AFYIIA 324 (397)
T ss_pred -----hccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCc-------ceEEEE
Confidence 0011334455555555554221111122 56677788888888776 5666654442 445666
Q ss_pred EEecCCCCccCHHHHHHhhhc------CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 399 NLLHKDGTYYGYSEVQNLANL------KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~------~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
+++..+ ..++.+.+.+ +||.+.+|..+... ++...+++|
T Consensus 325 ~l~~~~-----~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~------------------------------~~~~~~~iR 369 (397)
T PRK07568 325 KLPVDD-----AEDFAKWLLTDFNYNGETVMVAPASGFYAT------------------------------PGLGKNEIR 369 (397)
T ss_pred ecCCCC-----HHHHHHHHHhhcccccceEEEeCchHhcCC------------------------------CCCCCCeEE
Confidence 765422 2235555532 69999988643210 011137999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+|++. +.++++.+++.|.+.+.+
T Consensus 370 ls~~~--~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 370 IAYVL--NEEDLKRAMEILKEALEK 392 (397)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHHH
Confidence 99973 579999999999987754
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-20 Score=208.02 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=190.4
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+.......+... .+++.+
T Consensus 110 ~~~lR~aiA~~~~~~~~~~~~~~~--I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~ 186 (462)
T PLN02187 110 ILPARRAVADYMNRDLPHKLTPED--IFLTAGCNQGIEIVFESLA-RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186 (462)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccc--EEEeCCHHHHHHHHHHHhc-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCcc
Confidence 6778899999873 57776 9999999999999999998 9999 9999988877654443332222 444432
Q ss_pred --hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 179 --DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 179 --~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
+..++++.++++ ++++++++++++|+||||.+++.+++.++++ .|+++|+++|+|+++.-
T Consensus 187 ~~~~~~d~~~l~~~-------~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~--------~a~~~~i~iI~DE~Y~~l~f 251 (462)
T PLN02187 187 EKEWEIDLEGIEAI-------ADENTVAMVVINPNNPCGNVYSHDHLKKVAE--------TARKLGIMVISDEVYDRTIF 251 (462)
T ss_pred ccCCccCHHHHHHh-------cCCCcEEEEEeCCCCCCCCccCHHHHHHHHH--------HHHHCCCEEEEecccccccc
Confidence 335566666543 3467899999999999999999666555544 23389999999998653
Q ss_pred -CCCCCCCCCC---CCcEEEEccccccccCCc--ceEEEEec-c-cc---cccCcccccCceEEEEecCCcccccccCcc
Q psy16512 254 -GSNMLDLKQH---QPDFISISFYKMFGYPTG--LGALIVKQ-K-SA---HVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 254 -g~~~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~~-~-~~---~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
+....++..+ ..-+++.||+|.|+ .+| +||+++.+ + .+ +.+....
T Consensus 252 ~~~~~~s~~~~~~~~~vi~l~SfSK~f~-~pGlRiG~~v~~~p~~~~~~~~~~~~~~----------------------- 307 (462)
T PLN02187 252 GDNPFVSMGKFASIVPVLTLAGISKGWV-VPGWKIGWIALNDPEGVFETTKVLQSIK----------------------- 307 (462)
T ss_pred CCCCceeHHHhccCCcEEEEecchhhcC-CccceeEEEEecCchhHHHHHHHHHHHH-----------------------
Confidence 1111122221 13477789999999 557 89999843 2 11 1221110
Q ss_pred ccccC-CCCChhHHHHHHHHHHH-HHhhhh-hHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEE
Q psy16512 323 EKFED-GTVNYLAIISLKYGFDT-MEKKRK-SFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNF 398 (815)
Q Consensus 323 ~~~~~-gt~~~~~~~al~~al~~-l~~~~~-~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f 398 (815)
..+.. ..++.....++.++++. ....-. ..+.+++.++++.+.|+++ +.+..+ .|. .+.++++
T Consensus 308 ~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~------~~~~~~~~P~-------gg~fl~~ 374 (462)
T PLN02187 308 QNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDI------PCVVCPKKPE-------SCTYLLT 374 (462)
T ss_pred HhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC------CCCcCCCCCC-------EeEEEEe
Confidence 00111 12355566666666542 111111 1266777788888888876 433222 232 2566666
Q ss_pred EEecCCCCcc-CH-HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 399 NLLHKDGTYY-GY-SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 399 ~~~~~~~~~~-~~-~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
++.......+ +. ..+.+++.++||.+.+|..+.. .+++||+++
T Consensus 375 ~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~-----------------------------------~~~iRis~~ 419 (462)
T PLN02187 375 KLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGL-----------------------------------KNWMRITIG 419 (462)
T ss_pred ecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCC-----------------------------------CCeEEEEeC
Confidence 6642110001 11 2345667899999998865420 379999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 477 HASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
. .++.++..++.|.+++..-.
T Consensus 420 ~--~~e~l~~al~rL~~~l~~~~ 440 (462)
T PLN02187 420 V--EAHMLEDALERLKGFCTRHA 440 (462)
T ss_pred C--CHHHHHHHHHHHHHHHHHhh
Confidence 4 57888888888888765433
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-20 Score=203.52 Aligned_cols=309 Identities=12% Similarity=0.042 Sum_probs=193.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchh-hHHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVL-GMRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~-~~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++.+++++|.+. .+++++++.|+..++.++. ++|| +|++...|+..+ .+...+...| ...++. .
T Consensus 72 ~~~le~~lA~l~g~~~----al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~---~ 143 (403)
T PRK07810 72 VSMFEERLRLIEGAEA----CFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG---E 143 (403)
T ss_pred HHHHHHHHHHHhCCCc----EEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC---C
Confidence 7899999999999763 6777888889999998887 8999 777776775543 4555566666 344442 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.++++ ++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 144 d~~~l~~a-------i~~~tklV~~esp~Nptg~v~dl~~I~~la~-----------~~g~~vivD~a~a~~~~~~~~-~ 204 (403)
T PRK07810 144 DLSQWEEA-------LSVPTQAVFFETPSNPMQSLVDIAAVSELAH-----------AAGAKVVLDNVFATPLLQRGL-P 204 (403)
T ss_pred CHHHHHHh-------cCcCceEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCCccccCChh-h
Confidence 44445443 3468999999999999999999999999999 899999999999877653333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|+++++.. .|+++.+++.+. .++... +.....++....+.+.
T Consensus 205 ~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~------------------------~~~g~~~s~~~a~l~l 260 (403)
T PRK07810 205 LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLM------------------------RHTGPALSAFNAWVLL 260 (403)
T ss_pred cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHH------------------------HHhCCCCCHHHHHHHH
Confidence 5899999999999994432 477777766543 222111 1111233434444433
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCC-Ccc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDG-TYY 408 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~-~~~ 408 (815)
.+++ .+...+++..+.+.++.+.|++. |.+. ++-|...+. ....+++++|.+.+... ..-
T Consensus 261 ~~L~---tl~~R~~~~~~~a~~~a~~L~~~------p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~ 331 (403)
T PRK07810 261 KGLE---TLALRVRHSNASALRIAEFLEGH------PAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKK 331 (403)
T ss_pred hccC---cHHHHHHHHHHHHHHHHHHHhcC------CCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHH
Confidence 4444 44445577788888888888876 4443 332321010 12458899999974211 000
Q ss_pred CHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
....+.+.|.-..+.++.|...+ ++....+..++.+...+ .|..++.+|+|+|..+.++-++
T Consensus 332 ~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~---------------~gi~~~lvR~svGlE~~~dli~ 396 (403)
T PRK07810 332 RAFEVLDKLRVIDISNNLGDAKSLITHPATTTHRAMGPEGRAA---------------IGLGDGVVRLSVGLEDTDDLIA 396 (403)
T ss_pred HHHHHHHhCCceEEeccCCCCcceeeCCCccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHH
Confidence 01234555555555555553222 22222233444433221 2555689999999754444444
Q ss_pred HHHHH
Q psy16512 486 YFLSF 490 (815)
Q Consensus 486 ~lv~~ 490 (815)
.|-++
T Consensus 397 dl~~A 401 (403)
T PRK07810 397 DLDRA 401 (403)
T ss_pred HHHHh
Confidence 44433
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-20 Score=205.72 Aligned_cols=298 Identities=12% Similarity=0.068 Sum_probs=188.2
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | +++++ +|++|+|+++++..++.++. ++|| |++..+.|+.+....+..+... .++++
T Consensus 83 ~~~lr~aia~~~~~~~g~~~~~~~~-~I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~ 160 (410)
T PRK06290 83 IQEFKEAAARYMEKVFGVKDIDPVT-EVIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLL 160 (410)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCcc-eEEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEecC
Confidence 667888888875 4 44541 39999999999999999998 8999 8888888776655444433322 55665
Q ss_pred chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 178 VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 178 ~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
.++ ..+++.++++ +.+++++|++++|+||||.+++.+++.++++ .|++++++||+|+++....
T Consensus 161 ~~~~~~~d~~~l~~~-------~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~--------la~~~~~~iI~DEaY~~~~ 225 (410)
T PRK06290 161 EENNFLPDLDSIPKD-------IKEKAKLLYLNYPNNPTGAVATKEFYEEVVD--------FAKENNIIVVQDAAYAALT 225 (410)
T ss_pred CCcCCcCCHHHHHHh-------hcccceEEEEECCCCCCCcCCCHHHHHHHHH--------HHHHcCeEEEEecchhhce
Confidence 433 2355555442 2357899999999999999999776655544 2338999999999865321
Q ss_pred ---CCCC---CCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 ---NMLD---LKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ---~~~d---l~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
.+.. +.. .+.++++.|++|.|| .+| +||++.++++++.+..... ..
T Consensus 226 ~~~~~~s~~~~~~~~~~~I~i~SfSK~~g-~~GlRiG~ii~~~~l~~~l~~~~~------------------------~~ 280 (410)
T PRK06290 226 FDGKPLSFLSVPGAKEVGVEIHSLSKAYN-MTGWRLAFVVGNELIVKAFATVKD------------------------NN 280 (410)
T ss_pred eCCCCcChhcCCCccccEEEEeechhhcC-CchhheEeEEeCHHHHHHHHHHHh------------------------cc
Confidence 1112 111 235689999999998 557 8999998877655432110 00
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
..+.+.+...++..+++.........++..+.++++.+.|++. ++.+..+.+ +.++++.++.....
T Consensus 281 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~g-------~f~l~v~lp~~~~~ 346 (410)
T PRK06290 281 DSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILNEV-------GFKAEMPGG-------TFYLYVKAPKGTKS 346 (410)
T ss_pred ccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHHhC-------CCeecCCCe-------eeEEEEECCCcccc
Confidence 1122223344444444321111111266677788888888876 566664432 34445566532100
Q ss_pred ---ccCHHHHHHhhhcCC-cEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCH
Q psy16512 407 ---YYGYSEVQNLANLKK-IQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNW 481 (815)
Q Consensus 407 ---~~~~~~v~~~l~~~g-I~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~ 481 (815)
..+..++.+.|.++| |.+.+|..+ .+++||+++.. .++
T Consensus 347 ~~~~~~~~~~~~~Ll~~~~v~~~p~~~~-------------------------------------~~~lRi~~~~~~~~~ 389 (410)
T PRK06290 347 GIKFENAEEFSQYLIKEKLISTVPWDDA-------------------------------------GHFLRFSVTFEAKDE 389 (410)
T ss_pred CCCCCCHHHHHHHHHHhCCEEEECCccc-------------------------------------cCeEEEEEEcccccc
Confidence 012345667776555 554443210 26899999743 478
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
++.++++++|++.+.+
T Consensus 390 ~~~~~~~~~l~~~~~~ 405 (410)
T PRK06290 390 EEEDRILEEIKRRLSD 405 (410)
T ss_pred cchhHHHHHHHHHHhh
Confidence 9999999999987643
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=203.42 Aligned_cols=306 Identities=10% Similarity=0.006 Sum_probs=197.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
...++++|+++.+.. + +++++|+++|+..++.++. ++|| ||++...|+..... .......| ...++..
T Consensus 63 ~~~Le~~iA~le~~~--~--~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~--- 134 (394)
T PRK09028 63 HFAFQAAIVELEGGA--G--TALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM--- 134 (394)
T ss_pred HHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC---
Confidence 678999999998864 3 8899999999999999987 9999 88888888666543 23344455 2223322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .+.++|++|++++++||||.+.|+++|+++|+ ++|+++++|++++.+.. .+...
T Consensus 135 ~~e~l~~-------~l~~~TklV~lespsNPtg~v~dl~~I~~la~-----------~~g~~lvvD~t~a~p~~-~~Pl~ 195 (394)
T PRK09028 135 IGEGIRE-------LIRPNTKVLFLESPGSITMEVQDVPTLSRIAH-----------EHDIVVMLDNTWASPIN-SRPFE 195 (394)
T ss_pred CHHHHHH-------hcCcCceEEEEECCCCCCCcHHHHHHHHHHHH-----------HcCCEEEEECCcccccc-CCccc
Confidence 1122333 34578999999999999999999999999999 89999999999998853 22236
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|.|||++|+.+ .|+++.+++..+.++.. ......+++....+.+..
T Consensus 196 ~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~------------------------~~~~G~~~~p~~a~l~~r 251 (394)
T PRK09028 196 MGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREH------------------------SYLMGQCTSPDDVYLAMR 251 (394)
T ss_pred cCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHH------------------------HHhcCCCCCHHHHHHHHc
Confidence 7999999999999997865 46555444443333211 012233455555555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+ .....+++++|.+.+.+.+. .
T Consensus 252 gl~TL~---lR~~~~~~na~~la~~L~~~------p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~--~ 320 (394)
T PRK09028 252 GLRTLG---VRLAQHEKNALKVANWLATR------PEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKA--V 320 (394)
T ss_pred ccCcHH---HHHHHHHHHHHHHHHHHhcC------CCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHH--H
Confidence 555433 34577888888888888876 433 233232100 01235889999996322111 1
Q ss_pred HHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|+-..+.++.|...+ ++....++.. ... -+..++.||+|+|..+.++-++.|
T Consensus 321 ~~f~~~l~l~~~~~slG~~~sLv~~p~~~~~~~~-----~~~--------------~~~~~~liR~svGlEd~~dLi~Dl 381 (394)
T PRK09028 321 TALVEGMQHFKMGFSWGGFESLILGVFGINKLRT-----ATN--------------WDFSKPLIRLHIGLEDVDDLIADL 381 (394)
T ss_pred HHHHHhCCcceEecccCCCcceeECCCCcCccCc-----hhh--------------hcCCCCeEEEEeCcCCHHHHHHHH
Confidence 235566666666666664322 1110001100 000 133457999999998776667777
Q ss_pred HHHHHH
Q psy16512 488 LSFLNQ 493 (815)
Q Consensus 488 v~~L~~ 493 (815)
.++|++
T Consensus 382 ~~Al~~ 387 (394)
T PRK09028 382 EAGFER 387 (394)
T ss_pred HHHHHH
Confidence 777765
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=204.17 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=187.6
Q ss_pred HHHHHHHHHhHc----C--CCCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N--TDSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | ++++ + |++|+|+++++.+++.++. .+|| |++..+.|+.+.......+... .++++
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~~--I~it~G~~~al~~~~~~l~-~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~ 146 (405)
T PRK09148 70 IPGLRRAQAAYYARRFGVKLNPDTQ--VVATLGSKEGFANMAQAIT-APGDVILCPNPSYPIHAFGFIMAGGVIRSVPAE 146 (405)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCc--EEEcCChHHHHHHHHHHhc-CCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCC
Confidence 567788888776 4 3454 5 9999999999999999998 8999 8888888887655444332221 45555
Q ss_pred chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--
Q psy16512 178 VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-- 255 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-- 255 (815)
.++. ..+.+++++. ...++++++++++|+||||.+++.+++.++++ .|+++++++|+|+++..-.
T Consensus 147 ~~~~-~~~~l~~~~~----~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~--------~a~~~~~~ii~De~Y~~~~~~ 213 (405)
T PRK09148 147 PDEE-FFPALERAVR----HSIPKPIALIVNYPSNPTAYVADLDFYKDVVA--------FAKKHDIIILSDLAYSEIYFD 213 (405)
T ss_pred CCCC-CccCHHHHHh----hccccceEEEEeCCCCCCCcCCCHHHHHHHHH--------HHHHcCeEEEEeccchhhhcC
Confidence 4332 2333333221 23457899999999999999999876555443 2338999999999865311
Q ss_pred --CCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 256 --NMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 256 --~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
....+... +..+++.||+|.|| .+| +||++.++++++.+.... ....
T Consensus 214 ~~~~~s~~~~~~~~~~~i~~~SfSK~~~-~pGlR~G~~v~~~~~i~~l~~~~------------------------~~~~ 268 (405)
T PRK09148 214 GNPPPSVLQVPGAKDVTVEFTSMSKTFS-MAGWRMGFAVGNERLIAALTRVK------------------------SYLD 268 (405)
T ss_pred CCCCCChhhCCCccCcEEEEeccccccC-CcchheeeeeCCHHHHHHHHHHH------------------------HHhc
Confidence 11112111 23466899999999 558 899999888776553211 0111
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.+.+...++..+++.....-.. .+.+++.++++.+.|+++ ++.+..|.+ +.++++.++....
T Consensus 269 ~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~p~~-------g~f~~~~l~~~~~- 333 (405)
T PRK09148 269 YGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGRA-------GWDIPPPAA-------SMFAWAPIPEAFR- 333 (405)
T ss_pred cCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccCCCCe-------eEEEEEECCCccC-
Confidence 233344444444444321111111 256677788888888775 444443432 5677777654211
Q ss_pred ccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 407 YYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 407 ~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
..+..++.+. +.++||.+.+|..+.. ...+++||+++ .+.+.+.
T Consensus 334 ~~~~~~~~~~ll~~~gV~v~pg~~f~~---------------------------------~~~~~~Ri~~~--~~~~~l~ 378 (405)
T PRK09148 334 HLGSLEFSKLLVEKADVAVAPGVGFGE---------------------------------HGDGYVRIALV--ENEQRIR 378 (405)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCC---------------------------------CCCCeEEEEec--CCHHHHH
Confidence 0122345554 5689999998865421 01378999997 3678888
Q ss_pred HHHHHHHHHHh
Q psy16512 486 YFLSFLNQYFL 496 (815)
Q Consensus 486 ~lv~~L~~~~~ 496 (815)
..++.|.+++.
T Consensus 379 ~al~~l~~~l~ 389 (405)
T PRK09148 379 QAARNIKRFLS 389 (405)
T ss_pred HHHHHHHHHHH
Confidence 88888877653
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-20 Score=201.91 Aligned_cols=291 Identities=14% Similarity=0.125 Sum_probs=188.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++ ..+ .++++++++|+.+++.++. ++|| +|++...|.....+. ..+...| ...++.+...
T Consensus 53 ~~~Le~~lA~l~--~~~---~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~ 126 (366)
T PRK07582 53 WRALEAALGELE--GAE---ALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMA 126 (366)
T ss_pred HHHHHHHHHHHc--CCC---EEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChH
Confidence 888999999999 233 5556666789999999986 8999 888777776655433 2344556 3333322111
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~dl 260 (815)
. . ..+++++|++++++||+|.+.|+++|.++|+ ++|++++||++++. +..+++
T Consensus 127 ~-----~--------~~~~t~lV~le~p~NPtg~v~di~~I~~~a~-----------~~g~~lvVD~t~~~~~~~~p~~- 181 (366)
T PRK07582 127 E-----A--------ALAGADLVLAETPSNPGLDVCDLAALAAAAH-----------AAGALLVVDNTTATPLGQRPLE- 181 (366)
T ss_pred H-----H--------hccCceEEEEECCCCCCCCccCHHHHHHHHH-----------HcCCEEEEECCCCCccccCchh-
Confidence 0 1 1256899999999999999999999999999 89999999999753 444443
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
+++|+++.|+||+++++.| .|+++.+ +++.+.++... .+...+++....+.
T Consensus 182 --~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~------------------------~~~g~~~~~~~a~l 235 (366)
T PRK07582 182 --LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWR------------------------LLAGAIPGPFEAWL 235 (366)
T ss_pred --cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHH------------------------HHhCCCCCHHHHHH
Confidence 5789999999999987877 5888875 44444332111 11222344444444
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCc
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~ 407 (815)
+..+++. ....+++..+++..+.+.|++. |.+. ++-|.-.+.+ ...+++++|.+.+ .
T Consensus 236 ~~r~l~t---l~~R~~~~~~na~~la~~L~~~------p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~--~-- 302 (366)
T PRK07582 236 AHRSLGT---LGLRFARQCANALAVAELLAGH------PAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD--A-- 302 (366)
T ss_pred HHhcccc---HHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC--H--
Confidence 4444443 3234577888899999999887 4443 2222210001 1368999999852 2
Q ss_pred cCHHHHHHhhhcCCcEec---cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLR---TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
..+.+.++..++... .|...+-......++ .+.+++.||+|+|+++.++.|
T Consensus 303 ---~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~-----------------------~~~~~~liR~svGlE~~~dli 356 (366)
T PRK07582 303 ---AAAERFVAASRLVVAATSFGGVHTSADRRARWG-----------------------DAVPEGFVRLSCGIEDTDDLV 356 (366)
T ss_pred ---HHHHHHHHhCCcceecccCCCccchhhhHHHcC-----------------------CCCCCCeEEEEeccCCHHHHH
Confidence 235666666665442 222111000000000 123458999999999999999
Q ss_pred HHHHHHHHH
Q psy16512 485 KYFLSFLNQ 493 (815)
Q Consensus 485 ~~lv~~L~~ 493 (815)
+.|.++|++
T Consensus 357 ~dl~~al~~ 365 (366)
T PRK07582 357 ADLERALDA 365 (366)
T ss_pred HHHHHHHhh
Confidence 999998865
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=203.14 Aligned_cols=293 Identities=12% Similarity=0.066 Sum_probs=187.4
Q ss_pred HHHHHHHHHhHcC-----CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEc
Q psy16512 107 IDQMRTKILQYFN-----TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g-----~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~ 176 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++. ++|| |+++.+.|+.+. ..+...| .+++
T Consensus 75 ~~~lr~aia~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~-~~gd~v~i~~P~y~~~~---~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 75 ALSAREAIASYYHNPDGPIEADD--VVLCSGCSHAIEMCIAALA-NAGQNILVPRPGFPLYE---TLAESMGIEVKLYNL 148 (401)
T ss_pred CHHHHHHHHHHHhhcCCCCCHHH--EEECcChHHHHHHHHHHhC-CCCCEEEEeCCCChhHH---HHHHHcCCEEEEeec
Confidence 5678999999987 66666 9999999999999999998 8998 888886665554 3444445 3444
Q ss_pred Cch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc-
Q psy16512 177 SVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC- 253 (815)
Q Consensus 177 ~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~- 253 (815)
+.+ ..++++.+++++ .++++++++++++||||.+++.+++.++++ .|+++|+++++|+++.-
T Consensus 149 ~~~~~~~~d~~~l~~~~-------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~--------~a~~~~~~ii~De~y~~~ 213 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLI-------DEKTAALIVNNPSNPCGSVFSRQHLEEILA--------VAERQCLPIIADEIYGDM 213 (401)
T ss_pred CCccCCCCCHHHHHHHh-------ccCceEEEEcCCCCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEEhhhhhh
Confidence 432 345666665433 356899999999999999998666555444 23389999999988652
Q ss_pred ---CCCCCCCCCCCC---cEEEEccccccccCCc--ceEEEEecc------cccccCcccccCceEEEEecCCccccccc
Q psy16512 254 ---GSNMLDLKQHQP---DFISISFYKMFGYPTG--LGALIVKQK------SAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 254 ---g~~~~dl~~~~~---D~vv~S~~K~~g~p~G--~G~l~~~~~------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
+.....+..... -+++.||+|.|+ .+| +||+++++. .++.++...
T Consensus 214 ~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~~GlRiG~iv~~~~~~~~~~~~~~~~~~~-------------------- 272 (401)
T TIGR01264 214 VFSGATFEPLASLSSTVPILSCGGLAKRWL-VPGWRLGWIIIHDRRGILRDIRDGLVKLS-------------------- 272 (401)
T ss_pred ccCCcccccHHHcCCCCcEEEEccCcccCC-CccceEEEEEecCcchhHHHHHHHHHHHh--------------------
Confidence 111122222222 367889999998 457 899998742 221111000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHH-Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEE
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTM-EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVN 397 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l-~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~ 397 (815)
....+++.+...++..+++.. ...-.. .+.+++.++++.+.|+.+ +++.+..|.+ +.+++
T Consensus 273 -----~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~------~~~~~~~p~~-------g~f~~ 334 (401)
T TIGR01264 273 -----QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAV------PGLRPVMPSG-------AMYMM 334 (401)
T ss_pred -----hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhC------CCCcccCCCe-------eeEEE
Confidence 001233445555555555321 111111 266677777888888876 5655444433 77888
Q ss_pred EEEecCC-CCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 398 FNLLHKD-GTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 398 f~~~~~~-~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+.++... ....+..++.+.+ .++||.+.+|..+.. .+++|+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----------------------------------~~~iRis~ 379 (401)
T TIGR01264 335 VGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY-----------------------------------PGFFRVVL 379 (401)
T ss_pred EEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC-----------------------------------CCeEEEEE
Confidence 8765310 0011223455554 689999998754321 37899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~ 496 (815)
+. +.++++..++.|.+++.
T Consensus 380 ~~--~~~~l~~~l~rl~~~~~ 398 (401)
T TIGR01264 380 TV--PVVMMEEACSRIQEFCE 398 (401)
T ss_pred cC--CHHHHHHHHHHHHHHHh
Confidence 84 57899999999988764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=193.83 Aligned_cols=336 Identities=14% Similarity=0.159 Sum_probs=236.9
Q ss_pred hhhhcccccchhhHHHHHHHHhhcc------ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec-CCchhhH
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENI------FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT-SGATSAI 137 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~------~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t-~g~t~al 137 (815)
+-.++.+.+|++|++++++.+.+.. .+-.|+.....+. ++++++.+.++|+++ ++|.|+|. .|+|.++
T Consensus 7 nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i----~~~~~~~Lr~Ll~~P-~~y~Vlfl~GggT~~~ 81 (364)
T PRK12462 7 NFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSL----LAQAEADLRDLLGIP-DEYGVVFLQGGSSLQF 81 (364)
T ss_pred eecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHH----HHHHHHHHHHHhCCC-CCCeEEEEeccHHHHH
Confidence 3455677889999999988876522 2234555677777 999999999999994 44667665 5599999
Q ss_pred HHHHhhhccCCCc-EE-EecCCCcchhhHHHHhhccc---eEEcCch----hhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 138 KTVSEYFEFNEGS-FI-YLTDNHTSVLGMRELVKTNQ---IYSFSVD----DARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv-~~~~~h~s~~~~~~~~~~~g---~v~~~~~----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
.++..++. .+|+ ++ +....+ --..|.+.+++.| .+..... ...+++.+ ...+..+.|.++
T Consensus 82 ea~~~Nll-~~g~~~~~~~~tG~-fg~r~~~ea~~~g~v~~~~~~~~~~~~~~p~~~~~---------~~~~d~~~v~~t 150 (364)
T PRK12462 82 SMIPMNFS-RPGAAAPEYVTTGY-WSRKAIGEASRVAAMRVVWDGAASGYRTLPSLAEL---------DWDARAPFRHYV 150 (364)
T ss_pred HHHHHHcC-CCCCcEEEEEeCCH-HHHHHHHHHHhcCCceEecCcCCCCCCcCCCHHHh---------ccCCCCcEEEEc
Confidence 99999998 7888 54 333222 1234677777766 2211111 12222222 123457899999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+..+.||+.+| ++.+ .+++++++|+++.++..|+|++++ |+++.+.+|.+| |+|+++++++
T Consensus 151 ~NETstGv~~~-----~~~~-----------~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlg-P~Gltvvivs 211 (364)
T PRK12462 151 SNETVEGLQFP-----DAAG-----------LPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLG-PAGVTVAIIR 211 (364)
T ss_pred cCCCCceEecC-----cccc-----------cCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCC-CCceEEEEEC
Confidence 99999999997 3444 468999999999999999999987 999999999999 9999999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh--hhhH--HHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK--RKSF--TNAFELSQYTYF 364 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~--~~~~--~~~~~l~~~l~~ 364 (815)
++++++..+... .+.+|....+ ......||++..++++..+++++.+. |... ++.++.++.+++
T Consensus 212 ~~al~~~~~~~p---------~~ldy~~~~~---~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~ 279 (364)
T PRK12462 212 RALLERVPDTLP---------PMLDFRTHVE---HRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYA 279 (364)
T ss_pred HHHHhhccccCC---------chhhHHHHHh---cCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999876643210 1111111111 11233499999999999999999775 4333 999999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.+.+. +++....... ..++...++|++.+..- ...+.+.+.++|+..-.|.
T Consensus 280 ~id~~------~~~~~~~~~~---~~RS~mnv~f~~~~~~l----~~~f~~~a~~~gl~~lkGh---------------- 330 (364)
T PRK12462 280 TLDAL------NEVIDCHAHR---AARSTMNVAFRFRQPRL----DTLFKEQSTEAGFCGLSGH---------------- 330 (364)
T ss_pred HHHhC------CCcccCCCCh---hhcCcceEEEEcCCHHH----HHHHHHHHHHCCCccccCC----------------
Confidence 99988 4443332211 23455667777665322 2357888899998765542
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+..|.+|+|+-...+.|++++|+++++++-+.
T Consensus 331 ---------------------r~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 331 ---------------------RSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred ---------------------cccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 11367999998888999999999999987543
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=199.31 Aligned_cols=280 Identities=15% Similarity=0.181 Sum_probs=181.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhh--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR-- 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~-- 182 (815)
..++|+.+++++++++++ |++|+|+++++.+++.++. ++|| |++..+.|+.+.......+... .++++.++.+
T Consensus 67 ~~~lr~~ia~~~~~~~~~--I~it~G~~~al~~~~~~~~-~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~ 143 (357)
T PRK14809 67 HADLTAALADRWDVSPEQ--VWLANGGDGALDYLARAML-DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQ 143 (357)
T ss_pred HHHHHHHHHHHhCCCcce--EEECCCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCc
Confidence 668999999999999987 9999999999999999997 8999 8888877654433322221111 4555433222
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLD 259 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~d 259 (815)
+.+.+.+ .. ++++++++++++||||..+|.+++.++++ .|+ +++++|+|+++..-.. ...
T Consensus 144 ~~~~~~~-------~~-~~~k~i~l~~p~NPTG~~~s~~~~~~l~~--------~~~-~~~~iI~De~y~~~~~~~~~~~ 206 (357)
T PRK14809 144 TADTVLD-------AY-DGERIVYLTSPHNPTGSEIPLDEVEALAE--------RTD-EETLVVVDEAYGEFAERPSAVA 206 (357)
T ss_pred CHHHHHH-------hh-cCCcEEEEeCCCCCCCcCCCHHHHHHHHH--------hCc-cCcEEEEechhhhccCCchhHH
Confidence 2222221 11 35899999999999999999999999887 232 3789999998652211 111
Q ss_pred -CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 260 -LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 260 -l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
+...+.-+++.||+|.|| .+| +||++.++++++.+.... .....+..+..
T Consensus 207 ~~~~~~~vi~~~SfSK~~~-~~GlRiG~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~ 259 (357)
T PRK14809 207 LVEERDDVAVLRTFSKAYG-LAGLRLGYAVVPEEWADAYARVN--------------------------TPFAASELACR 259 (357)
T ss_pred HHhhCCCEEEEecchhHhc-CcchhheeeecCHHHHHHHHHhC--------------------------CCCCCCHHHHH
Confidence 111123477789999999 557 899999988776553211 11233444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
++..++..-.......+..++.++++.+.|... .+ +. .+.++++.+. + ..++.+.
T Consensus 260 ~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~----------~~-~~-------~g~f~~~~~~--~-----~~~~~~~ 314 (357)
T PRK14809 260 AGLAALDDDEHVERTVETARWAREYIREELDAP----------TW-ES-------AGNFVLAEVG--D-----ASAVAEA 314 (357)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCc----------cC-CC-------CCCEEEEECC--C-----HHHHHHH
Confidence 444444321111111144455555555555432 11 22 2667777653 1 2347778
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.++||.+++|..+.. .+++|++++ +.+++++++++|++++.
T Consensus 315 l~~~gv~v~~g~~f~~-----------------------------------~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 315 AQERGVIVRDCTSFGL-----------------------------------PECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred HHHCCEEEEECccCCC-----------------------------------CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 8899999998865421 268999987 57999999999998764
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=203.36 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=187.6
Q ss_pred HHHHHHHHhHcCC--CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--h
Q psy16512 108 DQMRTKILQYFNT--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--A 181 (815)
Q Consensus 108 ~~~r~~la~~~g~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~ 181 (815)
+.+.+.+++.+|. ++++ |++|+|+++|+.+++.++. ++|| ++++.+.|+.+..+....+... .++.+.++ .
T Consensus 77 ~~ia~~l~~~~g~~~~~~~--i~~t~G~~~al~~~~~~~~-~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~ 153 (402)
T PRK06107 77 KAIIAKLERRNGLHYADNE--ITVGGGAKQAIFLALMATL-EAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFK 153 (402)
T ss_pred HHHHHHHHHhcCCCCChhh--EEEeCCHHHHHHHHHHHhc-CCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCC
Confidence 3444455555566 4555 9999999999999998886 8999 8888877766654443332211 34443222 2
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC-CeEEEEeccccc----CCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS-NCFVLLDAATYC----GSN 256 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~-gi~vivD~a~~~----g~~ 256 (815)
++++.+++ .+.++++++++++++||||..+|.+++.++++ .|+++ ++++|+|.+++. +..
T Consensus 154 ~~~~~l~~-------~~~~~~~~v~l~~p~NPtG~~~s~~~~~~l~~--------~a~~~~~~~iI~De~y~~l~~~~~~ 218 (402)
T PRK06107 154 LTPEALEA-------AITPRTRWLILNAPSNPTGAVYSRAELRALAD--------VLLRHPHVLVLTDDIYDHIRFDDEP 218 (402)
T ss_pred CCHHHHHh-------hcCcCceEEEEECCCCCCCcCcCHHHHHHHHH--------HHHHcCCeEEEEehhccccccCCCC
Confidence 44555554 33467899999999999999999877666654 33377 999999987642 111
Q ss_pred CCCCCCC-----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 257 MLDLKQH-----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 257 ~~dl~~~-----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
...+... +.-+++.|++|.|+ ++| +||++.++++++.+.... .....+
T Consensus 219 ~~~~~~~~~~~~~~vi~~~S~SK~~~-~pGlRiG~~~~~~~~~~~~~~~~------------------------~~~~~~ 273 (402)
T PRK06107 219 TPHLLAAAPELRDRVLVTNGVSKTYA-MTGWRIGYAAGPADLIAAINKLQ------------------------SQSSSC 273 (402)
T ss_pred CCCHHHhCcCccCCEEEEeccchhhc-CcccceeeeecCHHHHHHHHHHH------------------------HhcccC
Confidence 1111111 23477789999998 557 699999888776553321 111224
Q ss_pred CChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-----
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK----- 403 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~----- 403 (815)
++.....++..+++.-...-.. .+.+.+.++.+.+.|+++ +++.+..+.+ +.++++.+...
T Consensus 274 ~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~g~~~~~p~g-------g~~~~~~~~~~~~~~~ 340 (402)
T PRK06107 274 PSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNAI------PGLSCLVPDG-------AFYLYVNCAGLIGKTT 340 (402)
T ss_pred CChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhcC------CCCcccCCCc-------ceEEeeeccccccccc
Confidence 5556666665555321111112 255667777788888765 5666655443 55556555321
Q ss_pred -CCCcc-CHHH-HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 404 -DGTYY-GYSE-VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 404 -~~~~~-~~~~-v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.+... +..+ +.+++.++||.+++|..+.. .+++|+|++. +
T Consensus 341 ~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~-----------------------------------~~~iRis~~~--~ 383 (402)
T PRK06107 341 PEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL-----------------------------------SPYFRLSIAT--S 383 (402)
T ss_pred ccccCCCCHHHHHHHHHHhCCEEEeCccccCC-----------------------------------CCeEEEEeCC--C
Confidence 11101 2223 44666889999998865421 2789999994 6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
.+++++.++.|.+++.+
T Consensus 384 ~e~l~~~l~~l~~~l~~ 400 (402)
T PRK06107 384 LETLEEACARIERAVAA 400 (402)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999887643
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=204.43 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++. ++|| |+++.+.|+.+.......+... .++++.
T Consensus 75 ~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~ 151 (409)
T PLN02656 75 LPQARRAIAEYLSRDLPYKLSLDD--VFITSGCTQAIDVALSMLA-RPGANILLPRPGFPIYELCAAFRHLEVRYVDLLP 151 (409)
T ss_pred CHHHHHHHHHHHHHhcCCCCCccc--EEEeCChHHHHHHHHHHHh-CCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCC
Confidence 6678888888874 45665 9999999999999999987 8999 8898988876654444332222 556543
Q ss_pred h--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 179 D--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 179 ~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
+ ..++++.++++ +.++++++++++|+||||.+++.+++.++++ .|+++++++|+|+++..-.
T Consensus 152 ~~~~~~d~~~l~~~-------~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~--------~a~~~~~~ii~De~y~~~~~ 216 (409)
T PLN02656 152 EKGWEVDLDAVEAL-------ADQNTVALVIINPGNPCGNVYSYQHLKKIAE--------TAEKLKILVIADEVYGHLAF 216 (409)
T ss_pred cCCCCCCHHHHHHH-------hccCceEEEEECCCCCCCCCCCHHHHHHHHH--------HHHHcCCEEEEehhhhhccc
Confidence 2 23566665543 3467899999999999999998666555544 2338999999999865211
Q ss_pred ---CCCCC---CCCCCcEEEEccccccccCCc--ceEEEEec--------ccccccCcccccCceEEEEecCCccccccc
Q psy16512 256 ---NMLDL---KQHQPDFISISFYKMFGYPTG--LGALIVKQ--------KSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 256 ---~~~dl---~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~--------~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
...++ .....-+++.||+|.|+ .+| +||+++++ ++++.+....
T Consensus 217 ~~~~~~~~~~~~~~~~vi~~~SfSK~f~-~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~-------------------- 275 (409)
T PLN02656 217 GSNPFVPMGVFGSIVPVLTLGSLSKRWI-VPGWRLGWFVTTDPSGSFRDPKIVERIKKYF-------------------- 275 (409)
T ss_pred CCCCcccHHHhcccCcEEEEcccchhcc-CcceeEEEEEEeCcccccccHHHHHHHHHHH--------------------
Confidence 11111 12224477889999988 447 89999852 3333332110
Q ss_pred CccccccCCCCChhHHHHHHHHHHHH-Hhhhh-hHHHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceE
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTM-EKKRK-SFTNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIV 396 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l-~~~~~-~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~ 396 (815)
.. .+.++.+...++..+++.. ...-. ..++.++.++.+.+.|+.+ +++.. ..|.+ +.++
T Consensus 276 ----~~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~------~~~~~~~~p~g-------g~~~ 337 (409)
T PLN02656 276 ----DI-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEI------PCITCPHKPEG-------SMAV 337 (409)
T ss_pred ----hh-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhC------CCCcCCcCCCe-------EEEE
Confidence 00 1234555666665665421 11111 1256677778888888776 33322 22332 5666
Q ss_pred EEEEecC--CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 397 NFNLLHK--DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 397 ~f~~~~~--~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
+++++.. ....-+...+.+++.++||.+.+|..|.. .+++||+
T Consensus 338 w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~-----------------------------------~~~iRi~ 382 (409)
T PLN02656 338 MVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL-----------------------------------KNWLRIT 382 (409)
T ss_pred EEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC-----------------------------------CCeEEEE
Confidence 7666421 10000112356778899999998865420 3789999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 475 YGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
++. ++++++..++.|++++...+
T Consensus 383 ~~~--~~e~l~eal~rl~~~~~~~~ 405 (409)
T PLN02656 383 FAA--DPSSLEEALGRIKSFYLRHS 405 (409)
T ss_pred eCC--CHHHHHHHHHHHHHHHHHhc
Confidence 994 68999999999988765433
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=202.29 Aligned_cols=326 Identities=11% Similarity=0.078 Sum_probs=200.7
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.++.+.+++.+.+..... + .+..... ..++|+.++++++ +++++ |++|+|+++|+.+++.++.
T Consensus 70 ~~~~~~~a~~~al~~~~~-~---~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~--v~it~G~~~al~l~~~~l~- 138 (430)
T PLN00145 70 TAPEAEDAVAAALRSGKY-N---SYSTCVG----LLPARRAIAEYLSRDLPYELSTDD--IYLTAGCAQAIEIIMSVLA- 138 (430)
T ss_pred CCHHHHHHHHHHHHcCcC-C---CCCCCcc----CHHHHHHHHHHHhhccCCCCChhh--EEEeCCHHHHHHHHHHHhc-
Confidence 346677777665543211 0 1111223 6788899999874 35565 9999999999999999998
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
++|| |+++.+.|+.+.......+... .+++.++ ..++++.++++ ++++++++++++|+||||.++|.++
T Consensus 139 ~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~-------~~~~~~~i~i~~P~NPtG~v~~~~~ 211 (430)
T PLN00145 139 QPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEAL-------ADENTVAMVIINPNNPCGSVYSYEH 211 (430)
T ss_pred CCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHH-------hCcCceEEEEeCCCCCCCCCCCHHH
Confidence 8999 9999888877654443332222 4444332 34566666543 3467999999999999999999555
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCC----CCCCC---CCCCCcEEEEccccccccCCc--ceEEEEe--ccc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDL---KQHQPDFISISFYKMFGYPTG--LGALIVK--QKS 291 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl---~~~~~D~vv~S~~K~~g~p~G--~G~l~~~--~~~ 291 (815)
+.++++ .|+++|+++|+|+++..-. ....+ .....-+++.|++|.|+ .+| +||+++. +.+
T Consensus 212 l~~i~~--------~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~pG~RlG~iv~~~~~~~ 282 (430)
T PLN00145 212 LAKIAE--------TARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWV-VPGWRLGWIATCDPNGI 282 (430)
T ss_pred HHHHHH--------HHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccC-CCCeeEEEEEEecchhh
Confidence 444433 2228999999998865211 11222 22234578889999998 458 8999984 222
Q ss_pred cccc--CcccccCceEEEEecCCcccccccCcccccc-CCCCChhHHHHHHHHHHH-HHhhhhhH-HHHHHHHHHHHHHH
Q psy16512 292 AHVL--NKTFYGGGTVKISMANENFHIKKDGLFEKFE-DGTVNYLAIISLKYGFDT-MEKKRKSF-TNAFELSQYTYFYF 366 (815)
Q Consensus 292 ~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~al~~al~~-l~~~~~~~-~~~~~l~~~l~~~L 366 (815)
++.. ...+ ..... ...++.....++..+++. ....-..+ +.+++.++.+.+.|
T Consensus 283 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 340 (430)
T PLN00145 283 LKETKVVDSI----------------------RNYLNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKI 340 (430)
T ss_pred hhhhHHHHHH----------------------HHHhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 0000 00000 112344555555555542 11111122 67777788888888
Q ss_pred HhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecC--CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 367 KQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHK--DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~--~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.+ +++..+ .|.+ +.++++.++.. .+..-+...+.+++.++||.+.+|..+..
T Consensus 341 ~~~------~g~~~~~~P~g-------a~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~----------- 396 (430)
T PLN00145 341 KEI------KCITCPHKPEG-------SMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM----------- 396 (430)
T ss_pred hcC------CCCCCCcCCCe-------eeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-----------
Confidence 876 566543 3433 56667666421 01000122345677889999998865321
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|||++. +.++++..++.|.+++..
T Consensus 397 ------------------------~~~lRis~~~--~~~~l~~al~rl~~~~~~ 424 (430)
T PLN00145 397 ------------------------KNWLRITFAI--DPPSLEDGLERLKSFCLR 424 (430)
T ss_pred ------------------------CCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 3799999984 678888888888887644
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=201.16 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=187.5
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ +|++|+|+++|+.+++.++. .+|| |++..+.|+.+.......+... .++++.
T Consensus 73 ~~~lR~~ia~~l~~~~~~~~~~~~-~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 150 (403)
T PRK08636 73 IYKLRLAICNWYKRKYNVDLDPET-EVVATMGSKEGYVHLVQAIT-NPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEY 150 (403)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCC-eEEECCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccc
Confidence 556777777765 5 34441 39999999999999999998 8999 8888888877665555433322 445532
Q ss_pred --hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC--
Q psy16512 179 --DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-- 254 (815)
Q Consensus 179 --~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-- 254 (815)
+..++.+.+...+.+..+...++++++++++|+||||.+++.+++.++++ .|+++++++|+|.++..-
T Consensus 151 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~--------~a~~~~~~II~De~Y~~l~~ 222 (403)
T PRK08636 151 NEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVA--------LAKKERFYIISDIAYADITF 222 (403)
T ss_pred cccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHH--------HHHHcCcEEEEeccchhhcc
Confidence 23556554433222111122356899999999999999999887666655 344899999999886521
Q ss_pred --CCCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 255 --SNMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 255 --~~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
.....+..+ +..+++.|++|.|| .+| +||++.++++++.+..... ...
T Consensus 223 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlRiG~iv~~~~li~~~~~~~~-----------------------~~~ 278 (403)
T PRK08636 223 DGYKTPSILEVEGAKDVAVESYTLSKSYN-MAGWRVGFVVGNKKLVGALKKIKS-----------------------WLD 278 (403)
T ss_pred CCCCCCChhcCCCccccEEEEEecccccC-CccceeeeeeCCHHHHHHHHHHHH-----------------------Hhc
Confidence 111122222 12355789999998 447 8999988887665432210 000
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
.++.. ....++..+++.....-.. .+...+.++.+.+.|+.. ++.+..+.+ +.++++.++....
T Consensus 279 ~~~~~-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~p~~-------g~~~~~~l~~~~~ 343 (403)
T PRK08636 279 YGMFT-PIQVAATIALDGDQSCVEEIRETYRKRRDVLIESFANA-------GWELQKPRA-------SMFVWAKIPEPAR 343 (403)
T ss_pred ccCCh-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCc-------ceEEEEECCCccC
Confidence 11222 2222332333211111111 155666677777888765 455554443 6777777764211
Q ss_pred CccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 406 TYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 406 ~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
..+..++. +++.++||.+.+|..+.. ...+++||+++ .+.+++
T Consensus 344 -~~~~~~l~~~ll~~~gV~v~pg~~f~~---------------------------------~~~~~iRi~~~--~~~~~l 387 (403)
T PRK08636 344 -HLGSLEFSKQLLTEAKVAVSPGIGFGE---------------------------------YGDEYVRIALI--ENENRI 387 (403)
T ss_pred -CCCHHHHHHHHHHhCCEEEecchhhCc---------------------------------CCCCeEEEEec--CCHHHH
Confidence 01122455 456789999998865421 11379999998 478889
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
+..++.|.+++.
T Consensus 388 ~~~~~rl~~~l~ 399 (403)
T PRK08636 388 RQAARNIKKFLK 399 (403)
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=204.13 Aligned_cols=298 Identities=11% Similarity=0.051 Sum_probs=185.7
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCC---Cc-EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNE---GS-FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~---gd-vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
..++|+.+++++ | +++++ .|++|+|+++|+.++++++. ++ || |++..+.|+.+.......+... .+
T Consensus 67 ~~~lr~~ia~~~~~~~g~~~~~~~~-~i~it~G~~~al~~~~~~l~-~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v 144 (396)
T PRK09147 67 LPALREAIAAWLERRYGLPALDPAT-QVLPVNGSREALFAFAQTVI-DRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFL 144 (396)
T ss_pred CHHHHHHHHHHHHHHhCCCcCCccc-eEEECCChHHHHHHHHHHHc-CCCCCCCEEEEcCCCccchHHHHHhcCCEEEEe
Confidence 456777777754 6 44431 39999999999999999998 88 77 8888877766554444433222 55
Q ss_pred EcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 175 SFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 175 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
+++.++ .++++.+++.+ .++++++++++|+||||.+++.+++.++++ .|+++++++|+|.++.
T Consensus 145 p~~~~~~~~~d~~~l~~~~-------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~y~ 209 (396)
T PRK09147 145 NCDPANNFAPDFDAVPAEV-------WARTQLLFVCSPGNPTGAVLPLDDWKKLFA--------LSDRYGFVIASDECYS 209 (396)
T ss_pred ccCccccCccCHHHHHHHH-------hhccEEEEEcCCCCCcCccCCHHHHHHHHH--------HHHHcCeEEEeecccc
Confidence 665432 35566665422 247899999999999999999888776665 4448999999999865
Q ss_pred cCC-----CCCC-C--------CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccc
Q psy16512 253 CGS-----NMLD-L--------KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 253 ~g~-----~~~d-l--------~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.-. .+.. + ...+.-+++.|++|.|+ .+| +||++.++++++.+....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRiG~~~~~~~l~~~~~~~~----------------- 271 (396)
T PRK09147 210 EIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSN-VPGLRSGFVAGDAALLKKFLLYR----------------- 271 (396)
T ss_pred ccccCCCCCCchhhhhccccCccccccEEEEeccccccC-CccceeeeecCCHHHHHHHHHHh-----------------
Confidence 321 1111 1 01123388899999988 447 899999887766553211
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
.+...+.+.....++.+++.....+....+.+++.++.+.+.|++. +.+..|. .+.++
T Consensus 272 -------~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~~p~-------~g~f~ 329 (396)
T PRK09147 272 -------TYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDAVTPILAPV--------LDVQLPD-------AGFYL 329 (396)
T ss_pred -------hhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh--------cCCCCCC-------eeEEE
Confidence 0111233444444444444221111112255666666677777653 2223232 36777
Q ss_pred EEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 397 NFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 397 ~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
++.++ .+ ..++.+. +.++||.+.+|..+..... +. ....+++|+++
T Consensus 330 ~~~~~-~~-----~~~~~~~ll~~~gv~v~pg~~f~~~~~----~~-----------------------~~~~~~iRi~~ 376 (396)
T PRK09147 330 WAKVP-GD-----DTEFARRLYADYNVTVLPGSYLAREAH----GV-----------------------NPGAGRVRIAL 376 (396)
T ss_pred EEECC-CC-----HHHHHHHHHHhCCEEEeCCcccccccc----CC-----------------------CCCCCeEEEEe
Confidence 77775 11 1235444 4688999999875532100 00 01137999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~ 496 (815)
+. ++++++..++.|.+++.
T Consensus 377 ~~--~~~~l~~~l~rl~~~~~ 395 (396)
T PRK09147 377 VA--PLAECVEAAERIVDFCR 395 (396)
T ss_pred cC--CHHHHHHHHHHHHHHhc
Confidence 84 57889999999988663
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=203.66 Aligned_cols=321 Identities=12% Similarity=0.091 Sum_probs=204.2
Q ss_pred chhhHHHHHHHHhhccccCCCC-h-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc-cCCCc
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHG-N-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE-FNEGS 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s-~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~-~~~gd 150 (815)
++.+.+++.+.+.....+...+ . +..... ..++++.+++++|. ++. +++++ +++|+..++..+. ..+++
T Consensus 62 ~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~----~~~l~~~la~~~g~-~~~--~~~~s-G~~an~~ai~~l~~~~~~~ 133 (407)
T PRK09064 62 HPKVIEAMIEALDRCGAGAGGTRNISGTNHY----HVELERELADLHGK-EAA--LVFTS-GYVSNDATLSTLAKLIPDC 133 (407)
T ss_pred CHHHHHHHHHHHHHcCCCCCCcCcCccCHHH----HHHHHHHHHHHhCC-CcE--EEECc-HHHHHHHHHHHHhCCCCCC
Confidence 5668888877665422211111 1 122344 78999999999995 332 55555 5567777666654 13677
Q ss_pred EEEe-cCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcC-CCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 FIYL-TDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMR-HSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 vv~~-~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
+++. ...|.+........+.. ...+... +.+.+++.++ ... +++++|++++++|++|.+.|+++|.++|+
T Consensus 134 ~i~~~~~~h~s~~~~~~~~~~~-~~~~~~~---d~~~le~~l~----~~~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~ 205 (407)
T PRK09064 134 VIFSDELNHASMIEGIRRSRCE-KHIFRHN---DVAHLEELLA----AADPDRPKLIAFESVYSMDGDIAPIAEICDLAD 205 (407)
T ss_pred EEEEeCcchHHHHHHHHHcCCc-EEEECCC---CHHHHHHHHH----hccCCCCeEEEEeCCCCCCccccCHHHHHHHHH
Confidence 5554 45677765443332111 2222221 3334444332 122 46899999999999999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCC-CC-----CCCC--CCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSN-ML-----DLKQ--HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~-----dl~~--~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++++|++|+.|.. +. .... ..+|+++.|++|.|| +.| |+++.++++++.+.....
T Consensus 206 -----------~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g-~~G-G~~~~~~~~~~~l~~~~~ 272 (407)
T PRK09064 206 -----------KYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFG-VMG-GYIAGSAALVDAVRSYAP 272 (407)
T ss_pred -----------HcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhh-ccC-ceEecCHHHHHHHHHhCc
Confidence 89999999999985531 11 1111 246899999999999 556 888888777654422110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
+ ..+ ..+.+....+++.++++++...+...++..++++++.+.|+++ ++.+
T Consensus 273 ~---------------------~~~-t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 323 (407)
T PRK09064 273 G---------------------FIF-TTSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAA-------GIPV 323 (407)
T ss_pred c---------------------ccc-cCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCCC
Confidence 0 011 2234455667777888888765433488889999999999886 5555
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
+.+. ++++.+.+.+.. ...++.+.| .++||.++...+.. ..
T Consensus 324 ~~~~--------~~iv~i~~~~~~----~~~~l~~~L~~~~gi~v~~~~~p~---~~----------------------- 365 (407)
T PRK09064 324 MPNE--------SHIVPVMVGDPE----KCKKASDMLLEEHGIYVQPINYPT---VP----------------------- 365 (407)
T ss_pred CCCC--------CCEEEEEeCCHH----HHHHHHHHHHHhCCEEEeeECCCC---CC-----------------------
Confidence 5332 567777664311 112466665 46799997642211 00
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|||++.++|++|+++++++|++++.
T Consensus 366 ------~~~~~lRis~~~~~t~edi~~l~~~l~~~~~ 396 (407)
T PRK09064 366 ------RGTERLRITPTPFHTDEMIDHLVEALVEVWA 396 (407)
T ss_pred ------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 0125799999999999999999999999764
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-20 Score=202.38 Aligned_cols=326 Identities=13% Similarity=0.054 Sum_probs=195.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~ 183 (815)
.++++++++++.|+... +++++ ++.|+..++.++. ++|| ||++...|++...+...+...| ...++.. +
T Consensus 49 ~~~lE~~la~leg~~~~---v~~ss-G~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~---d 120 (397)
T PRK05939 49 TAALEAKITKMEGGVGT---VCFAT-GMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT---D 120 (397)
T ss_pred HHHHHHHHHHHhCCCeE---EEeCC-HHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC---C
Confidence 88999999999998652 56555 4789999999887 9999 8888888877655444455566 3333322 3
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
.+.+++ .++++|++|++++++||||.+.|+++|.++|+ ++|+++++|++++.+.. ++...+
T Consensus 121 ~e~l~~-------~l~~~tklV~vesp~NptG~v~dl~~I~~la~-----------~~gi~livD~t~a~~~~-~~~~~~ 181 (397)
T PRK05939 121 VQNVAA-------AIRPNTRMVFVETIANPGTQVADLAGIGALCR-----------ERGLLYVVDNTMTSPWL-FRPKDV 181 (397)
T ss_pred HHHHHH-------hCCCCCeEEEEECCCCCCCCHHhHHHHHHHHH-----------HcCCEEEEECCcccccc-cCcccc
Confidence 444444 34578999999999999999999999999999 89999999999987743 445566
Q ss_pred CCcEEEEccccccccCCc-ceEEEEecccccccCcccccCceEEE-EecC--Cccccc-ccCccccccCCCCChhHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG-LGALIVKQKSAHVLNKTFYGGGTVKI-SMAN--ENFHIK-KDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~~~~~g~~~~~~-~~~~--~~~~~~-~~~~~~~~~~gt~~~~~~~al 338 (815)
++|+++.|+||+++++.+ +|++++.+...+.. ++..... ...+ ..+... ......+...+.++....+.+
T Consensus 182 gaDivv~S~sK~~~g~g~~igg~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~ 256 (397)
T PRK05939 182 GASLVINSLSKYIAGHGNALGGAVTDTGLFDWS-----AYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRI 256 (397)
T ss_pred CCEEEEecCeecccCCCCeEEEEEecCcccccc-----cccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 899999999999995533 57766643321100 0000000 0000 000000 000001122344444444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+ .....|++++|.+.+. ..
T Consensus 257 ~rgl~tl~---~R~~~~~~na~~la~~L~~~------p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~--~~- 324 (397)
T PRK05939 257 AIGAETLA---LRVDRSCSNALALAQFLEAH------PKVARVYYPGLASHPQHARATELFRHYGGLLSFELADG--ID- 324 (397)
T ss_pred HcCcCcHH---HHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCH--HH-
Confidence 44444433 24466666788888888876 443 233232100 0135689999999742 11
Q ss_pred CHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.+.++-..+.++.|... .++....+..++++.... .|.+++.||+|+|..+.++-++
T Consensus 325 -~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~lvR~svGlEd~~dLi~ 388 (397)
T PRK05939 325 -CFDFLNRLKLVIKATHLGDTRTLVIPVAPTIYYEMGAERRAS---------------MGIADSLIRVSVGIEDEADLIA 388 (397)
T ss_pred -HHHHHHhCCcceEccCCCCCCeeeecCcccccccCCHHHHHh---------------cCCCCCeEEEEeCCCCHHHHHH
Confidence 123555555444445555322 222222344455443322 2566789999999865555455
Q ss_pred HHHHHHH
Q psy16512 486 YFLSFLN 492 (815)
Q Consensus 486 ~lv~~L~ 492 (815)
.|.++|+
T Consensus 389 dl~~Al~ 395 (397)
T PRK05939 389 DFEQALD 395 (397)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=202.92 Aligned_cols=332 Identities=13% Similarity=0.055 Sum_probs=202.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
...+++.++++.|.+. .++++++++|+.+++.++. ++|| ||++...|.+... +...+...| ...++..
T Consensus 65 ~~~le~~lA~l~g~~~----al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~--- 136 (427)
T PRK05994 65 NAVLEERVAALEGGTA----ALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD--- 136 (427)
T ss_pred HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC---
Confidence 7789999999999864 5777888899999999987 8999 8888888876544 334455566 3444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 137 d~~~l~~-------ai~~~tklV~vesp~NptG~v~dl~~I~~la~-----------~~gi~livD~a~a~~~~~~pl-~ 197 (427)
T PRK05994 137 DPASFER-------AITPRTKAIFIESIANPGGTVTDIAAIAEVAH-----------RAGLPLIVDNTLASPYLIRPI-E 197 (427)
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCccccccCCcc-c
Confidence 3444444 33468999999999999999999999999999 899999999999887654433 5
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEecccccccC----cccc----cCceEEEEecCCc--ccccccCccccccCCCCC
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVKQKSAHVLN----KTFY----GGGTVKISMANEN--FHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~----~~~~----g~~~~~~~~~~~~--~~~~~~~~~~~~~~gt~~ 331 (815)
+++|+++.|+||++|++.| +|.+++......-.. +.+. +.+.......... ..........+....+++
T Consensus 198 ~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 277 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAIS 277 (427)
T ss_pred cCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCC
Confidence 7899999999999996655 676666422111000 0000 0000000000000 000000000112233344
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC----------CCCcccceEEEEE
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG----------ESKYQGNIVNFNL 400 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~----------~~~~~~~i~~f~~ 400 (815)
....+.+..+ +..+...+++..+.+..+.+.|++. |.++ ++-|...+ .....+++++|.+
T Consensus 278 ~~~A~l~~~~---l~tL~~r~~~~~~~a~~la~~L~~~------p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l 348 (427)
T PRK05994 278 PFNAFLILTG---IETLPLRMQRHSDNALAVAEWLKGH------PKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGL 348 (427)
T ss_pred HHHHHHHHcC---cccHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEe
Confidence 3333333333 3344345588888888999999877 4443 33232101 0134688999999
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
.+. .+. ...+.+.|....+.++.|... .++....+..++++.... .|.+++.||+|+|.
T Consensus 349 ~~~-~~~--~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~---------------~gi~~~liRlsvGl 410 (427)
T PRK05994 349 KGG-YEA--GVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVA---------------AGAGPDVVRLSIGI 410 (427)
T ss_pred cCC-HHH--HHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHh---------------cCCCCCcEEEEecc
Confidence 642 111 124666666666666666422 233333344455443322 25567899999998
Q ss_pred CCCHHHHHHHHHHHH
Q psy16512 478 ASNWDDVKYFLSFLN 492 (815)
Q Consensus 478 ~~t~edi~~lv~~L~ 492 (815)
.+.++-++.|-++|+
T Consensus 411 E~~~dli~dl~~Al~ 425 (427)
T PRK05994 411 EDVDDIIADLEQALA 425 (427)
T ss_pred CCHHHHHHHHHHHHh
Confidence 765555555555554
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=202.97 Aligned_cols=304 Identities=10% Similarity=0.017 Sum_probs=192.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+.. +++ +++++|+.+++.++. ++|| ||++...|++.+. +...+...| ...++. .
T Consensus 63 ~~~Le~~lA~~~g~~~~---i~~-~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~---~ 134 (388)
T PRK07811 63 RTALEEQLAALEGGAYG---RAF-SSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL---S 134 (388)
T ss_pred HHHHHHHHHHHhCCCce---EEe-CCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC---C
Confidence 88999999999998753 555 456899999999997 9999 8888888886544 333444445 233332 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 135 d~e~l~~-------~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~-----------~~gi~lIvD~a~a~~~~~~p~-~ 195 (388)
T PRK07811 135 DLDAVRA-------AITPRTKLIWVETPTNPLLSITDIAALAELAH-----------DAGAKVVVDNTFASPYLQQPL-A 195 (388)
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCcceecCHHHHHHHHH-----------HcCCEEEEECCCCccccCCch-h
Confidence 4455544 33468999999999999999999999999999 899999999999887643333 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
.++|++++|++|++++|.+ .|+++++++ +.+.++.... ......+....+
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~------------------------~~g~~~s~~~a~--- 248 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN------------------------GAGAVPGPFDAY--- 248 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH------------------------hcCCCCCHHHHH---
Confidence 5789999999999996655 488887654 3333321110 001122222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.++..+......+++..+++..+.+.|++. |.++ ++-|...+. ....|++++|.+.+.. +.
T Consensus 249 l~~~~L~tl~~R~~~~~~na~~la~~L~~~------p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~-~~-- 319 (388)
T PRK07811 249 LTLRGLKTLAVRMDRHSENAEAVAEFLAGH------PEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGE-EA-- 319 (388)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHhC------CCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCH-HH--
Confidence 222333333334577778888888888877 5543 333321110 1246889999996421 11
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|.-..+.++.|...+ ++....+..++.+. -|..++.||+|+|..+.++-++.
T Consensus 320 ~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~------------------~gi~~~liR~svGlE~~~dl~~d 381 (388)
T PRK07811 320 ARDFCARTKVFTLAESLGGVESLIEHPSAMTHASTAGSQ------------------LEVPDDLVRLSVGIEDVADLLAD 381 (388)
T ss_pred HHHHHHhCCcceeeccCCCCcceEeCCcccCcccCCHhh------------------cCCCCCEEEEEeCCCCHHHHHHH
Confidence 1245566666566666664221 11111222222111 15667899999998765555555
Q ss_pred HHHHH
Q psy16512 487 FLSFL 491 (815)
Q Consensus 487 lv~~L 491 (815)
|.++|
T Consensus 382 l~~al 386 (388)
T PRK07811 382 LEQAL 386 (388)
T ss_pred HHHHh
Confidence 55555
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-20 Score=202.36 Aligned_cols=307 Identities=14% Similarity=0.087 Sum_probs=196.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+. .++++++++|+.+++.++. ++|| |+++...|.+.... ...+...| ...++.+
T Consensus 42 ~~~le~~la~l~g~~~----a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 113 (369)
T cd00614 42 VDALEKKLAALEGGEA----ALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPD--- 113 (369)
T ss_pred HHHHHHHHHHHHCCCC----EEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCC---
Confidence 8899999999999743 5677788899999999997 8999 88888888776543 33444556 3333332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+++++++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 114 d~~~l~~-------~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~-----------~~g~~livD~t~~~~~~~~~~-~ 174 (369)
T cd00614 114 DPEALEA-------AIKPETKLVYVESPTNPTLKVVDIEAIAELAH-----------EHGALLVVDNTFATPYLQRPL-E 174 (369)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCcchhcCChh-h
Confidence 2344443 33467999999999999999999999999999 899999999999877542222 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|+++++.. .|+++.++ +++++++... +...++++....+++.
T Consensus 175 ~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~------------------------~~~g~~~~p~~a~~~l 230 (369)
T cd00614 175 LGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLR------------------------LALGTILSPFDAWLLL 230 (369)
T ss_pred hCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHH------------------------HhhCCCCCHHHHHHHH
Confidence 5789999999999995533 68888877 6655553221 1112233434333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++ .....+++..+++.++.+.|++. |.+. ++-|.-.+. ....+++++|.+.+ +.+.
T Consensus 231 ~~l~---tl~~r~~~~~~na~~la~~L~~~------~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~~~~-- 298 (369)
T cd00614 231 RGLK---TLPLRMERHSENALKVAEFLEKH------PKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-GLEA-- 298 (369)
T ss_pred cCCC---CHHHHHHHHHHHHHHHHHHHHcC------CCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-CHHH--
Confidence 3433 33234477788888999999887 4332 222210000 12358999999863 2111
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|....+.++.|...+ ++....+.+++++.... -|.+++.||+|+|. ||++.
T Consensus 299 ~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~---------------~g~~~~liR~svGl----E~~~d 359 (369)
T cd00614 299 AKKFLNALKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAA---------------AGITPGLVRLSVGI----EDVED 359 (369)
T ss_pred HHHHHHcCCcceEcccCCCCceeeeCCcccccccCCHHHHHh---------------cCCCCCeEEEEeCc----CCHHH
Confidence 1235555555555555553221 22222233343332211 15557899999997 45666
Q ss_pred HHHHHHHHH
Q psy16512 487 FLSFLNQYF 495 (815)
Q Consensus 487 lv~~L~~~~ 495 (815)
|++.|++.+
T Consensus 360 l~~dl~~al 368 (369)
T cd00614 360 LIADLEQAL 368 (369)
T ss_pred HHHHHHHhh
Confidence 666665543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=194.42 Aligned_cols=320 Identities=15% Similarity=0.132 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+.+++++.+.+.....+...+. ...... ..++++.||+++|.+.. ++|++|-. |+..++.++. +++| +
T Consensus 56 ~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~----h~~LE~~lA~f~g~e~a---l~f~SGy~-AN~~~i~~l~-~~~dli 126 (388)
T COG0156 56 PELIEAAKAAIRRYGVGAGGSRLISGTSDL----HVELEEELADFLGAEAA---LLFSSGFV-ANLGLLSALL-KKGDLI 126 (388)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCcccCCcHH----HHHHHHHHHHHhCCCcE---EEEcccch-hHHHHHHHhc-CCCcEE
Confidence 4477777776665333333332 555566 89999999999999753 88888886 8999999998 8899 6
Q ss_pred EEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~ 231 (815)
+....+|.|++...++.+.. .+....+ |.+.+++.|++-..... +.++|++..+.++.|.+.|+++|.++++
T Consensus 127 ~~D~lnHASiidG~rls~a~-~~~f~Hn---D~~~Le~~l~~~~~~~~-~~~~IvtegVfSMdGdiApL~~l~~L~~--- 198 (388)
T COG0156 127 FSDELNHASIIDGIRLSRAE-VRRFKHN---DLDHLEALLEEARENGA-RRKLIVTEGVFSMDGDIAPLPELVELAE--- 198 (388)
T ss_pred EEechhhhhHHHHHHhCCCc-EEEecCC---CHHHHHHHHHhhhccCC-CceEEEEeccccCCCCcCCHHHHHHHHH---
Confidence 66668999988766655433 3333333 33455554431111111 5799999999999999999999999999
Q ss_pred cccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccC
Q psy16512 232 FKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 232 ~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~ 302 (815)
+|+++++||.+|++|..-. .+....+|+++.|++|.|| -.| |++..+..+.+.+...-
T Consensus 199 --------ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~G-g~v~g~~~~~d~L~~~a--- 265 (388)
T COG0156 199 --------KYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSG-GYIAGSAALIDYLRNRA--- 265 (388)
T ss_pred --------HhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccC-ceeeCcHHHHHHHHHhC---
Confidence 9999999999999986432 2222245899999999999 333 67777776665442110
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.....+.+++.....++.++++.+.+.....++.+++..++...++.. ++.+.
T Consensus 266 -------------------r~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~-------~~~~~- 318 (388)
T COG0156 266 -------------------RPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL-------GLVLL- 318 (388)
T ss_pred -------------------CceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-------CCccC-
Confidence 001223356667777788899988876556688889999888666654 44432
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~ 462 (815)
+. ..+|+.+.+.+.... ..+...|.+.||.+....+...+..
T Consensus 319 ~s-------~s~I~pv~~gd~~~a----~~~s~~l~~~Gi~v~~i~~PTVp~g--------------------------- 360 (388)
T COG0156 319 PS-------ESPIIPVILGDEERA----LEASRALLEEGIYVSAIRPPTVPKG--------------------------- 360 (388)
T ss_pred CC-------CCCeeeeEeCCHHHH----HHHHHHHHHCCeeEeeecCCCCCCC---------------------------
Confidence 22 268888887764322 2356666666999987655443321
Q ss_pred cCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 463 ~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+|+++...+|++||++++++|.++
T Consensus 361 -----tarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 361 -----TARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred -----cceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 367999999999999999999999874
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=202.68 Aligned_cols=322 Identities=11% Similarity=0.068 Sum_probs=206.6
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CCC
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEG 149 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~g 149 (815)
..+++.+++.+++.....+..++. ...... ..++++++++++|.+. .+++++| ++|+..++.++.. .+|
T Consensus 60 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~----~~~le~~la~~~g~~~---~~~~~SG-~~An~~ai~~l~~~~~g 131 (406)
T PRK13393 60 QHPAVLAAMHEALDTCGAGAGGTRNISGTNHY----HVLLEAELADLHGKEA---ALLFTSG-YVSNWAALSTLGSRLPG 131 (406)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccccccCChHH----HHHHHHHHHHHhCCCc---EEEeCCc-HHHHHHHHHHhhcCCCC
Confidence 357788888777764322111111 111223 7889999999999732 2555555 5688888887652 267
Q ss_pred c-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhc-CCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENM-RHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~-~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
+ ++....+|+++.......+.. ...+... +.+.+++.++ .. .+++++|++++++|++|.+.|+++|.++|
T Consensus 132 ~~I~~~~~~H~s~~~~~~~~g~~-~~~~~~~---d~~~l~~~l~----~~~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~ 203 (406)
T PRK13393 132 CVILSDELNHASMIEGIRHSRAE-KRIFRHN---DPADLERKLS----DLDPHRPKLVAFESVYSMDGDIAPIAEICDVA 203 (406)
T ss_pred CEEEEccchhHHHHHHHHHcCCe-EEEeCCC---CHHHHHHHHH----hccCCCCEEEEEcCCCCCCCchhCHHHHHHHH
Confidence 8 555567898877654443221 2222211 2233333222 12 23578999999999999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCC-CCC-----CC--CCCCcEEEEccccccccCCcceEEEEecccccccCccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLD-----LK--QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~d-----l~--~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~ 299 (815)
+ ++|+++++|++|+.|.. +.. .. ...+|+++.|++|.||. .| |+++.++++++.++...
T Consensus 204 ~-----------~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~G-G~~~~~~~~~~~l~~~~ 270 (406)
T PRK13393 204 E-----------KHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MG-GYITGSAALCDFIRSFA 270 (406)
T ss_pred H-----------HcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cC-ceeeCCHHHHHHHHHhC
Confidence 9 89999999999986541 110 00 11358888999999994 45 78877776655442211
Q ss_pred ccCceEEEEecCCcccccccCccccc-cCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKF-EDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
..+ ..++.+....+++.++++.+.......++..++++++.+.|+++ ++
T Consensus 271 -----------------------~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~ 320 (406)
T PRK13393 271 -----------------------SGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKA-------GI 320 (406)
T ss_pred -----------------------cCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHc-------CC
Confidence 111 13456667777788888887665433466778889999999876 44
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
.++.+ .++++.+.+.+. .....+.+.|.+ +||.++.+.+...+
T Consensus 321 ~~~~~--------~~~i~~v~~~~~----~~~~~l~~~L~~~~Gi~v~~~~~p~~p------------------------ 364 (406)
T PRK13393 321 PHLPN--------PSHIVPVMVGDP----VLCKQISDELLDRYGIYVQPINYPTVP------------------------ 364 (406)
T ss_pred CcCCC--------CCCeEEEEeCCH----HHHHHHHHHHHHhCCEEEEeECCCCCC------------------------
Confidence 44422 256777655321 112346666655 69999875321110
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+.||+|++.++|++|+++++++|++++.+
T Consensus 365 --------~g~~~iRis~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 365 --------RGTERLRITPSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred --------CCCceEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 01267999999999999999999999997643
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=203.86 Aligned_cols=306 Identities=14% Similarity=0.099 Sum_probs=195.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+.+++++++++|.+. .++++++++|+.+++ .+. ++|| ||++...|+++..+. ..+...| ...++. .
T Consensus 135 ~~aLE~~lA~leg~e~----ai~~~SG~aAi~~il-~ll-~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~---~ 205 (464)
T PLN02509 135 RDALESLLAKLDKADR----AFCFTSGMAALSAVT-HLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT---T 205 (464)
T ss_pred HHHHHHHHHHHhCCCE----EEEeCcHHHHHHHHH-HHh-CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCC---C
Confidence 7889999999998643 455566678887666 454 8999 888888887765433 3444556 333332 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 206 d~e~l~~-------ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk-----------~~g~~lIVD~A~a~~~~~~pl-~ 266 (464)
T PLN02509 206 NLDEVAA-------AIGPQTKLVWLESPTNPRQQISDIRKIAEMAH-----------AQGALVLVDNSIMSPVLSRPL-E 266 (464)
T ss_pred CHHHHHH-------hCCcCCeEEEEECCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEECCccccccCChh-h
Confidence 3344443 34578999999999999999999999999999 899999999999888654333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|++++|++|+++++.+ .|+++++++.. +.++... ....+.++....+.+.
T Consensus 267 ~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~------------------------~~~g~~l~p~~A~l~l 322 (464)
T PLN02509 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ------------------------NSEGSGLAPFDCWLCL 322 (464)
T ss_pred cCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHH------------------------HhcCCCcCHHHHHHHH
Confidence 5899999999999997766 57777665432 2221100 0111123333334344
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++. +...+++..+.+.++.+.|++. |.+ +++-|.-.+ .....+++++|.+.+ .+.
T Consensus 323 r~L~t---L~~R~~r~~~nA~~la~~L~~~------p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~--~~~-- 389 (464)
T PLN02509 323 RGIKT---MALRIEKQQENARKIAMYLSSH------PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS--VAL-- 389 (464)
T ss_pred hhhhh---HHHHHHHHHHHHHHHHHHHhcC------CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCC--HHH--
Confidence 44444 3345588889999999999877 554 333332101 012458899998822 111
Q ss_pred HHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|.-..+.++.|... .++....+.+++++..... |..++.||+|+|..+ ++.
T Consensus 390 ~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~~~---------------Gi~~~liRlSvGlE~----~~D 450 (464)
T PLN02509 390 SKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREAR---------------GLTEDLVRISAGIED----VDD 450 (464)
T ss_pred HHHHHHcCCcceEcccCCCCCceeeCCcccccccCCHHHHHhc---------------CCCCCeEEEEeccCC----HHH
Confidence 124556666666667666422 2333334555655443322 556799999999754 555
Q ss_pred HHHHHHHHHh
Q psy16512 487 FLSFLNQYFL 496 (815)
Q Consensus 487 lv~~L~~~~~ 496 (815)
|++-|++.+.
T Consensus 451 Li~Dl~~Al~ 460 (464)
T PLN02509 451 LISDLDIAFR 460 (464)
T ss_pred HHHHHHHHHc
Confidence 5555555443
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=200.55 Aligned_cols=307 Identities=12% Similarity=0.069 Sum_probs=191.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
...++++++++.|++.. +++ ++++.|+.+++. +. ++|| ||++...|++... +...+...| ...++. .
T Consensus 52 ~~~Le~~la~l~g~~~a---l~~-~SG~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~---~ 122 (380)
T PRK06176 52 RFALEELIADLEGGVKG---FAF-ASGLAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT---S 122 (380)
T ss_pred HHHHHHHHHHHhCCCCE---EEE-CCHHHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC---C
Confidence 88999999999997642 555 555679987664 54 8999 8888877876544 444555566 333332 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+....++ .
T Consensus 123 d~e~l~~-------ai~~~t~lV~lesP~Nptg~~~di~~I~~la~-----------~~gi~vivD~t~a~~~~~~p~-~ 183 (380)
T PRK06176 123 DLSQIKK-------AIKPNTKALYLETPSNPLLKITDLAQCASVAK-----------DHGLLTIVDNTFATPYYQNPL-L 183 (380)
T ss_pred CHHHHHH-------hcCcCceEEEEECCCCCCceecCHHHHHHHHH-----------HcCCEEEEECCccccccCCcc-c
Confidence 4444444 33568999999999999999999999999999 899999999998876543333 5
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|++++|++|++++|.+ .|+++.++ ++.++++... .......+....+.+.
T Consensus 184 ~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~------------------------~~~G~~~~~~~~~l~~ 239 (380)
T PRK06176 184 LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQ------------------------NAIGGVLGPQDSWLLQ 239 (380)
T ss_pred cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHH------------------------HHhcCCCCHHHHHHHH
Confidence 6899999999999997754 46566654 3333332111 0101122222222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+ ..++++..+.+..+.+.|++. |.+ +++.|...+ .....+++++|.+.+. +.
T Consensus 240 ~gl~tl---~~R~~~~~~~a~~la~~L~~~------p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~--~~-- 306 (380)
T PRK06176 240 RGIKTL---GLRMEAHQKNALCVAEFLEKH------PKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND--SE-- 306 (380)
T ss_pred hccCcH---HHHHHHHHHHHHHHHHHHHhC------CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH--HH--
Confidence 333222 223355566677777777766 343 233332111 0124589999999642 11
Q ss_pred HHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|....+.++.|... .++....+..++++..... |.+++.||+|+|..+.++-|+.
T Consensus 307 ~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dli~d 371 (380)
T PRK06176 307 AVAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKEQREAA---------------GIRDGLVRLSVGIEHEQDLLED 371 (380)
T ss_pred HHHHHHcCCcceEccCCCCCCceeeCCcccccccCCHHHHHhc---------------CCCcCeEEEEeccCCHHHHHHH
Confidence 124566666666666666432 2333334455555443322 5667899999998766555666
Q ss_pred HHHHHHH
Q psy16512 487 FLSFLNQ 493 (815)
Q Consensus 487 lv~~L~~ 493 (815)
|.++|++
T Consensus 372 l~~Al~~ 378 (380)
T PRK06176 372 LEQAFAK 378 (380)
T ss_pred HHHHHhh
Confidence 6666653
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=203.39 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=188.6
Q ss_pred HHHHHHHHHhHcCCCCCce-eEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhh
Q psy16512 107 IDQMRTKILQYFNTDSDHY-SVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~-~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~ 182 (815)
.+.+.+.+.+++|.+.+.. +|++|+|+++|+.+++.++. .+|| |++..+.|+++..+.+.++... .++++.+ ...
T Consensus 73 r~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~-~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~ 151 (386)
T PRK09082 73 REAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALV-RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRV 151 (386)
T ss_pred HHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHHc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccC
Confidence 3445555555677653211 39999999999999999997 8999 8888888888766665543322 5555432 345
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NML 258 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~ 258 (815)
+++.+++++ .++++++++++++||||..++.+++.++++ .|+++++++|+|+++.... ...
T Consensus 152 d~~~l~~~~-------~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~--------~a~~~~i~li~De~y~~~~~~~~~~~ 216 (386)
T PRK09082 152 DWQRFAAAI-------SPRTRLIILNTPHNPSGTVWSAADMRALWQ--------LIAGTDIYVLSDEVYEHIVFDGAGHA 216 (386)
T ss_pred CHHHHHHhc-------CccceEEEEeCCCCCCCcCCCHHHHHHHHH--------HHHHCCEEEEEehhhhhhccCCCCCC
Confidence 556655533 467899999999999999987666544444 3338999999999864211 111
Q ss_pred ---CCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 259 ---DLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 259 ---dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
.+.. .+..+++.||+|.|| .+| +||++.++++++.++... .....+.+.
T Consensus 217 s~~~~~~~~~~~i~~~S~SK~~~-~~G~RiG~iv~~~~l~~~~~~~~------------------------~~~~~~~~~ 271 (386)
T PRK09082 217 SVLRHPELRERAFVVSSFGKTYH-VTGWKVGYCVAPAALSAEFRKVH------------------------QYNTFTVNT 271 (386)
T ss_pred ChhhCcCccCcEEEEeechhhcc-chhhhhhhhhCCHHHHHHHHHHH------------------------hhhcCCCCh
Confidence 1111 234588889999998 557 799999887766553221 111223454
Q ss_pred hHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 333 LAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
....++...++......... +.+++.++++.+.|++. ++++..+.+ +.++++.++...+ .+..
T Consensus 272 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~g-------~~~~~~~~~~~~~--~~~~ 335 (386)
T PRK09082 272 PAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALANS-------RFKLLPCEG-------TYFQLVDYSAISD--LDDV 335 (386)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCe-------eEEEEEeccccCC--CCHH
Confidence 55555544443111111112 55677788888888775 566554432 4566667753211 2233
Q ss_pred HHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 412 EVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 412 ~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
++.+. +.++||.+.+|..+... +...+++|++++. ++++++..++.
T Consensus 336 ~~~~~l~~~~~v~v~pg~~f~~~-------------------------------~~~~~~~Ri~~~~--~~~~l~~~~~r 382 (386)
T PRK09082 336 EFCQWLTREHGVAAIPLSVFYAD-------------------------------PFPHRLVRLCFAK--QEETLDAAAER 382 (386)
T ss_pred HHHHHHHHhCCEEEeCcHHhCCC-------------------------------CCCCCEEEEEecC--CHHHHHHHHHH
Confidence 56665 57889999988643210 0113799999985 67888888888
Q ss_pred HHH
Q psy16512 491 LNQ 493 (815)
Q Consensus 491 L~~ 493 (815)
|++
T Consensus 383 l~~ 385 (386)
T PRK09082 383 LCQ 385 (386)
T ss_pred Hhh
Confidence 764
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=194.37 Aligned_cols=274 Identities=13% Similarity=0.111 Sum_probs=183.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~ 184 (815)
..++|+++++++|.++++ |++|+|+++++.+++.++ .+|++++..+.|..+. ..++..| .+++. ++
T Consensus 49 ~~~lr~~la~~~~~~~~~--i~~t~G~~~~i~~~~~~l--~~g~vl~~~p~y~~~~---~~~~~~g~~~~~~~-----d~ 116 (330)
T TIGR01140 49 YDELRAAAAAYYGLPAAS--VLPVNGAQEAIYLLPRLL--APGRVLVLAPTYSEYA---RAWRAAGHEVVELP-----DL 116 (330)
T ss_pred HHHHHHHHHHHhCCChhh--EEECCCHHHHHHHHHHHh--CCCeEEEeCCCcHHHH---HHHHHcCCEEEEeC-----CH
Confidence 578999999999998777 999999999999987665 5678888776665543 4445556 44443 34
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--- 261 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--- 261 (815)
+.+++. + .+++++++++|+||||.++|.+++.++++ .|+++|+++|+|+++.......++.
T Consensus 117 ~~l~~~-------~-~~~~~v~i~~p~NPtG~~~~~~~~~~l~~--------~a~~~~~~ii~De~y~~~~~~~~~~~~~ 180 (330)
T TIGR01140 117 DRLPAA-------L-EELDVLVLCNPNNPTGRLIPPETLLALAA--------RLRARGGWLVVDEAFIDFTPDASLAPQA 180 (330)
T ss_pred HHHHhh-------c-ccCCEEEEeCCCCCCCCCCCHHHHHHHHH--------HhHhcCCEEEEECcccccCCccchhhHh
Confidence 444432 2 34789999999999999999777666655 3338999999999975332111221
Q ss_pred -CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 -QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 -~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..+.++++.|++|+|| ++| +|+++++++.++.+.+.. ...+.+..+..++
T Consensus 181 ~~~~~~i~~~S~SK~~g-~~G~R~G~i~~~~~~~~~l~~~~--------------------------~~~~~s~~~q~~~ 233 (330)
T TIGR01140 181 ARFPGLVVLRSLTKFFG-LAGLRLGFVVAHPALLARLREAL--------------------------GPWTVNGPARAAG 233 (330)
T ss_pred ccCCCEEEEEecchhhc-CchhhhhheeCCHHHHHHHHhcC--------------------------CCCCchHHHHHHH
Confidence 1245688999999999 557 699999888766553221 1123344444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
...++.........++.+.+++++.+.|+++ +.+++..+ .+.++++.+++ . .++.+.|.
T Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~--------~~~f~~~~~~~--~-----~~l~~~l~ 292 (330)
T TIGR01140 234 RAALADTAWQAATRARLAAERARLAALLARL------GGLEVVGG--------TALFLLVRTPD--A-----AALHEALA 292 (330)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHHHHHHhC------CCceECCC--------CCeEEEEEcCC--H-----HHHHHHHH
Confidence 4444321111111278888899999999887 44555422 25666665542 1 25778888
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
++||.+.+|..+. +...+++|++++. ..++ ++|+++|+
T Consensus 293 ~~gi~v~pg~~f~---------------------------------~~~~~~iRi~~~~--~~~~-~~~~~~l~ 330 (330)
T TIGR01140 293 RRGILIRDFDNFP---------------------------------GLDPRYLRFALPT--DEEN-DRLEEALA 330 (330)
T ss_pred HCCEEEEECCCCC---------------------------------CCCCCEEEEEecC--HHHH-HHHHHhhC
Confidence 8999999987542 1113789999983 3344 88888763
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=203.23 Aligned_cols=334 Identities=13% Similarity=0.073 Sum_probs=210.8
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHH-HHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQ-MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~-~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
..++++.+.+++...+... ..+++++.+.........+++ +++.+++++|++... |++++ +|+|+.+++.++. +
T Consensus 34 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~--i~~~s-gt~al~~~l~~l~-~ 109 (416)
T PRK00011 34 ENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYAN--VQPHS-GSQANAAVYFALL-K 109 (416)
T ss_pred cCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCcee--eecCC-chHHHHHHHHHhc-C
Confidence 3447888888886655322 224444332111111222554 688999999998754 66655 5779999999996 8
Q ss_pred CCc-EEEecCCCcchhhH--HHHhhccc----eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVLGM--RELVKTNQ----IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~--~~~~~~~g----~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |+++..+|+++... .......| .++++. ++.+++++++++++ ..++++|++++. .+|...|
T Consensus 110 ~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~k~v~~~~~--~~~~~~~ 181 (416)
T PRK00011 110 PGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLAL------EHKPKLIIAGAS--AYSRPID 181 (416)
T ss_pred CCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHH------hcCCCEEEECCC--cCCCccC
Confidence 999 88888888765321 11112223 334442 34677777776543 236889888653 4567789
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEe-ccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVK-QKSAH 293 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~ 293 (815)
+++|.++|+ ++|+++++|++|+.|.. +.++. ++|++++|+||++++|.| |+++.+ +++.+
T Consensus 182 ~~~I~~la~-----------~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~ 247 (416)
T PRK00011 182 FKRFREIAD-----------EVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAK 247 (416)
T ss_pred HHHHHHHHH-----------HcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHH
Confidence 999999999 89999999999987653 33343 689999999998876764 777775 46655
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHHHhccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~~L~~l~~ 371 (815)
.++..... ...+++....+.++..++......+ .. .++..++++++.+.|+++
T Consensus 248 ~l~~~~~~-----------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 302 (416)
T PRK00011 248 KINSAVFP-----------------------GIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAER-- 302 (416)
T ss_pred HHHHHhCc-----------------------cccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC--
Confidence 54322110 1112344445555544443332222 22 388899999999999886
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
++++.. .. ..++++++.+.+.. ++...+.+.|.++||.++.+...... ..
T Consensus 303 -----g~~~~~-~~-----~~~~~~~i~~~~~~---~~~~~~~~~L~~~GI~v~~~~~p~~~--~~-------------- 352 (416)
T PRK00011 303 -----GFRVVS-GG-----TDNHLVLVDLRSKG---LTGKEAEAALEEANITVNKNAVPFDP--RS-------------- 352 (416)
T ss_pred -----CCeeee-cC-----CCCeEEEEeCcccC---CCHHHHHHHHHHcCcEEccCcCCCCC--CC--------------
Confidence 566653 11 12477777764321 23345888889999999754321100 00
Q ss_pred cCCccCCcccccCCCCceEEEEeccC----CCCHHHHHHHHHHHHHHHhh
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGH----ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~----~~t~edi~~lv~~L~~~~~~ 497 (815)
......+|++... ..+++|+++++++|++++.+
T Consensus 353 -------------~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 353 -------------PFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred -------------CCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 0112568986533 34699999999999998776
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=199.28 Aligned_cols=299 Identities=13% Similarity=0.111 Sum_probs=187.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcch
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNML 185 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~ 185 (815)
..+++++++++.|.+. ++.++|+++|+.+++. +. ++|| ||++...|.....+.......+.+.++ ...+++
T Consensus 56 ~~~le~~lA~leg~~~----~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~--~~~d~~ 127 (364)
T PRK07269 56 RAKLEETLAAIESADY----ALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFT--YANTEE 127 (364)
T ss_pred HHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHHHhcCcEEEE--ecCCHH
Confidence 8899999999998643 8999999999999885 44 8999 888877665544443332222211111 112344
Q ss_pred hhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCC
Q psy16512 186 NEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP 265 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~ 265 (815)
.+++ +++++|++|++++|+||+|.+.|+++|+++|+ ++|+++++|++++.+....++ ..++
T Consensus 128 ~l~~-------~i~~~TklV~lesP~NPtg~~~di~~I~~la~-----------~~gi~vvvD~t~~~~~~~~pl-~~ga 188 (364)
T PRK07269 128 ELIA-------AIEEDTDIVYIETPTNPLMVEFDIEKVAKLAH-----------AKGAKVIVDNTFYSPIYQRPI-ELGA 188 (364)
T ss_pred HHHH-------hcCcCceEEEEECCCCCCCeeeCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-hhCC
Confidence 4444 34578999999999999999999999999999 899999999998766543333 4689
Q ss_pred cEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
|++++|++|+++++.. .|+++.++ ++.++++... .......+....+.+..+|
T Consensus 189 Divv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~------------------------~~~G~~~s~~~a~l~~~~L 244 (364)
T PRK07269 189 DIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL------------------------NTTGAVLSPFDSYLLMRGL 244 (364)
T ss_pred cEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH------------------------HHhCCCCCHHHHHHHHcCC
Confidence 9999999999996654 46666654 3433332110 0111233333333333344
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK 421 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g 421 (815)
+ .+...+++..+++..+.+.|++. |.+. ++-|. .+++++|.+.+. +. ...+...+....
T Consensus 245 ~---tL~~r~~~~~~na~~~a~~L~~~------p~v~~v~ypg-------~gg~~sf~~~~~--~~--~~~f~~~l~~~~ 304 (364)
T PRK07269 245 K---TLSLRMERSTANAQEVVAFLKKS------PAVKEVLYTG-------KGGMISFKVADE--TR--IPHILNSLKVFT 304 (364)
T ss_pred C---cHHHHHHHHHHHHHHHHHHHHhC------CCccEEeCCC-------cCcEEEEEECCH--HH--HHHHHHhCCcce
Confidence 3 34345578888899999999876 6553 44343 389999998531 11 112445555555
Q ss_pred cEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 422 IQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 422 I~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
+..+.|...+ ++....+.+++.+... . -|..++.||+|+|..+.++-++.|.++|
T Consensus 305 ~~~slG~~~sl~~~p~~~~~~~~~~~~r~-~--------------~Gi~~~liRlsvGlE~~~dli~dl~~al 362 (364)
T PRK07269 305 FAESLGGVESLITYPTTQTHADIPAEVRH-S--------------YGLTDDLLRLSIGIEDARDLIADLKQAL 362 (364)
T ss_pred EccCCCCcCeEeeCCcccccccCCHHHHH-h--------------cCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 5555553222 1222233344433221 1 1455789999999754444344444433
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=205.24 Aligned_cols=287 Identities=14% Similarity=0.049 Sum_probs=192.4
Q ss_pred HHHHHHHHHhHcCC--C-CCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNT--D-SDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~--~-~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~ 181 (815)
..++|+.++++++. . +++ |++|+|+++|+.++++++. ++|| |++..+.|+.+....+..+... .++++.+ .
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~--Iiit~G~~~al~~~~~~l~-~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-g 198 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFE--IDLTSGAIDAIERLLCAHL-LPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE-G 198 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCe--EEEecCcHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC-C
Confidence 46788888888763 2 334 9999999999999999998 8999 8888877766655444433332 5555544 3
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEe-cccCCCccccChH---HHHHHhhccccccccccCCC-CeEEEEecccccC--
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYP-AESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRS-NCFVLLDAATYCG-- 254 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~-~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~-gi~vivD~a~~~g-- 254 (815)
++++.+++++ ++++++++++ ++|||||..++.+ +|.++|+ ++ ++++|+|+++.--
T Consensus 199 ~~~~~l~~~~-------~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~-----------~~~~~~ii~De~Y~~~~~ 260 (431)
T PRK15481 199 MQPEKLERAL-------AQGARAVILTPRAHNPTGCSLSARRAAALRNLLA-----------RYPQVLVIIDDHFALLSS 260 (431)
T ss_pred CCHHHHHHHH-------hcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHH-----------hcCCceEEecCchhhhcc
Confidence 5666665533 3468888886 9999999999988 5666666 77 9999999886421
Q ss_pred --CC-CCCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 --SN-MLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 --~~-~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
.. .+.. ..+..+++.||+|.|+ | | +||++.++++++.+.... ......
T Consensus 261 ~~~~~~~~~-~~~~vi~~~SfSK~~~-~-GlRiG~~i~~~~~~~~~~~~~------------------------~~~~~~ 313 (431)
T PRK15481 261 SPYHSVIPQ-TTQRWALIRSVSKALG-P-DLRLAFVASDSATSARLRLRL------------------------NSGTQW 313 (431)
T ss_pred CCCCCCCcC-CCCCEEEEeeeccccC-C-CceeEEEeCCHHHHHHHHHHH------------------------hccccC
Confidence 11 1111 1234478889999999 7 7 899999887766553211 001113
Q ss_pred CChhHHHHHHHHHHHHH--h-hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 VNYLAIISLKYGFDTME--K-KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~--~-~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.+...++..+++.-. + +....+.+++.++++.+.|++. ++.+..|.+ +.++++.++. +.
T Consensus 314 ~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-------~~~~~~p~g-------g~f~~~~l~~-~~- 377 (431)
T PRK15481 314 VSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-------GIAIPSPGD-------GLNLWLPLDT-DS- 377 (431)
T ss_pred CCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccccCCC-------eEEEEEECCC-CH-
Confidence 45555555555554211 1 1111266777777888888775 455444433 6777777753 11
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.++.+.|.++||.+.+|..|... + ..+++|+|++.. +++++++
T Consensus 378 ----~~~~~~l~~~gV~v~pg~~f~~~-------------------------------~-~~~~iRis~~~~-~~~~i~~ 420 (431)
T PRK15481 378 ----QATALTLAKSGWLVREGEAFGVS-------------------------------A-PSHGLRITLSTL-NDAEINR 420 (431)
T ss_pred ----HHHHHHHHHCCcEEecCCccccC-------------------------------C-CCCeEEEEcCCC-ChHHHHH
Confidence 24777788899999998754221 0 126899999864 5899999
Q ss_pred HHHHHHHHH
Q psy16512 487 FLSFLNQYF 495 (815)
Q Consensus 487 lv~~L~~~~ 495 (815)
+++.|.+++
T Consensus 421 ~~~~l~~~~ 429 (431)
T PRK15481 421 LAADLHQAL 429 (431)
T ss_pred HHHHHHHHh
Confidence 999998875
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=201.52 Aligned_cols=335 Identities=11% Similarity=0.050 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~ 180 (815)
...+.+++.+++++|++. .++|++|+ .|+.+++.++. ++|| ||++..+|.+... +...+.+.| ...++.
T Consensus 69 pt~~~le~~la~l~g~~~---~v~fsSG~-~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~-- 141 (437)
T PRK05613 69 PTVEALENRIASLEGGVH---AVAFASGQ-AAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVEN-- 141 (437)
T ss_pred hHHHHHHHHHHHHhCCCe---EEEeCCHH-HHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECC--
Confidence 348899999999999842 36666666 78888888886 8999 8888888888643 445566667 333331
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
..+++.+++ .++++|++|++.++.||+|.+.|+++|+++|+ ++|+++++|++++.|... +.
T Consensus 142 ~~d~e~l~~-------~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~-----------~~gi~livD~t~a~g~~~-~p 202 (437)
T PRK05613 142 PDDPESWQA-------AVQPNTKAFFGETFANPQADVLDIPAVAEVAH-----------RNQVPLIVDNTIATAALV-RP 202 (437)
T ss_pred CCCHHHHHH-------hCCccCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCeEEEECCCcccccc-Ch
Confidence 124455554 34578999999999999999999999999999 899999999999888653 33
Q ss_pred CCCCCcEEEEccccccccCC-cceEEEE-ecccccc-------cCcccccCceEE---EEecCC-cccc-cccCcccccc
Q psy16512 261 KQHQPDFISISFYKMFGYPT-GLGALIV-KQKSAHV-------LNKTFYGGGTVK---ISMANE-NFHI-KKDGLFEKFE 326 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~-G~G~l~~-~~~~~~~-------l~~~~~g~~~~~---~~~~~~-~~~~-~~~~~~~~~~ 326 (815)
..+++|++++|+||+++++. ++|.+++ +++..-. +.+......... ...... .... .......+..
T Consensus 203 ~~~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (437)
T PRK05613 203 LELGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDT 282 (437)
T ss_pred HHhCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhc
Confidence 36789999999999999442 3566666 3321100 000000000000 000000 0000 0000001122
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC----------CCcccce
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE----------SKYQGNI 395 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~----------~~~~~~i 395 (815)
.++++....+.+..+++.+. .++++..+.+..+.+.|++. |.+ +++-|...+. ....|++
T Consensus 283 G~~~~p~~a~l~~rgl~TL~---lR~~~~~~nA~~lA~~L~~h------p~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~ 353 (437)
T PRK05613 283 GATLSPFNAWVTAQGLDTLS---LRLERHNENAIKVAEFLNNH------EKVAKVNFAGLKDSPWYATKEKLGLKYTGSV 353 (437)
T ss_pred CCCCCHHHHHHHHcccCcHH---HHHHHHHHHHHHHHHHHHcC------CCcceEECCCCCCCccHHHHHHhcCCCCceE
Confidence 44555555555555555443 24578888888888899887 444 2333321110 1235889
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
++|.+.+. .+. ...+.+.|.-..+.++.|... .++....+..++++...+. |..++.||
T Consensus 354 ~sf~l~~~-~~~--~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~---------------Gi~~~liR 415 (437)
T PRK05613 354 LSFDIKGG-KDE--AWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARA---------------GITQATVR 415 (437)
T ss_pred EEEEecCC-HHH--HHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhc---------------CCCCCeEE
Confidence 99998632 111 123556666666656555322 2222233344444433222 56678999
Q ss_pred EeccCCCCHHHHHHHHHHHH
Q psy16512 473 ISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~ 492 (815)
+|+|..+.++-++.|-++|+
T Consensus 416 lsvGlE~~~dLi~Dl~~Al~ 435 (437)
T PRK05613 416 LSVGIEDIDDIIADLEGGFA 435 (437)
T ss_pred EEeccCCHHHHHHHHHHHHh
Confidence 99998766555666666654
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=201.62 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=186.2
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++++ .++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+....+..+... .++.+.
T Consensus 69 ~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 145 (386)
T PRK07550 69 LPELREAYAAHYSRLYGAAISPEQ--VHITSGCNQAFWAAMVTLA-GAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDE 145 (386)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcce--EEEecCcHHHHHHHHHHhc-CCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCC
Confidence 5567777776653 45555 9999999999999999997 8999 8888877766644433222111 455543
Q ss_pred hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 179 DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 179 ~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+. ..+.+.+++++ ++++++|++++++||||.++|.+ +|.++|+ ++|+++|+|++++.
T Consensus 146 ~~~~~~~~~~l~~~~-------~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~-----------~~~~~iI~Dd~y~~ 207 (386)
T PRK07550 146 GPGLLPDPAAAEALI-------TPRTRAIALVTPNNPTGVVYPPELLHELYDLAR-----------RHGIALILDETYRD 207 (386)
T ss_pred CcCCCCCHHHHHHHh-------cccCcEEEEeCCCCCCCcccCHHHHHHHHHHHH-----------HcCeEEEEeccchh
Confidence 22 23555555433 35789999999999999999955 4555666 89999999998642
Q ss_pred CC----CCCCCC---CC-CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 254 GS----NMLDLK---QH-QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 254 g~----~~~dl~---~~-~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
.. .+..+. .. ...+++.|++|.|| .+| +|+++.+++.++.+.....
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~RiG~i~~~~~~~~~~~~~~~----------------------- 263 (386)
T PRK07550 208 FDSGGGAPHDLFADPDWDDTLVHLYSFSKSYA-LTGHRVGAVVASPARIAEIEKFMD----------------------- 263 (386)
T ss_pred hccCCCCCcchhhCCCccccEEEEecchhhcc-CcccceEeeecCHHHHHHHHHHHh-----------------------
Confidence 11 111111 11 12467889999998 446 8999998877655532210
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
....+++..+..++..+++.+.+.-... ++..+.++++.+.|... +++.+. +.+ +.++++.++.
T Consensus 264 -~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~-~~g-------~~~~~~~~~~ 328 (386)
T PRK07550 264 -TVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFARL------PGWELL-ASG-------AYFAYVRHPF 328 (386)
T ss_pred -hcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC------CCceeC-CCc-------eEEEEecCCC
Confidence 1112344455555556655433322222 66677778888888775 345443 221 5566666653
Q ss_pred CCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 403 KDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 403 ~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
. ..+..++... +.++||.+.+|..+... ..+++||+++. .++
T Consensus 329 ~---~~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~-~~~ 371 (386)
T PRK07550 329 P---DRPSREVARRLAKEAGILCLPGTMFGPG---------------------------------QEGYLRLAFAN-ADV 371 (386)
T ss_pred C---CCCHHHHHHHHHHhcCEEEeCchhhCCC---------------------------------CCCEEEEEeec-CCH
Confidence 1 1223346665 46789999988654210 13789999974 358
Q ss_pred HHHHHHHHHHHHH
Q psy16512 482 DDVKYFLSFLNQY 494 (815)
Q Consensus 482 edi~~lv~~L~~~ 494 (815)
++++.+++.|.++
T Consensus 372 ~~~~~~~~~l~~~ 384 (386)
T PRK07550 372 AGIGELVERLRAF 384 (386)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998774
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=201.20 Aligned_cols=296 Identities=10% Similarity=0.076 Sum_probs=181.7
Q ss_pred HHHHHHHHHhHc----C----CCCCceeEEecCCchhhHHHHHhhhccCCCc---EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 107 IDQMRTKILQYF----N----TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS---FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~----g----~~~~~~~iv~t~g~t~al~~~~~al~~~~gd---vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
..++|+.+++++ | +++++ +|++|+|+++|+.+++.++. ++|| |+++.+.|+.+.......+... .+
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~~~~-~i~it~Ga~~al~~~~~~l~-~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v 143 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVDPER-HVLPVNGTREALFAFAQAVI-NPGQAPLVVMPNPFYQIYEGAALLAGAEPYFL 143 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCCCCc-eEEECCCcHHHHHHHHHHHc-CCCCcceEEecCCCCcchHHHHHhcCCeEEEe
Confidence 567788888877 3 45531 39999999999999999998 8887 6677766666554433332222 55
Q ss_pred EcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 175 SFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 175 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
+++.++ ..+.+.+++++ .++++++++++++||||.+++.+++.++++ .|++++++||+|+++.
T Consensus 144 ~~~~~~~~~~d~~~l~~~~-------~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y~ 208 (393)
T TIGR03538 144 NCTAENGFLPDFDAVPESV-------WRRCQLLFVCSPGNPTGAVLSLDTLKKLIE--------LADQYGFIIASDECYS 208 (393)
T ss_pred eccccCCCCCCHHHHHHHH-------hhcceEEEEeCCCCCcCcccCHHHHHHHHH--------HHHHCCEEEEECcchh
Confidence 554443 34555555432 247899999999999999999766655554 3338999999999865
Q ss_pred cCC-----CCCCC----C-----CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccc
Q psy16512 253 CGS-----NMLDL----K-----QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 253 ~g~-----~~~dl----~-----~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.-. .+... . ....-+++.|++|.|+ .+| +||++.++++++.+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~-~~GlRvG~~i~~~~l~~~~~~~~----------------- 270 (393)
T TIGR03538 209 ELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSN-LPGLRSGFVAGDAEILKAFLRYR----------------- 270 (393)
T ss_pred hcccCCCCCCcCHHHhcccccccccccEEEEecchhhcC-CcccceEEEecCHHHHHHHHHHH-----------------
Confidence 221 11110 0 1122378889999888 447 899999887765543211
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
.....+.+.....++..++..-..+....++.++.++.+.+.|++. +.+..+. .+.++
T Consensus 271 -------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~--------~~~~~p~-------gg~f~ 328 (393)
T TIGR03538 271 -------TYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAAVLEILGQV--------LDLELPD-------AGFYL 328 (393)
T ss_pred -------HhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhh--------CcccCCC-------eeEEE
Confidence 0111233444444444444221111111255566666777777653 2222333 26777
Q ss_pred EEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 397 NFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 397 ~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
++.++ .+. .++.+.| .++||.+.+|..+..... + .....+++|||+
T Consensus 329 ~~~~~-~~~-----~~~~~~l~~~~gV~v~pg~~f~~~~~----~-----------------------~~~~~~~~Ris~ 375 (393)
T TIGR03538 329 WPKVP-GDD-----EAFARALYEEENVTVLPGRFLAREAE----G-----------------------VNPGEGRVRIAL 375 (393)
T ss_pred EEECC-CCH-----HHHHHHHHHHCCEEEeCCcccccccc----C-----------------------CCCCCCEEEEEe
Confidence 77776 121 2355554 678999999976532100 0 001137999999
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q psy16512 476 GHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~ 494 (815)
+. ++++++.+++.|.++
T Consensus 376 ~~--~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 376 VA--PLEECVEAAERIRSF 392 (393)
T ss_pred cC--CHHHHHHHHHHHHHh
Confidence 75 688899999888764
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=199.85 Aligned_cols=291 Identities=9% Similarity=0.065 Sum_probs=183.2
Q ss_pred HHHHHHHHHhHc----C--CCCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N--TDSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+++++++ | ++++ + |++|+|+++++..++.++. ++|| |++..+.|+.+....+..+... .++++
T Consensus 72 ~~~lr~aia~~~~~~~g~~~~~~~~--i~it~G~~~~l~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 148 (389)
T PRK08068 72 YPFLKEAAADFYKREYGVTLDPETE--VAILFGGKAGLVELPQCLM-NPGDTILVPDPGYPDYLSGVALARAQFETMPLI 148 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCcc--EEEcCCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHhcCCEEEEeecc
Confidence 567888888876 5 4555 4 9999999999999999988 8999 8898888877765554433222 55665
Q ss_pred chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--
Q psy16512 178 VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-- 253 (815)
Q Consensus 178 ~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-- 253 (815)
.+. ..+.++++++ +.+++++|++++|+||||.+++.+++.++++ .|+++++++|+|+++..
T Consensus 149 ~~~~~~~d~~~l~~~-------~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~--------la~~~~~~ii~Deay~~~~ 213 (389)
T PRK08068 149 AENNFLPDYTKIPEE-------VAEKAKLMYLNYPNNPTGAVATKAFFEETVA--------FAKKHNIGVVHDFAYGAIG 213 (389)
T ss_pred cccCCCCCHHHHHHh-------ccccceEEEEECCCCCCCCcCCHHHHHHHHH--------HHHHcCeEEEEehhhhhhc
Confidence 432 2344555442 2356899999999999999999887666554 33389999999998642
Q ss_pred --CCCCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 254 --GSNMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 254 --g~~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
+..+..+.. .+..+++.||+|.|| .+| +||++.++++++.+..... .+
T Consensus 214 ~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~l~~~~~-----------------------~~ 269 (389)
T PRK08068 214 FDGQKPVSFLQTPGAKDVGIELYTLSKTFN-MAGWRVAFAVGNESVIEAINLLQD-----------------------HL 269 (389)
T ss_pred cCCCCCcChhhCCCccCCEEEEecchhccC-CccceeEeEecCHHHHHHHHHHHh-----------------------hc
Confidence 111112111 124588899999998 557 8999998887765532210 01
Q ss_pred cCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 326 EDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
..++++. ...++..++..... .....+++.+.++++.+.|+++ ++.+..+.+ +.++++.++..
T Consensus 270 ~~~~~~~-~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~~-------g~~~~~~~g-------~~~~~v~~~~~- 333 (389)
T PRK08068 270 FVSLFGA-IQDAAIEALLSDQSCVAELVARYESRRNAFISACREI-------GWEVDAPKG-------SFFAWMPVPKG- 333 (389)
T ss_pred cCCCChH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCe-------eEEEEEECCCC-
Confidence 1122222 22222233321111 1111266777788888888776 455554432 44567777532
Q ss_pred CCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 405 GTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 405 ~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
++..++.+.|. ++||.+++|..+.. ...+++||+++. +++.
T Consensus 334 ---~~~~~~~~~l~~~~gi~v~pg~~f~~---------------------------------~~~~~iRi~~~~--~~~~ 375 (389)
T PRK08068 334 ---YTSEQFADLLLEKAHVAVAPGNGFGE---------------------------------HGEGYVRVGLLT--DEER 375 (389)
T ss_pred ---CCHHHHHHHHHHhCCEEEecchHhCc---------------------------------cCCCeEEEEEcC--CHHH
Confidence 12234666665 57999998864321 013789999973 4555
Q ss_pred HHHHHHHHHH
Q psy16512 484 VKYFLSFLNQ 493 (815)
Q Consensus 484 i~~lv~~L~~ 493 (815)
+...++.|.+
T Consensus 376 l~~al~~l~~ 385 (389)
T PRK08068 376 LREAVERIGK 385 (389)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=198.07 Aligned_cols=322 Identities=13% Similarity=0.074 Sum_probs=200.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~ 183 (815)
..++++.+++++|.+ + +++++|+|+|+..++.++...+|| |+++..+|.++.......+... .++++. ...++
T Consensus 20 ~~~~~~~la~~~~~~--~--~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 95 (352)
T cd00616 20 VREFEKAFAEYLGVK--Y--AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDTYNID 95 (352)
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCcCCcC
Confidence 889999999999963 3 788889999999999998547888 8888888888765444332222 556654 34456
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC-C
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK-Q 262 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~-~ 262 (815)
++.++++ +++++++|++++ ++|...|+++|.++|+ ++|+++|+|++|+.|....+.. .
T Consensus 96 ~~~l~~~-------i~~~~~~v~~~~---~~G~~~~~~~i~~l~~-----------~~~i~li~D~a~~~g~~~~~~~~~ 154 (352)
T cd00616 96 PELIEAA-------ITPRTKAIIPVH---LYGNPADMDAIMAIAK-----------RHGLPVIEDAAQALGATYKGRKVG 154 (352)
T ss_pred HHHHHHh-------cCcCCeEEEEEC---CCCCcCCHHHHHHHHH-----------HcCCeEEEECCCCCCCeECCEEcc
Confidence 6666553 346789998864 6899999999999999 8999999999999887533210 1
Q ss_pred CCCcEEEEccc--cccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFY--KMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~--K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
...|+.++|+| |+++++. .|+++.++ ++.+++++....+..... ..+ ......+..+..++...+++
T Consensus 155 ~~~d~~~~S~~~~K~~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~aa~~~- 224 (352)
T cd00616 155 TFGDAGAFSFHPTKNLTTGE-GGAVVTNDEELAERARLLRNHGRDRDR----FKY----EHEILGYNYRLSEIQAAIGL- 224 (352)
T ss_pred cCcceeEEcCCCCCCCcccC-ceEEEECCHHHHHHHHHHHHcCCCCCC----Ccc----ccceeeeccCcCHHHHHHHH-
Confidence 12588899977 9986443 46677764 555555433222211000 000 00000111222222222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
..+..+....++.+++++++.+.|.++ ++++++.+... .....+++.|.+.+.. ..+..++.+.|.+
T Consensus 225 ---~~l~~~~~~~~~~~~~~~~~~~~L~~~------~g~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~v~~~L~~ 291 (352)
T cd00616 225 ---AQLEKLDEIIARRREIAERYKELLADL------PGIRLPDVPPG--VKHSYHLYVIRLDPEA--GESRDELIEALKE 291 (352)
T ss_pred ---HHHHhhHHHHHHHHHHHHHHHHHhcCC------CCccCCCCCCC--CceeeEEEEEEECCcC--CCCHHHHHHHHHH
Confidence 222222222377788999999999987 78888765320 0123567788776311 1344568999999
Q ss_pred CCcEeccCccCCchhhhhhc----CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 420 KKIQLRTGCHCNPGSCQRFL----GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~----g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+||.++ .+|.+....... +... +.....+....+.+|++++.++|++||++++++|+
T Consensus 292 ~gI~~~--~~~~~~~~~~~~~~~~~~~~--------------~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 292 AGIETR--VHYPPLHHQPPYKKLLGYPP--------------GDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred CCCCee--eecCccccCHhhhhccCCCc--------------CCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 999665 345443222100 0000 00000011123789999999999999999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=198.60 Aligned_cols=296 Identities=12% Similarity=0.031 Sum_probs=187.0
Q ss_pred HHHHHHHHHhH----cCCC--CCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQY----FNTD--SDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~----~g~~--~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.++++ +|.+ ++ .+|++|+|+++|+.+++.++. .+|| |++....|+.+..+....+... .+++++
T Consensus 63 ~~~lr~~ia~~~~~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~ 140 (387)
T PRK07777 63 IPELRAAIAAQRRRRYGLEYDPD-TEVLVTVGATEAIAAAVLGLV-EPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVP 140 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCC-CcEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCC
Confidence 55666666664 5654 33 139999999999999999987 8998 8888888877655554443332 455554
Q ss_pred h---hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 179 D---DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 179 ~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
+ ..++++.++++ +.+++++|++++++||||..++.++ |.++|+ ++++++|+|+++.
T Consensus 141 ~~~~~~~d~~~l~~~-------~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~-----------~~~~~li~De~y~ 202 (387)
T PRK07777 141 DGRGFALDLDALRAA-------VTPRTRALIVNSPHNPTGTVLTAAELAAIAELAV-----------EHDLLVITDEVYE 202 (387)
T ss_pred ccCCCcCCHHHHHHh-------cCcccEEEEEcCCCCCCCccCCHHHHHHHHHHHH-----------hcCcEEEEeccch
Confidence 3 23566666543 3457899999999999999998555 555565 8999999998865
Q ss_pred c----CCCCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 253 C----GSNMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 253 ~----g~~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
. +.....+.. .+.++++.|+||.|| .+| +||+++++++++.+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~l~~~~~~~~----------------------- 258 (387)
T PRK07777 203 HLVFDGARHLPLATLPGMRERTVTISSAAKTFN-VTGWKIGWACGPAPLIAAVRAAK----------------------- 258 (387)
T ss_pred hcccCCCCcccHhhCCCCcCcEEEEeechhhcc-CcCceeEEEecCHHHHHHHHHHH-----------------------
Confidence 3 211112211 235788999999999 447 799999887765543211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
.....+.+.+...++..++......-... +++.+.++++.+.|+++ +++++.+.+ +.++++.++
T Consensus 259 -~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~g-------~~~~~~~~~ 323 (387)
T PRK07777 259 -QYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAEA-------GFEVHDSAG-------TYFLCADPR 323 (387)
T ss_pred -hhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHhC-------CCCccCCCc-------ceEEEeccc
Confidence 00011122233333334443211111122 67778888888888875 455554432 445555654
Q ss_pred cCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.... .+..++.+.| .++||.+.+|..+.... ....+++|++++. +
T Consensus 324 ~~~~--~~~~~~~~~l~~~~gv~v~pg~~f~~~~------------------------------~~~~~~~Ri~~~~--~ 369 (387)
T PRK07777 324 PLGY--DDGTEFCRALPERVGVAAIPMSVFYDPA------------------------------DAWNHLVRFAFCK--R 369 (387)
T ss_pred ccCC--CCHHHHHHHHHHhCCEEEeCchHhCCCC------------------------------cCCCCeEEEEecC--C
Confidence 2111 1223466666 57899999886543210 0113689999984 6
Q ss_pred HHHHHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLNQYF 495 (815)
Q Consensus 481 ~edi~~lv~~L~~~~ 495 (815)
+++++..++.|.++.
T Consensus 370 ~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 370 DDTLDEAIRRLRALR 384 (387)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999988754
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=205.54 Aligned_cols=304 Identities=14% Similarity=0.129 Sum_probs=190.0
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccc-eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g-~v~ 175 (815)
..++|+.|+++++ +++++ |++|+|+++|+.+++.++. .||| |++..+.|+.+...... .+... .++
T Consensus 96 ~~~LR~aiA~~l~~~~g~~v~v~pe~--Ivit~Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~ 172 (496)
T PLN02376 96 LKKFRQAIAHFMGKARGGKVTFDPER--VVMSGGATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVP 172 (496)
T ss_pred cHHHHHHHHHHHHHHhCCCCcCChhh--EEEccchHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHHhhCCCEEEEEe
Confidence 5678888888775 66776 9999999999999999998 9999 88888888877553332 22111 455
Q ss_pred cCc--hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSV--DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++. +..++++.+++++... .....+++++++++|+||||.+++.+++.++++ +|+++++++|+|++++.
T Consensus 173 ~~~~~~~~~~~~~le~a~~~a-~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~--------~a~~~~i~lI~DEiY~~ 243 (496)
T PLN02376 173 CSSSDNFKLTVDAADWAYKKA-QESNKKVKGLILTNPSNPLGTMLDKDTLTNLVR--------FVTRKNIHLVVDEIYAA 243 (496)
T ss_pred CCCCccCcCCHHHHHHHHHHH-HhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHH--------HHHHcCCEEEEEcCccc
Confidence 542 2345666665433210 111346899999999999999999888766665 44489999999998764
Q ss_pred CC----CCCCCCC---------CCCc--EEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCccc
Q psy16512 254 GS----NMLDLKQ---------HQPD--FISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 254 g~----~~~dl~~---------~~~D--~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
-. ...++.. ...+ +++.|++|.|| .+| +||++..++.+ +.++..
T Consensus 244 ~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~g-lpGlRvG~li~~~~~l~~~~~~~----------------- 305 (496)
T PLN02376 244 TVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMG-LPGFRVGIVYSFNDSVVSCARKM----------------- 305 (496)
T ss_pred cccCCCCcccHHHhhccccccccCCCeEEEEEeccccCC-CCcceEEEEEECCHHHHHHHHHH-----------------
Confidence 21 1111110 1123 35689999999 457 89999865433 222110
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHHH---Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
...+..+.....++...++.- .+.-.. .+++.+.++.+.+.|.+. ++.++.+..
T Consensus 306 ---------~~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-------gi~~~~~~a------ 363 (496)
T PLN02376 306 ---------SSFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-------DIACLTSNA------ 363 (496)
T ss_pred ---------hhcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCcccCCCc------
Confidence 011223444445444444321 111111 155566667777777765 555554433
Q ss_pred ccceEEEEEecC-CC-Ccc-CHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 392 QGNIVNFNLLHK-DG-TYY-GYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 392 ~~~i~~f~~~~~-~~-~~~-~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
|.+++++++.. .. ..+ ...++.+. +.+.||.+.+|..|... .
T Consensus 364 -G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~---------------------------------~ 409 (496)
T PLN02376 364 -GLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT---------------------------------E 409 (496)
T ss_pred -eEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC---------------------------------C
Confidence 67788877542 11 111 11234444 45679999999765311 1
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++++||+++.. +++.++..++.|.+++..
T Consensus 410 ~g~~Ri~fa~~-~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 410 PGWFRICFANM-DDDTLHVALGRIQDFVSK 438 (496)
T ss_pred CCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 38999999853 468899999999887753
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=200.38 Aligned_cols=328 Identities=11% Similarity=0.057 Sum_probs=198.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++.|+++.|.+. .++++++++|+.+++.++. ++|| +|+....|...+. +...+...| ...++. .
T Consensus 60 ~~~Le~~lA~l~g~~~----~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~---~ 131 (425)
T PRK06084 60 NDVLEQRVAALEGGVG----ALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH---D 131 (425)
T ss_pred HHHHHHHHHHHhCCCc----eeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC---C
Confidence 7889999999999653 5677788899999999987 8999 8888777765443 222223334 222322 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++++ .++|++|++++++||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 132 d~e~le~ai-------~~~tklV~lesp~NPtG~v~dl~~I~~la~-----------~~~i~vVvD~a~a~~~~~~p~-~ 192 (425)
T PRK06084 132 DIAALEALI-------DERTKAVFCESIGNPAGNIIDIQALADAAH-----------RHGVPLIVDNTVATPVLCRPF-E 192 (425)
T ss_pred CHHHHHHHh-------ccCCcEEEEeCCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-h
Confidence 444555433 467999999999999999999999999999 899999999999877654333 5
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEe-cccc-cccCcc--cccCceEEEEecCCcccccccCc------------cccc
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVK-QKSA-HVLNKT--FYGGGTVKISMANENFHIKKDGL------------FEKF 325 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~-~~~~-~~l~~~--~~g~~~~~~~~~~~~~~~~~~~~------------~~~~ 325 (815)
+++|+++.|++|+++++.. +|.+++. +... ...... ++...... +..... .... ....
T Consensus 193 ~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~g~~~~~~~~~~~~~~~ 267 (425)
T PRK06084 193 HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPS----YHGVTY-TEAFGPAAFIGRCRVVPLRN 267 (425)
T ss_pred cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcc----cccchh-hhhcchHHHHHHHHHHHHHh
Confidence 6899999999999996643 5666664 3210 011000 00000000 000000 0000 0001
Q ss_pred cCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCc-ccc
Q psy16512 326 EDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKY-QGN 394 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~-~~~ 394 (815)
....++....+.+..+ +..+...+++..+.+..+.+.|++. |.++ ++-|...+. ... .++
T Consensus 268 ~g~~l~~~~a~l~lrg---l~tl~~R~~~~~~na~~la~~L~~~------p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg 338 (425)
T PRK06084 268 MGAALSPFNAFLILQG---LETLALRMERHTENALKVARYLQQH------PQVAWVKYAGLPDHPEHELARRYMGGKPAS 338 (425)
T ss_pred cCCCCCHHHHHHHHcC---cCcHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCcccHHHHHHhCCCCcce
Confidence 1223333333333333 3334345588888888899999887 4443 333321110 123 588
Q ss_pred eEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEE
Q psy16512 395 IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSI 471 (815)
Q Consensus 395 i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i 471 (815)
+++|.+.+.. +. ...+.+.|.-..+.++.|... .++....+..++++...+. |.+.+.|
T Consensus 339 ~~s~~~~~~~-~~--~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~---------------gi~~~li 400 (425)
T PRK06084 339 ILSFGIKGGQ-AA--GARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKA---------------GVSRDMV 400 (425)
T ss_pred EEEEEecCCH-HH--HHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhc---------------CCCCCeE
Confidence 9999997421 11 124666777666666666422 2333334445555443222 5667999
Q ss_pred EEeccCCCCHHHHHHHHHHHHH
Q psy16512 472 RISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 472 Rvs~g~~~t~edi~~lv~~L~~ 493 (815)
|||+|..+.++-++.|.++|.+
T Consensus 401 R~svGlEd~~dLi~dl~~Al~~ 422 (425)
T PRK06084 401 RLSIGIEHIDDIIADLAQALDA 422 (425)
T ss_pred EEEeccCCHHHHHHHHHHHHHh
Confidence 9999987666666666666654
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=199.33 Aligned_cols=289 Identities=14% Similarity=0.118 Sum_probs=188.8
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEE
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~ 175 (815)
+.++|+.++++++ +++++ |++|+|+++++.+++.++. .+|| |+++.+.|+.+..+ ++..| .++
T Consensus 75 ~~~lr~~ia~~l~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~-~~gd~Vli~~p~~~~~~~~---~~~~g~~v~~v~ 148 (394)
T PRK06836 75 YPEVREAIAESLNRRFGTPLTADH--IVMTCGAAGALNVALKAIL-NPGDEVIVFAPYFVEYRFY---VDNHGGKLVVVP 148 (394)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCc--EEEeCChHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHH---HHHcCCEEEEEe
Confidence 6778888888874 46666 9999999999999999997 8999 88888776665443 34444 556
Q ss_pred cCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC------CCeEEEEe
Q psy16512 176 FSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR------SNCFVLLD 248 (815)
Q Consensus 176 ~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~------~gi~vivD 248 (815)
++++ ..++++.+++++ .+++++|++++++||||..+|.+++.++++ .|++ |++++++|
T Consensus 149 ~~~~~~~~d~~~l~~~~-------~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~--------la~~~~~~~~~~~~ii~D 213 (394)
T PRK06836 149 TDTDTFQPDLDALEAAI-------TPKTKAVIINSPNNPTGVVYSEETLKALAA--------LLEEKSKEYGRPIYLISD 213 (394)
T ss_pred cCCccCcCCHHHHHhhc-------CcCceEEEEeCCCCCCCcCCCHHHHHHHHH--------HHHHhhhccCCCeEEEEe
Confidence 6554 356677666533 467999999999999999999877666654 2335 89999999
Q ss_pred cccccC----CCCCC-CCCCCCcEEEEccccccccCCc--ceEEEEecccccc--cCcccccCceEEEEecCCccccccc
Q psy16512 249 AATYCG----SNMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHV--LNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 249 ~a~~~g----~~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
+++..- ..... ....+..+++.|++|.||.| | +||++++++..+. +.......
T Consensus 214 e~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p-GlRiG~~~~~~~~~~~~~~~~~~~~~----------------- 275 (394)
T PRK06836 214 EPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLP-GERIGYIAVNPEMEDADDLVAALVFA----------------- 275 (394)
T ss_pred ccccccccCCCCCCChHHccCcEEEEecchhhccCc-ceeeEEEecCHHHhhhHHHHHHHHHH-----------------
Confidence 986521 11111 12234468889999999944 6 8999988765321 10000000
Q ss_pred Ccccccc-CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 320 GLFEKFE-DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 320 ~~~~~~~-~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
.+.. ....+.....++...++. ....+..++.++.+.+.|++. ++++..+.+ +.++++
T Consensus 276 ---~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~r~~l~~~L~~~-------g~~~~~~~g-------g~~~~~ 334 (394)
T PRK06836 276 ---NRILGFVNAPALMQRVVAKCLDA----TVDVSIYKRNRDLLYDGLTEL-------GFECVKPQG-------AFYLFP 334 (394)
T ss_pred ---hhccccccCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHhC-------CCEeecCCc-------eEEEEE
Confidence 0000 012233333333333322 112245666777888888776 566554432 455555
Q ss_pred EEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
.++..+ ..++.+.|.++||.+++|..+.. .+++||+++
T Consensus 335 ~~~~~~-----~~~~~~~l~~~gv~v~~g~~f~~-----------------------------------~~~iRi~~~-- 372 (394)
T PRK06836 335 KSPEED-----DVAFCEKAKKHNLLLVPGSGFGC-----------------------------------PGYFRLSYC-- 372 (394)
T ss_pred eCCCCC-----HHHHHHHHHhCCEEEECchhcCC-----------------------------------CCeEEEEec--
Confidence 555322 23577888899999998754321 278999998
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.++++++..++.|++++.+
T Consensus 373 ~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 373 VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3789999999999987743
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=199.15 Aligned_cols=304 Identities=14% Similarity=0.071 Sum_probs=190.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++.+++++|++.. ++ +++++.|+.+++ ++. ++|| ||++...|++.+. +...+...| ...++. .
T Consensus 52 ~~~Le~~lA~l~g~~~~---~~-~~sG~aai~~~~-~~l-~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~---~ 122 (377)
T PRK07671 52 RAALEELIAVLEGGHAG---FA-FGSGMAAITAVM-MLF-SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT---S 122 (377)
T ss_pred HHHHHHHHHHHhCCCce---EE-eCCHHHHHHHHH-HHh-CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC---C
Confidence 88999999999998642 55 455566887765 454 8899 8888888885544 445555666 334432 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ +++++|++|++++|+||+|.+.|+++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 123 d~~~l~~-------ai~~~tklV~le~P~NPtg~~~dl~~I~~la~-----------~~g~~lvvD~a~~~~~~~~p~-~ 183 (377)
T PRK07671 123 NLEEVEE-------AIRPNTKAIYVETPTNPLLKITDIKKISTIAK-----------EKGLLTIVDNTFMTPYWQSPI-S 183 (377)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCCccccCChh-h
Confidence 4444444 34578999999999999999999999999999 899999999998765432222 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|++++|.+ .|++++++ ++.++++... ....+..+....+.+.
T Consensus 184 ~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~------------------------~~~g~~~~~~~a~l~~ 239 (377)
T PRK07671 184 LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQ------------------------NSTGGILGPQDSWLLL 239 (377)
T ss_pred hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHH------------------------HhhcCCCCHHHHHHHH
Confidence 5789999999999997765 46666654 3444332111 1112333333333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++ .++..+++..+.+..+.+.|++. |.+ .++.|...+ .....+++++|.+. ..+.
T Consensus 240 ~~l~---tl~~R~~~~~~na~~la~~L~~~------~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~--~~~~-- 306 (377)
T PRK07671 240 RGLK---TLGIRMEEHETNSRAIAEFLNNH------PAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVG--SEET-- 306 (377)
T ss_pred cCcC---hHHHHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeC--CHHH--
Confidence 3333 33335577778888888888876 443 233332111 01245889999983 2111
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+...|.-..+.++.|...+ ++....+.+++++..... |..++.||+|+|..+.++-++.
T Consensus 307 ~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~---------------gi~~~liR~svGlE~~~dl~~d 371 (377)
T PRK07671 307 ANKVLERLQYFTLAESLGAVESLISIPSQMTHASIPADRRKEL---------------GITDGLIRISVGIEDGEDLIED 371 (377)
T ss_pred HHHHHHhCCcceEccCCCCCCeEeECCCccccccCCHHHHHhc---------------CCCCCeEEEEeccCCHHHHHHH
Confidence 1235556665566666664322 333334455555443222 5667999999997644433444
Q ss_pred HHHH
Q psy16512 487 FLSF 490 (815)
Q Consensus 487 lv~~ 490 (815)
|-++
T Consensus 372 l~~a 375 (377)
T PRK07671 372 LAQA 375 (377)
T ss_pred HHHH
Confidence 4433
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=198.28 Aligned_cols=317 Identities=13% Similarity=0.062 Sum_probs=197.2
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
++++.+.+++.+.+..... ..+..... ..++|+.++++++. ++++ |++|+|+|+|+.+++.++.
T Consensus 48 ~~~~~~~~~~~~~l~~~~~----~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~--ii~t~G~t~al~~~~~~l~ 117 (403)
T TIGR01265 48 RTDPEAEEAVKDALRSGKF----NGYAPSVG----ALAAREAVAEYLSSDLPGKLTADD--VVLTSGCSQAIEICIEALA 117 (403)
T ss_pred CCCHHHHHHHHHHHhcCCC----CCCCCCCC----CHHHHHHHHHHHHhhcCCCCCHHH--EEEecChHHHHHHHHHHhC
Confidence 3456666666655532211 01111223 67889999999984 4555 9999999999999999998
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++|| |+++..+|+.+.. .+...| .++++.+ ...+++.++++ +.++++++++++++||||.++
T Consensus 118 -~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~-------~~~~~~~v~i~~p~NPtG~~~ 186 (403)
T TIGR01265 118 -NPGANILVPRPGFPLYDT---RAAFSGLEVRLYDLLPEKDWEIDLDGLEAL-------ADEKTVAIVVINPSNPCGSVF 186 (403)
T ss_pred -CCCCEEEEeCCCchhHHH---HHHHcCCEEEEecCCcccCCccCHHHHHHH-------hCcCccEEEEecCCCCCCCCC
Confidence 8999 8888877765433 334444 3344322 24566666543 346789999999999999999
Q ss_pred Ch---HHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCC---CcEEEEccccccccCCc--ceEEE
Q psy16512 219 PL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQ---PDFISISFYKMFGYPTG--LGALI 286 (815)
Q Consensus 219 ~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~---~D~vv~S~~K~~g~p~G--~G~l~ 286 (815)
|. ++|.++|+ ++|+++|+|+++.--. ....+..+. .-+++.||+|.|+.| | +||++
T Consensus 187 ~~~~~~~i~~~a~-----------~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~p-GlRiG~~v 254 (403)
T TIGR01265 187 SRDHLQKIAEVAR-----------KLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVP-GWRLGWII 254 (403)
T ss_pred CHHHHHHHHHHHH-----------HCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCC-cceEEEEE
Confidence 85 45555666 8999999999865221 111222222 236778999998845 7 89999
Q ss_pred Eec--cc-----ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-HHhhhh-hHHHHHH
Q psy16512 287 VKQ--KS-----AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-MEKKRK-SFTNAFE 357 (815)
Q Consensus 287 ~~~--~~-----~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l~~~~~-~~~~~~~ 357 (815)
+.+ +. ++.+.... . ....++.....++..+++. ....-. ..+++.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~------------------------~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~ 309 (403)
T TIGR01265 255 IHDPHGIFRDTVLQGLKNLL------------------------Q-RILGPATIVQGALPDILENTPQEFFDGKISVLKS 309 (403)
T ss_pred EeCchhhhHHHHHHHHHHHh------------------------h-hhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 853 22 11111000 0 0112344555555555542 111111 1256667
Q ss_pred HHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCccCHHHHHHh-hhcCCcEeccCccCCchhh
Q psy16512 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 358 l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~ 435 (815)
.++++.+.|+.+ +++.+..|.+ +.+++++++... ....+..++.+. +.++||.+.+|..+..
T Consensus 310 ~~~~l~~~L~~~------~~~~~~~p~~-------g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--- 373 (403)
T TIGR01265 310 NAELCYEELKDI------PGLVCPKPEG-------AMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL--- 373 (403)
T ss_pred HHHHHHHHHhcC------CCceecCCCc-------eeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC---
Confidence 777888888776 5666554443 678888775321 001122345555 5789999998865421
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++||+++. .++.+++.++.|.+++.
T Consensus 374 --------------------------------~~~iRis~~~--~~~~l~~~l~~l~~~~~ 400 (403)
T TIGR01265 374 --------------------------------PNWVRITITV--PESMLEEACSRIKEFCE 400 (403)
T ss_pred --------------------------------CCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence 3789999984 57788888888887663
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=197.71 Aligned_cols=277 Identities=10% Similarity=0.002 Sum_probs=175.1
Q ss_pred HHHHHHHHHhHc-------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEc
Q psy16512 107 IDQMRTKILQYF-------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~-------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~ 176 (815)
..++|+.+++++ |+++++ |++|+|+++++.+++..+..++|| |++..+.|+.+..... ..| .+.+
T Consensus 58 ~~~lr~~ia~~~~~~~~~~~~~~~~--I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~---~~g~~~~~v 132 (357)
T TIGR03539 58 TPELREAIVDWLERRRGVPGLDPTA--VLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGAL---LAGATPVAA 132 (357)
T ss_pred CHHHHHHHHHHHHHhcCCCCCCcCe--EEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHH---hcCCEEecc
Confidence 345666666665 465665 999999999999998887338999 8888888877654443 344 4444
Q ss_pred CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc-CC
Q psy16512 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GS 255 (815)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~ 255 (815)
+. .+.+. .+++++|++++++||||..+|.+++.++++ .|+++|+++|+|+++.. ..
T Consensus 133 ~~-----~~~l~----------~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~--------~a~~~~~~ii~De~y~~~~~ 189 (357)
T TIGR03539 133 DD-----PTELD----------PVGPDLIWLNSPGNPTGRVLSVDELRAIVA--------WARERGAVVASDECYLELGW 189 (357)
T ss_pred CC-----hhhcC----------ccCccEEEEeCCCCCcCccCCHHHHHHHHH--------HHHHcCeEEEEecchhhhcc
Confidence 31 11111 246899999999999999999776555443 23389999999998652 11
Q ss_pred --CCCC-CC------CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 256 --NMLD-LK------QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 256 --~~~d-l~------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
.+.. +. .....+++.|++|.|+ .+| +||++.+++.++.+.... .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~G~R~G~~i~~~~~~~~~~~~~------------------------~ 244 (357)
T TIGR03539 190 EGRPVSILDPRVCGGDHTGLLAVHSLSKRSN-LAGYRAGFVAGDPALVAELLTVR------------------------K 244 (357)
T ss_pred CCCCccceecccCCCccccEEEEeccccccC-CCceeEEEEecCHHHHHHHHHHH------------------------h
Confidence 1111 10 1123478889999998 447 799998877765542211 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
.....++.+...++..+++....+....++..+.++++.+.|.+. ++.+..+.+ +.++++.++. +
T Consensus 245 ~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~-------g~~~~~p~~-------~~~~~~~~~~-~ 309 (357)
T TIGR03539 245 HAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEKA-------GFRIDHSEA-------GLYLWATRGE-D 309 (357)
T ss_pred hcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCCcCCCc-------cEEEEEECCC-C
Confidence 112244555555555555432222112256667777888888775 455444332 3344444322 1
Q ss_pred CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
..++.+.|.++||.+.+|..+... ..+++|+|++. +.+++
T Consensus 310 -----~~~~~~~l~~~gV~v~pg~~f~~~---------------------------------~~~~iRis~~~--~~~~i 349 (357)
T TIGR03539 310 -----AWDTVDRLAELGILVAPGDFYGPA---------------------------------GSQHVRVALTA--TDERI 349 (357)
T ss_pred -----HHHHHHHHHhCCEEECCccccCCC---------------------------------CCCeEEEEecC--CHHHH
Confidence 234778889999999987643210 13789999985 67888
Q ss_pred HHHHHHH
Q psy16512 485 KYFLSFL 491 (815)
Q Consensus 485 ~~lv~~L 491 (815)
+.+++.|
T Consensus 350 ~~~~~~l 356 (357)
T TIGR03539 350 AAAVARL 356 (357)
T ss_pred HHHHHhh
Confidence 8888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=195.02 Aligned_cols=302 Identities=17% Similarity=0.169 Sum_probs=195.0
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
.++|+.+... ..++.+.+++.+.+... ....|. .. ..++|+++++++|+++++ |++|+|+++++.+
T Consensus 20 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~------~g----~~~lr~~ia~~~~~~~~~--I~~t~G~~~~l~~ 87 (337)
T PRK03967 20 RIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPH------IT----SDPLREAIAEFYGLDAEN--IAVGNGSDELISY 87 (337)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHhhcCccccCCC------CC----HHHHHHHHHHHhCcCcce--EEEcCCHHHHHHH
Confidence 3667766655 45577777776655321 111121 12 678999999999998887 9999999999998
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.++ +|| |++..+.|+.+.. .+...| .++.+.+...+++.+++. .++++++++++|+|||
T Consensus 88 ~~~~~---~gd~V~v~~P~y~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~--------~~~~~~v~~~~P~NPt 153 (337)
T PRK03967 88 LVKLF---EGKHIVITPPTFGMYSF---YAKLNGIPVIDVPLKEDFTIDGERIAEK--------AKNASAVFICSPNNPT 153 (337)
T ss_pred HHHHh---CCCeEEEeCCChHHHHH---HHHHcCCeEEEeecCCCCCcCHHHHHHh--------ccCCCEEEEeCCCCCC
Confidence 88766 488 8888877764433 333344 445544334555555431 2468899999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--CCCC-CCCCCCcEEEEccccccccCCc--ceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS--NMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~--~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~ 289 (815)
|..++.++|.++++ +++++|+|+++.--. .... ......-+++.||+|.|| .+| +||+++++
T Consensus 154 G~~~~~~~l~~i~~------------~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~-l~GlRiG~iv~~~ 220 (337)
T PRK03967 154 GNLQPEEEILKVLE------------TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFG-LAGIRAGYAIANE 220 (337)
T ss_pred CCCCCHHHHHHHHh------------cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhc-chhhhheeeecCH
Confidence 99999999999987 489999999875211 1111 111123477789999999 557 89999988
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++++.+.... ...+.+.++..++..+++.........++..+.++.+.+.|.+.
T Consensus 221 ~~i~~~~~~~--------------------------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 274 (337)
T PRK03967 221 EIIDALYRIK--------------------------PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGEY 274 (337)
T ss_pred HHHHHHHhhc--------------------------CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 7766553221 11234555666665555432222112244455555666666542
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
..+. .++++++.++ +.+.|.++||.++.+..
T Consensus 275 -----------~~~~-------~~~~~~~~~~-----------~~~~l~~~gi~v~~~~~-------------------- 305 (337)
T PRK03967 275 -----------AYPS-------DANFLLLKLD-----------AYDYLLENGIVVRKLSG-------------------- 305 (337)
T ss_pred -----------cCCC-------CCcEEEEhHH-----------HHHHHHHCCEEEEeCCC--------------------
Confidence 1122 2555555432 45677788999985311
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|++++ +.++.++++++|+++..
T Consensus 306 ----------------~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 306 ----------------RLEGHIRVTVG---KREENDEFIKALKEIKE 333 (337)
T ss_pred ----------------CCCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 11378999998 77899999999988653
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=198.93 Aligned_cols=296 Identities=10% Similarity=0.034 Sum_probs=180.2
Q ss_pred HHHHHHHHHhHc---CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhc-----------c
Q psy16512 107 IDQMRTKILQYF---NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKT-----------N 171 (815)
Q Consensus 107 ~~~~r~~la~~~---g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~-----------~ 171 (815)
..++|+.+++++ ++++++ |++|+|+++++.++. .+. .+|| |++..+.|+.+....+..+. .
T Consensus 77 ~~~lr~aia~~~~~~~~~~d~--I~it~Ga~~al~~l~-~l~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~ 152 (402)
T TIGR03542 77 YPFLREAIAENDYRGRIDPEE--IFISDGAKCDVFRLQ-SLF-GSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSK 152 (402)
T ss_pred CHHHHHHHHHHHHhcCCCHHH--EEECCCcHHHHHHHH-Hhc-CCCCEEEEeCCCCcchHHHHHHcCCccccccccccce
Confidence 678999999876 678877 999999999999864 454 7888 99999888877666665554 2
Q ss_pred c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 172 Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 172 g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
. .++.+.++.+..+. .. .+++++|++++++||||.+++.+++.++++ .|+++++++|+|++
T Consensus 153 ~~~v~~~~~~~~~~~~-~~---------~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~--------~a~~~~~~iI~De~ 214 (402)
T TIGR03542 153 ITYLPCTKENNFIPDL-PE---------EPKIDIIYLCSPNNPTGTVLTKEQLKELVD--------YANEHGSLILFDAA 214 (402)
T ss_pred EEEeecchhhCCCCCc-cc---------cCCceEEEEeCCCCCCCccCCHHHHHHHHH--------HHHHcCeEEEEEch
Confidence 2 33433322222221 10 146899999999999999999666555544 23389999999998
Q ss_pred cccC----CCCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccC
Q psy16512 251 TYCG----SNMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 251 ~~~g----~~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
+.-- ..+..+... ...+++.||+|.|| .+| +||++++++++.......... +..
T Consensus 215 y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g-~pGlRiG~~i~~~~l~~~~~~~~~~~-----------~~~---- 278 (402)
T TIGR03542 215 YSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAG-FTGVRLGWTVVPKELTYADGHSVIQD-----------WER---- 278 (402)
T ss_pred hhhhccCCCCCcchhhCCCCcccEEEEecCccccC-CCCcceEEEEecHHHhhcchhhHHHH-----------HHH----
Confidence 6531 112222221 22466889999998 447 899999877641110000000 000
Q ss_pred ccccccCCCCChhHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
.......+.+.+...++..++.. ........+..++.++.+.+.|++. ++++..+.+ ++++++
T Consensus 279 -~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~~~~-------~~f~~v 343 (402)
T TIGR03542 279 -RQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAA-------GFKVYGGEH-------APYLWV 343 (402)
T ss_pred -HhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-------CceecCCCc-------eeEEEE
Confidence 00001113344444443333321 1111111255566677788888775 466654432 678888
Q ss_pred EEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 399 NLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
.++.. ++..++.+.+ .++||.+++|..+... ..+++||++..
T Consensus 344 ~l~~~----~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRis~~~ 386 (402)
T TIGR03542 344 KTPEG----ISSWDFFDFLLYQYHVVGTPGSGFGPS---------------------------------GEGFVRFSAFG 386 (402)
T ss_pred ECCCC----CCHHHHHHHHHHhCCEEEeCchhhCCC---------------------------------CCCEEEEEecC
Confidence 87642 1222355554 5789999988643210 13799999753
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy16512 478 ASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 478 ~~t~edi~~lv~~L~~~ 494 (815)
+++++++.++.|++.
T Consensus 387 --~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 --KRENIVEACERIKEA 401 (402)
T ss_pred --CHHHHHHHHHHHHhh
Confidence 788899988888764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=203.62 Aligned_cols=306 Identities=13% Similarity=0.123 Sum_probs=194.3
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccc-eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g-~v~ 175 (815)
..++|+.|+++++ +++++ |++|+|+++++.+++.++. ++|| |++..+.|+.+...... .+... .++
T Consensus 88 ~~~LR~aiA~~l~~~~~~~~~v~~~~--Iiit~Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~ 164 (468)
T PLN02450 88 LPAFKNALAEFMSEIRGNKVTFDPNK--LVLTAGATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIH 164 (468)
T ss_pred hHHHHHHHHHHHHHhhCCCCCcChHH--eEEccChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHhhcCCcEEEEEe
Confidence 5678888888874 56766 9999999999999999998 9999 88888888777554332 22111 444
Q ss_pred cCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.+.++ ..+.+.++++++.. .+...+++++++++|+||||.+++.+++.++++ +|+++++++|+|++++.
T Consensus 165 ~~~~~~~~~~~~~le~~~~~~-~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~--------~a~~~~~~iI~DE~Y~~ 235 (468)
T PLN02450 165 CSSSNGFQITESALEEAYQQA-QKLNLKVKGVLITNPSNPLGTTTTRTELNLLVD--------FITAKNIHLISDEIYSG 235 (468)
T ss_pred cCCccCCcCCHHHHHHHHHHH-HhcCCCeeEEEEecCCCCCCcccCHHHHHHHHH--------HHHHCCcEEEEEccccc
Confidence 44222 23445555544311 011346899999999999999999888766665 44589999999988762
Q ss_pred ----CCCCCC---CC---------CCCCcEEEEccccccccCCc--ceEEEEeccc-ccccCcccccCceEEEEecCCcc
Q psy16512 254 ----GSNMLD---LK---------QHQPDFISISFYKMFGYPTG--LGALIVKQKS-AHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 254 ----g~~~~d---l~---------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
+....+ +. ....-+++.|++|.|+ .+| +||++.+++. .+.+...
T Consensus 236 ~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~-l~GlRiG~li~~~~~l~~~~~~~---------------- 298 (468)
T PLN02450 236 TVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG-LPGFRVGAIYSNDEMVVSAATKM---------------- 298 (468)
T ss_pred cccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCC-CCCccEEEEEECCHHHHHHHHHH----------------
Confidence 111111 10 1223477889999998 557 8999997654 2222111
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHHHHH---h-hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---K-KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~-~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
...+..+.+...++..+++.-. . +....+++.+.++.+.+.|+++ ++.+..+..
T Consensus 299 ----------~~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-------gi~~~~~~~----- 356 (468)
T PLN02450 299 ----------SSFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-------GIKCLKSNA----- 356 (468)
T ss_pred ----------hhcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCc-----
Confidence 0012334455555555553311 1 1111266777777888888776 555554432
Q ss_pred cccceEEEEEecC-CCCcc-C-HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 391 YQGNIVNFNLLHK-DGTYY-G-YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 391 ~~~~i~~f~~~~~-~~~~~-~-~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.++++.++.. +...+ . ...+.+++.++||.+.+|..|... .
T Consensus 357 --g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~---------------------------------~ 401 (468)
T PLN02450 357 --GLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT---------------------------------E 401 (468)
T ss_pred --eEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC---------------------------------C
Confidence 55777777531 11111 1 112334456789999998765321 1
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
++++|++++. .++++++..++.|++++....
T Consensus 402 ~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 402 PGWFRVCFAN-MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred CCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence 3899999985 357899999999999875444
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=197.62 Aligned_cols=300 Identities=12% Similarity=0.069 Sum_probs=184.8
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ ++++++ |++|+|+++++.+++.++. ++|| |++..+.|+.+.......+... .++.+.
T Consensus 76 ~~~lr~aia~~~~~~~g~~~~~~~--I~it~G~~~al~~~~~~l~-~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~ 152 (409)
T PLN00143 76 ILPARRAIADYLSNDLPYQLSPDD--VYLTLGCKHAAEIIIKVLA-RPEANILLPRPGFPDVETYAIFHHLEIRHFDLLP 152 (409)
T ss_pred CHHHHHHHHHHHHhhcCCCCCHhh--EEEecChHHHHHHHHHHHc-CCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccC
Confidence 567888888876 356666 9999999999999999998 8999 8888888877655544433222 444432
Q ss_pred -h-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 179 -D-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 179 -~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
+ ..++++.++++ ..++++++++++||||||.+++.+++.++++ .|+++++++|+|+++.--.
T Consensus 153 ~~~~~~d~~~l~~~-------~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y~~l~~ 217 (409)
T PLN00143 153 EKGWEVDLDAVEAI-------ADENTIAMVIINPGNPCGSVYSYEHLNKIAE--------TARKLGILVIADEVYGHIVF 217 (409)
T ss_pred CCCCcCCHHHHHHh-------cccCCEEEEEECCCCCCCCccCHHHHHHHHH--------HHHHcCCeEEEEcccccccc
Confidence 2 23566666543 3467899999999999999999777655554 3338999999999865211
Q ss_pred --CC-CC---CCCCCCcEEEEccccccccCCc--ceEEEEe-c-ccccccC--cccccCceEEEEecCCcccccccCccc
Q psy16512 256 --NM-LD---LKQHQPDFISISFYKMFGYPTG--LGALIVK-Q-KSAHVLN--KTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 256 --~~-~d---l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~-~~~~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
.+ .. +.....-+++.||+|.|+ .+| +||++++ + .+++.+. ..+.. .
T Consensus 218 ~~~~~~~~~~~~~~~~vi~~~SfSK~f~-~pGlRvG~~v~~~p~~~~~~~~~~~~~~~---------------------~ 275 (409)
T PLN00143 218 GSKPFVPMGLFASIVPVITLGSISKRWM-IPGWGLGWLVTCDPSGLLQICEIADSIKK---------------------A 275 (409)
T ss_pred CCCCCcchhhhcccCcEEEEccchhhcC-CCccceEEEEeeCchhhhhhHHHHHHHHH---------------------H
Confidence 11 11 111223478889999999 447 8999984 3 2221110 00000 0
Q ss_pred cccCCCCChhHHHHHHHHHHH-HH-hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFDT-ME-KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~-l~-~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~ 400 (815)
.......+.+...++..+++. .. ......++.++.++++.+.|.++ ++.... .|. .+.++++++
T Consensus 276 ~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~~~p~-------gg~f~w~~l 342 (409)
T PLN00143 276 LNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEI------PCIMCPQKAE-------GAFFALVKL 342 (409)
T ss_pred HhccCCCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCCCCCCC-------eeEEEEEec
Confidence 000011233445555444431 01 11111256666667777777765 332222 222 267777777
Q ss_pred ecC--CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 401 LHK--DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 401 ~~~--~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
+.. .+..-+...+.+++.++||.+.+|..+.. .+++||+++
T Consensus 343 ~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------------------------~~~iRi~~~-- 385 (409)
T PLN00143 343 NLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGL-----------------------------------KNWLRITFA-- 385 (409)
T ss_pred chhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC-----------------------------------CCeEEEEEc--
Confidence 531 11000112345666899999998865310 378999998
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy16512 479 SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~ 496 (815)
.+.++++..++.|.+++.
T Consensus 386 ~~~~~l~~al~rl~~~l~ 403 (409)
T PLN00143 386 VEQSSLEDGLGRLKSFCG 403 (409)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 368899999999988764
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=201.00 Aligned_cols=310 Identities=11% Similarity=0.037 Sum_probs=191.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hh-hccc--eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LV-KTNQ--IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~-~~~g--~v~~~~~~~ 181 (815)
.+++++.+++++|.+. +++++|+++|+.+++.++. ++|| ||++...|+....... .. +..| ...++..
T Consensus 78 ~~~LE~~lA~l~g~~~----~l~~~sG~~Ai~~al~al~-~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~-- 150 (418)
T PLN02242 78 VLNLGRQMAALEGTEA----AYCTASGMSAISSVLLQLC-SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDIT-- 150 (418)
T ss_pred HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHh-CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCC--
Confidence 8899999999999865 6788999999999999997 9999 7777776665544322 11 2244 3333322
Q ss_pred hcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
+++.+++ .+++ +|++|++++++||||.+.|+++|.++|+ ++|+++++|+++.... .+.
T Consensus 151 -d~e~l~~-------~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~-----------~~gi~livDea~~~~~--~~~ 209 (418)
T PLN02242 151 -DLEAVKK-------AVVPGKTKVLYFESISNPTLTVADIPELARIAH-----------EKGVTVVVDNTFAPMV--LSP 209 (418)
T ss_pred -CHHHHHH-------hcCcCCCEEEEEecCCCCCCcccCHHHHHHHHH-----------HhCCEEEEECCCCccC--CCH
Confidence 4444444 3345 4999999999999999999999999999 8999999999985332 333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..++.|+++.|++|+++++.. .|+++.++++++.++....+. ....|. ......|+
T Consensus 210 ~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~---------------------~~~~g~-~~~~~~A~ 267 (418)
T PLN02242 210 ARLGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA---------------------LMLLGP-TMNPKVAF 267 (418)
T ss_pred HHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh---------------------hhccCC-CCCHHHHH
Confidence 455789999999999994532 488888877765553221000 001121 11112222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCC---------C---CcccceEEEEEecCCCC
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGE---------S---KYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~---------~---~~~~~i~~f~~~~~~~~ 406 (815)
..+.. +......+++..+.++++.+.|+++ +++++.|...+. . ...+++++|.+.+. +
T Consensus 268 l~~~~-l~tl~~r~~~~~~~a~~la~~L~~~-------~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~--~ 337 (418)
T PLN02242 268 ELSER-LPHLSLRMKEHCRRAMEYAKRMKEL-------GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE--E 337 (418)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHHHHHHHhC-------CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH--H
Confidence 11111 1122223477788889999999886 244443321000 0 24688999999531 1
Q ss_pred ccCHHHHHHhhhcC----CcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 407 YYGYSEVQNLANLK----KIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 407 ~~~~~~v~~~l~~~----gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
. ...+.+.+... .+.+..|...+ ++....+..++.+.... .|...+.||+|+|...
T Consensus 338 ~--~~~f~~~l~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~---------------~gi~~~liRlsvGlE~ 400 (418)
T PLN02242 338 R--ANRLMRYLQNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKAA---------------AGISPGLVRMSVGYTG 400 (418)
T ss_pred H--HHHHHHHhhcccccceeeecCCCCCceeeCCCccccccCCHHHHHh---------------cCCCCCeEEEEecCCC
Confidence 1 11244444422 44555554322 12222333444433221 2566789999999873
Q ss_pred -CHHHHHHHHHHHHH
Q psy16512 480 -NWDDVKYFLSFLNQ 493 (815)
Q Consensus 480 -t~edi~~lv~~L~~ 493 (815)
.++-|+.|-++|++
T Consensus 401 ~~~dli~dl~~al~~ 415 (418)
T PLN02242 401 TLEQRWSQFEKALSA 415 (418)
T ss_pred CHHHHHHHHHHHHHH
Confidence 55556666666654
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=187.37 Aligned_cols=300 Identities=13% Similarity=0.064 Sum_probs=193.4
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC---CCCceeEEecCCchhhHHHHHhhhccCC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT---DSDHYSVIFTSGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~---~~~~~~iv~t~g~t~al~~~~~al~~~~ 148 (815)
+.|+-+.+++.+...+.....-.+.+...++ .+.+++++++++|. +.+ +|++|.|+.+|+..+++++. ++
T Consensus 44 ~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L----~~aL~k~~se~~~~~~~~~~--eVlVT~GA~~ai~~~~~~l~-~~ 116 (420)
T KOG0257|consen 44 PPPKFVTEAAKNAAKEPSTNQYTRGYGLPQL----RKALAKAYSEFYGGLLDPDD--EVLVTAGANEAISSALLGLL-NP 116 (420)
T ss_pred CCcHHHHHHHHHHhccchhccccccCCchHH----HHHHHHHHHHHhccccCCcc--cEEEecCchHHHHHHHHHHc-CC
Confidence 4455666666655443211111112444445 67777888887663 233 49999999999999999998 99
Q ss_pred Cc-EEEecCCCcchhhHHHHhhccc-eEEcC--------chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 149 GS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--------VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 149 gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--------~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
|| ||+.++.+++++....+++..+ +++.. .+..+|.+.++. +++++|++|++++||||||.+.
T Consensus 117 GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~-------~~t~kTk~Ii~ntPhNPtGkvf 189 (420)
T KOG0257|consen 117 GDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELES-------KITEKTKAIILNTPHNPTGKVF 189 (420)
T ss_pred CCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHh-------hccCCccEEEEeCCCCCcCccc
Confidence 99 9999999999999999998887 55554 223455555555 4568999999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCC----CCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDL----KQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl----~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+-+++.+|++ +|++||+++|.|.++.. |...+.+ ..+...+-++|++|+|| .+| +||++.+
T Consensus 190 sReeLe~ia~--------l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~-~TGWrlGW~igp 260 (420)
T KOG0257|consen 190 SREELERIAE--------LCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFG-VTGWRLGWAIGP 260 (420)
T ss_pred CHHHHHHHHH--------HHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceee-eeeeeeeeeech
Confidence 9776555554 44599999999987432 3211212 12335678899999999 889 8999996
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh---hh-----hhH-HHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK---KR-----KSF-TNAFELS 359 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~---~~-----~~~-~~~~~l~ 359 (815)
+.+...+.+... ++ .-+.+.+...|..+++..-.. .+ ..+ +..++.+
T Consensus 261 ~~L~~~~~~vh~-----------------------~~-~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~kr 316 (420)
T KOG0257|consen 261 KHLYSALFPVHQ-----------------------NF-VFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKR 316 (420)
T ss_pred HHhhhhHHHHhh-----------------------cc-ccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHH
Confidence 666543322210 01 112223333333333332221 11 113 6778889
Q ss_pred HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC----c-----cCHHHHHHhhhcCCcEeccCccC
Q psy16512 360 QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT----Y-----YGYSEVQNLANLKKIQLRTGCHC 430 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~----~-----~~~~~v~~~l~~~gI~v~~g~~~ 430 (815)
+.+.+.|.++ +++++.|.+ +.++...++..... . -++.....++.+.|+.+-+++.+
T Consensus 317 dil~k~L~~l-------g~~v~~p~g-------ayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF 382 (420)
T KOG0257|consen 317 DILAKALEEL-------GLKVTGPEG-------AYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAF 382 (420)
T ss_pred HHHHHHHHhc-------CCccccCCC-------ceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhc
Confidence 9999999998 888888875 56666666511110 0 01222445567888887776654
Q ss_pred Cc
Q psy16512 431 NP 432 (815)
Q Consensus 431 ~~ 432 (815)
..
T Consensus 383 ~s 384 (420)
T KOG0257|consen 383 GS 384 (420)
T ss_pred CC
Confidence 43
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=197.36 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=178.9
Q ss_pred HHHHHHHHHhHcCCC-----------CCceeEEecCCchhhHHHHHhhhccC-------------------------CCc
Q psy16512 107 IDQMRTKILQYFNTD-----------SDHYSVIFTSGATSAIKTVSEYFEFN-------------------------EGS 150 (815)
Q Consensus 107 ~~~~r~~la~~~g~~-----------~~~~~iv~t~g~t~al~~~~~al~~~-------------------------~gd 150 (815)
..++-++++++++.. ++...-+||+|+|+|+..++.+.... ++.
T Consensus 131 E~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 210 (522)
T TIGR03799 131 ERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGL 210 (522)
T ss_pred HHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCce
Confidence 667888888888532 12223689999999988876654321 122
Q ss_pred -EEEecCCCcchhhHHHHhhcc--c--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE--ecccCCCccccChHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTN--Q--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY--PAESNFSGTKYPLSWC 223 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~--g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i--~~~~n~tG~~~~l~~I 223 (815)
++++..+|.|+......++.. . .++++.++.++++.++++|.+. ...+++.+++ ++.++.||.+.|+++|
T Consensus 211 ~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~---~~~g~~~~~vvataGtt~tGaiDpl~eI 287 (522)
T TIGR03799 211 AILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAEL---AEQNIKPLAIVGVAGTTETGNIDPLDEM 287 (522)
T ss_pred EEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHH---HHCCCCcEEEEEEecCcCCCCcCCHHHH
Confidence 777788999987766665431 1 6788888889999998866422 1234444444 4668899999999999
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCCCCCC-----CCCC-CCcEEEEccccccccCCcceEEEEeccc-ccccC
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD-----LKQH-QPDFISISFYKMFGYPTGLGALIVKQKS-AHVLN 296 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d-----l~~~-~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~ 296 (815)
+++|+ ++|+|+|||+|++.+....+ +... ++|++++|+|||+++|.|+|++++++.. .+.+.
T Consensus 288 a~i~~-----------~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~ 356 (522)
T TIGR03799 288 ADIAQ-----------ELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIE 356 (522)
T ss_pred HHHHH-----------HcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhc
Confidence 99999 89999999999987765444 3443 7899999999988889999999998643 23332
Q ss_pred c--ccc-cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccc
Q psy16512 297 K--TFY-GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 297 ~--~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~ 371 (815)
+ .|. ..+. ......+++ |+.+..+ +.+..+++++...|... ++..++++++.+.|++.
T Consensus 357 ~~~~Yl~~~~~-------------~d~~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~-- 419 (522)
T TIGR03799 357 HHAEYILRKGS-------------KDLGSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ-- 419 (522)
T ss_pred cCcchhcCCCC-------------Cccccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC--
Confidence 2 111 0000 001123455 4444444 45778888887665443 99999999999999988
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
|+++++.+.. .++++|++.
T Consensus 420 ----~~~el~~~p~-------l~iv~Fr~~ 438 (522)
T TIGR03799 420 ----PDFELVTEPE-------LCLLTYRYV 438 (522)
T ss_pred ----CCeEEecCCC-------ccEEEEEEe
Confidence 8999998653 679999974
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=195.90 Aligned_cols=300 Identities=11% Similarity=0.069 Sum_probs=187.2
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ ++++|+|+++++.+++.++. ++|| |++..+.|+.+.......+... .++.+.
T Consensus 69 ~~~lr~aia~~~~~~~g~~~~~~~-~i~~t~G~~~~l~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~ 146 (395)
T PRK08175 69 IPRLRRAISRWYQDRYDVDIDPES-EAIVTIGSKEGLAHLMLATL-DHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVE 146 (395)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCC-cEEEccCcHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHHcCCeEEEEeccc
Confidence 567777777765 3 34441 39999999999999999887 8999 8888988887655444433222 555554
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc----C
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----G 254 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g 254 (815)
++. ..+.++++++ ...++++++++++++||||.+++.+++.++++ .|+++|+++|+|+++.. +
T Consensus 147 ~~~-~~~~l~~~l~----~~~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~--------~a~~~~i~ii~De~y~~l~~~~ 213 (395)
T PRK08175 147 GVD-FFNELERAIR----ESYPKPKMMILGFPSNPTAQCVELEFFEKVVA--------LAKRYDVLVVHDLAYADIVYDG 213 (395)
T ss_pred CCC-cHHHHHHHHh----hccCCceEEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHcCcEEEEecchHhhccCC
Confidence 332 2344444332 12346899999999999999999965444433 22389999999988642 1
Q ss_pred CCCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 255 SNMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 255 ~~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
..+..+.. .+..+++.|++|.||.| | +||++.++++++.+.... .+...
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~p-GlRiG~~~~~~~l~~~~~~~~------------------------~~~~~ 268 (395)
T PRK08175 214 WKAPSIMQVPGAKDVAVEFFTLSKSYNMA-GWRIGFMVGNPELVSALARIK------------------------SYHDY 268 (395)
T ss_pred CCCcchhcCCCcccCEEEEeeccccccCc-chhheeeeCCHHHHHHHHHHH------------------------hhccc
Confidence 11122111 12346778999999844 7 799999887776553211 01111
Q ss_pred CCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
+.+.....++..++......-.. .+++++.++++.+.|+.+ ++.+..+.+ +.++++.++.... .
T Consensus 269 ~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~p~~-------g~~i~i~l~~~~~-~ 333 (395)
T PRK08175 269 GTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEA-------GWMVEMPKA-------SMYVWAKIPEPYA-A 333 (395)
T ss_pred CCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCE-------EEEEEEECCcccC-C
Confidence 22333334343444321111111 255667777888888876 455554432 7788888864311 0
Q ss_pred cCHHHHHH-hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 408 YGYSEVQN-LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 408 ~~~~~v~~-~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+ ++.++||.+.+|..+.. ...+++|+++. .+.+.+..
T Consensus 334 ~~~~~~~~~l~~~~gv~v~p~~~f~~---------------------------------~~~~~lRis~~--~~~~~~~~ 378 (395)
T PRK08175 334 MGSLEFAKKLLNEAKVCVSPGIGFGD---------------------------------YGDTHVRFALI--ENRDRIRQ 378 (395)
T ss_pred CCHHHHHHHHHHhCCEEEeCchhhCc---------------------------------CCCCeEEEEeC--CCHHHHHH
Confidence 12234555 45689999998865421 11368999997 46788888
Q ss_pred HHHHHHHHHh
Q psy16512 487 FLSFLNQYFL 496 (815)
Q Consensus 487 lv~~L~~~~~ 496 (815)
.++.|.+++.
T Consensus 379 al~~l~~~l~ 388 (395)
T PRK08175 379 AIRGIKAMFR 388 (395)
T ss_pred HHHHHHHHHH
Confidence 8888888775
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=198.61 Aligned_cols=310 Identities=13% Similarity=0.032 Sum_probs=187.2
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+++.+.+++.+...... .+..... .+++++.+++++| +++ +++++|+|+|+.+++.++. ++|| |
T Consensus 10 ~~~~v~~a~~~~~~~~~------~~~~~~~----~~~l~~~~a~~~g--~~~--~~~~~~gt~a~~~~~~~l~-~~gd~v 74 (338)
T cd06502 10 PTPEMLEAMAAANVGDD------VYGEDPT----TAKLEARAAELFG--KEA--ALFVPSGTAANQLALAAHT-QPGGSV 74 (338)
T ss_pred CCHHHHHHHHhcccCCc------ccCCCHH----HHHHHHHHHHHhC--CCe--EEEecCchHHHHHHHHHhc-CCCCeE
Confidence 55677777765432110 1111233 7889999999999 333 8899999999999999987 8999 8
Q ss_pred EEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HH
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CN 224 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~ 224 (815)
+++...|+++......+...| .++.+. ...+.++++++++.......+++++|++++++|+ |.+++.++ |.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i~ 152 (338)
T cd06502 75 ICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAIS 152 (338)
T ss_pred EEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHHH
Confidence 888888887653211222234 344332 3466666665443100000136899999999997 65556555 56
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~ 299 (815)
++|+ ++|+++++|+++..+. ..+.....++|+++.|+||+|+.| |.++++.++++++.+++..
T Consensus 153 ~~~~-----------~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~-~g~~~~~~~~~~~~~~~~~ 220 (338)
T cd06502 153 ALAK-----------ENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAP-VGAVVVGNRDFIARARRRR 220 (338)
T ss_pred HHHH-----------HcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCc-cceEEECCHHHHHHHHHHH
Confidence 6666 8999999999864221 111111236899999999999955 5345556777766654321
Q ss_pred ccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
... .++ .+.....++..+++.- ......++..++++++.+.|+++ +
T Consensus 221 ~~~------------------------~~~~~~~~~~~~a~~~~L~~~-~~~~~~~~~~~~~~~l~~~L~~~-------~ 268 (338)
T cd06502 221 KQA------------------------GGGMRQSGFLAAAGLAALEND-LWLRRLRHDHEMARRLAEALEEL-------G 268 (338)
T ss_pred HHh------------------------CCChhhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 110 111 1222223333333210 11112277888889999999887 3
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh---cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN---LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~---~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
+.++. ..++++.+.++.. ..+ ...+.+.+. ++||.++...
T Consensus 269 ~~~~~--------~~~~~~~v~~~~~--~~~-~~~l~~~l~~~~~~gi~~~~~~-------------------------- 311 (338)
T cd06502 269 GLESE--------VQTNIVLLDPVEA--NAV-FVELSKEAIERRGEGVLFYAWG-------------------------- 311 (338)
T ss_pred CCccc--------ccCCeEEEecCCc--cHH-HHHHHHHHHHhhhCCEEEEecC--------------------------
Confidence 33332 2367777766421 111 111222221 5687765320
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.++|||+++++++++|++++++++++
T Consensus 312 -------------~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 312 -------------EGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred -------------CCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 16799999999999999999999865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=197.28 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=122.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+. .++++++++|+..++.++. ++|| +|++...|+..+. +...+...| ...++.+
T Consensus 59 ~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~--- 130 (418)
T TIGR01326 59 TDVLEQRIAALEGGVA----ALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD--- 130 (418)
T ss_pred HHHHHHHHHHHhCCCe----EEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC---
Confidence 7899999999999743 7888999999999998887 8999 8888877766544 445555566 4444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||+|.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 131 d~~~l~~-------~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~-----------~~~i~livD~t~~~~~~~~~l-~ 191 (418)
T TIGR01326 131 DPEEFEK-------AIDENTKAVFAETIGNPAINVPDIEAIAEVAH-----------AHGVPLIVDNTFATPYLCRPI-D 191 (418)
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCchhhcCCch-h
Confidence 4444444 33467999999999999999999999999999 899999999999876433233 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
.++|+++.|++|+++ ++| +|++++++.
T Consensus 192 ~g~Divv~S~sK~l~-g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 192 HGADIVVHSATKYIG-GHGTAIGGVIVDGG 220 (418)
T ss_pred cCCeEEEECcccccc-CCccceEEEEEecc
Confidence 579999999999999 445 788888653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=196.22 Aligned_cols=299 Identities=12% Similarity=0.051 Sum_probs=185.4
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc--------
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN-------- 171 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~-------- 171 (815)
..++|+++++++ ++++++ |++|+|+++++.++. .+. .+|| |++..+.|+.+....+..+..
T Consensus 78 ~~~LR~aia~~~~~~~g~~~~~~~--I~it~Ga~~al~~l~-~~~-~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~ 153 (409)
T PRK07590 78 YDFLREKIAENDYQARGCDISADE--IFISDGAKCDTGNIL-DIF-GPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGR 153 (409)
T ss_pred CHHHHHHHHHHHHHhcCCcCChhh--EEECCCHHHHHHHHH-Hhc-CCCCEEEEeCCCCcchHHHHHHcCCccccccccc
Confidence 667888888875 677776 999999999999865 454 7899 899998888877766666654
Q ss_pred ---c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEE
Q psy16512 172 ---Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLL 247 (815)
Q Consensus 172 ---g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~viv 247 (815)
. .++++.++.+.++ +. .+++++|++++|+||||.+++.+++.++++ .|+++++++|+
T Consensus 154 ~~~~~~v~~~~~~~~~~d-~~----------~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~--------~a~~~~~~iI~ 214 (409)
T PRK07590 154 YSGIVYLPCTAENNFVPE-LP----------EEKVDIIYLCFPNNPTGTVLTKEQLKAWVD--------YAKENGSLILF 214 (409)
T ss_pred ccceeEeecccccCCccc-Cc----------ccCceEEEEeCCCCCcCCcCCHHHHHHHHH--------HHHHcCeEEEE
Confidence 2 3444433222222 11 246899999999999999999888766665 34489999999
Q ss_pred eccccc----CCCCCCCCCCC----CcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccccc
Q psy16512 248 DAATYC----GSNMLDLKQHQ----PDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIK 317 (815)
Q Consensus 248 D~a~~~----g~~~~dl~~~~----~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 317 (815)
|+++.- +..+..+.... .-+++.||+|.|| .+| +||+++++++++.+...- .. . ....+.
T Consensus 215 De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~pGlRiG~~i~~~~li~~~~~~~---~~-~---~~~~~~-- 284 (409)
T PRK07590 215 DAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAG-FTGTRCAYTVVPKELKGKTSDGE---GV-S---LNSLWN-- 284 (409)
T ss_pred EccchhhccCCCCCcchhhCCCcccceEEEecCccccC-CcCceeEEEEcCHHHhhhccccc---hh-h---hHHHHH--
Confidence 998652 11112222221 2367789999998 447 899999887764221000 00 0 000000
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
........+.+.+...++..++.. ........++.++.++++.+.|+.. ++.+..+.+ +.+
T Consensus 285 ---~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~~~~~~g-------~~f 347 (409)
T PRK07590 285 ---RRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESA-------GFEVYGGVN-------APY 347 (409)
T ss_pred ---HHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-------CCceecCCc-------ceE
Confidence 000000123444555555444431 1111111256667777888888775 455554432 667
Q ss_pred EEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
+++.++.. ++..++.+. +.++||.+.+|..+... ..+++||+
T Consensus 348 ~wi~~~~~----~~~~~~~~~l~~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~ 390 (409)
T PRK07590 348 IWVKTPDG----MSSWDFFDKLLQEANVVGTPGSGFGPS---------------------------------GEGYFRLS 390 (409)
T ss_pred EEEECCCC----CCHHHHHHHHHHHCCEEEeChhHhCCC---------------------------------CCCEEEEE
Confidence 78877642 122235544 46789999988654210 13789999
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q psy16512 475 YGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~~ 494 (815)
+. .++++++..++.|.++
T Consensus 391 ~~--~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 391 AF--GSRENVLEAMERIKKA 408 (409)
T ss_pred cc--CCHHHHHHHHHHHHhh
Confidence 63 4789999999988764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-19 Score=210.64 Aligned_cols=303 Identities=13% Similarity=0.074 Sum_probs=217.7
Q ss_pred hhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC--c-EEEecCCCcchhh-HHHHhhccc--
Q psy16512 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG--S-FIYLTDNHTSVLG-MRELVKTNQ-- 172 (815)
Q Consensus 99 ~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g--d-vv~~~~~h~s~~~-~~~~~~~~g-- 172 (815)
..+..-+.+-+.++.++++.|++..+ +.+..++|++.+.++.++.++++ + |+++..+||+... +...++..|
T Consensus 115 isQG~Leal~~~Qt~la~LtG~~~an--aSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~e 192 (954)
T PRK05367 115 ISQGRLEALLNFQTMVADLTGLEIAN--ASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIE 192 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhh--ccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCE
Confidence 33444455788999999999999987 99999999999999999876664 6 9999999999765 556667777
Q ss_pred eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+.++.+. +.+ +.++..+ +.+..|.+|.+.|+++|++++| ++|++++||+.+.
T Consensus 193 v~~~~~~~--d~~-------------~~~~~~v-lvq~p~~~G~i~d~~~i~~~ah-----------~~Gal~~vda~~~ 245 (954)
T PRK05367 193 VVVGDAAK--ALD-------------HDDVFGV-LLQYPGTSGEVRDYTALIAAAH-----------ARGALVAVAADLL 245 (954)
T ss_pred EEEecCcc--CCC-------------cccEEEE-EEecCCCCeeeccHHHHHHHHH-----------HcCCEEEEEehhh
Confidence 33333221 111 1234444 4555689999999999999999 8999999999875
Q ss_pred cCCCCCCCCCCCCcEEEEccccc-----cccCCcceEEEEecccccccCcccccCceEEEEecCCccc--ccccCccccc
Q psy16512 253 CGSNMLDLKQHQPDFISISFYKM-----FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFH--IKKDGLFEKF 325 (815)
Q Consensus 253 ~g~~~~dl~~~~~D~vv~S~~K~-----~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~ 325 (815)
+.....+..++++|++++|.||| |||| |.|++++++++.+.+.+.+.|+.... .....+. ....+...|+
T Consensus 246 Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP-~aGflavr~~~~r~lpgrivG~s~d~--~g~~~~~lalqtReqhiRr 322 (954)
T PRK05367 246 ALTLLTPPGEMGADIAVGSAQRFGVPMGFGGP-HAAYFAVRDAYKRSMPGRIVGVSVDA--AGNPALRLALQTREQHIRR 322 (954)
T ss_pred hccCCCChhhcCCCEEEeeCcccCCCCCCCCC-CEEEEEECHHHHhhCCCCeeeeeccc--CCCcccccccccccccccc
Confidence 55555567889999999999999 7777 69999999998888877766653110 0001111 1112223477
Q ss_pred cCCCCChhHHHHHHHHHH-----HHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 326 EDGTVNYLAIISLKYGFD-----TMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~-----~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
+.+|.|+....++.+.+. ++...|... +++..++.++.+.|++. ++++..+.. ...+.+
T Consensus 323 ekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~-------G~~~~~~~~-------f~~~~~ 388 (954)
T PRK05367 323 EKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRAL-------GLEVVHDSF-------FDTLTV 388 (954)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-------CcccCCCCC-------CCeEEE
Confidence 899999876655554443 334444332 88999999999999775 677664432 356666
Q ss_pred EEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
.+. . +..++.+.|.++||.++.- ..+.+|+|++.+
T Consensus 389 ~~~-~-----~~~~i~~~l~~~gi~~~~~---------------------------------------~~~~l~is~~e~ 423 (954)
T PRK05367 389 EVG-G-----DAAAVLARALAAGINLRRV---------------------------------------DDDHVGISLDET 423 (954)
T ss_pred eCC-C-----CHHHHHHHHHHCCceeccc---------------------------------------cCCEEEEEeccc
Confidence 643 1 2346889999999988421 026799999999
Q ss_pred CCHHHHHHHHHHHH
Q psy16512 479 SNWDDVKYFLSFLN 492 (815)
Q Consensus 479 ~t~edi~~lv~~L~ 492 (815)
+|++||++|+++|.
T Consensus 424 ~t~~did~l~~~l~ 437 (954)
T PRK05367 424 TTREDLAALLAVFG 437 (954)
T ss_pred CCHHHHHHHHHHHc
Confidence 99999999999997
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=195.65 Aligned_cols=280 Identities=11% Similarity=0.040 Sum_probs=176.8
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCc
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~ 178 (815)
..++|+.+++++ | +++++ |++|+|+++++.+++..+..++|| |++..+.|+.+.......+.. .+.++.
T Consensus 64 ~~~lr~~ia~~l~~~~~~~~~~~~~--I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~-~~~~~~ 140 (364)
T PRK07865 64 TPELREAIVGWLARRRGVTGLDPAA--VLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGAT-VVRADS 140 (364)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCccc--EEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCE-EEecCC
Confidence 456677777766 4 55666 999999999999988887338899 888888887765544433211 444431
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS--- 255 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~--- 255 (815)
.+.+. .+++++|++++++||||.+++.+++.++++ .|+++|+++|+|+++..-.
T Consensus 141 -----~~~l~----------~~~~~~v~~~~p~NPtG~~~~~~~~~~i~~--------~a~~~~~~ii~De~y~~~~~~~ 197 (364)
T PRK07865 141 -----LTELG----------PQRPALIWLNSPSNPTGRVLGVDHLRKVVA--------WARERGAVVASDECYLELGWDA 197 (364)
T ss_pred -----hhhCC----------cccceEEEEcCCCCCCCccCCHHHHHHHHH--------HHHHcCCEEEEecchhhhccCC
Confidence 11111 146899999999999999999776555543 2238999999999876311
Q ss_pred CCCC-CC------CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 NMLD-LK------QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ~~~d-l~------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
.+.. +. .....+++.|++|.|+. +| +||++.++++++.+.... ...
T Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~GlRiG~i~~~~~~~~~~~~~~------------------------~~~ 252 (364)
T PRK07865 198 EPVSILDPRVCGGDHTGLLAVHSLSKQSNL-AGYRAGFVAGDPALVAELLEVR------------------------KHA 252 (364)
T ss_pred CCCccccccccCCccceEEEEeechhccCC-CceeeEEEecCHHHHHHHHHHH------------------------Hhc
Confidence 0111 10 11234888999999984 46 899998887766553211 011
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
..+.+.+...++..+++.........+.....++.+.+.|++. ++.+..+.+ +.++++.+. .+
T Consensus 253 ~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~-~~-- 315 (364)
T PRK07865 253 GMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEAA-------GFRVDHSEA-------GLYLWATRG-ED-- 315 (364)
T ss_pred CCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHc-------CCcccCCCc-------cEEEEEeCC-CC--
Confidence 1234445555555555432222112266677777888888775 455554432 334444432 11
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
..++.+.|.++||.+.+|..+.+. ..+++|++++. +++++++
T Consensus 316 ---~~~~~~~l~~~gv~v~pg~~f~~~---------------------------------~~~~iRi~~~~--~~~~~~~ 357 (364)
T PRK07865 316 ---CWDTVAWLAERGILVAPGDFYGPA---------------------------------GAQHVRVALTA--TDERIAA 357 (364)
T ss_pred ---HHHHHHHHHHCCEEEeCccccCcC---------------------------------CCCEEEEEecC--CHHHHHH
Confidence 234677888999999987643211 13789999974 6899999
Q ss_pred HHHHHH
Q psy16512 487 FLSFLN 492 (815)
Q Consensus 487 lv~~L~ 492 (815)
+++.|.
T Consensus 358 ~~~~l~ 363 (364)
T PRK07865 358 AVERLA 363 (364)
T ss_pred HHHHhh
Confidence 988874
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-19 Score=194.87 Aligned_cols=299 Identities=14% Similarity=0.104 Sum_probs=188.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|++. .++++|+++|+.+++ ++. .+|| ||++...|++... +...+...| ...++. .
T Consensus 54 ~~~le~~la~l~g~~~----~~~~~sG~~ai~~~~-~ll-~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~---~ 124 (366)
T PRK08247 54 RGVLEQAIADLEGGDQ----GFACSSGMAAIQLVM-SLF-RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT---A 124 (366)
T ss_pred HHHHHHHHHHHhCCCc----EEEEcCHHHHHHHHH-HHh-CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC---C
Confidence 8899999999999865 466677788998876 455 7898 8888888887554 344455566 333432 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++|+||+|...++++|.++|+ ++|+++++|++++.+.....+ .
T Consensus 125 d~~~l~~-------~i~~~tklv~le~P~NP~~~~~dl~~I~~la~-----------~~g~~lIvD~t~~~~~~~~p~-~ 185 (366)
T PRK08247 125 SLKAIEQ-------AITPNTKAIFIETPTNPLMQETDIAAIAKIAK-----------KHGLLLIVDNTFYTPVLQRPL-E 185 (366)
T ss_pred CHHHHHH-------hcccCceEEEEECCCCCCCcHHHHHHHHHHHH-----------HcCCEEEEECCCccccccCch-h
Confidence 4444544 33468999999999999999999999999999 899999999998766533322 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
.+.|+++.|++|+++++.+ .|+++.+ +++.+.+.... .......+....+.+.
T Consensus 186 ~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~------------------------~~~g~~~s~~~a~l~~ 241 (366)
T PRK08247 186 EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQ------------------------NAAGAVLSPFDSWLLI 241 (366)
T ss_pred cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHH------------------------HhcCCCCChHHHHHHH
Confidence 5789999999999996655 4666665 34443332111 0111122323333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
.+++.+ ...+++.++.++.+.+.|++. |++.. +.|. .+++++|.+.+ .+. ...+...+.
T Consensus 242 ~~l~tl---~~r~~~~~~~a~~l~~~L~~~------p~v~~v~~P~-------~gg~~sf~~~~--~~~--~~~~~~~l~ 301 (366)
T PRK08247 242 RGMKTL---ALRMRQHEENAKAIAAFLNEQ------PGVTDVLYPG-------RGGMLSFRLQD--EEW--VNPFLKSLK 301 (366)
T ss_pred hccCcH---HHHHHHHHHHHHHHHHHHHhC------CCeeEEecCC-------cCcEEEEEECC--HHH--HHHHHHcCC
Confidence 344332 223466788889999999887 67764 3332 37899998742 110 012333334
Q ss_pred cCCcEeccCcc----CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 419 LKKIQLRTGCH----CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 419 ~~gI~v~~g~~----~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
...+..+.|.. +.|..+ .+.+++++.... .|...+.+|+|+|..+.++-++.|.++|++
T Consensus 302 ~~~~~~slg~~~sl~~~p~~~-~~~~~~~~~r~~---------------~gi~~~~~R~svGlE~~~dl~~dl~~al~~ 364 (366)
T PRK08247 302 LITFAESLGGVESFITYPATQ-THADIPEEIRIA---------------NGVCNRLLRFSVGIENVEDLIADLKQAFKQ 364 (366)
T ss_pred cceEccCCCCCceEEECCccc-ccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 33334443321 112211 233444332221 145568999999987666666666666653
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-18 Score=189.76 Aligned_cols=337 Identities=14% Similarity=0.072 Sum_probs=200.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~ 183 (815)
..++++.+++++|++. .++++|+|+|+.+++.++..++|| |+++..+|++........+... .+++++ +..++
T Consensus 31 ~~~le~~la~~~g~~~----~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d 106 (380)
T TIGR03588 31 VPAFEEALAEYVGAKY----AVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDTGNID 106 (380)
T ss_pred HHHHHHHHHHHHCCCe----EEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence 7889999999999853 455567899999999998448999 8898888877655444333222 566654 33466
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.+++++++ ...++|++|+++ |++|...|+++|.++|+ ++|+++|+|++|+.|.. ++...+
T Consensus 107 ~~~l~~~i~~---~~~~~t~~v~~~---~~~G~~~~~~~i~~l~~-----------~~~~~lI~D~a~a~g~~-~~~~~~ 168 (380)
T TIGR03588 107 EDALEKKLAA---AKGKLPKAIVPV---DFAGKSVDMQAIAALAK-----------KHGLKIIEDASHALGAE-YGGKPV 168 (380)
T ss_pred HHHHHHHhhc---ccCCCceEEEEe---CCCCccCCHHHHHHHHH-----------HcCCEEEEECCCcccCc-cCCEeC
Confidence 6666654420 001568888865 46899999999999999 89999999999999875 444445
Q ss_pred CC----cEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCC--C-hh
Q psy16512 264 QP----DFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV--N-YL 333 (815)
Q Consensus 264 ~~----D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~-~~ 333 (815)
+. |+.++|+| |+++.+. .|+++.+ +++.++++.....+..... ..+. .....+..++.++. | -+
T Consensus 169 g~~~~~d~~~~S~~~~K~~~~~~-GG~v~~~~~~~~~~~~~~~~~g~~~~~----~~~~-~~~~~~~~~~~~~~g~n~~m 242 (380)
T TIGR03588 169 GNCRYADATVFSFHPVKIITTAE-GGAVTTNDEELAERMRLLRSHGITKDP----LLFE-KQDEGPWYYEQQELGFNYRM 242 (380)
T ss_pred CCccccceEEEecCCCCcccccC-ceEEEECCHHHHHHHHHHHHCCCCCCc----cccc-ccccCcceeeeeccccccCc
Confidence 55 99999998 8887443 4555554 4455555432222211000 0000 00011111221111 1 11
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEV 413 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v 413 (815)
.-+.+..++..+.++....++.+++++++.+.|+++ |++.++.+... ......+..+.+... ...+..++
T Consensus 243 ~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~~------~~~~~~~~~~~--~~~~~~~~~i~~~~~--~~~~r~~l 312 (380)
T TIGR03588 243 TDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKDL------PYFTPLTIPLG--SKSAWHLYPILLDQE--FGCTRKEV 312 (380)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCccCCCCCCC--CEeEEEEEEEEECCc--CCCCHHHH
Confidence 112222233444554334478889999999999887 56654433210 001112223333221 12345678
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.|.++||.++....+. +.++.+. .+.. .......+......++++++...|++|+++++++|++
T Consensus 313 ~~~L~~~gI~~~~~~~~~--~~~~~~~-----------~~~~-~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~ 378 (380)
T TIGR03588 313 FEALRAAGIGVQVHYIPV--HLQPYYR-----------QGFG-DGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK 378 (380)
T ss_pred HHHHHHCCCCcccCCccc--ccChhhh-----------ccCC-cCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence 999999999998654321 1111000 0000 0001111122247899999999999999999999998
Q ss_pred HH
Q psy16512 494 YF 495 (815)
Q Consensus 494 ~~ 495 (815)
++
T Consensus 379 ~~ 380 (380)
T TIGR03588 379 VL 380 (380)
T ss_pred hC
Confidence 64
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=191.03 Aligned_cols=268 Identities=12% Similarity=0.060 Sum_probs=177.4
Q ss_pred HHHHHHHHhHcCCCC-CceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eEEcCchhhhcc
Q psy16512 108 DQMRTKILQYFNTDS-DHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 108 ~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~ 184 (815)
.++++.+++++|.++ ++ |++|+|+++++.++.. +. ++|++++..+.|+.+. ..++..| .++++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~~~--I~i~~Gs~e~i~~l~~-~~-~~g~v~v~~P~y~~y~---~~~~~~g~~~~~v~~~~---- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAH--VLPVAGSQAAIRALPA-LL-PRGRVGIAPLAYSEYA---PAFARHGHRVVPLDEAA---- 124 (339)
T ss_pred HHHHHHHHHHhCCCCccc--EEECcCHHHHHHHHHH-hc-CCCeEEEcCCCcHHHH---HHHHHCCCEEEeecccc----
Confidence 578999999999974 55 9999999999987765 44 7788777775555544 4444445 44443221
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--- 261 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--- 261 (815)
+.+. ..++++++++||||||.+++.+++.++++ .|+++++++|+|+++.-.....++.
T Consensus 125 ~~~~-----------~~~~~v~l~nPnNPTG~~~s~~~l~~l~~--------~~~~~~~~vI~DEay~~~~~~~s~~~~~ 185 (339)
T PRK06959 125 DTLP-----------AALTHLIVVNPNNPTAERLPAARLLRWHA--------QLAARGGTLIVDEAFADTLPAASLAAHT 185 (339)
T ss_pred hhcc-----------ccCCEEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHcCCEEEEECCCccCCCcccchhcc
Confidence 1111 23679999999999999999999888765 2236788999999866432111111
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
....-+++.||+|.|| .+| +||++.++++++.+.... ...+.+.++..++.
T Consensus 186 ~~~~vi~l~SfSK~~g-l~GlRiGy~v~~~~li~~l~~~~--------------------------~~~~vs~~~q~a~~ 238 (339)
T PRK06959 186 DRPGLVVLRSVGKFFG-LAGVRAGFVLAAPALLAALRDAL--------------------------GAWTVSGPARHAVR 238 (339)
T ss_pred CCCCEEEEecChhhcC-CcchheEEEecCHHHHHHHHHhc--------------------------CCCCCcHHHHHHHH
Confidence 1222377889999999 557 799999988876653321 11234455555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
++++.........+++.+.++++.+.|+++ ++.+.. .+.++++.++ +. .++.+.|.+
T Consensus 239 ~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~---------~~~f~~~~~~--~~-----~~l~~~l~~ 295 (339)
T PRK06959 239 AAFADAAWQAAMRERLAADGARLAALLRAH-------GFAVHA---------TPLFSWTDDP--RA-----AALHAALAR 295 (339)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCccC---------cceEEEEeCC--CH-----HHHHHHHHh
Confidence 555432211112277778888899999886 444431 1445555543 21 347888899
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+||.++. |.. .+++|||++ .+.+++++++++|++++
T Consensus 296 ~GI~vr~---~~~-----------------------------------~~~lRisi~--~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 296 RGIWTRY---FAP-----------------------------------PPSVRFGLP--ADEAEWQRLEDALAECV 331 (339)
T ss_pred CCeEEEE---CCC-----------------------------------CCeEEEECC--CCHHHHHHHHHHHHHHH
Confidence 9999973 210 268999984 27789999999998865
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=193.43 Aligned_cols=329 Identities=11% Similarity=0.059 Sum_probs=199.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g--~v~~~~~~~~ 182 (815)
++++++.++++.|... .+.++|+++|+.+++.++. ++|| ||++...|.+...+... +...| ...++. ..
T Consensus 63 v~~lE~~la~leg~~~----av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~--~~ 135 (432)
T PRK06702 63 LAAFEQKLAELEGGVG----AVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP--NL 135 (432)
T ss_pred HHHHHHHHHHHhCCCc----EEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC--CC
Confidence 8899999999999864 6778999999999999987 9999 88888877765554333 45666 333332 23
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ +++++|++|++.++.||++.+.|+++|+++|+ ++|+++++|++.+.+... ..-.
T Consensus 136 d~~~l~~-------~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~-----------~~gi~livD~T~~tP~~~-~pl~ 196 (432)
T PRK06702 136 TADEIVA-------LANDKTKLVYAESLGNPAMNVLNFKEFSDAAK-----------ELEVPFIVDNTLATPYLC-QAFE 196 (432)
T ss_pred CHHHHHH-------hCCcCCeEEEEEcCCCccccccCHHHHHHHHH-----------HcCCEEEEECCCCchhhC-Chhh
Confidence 4455555 34578999999999999999999999999999 899999999998765321 2225
Q ss_pred CCCcEEEEccccccccCCc-ceEEEE-ecccc-------cccCc--ccccCceEEEEecC--CcccccccCccccccCCC
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIV-KQKSA-------HVLNK--TFYGGGTVKISMAN--ENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~-~~~~~-------~~l~~--~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~gt 329 (815)
+++|+++.|.+|++++..+ +|.+++ ...+. +.+.+ .++.. ....+. ..+.........+....+
T Consensus 197 ~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (432)
T PRK06702 197 HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGV---SYVQNFGAAAYIVKARVQLLRDYGNC 273 (432)
T ss_pred cCCCEEEEccccccCCCcceeceEEEeCCCccccccccccccccccccccc---chhhccchhhHHHHHHHHHHHHccCC
Confidence 6899999999999997765 444444 32210 00000 00000 000000 000000000001112234
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC----------CCcccceEEE
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE----------SKYQGNIVNF 398 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~----------~~~~~~i~~f 398 (815)
++....+.+..+|+.+. ..+++..+.+..+.+.|++. |.++ ++-|...+. ....+++++|
T Consensus 274 ~sp~~a~l~~rgL~Tl~---lR~~r~~~Na~~la~~L~~~------p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf 344 (432)
T PRK06702 274 MSPFNAYISNIGLETLH---LRMERHSENALAVAKWLADH------ERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTF 344 (432)
T ss_pred CCHHHHHHHHhccCcHH---HHHHHHHHHHHHHHHHHHhC------CCcceEECCCCCCCccHHHHHHhCcCCCceEEEE
Confidence 45454444445554433 34577788888899999887 5544 222221110 1235789999
Q ss_pred EEecCCCCccCHHHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
.+.+. .+. ...+.+.|+-..+.++.|.. ..++....+..+++++.... |...+.||+|+
T Consensus 345 ~l~~~-~~~--~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~---------------Gi~~~liRlSv 406 (432)
T PRK06702 345 GIKGG-LEA--AKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLA---------------GVTSDLIRLSV 406 (432)
T ss_pred EecCC-HHH--HHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhc---------------CCCCCeEEEEe
Confidence 99732 111 12456666666666666632 22233333445555443222 55678999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy16512 476 GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~ 495 (815)
|.. |++.|++-|++.+
T Consensus 407 GlE----d~eDLi~Dl~~Al 422 (432)
T PRK06702 407 GIE----DVSDIIADLEAAL 422 (432)
T ss_pred ccC----CHHHHHHHHHHHH
Confidence 975 4555555555544
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=190.87 Aligned_cols=307 Identities=12% Similarity=0.004 Sum_probs=194.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+.+++.++.+.+.+. .++++++++|+..++.++. ++|| ||++...|+....+. ..+++.| ...++.+
T Consensus 66 ~~~Le~~la~le~~~~----~v~~sSG~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~--- 137 (395)
T PRK05967 66 TDALCKAIDALEGSAG----TILVPSGLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPE--- 137 (395)
T ss_pred HHHHHHHHHHHhCCCC----EEEECcHHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCC---
Confidence 7788999999887543 3555557899999999997 9999 888888887766533 5566677 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .+.++|++|++++|+||++.+.|+++|+++|+ ++|+++++|++++.+... ...+
T Consensus 138 ~~e~l~~-------al~~~TklV~lesPsNP~l~v~dl~~I~~la~-----------~~g~~vvVD~t~a~p~~~-~pl~ 198 (395)
T PRK05967 138 IGAGIAK-------LMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAH-----------RHGAIVMMDNTWATPLYF-RPLD 198 (395)
T ss_pred CHHHHHH-------hcCcCceEEEEECCCCCCCcHHHHHHHHHHHH-----------HhCCEEEEECCccCceec-ChhH
Confidence 1122333 44578999999999999999999999999999 899999999999877432 2335
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|.+|++++..+ .|+++.+++..+++.... +....+++....+.+..
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~------------------------~~~G~~~~p~da~l~~r 254 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAH------------------------GTLGLCAGPDDTYQILR 254 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHH------------------------HHcCCCCCHHHHHHHHc
Confidence 6999999999999884433 566655554433332111 12233455555555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCC---------CCCcccceEEEEEecC---CCCc
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYG---------ESKYQGNIVNFNLLHK---DGTY 407 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~---------~~~~~~~i~~f~~~~~---~~~~ 407 (815)
+++.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+ .....+++++|.+.+. ..+.
T Consensus 255 gl~Tl~---lR~~~~~~na~~lA~~L~~h------p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~ 325 (395)
T PRK05967 255 GLRTMG---IRLEHHRKSALEIARWLEGR------PDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAK 325 (395)
T ss_pred CcccHH---HHHHHHHHHHHHHHHHHHhC------CCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHH
Confidence 555443 24467777777777778776 333 233222100 0124588999999732 1111
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
...+.+.|+-..+.++.|...+-- .+..++.+.+.. .|..++.||+|+|..+.++-++.|
T Consensus 326 --~~~f~~~l~l~~~~~slG~~~sLi---~~~~~~~~~~~~---------------~~~~~~liRlSvGlEd~~dLi~Dl 385 (395)
T PRK05967 326 --AHAFLDALEIFGLGYSWGGYESLA---LHVKLGDRTVAK---------------APYAGPVIRLQIGLEDVPDLKADL 385 (395)
T ss_pred --HHHHHHhCCcceEccCCCCcceee---eeCCCChhHhhh---------------ccCCCCeEEEEeccCCHHHHHHHH
Confidence 123555666555666666432211 112333322211 134457999999988766667777
Q ss_pred HHHHHH
Q psy16512 488 LSFLNQ 493 (815)
Q Consensus 488 v~~L~~ 493 (815)
.++|++
T Consensus 386 ~~Al~~ 391 (395)
T PRK05967 386 ERGFAA 391 (395)
T ss_pred HHHHHh
Confidence 777654
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=193.00 Aligned_cols=287 Identities=11% Similarity=0.052 Sum_probs=171.9
Q ss_pred HHHHHHHHHhH----cC--CCCCceeEEecCCchhhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQY----FN--TDSDHYSVIFTSGATSAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~----~g--~~~~~~~iv~t~g~t~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.++++ .| +++++ |++|+|+++|+..++.++.. .+|| |++..+.|+.+.......+... .++.+
T Consensus 62 ~~~lr~aia~~l~~~~g~~~~~~~--I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~ 139 (374)
T PRK05839 62 EESLREAQRGFFKRRFKIELKENE--LIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLT 139 (374)
T ss_pred CHHHHHHHHHHHHHHhCCCCCcce--EEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecc
Confidence 44566666554 46 56666 99999999999998887753 4678 7788877766655544332222 55555
Q ss_pred chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--
Q psy16512 178 VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-- 255 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-- 255 (815)
.++.+.++..... .+++++|++++||||||..++.+++.++++ .|+++|+++|+|++++--.
T Consensus 140 ~~~~~~~d~~~~~--------~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~--------~~~~~~~~ii~DE~Y~~~~~~ 203 (374)
T PRK05839 140 KENDFTPSLNEKE--------LQEVDLVILNSPNNPTGRTLSLEELIEWVK--------LALKHDFILINDECYSEIYEN 203 (374)
T ss_pred cccCCcCCcchhh--------hccccEEEEeCCCCCcCcccCHHHHHHHHH--------HHHHcCCEEEeccchhhcccC
Confidence 4433433322211 135899999999999999999888776665 3448999999998865211
Q ss_pred CCC-CC---------CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 256 NML-DL---------KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 256 ~~~-dl---------~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
.+. .+ ...+.-+++.||+|.|+ .+| +||++.++++++.+....
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~-~~GlRiG~ii~~~~~~~~~~~~~------------------------ 258 (374)
T PRK05839 204 TPPPSLLEASILVGNESFKNVLVINSISKRSS-APGLRSGFIAGDASILKKYKAYR------------------------ 258 (374)
T ss_pred CCCCCHhhhhcccCccccCcEEEEeccccccC-CccceeEEEecCHHHHHHHHHHH------------------------
Confidence 011 11 11234477889999998 447 899999877765542211
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
.......+.....++..++..-.......++..+.++++.+.| ++. .|. .+.++++++++
T Consensus 259 ~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l----------~~~--~p~-------gg~fi~~~~~~- 318 (374)
T PRK05839 259 TYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL----------GIT--IPP-------ATFYVWLPVDN- 318 (374)
T ss_pred hhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc----------CCC--CCC-------eeEEEEEeCCC-
Confidence 0111223334444443343211111001133334444333322 111 222 26677776642
Q ss_pred CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
. .++.+.| +++||.+.+|..+... +...+++|+|++. +.+
T Consensus 319 -~-----~~~~~~l~~~~gi~v~pg~~f~~~-------------------------------~~~~~~iRis~~~--~~~ 359 (374)
T PRK05839 319 -D-----EEFTKKLYQNEGIKVLPGSFLGRN-------------------------------GIGKGYVRIALVY--DTP 359 (374)
T ss_pred -h-----HHHHHHHHHHCCEEEeCchhhCCC-------------------------------CCCCCeEEEEecC--CHH
Confidence 1 1355555 5699999988654211 1114899999974 689
Q ss_pred HHHHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQYF 495 (815)
Q Consensus 483 di~~lv~~L~~~~ 495 (815)
++...++.|.+++
T Consensus 360 ~~~~~l~~l~~~l 372 (374)
T PRK05839 360 KLEKALEIIKTYL 372 (374)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=192.52 Aligned_cols=308 Identities=10% Similarity=0.006 Sum_probs=197.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
++++++++++++|.+ . +++++|+++|+.+++.++. ++|| ||++...|+...... ..+...| ...++..
T Consensus 67 ~~~Le~~lA~l~g~~--~--~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~--- 138 (394)
T PRK07050 67 SLALAQRLAEIEGGR--H--ALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPL--- 138 (394)
T ss_pred HHHHHHHHHHHhCCC--e--EEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCC---
Confidence 889999999999974 3 9999999999999999997 9999 888898888766533 3455556 3344322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ .+.++|++|++++++||+|.+.++++|.++|+ ++|+++++|++++.|... ....
T Consensus 139 ~~~~l~~-------~i~~~tklV~le~p~Np~~~~~di~~I~~ia~-----------~~gi~livD~a~a~~~~~-~~l~ 199 (394)
T PRK07050 139 IGAGIAD-------LIQPNTRLIWLEAPGSVTMEVPDVPAITAAAR-----------ARGVVTAIDNTYSAGLAF-KPFE 199 (394)
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCccHhhHHHHHHHHH-----------HcCCEEEEECCccccccc-CHHH
Confidence 1123333 34578999999999999999999999999999 899999999999887642 2224
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|++++..+ .|++++++ ++.++++... ....++.+....+.+.
T Consensus 200 ~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~------------------------~~~G~~~~~~~a~l~l 255 (394)
T PRK07050 200 HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLAR------------------------MRLGIGVSADDCSLVL 255 (394)
T ss_pred cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 5789999999999985544 46666644 4444442111 1112233333222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++ .+..++++..+.+..+.+.|++. |.+. ++.|.-.+ .....+++++|.+.+.... -.
T Consensus 256 r~l~---tl~~Rl~~~~~~a~~la~~L~~~------p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~-~~ 325 (394)
T PRK07050 256 RGLP---SLQVRLAAHDRSALEVAEWLKAR------PEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSP-AQ 325 (394)
T ss_pred cCCC---cHHHHHHHHHHHHHHHHHHHHhC------CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCH-HH
Confidence 2222 23234466677777788888776 3332 22221100 0123578899998642111 12
Q ss_pred HHHHHHhhhcCCcEeccCccCCch--hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPG--SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~--~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
...+.+.|+..++.++.|...+-- ....++... .. ...++.||+|+|..+.++-++.|
T Consensus 326 ~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~----------------~~----~~~~~~iR~svGlE~~~dl~~dl 385 (394)
T PRK07050 326 VDAFVEALELFAIGWSWGGACSLAMPYDVASMRTA----------------KW----PHRGTLVRLYIGLEDEADLIADL 385 (394)
T ss_pred HHHHHHcCCCCeeccccCCccceEeeCcccccchh----------------hc----CCCCCEEEEEeCcCCHHHHHHHH
Confidence 345777888888888877543311 000111110 00 13348999999998777777777
Q ss_pred HHHHHHHH
Q psy16512 488 LSFLNQYF 495 (815)
Q Consensus 488 v~~L~~~~ 495 (815)
.++|.+.+
T Consensus 386 ~~al~~~~ 393 (394)
T PRK07050 386 EQALEAAL 393 (394)
T ss_pred HHHHHHhh
Confidence 77777654
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=190.51 Aligned_cols=336 Identities=9% Similarity=0.016 Sum_probs=220.0
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++..-+... ..+.|... +.--+.......-+.++..++||++..+ +=..+++.|+..++.++. +
T Consensus 58 EN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~an---vqp~Sg~~An~~v~~all-~ 133 (493)
T PRK13580 58 ENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAY---VQPHSGADANLVAFWAIL-A 133 (493)
T ss_pred cccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCccc---ccCCCcHHHHHHHHHHHh-c
Confidence 4456777877776655543 23445444 2222221222345778888899998765 445666779999999998 5
Q ss_pred C-------------------------------Cc-EEEecCCC---cchhhHHHHhhc-cc--eEEcCc-hhhhcchhhh
Q psy16512 148 E-------------------------------GS-FIYLTDNH---TSVLGMRELVKT-NQ--IYSFSV-DDARNMLNEF 188 (815)
Q Consensus 148 ~-------------------------------gd-vv~~~~~h---~s~~~~~~~~~~-~g--~v~~~~-~~~~~~~~~~ 188 (815)
| || |+.....| -+.-....+... .. ..+++. ++.+|.+.++
T Consensus 134 ~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~ 213 (493)
T PRK13580 134 HKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIA 213 (493)
T ss_pred ccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHH
Confidence 4 67 55444332 221111111111 11 344553 4567888777
Q ss_pred hhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC------C
Q psy16512 189 KESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK------Q 262 (815)
Q Consensus 189 ~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~------~ 262 (815)
+.+ .++++++++++.+|..+ ..|+++|.++|+ ++|+++++|++|++|....+.. .
T Consensus 214 ~~~-------~~~~plvii~g~S~~~~-~~dl~~i~eia~-----------~~gA~L~VD~AH~~Gligg~~~~~~~~~~ 274 (493)
T PRK13580 214 ALA-------REFKPLILVAGYSAYPR-RVNFAKLREIAD-----------EVGAVLMVDMAHFAGLVAGKVFTGDEDPV 274 (493)
T ss_pred HHH-------hhcCCEEEEeCccccCC-CcCHHHHHHHHH-----------HcCCEEEEECchhhceeccccchhhcCCC
Confidence 644 36788999999999954 779999999999 8999999999999998764441 1
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
.++|++++|+||+|++|.| |++++++++++.+... ..+..|++..+.++++..++
T Consensus 275 ~~~D~vtgT~hKaL~GP~G-G~I~~~~~l~~~L~~a------------------------~P~i~gg~l~p~iAA~avAl 329 (493)
T PRK13580 275 PHADIVTTTTHKTLRGPRG-GLVLAKKEYADAVDKG------------------------CPLVLGGPLPHVMAAKAVAL 329 (493)
T ss_pred CCCcEEEeCChhhccCCCe-EEEEecHHHHHHHhhC------------------------CCcccCCCccHHHHHHHHHH
Confidence 2689999999999955986 9999998876655210 01222344555677666677
Q ss_pred HHHHhhh-hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 343 DTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 343 ~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
..+.... ..+ +++.+++++|.+.|.+. |+.++... ...+++.+.+.+.. .....+.+.|.+.
T Consensus 330 ~e~~~~ef~~y~~~l~~Na~~La~~L~~~-------G~~vv~gg------TdshIV~V~lg~~~---~~g~~a~~~L~e~ 393 (493)
T PRK13580 330 AEARTPEFQKYAQQVVDNARALAEGFLKR-------GARLVTGG------TDNHLVLIDVTSFG---LTGRQAESALLDA 393 (493)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHhc-------CCCccCCC------CCCCEEEEEeCCHH---HHHHHHHHHHHHC
Confidence 6664322 223 89999999999999987 77776321 12688888886432 1122477789999
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~ 496 (815)
||.+..-.....+.. ......|||++...+ +++|+++++++|.+++.
T Consensus 394 GI~vn~i~~Ptvp~g-----------------------------~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~ 444 (493)
T PRK13580 394 GIVTNRNSIPSDPNG-----------------------------AWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS 444 (493)
T ss_pred CeEEccccCCCCCCC-----------------------------CCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH
Confidence 999875432211100 011367999988744 59999999999999886
Q ss_pred hc
Q psy16512 497 QQ 498 (815)
Q Consensus 497 ~~ 498 (815)
+.
T Consensus 445 ~~ 446 (493)
T PRK13580 445 NT 446 (493)
T ss_pred hh
Confidence 54
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=195.99 Aligned_cols=316 Identities=12% Similarity=0.040 Sum_probs=200.8
Q ss_pred HHHHHHHHHhHcCCCCCc-----eeEEecCCchhhHHHHHhhhcc----C-----CCc--EEEecCCCcchhhHHHHhhc
Q psy16512 107 IDQMRTKILQYFNTDSDH-----YSVIFTSGATSAIKTVSEYFEF----N-----EGS--FIYLTDNHTSVLGMRELVKT 170 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~-----~~iv~t~g~t~al~~~~~al~~----~-----~gd--vv~~~~~h~s~~~~~~~~~~ 170 (815)
..++-+++++++|.+.+. -..++|+|+|+|+..++.+... . ... ++++...|.|+.....+++-
T Consensus 124 E~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGl 203 (490)
T PLN02880 124 EMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGI 203 (490)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCC
Confidence 668999999999987531 1268999999998777766541 0 123 44566789998777776654
Q ss_pred cc----eEEcCc--hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeE
Q psy16512 171 NQ----IYSFSV--DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCF 244 (815)
Q Consensus 171 ~g----~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~ 244 (815)
.. .+|++. +..++++.++++|.+..+ ....+.+|+.+..++.||.+.|+++|+++|+ ++|+|
T Consensus 204 g~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~-~g~~p~~vvataGTT~~GaiDpl~eI~~i~~-----------~~~iw 271 (490)
T PLN02880 204 HPENCRLLKTDSSTNYALAPELLSEAISTDLS-SGLIPFFLCATVGTTSSTAVDPLLELGKIAK-----------SNGMW 271 (490)
T ss_pred CHHHEEEeecCCCcCCcCCHHHHHHHHHHHHH-CCCccEEEEEecCCCcCcccCcHHHHHHHHH-----------HcCCE
Confidence 21 567764 347899988886652221 1234788999999999999999999999999 89999
Q ss_pred EEEecccccCCCCC-----CCCC-CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEE-------EecC
Q psy16512 245 VLLDAATYCGSNML-----DLKQ-HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKI-------SMAN 311 (815)
Q Consensus 245 vivD~a~~~g~~~~-----dl~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~-------~~~~ 311 (815)
+|||+|++.+.... .+.. ..+|+++.++|||++.|.|+|++++++... .+++......+... ..++
T Consensus 272 lHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~-l~~~~~~~~~Yl~~~~~~~~~~~~~ 350 (490)
T PLN02880 272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNA-LIQSLSTNPEFLKNKASQANSVVDY 350 (490)
T ss_pred EEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHH-HHHHHccCHHHhcCccccccCCCCh
Confidence 99999998775432 1333 368999999999999999999999996321 11111111111000 0000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
..|. .+.|.. +- .+.+...++.+-..+ ...++..++++++.+.|++. |+++++.+..
T Consensus 351 ~~~~---------i~~~rr-~~-alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~------~~~el~~~~~---- 409 (490)
T PLN02880 351 KDWQ---------IPLGRR-FR-SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD------SRFEVVTPRI---- 409 (490)
T ss_pred hccC---------cCCCCc-cc-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc----
Confidence 0010 111111 11 123333343332211 11166669999999999887 7899997754
Q ss_pred CcccceEEEEEecCCCCc--cC--HHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 390 KYQGNIVNFNLLHKDGTY--YG--YSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~--~~--~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
.++++|+++...... .+ -..+.+.|.+ ..+.+.... .+
T Consensus 410 ---~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t~----------------------------------~~ 452 (490)
T PLN02880 410 ---FSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTV----------------------------------LS 452 (490)
T ss_pred ---eEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEEE----------------------------------EC
Confidence 689999987421110 00 0123333333 334443211 11
Q ss_pred CCCceEEEEeccCCCC-HHHHHHHHHHHHHHH
Q psy16512 465 GKPTGSIRISYGHASN-WDDVKYFLSFLNQYF 495 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t-~edi~~lv~~L~~~~ 495 (815)
| ..++|++++.++| .+|++++++.|.++.
T Consensus 453 g--~~~lR~~~~n~~tt~~di~~~~~~i~~~~ 482 (490)
T PLN02880 453 G--KYVLRFAVGAPLTEERHVTAAWKVLQDEA 482 (490)
T ss_pred C--EEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 2 2689999987765 599999999998864
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=194.64 Aligned_cols=289 Identities=16% Similarity=0.107 Sum_probs=194.8
Q ss_pred HHHHHHHHHhHcC------CCCC-ceeEEecCCchhhHHHHHhhh-ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYFN------TDSD-HYSVIFTSGATSAIKTVSEYF-EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~-~~~iv~t~g~t~al~~~~~al-~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.++++++ .+++ + |++++|+.+++..+...+ . .+|+ +++..+.|+.+....+..+... .+++
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~--i~~~~G~~~~~~~~~~~~~~-~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~ 122 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPEAN--ILVTSGAQAALFLLLRLLKI-NPGDTVLVPDPCYPSYIEAARLLGAEVIPVPL 122 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGGEG--EEEESHHHHHHHHHHHHHHS-STTSEEEEEESSSTHHHHHHHHTTSEEEEEEE
T ss_pred hHHHHHHHHHHhhhccCcccccceE--EEEecccccchhhhhhcccc-cccccceecCCccccccccccccCceeeeccc
Confidence 7789999999998 6666 5 999999999999888888 5 7888 8888988888776666554443 4443
Q ss_pred C--chhhhcchhhhhhhhhhhhhcCC--CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 177 S--VDDARNMLNEFKESQENVENMRH--SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 177 ~--~~~~~~~~~~~~~l~~~~~~~~~--~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
+ .+...+++.+++.++ +...+ ++++|++++++||||..++.+++.++++ .|+++++++++|+++.
T Consensus 123 ~~~~~~~~d~~~l~~~l~---~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~--------~~~~~~~~ii~De~y~ 191 (363)
T PF00155_consen 123 DSENDFHLDPEALEEALD---ELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAE--------LAREYNIIIIVDEAYS 191 (363)
T ss_dssp EETTTTEETHHHHHHHHH---TSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHH--------HHHHTTSEEEEEETTT
T ss_pred cccccccccccccccccc---cccccccccceeeecccccccccccccccccchhh--------hhcccccceeeeecee
Confidence 3 344567777776553 11111 4789999999999999999998888844 2338999999999987
Q ss_pred cCCCC--------CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 253 CGSNM--------LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 253 ~g~~~--------~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
..... ..+......+++.|++|.|| .+| +|++++++++++.++....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g-~~GlRvG~i~~~~~~~~~l~~~~~---------------------- 248 (363)
T PF00155_consen 192 DLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFG-LPGLRVGYIVAPPELIERLRRFQR---------------------- 248 (363)
T ss_dssp TGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTT-SGGGTEEEEEEEHHHHHHHHHHHH----------------------
T ss_pred ccccCCCccCcccccccccccceeeeecccccc-ccccccccccchhhhhhhhhhccc----------------------
Confidence 64322 11112122488889999999 447 8999998877765532211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEK----KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~----~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
.+..+.....++...+..... .....++.++.++++.+.|++. ++.++.+.. +.+++.
T Consensus 249 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~ 310 (363)
T PF00155_consen 249 ----SGLSSSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-------GITVLPPEA-------GFFLWV 310 (363)
T ss_dssp ----HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSEEEHHSB-------SSEEEE
T ss_pred ----cccccchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-------hhheeeccC-------ccEEEE
Confidence 112244444444444443331 2122278888888999999886 677775432 444444
Q ss_pred EEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
.+... +..++.+.|.++ ||.+.+|..+.. .+++|+++ .
T Consensus 311 ~~~~~-----~~~~l~~~L~~~~gi~v~pg~~~~~-----------------------------------~~~iRi~~-a 349 (363)
T PF00155_consen 311 RLDPN-----DAEELAQELLEEYGILVRPGSYFGV-----------------------------------PGYIRISL-A 349 (363)
T ss_dssp EESHH-----HHHHHHHHHHHHHTEEEEEGGGGTS-----------------------------------TTEEEEEG-G
T ss_pred Ecccc-----hHHHHHHHHHHhCCEEEEecCCCCC-----------------------------------CCEEEEEe-c
Confidence 44432 123466666665 999998764322 37999999 5
Q ss_pred CCCHHHHHHHHHHH
Q psy16512 478 ASNWDDVKYFLSFL 491 (815)
Q Consensus 478 ~~t~edi~~lv~~L 491 (815)
..+++++++++++|
T Consensus 350 ~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 350 SHSEEDLEEALERL 363 (363)
T ss_dssp CSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhC
Confidence 56999999999876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=184.73 Aligned_cols=315 Identities=13% Similarity=0.080 Sum_probs=217.5
Q ss_pred hhHHHHHHHHhhccccCCCChh----hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC--CC
Q psy16512 76 SQMNQTIEQLKENIFSHPHGNS----VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN--EG 149 (815)
Q Consensus 76 ~v~~al~~~l~~~~~~np~s~~----~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~--~g 149 (815)
..+.++.... .+..++|.... .+.++ ..++-+++++++|.+++++.-++|+|+|+++..++.+.... .+
T Consensus 105 s~l~~~l~~~-~nN~Gdp~~~s~~~~~s~~~----E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~ 179 (470)
T PLN02263 105 GALGQLQHFS-INNLGDPFIESNYGVHSRQF----EVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDG 179 (470)
T ss_pred hhHHHHHHhh-ccCCCCccccCCcchhHHHH----HHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCc
Confidence 3444444332 23355665543 34444 67899999999999876556799999999999988887632 22
Q ss_pred cEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 150 SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 150 dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
-++++...|.|+.....+++-.- .+|++.++.++++.++++|. + -..++.+|+.+..++++|.+.|+++|+++|+
T Consensus 180 vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~---~-d~~~P~iVvataGTT~~GAiDpi~eIa~i~~ 255 (470)
T PLN02263 180 ILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLL---A-NKDKPAIINVNIGTTVKGAVDDLDLVIKTLE 255 (470)
T ss_pred EEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHH---h-CCCCcEEEEEEecCCCCcCCCCHHHHHHHHH
Confidence 37778889999987777665433 77888888899999987664 1 1124678889999999999999999999999
Q ss_pred ccccccccccCCCCe-----EEEEecccccCCCC-------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccC
Q psy16512 229 NHVFKKHFKCSRSNC-----FVLLDAATYCGSNM-------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi-----~vivD~a~~~g~~~-------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~ 296 (815)
++|+ |+|||||.+....| +++.. ++|.++.++|||++.|.++|++++++...+.+.
T Consensus 256 -----------~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~ 323 (470)
T PLN02263 256 -----------ECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINVLS 323 (470)
T ss_pred -----------HcCCccCCeeEEEeccchhhHhhhcccccccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhhhc
Confidence 6675 99999997654432 34332 489999999999999999999999976543221
Q ss_pred --cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhcccc
Q psy16512 297 --KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 297 --~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.|+... ..-..|+.+....+.+...+..+...|.. .++..++++++.+.|++.
T Consensus 324 ~~~~Yl~~~-------------------d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~--- 381 (470)
T PLN02263 324 SNVEYLASR-------------------DATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA--- 381 (470)
T ss_pred cChHhhCCC-------------------CCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 1111110 01123555555556666667665544322 288899999999999987
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++++.... .+++.|..+.. ....+|..+..-
T Consensus 382 ----g~~~~~~p~-------s~~V~f~~p~~------------~~~~~gW~L~~~------------------------- 413 (470)
T PLN02263 382 ----GISAMLNEL-------SSTVVFERPKD------------EEFVRRWQLACQ------------------------- 413 (470)
T ss_pred ----CCeEEeCCC-------ceEEEEecCch------------HHhhcceEEccC-------------------------
Confidence 455443322 57777764321 012356655420
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.+++.+....+.+.+|.|++.|++...
T Consensus 414 ---------------~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 414 ---------------GNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred ---------------CCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 14689998887889999999999988654
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=192.09 Aligned_cols=318 Identities=12% Similarity=0.022 Sum_probs=203.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCch------
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVD------ 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~------ 179 (815)
+.++|++++++++.+. +++|+|+++|+.+++.++. ++||+|++...++++......++... .+++++.
T Consensus 80 ~~~Lreaia~~~~~~~----vv~t~ggt~A~~~~~~all-~pGDVii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~ 154 (460)
T PRK13238 80 YYRLEDAVKDIFGYPY----TIPTHQGRAAEQILFPVLI-KKGDVVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSR 154 (460)
T ss_pred HHHHHHHHHHHhCCCc----EEECCCHHHHHHHHHHHhC-CCCCEEccCCcccchHHHHHHcCCEEEEEecccccccccc
Confidence 8899999999999743 8999999999999999997 99996666665666655555544433 5555431
Q ss_pred ----hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc-cccChH---HHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 180 ----DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG-TKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 180 ----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG-~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+.++++.++++++ +...++|++|++++++|||| .+++.+ +|.++|+ +||+++|+|+++
T Consensus 155 ~~f~g~id~e~Le~~i~---~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~-----------~~gi~li~Daa~ 220 (460)
T PRK13238 155 HPFKGNFDLEKLEALIE---EVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAK-----------KYGIPVVIDAAR 220 (460)
T ss_pred ccccCCcCHHHHHHHHh---hcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEECcc
Confidence 2367777776543 11114699999999999998 888765 5666676 899999999988
Q ss_pred ccC-----------CCCCCCCC------CCCcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCc
Q psy16512 252 YCG-----------SNMLDLKQ------HQPDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 252 ~~g-----------~~~~dl~~------~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
..+ ....++.. ...|++++|++|.+.+|.| |+++.++ +++++++.......
T Consensus 221 ~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~---------- 289 (460)
T PRK13238 221 FAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYE---------- 289 (460)
T ss_pred hhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccC----------
Confidence 542 12222211 1379999999997765766 7887774 56665543321100
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcc
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQ 392 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~ 392 (815)
.....|..+...+.|+..++..... ... ++..+.+++|.+.|.+. |+.+..|.+
T Consensus 290 ---------g~~t~~g~~~~~~~Ala~~l~e~~~--~~~~~~~~~~~~~l~~~L~~~-------G~~~~~p~G------- 344 (460)
T PRK13238 290 ---------GFPTYGGLAGRDMEALAVGLYEGMD--EDYLAYRIGQVEYLGEGLEEA-------GVPIQTPAG------- 344 (460)
T ss_pred ---------CcccccCcHHHHHHHHHhhHHHhhC--hHHHHHHHHHHHHHHHHHHHC-------CCCeEccCC-------
Confidence 0112344455556666666653222 122 44444678999999886 777777764
Q ss_pred cceEEEEEecC----CCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 393 GNIVNFNLLHK----DGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 393 ~~i~~f~~~~~----~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+..+..++... ..... +.....+++.+.||.+.++..+..+... ..|. .. -..
T Consensus 345 g~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~-~~~~-----------------~~----~~~ 402 (460)
T PRK13238 345 GHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDP-KTGE-----------------QL----PAP 402 (460)
T ss_pred ceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCC-CCcc-----------------cc----CCc
Confidence 56666665432 11112 2334667779999999776543322110 0000 00 011
Q ss_pred ceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 468 TGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 468 ~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
...+|+++.-- -|.+++++++++|.++.......
T Consensus 403 ~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~~~ 437 (460)
T PRK13238 403 AELLRLAIPRRVYTQSHMDYVAEALKAVKENRESI 437 (460)
T ss_pred cceEEEecccccCCHHHHHHHHHHHHHHHHhHhhc
Confidence 37899998731 17899999999999977544443
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=186.15 Aligned_cols=336 Identities=13% Similarity=0.050 Sum_probs=200.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~ 183 (815)
..++++++++++|++. +++++|+|+|+.+++.++..++|| ||++..+|++...+....+... .++++.+. .++
T Consensus 35 ~~~le~~la~~~g~~~----~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~~~~d 110 (379)
T PRK11658 35 NQALEQAFCQLTGNQH----AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDTLMVT 110 (379)
T ss_pred HHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence 8899999999999853 788899999999999998448999 8898988888765554433222 56666544 356
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC--CCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML--DLK 261 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~--dl~ 261 (815)
++.+++++ +++|++|+. .|++|...|+++|.++|+ ++|+++|+|++++.|.... .+.
T Consensus 111 ~~~l~~~i-------~~~tkav~~---~~~~G~~~d~~~i~~~a~-----------~~gi~vi~D~a~a~g~~~~~~~~g 169 (379)
T PRK11658 111 PEAIEAAI-------TPRTKAIIP---VHYAGAPADLDAIRAIGE-----------RYGIPVIEDAAHAVGTYYKGRHIG 169 (379)
T ss_pred HHHHHHhc-------ccCCeEEEE---eCCCCCcCCHHHHHHHHH-----------HcCCeEEEECCCccCCeECCeecC
Confidence 77766543 467898874 457999999999999999 8999999999999886543 244
Q ss_pred CCCCcEEEEccccccccCCcceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCC-ChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV-NYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~-~~~~~~al~ 339 (815)
..+.+++.++.+|.+.++. .|+++.+ +++.+++++....|..... +..+..........+..|+. ....+. +.
T Consensus 170 ~~g~~~~Sf~~~K~l~~g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~---~~~~~~~~~~~~~~~~~G~n~~~~~l~-AA 244 (379)
T PRK11658 170 ARGTAIFSFHAIKNITCAE-GGLVVTDDDELADRLRSLKFHGLGVDA---FDRQTQGRAPQAEVLTPGYKYNLADIN-AA 244 (379)
T ss_pred CCCCEEEeCCCCCcCcccC-ceEEEECCHHHHHHHHHHHHcCCCcch---hhhhcccCCCcceeeccccccCcCHHH-HH
Confidence 4555555555667665332 3555554 4566666543322221110 00000000000112233432 222222 22
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
.++..+.++....++.+++++++.+.|+++ +...+..+... ......++.+.+... ...++.+++.+.|.+
T Consensus 245 l~~~ql~~l~~~~~~r~~~a~~~~~~L~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~r~~~~~~L~~ 315 (379)
T PRK11658 245 IALVQLAKLEALNARRREIAARYLQALADL------PFQPLSLPAWP--HQHAWHLFIIRVDEE-RCGISRDALMEALKE 315 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCccCcCCCCC--CceeEEEEEEEECCc-cccCCHHHHHHHHHH
Confidence 233334444344488889999999999877 43323222210 011123445555321 111345678999999
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+||.++. +|.+.+.++++. .... .......+......+.+.++...+++|+++++++|++++
T Consensus 316 ~gI~~~~--~~~~~~~~~~~~-----------~~~~-~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 316 RGIGTGL--HFRAAHTQKYYR-----------ERFP-TLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred CCCCCcc--cCcCcccChhhh-----------ccCC-CCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence 9998654 333333222111 0000 000111122224678888998889999999999999865
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=185.82 Aligned_cols=344 Identities=12% Similarity=0.130 Sum_probs=206.4
Q ss_pred hhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+.+.++..+.+.....+...+. +..... ..++++++++++|.+. . ++|++|.+ |+..++.++. ++|| |
T Consensus 15 ~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~----~~~LE~~lA~~~g~e~-a--l~~~sG~~-a~~~~i~~l~-~~GD~V 85 (392)
T PLN03227 15 PTLRQTALESLSHYGCGSCGPRGFYGTIDA----HLELEQCMAEFLGTES-A--ILYSDGAS-TTSSTVAAFA-KRGDLL 85 (392)
T ss_pred HHHHHHHHHHHHHhCCCCcccccccCChHH----HHHHHHHHHHHhCCCc-E--EEecCcHH-HHHHHHHHhC-CCCCEE
Confidence 4566666665544222222111 222334 8899999999999863 2 77777766 4457777776 9999 8
Q ss_pred EEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhh----hhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQEN----VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~----~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
++....|+++.......+ .....+...+..+.+...+.+..- +....+++++|+++.+.|++|.+.|+++|.++|
T Consensus 86 l~~~~~h~s~~~~~~l~~-~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~ 164 (392)
T PLN03227 86 VVDRGVNEALLVGVSLSR-ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALK 164 (392)
T ss_pred EEeccccHHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHH
Confidence 888899998866543332 122223322222222222211100 000134689999999999999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCC---------CCC-CCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLK-QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~-~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
+ ++|+++++|++|++|..-. ++. ..++|+++.|++|.+| |.| |+++.++++++.++.
T Consensus 165 ~-----------~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~g-g~v~~~~~~~~~~~~ 231 (392)
T PLN03227 165 E-----------EFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVG-GMTVGSEEVVDHQRL 231 (392)
T ss_pred H-----------HcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccC-cEEecCHHHHHHHHH
Confidence 9 8999999999998654211 111 2356999999999988 643 667777766543321
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccC--C-
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSN--G- 374 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~--~- 374 (815)
. +.+ ....++.+.....+..+++..+.......++.+++.+++.+.|++..++. .
T Consensus 232 ~--~~~--------------------~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~ 289 (392)
T PLN03227 232 S--GSG--------------------YCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKL 289 (392)
T ss_pred h--CcC--------------------ccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 1 100 01123333334444445554433322223888999999999997642210 0
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-----cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-----YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-----~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
..+..+.. ...++++.+.+.+..... .....+.+.+.++||.+.....+ +...
T Consensus 290 rg~~~~~~-------~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~-~~~~-------------- 347 (392)
T PLN03227 290 RNRLVITS-------DPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGH-VKKF-------------- 347 (392)
T ss_pred ccccccCC-------CCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccc-cCCc--------------
Confidence 00111111 123788888885421100 00125778888999988642110 0000
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
....++..||++++..+|+|||++++++|++++.+-
T Consensus 348 -------------~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 348 -------------LQLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred -------------CCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 001334789999999999999999999999987553
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-18 Score=188.02 Aligned_cols=336 Identities=12% Similarity=0.104 Sum_probs=209.4
Q ss_pred hcccccchhhHHHHHHHHhhcc-ccCCCChh-hhhhhhhhhHHHHHH----HHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENI-FSHPHGNS-VLSDFCVSEIDQMRT----KILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~-~~np~s~~-~~~~~~~~~~~~~r~----~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++...+++.+.+++...+...+ .+.+.+.. .-.+. ++++++ ++++++|.+.. ++++++++.|+..++
T Consensus 35 ~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~----~~~lE~~~~~~la~l~g~~~a---lv~~~SG~~A~~~~l 107 (416)
T PRK13034 35 ASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEF----VDEVEALAIERAKQLFGCDYA---NVQPHSGSQANGAVY 107 (416)
T ss_pred ccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChH----HHHHHHHHHHHHHHHhCCCce---EEecCCcHHHHHHHH
Confidence 3455568899988887753322 22232221 11222 445555 99999998642 466788899999999
Q ss_pred hhhccCCCc-EEEecCCCcchhh-HHHHhhccc-e---EEcCc---hhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ-I---YSFSV---DDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g-~---v~~~~---~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
.++. ++|| |++....|.+.+. ..... ..+ . ...+. ....+++++++.+. ..++++|++.+.
T Consensus 108 ~al~-~~GD~Vl~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~------~~~~klVi~~~~-- 177 (416)
T PRK13034 108 LALL-KPGDTILGMSLSHGGHLTHGAKVS-LSGKWYNAVQYGVDRLTGLIDYDEVEELAK------EHKPKLIIAGFS-- 177 (416)
T ss_pred HHhc-CCCCEEEEcCccceeeeecCCcce-eccceeeeEEcccccccCCcCHHHHHHHHh------hcCCeEEEECCC--
Confidence 9997 9999 8888888877321 11110 011 1 22222 23466666665442 135788887543
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---CCCCcEEEEccccccccCCcceEEEEec
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK---QHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~---~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
.+|...|+++|.++|+ ++|+++++|++|++|....... ...+|++++|+||++++|.| |+++.++
T Consensus 178 ~~g~~~dl~~l~~la~-----------~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~ 245 (416)
T PRK13034 178 AYPRELDFARFREIAD-----------EVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTND 245 (416)
T ss_pred ccccccCHHHHHHHHH-----------HcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECc
Confidence 3688889999999999 8999999999999887533221 12489999999999976876 6666665
Q ss_pred ccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhh-HHHHHHHHHHHHHHH
Q psy16512 290 KSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKS-FTNAFELSQYTYFYF 366 (815)
Q Consensus 290 ~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~-~~~~~~l~~~l~~~L 366 (815)
+.+ +.++...+.+ +. ++.+.+.++++..++..+. ..... .++..++++++++.|
T Consensus 246 ~~~~~~~~~~~~~~----------------------~~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L 302 (416)
T PRK13034 246 EEIAKKINSAVFPG----------------------LQ-GGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVL 302 (416)
T ss_pred HHHHHHHHhhcCCc----------------------cc-CCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 433 3333222111 01 1233344444444444432 21122 388999999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
.++ |+.+..+. ...+++.+.+.+.. .....+.+.|.++||.+..-.... .
T Consensus 303 ~~~-------G~~~~~~~------~~t~i~~v~~~~~~---~~~~~~~~~L~~~GI~v~~~~~p~---~----------- 352 (416)
T PRK13034 303 KER-------GYDLVSGG------TDNHLLLVDLRPKG---LSGKDAEQALERAGITVNKNTVPG---D----------- 352 (416)
T ss_pred HHc-------CCEeccCC------CCCcEEEEEcCCCC---CCHHHHHHHHHhCCcEEeccCCCC---C-----------
Confidence 887 67776431 12577777665432 123346688899999986421100 0
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccC----CCCHHHHHHHHHHHHHHHhhcCc
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGH----ASNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~----~~t~edi~~lv~~L~~~~~~~~~ 500 (815)
+..-..+..+|+|++. ..+++|+++++++|.+++.+..+
T Consensus 353 ---------------~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~~~ 395 (416)
T PRK13034 353 ---------------TESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDLGN 395 (416)
T ss_pred ---------------CcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 0000013579999888 55699999999999999876543
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=191.28 Aligned_cols=347 Identities=12% Similarity=0.107 Sum_probs=219.8
Q ss_pred cccccchhhHHHHHHHHh-hccccCCCChhhh-hhhhhhhHH-HHHHHHHhHcCCCCCceeEEe---cCCchhhHHHHHh
Q psy16512 69 GAGVYSQSQMNQTIEQLK-ENIFSHPHGNSVL-SDFCVSEID-QMRTKILQYFNTDSDHYSVIF---TSGATSAIKTVSE 142 (815)
Q Consensus 69 ~~~~~p~~v~~al~~~l~-~~~~~np~s~~~~-~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~---t~g~t~al~~~~~ 142 (815)
+....++.+.+++...+. ....+.|.+.+.. ... ..+++ -++++.+++|++..+. +.+ ..+++.|+..++.
T Consensus 42 sen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~-~d~lE~~~~~~~~~~f~~~~~~--~~~nv~~~SG~~AN~av~~ 118 (475)
T PLN03226 42 SENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEY-IDQIETLCQKRALEAFRLDPEK--WGVNVQPLSGSPANFAVYT 118 (475)
T ss_pred CCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChh-HHHHHHHHHHHHHHHhCCCcce--eEEecCcCchHHHHHHHHH
Confidence 345677888888877773 3334455544211 122 12233 3566788899988765 333 3677889999999
Q ss_pred hhccCCCc-EEEecC------CCcchhhHHHHhhccc-e---EEc--C-chhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 143 YFEFNEGS-FIYLTD------NHTSVLGMRELVKTNQ-I---YSF--S-VDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 143 al~~~~gd-vv~~~~------~h~s~~~~~~~~~~~g-~---v~~--~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
++. ++|| |+..+. .|.+....... ...+ . ++. + .++.+|.+.+++++. ..++++|++.
T Consensus 119 aL~-~pgD~Il~~d~~~gGhl~H~~~~~g~~~-s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~------~~~pklIv~~ 190 (475)
T PLN03226 119 ALL-QPHDRIMGLDLPHGGHLSHGYQTDGKKI-SATSIYFESMPYRLDESTGLIDYDKLEKKAM------LFRPKLIIAG 190 (475)
T ss_pred HhC-CCCCEEEECCCCcCcchhhhhhhccccc-ccceEEEEeeeeeecCCCCCcCHHHHHHHHh------hcCCeEEEEe
Confidence 998 9999 554342 23222111111 1112 1 122 2 345678888876543 2356766653
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC---CCCcEEEEccccccccCCcceEE
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ---HQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~---~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
. +.+|...|+++|.++|+ ++|+++++|++|.+|....+... .++|++++|+|||+++|.| |++
T Consensus 191 -~-S~~s~~~D~a~i~~ia~-----------~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I 256 (475)
T PLN03226 191 -A-SAYPRDWDYARMRKIAD-----------KVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMI 256 (475)
T ss_pred -c-CcCCCccCHHHHHHHHH-----------HcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEE
Confidence 2 34789999999999999 89999999999999987655422 2689999999999966998 888
Q ss_pred EEecccccccCcccccCceEEEEecCCcc--cccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENF--HIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQY 361 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~ 361 (815)
+++++..+.++ ++ ... +..+ ..... ....+ .|+++...++++.++++++...+. .+ +++.+++++
T Consensus 257 ~~~~~~~~~~~----~g-~~~----~~d~~~~i~~a-~~~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~ 325 (475)
T PLN03226 257 FFRKGPKPPKG----QG-EGA----VYDYEDKINFA-VFPGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAA 325 (475)
T ss_pred EEchhhccccc----CC-Ccc----HHHHHHHhccc-cCCcc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 88877643322 11 000 0001 00000 01123 456889999999999999876643 23 999999999
Q ss_pred HHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCC
Q psy16512 362 TYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
|.+.|.+. |+.++.+.. ..+++.+.+... .++..++.+.|.+.||.+..+..... . +
T Consensus 326 L~~~L~~~-------G~~l~~~~t------~~hi~lv~~~~~---gi~~~~~~~~L~~~~I~~nk~~~p~~--~-~---- 382 (475)
T PLN03226 326 LANRLMSK-------GYKLVTGGT------DNHLVLWDLRPL---GLTGSRVEKVLDLAHITLNKNAVPGD--S-S---- 382 (475)
T ss_pred HHHHHHhC-------CCEEEcCCC------CCCEEEEEccCC---CCCHHHHHHHHHHCCCEECCCCCCCC--c-c----
Confidence 99999886 888886532 145666655321 13445688999999999876542111 0 0
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEe----ccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS----YGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs----~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+..||++ .....+++|++++.+.|.+++..
T Consensus 383 -----------------------~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 383 -----------------------ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred -----------------------cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 0112457762 33345789999999999998764
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=193.31 Aligned_cols=303 Identities=12% Similarity=0.084 Sum_probs=187.3
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHh-hccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELV-KTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~-~~~g-~v~~~ 177 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++. +. .+|| |++..+.|+.+....... +... .++++
T Consensus 75 ~~~LReaia~~~~~~~g~~~~~~~--I~it~G~~~al~~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~ 150 (433)
T PRK06855 75 VLETREFLAELNNKRGGAQITPDD--IIFFNGLGDAIAKIYG-LL-RREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLD 150 (433)
T ss_pred CHHHHHHHHHHHHhccCCCCCHhH--EEEcCcHHHHHHHHHH-hc-CCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecc
Confidence 667888888876 3 55665 9999999999999885 55 8999 888888887643221211 1111 44555
Q ss_pred chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--
Q psy16512 178 VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-- 253 (815)
Q Consensus 178 ~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-- 253 (815)
+++ ..+++.++++++ ..++++++++++|+||||.+++.+++.++++ +|+++++++|+|+++.-
T Consensus 151 ~~~~~~~d~~~l~~~~~-----~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~--------~a~~~~~~II~De~Y~~l~ 217 (433)
T PRK06855 151 PENNWYPDLDDLENKVK-----YNPSIAGILLINPDNPTGAVYPKEILREIVD--------IAREYDLFIICDEIYNNIV 217 (433)
T ss_pred cccCCCCCHHHHHHHHh-----cCCCceEEEEECCCCCCCcCCCHHHHHHHHH--------HHHHcCCEEEEeccccccc
Confidence 432 356677665432 1245799999999999999999888766655 44489999999988642
Q ss_pred --CCCCCCCCCC---CCcEEEEccccccccCCc--ceEEEEec----cc-ccccCcccccCceEEEEecCCcccccccCc
Q psy16512 254 --GSNMLDLKQH---QPDFISISFYKMFGYPTG--LGALIVKQ----KS-AHVLNKTFYGGGTVKISMANENFHIKKDGL 321 (815)
Q Consensus 254 --g~~~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~~----~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (815)
+..+..+... ...+++.||+|.|+ .+| +||+++++ .. .+.++... .
T Consensus 218 ~~~~~~~sl~~~~~~~~~I~~~S~SK~~~-~pGlRiG~ii~p~~~~~~~~~~~~~~~~-~-------------------- 275 (433)
T PRK06855 218 YNGKKTVPLSEVIGDVPGIALKGISKELP-WPGSRCGWIEVYNADKDEVFKKYINSIL-N-------------------- 275 (433)
T ss_pred cCCCCCCCHHHHcCcCCeEEEecCccccC-CCcceEEEEEEeCCchhhHHHHHHHHHH-H--------------------
Confidence 1111222111 13488899999998 447 89999842 11 11111000 0
Q ss_pred cccccCCCCChhHHHHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 322 FEKFEDGTVNYLAIISLKYGFDTM--EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 322 ~~~~~~gt~~~~~~~al~~al~~l--~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
.......++.+...++..+++.- ...-.. .+.+++.++.+.+.|+++ +++.+..|.+ +.++++
T Consensus 276 -~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~------~~~~~~~p~g-------g~~~w~ 341 (433)
T PRK06855 276 -AKMIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDV------PGLKVNRTNG-------AFYMTV 341 (433)
T ss_pred -hhccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeeccCCCe-------eEEEee
Confidence 00011123445555555555321 111111 256677777788888766 5666655543 566777
Q ss_pred EEecCC-----CCc-------------------cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 399 NLLHKD-----GTY-------------------YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 399 ~~~~~~-----~~~-------------------~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
.++... +.. -+...+..++.++||.+.+|..+...
T Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~--------------------- 400 (433)
T PRK06855 342 VFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTE--------------------- 400 (433)
T ss_pred ccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCC---------------------
Confidence 776421 000 01122445678899999998765311
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+|+|+... ++++++..++.|.+++.+
T Consensus 401 -------------~~~~Rls~~~~-~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 401 -------------LNGFRVTLLER-DEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred -------------CCceEEEECCC-cHHHHHHHHHHHHHHHHH
Confidence 13499999864 689999999999988754
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=191.41 Aligned_cols=311 Identities=9% Similarity=0.111 Sum_probs=188.5
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~ 148 (815)
.+.+++.+.+++.+..... .|+ | ... ..++++.|++++|.++ +++++|+++++.+++.++. .+
T Consensus 9 ~~~p~~~~~~a~~~~~~~~~~Y~-~------~~~----~~~L~~~la~~~g~~~----~~v~~~g~~a~~~~l~~~~-~~ 72 (333)
T PRK10534 9 VTRPSRAMLEAMMAAPVGDDVYG-D------DPT----VNALQDYAAELSGKEA----ALFLPTGTQANLVALLSHC-ER 72 (333)
T ss_pred CCCCCHHHHHHHHhccCCCcccC-C------CHH----HHHHHHHHHHHhCCCe----EEEeCchHHHHHHHHHHhc-CC
Confidence 4447788888875532211 121 1 122 7899999999999865 5677788888888888776 88
Q ss_pred Cc-EEEecCCCcchhhH--HHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH
Q psy16512 149 GS-FIYLTDNHTSVLGM--RELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC 223 (815)
Q Consensus 149 gd-vv~~~~~h~s~~~~--~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I 223 (815)
|| ++++...|.+.+.. ........ .++++.+...+++++.++++... ....++++|++++++ ||.++|.++|
T Consensus 73 gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~lv~l~np~--~G~v~~~~~l 149 (333)
T PRK10534 73 GEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDD-IHFARTRLLSLENTH--NGKVLPREYL 149 (333)
T ss_pred CCeeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccC-cCcccceEEEEecCC--CCeecCHHHH
Confidence 98 77776666543321 12221111 33344444566666655332000 000158999999654 6999999888
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCCC---CCCCC--CCCCcEEEEccccccccCCcce-EEEEecccccccCc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLK--QHQPDFISISFYKMFGYPTGLG-ALIVKQKSAHVLNK 297 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~--~~~~D~vv~S~~K~~g~p~G~G-~l~~~~~~~~~l~~ 297 (815)
.++++ .|+++++++++|+++..+.. ..... ....|.++.||||.|+.+ +| +++.++++++.++.
T Consensus 150 ~~i~~--------~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~i~~~~~ 219 (333)
T PRK10534 150 KQAWE--------FTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP--VGSLLVGNRDYIKRARR 219 (333)
T ss_pred HHHHH--------HHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc--ccceEEcCHHHHHHHHH
Confidence 76554 23388999999998654321 11110 112466667999999954 67 57678887765533
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.... ..+..+..+ .++..++..++.....+++..+.++++.+.|+++ +
T Consensus 220 ~~~~------------------------~~~~~~~~~-~~~a~~~~~l~~~~~~~~~~~~~r~~l~~~L~~~-------g 267 (333)
T PRK10534 220 WRKM------------------------TGGGMRQAG-ILAAAGLYALKHNVARLQEDHDNAAWLAEQLREA-------G 267 (333)
T ss_pred HHHH------------------------hCCchhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-------C
Confidence 2210 011112111 1111222223322122355556778999999987 6
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
++++.+ .++++.+.++..+ ..++.+.|.++||.++++
T Consensus 268 ~~~~~~--------~~nfv~~~~~~~~-----~~~~~~~l~~~gi~v~~~------------------------------ 304 (333)
T PRK10534 268 ADVMRQ--------DTNMLFVRVGEEQ-----AAALGEYMRERNVLINAS------------------------------ 304 (333)
T ss_pred CccCCC--------CceEEEEECCchh-----HHHHHHHHHHcCeeecCC------------------------------
Confidence 666643 2678888775311 235788899999999764
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+|++.....|.+++++++++|++++
T Consensus 305 -----------~~~rl~~~~r~t~e~~~~~~~~l~~~~ 331 (333)
T PRK10534 305 -----------PIVRLVTHLDVSREQLAEVVAHWRAFL 331 (333)
T ss_pred -----------ceEEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 236777765568999999999998765
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=191.49 Aligned_cols=302 Identities=14% Similarity=0.104 Sum_probs=188.4
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----e
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~ 173 (815)
..++|+++|++++ +++++ |++|+|+++|+.+++.++. .+|| |+++.+.|+.+...... +.| .
T Consensus 97 ~~~LR~aiA~~l~~~~~~~~~v~p~~--Ivit~G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~~--~~g~~vv~ 171 (447)
T PLN02607 97 LKSFRQAMASFMEQIRGGKARFDPDR--IVLTAGATAANELLTFILA-DPGDALLVPTPYYPGFDRDLRW--RTGVKIVP 171 (447)
T ss_pred hHHHHHHHHHHHHHhcCCCCCcCHHH--eEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHHh--cCCcEEEE
Confidence 5678888888764 56666 9999999999999999998 8999 88999888877653332 223 3
Q ss_pred EEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 174 YSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 174 v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
++.+.++ ..+++.++++++... ....+++++++++|+||||.++|.+.+.++++ +|+++++++|+|+++
T Consensus 172 v~~~~~~~f~~~~~~le~a~~~a~-~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~--------~~~~~~i~lI~DEiY 242 (447)
T PLN02607 172 IHCDSSNNFQVTPQALEAAYQEAE-AANIRVRGVLITNPSNPLGATVQRSVLEDILD--------FVVRKNIHLVSDEIY 242 (447)
T ss_pred EeCCCCCCCcCCHHHHHHHHHHHH-HhCCCeeEEEEeCCCCCcCcccCHHHHHHHHH--------HHHHCCCEEEEeccc
Confidence 4444332 356666666553211 12346899999999999999999777666655 455999999999987
Q ss_pred ccCC---CC-CCCC----C------CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcc
Q psy16512 252 YCGS---NM-LDLK----Q------HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 252 ~~g~---~~-~dl~----~------~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
+... .+ .++. . ...-.++.|++|.|| .+| +|+++.. +.+.+.++...
T Consensus 243 a~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg-~~GlRvG~ivs~n~~l~~~~~~~~--------------- 306 (447)
T PLN02607 243 SGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLG-LPGFRVGTIYSYNDKVVTTARRMS--------------- 306 (447)
T ss_pred cccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCC-CCcceEEEEEEcCHHHHHHHHHHh---------------
Confidence 6421 11 1110 0 112367789999999 457 7999984 34433221110
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHHH---HHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFDT---MEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~---l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
. .+..+.....++...++. ....-.. .+++.+.++.+.+.|++. ++....+..
T Consensus 307 ---------~--~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-------gi~~~~~~a----- 363 (447)
T PLN02607 307 ---------S--FTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-------GIECLKGNA----- 363 (447)
T ss_pred ---------h--cCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCcccCCe-----
Confidence 0 012233333444343332 1111111 155666667777778765 455444432
Q ss_pred cccceEEEEEecCC--CCccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 391 YQGNIVNFNLLHKD--GTYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 391 ~~~~i~~f~~~~~~--~~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.+++++++..- ...-...++. +++.++||.+.+|..|.. ..
T Consensus 364 --g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~---------------------------------~~ 408 (447)
T PLN02607 364 --GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHC---------------------------------SE 408 (447)
T ss_pred --eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCC---------------------------------CC
Confidence 678888875321 1000112344 455678999999875531 11
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.|++|++++. .++++++..++.|.+++..
T Consensus 409 ~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~ 437 (447)
T PLN02607 409 PGWFRVCFAN-MSEDTLEVALKRIHRFMDR 437 (447)
T ss_pred CCEEEEEecc-CCHHHHHHHHHHHHHHHHH
Confidence 4899999985 2578899999999887643
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-18 Score=184.59 Aligned_cols=269 Identities=13% Similarity=0.096 Sum_probs=175.7
Q ss_pred HHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcc
Q psy16512 108 DQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~ 184 (815)
.++|+.|+++++. ++ |++|+|+++|+.+++. . .+|| |++..+.|+.+.. .++..| .++++.+
T Consensus 52 ~~Lr~~ia~~~~~--~~--I~it~Gs~~al~~~~~--~-~~gd~v~v~~P~y~~~~~---~~~~~g~~~~~v~~~----- 116 (330)
T PRK05664 52 DGLEAAARAYYGA--PQ--LLPVAGSQAAIQALPR--L-RAPGRVGVLSPCYAEHAH---AWRRAGHQVRELDEA----- 116 (330)
T ss_pred HHHHHHHHHHhCC--CC--EEECcCHHHHHHHHHH--c-cCCCEEEEcCCChHHHHH---HHHHcCCeEEEechh-----
Confidence 5789999999986 34 9999999999998863 3 6888 8888866665544 444445 4444322
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LDLK 261 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~dl~ 261 (815)
.+++++ ++++++++++||||||.+++.+++.++++ .|+++++++|+|+++.-.... ..+.
T Consensus 117 -~~~~~~--------~~~~~v~l~nP~NPTG~~~s~~~l~~l~~--------~~~~~~~~iI~DE~y~~~~~~~s~~~~~ 179 (330)
T PRK05664 117 -EVEAAL--------DSLDVLVVVNPNNPTGRRFDPARLLAWHA--------RLAARGGWLVVDEAFMDNTPQHSLAACA 179 (330)
T ss_pred -hHhhhh--------cCCCEEEEeCCcCCCCCccCHHHHHHHHH--------HHHhcCCEEEEECCcccCCCcccccccc
Confidence 122211 35789999999999999999888777764 233789999999987533211 1222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
..+.-+++.||+|.|| .+| +||+++++++++.+.... ...+.+.....++.
T Consensus 180 ~~~~vi~~~SfSK~~g-l~GlRiG~~v~~~~l~~~~~~~~--------------------------~~~~~~~~~~~~~~ 232 (330)
T PRK05664 180 HRPGLIVLRSFGKFFG-LAGARLGFVLAEPALLRALAELL--------------------------GPWTVSGPTRWLAQ 232 (330)
T ss_pred cCCCEEEEeecccccc-CCCcceEEEEeCHHHHHHHHHhc--------------------------CCCCCCHHHHHHHH
Confidence 1122378889999999 557 899999888776553221 11133444445555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
.+++.........++..+.++++.+.|+++ +++ +.+ ....++.+.++ + ..++.+.|.+
T Consensus 233 ~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-------~~~---~~~-----~~~~f~~~~~~--~-----~~~~~~~l~~ 290 (330)
T PRK05664 233 AALADTPWQRRQRERLLAASQRLAALLRRH-------GLT---PAG-----GCALFQWVRTE--D-----AAALHEFLAR 290 (330)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHC-------CCc---ccC-----CcceEEEEecC--C-----HHHHHHHHHH
Confidence 555432221112266777788888888876 332 111 11244444432 2 2357888899
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+||.++. |.. .+++|||++. +.+++++|+++|+++..+
T Consensus 291 ~gi~v~~---f~~-----------------------------------~~~iRis~~~--~~~~~~~l~~al~~~~~~ 328 (330)
T PRK05664 291 RGILTRL---FEQ-----------------------------------PASLRFGLPA--DEADWARLDQALLAYRKE 328 (330)
T ss_pred CCeEEEE---CCC-----------------------------------CCeEEEECCC--CHHHHHHHHHHHHHHHhh
Confidence 9999963 110 2689999984 678999999999987543
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-18 Score=172.50 Aligned_cols=331 Identities=14% Similarity=0.094 Sum_probs=206.6
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDA 181 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~ 181 (815)
..+.++++|+.+-|.-. -+.++++.+|+..++..+. ++|| ||.+..=|...+. .....++.| ...++.+
T Consensus 63 T~~vlE~RiAaLEGG~a----a~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~-- 135 (426)
T COG2873 63 TTDVLEERIAALEGGVA----ALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD-- 135 (426)
T ss_pred hHHHHHHHHHHhhcchh----hhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC--
Confidence 37889999999998644 4667888889999999999 9999 7776665655444 444457777 4445543
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.+++ +++++||+|++....||-+.+.|++.|+++|| ++|++++||.+.+.+....++
T Consensus 136 -d~~~~~~-------aI~~nTkavf~EtigNP~~~v~Die~ia~iAh-----------~~gvpliVDNT~atpyl~rP~- 195 (426)
T COG2873 136 -DPENFEA-------AIDENTKAVFAETIGNPGLDVLDIEAIAEIAH-----------RHGVPLIVDNTFATPYLCRPI- 195 (426)
T ss_pred -CHHHHHH-------HhCcccceEEEEeccCCCccccCHHHHHHHHH-----------HcCCcEEEecCCCcceecchh-
Confidence 3455554 45689999999999999999999999999999 999999999998888654333
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEeccccccc-C---ccccc----CceEEEEecCC--cccccccCccccccCCC
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVL-N---KTFYG----GGTVKISMANE--NFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l-~---~~~~g----~~~~~~~~~~~--~~~~~~~~~~~~~~~gt 329 (815)
++++|+++.|.+||+|+. | +|.+++...-.+-. . |.+.. -....+...+. .|...-...-.|-...+
T Consensus 196 ~hGADIVvHS~TK~igGh-Gt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~ 274 (426)
T COG2873 196 EHGADIVVHSATKYIGGH-GTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGAT 274 (426)
T ss_pred hcCCCEEEEeecccccCC-ccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccc
Confidence 569999999999999954 5 77777764332211 1 11100 00000000000 00000000001122345
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC-----------CCCcccceEEE
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG-----------ESKYQGNIVNF 398 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~-----------~~~~~~~i~~f 398 (815)
++..+.+.+..+++.+.- +++|..+++..+.+.|.+. |.+..+.-.+.. .+...+++++|
T Consensus 275 lsPfnAfl~lqGlETL~L---RmerH~~NA~~vA~~L~~H------pkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF 345 (426)
T COG2873 275 LSPFNAFLLLQGLETLSL---RMERHCENALKVAEFLENH------PKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTF 345 (426)
T ss_pred cCcHHHHHHHhchhhhHH---HHHHHHHhHHHHHHHHhcC------CCeeeeecCCCCCCcchhHHHhhccCCCceEEEE
Confidence 555556656666665542 4577888888888888876 444443322111 14567899999
Q ss_pred EEecCCCCccCHHHHHHhhhcCCcEeccC---ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLKKIQLRTG---CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~gI~v~~g---~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
.+++..... ..+...|....-....| +...++....+..+++++..++ |..++.||+|+
T Consensus 346 ~~kgg~ea~---~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~a---------------Gv~~~~IRlSV 407 (426)
T COG2873 346 GVKGGYEAG---KKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAA---------------GVTPDLIRLSV 407 (426)
T ss_pred EecChHHHH---HHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhc---------------CCCCCcEEEEe
Confidence 998652211 11333332222222222 2223444455667777776554 66679999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy16512 476 GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~ 495 (815)
|. ||++.++.-|++.+
T Consensus 408 GI----Ed~~DiiaDl~qAl 423 (426)
T COG2873 408 GI----EDIDDIIADLEQAL 423 (426)
T ss_pred cc----CCHHHHHHHHHHHH
Confidence 96 55566666655543
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.6e-18 Score=183.81 Aligned_cols=278 Identities=12% Similarity=0.086 Sum_probs=179.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEe---cCCCcchhhHHHHhhccceEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYL---TDNHTSVLGMRELVKTNQIYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~---~~~h~s~~~~~~~~~~~g~v~~~~~~~~ 182 (815)
.+++++.+|+++|.++++ +++++|+++|+..++.++. ++|| |+++ .+.|+++.......+.. .+...
T Consensus 56 ~~~Le~~lA~~~g~~~e~--ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s~~~~~~l~ga~-~~~~~----- 126 (346)
T TIGR03576 56 EEKVQELGREHLGGPEEK--ILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPSIPRSCKLAGAE-YFESD----- 126 (346)
T ss_pred HHHHHHHHHHHcCCCcce--EEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchhHHHHHHHcCCE-EeccC-----
Confidence 889999999999998776 9999999999999999998 8999 6543 35777766555443221 22221
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc---ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-C
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY---PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-L 258 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~---~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-~ 258 (815)
+.+.+. . .+++++|+++. +|++|.++ |+++|.++|+ ++|+++++|++|+.+... .
T Consensus 127 ~l~~l~--------~-~~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~-----------~~~~~livDEAy~~~~~~~~ 185 (346)
T TIGR03576 127 ELSELK--------K-IDGTSLVVITG-STMDLKVVSEEDLKRVIKQAK-----------SKEAIVLVDDASGARVRRLY 185 (346)
T ss_pred CHHHHh--------h-CcCceEEEEEC-CCCCCcccCHHHHHHHHHHHH-----------HcCCEEEEECCccccccccC
Confidence 111111 1 24578888865 68999995 5666777777 899999999999876421 1
Q ss_pred ---CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 259 ---DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 259 ---dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
.....++|+++.|++|+++++. +||++.++++++.+..... .+ ..+.+.+..
T Consensus 186 ~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~-----------------------~~-~~s~~~~~~ 240 (346)
T TIGR03576 186 GQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGE-----------------------QF-GLEAQAPLL 240 (346)
T ss_pred CCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhc-----------------------Cc-ccCccHHHH
Confidence 1123357999999999774354 6999999888766543210 01 113455666
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++.++|+.+.. ....+..++.++++.+.++.+ .++.+. .+++.+.+...+. ...+.+
T Consensus 241 ~aa~~aL~~~~~-~~~~~~l~~r~~~~~~~l~~~---------~~~~~~--------~~f~~~~~~~~~~----~~~~~~ 298 (346)
T TIGR03576 241 AAVVRALEEFEL-SRIRDAFKRKEEVYLRLFDKL---------NVERTP--------TGFVIKGVEEEKL----IEIGLD 298 (346)
T ss_pred HHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhC---------CCCcCC--------CeEEEEeCCCCCH----HHHHHH
Confidence 667777765321 111255555566555556543 222111 4466665543111 134778
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFLNQY 494 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L~~~ 494 (815)
+|.++||.++++..+. + .++++|||++... +..++++++++|++-
T Consensus 299 ll~~~gV~v~~~~~f~---------------------------------~-~~~~vRis~~~~~~~~~~~~~~~~al~~~ 344 (346)
T TIGR03576 299 LLRNYGIITITAVGMP---------------------------------G-ASKTLRFDLAAKDAERIGDDYLVEAVKDS 344 (346)
T ss_pred HHHhCCEEEeCCcccC---------------------------------C-CCCeEEEEEecChHHhcCHHHHHHHHHhc
Confidence 8899999999864321 0 1379999999321 111799999999874
Q ss_pred H
Q psy16512 495 F 495 (815)
Q Consensus 495 ~ 495 (815)
+
T Consensus 345 ~ 345 (346)
T TIGR03576 345 L 345 (346)
T ss_pred c
Confidence 3
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-19 Score=189.49 Aligned_cols=229 Identities=15% Similarity=0.051 Sum_probs=168.7
Q ss_pred CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc
Q psy16512 93 PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 93 p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
.+.++..... ++++++.+++++|++. .+++++|+|.++..++.++. ++|| |++...+|+++.......+..
T Consensus 51 ~d~l~~~~g~----i~~~~~~~A~~~ga~~---~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~~g~~ 122 (294)
T cd00615 51 LDDLLDPTGP----IKEAQELAARAFGAKH---TFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVLSGAV 122 (294)
T ss_pred CCCCCCCChH----HHHHHHHHHHHhCCCC---EEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHHCCCE
Confidence 3334444555 8999999999999853 25669999999999999997 8999 889999999987766554333
Q ss_pred c-eEEcCch------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeE
Q psy16512 172 Q-IYSFSVD------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCF 244 (815)
Q Consensus 172 g-~v~~~~~------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~ 244 (815)
. +++.+.+ +.++++.++++++ ..+++++|+++++ |++|.++|+++|.++|+ ++|++
T Consensus 123 ~~~v~~~~~~~~~~~~~i~~~~l~~~l~-----~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~-----------~~g~~ 185 (294)
T cd00615 123 PVYLKPERNPYYGIAGGIPPETFKKALI-----EHPDAKAAVITNP-TYYGICYNLRKIVEEAH-----------HRGLP 185 (294)
T ss_pred EEEecCccCcccCcCCCCCHHHHHHHHH-----hCCCceEEEEECC-CCCCEecCHHHHHHHHH-----------hcCCe
Confidence 3 4444322 2466777766543 1246899999987 78999999999999999 89999
Q ss_pred EEEeccccc-----CCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccccccc
Q psy16512 245 VLLDAATYC-----GSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 245 vivD~a~~~-----g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
+++|++|+. +..+.+....++|+++.|+||++++|++.|+++++++..... ...
T Consensus 186 livDeA~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~-~~~-------------------- 244 (294)
T cd00615 186 VLVDEAHGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPD-RVN-------------------- 244 (294)
T ss_pred EEEECcchhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCCcCCHH-HHH--------------------
Confidence 999999875 333444445689999999999998777778887776532110 000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHH
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFK 367 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~ 367 (815)
.....++.+++++..+.++..+++++...+... ++..++++++++.|.
T Consensus 245 ~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 245 EALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYARQEIN 293 (294)
T ss_pred HHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 011245678999999999999999887665554 777777887877764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=179.71 Aligned_cols=295 Identities=11% Similarity=0.045 Sum_probs=176.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
+.|+.+.....|+.+.+++.+.+.. ....|. ...+++++++++|. + |++|+|+++|+.+++.
T Consensus 11 i~l~~~~np~~p~~~~~a~~~~~~~-~~~yp~------------~~~l~~~ia~~~~~---~--I~vt~G~~~al~~~~~ 72 (311)
T PRK08354 11 IDFSASVNPYPPEWLDEMFERAKEI-SGRYTY------------YEWLEEEFSKLFGE---P--IVITAGITEALYLIGI 72 (311)
T ss_pred eEecCCCCCCCCHHHHHHHHHHHHH-hhcCCC------------hHHHHHHHHHHHCC---C--EEECCCHHHHHHHHHH
Confidence 3344433444456666666554332 112232 56789999999983 3 9999999999998885
Q ss_pred hhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
.+ .+|| +++..+.|+.+....+ ..| .+.+. .+++.+++.+ . +++++++++|+||||..++
T Consensus 73 ~~--~~gd~vlv~~P~y~~~~~~~~---~~g~~~~~~~----~d~~~l~~~~-------~-~~~~vi~~~P~NPTG~~~~ 135 (311)
T PRK08354 73 LA--LRDRKVIIPRHTYGEYERVAR---FFAARIIKGP----NDPEKLEELV-------E-RNSVVFFCNPNNPDGKFYN 135 (311)
T ss_pred hh--CCCCeEEEeCCCcHHHHHHHH---HcCCEEeecC----CCHHHHHHhh-------c-CCCEEEEecCCCCCCCccC
Confidence 44 4788 8888877766654444 444 33322 2333443322 2 4688999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNK 297 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~ 297 (815)
.+++.++++ .|+++|+++|+|+++.--...-........+++.|++|.|+ .+| +||+++ ..+.++.
T Consensus 136 ~~~l~~l~~--------~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~-l~GlRiG~~v~---~~~~l~~ 203 (311)
T PRK08354 136 FKELKPLLD--------AVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYG-LPGIRVGYVKG---FEEAFRS 203 (311)
T ss_pred HHHHHHHHH--------HhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcC-Cccceeeeeee---hHHHHHH
Confidence 888877766 44589999999998743211000011234578889999999 557 799987 2222221
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.. ...+.+..+..++...++ . ..++..+.++.+.+....+. .
T Consensus 204 ~~--------------------------~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~l~------~ 245 (311)
T PRK08354 204 VR--------------------------MPWSIGSTGYAFLEFLIE---D---DFEHLRKTMPLIWREKERFE------K 245 (311)
T ss_pred cC--------------------------CCccCCHHHHHHHHHHHH---h---HHHHHHHHHHHHHHHHHHHH------H
Confidence 10 011223333322222221 1 11333344444444444331 1
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
.....+ .++++.+.+. + ..++.+.|.++||.+++|..+..
T Consensus 246 ~l~~~~--------~~~~~~~~~~--~-----~~~~~~~l~~~gv~v~~g~~f~~------------------------- 285 (311)
T PRK08354 246 ALYVKS--------DANFFIKDVG--D-----AEKFVEFLKRNGILVRDCTSFGL------------------------- 285 (311)
T ss_pred hcCCCC--------CCcEEEEECC--C-----HHHHHHHHHHCCeEEEecccCCC-------------------------
Confidence 111111 2455555432 1 23477788899999998864310
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++||+++ +.++.++++++|+++.
T Consensus 286 ----------~~~iRi~~~---~~~~~~~l~~al~~~~ 310 (311)
T PRK08354 286 ----------PGYIRFSVR---DREENEKLIRALREWR 310 (311)
T ss_pred ----------CCeEEEEeC---CHHHHHHHHHHHHHhh
Confidence 378999998 6788999999998753
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=191.88 Aligned_cols=337 Identities=15% Similarity=0.104 Sum_probs=200.7
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhh
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
....|..++++..+.+... .+.....+..... ..++|+.|++++ | +++++ |++|+|+++|+.+++++
T Consensus 138 ~~~fp~~~i~~a~~~l~~~-~~~~~~~Y~~s~G----~~~lReaIA~~~~~r~g~~~~pe~--I~iT~Ga~~ai~~~~~~ 210 (534)
T PLN02231 138 HGLFSADAIERAWQILDQI-PGRATGAYSHSQG----IKGLRDAIAAGIEARDGFPADPND--IFLTDGASPAVHMMMQL 210 (534)
T ss_pred cccCCHHHHHHHHHHHHhc-CCccccCcCCCCC----cHHHHHHHHHHHHhccCCCCCccc--EEEeCCHHHHHHHHHHH
Confidence 3345556666655544321 1100111333334 778888888876 4 45555 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+...+|| |++..+.|+.+.......+... .+++++++ .++++.++++++... ....+++++++++|+||||.+++
T Consensus 211 l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~-~~~~~~k~ivl~nP~NPTG~vls 289 (534)
T PLN02231 211 LIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDAR-SKGITVRALVVINPGNPTGQVLA 289 (534)
T ss_pred hccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEeCCCCCCCcCCC
Confidence 9734788 9999988887765555443332 55666542 567777776553111 01125899999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccC-----CCCCCCCC---------CC-CcEEEEcccccc-ccCCc--
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-----SNMLDLKQ---------HQ-PDFISISFYKMF-GYPTG-- 281 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-----~~~~dl~~---------~~-~D~vv~S~~K~~-g~p~G-- 281 (815)
.+++.++++ +|+++++++|+|+++.-- .....+.. .. .-+++.|++|.| | .+|
T Consensus 290 ~e~l~~Iv~--------~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g-~pGlR 360 (534)
T PLN02231 290 EENQRDIVE--------FCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYG-ECGKR 360 (534)
T ss_pred HHHHHHHHH--------HHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCccccc-CCccc
Confidence 887666655 445999999999886421 11111111 01 125667999965 5 557
Q ss_pred ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH-------HHHh----
Q psy16512 282 LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-------TMEK---- 347 (815)
Q Consensus 282 ~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-------~l~~---- 347 (815)
+||+++ ++++.+.+.... .. ..+.+..+..++..+++ ....
T Consensus 361 iGy~~~~~~~~~l~~~l~k~~------------------------~~-~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~ 415 (534)
T PLN02231 361 GGYMEVTGFTSDVREQIYKVA------------------------SV-NLCSNISGQILASLVMSPPKPGDESYESYMAE 415 (534)
T ss_pred eEEEEEecCCHHHHHHHHHHH------------------------hh-hcCCChHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence 899987 455555442211 00 11233344444444441 1111
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE-EE--ecC--CCCc---c-CHHHH-HHhh
Q psy16512 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF-NL--LHK--DGTY---Y-GYSEV-QNLA 417 (815)
Q Consensus 348 ~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f-~~--~~~--~~~~---~-~~~~v-~~~l 417 (815)
.....+.+++.++++.+.|+++ +++.+..|. |+++.| ++ +.. +... . ....+ .+++
T Consensus 416 ~~~i~~~~~~r~~~l~~~L~~~------~gi~~~~p~--------Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll 481 (534)
T PLN02231 416 KDGILSSLARRAKTLEDALNSL------EGVTCNKAE--------GAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLL 481 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------CCceecCCC--------eeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHH
Confidence 1111256777888888888887 678877665 444444 33 211 0000 0 01112 3456
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.||.+.+|+.|... ....++|+++. .++++++..++.|.+++.
T Consensus 482 ~~~GV~vvPGs~Fg~~--------------------------------~g~~~~Rit~~--~~~e~l~eal~RL~~~~~ 526 (534)
T PLN02231 482 NATGIVVVPGSGFGQV--------------------------------PGTWHFRCTIL--PQEDKIPAIVSRLTEFHK 526 (534)
T ss_pred HhcCEEEeCCcccCCC--------------------------------CCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence 7889999999765321 01257999985 578888888888877543
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=187.96 Aligned_cols=308 Identities=15% Similarity=0.101 Sum_probs=189.7
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchhh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDDA 181 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~~ 181 (815)
....++++|+++.|+.. ++.++++..|+..++.++. ++|| +|.+..-|.......+ .+...| ...++.
T Consensus 56 t~~~le~~la~Le~g~~----a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~--- 127 (386)
T PF01053_consen 56 TVRALEQRLAALEGGED----ALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP--- 127 (386)
T ss_dssp HHHHHHHHHHHHHT-SE----EEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST---
T ss_pred cHHHHHHHHHHhhcccc----eeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc---
Confidence 37889999999999843 6777888889999999998 8999 8888877766655444 455566 334443
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC-eEEEEecccccCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN-CFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g-i~vivD~a~~~g~~~~dl 260 (815)
.+.+.++++ ++++|++|++..+.||+..+.|+++|+++++ ++| ++++||.+.+.+... +.
T Consensus 128 ~d~~~l~~~-------l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~-----------~~g~~~~vVDnT~atp~~~-~p 188 (386)
T PF01053_consen 128 TDLEALEAA-------LRPNTKLVFLESPSNPTLEVPDLEAIAKLAK-----------EHGDILVVVDNTFATPYNQ-NP 188 (386)
T ss_dssp TSHHHHHHH-------HCTTEEEEEEESSBTTTTB---HHHHHHHHH-----------HTTT-EEEEECTTTHTTTC--G
T ss_pred hhHHHHHhh-------ccccceEEEEEcCCCcccccccHHHHHHHHH-----------HhCCceEEeeccccceeee-cc
Confidence 234444443 3478999999999999999999999999999 888 999999998877542 22
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEec--ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQ--KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~--~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
-.+++|+++.|.+|+++|... .|++++++ +..++++... +....+++....+
T Consensus 189 L~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~------------------------~~~G~~~~p~da~ 244 (386)
T PF01053_consen 189 LELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR------------------------RLLGATLSPFDAW 244 (386)
T ss_dssp GGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH------------------------HHHT-B--HHHHH
T ss_pred CcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh------------------------hhcCccchHHHHH
Confidence 246899999999999995543 46776665 3433332111 1222344444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCC
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~ 406 (815)
.+..+++.+ ..++++..+.+..+.+.|.+. |.++ ++-|.-.+. ....+++++|.+.+...
T Consensus 245 ll~rgl~Tl---~~R~~~~~~nA~~lA~~L~~h------p~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~- 314 (386)
T PF01053_consen 245 LLLRGLRTL---PLRMERQNENAEALAEFLEEH------PKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEE- 314 (386)
T ss_dssp HHHHHHTTH---HHHHHHHHHHHHHHHHHHHTS------TTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHH-
T ss_pred HHhcCCCcH---HHHHHHHHHHHHHHHHHHHhC------CCCCeEEEcccccccceeeeeecccccCceeEEEeccchh-
Confidence 444454443 334578888888899999887 5554 444421110 12456799999986431
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+.+.|+-..+.++.|...+ ++....+..++++...+. |..++.||+|+|..+.++-
T Consensus 315 ~--~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~---------------Gi~~~liRlSvGlEd~~dL 377 (386)
T PF01053_consen 315 A--ARRFLDALKLFSIAPSLGGVESLISHPASTSHRSLSPEERAEA---------------GISDGLIRLSVGLEDPDDL 377 (386)
T ss_dssp H--HHHHHHH-SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHHHT---------------TS-TTEEEEE--SS-HHHH
T ss_pred h--hHhHHhhhhhHhhhhhcCCcccccccccchhhccCChhhhhcc---------------CCCCCeeEEEeccCCHHHH
Confidence 1 1235556655555555564322 333334555666554333 5667999999997554444
Q ss_pred HHHHHHHH
Q psy16512 484 VKYFLSFL 491 (815)
Q Consensus 484 i~~lv~~L 491 (815)
++.|-++|
T Consensus 378 i~Dl~~AL 385 (386)
T PF01053_consen 378 IADLEQAL 385 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 44444443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=184.24 Aligned_cols=313 Identities=11% Similarity=0.066 Sum_probs=205.0
Q ss_pred hhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc-------
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE------- 145 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~------- 145 (815)
+++.++..+.+.....+...+. ...... .+++++.||+++|.+. .++.+++-.|+..++.++.
T Consensus 119 p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~----h~~LE~~LA~f~g~e~----all~sSGy~AN~~~i~aL~~~~~~~~ 190 (476)
T PLN02955 119 PTISNAAANAAKEYGMGPKGSALICGYTTY----HRLLESSLADLKKKED----CLVCPTGFAANMAAMVAIGSVASLLA 190 (476)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCccccChHH----HHHHHHHHHHHHCCCc----EEEECChHHHHHHHHHHHhhcccccc
Confidence 5566666666554322222222 444445 7889999999999865 4455555568777777762
Q ss_pred ------cCCCc-EEEecCCCcchhhHHHHhhccc---eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 146 ------FNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 146 ------~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
..+++ +++....|.|++...++++..+ .+.+..++ .+.++++|+ ....+.++|++..+.++.|
T Consensus 191 ~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HND---~~~Le~~L~----~~~~~~~~Vv~EgV~SmdG 263 (476)
T PLN02955 191 ASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHCD---MYHLNSLLS----SCKMKRKVVVTDSLFSMDG 263 (476)
T ss_pred ccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCCC---HHHHHHHHH----hCCCCceEEEEeCCCCCCC
Confidence 13455 6777789999988777765443 33444433 333444332 2233468999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
.+.|+++|.++++ ++|+++++|++|+.|..-. .+. ...|+++.|++|.||.. | |++.
T Consensus 264 diapL~eL~~L~~-----------~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~-G-Gfi~ 329 (476)
T PLN02955 264 DFAPMEELSQLRK-----------KYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCH-G-GFIA 329 (476)
T ss_pred CcCCHHHHHHHHH-----------HcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhcc-C-ceee
Confidence 9999999999999 8999999999999765322 121 25789999999999944 3 7788
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYF 366 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L 366 (815)
.+++.++.++..- .. ...++..+.....+..++++.+.......++++++.+++.+.
T Consensus 330 gs~~~~~~l~~~~--~~--------------------~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~- 386 (476)
T PLN02955 330 CSKKWKQLIQSRG--RS--------------------FIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL- 386 (476)
T ss_pred cHHHHHHHHHHhC--CC--------------------CeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-
Confidence 8877665543210 00 112224455566666677877754422235566666666542
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
+ ++.+ ..+|+.+.+.+.... ..+.+.|.++||.+....+...+..
T Consensus 387 --~-------G~~~-----------~sPI~pI~ig~~~~a----~~~~~~L~~~Gi~v~~i~yPtVP~g----------- 431 (476)
T PLN02955 387 --S-------GVDI-----------SSPIISLVVGNQEKA----LKASRYLLKSGFHVMAIRPPTVPPN----------- 431 (476)
T ss_pred --c-------CCCC-----------CCCEEEEEeCCHHHH----HHHHHHHHHCCCEEEEECCCCCCCC-----------
Confidence 1 2211 157888877653322 2478889999999986544332211
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+|++++..+|++||++++++|.++.
T Consensus 432 ---------------------~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 432 ---------------------SCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred ---------------------CceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 2579999999999999999999998863
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=179.89 Aligned_cols=310 Identities=13% Similarity=0.069 Sum_probs=201.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.+++.++.+.|... .+.++++..|+..++.++. ++|| +|++...|...+. ......+.| ...+++...
T Consensus 65 ~~~lE~~~a~LEg~~~----~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~- 138 (396)
T COG0626 65 RDALEEALAELEGGED----AFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDD- 138 (396)
T ss_pred HHHHHHHHHHhhCCCc----EEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCCh-
Confidence 7888999999998755 5666677779999999998 9999 8888877766655 444556666 333443221
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+...+++ ..++|++|++..|+||+-.+.|+++|+++++ ++|+.++||++.+.|...-.+ .
T Consensus 139 --~~~~~~~------~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~-----------~~g~~vvVDNTfatP~~q~PL-~ 198 (396)
T COG0626 139 --EALEAAI------KEPNTKLVFLETPSNPLLEVPDIPAIARLAK-----------AYGALVVVDNTFATPVLQRPL-E 198 (396)
T ss_pred --HHHHHHh------cccCceEEEEeCCCCcccccccHHHHHHHHH-----------hcCCEEEEECCcccccccChh-h
Confidence 1222211 1258999999999999999999999999999 889999999999988754333 4
Q ss_pred CCCcEEEEccccccccCCc-c-eEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG-L-GALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~-G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|..|.++|... + |+++.+++.+. .+.... .+...+.+.....+.+.
T Consensus 199 ~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~-----------------------~~~~G~~l~p~dA~l~l 255 (396)
T COG0626 199 LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQ-----------------------RANTGAVLSPFDAWLLL 255 (396)
T ss_pred cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHH-----------------------HhhcCCCCCHHHHHHHH
Confidence 5899999999999996544 3 54444554432 221111 01122334444445555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. .++++..+.+..+.+.|.+. |.++ ++-|...+ .....+++++|.+.+. +.
T Consensus 256 RGlkTL~---~Rm~~~~~nA~~IA~~L~~~------p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--~~-- 322 (396)
T COG0626 256 RGLRTLA---LRMERHNENALKIAEFLADH------PKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--EA-- 322 (396)
T ss_pred hccchHH---HHHHHHHHHHHHHHHHHhcC------CCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--HH--
Confidence 5555443 34577777788888888775 4443 44332100 0113789999999864 21
Q ss_pred HHHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|+...+..+.|.. -.++....|..++.+.+.+. |..++.||+|+|..+.++-++.
T Consensus 323 ~~~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~---------------Gi~~~LvRlSVGlEd~eDLi~D 387 (396)
T COG0626 323 AKKFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKA---------------GITDGLVRLSVGLEDVEDLIAD 387 (396)
T ss_pred HHHHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhc---------------CCCCCeEEEEecCCCHHHHHHH
Confidence 12366667777777777632 22333333444444443322 5667999999998766666666
Q ss_pred HHHHHHH
Q psy16512 487 FLSFLNQ 493 (815)
Q Consensus 487 lv~~L~~ 493 (815)
|-++|++
T Consensus 388 l~~Al~~ 394 (396)
T COG0626 388 LEQALAK 394 (396)
T ss_pred HHHHHHh
Confidence 6666654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=187.04 Aligned_cols=301 Identities=12% Similarity=0.045 Sum_probs=187.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCch--h
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVD--D 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~--~ 180 (815)
+++++++++++.|.+. .+.+++++.|+.+++.++. ++|| ||++...|...+.+ ...+...| ...++.+ +
T Consensus 66 ~~~lE~~la~leg~~~----av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~ 140 (384)
T PRK06434 66 VQAFEEKYAVLENAEH----ALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140 (384)
T ss_pred HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChh
Confidence 8899999999999864 5666777799999999986 9999 77766555444443 35555566 3333322 2
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
.++ +. .+++++|++.+++||++.+.|+++|+++|+ +++ ++||++++.+.....+
T Consensus 141 ~~~---l~----------~~~tklv~~e~~snpt~~v~Di~~I~~la~-----------~~~--lvVD~t~~s~~~~~pl 194 (384)
T PRK06434 141 SLD---FD----------PSNYDLIYAESITNPTLKVPDIKNVSSFCH-----------END--VIVDATFASPYNQNPL 194 (384)
T ss_pred hee---ec----------CCCeeEEEEEcCCCCCceeecHHHHHHHHH-----------HcC--eEEECCCCCcccCCch
Confidence 211 11 135899999999999999999999999999 777 5679998776543333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|++++|.+|+++++.+ .|+++.+++ ..++++.... ......+....+
T Consensus 195 -~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~------------------------~~G~~~~~~~A~- 248 (384)
T PRK06434 195 -DLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK------------------------TLGSNPDPIQAY- 248 (384)
T ss_pred -hcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH------------------------hcCCCCCHHHHH-
Confidence 46899999999999997764 455555443 3333321110 011122222222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCC--C-CCCCcccceEEEEEecCCCCccCHHHH
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTD--Y-GESKYQGNIVNFNLLHKDGTYYGYSEV 413 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~--~-~~~~~~~~i~~f~~~~~~~~~~~~~~v 413 (815)
.++..++.+...+++..+++..+.+.|... |.+ +++-|.. . ......+++++|.+.+ .+. ...+
T Consensus 249 --l~~~gL~tL~~R~~r~~~~a~~~a~~L~~~------p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~--~~~--~~~f 316 (384)
T PRK06434 249 --LALRGLKTLGLRMEKHNKNGMELARFLRDS------KKISNVYYPDTEIGKKVLRGFGGMLSFELRS--MED--VHKF 316 (384)
T ss_pred --HHHhCCCcHHHHHHHHHHHHHHHHHHHHcC------CCccEEECCChHHHHHhcCCCCceEEEEECC--HHH--HHHH
Confidence 223334444445588889999999999887 444 2333321 0 0012458999999964 111 1235
Q ss_pred HHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
.+.|.-..+.++.|.. ..++....+.+++++..... |..++.||+|+|..+.++-++.|.++
T Consensus 317 ~~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~~~---------------gi~~~liRlsvGlEd~~dLi~dl~~A 381 (384)
T PRK06434 317 IRNLEIPMVAASLGGVESLITLPVETSHSSLSPEERERL---------------GISDNLVRFSIGIEDIDDLIKDIENA 381 (384)
T ss_pred HHhCCcceEccCCCCCCeeeECCCccccccCCHHHHHhc---------------CCCcCeEEEEeCcCCHHHHHHHHHHH
Confidence 5556555566666642 22333334555655543222 56678999999986554445555555
Q ss_pred H
Q psy16512 491 L 491 (815)
Q Consensus 491 L 491 (815)
|
T Consensus 382 l 382 (384)
T PRK06434 382 L 382 (384)
T ss_pred h
Confidence 4
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=178.83 Aligned_cols=319 Identities=14% Similarity=0.081 Sum_probs=212.9
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
.+.+.+++.+++.+.-.. -+..+...+. .+++.+++++++|. .. ++|++++|+|+.+++.+.. +||
T Consensus 9 ~~g~~~~m~eam~~a~~~-----~~~~YG~D~~----~~~~e~~~ae~~g~--~a--~~Fv~sGT~aN~lal~~~~-~~~ 74 (342)
T COG2008 9 VAGPTPEMREALAAANAV-----GDDVYGEDPT----TNALEQRIAELFGK--EA--ALFVPSGTQANQLALAAHC-QPG 74 (342)
T ss_pred cCCCCHHHHHHHHhcccc-----CCCCCCCCHH----HHHHHHHHHHHhCC--ce--EEEecCccHHHHHHHHHhc-CCC
Confidence 445567777777654211 1112444455 88999999999998 33 9999999999999999999 999
Q ss_pred c-EEEecCCCcchhhHHHHhhccc--eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ--IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g--~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~ 224 (815)
+ +++....|....+.-......+ .+++. .++.+++++++.+|.. .......+.++++.+..|..|+++|+++|.
T Consensus 75 ~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~te~GtVy~l~el~ 153 (342)
T COG2008 75 ESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTATEGGTVYPLDELE 153 (342)
T ss_pred CeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccCCCceecCHHHHH
Confidence 8 8999999988765332222222 33332 5678899888875542 111334567777777777889999999987
Q ss_pred HHhhccccccccccCCCCeEEEEeccccc---CCCCCCCCCC--CCcEEEEccccccccCCcceEEEEecccccccCc--
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSNMLDLKQH--QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK-- 297 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~~~dl~~~--~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~-- 297 (815)
++++ +|+++|+.|++|||-.. ...-++...+ ++|+++++++|.+|.| +-.+++.+.+++++++.
T Consensus 154 ~i~~--------~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~-~gAiv~gn~~~~~~a~~~r 224 (342)
T COG2008 154 AISA--------VCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAP-VGAIVFGNRDFAKRARRWR 224 (342)
T ss_pred HHHH--------HHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcce-eeeEEEcCHHHHHHHHHHH
Confidence 7776 66699999999988332 1122333333 6999999999999956 44677778888776542
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhccccCCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
...|++.. -..++++ +++-+++.. .... .|..+++++|.+.+.+.
T Consensus 225 K~~Ggl~~--------------------------k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~~------ 271 (342)
T COG2008 225 KRAGGLMR--------------------------KARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEAK------ 271 (342)
T ss_pred HHhcccHh--------------------------hhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhhc------
Confidence 22333331 1223333 223333322 2223 77778899999999977
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
||+++..|.. .+++.+.++.. ....|...|+....|..-
T Consensus 272 ~G~~~~~~~~-------tN~vf~~l~~~---------~i~~l~~~~~~~~~~~~~------------------------- 310 (342)
T COG2008 272 PGVKLAFPVE-------TNMVFVRLPES---------AIEALRLAGALFYRGVLI------------------------- 310 (342)
T ss_pred CCceeccCCc-------ccEEEEECChH---------HHHHHHhhchhheeeeec-------------------------
Confidence 7999987643 78888887642 234455555443322110
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+.....+|+..++.++++||++++..+++++
T Consensus 311 ---------~~~~~~vRfvts~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 311 ---------GAHGEIVRFVTSWATSEEDVDELVAAIKALL 341 (342)
T ss_pred ---------cCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence 0000369999999999999999999998864
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=189.09 Aligned_cols=304 Identities=11% Similarity=0.061 Sum_probs=183.7
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhcc----CCCc-EEE-ecCCCcchhhHHHHhh---cc
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEF----NEGS-FIY-LTDNHTSVLGMRELVK---TN 171 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~----~~gd-vv~-~~~~h~s~~~~~~~~~---~~ 171 (815)
..++|+.|++++ ++++++ |++|+|+++|+.++++++.. .+|| |++ ..++|+.+........ ..
T Consensus 76 ~~~LR~aia~~~~~~~g~~v~~~~--I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~ 153 (416)
T PRK09440 76 KDELIEALAALLNERYGWNISPQN--IALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSY 153 (416)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhh--EEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeec
Confidence 567888888876 366766 99999999999999999872 2577 777 5778776654322211 11
Q ss_pred c--eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEE
Q psy16512 172 Q--IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVL 246 (815)
Q Consensus 172 g--~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vi 246 (815)
+ .++++.+ ..++++.++ ..++++++++++++||||.+++.+++.++++ .|+++++++|
T Consensus 154 ~~~~~~~~~~~~~~~~d~~~l~---------~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~--------~a~~~~~~iI 216 (416)
T PRK09440 154 RPNIELLPEGQFKYHVDFEHLH---------IDEDTGAICVSRPTNPTGNVLTDEELEKLDA--------LARQHNIPLL 216 (416)
T ss_pred ccccccccccccccCCCHHHcc---------cCCCceEEEEecCCCCCCccCCHHHHHHHHH--------HHHHcCCcEE
Confidence 1 2233322 123444332 1356899999999999999999777666554 3348999999
Q ss_pred EecccccCCCCC---CCCC--CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccccccc
Q psy16512 247 LDAATYCGSNML---DLKQ--HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 247 vD~a~~~g~~~~---dl~~--~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
+|+++....... +... .+.-+++.||+|+ + .+| +||+++++++++.+....
T Consensus 217 ~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~-~-~pGlRiG~~i~~~~l~~~~~~~~-------------------- 274 (416)
T PRK09440 217 IDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKL-G-LPGVRCGIVIADEEIIEALSNMN-------------------- 274 (416)
T ss_pred EeCCccccCCCcchhhcCccccCCeEEEeccccc-C-CCcceEEEEeCCHHHHHHHHHHH--------------------
Confidence 999986322111 1111 1234778899996 6 447 899999887766553211
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
.....+.+.+...++..+++.-. ...... +..++.++.+.+.|.+.. .+ -++.+..|.+ +.+
T Consensus 275 ----~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l--~~-~~~~~~~p~g-------g~f 340 (416)
T PRK09440 275 ----GIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYL--PD-EPCLIHKPEG-------AIF 340 (416)
T ss_pred ----HHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc-CCeEEecCCC-------ceE
Confidence 11122445555555555553211 111111 333444555555554420 00 1355554543 677
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+++.++... .+..++.+.+.++||.+++|..+.++.... .....+++|||+
T Consensus 341 iw~~~~~~~---~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~--------------------------~~~~~~~iRis~ 391 (416)
T PRK09440 341 LWLWFKDLP---ITTEELYQRLKARGVLVVPGHYFFPGLDED--------------------------WPHAHQCIRMNY 391 (416)
T ss_pred EEEECCCCC---CCHHHHHHHHHHCCEEEechHhhCCCCccc--------------------------cCCcCceEEEEe
Confidence 777765411 122357778889999999987553211000 000126899999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~ 496 (815)
+. ++++++.+++.|.+++.
T Consensus 392 ~~--~~~~l~~~i~~l~~~~~ 410 (416)
T PRK09440 392 VQ--DDEEIEKGIAILAEEVE 410 (416)
T ss_pred cC--CHHHHHHHHHHHHHHHH
Confidence 73 68999999999988764
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=164.03 Aligned_cols=370 Identities=14% Similarity=0.144 Sum_probs=260.6
Q ss_pred chhhhhhhhcccccchhhHHHHHHHHhh----ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 60 KDICYLDYTGAGVYSQSQMNQTIEQLKE----NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 60 ~~~iyLd~a~~~~~p~~v~~al~~~l~~----~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
+..+||=-++-+++|+.....+.+.+.. ..+++-......... -+.+...++.+.|+..++ |.+.++-|.
T Consensus 66 ~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~----De~il~l~~~iVGA~e~E--vavmNsLTv 139 (465)
T KOG3846|consen 66 KPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHFKGKVPWVSI----DEPILPLLAPIVGAQENE--VAVMNSLTV 139 (465)
T ss_pred CCeEEEeccccccCchhhHhHHHHHHHHHHhhhhhcccccccceeec----chhhhhhhhhhccCCchh--hhhHhhhhh
Confidence 3468888888888887766655444432 223322211222222 456778899999999887 999999998
Q ss_pred hHHHHHhhhccCCCc----EEEecCCCcchh-hHHHHhhccc------eEEcCchhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 136 AIKTVSEYFEFNEGS----FIYLTDNHTSVL-GMRELVKTNQ------IYSFSVDDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 136 al~~~~~al~~~~gd----vv~~~~~h~s~~-~~~~~~~~~g------~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
-++.++.++- +|-. +++....+||-+ .....++..| .+.+.+.......+.+.+|.-++ .-.....+
T Consensus 140 Nlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IE-kngDeiA~ 217 (465)
T KOG3846|consen 140 NLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIE-KNGDEIAL 217 (465)
T ss_pred HHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHH-hcCCeEEE
Confidence 8999988886 5443 788888889844 4555566666 44444433333333333332222 22345889
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccc-cCCcce
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFG-YPTGLG 283 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g-~p~G~G 283 (815)
|+++.++..||+..++.+|...-+ ..|++|=.|-||++|..|+.+..|++||.+...||.+. ++.|+|
T Consensus 218 v~fSGvqyYTGQ~Fdi~aIT~Agq-----------~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIg 286 (465)
T KOG3846|consen 218 VCFSGVQYYTGQYFDIGAITFAGQ-----------FKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIG 286 (465)
T ss_pred EEeecceeecccccchhhhhhccc-----------CCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccc
Confidence 999999999999999999997666 78999999999999999999999999999999999665 366699
Q ss_pred EEEEecccccccCcccccCceEEEEecCCccc-ccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFH-IKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQ 360 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~ 360 (815)
.+++..+..+..+|.+.||........+.... ....+.+.+|+...|++....|+..+++...+..... ++..-|..
T Consensus 287 GlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTg 366 (465)
T KOG3846|consen 287 GLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTG 366 (465)
T ss_pred eeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHh
Confidence 99999988887778888876554333322222 1235567788889999999999999999887653222 55555566
Q ss_pred HHHHHHHhccccC-----CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh
Q psy16512 361 YTYFYFKQLSYSN-----GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 361 ~l~~~L~~l~~~~-----~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~ 435 (815)
|+...++.....+ ..+.+.++.|.. ...+|.-+++.+..+.. .+.+.|.++|+.+..
T Consensus 367 YleyL~k~~~g~~~~~rt~Kl~~~IiTP~~---~~erGcQLsl~Fssp~~------~vfqeL~krGv~~Dk--------- 428 (465)
T KOG3846|consen 367 YLEYLLKASKGYKHPLRTEKLFFTIITPTS---TDERGCQLSLYFSSPTP------KVFQELHKRGVIGDK--------- 428 (465)
T ss_pred HHHHHHHHhcccCchhhhcceeEEEeCCcc---cccccceEEEEeCCCch------HHHHHHHHcCeeccc---------
Confidence 6655555443222 235677787765 24457777776654332 388999999987642
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe-ccCCCCHHHHHHHHHHHHHHHh
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS-YGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs-~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+.++.||+. ++.||+..||.+++++|.+++.
T Consensus 429 ------------------------------R~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d 460 (465)
T KOG3846|consen 429 ------------------------------RRPNVIRVAPVPLYNTFSDVYIFVNALNEAMD 460 (465)
T ss_pred ------------------------------cCCCceEeecchhhccHHHHHHHHHHHHHHHH
Confidence 235889998 6789999999999999999763
|
|
| >PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=170.03 Aligned_cols=93 Identities=27% Similarity=0.352 Sum_probs=71.2
Q ss_pred cccccccccceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCc--ceEEEecCCCCeEEEecccCC
Q psy16512 667 NINSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW--DQVLIETNDGLLSFQVTSQCT 744 (815)
Q Consensus 667 ~~~~f~d~~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w--~~i~Ig~~~~~~~~~~~~~~~ 744 (815)
....|.|.+|++|+|++|+++|+++++.+ ..+++||||||+|+|. +||+||.| ++++|| ++.|+++++|.
T Consensus 11 ~~~~~~d~~~v~l~s~~s~~~l~~~~~~~---~~~~~rFR~Nivv~g~-~~f~Ed~w~~~~l~iG----~~~l~v~~~~~ 82 (133)
T PF03473_consen 11 YKHHFGDERPVSLISQESLDALNARLGEP---GLDPRRFRPNIVVDGL-PPFDEDDWCGDRLRIG----DAVLEVTQPCP 82 (133)
T ss_dssp -----GCGGSEEEEECHHHHHHHHHCCCC---GGSCCCCT-SEEECS--T---TCCGBTEEEECT----TEEEEEEEE--
T ss_pred CcccCCCCCceeeccHHHHHHHHhhhccc---cCCHhHCCCCEEEecc-ccccccccceeeeccC----CEEEEEEeCcC
Confidence 46789999999999999999999998642 2379999999999999 99999999 999999 99999999999
Q ss_pred CccccccCccCCCCCCChhHHHH
Q psy16512 745 RCQYIYIDQETALNTDVPLGEYQ 767 (815)
Q Consensus 745 RC~~~~vd~~tg~~~~~~l~~l~ 767 (815)
||.++++||+||.++++....+.
T Consensus 83 rC~~~~~~~~tg~~~~~~~~~~~ 105 (133)
T PF03473_consen 83 RCVMPNVDPDTGERDPEGKPLFG 105 (133)
T ss_dssp --CHHHHHHCHCTCTSTTHHHHH
T ss_pred CCCccceeeccCcccchhhhhhh
Confidence 99999999999999988444443
|
Suphurylated MOCO is required by several enzymes, including: aldehyde oxidase (1.2.3.1 from EC), which function in the last step of abscisic acid biosynthesis in plants []; and xanthine dehydrogenase (1.17.1.4 from EC), which synthesis uric acid from xanthine during nitrogen metabolism []. This entry represents the beta-barrel C-terminal domain of MOCO sulphurase (MOSC domain), which has a beta-barrel structure similar to that of the beta-barrel domain in pyruvate kinase and contains a highly conserved cysteine residue required for activity. MOSC domains are found in several diverse metal-sulphur cluster biosynthesis proteins from both eukaryotes and prokaryotes. MOSC domains occu as either stand-alone forms, such as the YiiM protein from Escherichia coli, or fused to other domains, such as a NifS-like catalytic domain in MOCO sulphurase. The MOSC domain is predicted to be a sulphur-carrier domain that receives sulphur abstracted from pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulphur-metal clusters []. The MOSC domain contains several patches of hydrophobic residues and an absolutely conserved cysteine residue situated closer to the C-terminal end of the domain. The absolutely conserved cysteine in the MOSC domain is reminiscent of the analogous conservation of a cysteine in the active site of the thioredoxin and rhodanese superfamilies. Members of both these superfamilies, especially of the latter one, have been implicated in the synthesis of Fe-S clusters, through mobilisation of sulphur with their active cysteine. ; GO: 0003824 catalytic activity, 0030151 molybdenum ion binding, 0030170 pyridoxal phosphate binding; PDB: 1ORU_B 1O67_C 1O65_C. |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=186.27 Aligned_cols=295 Identities=14% Similarity=0.158 Sum_probs=194.0
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--e--EE
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--I--YS 175 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~--v~ 175 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++..+. +||| |++..++| ..+...++..| . +|
T Consensus 134 ~~~LR~~ia~~l~~~~g~~~~~~~--IiiT~G~q~al~l~~~~l~-~pGd~v~vE~PtY---~~~~~~~~~~g~~~~~vp 207 (459)
T COG1167 134 LPELREAIAAYLLARRGISCEPEQ--IVITSGAQQALDLLLRLLL-DPGDTVLVEDPTY---PGALQALEALGARVIPVP 207 (459)
T ss_pred cHHHHHHHHHHHHHhcCCccCcCe--EEEeCCHHHHHHHHHHHhC-CCCCEEEEcCCCc---HHHHHHHHHcCCcEEecC
Confidence 566777776665 3 44555 9999999999999999998 8999 66666555 55555566666 4 45
Q ss_pred cCchhhhcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 176 FSVDDARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+| ++.++++.+++.+. ..++ .++++++.+||||..++.+. |.++|+ ++++++|.|...
T Consensus 208 ~d-~~G~~~e~le~~~~------~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~-----------~~~~~IIEDD~y 269 (459)
T COG1167 208 VD-EDGIDPEALEEALA------QWKPKAVYVTPTFQNPTGVTMSLERRKALLALAE-----------KYDVLIIEDDYY 269 (459)
T ss_pred CC-CCCCCHHHHHHHHh------hcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHH-----------HcCCeEEeeCcc
Confidence 55 44678888887553 1134 46667999999999999886 666666 999999999875
Q ss_pred cc----CCCCCCCCC---CCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 252 YC----GSNMLDLKQ---HQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 252 ~~----g~~~~dl~~---~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
+. +..+.++.. .+.-+++.||+|.+. |. .+||+++++++++.+....
T Consensus 270 ~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~~k------------------------ 324 (459)
T COG1167 270 GELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLRLK------------------------ 324 (459)
T ss_pred hhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHHHH------------------------
Confidence 42 222222222 244589999999999 73 3899999988776553211
Q ss_pred cccCCCCChhHHHHHHHHHH--HHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFD--TMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~--~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~ 400 (815)
.......+.....++..-+. ...+.-..+ +...+.++.+.+.|.+.. .+.+.+..|.+ |.++++.+
T Consensus 325 ~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~----~~~~~~~~p~g-------G~flwl~l 393 (459)
T COG1167 325 QAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEALAEYL----PELATWTRPEG-------GLFLWLEL 393 (459)
T ss_pred HHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCeeeecCCc-------eEEEEEEc
Confidence 11222334344333333222 011111111 555556666666776651 02556665553 77888888
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+.. ++..++.+.+.++|+.+.+ |..+.... ...+.+|++++..
T Consensus 394 ~~~----~~~~~l~~~a~~~gv~i~~~g~~f~~~~-------------------------------~~~~~~Rl~~s~~- 437 (459)
T COG1167 394 PEG----IDARELLAAALEKGVVVTPLGSAFSADG-------------------------------DPRNGLRLSFSSP- 437 (459)
T ss_pred CCC----CCHHHHHHHHHHCCCEEEcCCccccCCC-------------------------------CCCCeEEEEcCCC-
Confidence 754 2234588889999999988 76544321 1246899999965
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy16512 480 NWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~~ 497 (815)
+++++++.++.|.+++.+
T Consensus 438 ~~e~i~~gi~~l~~~~~~ 455 (459)
T COG1167 438 SEEEIEEGIKRLAALLRE 455 (459)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 589999999999887754
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-17 Score=181.92 Aligned_cols=360 Identities=10% Similarity=0.038 Sum_probs=221.6
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-----ceeEEecCCchhhH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-----HYSVIFTSGATSAI 137 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~~~iv~t~g~t~al 137 (815)
-|+.+...+..+..++.++..........+......+..+ .+++.+++++++|.+.. ...-+||+|+|+|+
T Consensus 132 ~f~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~l----E~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAn 207 (539)
T PLN02590 132 SYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATEL----EIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAV 207 (539)
T ss_pred CeeEeccCCCcHHHHHHHHHHHhcccccCCcccCchhHHH----HHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHH
Confidence 3344443444455555554443322111111111333333 67899999999998753 11368999999998
Q ss_pred HHHHhhhccC-------C--Cc-EE-EecCCCcchhhHHHHhhccc----eEEcCc--hhhhcchhhhhhhhhhhhhcCC
Q psy16512 138 KTVSEYFEFN-------E--GS-FI-YLTDNHTSVLGMRELVKTNQ----IYSFSV--DDARNMLNEFKESQENVENMRH 200 (815)
Q Consensus 138 ~~~~~al~~~-------~--gd-vv-~~~~~h~s~~~~~~~~~~~g----~v~~~~--~~~~~~~~~~~~l~~~~~~~~~ 200 (815)
..++.+.... . .+ ++ ++...|.|+.....+++-.. .++++. +..++++.++++|.+-. +...
T Consensus 208 l~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~-~~g~ 286 (539)
T PLN02590 208 LVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDL-AKGF 286 (539)
T ss_pred HHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHH-hcCC
Confidence 8777665420 1 23 44 45667998877666654321 567774 35789999888664211 1123
Q ss_pred CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC-----C-CCCCcEEEEcccc
Q psy16512 201 SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL-----K-QHQPDFISISFYK 274 (815)
Q Consensus 201 ~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl-----~-~~~~D~vv~S~~K 274 (815)
.+.+|+.+..++.||.+.|+++|+++|+ ++|+|+|||+|++......+- . -..+|.++.++||
T Consensus 287 ~P~~VvaTaGTT~tGaiDpl~~Ia~i~~-----------~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK 355 (539)
T PLN02590 287 IPFFICATVGTTSSAAVDPLVPLGNIAK-----------KYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHK 355 (539)
T ss_pred CcEEEEEEeCCCCCcccCCHHHHHHHHH-----------HhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchh
Confidence 4789999999999999999999999999 899999999998765532211 1 1247999999999
Q ss_pred ccccCCcceEEEEeccc--cccc--CcccccCce--EEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 275 MFGYPTGLGALIVKQKS--AHVL--NKTFYGGGT--VKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 275 ~~g~p~G~G~l~~~~~~--~~~l--~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
|++.|.++|++++++.. .+.+ .+.|..... .....++.+|. .+. +.. ...+.+..+++.+-..
T Consensus 356 ~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~---------i~l-sRr-~raLklW~~lr~~G~~ 424 (539)
T PLN02590 356 WLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQ---------ISL-SRR-FRSLKLWMVLRLYGSE 424 (539)
T ss_pred hcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccC---------CCC-CCc-hHHHHHHHHHHHHHHH
Confidence 99999999999999752 1111 122221100 00000111111 111 122 2234455566655443
Q ss_pred hhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--ccC--HHHHHHhhhcCCc
Q psy16512 349 RKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT--YYG--YSEVQNLANLKKI 422 (815)
Q Consensus 349 ~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--~~~--~~~v~~~l~~~gI 422 (815)
+.. +++..++++++.+.|++. |.++++.+.. -++++|++...... ..+ -..+.+.+.+.|.
T Consensus 425 G~~~~i~~~~~lA~~~~~~l~~~------~~fel~~~~~-------l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~ 491 (539)
T PLN02590 425 NLRNFIRDHVNLAKHFEDYVAQD------PSFEVVTTRY-------FSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGK 491 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc-------eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 322 289999999999999988 7899997654 68999998642111 010 1134444544554
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHhh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~~ 497 (815)
..-+.. ..+|+ .++|+++. +.++++||+.+++.|.+...+
T Consensus 492 ~~vs~t---------------------------------~~~g~--~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 492 IFISHT---------------------------------ALSGK--FVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred EEEEee---------------------------------EECCE--EEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 432211 11122 68999975 567899999999999887543
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-17 Score=179.79 Aligned_cols=355 Identities=12% Similarity=0.080 Sum_probs=224.8
Q ss_pred ccchhhHHHHHHHHhhc-cccCCCChh-hhhhhhhhhHHHHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhccCC
Q psy16512 72 VYSQSQMNQTIEQLKEN-IFSHPHGNS-VLSDFCVSEIDQMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~-~~~np~s~~-~~~~~~~~~~~~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~~~~ 148 (815)
..++.+.+++...+... ..+.|...+ .--+...+...-+.++..++||++++.|.+ +-.-+++.|+.+++.++. +|
T Consensus 159 ~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl-~P 237 (586)
T PLN02271 159 FVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL-LP 237 (586)
T ss_pred cCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc-CC
Confidence 45566666665544432 234444432 222221111334677888899988744311 334477789999999997 99
Q ss_pred Cc-EEEecCCCcchhhHH------HHhhccc----eEE--cC-chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 149 GS-FIYLTDNHTSVLGMR------ELVKTNQ----IYS--FS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 149 gd-vv~~~~~h~s~~~~~------~~~~~~g----~v~--~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
|| |+..+.+|...+.-. ..+...| .++ ++ .++.+|.+++++.+ ...++++|++.+..++
T Consensus 238 GD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a------~~~rPKLII~g~Sayp- 310 (586)
T PLN02271 238 GDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKA------LDFRPKILICGGSSYP- 310 (586)
T ss_pred CCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHh------hhcCCeEEEECchhcc-
Confidence 99 666676665533211 2223334 333 44 34577888777522 2478999999888888
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---CCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK---QHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~---~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
..+|+++|.++|+ ++|+++++|++|.+|..+.++. ..++|++++|.|||+.+|.| |+++++++.
T Consensus 311 -r~~D~~~i~eIAd-----------evGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~ 377 (586)
T PLN02271 311 -REWDYARFRQIAD-----------KCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGP 377 (586)
T ss_pred -CcCCHHHHHHHHH-----------HcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccc
Confidence 7789999999999 8999999999999998755432 22589999999999988999 888888765
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l 369 (815)
...+++...+++.... .....-.+...-++ .+++|+.+-. ++|+..++.+.... ...+ +++.++++.|.+.|.+.
T Consensus 378 ~~~~~g~~gs~s~~~~-~~d~~~kI~~aVfP-glqgGphn~~-IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~~ 454 (586)
T PLN02271 378 KLRKQGMLLSHGDDNS-HYDFEEKINFAVFP-SLQGGPHNNH-IAALAIALKQVATPEYKAYMQQVKKNAQALASALLRR 454 (586)
T ss_pred cccccCCccccccccc-cHHHHHHhhcccCC-ccccChhHHH-HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4333222222221100 00000000001112 5667776655 89999999876532 2444 88999999999999887
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|++++.... ..+++.+.+... .++...+.+.|.+.||.+..-..... .
T Consensus 455 -------G~~vv~ggT------dnHlvLvDl~~~---g~~G~~ae~~Le~~~I~~Nkn~iP~d---~------------- 502 (586)
T PLN02271 455 -------KCRLVTGGT------DNHLLLWDLTTL---GLTGKNYEKVCEMCHITLNKTAIFGD---N------------- 502 (586)
T ss_pred -------CCeEeeCCC------CcceeeecCccc---CCCHHHHHHHHHHcCeEeccccCCCC---C-------------
Confidence 888886432 256777776432 13345688999999998854221100 0
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~ 496 (815)
....++.|||.....+ .++|++.+.+.|.+.+.
T Consensus 503 --------------~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 503 --------------GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred --------------CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 0122467888865433 46899999999988775
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-17 Score=193.73 Aligned_cols=331 Identities=10% Similarity=0.051 Sum_probs=203.6
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~~ 139 (815)
.+.|+.+... ++|+.+.+++.+.+....+. ....+. .+.+++++++.+|.+.+ ..+|++|+|+++++..
T Consensus 699 vI~LsinE~d~ppPp~V~eAi~eal~~~~~s-----~g~pdl----r~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~l 769 (1082)
T PLN02672 699 LIHMDVDESFLPVPSAVKASIFESFVRQNIS-----ESETDP----RPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNK 769 (1082)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHhhcCCC-----CCChHH----HHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHH
Confidence 3556655544 34566667666655332110 011123 56788889998888764 1249999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCC-CccEEEEeccc-CC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRH-SNSLFVYPAES-NF 213 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~-n~ 213 (815)
++.++. ++|| |++..+.|+.+....+..+... .++.+.++ .++.+.+++++ .+ +++++++++|+ ||
T Consensus 770 ll~aLl-~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al-------~~~~~~~I~L~nPnhNP 841 (1082)
T PLN02672 770 LVLCCV-QEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTL-------ETVKKPWVYISGPTINP 841 (1082)
T ss_pred HHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh-------ccCCCCEEEEECcCCCC
Confidence 999998 8999 8888878877766666554333 56665432 34445555533 23 34689999997 99
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEeccccc----CCC--CCCCC----CCC------CcEEEEccccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSN--MLDLK----QHQ------PDFISISFYKMFG 277 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~--~~dl~----~~~------~D~vv~S~~K~~g 277 (815)
||.+++.+++.++++ .|+++|++||+|.+++. +.. +.++. ... .-+++.|++|.|+
T Consensus 842 TG~v~S~eeLe~Lle--------la~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~ 913 (1082)
T PLN02672 842 TGLLYSNSEIEEILS--------VCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELL 913 (1082)
T ss_pred cCccCCHHHHHHHHH--------HHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhc
Confidence 999999888777765 45589999999998751 211 01111 111 2356779999999
Q ss_pred cCCc--ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH--------
Q psy16512 278 YPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-------- 346 (815)
Q Consensus 278 ~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-------- 346 (815)
.+| +||++++++ +++.+.... . ...+......++.+++..+.
T Consensus 914 -lpGLRIGylIap~~eLi~~l~~~~------------------------~--~s~~~~~~q~Aaaaalall~~~~~~~~~ 966 (1082)
T PLN02672 914 -SGGHEFGFLALNDSVLIDAFHSAP------------------------G--LSRPHSTLKYTIKKLLGLKNQKSSDLLD 966 (1082)
T ss_pred -cHHHHheeEEeCCHHHHHHHHHhh------------------------h--hcCCCcHHHHHHHHHHHHHhccCcHHHH
Confidence 558 899999755 555543210 0 00111122333333332221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-------C------CCccCHHHH
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK-------D------GTYYGYSEV 413 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~-------~------~~~~~~~~v 413 (815)
......+.+++.++++.+.|++. ++.+..|.+ +.+++..+... + ...++..++
T Consensus 967 ~l~e~r~~Lk~rRd~L~e~L~~~-------Gi~v~~PeG-------GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~ef 1032 (1082)
T PLN02672 967 GVAEQKKILKSRAERLKETLEAC-------GWDVLEPQG-------GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNI 1032 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-------CCeEecCCc-------EEEEEEEccccccccccccccccccccCCCHHHH
Confidence 11111255777888888888876 566665542 33444433210 0 001234456
Q ss_pred HHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 414 QNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 414 ~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
.+.| .+.||.+.+|.++.. ++++|++++. ++++++++++.|+
T Consensus 1033 ae~LLee~GVaV~PGs~FG~-----------------------------------~g~~RIsfa~--~~e~LeeALerL~ 1075 (1082)
T PLN02672 1033 REAILKSTGLCINSSSWTGI-----------------------------------PGYCRFSFAL--EDSEFDRALKAIA 1075 (1082)
T ss_pred HHHHHHcCCEEEecCcccCC-----------------------------------CCeEEEEecC--CHHHHHHHHHHHH
Confidence 6655 566999998854321 3799999984 7789999999998
Q ss_pred HHH
Q psy16512 493 QYF 495 (815)
Q Consensus 493 ~~~ 495 (815)
++.
T Consensus 1076 kf~ 1078 (1082)
T PLN02672 1076 RFK 1078 (1082)
T ss_pred HHH
Confidence 853
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=185.01 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred hhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-----CC--CC-CceeEEecCCchhh
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-----NT--DS-DHYSVIFTSGATSA 136 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-----g~--~~-~~~~iv~t~g~t~a 136 (815)
+........++..+.++.+.+....|..|.. +.++|+++++.+ +. .+ +..+|++|+|+++|
T Consensus 105 l~~g~p~~~~~~~v~e~~~~~~~~~Y~~~~g-----------~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~a 173 (527)
T PRK09275 105 YVRDQLGFDADEFVYELVDGIIGDNYPVPDR-----------MLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAA 173 (527)
T ss_pred hcCCCCCCCCCHHHHHHHHHHhcCCCCCCCC-----------CHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHH
Confidence 3333334444555555666554333433332 445666665521 11 12 12249999999999
Q ss_pred HHHHHhh-----hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--Cchh--hhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 137 IKTVSEY-----FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDD--ARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 137 l~~~~~a-----l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+..++.+ +. ++|| |++..+.|+.+.....+.+... .+++ +.++ ..+.+.+++ ..++++++|
T Consensus 174 l~~~~~aL~~~~ll-~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~-------~~~~~tkai 245 (527)
T PRK09275 174 MCYIFDSLKENGLL-KAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEK-------LRDPSIKAL 245 (527)
T ss_pred HHHHHHHHhhhhcC-CCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHh-------hcCCCCCEE
Confidence 9999887 44 8999 9999988877766655543322 4444 3332 344444443 345789999
Q ss_pred EEecccCCCccccChHHHHHHhhcccccccccc--CCCCeEEEEecccccCC-CCCCCCC-C-CCcEEEEccccccccCC
Q psy16512 206 VYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC--SRSNCFVLLDAATYCGS-NMLDLKQ-H-QPDFISISFYKMFGYPT 280 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~--~~~gi~vivD~a~~~g~-~~~dl~~-~-~~D~vv~S~~K~~g~p~ 280 (815)
++++|+||||.+++.+++.++++ .| ++++++||+|.++..-. ...++.. . ..-+++.||+|.|| .+
T Consensus 246 ~l~nP~NPTG~v~s~e~l~~I~~--------ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~-mt 316 (527)
T PRK09275 246 FLVNPSNPPSVAMSDESLEKIAD--------IVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFG-AT 316 (527)
T ss_pred EEeCCcCCcCCCCCHHHHHHHHH--------HHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhcc-Cc
Confidence 99999999999999666555543 22 14699999998865321 1111111 1 23578889999999 66
Q ss_pred c--ceEEEEecc
Q psy16512 281 G--LGALIVKQK 290 (815)
Q Consensus 281 G--~G~l~~~~~ 290 (815)
| +||++++++
T Consensus 317 G~RlG~i~~~~~ 328 (527)
T PRK09275 317 GWRLGVIALHED 328 (527)
T ss_pred HhHHhhhhcCch
Confidence 8 899999876
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-18 Score=167.17 Aligned_cols=323 Identities=16% Similarity=0.190 Sum_probs=214.6
Q ss_pred ccccchhhHHHHHHHHh-hccc-cCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLK-ENIF-SHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~-~~~~-~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
.+.+..+..++|.++.. +..| .+|. ..++++.+|+++|-+. -+|.+++|.++.++++....+
T Consensus 31 vT~PTdeMr~am~eA~vgDdVyGeD~t------------t~rLE~~vA~l~GKEA----gLFv~SGTmgNllaIm~Hc~~ 94 (384)
T KOG1368|consen 31 VTVPTDEMRRAMAEASVGDDVYGEDPT------------TNRLEQRVAELFGKEA----GLFVPSGTMGNLLAIMVHCHQ 94 (384)
T ss_pred ccCChHHHHHHHhhcccCcccccCCcc------------HHHHHHHHHHHhCccc----eeeecccccccHHHHHHHhcC
Confidence 44556666776666543 2233 3444 7789999999999765 688888899999999888867
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhh-hhcCCCccEEEEecccCCCc-cccCh
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENV-ENMRHSNSLFVYPAESNFSG-TKYPL 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~-~~~~~~t~lv~i~~~~n~tG-~~~~l 220 (815)
+|. +|+.+.+|.-.+....++...| .+....++.+++++++.++..-. .-..+.|+||++.+-+|.+| .++|+
T Consensus 95 rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPl 174 (384)
T KOG1368|consen 95 RGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPL 174 (384)
T ss_pred CCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeH
Confidence 888 9999989977665444444444 34445567888888887553101 11235699999999988888 89999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccC---CCCCCCCCC--CCcEEEEccccccccCCcceEEEEeccccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG---SNMLDLKQH--QPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g---~~~~dl~~~--~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l 295 (815)
+++.++.. .|++||+.+++|+|-..- +.-++++++ ..|.+...++|.+|.|-| .+++.+++++++.
T Consensus 175 e~~~~v~~--------lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG~k~FI~kA 245 (384)
T KOG1368|consen 175 EELDRVKA--------LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVGSKDFIDKA 245 (384)
T ss_pred HHHHHHHH--------HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEccHHHHHHH
Confidence 88655443 333999999999873321 122233332 468899999999998865 4666788887654
Q ss_pred Cc--ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccC
Q psy16512 296 NK--TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~ 373 (815)
+. .-.|||+- + .+++++ +++-.++.-....++-++.+..+.+.+.+.
T Consensus 246 ~~~RKalGGGmR--------------------Q------sGvLaa-aaLval~~~~~~L~~dHk~A~~lAe~~~~~---- 294 (384)
T KOG1368|consen 246 RHFRKALGGGMR--------------------Q------SGVLAA-AALVALDENVPLLRADHKRAKELAEYINTP---- 294 (384)
T ss_pred HHHHHHhcCchh--------------------H------HHHHHH-HHHHHhhcchHHHHHHHHHHHHHHHHhccc----
Confidence 32 22344441 1 223222 122222222222245556666666666665
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+.+++..+. ...+++.+.+... .++.+++.+.+.++||.+-.|.
T Consensus 295 --~~i~v~v~a------~etNiv~~~l~q~---~~~~~~l~~~~~k~gi~lm~~~------------------------- 338 (384)
T KOG1368|consen 295 --EEIRVEVPA------VETNIVNMVLCQA---RLTAEELCKFLEKNGILLMGGA------------------------- 338 (384)
T ss_pred --cceeeecch------hhcceeeeecccc---cCCHHHHHHHHHHCCeEEeecc-------------------------
Confidence 457776553 2368888877432 3566789999999999986542
Q ss_pred CccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH-HHhhc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ-YFLQQ 498 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~-~~~~~ 498 (815)
...+|+.+++..|++++++++.++.+ ++...
T Consensus 339 --------------s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~q~ 370 (384)
T KOG1368|consen 339 --------------SRRIRIVLHHQVTDEDVEYVKSVLSKKFLKQL 370 (384)
T ss_pred --------------ccceEEEEEEecCHHHHHHHHHHHHHHHHhhc
Confidence 14599999999999999999999954 44444
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-17 Score=172.57 Aligned_cols=329 Identities=15% Similarity=0.076 Sum_probs=214.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~ 183 (815)
+.++++.+++++|++. .+.++|+|.|+.+++.++...+|| ||++..++.+.....-..+... ++.+|++ ..+|
T Consensus 36 v~~FE~~~ae~~G~k~----ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid 111 (374)
T COG0399 36 VRRFEQAFAEYLGVKY----AVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNID 111 (374)
T ss_pred HHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCC
Confidence 8899999999999976 788899999999999977779999 9999988888877777766666 7888865 5788
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.++++| +++||+|+..|.. |...+++.|.++|+ +||++||.|++|+.|...-. +..
T Consensus 112 ~~~ie~aI-------t~~tKAIipVhl~---G~~~dm~~i~~la~-----------~~~l~vIEDaAqa~Ga~y~g-k~v 169 (374)
T COG0399 112 PDLIEAAI-------TPRTKAIIPVHLA---GQPCDMDAIMALAK-----------RHGLPVIEDAAQAHGATYKG-KKV 169 (374)
T ss_pred HHHHHHHc-------ccCCeEEEEehhc---cCCCCHHHHHHHHH-----------HcCCeEEEEcchhccCeecC-ccc
Confidence 88888755 4789999998765 99999999999999 99999999999999976332 222
Q ss_pred C--CcEEEEccc--cccccCCc-ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 264 Q--PDFISISFY--KMFGYPTG-LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 264 ~--~D~vv~S~~--K~~g~p~G-~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
+ .|+.++||| |.+. +| -|+++.+++ +.++++.....|-.... .|. -...+.|.-.-+.-+.
T Consensus 170 Gt~Gd~~~fSF~~~K~it--tgEGGav~tnd~ela~k~~~lr~hG~~~~~-----~~~------y~~~~~G~N~rm~~iq 236 (374)
T COG0399 170 GSFGDIGAFSFHATKNLT--TGEGGAVVTNDEELAEKARSLRNHGLSRDA-----VFK------YLHEELGYNYRLTEIQ 236 (374)
T ss_pred ccccceEEEEecCCCCcc--ccCceEEEeCCHHHHHHHHHHHHhCcCCCc-----ccc------ceeeecccccCHHHHH
Confidence 3 589999998 6666 45 456666553 34444332222211100 000 0011223222233333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
+..++..++++....++.+++++++.+.|+++ +++.+...... ....-....+.+... ..+.+.+...|
T Consensus 237 AAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~------~~~~~p~~~~~--~~~~~~~~~i~~~~~---~~~R~~l~~~L 305 (374)
T COG0399 237 AAIGLAQLERLDEINERRREIAQIYAEALKGL------PGITLPPEPDG--AVHAWHLYTILVDEE---GISRDALMESL 305 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCccccCCCCC--ceeeeeeeEEEecCC---CCCHHHHHHHH
Confidence 33556666666555578888999999999988 55555443321 011122333333332 34556799999
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++.||. .+.++.|-+.+..+.. .+..+-....+.+......+++.++..-+.+|+++++++|++++.+
T Consensus 306 ~~~gi~--~~~~~~P~~~~~~~~~----------~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~ 373 (374)
T COG0399 306 KEAGVG--AVVYFRPLHLQPAYRQ----------LGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS 373 (374)
T ss_pred HhCCCC--ceEEeeccccchhhhc----------ccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999887 3333333222210000 0000000111122233478999999999999999999999998753
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-17 Score=179.67 Aligned_cols=301 Identities=14% Similarity=0.101 Sum_probs=209.1
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc---
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--- 146 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--- 146 (815)
.+.+++.+.+.+...+. ....+|+....+... .+++-..++++++.+ +...-+||+|+|+|+.+++.+..+
T Consensus 71 ~~~~~~~a~~~~~~~~~-~nl~d~~~~p~a~~~----E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~ 144 (460)
T COG0076 71 PTRVPPVAAELLVSALN-KNLGDPDESPAAAEL----EERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWR 144 (460)
T ss_pred CCCCHHHHHHHHHHHHh-hcCCCcccChhHHHH----HHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHH
Confidence 44455555555555444 345566655556665 788999999999996 344589999999999988877653
Q ss_pred -----CCC------cEEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccE--EEEeccc
Q psy16512 147 -----NEG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSL--FVYPAES 211 (815)
Q Consensus 147 -----~~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~l--v~i~~~~ 211 (815)
..+ .+|++...|.|+.....+++-.- .++.++ +..+|++++++++. ..|.. |+.+..+
T Consensus 145 ~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~~~~id~~~l~~~i~-------~~t~~g~vV~~aGt 217 (460)
T COG0076 145 KRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPTDYRIDVDALEEAID-------ENTIGGVVVGTAGT 217 (460)
T ss_pred HHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccCccccCHHHHHHHHH-------hhccCceEEEEecC
Confidence 011 28888889998877666654333 667666 67888888887664 44444 9999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-------CCCCCCCcEEEEccccccccCCcceE
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-------DLKQHQPDFISISFYKMFGYPTGLGA 284 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-------dl~~~~~D~vv~S~~K~~g~p~G~G~ 284 (815)
+++|.+.|+++|+++|+ ++++|+|||+|.+....++ ++...++|.++.++||++..|.|+|+
T Consensus 218 T~~G~iDdi~~ia~ia~-----------~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~ 286 (460)
T COG0076 218 TDTGSIDDIEELADIAE-----------EYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGV 286 (460)
T ss_pred CCCCccCCHHHHHHHHH-----------HcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceE
Confidence 99999999999999999 8999999999987665543 22233689999999999998999999
Q ss_pred EEEecc-cccccC---cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHH
Q psy16512 285 LIVKQK-SAHVLN---KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFEL 358 (815)
Q Consensus 285 l~~~~~-~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l 358 (815)
++++++ ...... ..+.+++.. ...-..++.+....+++.+.+..+...|- .+ +++.++
T Consensus 287 il~rd~e~l~~~~~~~~~yl~~~~~----------------~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~ 350 (460)
T COG0076 287 VLFRDEEALRRILIFADYYLPGGGI----------------PNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLEL 350 (460)
T ss_pred EEEECHHHhhhhhhcccccCCCCCc----------------CceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHH
Confidence 999987 332221 222222110 00111234444456666666666643332 23 889999
Q ss_pred HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 359 ~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
++++.+.|++. +.++++.+.. .++++|++++... ...+....+++.|..+..
T Consensus 351 a~~la~~l~~~------~~~e~~~~p~-------l~~V~fr~~~~~~---~~~~~~~~~~~~gw~v~~ 402 (460)
T COG0076 351 ARYLAEELEKL------GDFELVNEPE-------LPIVAFRLKDDED---TLADLSERLDRRGWQVPA 402 (460)
T ss_pred HHHHHHHHHhC------CCcEeecCCc-------cceEEEEcCCccc---chhchHHHHHhcCceeec
Confidence 99999999998 6799997654 7999999854321 011245566677877754
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-16 Score=171.05 Aligned_cols=333 Identities=13% Similarity=0.086 Sum_probs=194.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~ 183 (815)
.+++.+.+++++|++. +++|+|+|+|+.+++.++..++|| ||++..+|++........+... .+++++++ .++
T Consensus 33 ~~~~e~~la~~~g~~~----~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~~~~d 108 (376)
T TIGR02379 33 SRRCETWLENRTGTKK----ALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNID 108 (376)
T ss_pred HHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCCC
Confidence 7888999999998743 899999999999999988458999 9999988888765554443333 66666543 456
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.++++ ++++|++|+ ++|++|...|+++|.++|+ ++|++||+|++|+.|.. .+....
T Consensus 109 ~~~le~~-------i~~~tk~Ii---p~~~~G~~~d~~~I~~la~-----------~~~i~vIeDaa~~~g~~-~~~~~~ 166 (376)
T TIGR02379 109 ETLIESA-------ITHRTKAIV---PVHYAGVACDMDTIMALAN-----------KHQLFVIEDAAQGVMST-YKGRAL 166 (376)
T ss_pred HHHHHHh-------cCcCceEEE---EeCCCCCccCHHHHHHHHH-----------HCCCEEEEECccccCCc-cCCccc
Confidence 6666653 346789986 4568899999999999999 89999999999998764 333333
Q ss_pred C--CcEEEEcccc--ccccCC-cceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 264 Q--PDFISISFYK--MFGYPT-GLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 264 ~--~D~vv~S~~K--~~g~p~-G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
+ .|+.++|||+ .+. +. ..|+++.+ +++.++++.....|....... ..... .+ .....|...-..-+.
T Consensus 167 g~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~-~~----~~~~~g~n~~~~~~~ 239 (376)
T TIGR02379 167 GSIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIREKGTNRSQFF-RGEVD-KY----TWRDIGSSYLPSELQ 239 (376)
T ss_pred CCCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHHhCCCCcccc-ccCCC-cc----eeeeecccCCccHHH
Confidence 3 3888899875 444 32 25777776 456666654432221110000 00000 00 000011111111111
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC-CCCCCCCCcccceEEEEEecCCCCccCHHHHHHh
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH-DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~-~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
+..++..+.++....++.+++++++.+.|..+.+. ..+++.. +.. ......++.+.+.. . .+.+++.+.
T Consensus 240 Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~~~~~---~~~~~~~~~~~---~~~~~~~~~i~~~~--~--~~r~~l~~~ 309 (376)
T TIGR02379 240 AAYLWAQLEQADRINQDRLATWQLYQDALKPLEEK---GIIELPSIPNG---CQHNAHMFYIKLKD--E--DDRNELIKY 309 (376)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCcC---CeeeCCCCCCC---CeeeeEEEEEEECC--c--CCHHHHHHH
Confidence 22333444444333466677777788888765110 0122221 111 01111233344432 1 245679999
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
|.++||.++.+.. +.+.++.+ +.+.. +.......+......+.+.++...+++|+++++++|++++
T Consensus 310 L~~~gI~~~~~~~--p~~~~~~~--------~~~~~---~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 310 LKEQEIMAVFHYV--PLHSSPAG--------RYFGR---FHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL 375 (376)
T ss_pred HHHCCCCccccCc--CCCcchhH--------HhhCC---CCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999875432 22221110 00000 0000011112224679999999999999999999999864
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-17 Score=182.21 Aligned_cols=202 Identities=14% Similarity=0.105 Sum_probs=122.5
Q ss_pred hhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHH-HHHHhHcC---CCCCceeEEecCCchhhHHHH
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMR-TKILQYFN---TDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r-~~la~~~g---~~~~~~~iv~t~g~t~al~~~ 140 (815)
+........++..+.++.+......|..|..... . .+++. +.+.+..+ .++++.+|++|+|+++|+..+
T Consensus 99 l~~g~p~~~~~~~~~~~~~~~~~~~Y~~p~g~~~---~----~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 99 YVIDQLGFDPDAFLYEMCDGIIGDNYPVPDRMLP---H----SEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred hcCCCCCCCCCHHHHHHHHHhhcCCCCCCCCCHH---H----HHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 3333344455666777766654333333432111 1 22222 23333322 233322499999999999998
Q ss_pred Hhh-----hccCCCc-EEEecCCCcchhhHHHHhhccc-eE--EcCch-------hhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 141 SEY-----FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IY--SFSVD-------DARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 141 ~~a-----l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v--~~~~~-------~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+.+ +. ++|| |++..+.|+.+.......+... .+ +.+.+ ...+.+.+++ ..++++++
T Consensus 172 ~~~l~~~~ll-~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~-------~~~~~~ka 243 (521)
T TIGR03801 172 FDSLKANELL-KKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEK-------LRDPSIKA 243 (521)
T ss_pred HHHHhHhhcC-CCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHH-------hcCCCCcE
Confidence 887 45 8999 8899988877766555543222 33 33322 1234444443 34578999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCC--CeEEEEecccccCC-CCCCCCC-C-CCcEEEEccccccccC
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGS-NMLDLKQ-H-QPDFISISFYKMFGYP 279 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~-~~~dl~~-~-~~D~vv~S~~K~~g~p 279 (815)
|++++|+||||.+++.+++.++++ .|+++ +++||+|.++..-. ...++.. . ..-+++.|++|.|| .
T Consensus 244 i~l~nP~NPTG~vls~e~l~~I~~--------ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg-~ 314 (521)
T TIGR03801 244 LFVVNPSNPPSVAMSDESIEKIVD--------IVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFG-A 314 (521)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHH--------HHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhcc-C
Confidence 999999999999999666555433 22254 99999998865221 1111111 1 23478889999999 6
Q ss_pred Cc--ceEEEEecc
Q psy16512 280 TG--LGALIVKQK 290 (815)
Q Consensus 280 ~G--~G~l~~~~~ 290 (815)
+| +||++++++
T Consensus 315 ~G~RlG~i~~~~~ 327 (521)
T TIGR03801 315 TGWRLGTIALHKD 327 (521)
T ss_pred chhhhhhhhcCch
Confidence 68 899998865
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=154.60 Aligned_cols=342 Identities=15% Similarity=0.129 Sum_probs=225.8
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
.+.+++++.+++.+.-+.....+--......++....+....+.+++++|.+. +-+|+|+-+|-.+++.++. .+|
T Consensus 26 GGiLt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~----~R~t~GARe~KfavMhal~-~~g 100 (382)
T COG1103 26 GGILTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDE----VRVTAGAREAKFAVMHALC-KEG 100 (382)
T ss_pred cCcCCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCce----eeecccchhhHHHHHHHhc-cCC
Confidence 44667777777766432211111110011222334457788888999999865 8899999999999999999 999
Q ss_pred c-EEEecCCCcchhhHHHHhhccc-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
| +|+....|.+.+-+++.++... .+|-. ++..++++...+.|.++.......+.+..++|+....|.+.|.+.+++
T Consensus 101 d~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ 180 (382)
T COG1103 101 DWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAK 180 (382)
T ss_pred CEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHH
Confidence 9 8888888887766655544333 33321 233556666666555444444455899999999999999999999999
Q ss_pred HhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceE
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTV 305 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~ 305 (815)
+|+ ++|+++++.+|+.+|..|++....++||++.|.||....-.-+|+|.++.+..+.+-+.. +-
T Consensus 181 ic~-----------e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S--g~-- 245 (382)
T COG1103 181 ICR-----------EYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS--GR-- 245 (382)
T ss_pred HHH-----------HcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc--cc--
Confidence 999 999999999999999999999999999999999997773323899999988776442111 00
Q ss_pred EEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCC
Q psy16512 306 KISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTD 385 (815)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~ 385 (815)
.|. ..+--+-..|.--+.+..+.+++-...+.-.......+.++|+.+.|.++ .|++..+...
T Consensus 246 -------~~~----~KEvellGCT~rGapivTlmASfP~V~eRVkrWdeEv~kaR~fv~elEki------gg~~qlG~rP 308 (382)
T COG1103 246 -------AFP----KKEVELLGCTVRGAPIVTLMASFPHVVERVKRWDEEVEKARWFVAELEKI------GGVKQLGERP 308 (382)
T ss_pred -------ccc----cceeeeecccccCchHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHhCCCC
Confidence 000 00111223444445555555666554433222255566788899999988 5677665432
Q ss_pred CCCCCcccceEEEEEecC--------CCCccCHHHHHHhhhcCCcEe-ccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 386 YGESKYQGNIVNFNLLHK--------DGTYYGYSEVQNLANLKKIQL-RTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 386 ~~~~~~~~~i~~f~~~~~--------~~~~~~~~~v~~~l~~~gI~v-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
...-++.|..+.. .+.. .+.+.|.++||.- ++|
T Consensus 309 -----k~HdLm~Fetp~f~eIakk~~r~gy----FlY~ELK~RgI~GI~~G----------------------------- 350 (382)
T COG1103 309 -----KNHDLMKFETPVFHEIAKKHKRKGY----FLYEELKKRGIHGIQPG----------------------------- 350 (382)
T ss_pred -----cccceeeecCchHHHHHHhCcCCce----eeHHHHHhcCccccccC-----------------------------
Confidence 2345666665421 1122 2556666666641 111
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. +.++.+|.-. -++|++++.++++++++..
T Consensus 351 ---------~-Tk~~K~svyG-l~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 351 ---------Q-TKYFKLSVYG-LSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred ---------c-eeEEEEEeec-CCHHHHHHHHHHHHHHHHh
Confidence 1 3678888643 3789999999999998654
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=189.13 Aligned_cols=311 Identities=11% Similarity=0.018 Sum_probs=203.5
Q ss_pred hhhhHHHHHHHHHhHcCCCCCceeEEecC-CchhhHHHHHhhhcc---C---CCc--EEEecCCCcchhhHHHHhhccc-
Q psy16512 103 CVSEIDQMRTKILQYFNTDSDHYSVIFTS-GATSAIKTVSEYFEF---N---EGS--FIYLTDNHTSVLGMRELVKTNQ- 172 (815)
Q Consensus 103 ~~~~~~~~r~~la~~~g~~~~~~~iv~t~-g~t~al~~~~~al~~---~---~gd--vv~~~~~h~s~~~~~~~~~~~g- 172 (815)
..+.+.++++.+++++|.+. +.+-+ +++.|..+++.++.- . +++ +|++...|.+.... +...|
T Consensus 541 ~lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a~~~Gi 613 (954)
T PRK12566 541 YRAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---AQMAGM 613 (954)
T ss_pred HHHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---HHHCCC
Confidence 34458899999999999876 44444 444455455555431 1 232 78888899766433 33344
Q ss_pred ---eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 173 ---IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 173 ---~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
.++.+.++.+|+++++++++ ..++++.+|+++++++..+...|+++|++++| ++|++|++|+
T Consensus 614 eVv~Vp~D~~G~iDle~L~a~I~----~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah-----------~~Galv~vDg 678 (954)
T PRK12566 614 RVVIVECDPDGNVDLDDLKAKAA----AAGDRLSCLMITYPSTHGVYEEGIREICEVVH-----------QHGGQVYMDG 678 (954)
T ss_pred EEEEeccCCCCCcCHHHHHHHhh----ccCCCEEEEEEEecCcCceecchHHHHHHHHH-----------HcCCEEEEEe
Confidence 56677677888888887543 23367889999999988877788999999999 8999999999
Q ss_pred ccccCCCCCC-CCCCCCcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 250 ATYCGSNMLD-LKQHQPDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 250 a~~~g~~~~d-l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
++..+...++ ...+++|++++++||||++|.|.|..++.. ...+.+.+.+.++...+ .. .. +-..
T Consensus 679 A~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d---~~---------G~-~~r~ 745 (954)
T PRK12566 679 ANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVP---VE---------GP-DPNN 745 (954)
T ss_pred eChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcC---CC---------CC-CCCC
Confidence 9988776666 467899999999999999999888877766 44444555544332110 00 00 0012
Q ss_pred CCCC---hhHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE-
Q psy16512 328 GTVN---YLAIISLKYGFDTMEKKRKSF----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN- 399 (815)
Q Consensus 328 gt~~---~~~~~al~~al~~l~~~~~~~----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~- 399 (815)
|+.+ +.+...+..++.++..+|..+ .....+++|+.++|.+. ..+.. .+.. ....+-+.+.
T Consensus 746 ga~S~~~~gsa~~l~~A~~Yi~~lG~eLk~aa~~ailnAnYla~rL~~~------~~v~~-~~~~----~~~~hEfii~~ 814 (954)
T PRK12566 746 GAVSAAPWGSASILPISWMYIAMMGPQLADASEVAILSANYLANQLGGA------FPVLY-RGRN----ERVAHECILDL 814 (954)
T ss_pred CceeecccchHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhHhh------CCCCc-CCCC----CCeeeEEEEEc
Confidence 3332 233333567778887777655 22355788888888764 12222 2111 0101112222
Q ss_pred --EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 400 --LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 400 --~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
+++. ...+..++.+.|.++||....-++ + + .+.+||+.+.
T Consensus 815 ~~l~~~--~g~~~~dvakRL~d~Gihapt~~f--P--------------------------------v--~~~LmIepTE 856 (954)
T PRK12566 815 RPLKAQ--TGISEEDVAKRLMDYGFHAPTMSF--P--------------------------------V--PGTLMVEPTE 856 (954)
T ss_pred cccccc--cCCCHHHHHHHHHHCCcEEeEEee--c--------------------------------c--CCEEEEEeee
Confidence 2221 123445688888899998654211 0 0 3789999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy16512 478 ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 478 ~~t~edi~~lv~~L~~~~~~ 497 (815)
+++++|+|+|+++|.++..+
T Consensus 857 ~eskeEIDrf~eAL~~I~~e 876 (954)
T PRK12566 857 SESKAELDRFVEAMLSIRAE 876 (954)
T ss_pred eCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987655
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-16 Score=185.22 Aligned_cols=309 Identities=12% Similarity=0.064 Sum_probs=196.1
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCch-hhHH---HHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-e
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGAT-SAIK---TVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-I 173 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t-~al~---~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~ 173 (815)
.+.+.++.+++++++|.+. +.+.+|++ +|.. +++..+.+++|+ ++++...|++.......++... .
T Consensus 541 l~~i~e~q~~l~eltG~d~----~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~ 616 (954)
T PRK05367 541 RELIDQLEAWLAEITGYDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVV 616 (954)
T ss_pred HHHHHHHHHHHHHHHCCCC----EEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEE
Confidence 3448899999999999863 66666554 3332 344444334554 8888999988765544332222 5
Q ss_pred EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 174 YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 174 v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++++.++.++.+++++++. ....++.+|+++++++..+...|+++|+++|| ++|++++||+++..
T Consensus 617 v~~d~~G~iD~~~L~~~i~----~~~~~la~V~it~pst~G~~e~~I~eI~~i~h-----------~~G~~v~VDgA~~~ 681 (954)
T PRK05367 617 VACDENGNIDLDDLRAKAE----EHADNLAAIMITYPSTHGVFEETIREICEIVH-----------EHGGQVYLDGANMN 681 (954)
T ss_pred ECCCCCCCcCHHHHHHHHh----ccCCCeEEEEEEcCCCCeeecCCHHHHHHHHH-----------HcCCEEEEECcChh
Confidence 6666667788888776543 11235788888998887444589999999999 89999999999976
Q ss_pred CCCCCC-CCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 254 GSNMLD-LKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 254 g~~~~d-l~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+...+. ...+++|++++|.||||+.|.| +|++++++.+. +.+.+...... . .. -..
T Consensus 682 al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~----p~lpg~~v~~~--~----------~~--~~~ 743 (954)
T PRK05367 682 AQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLA----PFLPGHPVQIA--G----------GE--TGI 743 (954)
T ss_pred hccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccccc----ccCCCCccCcC--C----------CC--CCc
Confidence 644333 3367899999999999876665 67999986543 44433321100 0 00 001
Q ss_pred CCCC---hhHHHHHHHHHHHHHhhhhh-H----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE
Q psy16512 328 GTVN---YLAIISLKYGFDTMEKKRKS-F----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 328 gt~~---~~~~~al~~al~~l~~~~~~-~----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
|+.. +.+...+..+..++..+|.. + ++...+++++.++|++. ..+...++.. ...+..++.+.
T Consensus 744 g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~------~~~~~~~~~~---~~~~e~i~~~~ 814 (954)
T PRK05367 744 GAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH------YPVLYTGANG---RVAHECILDLR 814 (954)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh------cCccccCCCC---CcccceEEEee
Confidence 2222 22233444566666666643 2 55557999999999764 1222222211 11223344442
Q ss_pred -EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 400 -LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 400 -~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
++...+ +...++.+.|.++||...+-++ + . .+.+||++..+
T Consensus 815 ~~~~~~g--~~~~di~krL~d~G~~~~t~~~--p---------------------------------v-~~~l~i~ptE~ 856 (954)
T PRK05367 815 PLKESTG--ITVDDIAKRLIDYGFHAPTMSF--P---------------------------------V-AGTLMVEPTES 856 (954)
T ss_pred cccccCC--CCHHHHHHHHHHCCCeEeecCC--c---------------------------------c-CCEEEEEeeec
Confidence 221111 3345799999999998765221 0 0 37899999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q psy16512 479 SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~ 496 (815)
++.+|+|+|+++|.++..
T Consensus 857 ~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 857 ESKAELDRFCDAMIAIRA 874 (954)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999987643
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-16 Score=173.53 Aligned_cols=318 Identities=12% Similarity=0.055 Sum_probs=199.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCch------
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVD------ 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~------ 179 (815)
+.++++.+++++|.+. +++|+|+++|+.+++.++. ++||.|++...+++.......++... .++++++
T Consensus 55 ~~~Leeaia~~~g~~~----vv~t~~Gt~Al~la~~al~-~pGD~V~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~ 129 (431)
T cd00617 55 FYDLEDAVQDLFGFKH----IIPTHQGRGAENILFSILL-KPGRTVPSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQEL 129 (431)
T ss_pred HHHHHHHHHHHHCCCe----EEEcCCHHHHHHHHHHHhC-CCCCEEccCCcccchHHHHHhCCCEeEEEecccccccccc
Confidence 7899999999999853 9999999999999999997 99996665555555555555544443 5555432
Q ss_pred ----hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccChHHH---HHHhhccccccccccCCCCeEEEEeccc
Q psy16512 180 ----DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYPLSWC---NTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 180 ----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~l~~I---~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+.+|++.++++|+ +...+++++|+++.++|++ |..++.+.| .++|+ ++|++||.|+++
T Consensus 130 ~pf~gniD~e~Le~~I~---~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~-----------~~gi~li~DaAr 195 (431)
T cd00617 130 IPFKGNIDVAKLEKLID---EVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAH-----------KYGIPVVLDAAR 195 (431)
T ss_pred cCCCCCcCHHHHHHHhC---cccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEchh
Confidence 2367777776553 1112348999999999998 999987755 66666 999999999997
Q ss_pred ccC-----------CCCCCCCC------CCCcEEEEccccccccCCcceEEEEecc-cccccCcccccCceEEEEecCCc
Q psy16512 252 YCG-----------SNMLDLKQ------HQPDFISISFYKMFGYPTGLGALIVKQK-SAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 252 ~~g-----------~~~~dl~~------~~~D~vv~S~~K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
..+ ....++.. ...|.+++|++|.++.|. .|+++.+++ ++++++......
T Consensus 196 ~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~-GG~i~~~d~~l~~~~~~~~~~~----------- 263 (431)
T cd00617 196 FAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNI-GGFLALRDDELYEEARQRVVLY----------- 263 (431)
T ss_pred hHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCcc-ceEEEeCcHHHHHHHHHhcccc-----------
Confidence 653 11111111 147899999999877565 368888874 666553211000
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCccc
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQG 393 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~ 393 (815)
+.....|..+...+.++..+|+..... ...++..+.++++.+.|.+. |+.+..|.+ +
T Consensus 264 --------~~~~~~gG~~~r~~~A~A~gL~e~~~~-~~l~~~~~~r~~l~~~L~~~-------G~~v~~P~G-------g 320 (431)
T cd00617 264 --------EGFVTYGGMAGRDMEALAQGLREAVEE-DYLRHRVEQVRYLGDRLDEA-------GVPIVEPAG-------G 320 (431)
T ss_pred --------CCccccccccHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHC-------CCCccCCCc-------c
Confidence 001123444555555555566442111 11244455668899999987 677776654 6
Q ss_pred ceEEEEEecC----CCCccCHHHHH-HhhhcCCcEe-ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 394 NIVNFNLLHK----DGTYYGYSEVQ-NLANLKKIQL-RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 394 ~i~~f~~~~~----~~~~~~~~~v~-~~l~~~gI~v-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.+.+++... ....++...+. +++.+.||.+ .-|++- ++.+++. ++. . ...
T Consensus 321 h~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~--------~~~~~~~-----------~~~---~-~~~ 377 (431)
T cd00617 321 HAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFS--------AGRDPNT-----------GEN---K-YPE 377 (431)
T ss_pred eEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeeccee--------cccCCCC-----------Ccc---c-CCc
Confidence 6777776531 11222222344 6678899885 334321 1111100 000 0 001
Q ss_pred ceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 468 TGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 468 ~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
-..+|+.+.-- -|.+++++++++|..++.+....
T Consensus 378 ~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~~ 412 (431)
T cd00617 378 LELVRLAIPRRVYTQDHMDYVAAAVIALYERREDI 412 (431)
T ss_pred cceeEEeccccccCHHHHHHHHHHHHHHHhhHhhC
Confidence 36799998742 27899999999999988775554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=171.34 Aligned_cols=310 Identities=14% Similarity=0.104 Sum_probs=198.4
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCchhhHHHHHhhhccCCC--c
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGATSAIKTVSEYFEFNEG--S 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~t~al~~~~~al~~~~g--d 150 (815)
++.+.+++.+.+..... ....+ .... ..++.++++++++.+ ++. ++|++|+++|+..++..+. .+| +
T Consensus 61 ~p~v~~ai~~~~~~~~~--~~~~~-~~~~----~~~la~~l~~~~~~~~~~~--v~~~~sgsea~~~al~~~~-~~g~~~ 130 (398)
T PRK03244 61 HPAVVEAVTRQLATLGH--VSNLF-ATEP----QIALAERLVELLGAPEGGR--VFFCNSGAEANEAAFKLAR-LTGRTK 130 (398)
T ss_pred CHHHHHHHHHHHHhccC--ccCcc-CCHH----HHHHHHHHHHhCCCCCCCE--EEEeCchHHHHHHHHHHHH-HHCCCe
Confidence 57778887776654211 11111 1112 457888999998854 244 9999999999999998776 456 3
Q ss_pred EEEecCCCcchh-hHHHHhhccc-----------eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 151 FIYLTDNHTSVL-GMRELVKTNQ-----------IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 151 vv~~~~~h~s~~-~~~~~~~~~g-----------~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+|.....|+... .......... ...+.. .+++.+++ .+.+++++|+++.++|++|.+.
T Consensus 131 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~-------~~~~~~~aviiep~~~~~G~~~ 200 (398)
T PRK03244 131 IVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY---GDVDALAA-------AVDDDTAAVFLEPIQGEAGVVP 200 (398)
T ss_pred EEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC---CCHHHHHH-------hhcCCeEEEEEecccCCCCCcC
Confidence 666655544432 2222211100 111111 13333433 2235789999999999999999
Q ss_pred C----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCC----CCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 219 P----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSN----MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 219 ~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
| +++|.++|+ ++|+++|+|+++.. |.. ........+|++ +++|++++...+|++++++
T Consensus 201 ~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~ig~~~~~~ 267 (398)
T PRK03244 201 PPAGYLAAAREITD-----------RHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPIGACLAFG 267 (398)
T ss_pred CCHHHHHHHHHHHH-----------HcCCEEEEeccccCCcccchHHhhhhhCCCCCEE--EEchhhhCCcccEEEEEcH
Confidence 8 778888888 89999999999752 211 112233457865 6679998322389999998
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++.+.+.+... ......|.+...++.++++.+... ...++.+++.+++.+.|+++
T Consensus 268 ~~~~~~~~~~~------------------------~~t~~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~L~~~ 322 (398)
T PRK03244 268 PAADLLTPGLH------------------------GSTFGGNPVACAAALAVLDTIASE-GLLENAERLGEQLRAGIEAL 322 (398)
T ss_pred HHHhhccCCCC------------------------cCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhc
Confidence 87655532110 001134556677777777766532 22388899999999999886
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
.+ |.+.-+ ...+.++.+.++... ...+.+.|.++||.+++..
T Consensus 323 ~~----~~~~~v--------~g~g~~~~i~~~~~~-----~~~~~~~l~~~Gv~~~~~~--------------------- 364 (398)
T PRK03244 323 GH----PLVDHV--------RGRGLLLGIVLTAPV-----AKAVEAAAREAGFLVNAVA--------------------- 364 (398)
T ss_pred CC----CceeeE--------eeccEEEEEEEeccH-----HHHHHHHHHHCCeEEeecC---------------------
Confidence 21 222111 123778888875321 2347788888999986520
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.||++++...+++||++++++|++++.+
T Consensus 365 ------------------~~~iR~~p~~~~t~~~i~~~~~~l~~~l~~ 394 (398)
T PRK03244 365 ------------------PDVIRLAPPLIITDAQVDAFVAALPAILDA 394 (398)
T ss_pred ------------------CCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence 267999999989999999999999998753
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.9e-16 Score=175.21 Aligned_cols=333 Identities=11% Similarity=0.113 Sum_probs=188.5
Q ss_pred chhhhhhhhccccc----chhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGAGVY----SQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~~~~----p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+.... .+++.+++.+++......++.+. ....+. ..++++.|+++++. +. +++++ +
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~----~~~l~~~la~~~~~--~~--~~~~s-G 114 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQI----LKDLEEALSELFGA--SV--LTFTS-C 114 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHH----HHHHHHHHHHHhCC--CE--EEECC-h
Confidence 34567777654443 68888888887764210122211 122333 78999999999987 32 55554 4
Q ss_pred hhhHHHHHhhhc---cCCCc--EEEe-cCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEE
Q psy16512 134 TSAIKTVSEYFE---FNEGS--FIYL-TDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFV 206 (815)
Q Consensus 134 t~al~~~~~al~---~~~gd--vv~~-~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~ 206 (815)
++|+..++..+. ..+|+ +|+. ...|+++........... .+.++.. +++.+++++ .+++++++
T Consensus 115 ~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~---d~~~l~~~~-------~~~~~~~v 184 (402)
T PRK07505 115 SAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN---DLDALEDIC-------KTNKTVAY 184 (402)
T ss_pred HHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC---CHHHHHHHH-------hcCCCEEE
Confidence 567766654322 12233 5444 467887644333332222 3333322 344444432 34578999
Q ss_pred EecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCC---CC--CCCCcEEEEcccccc
Q psy16512 207 YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLD---LK--QHQPDFISISFYKMF 276 (815)
Q Consensus 207 i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~d---l~--~~~~D~vv~S~~K~~ 276 (815)
++.++||+|.+.|+++|.++|+ ++|+++|+|++|+.+. .... +. ..+..+++.|++|.|
T Consensus 185 l~~p~~~~G~~~~~~~i~~l~~-----------~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~ 253 (402)
T PRK07505 185 VADGVYSMGGIAPVKELLRLQE-----------KYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF 253 (402)
T ss_pred EEecccccCCcCCHHHHHHHHH-----------HcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhh
Confidence 9999999999999999999999 8999999999985421 0111 11 112346777999999
Q ss_pred ccCCcceEEEE-ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 277 GYPTGLGALIV-KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 277 g~p~G~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
+ .+| |++++ +++.++.+..... .....++++..++.++.++++.+.+.. .
T Consensus 254 ~-~~G-g~~~~~~~~~~~~~~~~~~----------------------~~t~~~~~~~~a~aa~~a~l~~~~~~~-----~ 304 (402)
T PRK07505 254 G-ASG-GVIMLGDAEQIELILRYAG----------------------PLAFSQSLNVAALGAILASAEIHLSEE-----L 304 (402)
T ss_pred h-ccC-eEEEeCCHHHHHHHHHhCC----------------------CceeCCCCCHHHHHHHHHHHHHHhccC-----c
Confidence 9 434 77665 4455544422110 011234567777777777777544321 1
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~ 435 (815)
.++++++.+.++.+ +.+......+ ....+..+.+... .....+.+.|.++||.++...+.. .
T Consensus 305 ~~~~~~l~~~~~~~------~~~~~~~~~g-----~~~~i~~~~~~~~----~~~~~~~~~l~~~Gi~v~~~~~p~---~ 366 (402)
T PRK07505 305 DQLQQKLQNNIALF------DSLIPTEQSG-----SFLPIRLIYIGDE----DTAIKAAKQLLDRGFYTSPVFFPV---V 366 (402)
T ss_pred HHHHHHHHHHHHHH------HHHHHhcCCC-----CCCCEEEEEeCCH----HHHHHHHHHHHHCCCeEeeecCCC---C
Confidence 11222233322222 0000000011 0122223332211 012347788889999998642211 0
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
. ....+|||+++...|++|+++++++|++++.++
T Consensus 367 ~-----------------------------~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 367 A-----------------------------KGRAGLRIMFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred C-----------------------------CCCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 0 002589999999999999999999999987543
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-15 Score=167.58 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=199.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~ 183 (815)
++++++.+++++|.+. ++.++|+|.|+.+++.++..++|| |+++..+++++......++... ++++++ +..++
T Consensus 27 ~~~fE~~~a~~~g~~~----~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id 102 (363)
T PF01041_consen 27 VEEFEKEFAEYFGVKY----AVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNID 102 (363)
T ss_dssp HHHHHHHHHHHHTSSE----EEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-
T ss_pred HHHHHHHHHHHhCCCe----EEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcC
Confidence 8999999999999754 888899999999999999888999 9999999888877777666555 777774 45788
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC--CC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LK 261 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~ 261 (815)
++.++++++ ++|++|+++|.. |...|+++|.++|+ ++|++||.|++|+.|...-. +.
T Consensus 103 ~~~~~~~i~-------~~t~ai~~~h~~---G~~~d~~~i~~~~~-----------~~~i~lIeD~a~a~g~~~~g~~~G 161 (363)
T PF01041_consen 103 PEALEKAIT-------PKTKAILVVHLF---GNPADMDAIRAIAR-----------KHGIPLIEDAAQAFGARYKGRPVG 161 (363)
T ss_dssp HHHHHHHHH-------TTEEEEEEE-GG---GB---HHHHHHHHH-----------HTT-EEEEE-TTTTT-EETTEETT
T ss_pred HHHHHHHhc-------cCccEEEEecCC---CCcccHHHHHHHHH-----------HcCCcEEEccccccCceeCCEecc
Confidence 888887554 789999999766 99999999999999 89999999999999874321 11
Q ss_pred CCCCcEEEEccc--cccccCCc-ceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 262 QHQPDFISISFY--KMFGYPTG-LGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 262 ~~~~D~vv~S~~--K~~g~p~G-~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
. ..|+.++||| |.+. +| -|+++++++. .++++... ..|... .....+. .....|...-++-+.
T Consensus 162 ~-~gd~~~fSf~~~K~i~--~geGG~v~~~~~~~~~~~~~~~-~~g~~~--~~~~~~~-------~~~~~g~n~rm~~~~ 228 (363)
T PF01041_consen 162 S-FGDIAIFSFHPTKIIT--TGEGGAVVTNDPELAERARALR-NHGRSR--DAFRRYR-------HELPPGYNFRMSELQ 228 (363)
T ss_dssp S-SSSEEEEESSTTSSS---SSS-EEEEESTHHHHHHHHHHT-BTTEET--SECSTTE-------ESSSS--B-B-BHHH
T ss_pred C-CCCceEecCCCCCCCc--CCCCeeEEecHHHHHHHhhhhh-ccCcCc--ccccccc-------ccccCCcccccHHHH
Confidence 2 2599999997 7765 34 4777777643 33332211 111110 0000000 000011111123333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC-cccceEEEEEecCCCCccCHHHHHHh
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK-YQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~-~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
+..++..+.++....++.+++++++.+.|..+ +++........ .. .....+.+.+..... .+.+.+.+.
T Consensus 229 AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~~------~~~~~~~~~~~--~~~~~~~~f~i~~~~~~~--~~rd~l~~~ 298 (363)
T PF01041_consen 229 AAIGLAQLKRLDEIIARRRENAQRYREALAGI------PGIKPPPIPDG--AERSSYYRFPIRLPDEAL--ADRDELVEA 298 (363)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTG------TTEEEEGCGTT--TEEBCESSEEEEETCCGC--STHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC------CCccccccccc--cccccccccccccccccc--chHHHHHHH
Confidence 33455666666555688889999999999998 67765543220 01 122334444443211 345679999
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
|.++||.++... ..+-+..+.+.... ..........+......+.+.++...+.+|+++++++|+
T Consensus 299 L~~~GI~~~~~~-~~pl~~~~~~~~~~----------~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 299 LRARGIETRPHY-PKPLHRQPVYRSYP----------YYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp HHHTTBEEBCST-SSCGGGSGGGTTGE----------EEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred HHHCCCcccccc-cCchhhhHHHHhcC----------ccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 999999998754 11221111110000 000000011111223689999999999999999999885
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-16 Score=154.21 Aligned_cols=314 Identities=13% Similarity=0.064 Sum_probs=216.8
Q ss_pred hhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
|++.++-++.+.+ +...+.+. .....+ ...++..||++.+.++ .++-+++-+|+..++.++. .|.|
T Consensus 84 Peii~a~~~alee-yGaGlssvrfIcGtq~i----Hk~LE~kiAqfh~rED----~ilypscfdANag~feail-~pedA 153 (417)
T KOG1359|consen 84 PEIINAGQKALEE-YGAGLSSVRFICGTQDI----HKLLESKIAQFHGRED----TILYPSCFDANAGAFEAIL-TPEDA 153 (417)
T ss_pred hHHHHHHHHHHHH-hCCCccceeEEecchHH----HHHHHHHHHHHhCCCc----eEEeccccccchHHHHHhc-Chhhh
Confidence 6667776666543 34445554 556666 7889999999999754 3444555568888888887 8888
Q ss_pred EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcc
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNH 230 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~ 230 (815)
|+-...+|.|++.-+.++++.+.+.+ ..++..+ .++...+-++|+.....++.|.+.|+++|.++++
T Consensus 154 vfSDeLNhASIIdGirLckry~h~dv--------~~l~~~l---~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~-- 220 (417)
T KOG1359|consen 154 VFSDELNHASIIDGIRLCKRYRHVDV--------FDLEHCL---ISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAK-- 220 (417)
T ss_pred hhccccccchhhhhhHHHhhhccchh--------HHHHHHH---HHhhhheEEEEEecceeccCCCcccHHHHHHHHH--
Confidence 66667899999998888887652221 1122111 1233456899999999999999999999999999
Q ss_pred ccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 231 VFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 231 ~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
+||.++++|.+|+.|..- +.. .-++|++..++.|.+|+-.| ||...++.++..++..-
T Consensus 221 ---------kYgaLlfiDecHaTgf~G~tGrGt~E~~~v-m~~vdiinsTLgKAlGga~G-Gyttgp~~li~llrqr~-- 287 (417)
T KOG1359|consen 221 ---------KYGALLFIDECHATGFFGETGRGTAEEFGV-MGDVDIINSTLGKALGGASG-GYTTGPKPLISLLRQRS-- 287 (417)
T ss_pred ---------hcCcEEEEeecccceeecCCCCChHHHhCC-CCcceehhhhhhhhhcCCCC-CCccCChhHHHHHHhcC--
Confidence 999999999999876421 111 13589999999999995544 88888887765443110
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY 381 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~ 381 (815)
...+.+.+.+...+.....+++.+........+.++..+++++..... |+.+.
T Consensus 288 --------------------RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~a-------GftIs 340 (417)
T KOG1359|consen 288 --------------------RPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAA-------GFTIS 340 (417)
T ss_pred --------------------CceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-------Cceec
Confidence 001223344444444444566665544344578888888998888775 88887
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
+.. .+|..+.+.+.... ..+.+.|.+.||.|-.-++...+..
T Consensus 341 g~~--------hPI~pv~lGda~lA----~~~ad~lLk~Gi~Vigfs~PvVP~g-------------------------- 382 (417)
T KOG1359|consen 341 GAS--------HPICPVMLGDARLA----SKMADELLKRGIYVIGFSYPVVPKG-------------------------- 382 (417)
T ss_pred CCC--------CCccceecccHHHH----HHHHHHHHhcCceEEeecCCcCCCC--------------------------
Confidence 643 47777777654322 2467788899999865433222211
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...||+.++..+|+||||++++++.++.
T Consensus 383 ------kariRVqiSAaHt~edid~~i~Af~~vg 410 (417)
T KOG1359|consen 383 ------KARIRVQISAAHTEEDIDRLIEAFSEVG 410 (417)
T ss_pred ------ceEEEEEEehhcCHHHHHHHHHHHHHHH
Confidence 2579999999999999999999998864
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=170.04 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=193.9
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--C--
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--N-- 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~-- 147 (815)
..++.+.+++.+.+.... +..+.+ .... ..++++++++++|.+ + +++++|+++|+.+++..+.. .
T Consensus 43 ~~~p~v~~a~~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~~--~--~~~~~sg~~a~~~a~~~~~~~~~~~ 111 (379)
T TIGR00707 43 HAHPKLVEALKEQLEKLV--HVSNLY-YTEP----QEELAEKLVEHSGAD--R--VFFCNSGAEANEAALKLARKYTGDK 111 (379)
T ss_pred CCCHHHHHHHHHHHhhcc--cccccc-CCHH----HHHHHHHHHhhCCCC--E--EEEeCCcHHHHHHHHHHHHHHhhcc
Confidence 344777888777665421 111111 1233 788999999999975 3 99999999999988886521 2
Q ss_pred --CCc-EEEecCCCcchhhHHHHhhccc-----eEEcCchhhh----cchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 148 --EGS-FIYLTDNHTSVLGMRELVKTNQ-----IYSFSVDDAR----NMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 148 --~gd-vv~~~~~h~s~~~~~~~~~~~g-----~v~~~~~~~~----~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
+++ +++....|.............. ..++..+... +++.+++. +.+++++|++++++|++|
T Consensus 112 ~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-------~~~~~~~v~~~p~~~~~g 184 (379)
T TIGR00707 112 GKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKA-------IDDETAAVIVEPIQGEGG 184 (379)
T ss_pred CCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHH-------hhhCeeEEEEEccccCCC
Confidence 256 7777765543322222211111 1111111111 34444442 335689999988888888
Q ss_pred cc-cC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEEEccccccccC-CcceEE
Q psy16512 216 TK-YP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFISISFYKMFGYP-TGLGAL 285 (815)
Q Consensus 216 ~~-~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv~S~~K~~g~p-~G~G~l 285 (815)
.. .+ +++|.++|+ ++++++++|+++. ++.. +.+.....+|++ +++|.++ + ..+|++
T Consensus 185 ~~~~~~~~l~~i~~l~~-----------~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~-~G~riG~~ 250 (379)
T TIGR00707 185 VNPASAEFLKALREICK-----------DKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLG-GGVPIGAT 250 (379)
T ss_pred CccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEccccc-CCcccEEE
Confidence 75 34 566777787 8999999999976 3221 111222346754 6799999 5 238999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFY 365 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~ 365 (815)
+.++++++.+.+... ....+.+...+.++.++++.+... ...++.+++++++++.
T Consensus 251 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~aa~aaL~~~~~~-~~~~~~~~~~~~~~~~ 305 (379)
T TIGR00707 251 LAKEEVAEAFTPGDH------------------------GSTFGGNPLACAAALAVLEVIEKE-RLLENVKEKGDYFKER 305 (379)
T ss_pred EEcHHHHhhhcCCCC------------------------CCCCCCCHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHH
Confidence 998887765533210 001134667777888888876532 2237888888888888
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
|.++. ....... ....+.++.+.++.. ..++.+.|.++||.++++.
T Consensus 306 l~~~~-------~~~~~~~----~~~~g~~~~~~~~~~------~~~~~~~l~~~Gv~v~~~~----------------- 351 (379)
T TIGR00707 306 LEELG-------KNYPNKE----VRGKGLMLGIELEAP------CKDIVKKALEKGLLVNCAG----------------- 351 (379)
T ss_pred HHHHH-------hhCCCCc----cccCceEEEEEecCc------HHHHHHHHHHCCcEEeeCC-----------------
Confidence 87651 1110000 012366777776532 1357888999999997531
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|++++...+++++++++++|+++
T Consensus 352 ----------------------~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 352 ----------------------PKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred ----------------------CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 268999999888999999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=167.46 Aligned_cols=209 Identities=11% Similarity=0.165 Sum_probs=146.8
Q ss_pred cchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHH
Q psy16512 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 59 ~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~ 138 (815)
..+.+|+++.+.+++++++.+++.+.+.. +.|........ ..+..++.+++.+++++|++. .++++|++.|+.
T Consensus 84 atg~v~~tNlg~s~l~~~v~eav~~~~~~--~~~le~~l~~g-~~g~r~~~~e~~lA~l~Gae~----a~vv~sgtaAl~ 156 (464)
T PRK04311 84 ATGVVLHTNLGRALLSEAAIEAVTEAARG--YSNLEYDLATG-KRGSRDRALAALLCALTGAED----ALVVNNNAAAVL 156 (464)
T ss_pred CCccEEeccCCCCCCCHHHHHHHHHHHhc--ccccccchhhc-ccchHHHHHHHHHHHHhCCCe----EEEECCHHHHHH
Confidence 34567788888899999999999776543 22322111111 112337899999999999863 567777889999
Q ss_pred HHHhhhccCCCc-EEEecCCCcch---hhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSV---LGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~---~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+++.++ .+|+ ||++..+|..+ ..+...+...| .+.++.++..+++++++ .++++|++|++.|++|
T Consensus 157 l~l~~l--~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~-------aI~~~TklV~~vh~sN 227 (464)
T PRK04311 157 LALNAL--AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQ-------AINENTALLLKVHTSN 227 (464)
T ss_pred HHHHHh--CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHH-------hcCccCeEEEEEcCCC
Confidence 888765 6788 88888766532 22334445556 44454433344455554 4457899999999999
Q ss_pred C--Cc--cccChHHHHHHhhccccccccccCCCCeEEEEeccccc---------CCCCCCC---CCCCCcEEEEcccccc
Q psy16512 213 F--SG--TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---------GSNMLDL---KQHQPDFISISFYKMF 276 (815)
Q Consensus 213 ~--tG--~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---------g~~~~dl---~~~~~D~vv~S~~K~~ 276 (815)
+ +| ...|+++|+++|+ ++|+++++|++++. +..+ ++ .++++|++++|+||++
T Consensus 228 ~~i~G~~~~~dl~eI~~lak-----------~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l~~GaDiv~fSg~K~L 295 (464)
T PRK04311 228 YRIEGFTKEVSLAELAALGK-----------EHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELLAAGVDLVTFSGDKLL 295 (464)
T ss_pred ccccccCCcCCHHHHHHHHH-----------HcCCeEEEECCCcccccchhccCCCCC-chhhHHhcCCcEEEecCcccc
Confidence 8 34 5789999999999 89999999985321 1222 22 2368999999999999
Q ss_pred ccCCcceEEEEecccccccC
Q psy16512 277 GYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 277 g~p~G~G~l~~~~~~~~~l~ 296 (815)
|+| ..|+++++++++++++
T Consensus 296 gGp-~~G~i~g~~~li~~l~ 314 (464)
T PRK04311 296 GGP-QAGIIVGKKELIARLK 314 (464)
T ss_pred cCC-ceEEEEEcHHHHHHHh
Confidence 977 4899999988877654
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-15 Score=167.62 Aligned_cols=323 Identities=15% Similarity=0.146 Sum_probs=205.2
Q ss_pred cchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc-cCCCc
Q psy16512 73 YSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE-FNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~-~~~gd 150 (815)
.++.+.+++.+++.... +..+ ...... ..++.+.++++++.+.+. ++|++|+++|+..++..+. ..+++
T Consensus 53 ~~p~v~~a~~~~~~~~~~~~~~---~~~~~~----~~~l~~~l~~~~~~~~~~--v~~~~sgsea~~~al~~~~~~~~~~ 123 (413)
T cd00610 53 NHPEVVEALKEQLAKLTHFSLG---FFYNEP----AVELAELLLALTPEGLDK--VFFVNSGTEAVEAALKLARAYTGRK 123 (413)
T ss_pred CCHHHHHHHHHHHHhCcCccCc---ccCCHH----HHHHHHHHHHhCCCCCCE--EEEcCcHHHHHHHHHHHHHHHcCCC
Confidence 56778888877764321 1111 012333 778999999999976665 9999999999999998773 24556
Q ss_pred -EEEecCCCcc-hhhHHHHhhcc-----------ceEEcCch--------hhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 151 -FIYLTDNHTS-VLGMRELVKTN-----------QIYSFSVD--------DARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 151 -vv~~~~~h~s-~~~~~~~~~~~-----------g~v~~~~~--------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++....|.. ........... ..+.+..+ ...+++.++++++ ....++++|+++.
T Consensus 124 ~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~vi~~p 199 (413)
T cd00610 124 KIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE----EHPEEVAAVIVEP 199 (413)
T ss_pred eEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh----cCCCCEEEEEEcc
Confidence 7776655444 33333332211 01222211 2224455554332 1113578899998
Q ss_pred ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccC-CC----CCCCCCCCCcEEEEccccccccCC
Q psy16512 210 ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SN----MLDLKQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 210 ~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~----~~dl~~~~~D~vv~S~~K~~g~p~ 280 (815)
+++++|...| +++|.++|+ ++|+++|+|+++... .. ..+.....+|++ |++|++++..
T Consensus 200 ~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g~ 266 (413)
T cd00610 200 IQGEGGVIVPPPGYLKALRELCR-----------KHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGGL 266 (413)
T ss_pred ccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCcc
Confidence 9999999988 888888888 899999999997631 11 112222346764 6679999433
Q ss_pred cceEEEEeccccccc--CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16512 281 GLGALIVKQKSAHVL--NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358 (815)
Q Consensus 281 G~G~l~~~~~~~~~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l 358 (815)
.+|+++.++++++.+ .... .....+.+...+.++.++++.+.. ....++..++
T Consensus 267 ~~g~~~~~~~~~~~~~~~~~~------------------------~~~t~~~~~~~~~a~~a~l~~l~~-~~~~~~~~~~ 321 (413)
T cd00610 267 PLGAVLGREEIMDAFPAGPGL------------------------HGGTFGGNPLACAAALAVLEVLEE-EGLLENAAEL 321 (413)
T ss_pred ccEEEEEcHHHHHhhccCCCC------------------------CCCCCCcCHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 389999988777654 1100 011224556677777788888765 2233888999
Q ss_pred HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 359 ~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
.+++.+.|+++... .+.+... ...++++.+.+..... .......+.+.|.++||.+.++.
T Consensus 322 ~~~l~~~l~~~~~~--~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~------ 385 (413)
T cd00610 322 GEYLRERLRELAEK--HPLVGDV--------RGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG------ 385 (413)
T ss_pred HHHHHHHHHHHHhh--CCcEEEe--------ecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC------
Confidence 99999988876210 0111111 1247888888865311 00123457778888999987642
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+.+|++++..+|++|+++++++|++++
T Consensus 386 ---------------------------------~~~lR~~~~~~~t~~~i~~~~~~l~~~l 413 (413)
T cd00610 386 ---------------------------------GNVIRLLPPLIITEEEIDEGLDALDEAL 413 (413)
T ss_pred ---------------------------------CCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence 1679999999999999999999998753
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=173.51 Aligned_cols=292 Identities=13% Similarity=0.082 Sum_probs=175.4
Q ss_pred HHHHHHHHHhHcC------CCCCceeEE--ecCCchhhHHHHHh---hhccCCCc-EEEecCCCcchhhHHHHhhccc-e
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVI--FTSGATSAIKTVSE---YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv--~t~g~t~al~~~~~---al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~ 173 (815)
..++|+++++++. .++++ |+ .|.|+++|+.+++. ++. ++|| |++..+.|+.+....+.++... .
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~~--v~~~~t~G~~~al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~ 150 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEKR--IATVQALSGTGALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIFKSAGLNVKE 150 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccCe--EEEeeccCcchHHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCceee
Confidence 6788888988752 34554 77 48999999988875 555 8999 8898988877766555544333 4
Q ss_pred EEcCc--hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 174 YSFSV--DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 174 v~~~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
++..+ +..++.+.++++++ ...+++++++++++|||||..++.+++.++++ .|++|++++|+|.++
T Consensus 151 v~l~~~~~~~~d~~~l~~~~~----~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y 218 (404)
T PTZ00376 151 YRYYDPKTKGLDFDGMLEDLR----TAPNGSVVLLHACAHNPTGVDPTEEQWKEIAD--------VMKRKNLIPFFDMAY 218 (404)
T ss_pred ccccCcccCCcCHHHHHHHHH----hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHhCCcEEEEehhh
Confidence 45522 24566666665442 11245788889999999999999888766655 344899999999886
Q ss_pred ccCCC---------CCCCCCCC-CcEEEEccccccccCCc--ceEEE---EecccccccCcccccCceEEEEecCCcccc
Q psy16512 252 YCGSN---------MLDLKQHQ-PDFISISFYKMFGYPTG--LGALI---VKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 252 ~~g~~---------~~dl~~~~-~D~vv~S~~K~~g~p~G--~G~l~---~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.--.. ...+.... .-+++.||+|.|+ ++| +||++ .+++.++.+......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-~~GlRvG~~~~~~~~~~~~~~l~~~~~~--------------- 282 (404)
T PTZ00376 219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMG-LYGERIGALHIVCANKEEAANVLSQLKL--------------- 282 (404)
T ss_pred cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccc-ccccccceEEEEeCCHHHHHHHHHHHHH---------------
Confidence 42110 00111111 3478889999999 667 89984 355433322111000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHH---Hh----hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTM---EK----KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~----~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
..+...++.+.....++..+++.- .. .....+++++.++.+.+.|+++... .++..+.+.+
T Consensus 283 -----~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~~~~~~p~g---- 350 (404)
T PTZ00376 283 -----IIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSP---GDWEHIINQI---- 350 (404)
T ss_pred -----HHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcccccccCc----
Confidence 000111233444445554544321 11 1111256778888888888875100 1233333332
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.+. .....+++.++||.+.+| +
T Consensus 351 ---g~f~~~~~~--------~~~~~~L~~~~~v~v~p~-----------------------------------------~ 378 (404)
T PTZ00376 351 ---GMFSFTGLT--------KEQVERLIEKYHIYLLDN-----------------------------------------G 378 (404)
T ss_pred ---eEEEecCCC--------HHHHHHHHHhCCEeecCC-----------------------------------------C
Confidence 333443331 122445556669987542 3
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|||++. -+.+++++++++|++++.
T Consensus 379 --Ris~~~-~~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 379 --RISVAG-LTSKNVDYVAEAIHDVVR 402 (404)
T ss_pred --eEEEec-cCHHhHHHHHHHHHHHHh
Confidence 999964 478999999999998753
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-15 Score=153.77 Aligned_cols=324 Identities=15% Similarity=0.109 Sum_probs=200.1
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
.+.+.+++.+.+....+ | .+..... +..+|+++|++++ .++++ |++|+|.++||++++.++. +
T Consensus 80 s~~a~~Av~~al~Sgk~-N---~Yaps~G----~~~AR~AVAeYl~~~l~~kl~a~D--V~ltsGC~qAIe~~i~~LA-~ 148 (447)
T KOG0259|consen 80 SQEAEQAVVDALRSGKG-N---GYAPSVG----ILPARRAVAEYLNRDLPNKLTADD--VVLTSGCSQAIELAISSLA-N 148 (447)
T ss_pred CHHHHHHHHHHHhcCCC-C---CcCCccc----cHHHHHHHHHHhhcCCCCccCcCc--eEEeccchHHHHHHHHHhc-C
Confidence 46667777776654221 1 1222233 7789999999976 33555 9999999999999999999 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---h
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---L 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l 220 (815)
||. |+++.+.||-+.......+-.. ++.+-++ ..+|++.++. .++++|.++++.+|+||+|.+++ +
T Consensus 149 p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~vea-------l~DENT~AivviNP~NPcGnVys~~HL 221 (447)
T KOG0259|consen 149 PGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEA-------LADENTVAIVVINPNNPCGNVYSEDHL 221 (447)
T ss_pred CCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHH-------hhccCeeEEEEeCCCCCCcccccHHHH
Confidence 998 9999988876543333322222 3333333 2455555554 44789999999999999999998 5
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccc---cCCC-CCCCCCC---CCcEEEEccccccccCCc--ceEEEEeccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---CGSN-MLDLKQH---QPDFISISFYKMFGYPTG--LGALIVKQKS 291 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---~g~~-~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~~~~ 291 (815)
++|+++|+ ++|+++|.|+.+. +|.. .+.+..+ -+-+.+.|.+|-+-.| | +||+++++..
T Consensus 222 ~kiae~A~-----------klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VP-GWRlGWi~~hD~~ 289 (447)
T KOG0259|consen 222 KKIAETAK-----------KLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVP-GWRLGWIALHDPR 289 (447)
T ss_pred HHHHHHHH-----------HhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccC-CceeeeEEEeccc
Confidence 55666666 9999999998743 2322 2333333 2456777999944437 7 9999987643
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccc--cCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHH
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF--EDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFK 367 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~ 367 (815)
- .++....--+ ...+ ....+++....|+..-|+--.+..- ...-++..++..++.|+
T Consensus 290 g-vf~~~~~~q~------------------~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk 350 (447)
T KOG0259|consen 290 G-VFRDTKVVQG------------------IKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLK 350 (447)
T ss_pred c-cccchHHHHH------------------HHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHh
Confidence 1 1111100000 0001 1123344444444443332221111 12667888889999999
Q ss_pred hccccCCCCcEE-EcCCCCCCCCCcccceEEEEEecC--CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 368 QLSYSNGQPLVE-LYHDTDYGESKYQGNIVNFNLLHK--DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 368 ~l~~~~~~p~~~-l~~~~~~~~~~~~~~i~~f~~~~~--~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
++ |++. ...|.+ ..++++.+.-. ..-.-+.+...++.++..+.+-+|..+. +
T Consensus 351 ~I------P~l~cp~kPeg-------~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~---------~--- 405 (447)
T KOG0259|consen 351 DI------PCLTCPVKPEG-------CMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFG---------L--- 405 (447)
T ss_pred cC------CCcccCcCCCc-------ceEEEeccchhhhccccccHHHHHHHhhhcceEEecccccc---------C---
Confidence 99 7877 344443 34444443211 0111123346666689999888875432 1
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|++++. ..+.++...+.|+++..
T Consensus 406 -----------------------~nw~Ri~i~~--~~~~leea~~Rik~Fc~ 432 (447)
T KOG0259|consen 406 -----------------------KNWLRIVITV--EEEMLEEAFSRIKEFCD 432 (447)
T ss_pred -----------------------CCeEEEEEcc--ChHHHHHHHHHHHHHHH
Confidence 4999999985 45788888888888653
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=166.20 Aligned_cols=209 Identities=10% Similarity=0.165 Sum_probs=147.3
Q ss_pred chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 60 KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 60 ~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
.+.+|+++.+.+++++.+++++.+.+.. +.|......... .+..++.+++.+++++|++. .++++|++.|+.+
T Consensus 80 tg~v~~tNlg~s~l~~~vieAv~~~~~~--y~~l~~~l~~g~-~g~r~~~le~~lA~l~gae~----alvv~sg~aAi~l 152 (454)
T TIGR00474 80 TGVVLHTNLGRAPLAEEAIEAVTDAARG--YSNLEYDLETGK-RGSRYSHVEGLLCELTGAED----ALVVNNNAAAVLL 152 (454)
T ss_pred CCcEEeccCCCCCCCHHHHHHHHHHHhc--ccchhccccccc-cchHHHHHHHHHHHHhCCCc----EEEECCHHHHHHH
Confidence 4567888888999999999999877653 333321111011 12337899999999999865 3455677789988
Q ss_pred HHhhhccCCCc-EEEecCCCcch---hhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSV---LGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~---~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.++ .+|| ||++..+|+.+ ..+...+...| ...++.++..+++++++ +++++|++|++.+++|+
T Consensus 153 ~l~~l--~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~~~~l~dle~-------aI~~~T~lv~~~h~sN~ 223 (454)
T TIGR00474 153 ALNTL--AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTNRTHLKDYED-------AITENTALLLKVHTSNY 223 (454)
T ss_pred HHHHh--CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCCCCCHHHHHH-------hcCcCCEEEEEEccCcc
Confidence 88664 6888 88888776432 22334455566 44454433334455554 44578999999999998
Q ss_pred C--c--cccChHHHHHHhhccccccccccCCCCeEEEEecccc---------cCCCCC--CCCCCCCcEEEEcccccccc
Q psy16512 214 S--G--TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---------CGSNML--DLKQHQPDFISISFYKMFGY 278 (815)
Q Consensus 214 t--G--~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---------~g~~~~--dl~~~~~D~vv~S~~K~~g~ 278 (815)
+ | ...|+++|+++|| ++|+++++|++.+ ++..|. +...+++|++++|+||++|+
T Consensus 224 ~~~G~~~~~dl~~I~~la~-----------~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgG 292 (454)
T TIGR00474 224 RIVGFTEEVSIAELVALGR-----------EHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGG 292 (454)
T ss_pred cccCCCCCCCHHHHHHHHH-----------HcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCC
Confidence 5 6 5789999999999 8999999997632 223222 34457899999999999997
Q ss_pred CCcceEEEEecccccccC
Q psy16512 279 PTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 279 p~G~G~l~~~~~~~~~l~ 296 (815)
|. .|+++++++.++.++
T Consensus 293 p~-~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 293 PQ-AGIIVGKKELIERLK 309 (454)
T ss_pred Ce-EEEEEECHHHHHhhh
Confidence 84 799999988876553
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.2e-15 Score=165.17 Aligned_cols=342 Identities=13% Similarity=0.094 Sum_probs=198.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh--------ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF--------EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al--------~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++++.+++++|++. +++++|+|+|+.+++.++ ..++|| ||++..+|+++.......+... .+++
T Consensus 65 ~~~fe~~lA~~~g~~~----~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 65 NDAFEKKLAEFLGVRY----ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred HHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 7889999999999852 889999999999998876 347898 9999999988766555443322 4555
Q ss_pred Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 177 SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 177 ~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+. +..++++.++++ ++++|++|++++ ++|...++++|.++|+ ++|++||+|++|+.|+
T Consensus 141 d~~~~~id~~~le~~-------i~~~tkaVi~~~---~~G~p~dl~~I~~la~-----------~~gi~vIeDaa~a~G~ 199 (438)
T PRK15407 141 ELPTYNIDASLLEAA-------VSPKTKAIMIAH---TLGNPFDLAAVKAFCD-----------KHNLWLIEDNCDALGS 199 (438)
T ss_pred CCCcCCcCHHHHHHH-------cCcCCeEEEEeC---CCCChhhHHHHHHHHH-----------HCCCEEEEECccchhh
Confidence 53 334566666553 357899999986 4688999999999999 8999999999999997
Q ss_pred CCCC--CCCCCCcEEEEcccc--ccccCCcceEEEEecccccccCcccccCceEEEEecC------CcccccccCcc---
Q psy16512 256 NMLD--LKQHQPDFISISFYK--MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMAN------ENFHIKKDGLF--- 322 (815)
Q Consensus 256 ~~~d--l~~~~~D~vv~S~~K--~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~------~~~~~~~~~~~--- 322 (815)
..-+ +..+ .|+.++|||. .+....| |+++.+++.+...-+.+..+|........ ..+.......+
T Consensus 200 ~~~g~~~G~~-gd~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (438)
T PRK15407 200 TYDGRMTGTF-GDIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGY 277 (438)
T ss_pred hcCCeeeecc-CceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccc
Confidence 6433 2223 3899999984 3432223 88888776543221222222211000000 00000000000
Q ss_pred -cc---ccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEE
Q psy16512 323 -EK---FEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVN 397 (815)
Q Consensus 323 -~~---~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~ 397 (815)
.. ...|.-.-++-+.+..++..+.++....++.+++++++.+.|+++ ++ +.+..... ....+...
T Consensus 278 ~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~------~~~~~~~~~~~----~~~~~~~~ 347 (438)
T PRK15407 278 DHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLASL------EDFLILPEATP----NSDPSWFG 347 (438)
T ss_pred cccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccccCcCCC----CCeeEEEE
Confidence 00 012222222333333556666666555588888889999999876 43 22221111 11123223
Q ss_pred EEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 398 FNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 398 f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
|.+.-.+...++.+++.+.|.++||..+.... .+-+.++++. ..... . .....+.+......+-+.++.
T Consensus 348 ~~i~~~~~~~~~Rd~l~~~L~~~GI~~~~~~~-~~~~~~p~~~--------~~~~~-~-~~~~P~ae~~~~~~l~LP~~~ 416 (438)
T PRK15407 348 FPITVKEDAGFTRVELVKYLEENKIGTRLLFA-GNLTRQPYFK--------GVKYR-V-VGELTNTDRIMNDTFWIGVYP 416 (438)
T ss_pred EEEEECCcCCCCHHHHHHHHHHCCCCccccCC-CccccChhhh--------hcCCC-C-CCCChHHHHHHhCeEEecCCC
Confidence 33221121124456799999999998765321 0111111110 00000 0 000011111123568888887
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q psy16512 478 ASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 478 ~~t~edi~~lv~~L~~~~~ 496 (815)
.-|++|+++++++|++++.
T Consensus 417 ~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 417 GLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 7799999999999999764
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-15 Score=164.10 Aligned_cols=334 Identities=14% Similarity=0.085 Sum_probs=195.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~ 183 (815)
.+++++.+++++|++ + +++++|+++|+.+++.++..++|| ||++..+|+++.......+... .+++++++ .++
T Consensus 33 ~~~~e~~la~~~g~~--~--~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~~~~d 108 (375)
T PRK11706 33 TRRCQQWLEQRFGSA--K--VLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDTMNID 108 (375)
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcC
Confidence 678888899999984 3 999999999999988877558999 9999989988766555443333 55666543 456
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.+++++ +++|++|+++ |++|...++++|.++|+ ++|+++|+|++|+.|.. .+....
T Consensus 109 ~~~le~~i-------~~~tk~i~~~---~~~G~~~~~~~i~~la~-----------~~~i~vIeD~a~a~g~~-~~~~~~ 166 (375)
T PRK11706 109 ETLIEAAI-------TPKTRAIVPV---HYAGVACEMDTIMALAK-----------KHNLFVVEDAAQGVMST-YKGRAL 166 (375)
T ss_pred HHHHHHhc-------CCCCeEEEEe---CCCCCccCHHHHHHHHH-----------HcCCEEEEECccccccc-cCCeee
Confidence 77766543 4678998876 46899999999999999 89999999999998863 222111
Q ss_pred --CCcEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 264 --QPDFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 264 --~~D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
..|+.++||| |.++ +..-|+++++ +++.++++.....|....... .. . .... .....|+.....-+.+
T Consensus 167 g~~~~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~-~--~~~~-~~~~~g~~~~~~~~~a 239 (375)
T PRK11706 167 GTIGHIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFF--RG-Q--VDKY-TWVDIGSSYLPSELQA 239 (375)
T ss_pred ecCcCEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhh--cc-C--CCcc-eeeecccccCcCHHHH
Confidence 2588889998 9887 5223545554 455554433322211100000 00 0 0000 0011233222222223
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
..++..+..+....++.+++.+++.+.|.++.. .+.+++...... ......++.+.++.. .+..++.+.|.
T Consensus 240 a~~~~ql~~l~~~~~~R~~~~~~~~~~L~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~r~~l~~~L~ 310 (375)
T PRK11706 240 AYLWAQLEAADRINQRRLALWQRYYDALAPLAE---AGRIELPSIPDD--CKHNAHMFYIKLRDL----EDRSALINFLK 310 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---CCeeecCCCCCC--CceeeEEEEEEECCc----CCHHHHHHHHH
Confidence 334444455433346677778888888876610 012333211110 011123444444321 23457899999
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
++||.++.... +.+....+. .+... ..+....+......+-+.++..-+++|+++++++|++++
T Consensus 311 ~~gI~~~~~~~--p~~~~~~~~--------~~~~~---~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 311 EAGIMAVFHYI--PLHSSPAGE--------RFGRF---HGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF 374 (375)
T ss_pred HCCCCccccCC--ccCcchhhH--------hcCCC---CCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence 99999875421 211111000 00000 000111112224678888888889999999999999864
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-15 Score=165.98 Aligned_cols=310 Identities=13% Similarity=0.128 Sum_probs=198.6
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-------
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF------- 146 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~------- 146 (815)
.+.+.+++.+++....+..+. . .... ..++.++++++++.+ . +++++++++|+..++..+..
T Consensus 59 ~~~i~~a~~~~~~~~~~~~~~--~-~~~~----~~~l~~~l~~~~~~~--~--~~~~~SGs~A~e~al~~a~~~~~~~~g 127 (401)
T PRK00854 59 HPKILAAMVEQAGRLTLTSRA--F-RNDQ----LAPLYEELAALTGSH--K--VLPMNSGAEAVETAIKAVRKWGYEVKG 127 (401)
T ss_pred CHHHHHHHHHHHhhccccccc--c-CCHH----HHHHHHHHHhhCCCC--E--EEEeCCcHHHHHHHHHHHHHHHHhccC
Confidence 677888887777643222211 1 1123 778999999998863 3 89999999999999988741
Q ss_pred -CCC--cEEEecC-CCcchhhHHHHhhcc------c-----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 147 -NEG--SFIYLTD-NHTSVLGMRELVKTN------Q-----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 147 -~~g--dvv~~~~-~h~s~~~~~~~~~~~------g-----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
.+| ++|+... .|.+........... + ...++. .+++.+++ .+.+++++|++++++
T Consensus 128 ~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~-------~i~~~~~aii~e~~~ 197 (401)
T PRK00854 128 VPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF---GDAEALEA-------AITPNTVAFLVEPIQ 197 (401)
T ss_pred CCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC---CCHHHHHH-------HhCCCeEEEEEcccc
Confidence 123 3666554 455443333211100 0 111111 13344443 334679999999999
Q ss_pred CCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCCC----CCCCCCCcEEEEccccccccCC-c
Q psy16512 212 NFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNML----DLKQHQPDFISISFYKMFGYPT-G 281 (815)
Q Consensus 212 n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~~----dl~~~~~D~vv~S~~K~~g~p~-G 281 (815)
|++|.+.| +++|.++|+ +||+++|+|+++. +|.... +.....+|++++| |++++.. -
T Consensus 198 ~~~G~~~~~~~~l~~l~~l~~-----------~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ 264 (401)
T PRK00854 198 GEAGVIIPPAGYFTRVRELCT-----------ANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYP 264 (401)
T ss_pred CCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCccC
Confidence 99999998 888888888 8999999999987 443321 1122357888764 9887321 2
Q ss_pred ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q psy16512 282 LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQY 361 (815)
Q Consensus 282 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~ 361 (815)
+|+++.++++++.+..... .... ..+....+++.++++.+... ...++.+++.++
T Consensus 265 ig~v~~~~~~~~~l~~~~~-----------------------~~t~-~~~~~~~aa~~a~L~~l~~~-~~~~~~~~~~~~ 319 (401)
T PRK00854 265 VSAVLSNSEVLGVLKPGQH-----------------------GSTF-GGNPLACAVARAALKVLTEE-GMIENAAEMGAY 319 (401)
T ss_pred eEEEEEcHHHHhcccCCCC-----------------------CCCC-CcCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHH
Confidence 7889998887765532110 0011 23666777777888876642 123888889999
Q ss_pred HHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCC
Q psy16512 362 TYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
+.+.|+++.. +.+.-. ...+.++.+.+..... ...++.+.|.++||.+...
T Consensus 320 l~~~L~~~~~----~~~~~~--------~g~g~~~~i~~~~~~~---~~~~~~~~L~~~GV~v~~~-------------- 370 (401)
T PRK00854 320 FLEGLRSIRS----NIVREV--------RGRGLMLAVELEPEAG---GARQYCEALKERGLLAKDT-------------- 370 (401)
T ss_pred HHHHHHhhcc----CceEEE--------eccceEEEEEEecCch---hHHHHHHHHHHCCeEEecC--------------
Confidence 9999988621 111111 1236677776643211 2245778888889998531
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+++++.+++++|++++++|++++.
T Consensus 371 -------------------------~~~~lR~~p~~~~t~e~i~~~i~~l~~~l~ 400 (401)
T PRK00854 371 -------------------------HDHTIRLAPPLVITREQVDWALEQIAKVLA 400 (401)
T ss_pred -------------------------CCCEEEEeCCcccCHHHHHHHHHHHHHHhh
Confidence 026899999999999999999999998763
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=170.63 Aligned_cols=292 Identities=12% Similarity=0.099 Sum_probs=176.4
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEc-
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF- 176 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~- 176 (815)
..++|+++++++. +++++-.|++|+|+++|+.++++++. .++|| |++..+.|+.+....+..+... .++.
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~ 150 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYY 150 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEecc
Confidence 6778888888752 24444013999999999999987664 27999 8898988877766555544333 4554
Q ss_pred Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 177 SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 177 ~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+. +..++++.++++++ ...++++++++++++||||..++.+++.++++ .|+++++++|+|.++.--.
T Consensus 151 ~~~~~~~d~~~l~~~~~----~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 151 DAATKGLDFDAMLADLS----QAPAGDVVLLHGCCHNPTGADLTPEQWDELAE--------LLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred ccccCccCHHHHHHHHH----hCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHhCCcEEEEeccccccc
Confidence 22 34567777765442 12244678888999999999999887666655 4448999999998864211
Q ss_pred C-----CCC---CCCC-CCcEEEEccccccccCCc--ceEEEE--e-cccccccCcccccCceEEEEecCCcccccccCc
Q psy16512 256 N-----MLD---LKQH-QPDFISISFYKMFGYPTG--LGALIV--K-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGL 321 (815)
Q Consensus 256 ~-----~~d---l~~~-~~D~vv~S~~K~~g~p~G--~G~l~~--~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (815)
. ... +... ..-+++.||+|.|+ ++| +||+++ . ++.+..+...+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~-~~GlRiG~~~~~~~~~~~~~~~~~~~~~-------------------- 277 (396)
T PRK09257 219 DGLEEDAYGLRAFAAAGLELLVASSFSKNFG-LYGERVGALSVVAEDAEEADRVLSQLKA-------------------- 277 (396)
T ss_pred cchHHHHHHHHHHHhcCCcEEEEEEcCCcCc-cccccceeEEEEeCCHHHHHHHHHHHHH--------------------
Confidence 0 000 1111 23477889999999 778 899984 2 2222111100000
Q ss_pred cccccCCCCChhHHHHHHHHHHHH------Hhhhh-hHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCccc
Q psy16512 322 FEKFEDGTVNYLAIISLKYGFDTM------EKKRK-SFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQG 393 (815)
Q Consensus 322 ~~~~~~gt~~~~~~~al~~al~~l------~~~~~-~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~ 393 (815)
..+...++++.....++...++.- .+.-. ..++.++.++.+.+.|+++. .+ ++.+..+.+ +
T Consensus 278 ~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~----~~~~~~~~~p~g-------g 346 (396)
T PRK09257 278 TIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKG----PSRDFDFIARQR-------G 346 (396)
T ss_pred HhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCcccccccc-------e
Confidence 000111233444444444444321 11111 12667777888888887751 01 244444432 4
Q ss_pred ceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEE
Q psy16512 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRI 473 (815)
Q Consensus 394 ~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRv 473 (815)
.++++.+. ...+.+++.++||.+.+ .+ |+
T Consensus 347 ~~~w~~l~--------~~~~~~l~~~~~V~~~p-----------------------------------------~~--ri 375 (396)
T PRK09257 347 MFSYSGLT--------PEQVDRLREEFGVYAVG-----------------------------------------SG--RI 375 (396)
T ss_pred EEEecCCC--------HHHHHHHHHcCCEEEcC-----------------------------------------CC--eE
Confidence 44444432 12467777899998742 13 99
Q ss_pred eccCCCCHHHHHHHHHHHHHH
Q psy16512 474 SYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 474 s~g~~~t~edi~~lv~~L~~~ 494 (815)
+++. -++++++++++.|+++
T Consensus 376 ~~~~-~~~~~i~~~~~~i~~~ 395 (396)
T PRK09257 376 NVAG-LNESNIDYVAEAIAAV 395 (396)
T ss_pred EEee-CCHHHHHHHHHHHHhh
Confidence 9864 4789999999999874
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=170.57 Aligned_cols=235 Identities=11% Similarity=0.064 Sum_probs=155.7
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.|++++ | +++++ |++|+|+++++.+++.++..++|| |++..+.|+.+.......+... .++++.
T Consensus 109 ~~~LR~aia~~~~~~~g~~~~~~~--I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~~~~~~~g~~~v~v~~~~ 186 (407)
T PLN02368 109 LPGVRKEVAEFIERRDGYPSDPEL--IFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYLEE 186 (407)
T ss_pred CHHHHHHHHHHHHHhcCCCCChhh--EEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeccc
Confidence 567888888776 5 45665 999999999999999988636899 9999988888776665544333 555554
Q ss_pred h--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 179 D--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 179 ~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
+ ..++++.++++++... ....+++++++++|+||||.+++.+++.++++ +|++++++||+|+++.-
T Consensus 187 ~~~~~~d~~~le~~i~~~~-~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~--------~a~~~~~~II~DE~Y~~l~y 257 (407)
T PLN02368 187 SENWGLDVNNLRQSVAQAR-SKGITVRAMVIINPGNPTGQCLSEANLREILK--------FCYQERLVLLGDEVYQQNIY 257 (407)
T ss_pred ccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEECCCCCCCccCCHHHHHHHHH--------HHHHcCCEEEEEcccccccc
Confidence 3 3466677766443100 01126899999999999999999888777665 44489999999988643
Q ss_pred -CCCC-CC-------CC----CCCCcEEEEcccccc-ccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcc
Q psy16512 254 -GSNM-LD-------LK----QHQPDFISISFYKMF-GYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 254 -g~~~-~d-------l~----~~~~D~vv~S~~K~~-g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
+..+ .+ +. ....-+++.||+|.| + .+| +||+++ ++++++.+....
T Consensus 258 ~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~-~~GlRiGy~i~~~~~~~li~~~~~~~--------------- 321 (407)
T PLN02368 258 QDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWG-ECGQRGGYFEMTNIPPKTVEEIYKVA--------------- 321 (407)
T ss_pred CCCCCcccHHHHHhhhcccccccceEEEEecCCccccc-CCccceEEEEEeCCCHHHHHHHHHHh---------------
Confidence 2111 11 10 111347778999998 6 568 899985 556655442211
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFDT-----------MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~-----------l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
.. ..+++.++..++.++++. ..+.....+..++.++.+.+.|+++ |++.+..|
T Consensus 322 ---------~~-~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~------~g~~~~~P 385 (407)
T PLN02368 322 ---------SI-ALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC------KNVVCNFT 385 (407)
T ss_pred ---------cc-cCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCeEeCCC
Confidence 01 123555666666666641 1111011266778888999999988 78887766
Q ss_pred C
Q psy16512 384 T 384 (815)
Q Consensus 384 ~ 384 (815)
.
T Consensus 386 ~ 386 (407)
T PLN02368 386 E 386 (407)
T ss_pred C
Confidence 5
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.9e-15 Score=158.39 Aligned_cols=310 Identities=15% Similarity=0.093 Sum_probs=183.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
...+...++++.|+.. ++..+++..|+..++..+. ..|+ +|.....|..... +.++..+.| .-.++.+
T Consensus 79 ~~~le~~iaal~ga~~----~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~--- 150 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAH----ALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD--- 150 (409)
T ss_pred hHHHHHHHHHHhCCce----EEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh---
Confidence 7788899999999865 4555566668888888888 7887 8888877766554 445555555 2233322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
++..+++ .+.++|++|++.+|.||+..+.|+++|+++|+ ++|++|+||++.+.+.. .+.-.
T Consensus 151 ~~~~~~~-------~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~-----------~~g~~vvVDnTf~~p~~-~~pL~ 211 (409)
T KOG0053|consen 151 DLKKILK-------AIKENTKAVFLESPSNPLLKVPDIEKLARLAH-----------KYGFLVVVDNTFGSPYN-QDPLP 211 (409)
T ss_pred hHHHHHH-------hhccCceEEEEECCCCCccccccHHHHHHHHh-----------hCCCEEEEeCCcCcccc-cChhh
Confidence 2223333 34568999999999999999999999999999 89999999999887743 33446
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|..|+|+|... .|.++.+ .+..++++... ....++++....+-+.
T Consensus 212 lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~------------------------~~lg~~~~p~~~~ll~ 267 (409)
T KOG0053|consen 212 LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQ------------------------EDLGWCEDPFDLFLLS 267 (409)
T ss_pred cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHH------------------------HHhcCCCCHHHHHHHh
Confidence 6899999999999996654 4667665 44444332111 2234456666666555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------cc--CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------YS--NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~~--~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.+++.+. .++++..+.+..+...|.+.+ |+ +.+|..++..... ....|. +.|.+.+..... .
T Consensus 268 Rglktl~---lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~~~---~g~~G~-l~~~~~~~~~~a---~ 337 (409)
T KOG0053|consen 268 RGLKTLH---LRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKRQK---KGGYGG-LSSVIFGNEEHA---K 337 (409)
T ss_pred cCcchhh---hhHHHHHHHHHHHHHHhhhCCceeEEEcCCCCCCccHHHHHhhh---cCCcce-EEEEEcCCHHHH---H
Confidence 5555433 233444444444555554441 11 1223222222110 112233 455444322111 1
Q ss_pred HHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
.+...|+-.-...+-|...+ ++....|.. ..++... .|..++.||+|+|..+.++-+..|.
T Consensus 338 kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~-~~e~~~~---------------~Gi~~~LVRvSVGiEd~~dL~~d~~ 401 (409)
T KOG0053|consen 338 KFYDALKLFTKAPSLGGNESLAEPPAIMTHAS-ELEEREK---------------FGIDPNLVRVSVGIEDIEDLIKDFQ 401 (409)
T ss_pred HHHHhhhhhhcccCcCccchhhcchhhhccCC-CHHHHHh---------------cCCCCCcEEEEeccCCHHHHHHHHH
Confidence 24445554444455553222 222222223 2222221 2667899999999755444455555
Q ss_pred HHHHH
Q psy16512 489 SFLNQ 493 (815)
Q Consensus 489 ~~L~~ 493 (815)
+||++
T Consensus 402 ~Al~~ 406 (409)
T KOG0053|consen 402 QALEK 406 (409)
T ss_pred HHHHh
Confidence 55544
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=166.46 Aligned_cols=284 Identities=15% Similarity=0.086 Sum_probs=184.4
Q ss_pred CChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc
Q psy16512 94 HGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 94 ~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g 172 (815)
+.+...... +.++++..|+.||++.. .++++|+|.++.+++.++. ++|| |++.+.+|-|++....+.+...
T Consensus 59 D~L~~p~G~----I~eAe~~aA~~fGAd~t---~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~ga~P 130 (417)
T PF01276_consen 59 DDLHDPEGI----IKEAEELAARAFGADKT---FFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILSGAIP 130 (417)
T ss_dssp BBTTTTBTH----HHHHHHHHHHHHTESEE---EEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHHTEEE
T ss_pred CcccCCccH----HHHHHHHHHHhcCCCeE---EEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHcCCeE
Confidence 333445555 89999999999999763 7889999999999999999 9999 9999999999998877777666
Q ss_pred -eEEcCch-----hhhcc-----hhhhhhhhhhhhhcCCC-ccEEEEecccCCCccccChHHHHHHhhccccccccccCC
Q psy16512 173 -IYSFSVD-----DARNM-----LNEFKESQENVENMRHS-NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR 240 (815)
Q Consensus 173 -~v~~~~~-----~~~~~-----~~~~~~l~~~~~~~~~~-t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~ 240 (815)
+++...+ ..+++ +.++++|. +....+ .+++++++| |..|..+|+++|+++|+ +
T Consensus 131 vyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~---~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h-----------~ 195 (417)
T PF01276_consen 131 VYIPPEDNEYGIIGGISPDEFNEEDIEEALK---EHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICH-----------K 195 (417)
T ss_dssp EEEEEEE-TTS-BEEB-GGGGSHHHHHHHHH---HCTTCHCESEEEEESS--TTSEEE-HHHHHHHHC-----------C
T ss_pred EEecCCccccCCccCCChhhhhHHHHHHHHH---hCccccCceEEEEeCC-CCCeEEECHHHHHHHhc-----------c
Confidence 4433221 12334 44554443 111111 456999887 46799999999999999 8
Q ss_pred CCeEEEEecccccCC----CCCCCCCCCCc-------EEEEccccccccCCcceEEEEeccc-c--cccCcccccCceEE
Q psy16512 241 SNCFVLLDAATYCGS----NMLDLKQHQPD-------FISISFYKMFGYPTGLGALIVKQKS-A--HVLNKTFYGGGTVK 306 (815)
Q Consensus 241 ~gi~vivD~a~~~g~----~~~dl~~~~~D-------~vv~S~~K~~g~p~G~G~l~~~~~~-~--~~l~~~~~g~~~~~ 306 (815)
++++|+||+||+.-. .+.+....++| +++-|.||.+++.+..++|.++.+. + ++++..+
T Consensus 196 ~~~~llvDEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l------- 268 (417)
T PF01276_consen 196 HGIPLLVDEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEAL------- 268 (417)
T ss_dssp TECEEEEE-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHH-------
T ss_pred cCCEEEEEccccccccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHH-------
Confidence 999999999987532 23334456889 9999999999988889999999875 3 2222111
Q ss_pred EEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-HhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCC
Q psy16512 307 ISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDT 384 (815)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~ 384 (815)
..+...+|+++.++++..+..++ ...|... ++..+++..++++|+++ +..++++++.+.
T Consensus 269 ----------------~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~---~~~~~~~~~~~~ 329 (417)
T PF01276_consen 269 ----------------SMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEAIELAEEFRKKINRL---NDIWGFKVLGPE 329 (417)
T ss_dssp ----------------HHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH---CCT-SSEESS-S
T ss_pred ----------------HHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc---CCCceEecCCcc
Confidence 23556789999999999999998 5666655 88888888899988442 111456666554
Q ss_pred CCCCC----------------------CcccceEEEEEecC------CCCccCHHHHHHhhhcCCcEecc
Q psy16512 385 DYGES----------------------KYQGNIVNFNLLHK------DGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 385 ~~~~~----------------------~~~~~i~~f~~~~~------~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
..... ...+.=+.+.+++. ....++-..+.+.|+++||++.-
T Consensus 330 ~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek 399 (417)
T PF01276_consen 330 DVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEK 399 (417)
T ss_dssp EECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SE
T ss_pred ccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEe
Confidence 21100 01122345555321 11224455688889888998854
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-14 Score=163.07 Aligned_cols=319 Identities=13% Similarity=0.139 Sum_probs=201.8
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+.-.+.+.+++.+++......+.. ..... ..++.++++++.+. +. ++|++++
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~---~~~~~----~~~l~~~l~~~~~~--~~--~~~~~SG 106 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRA---FHSDQ----LGPWYEKVAKLTGK--DM--VLPMNTG 106 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccc---cCCHH----HHHHHHHHHhcCCC--Ce--EEEcCCh
Confidence 4556777643 2235578888888877643221111 11122 56788888888764 23 8999999
Q ss_pred hhhHHHHHhhhcc--------CCC-c-EEEecC-CCcchhhHHHHhhccc-----------eEEcCchhhhcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--------NEG-S-FIYLTD-NHTSVLGMRELVKTNQ-----------IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~--------~~g-d-vv~~~~-~h~s~~~~~~~~~~~g-----------~v~~~~~~~~~~~~~~~~l 191 (815)
++|+..++..... .+| + +|.... .|.............. ...++.. +++.+++
T Consensus 107 seA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~-- 181 (396)
T PRK04073 107 AEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG---DLEALKA-- 181 (396)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC---CHHHHHH--
Confidence 9999988876531 134 3 666654 4544444433322111 1111111 2333333
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQ 262 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~ 262 (815)
.+.+++++|+++.++|++|.+.| +++|.++|+ ++|+++|+|+++. +|.. ..+...
T Consensus 182 -----~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~lli~DEv~~g~g~~g~~~~~~~~~ 245 (396)
T PRK04073 182 -----AITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCK-----------EENVLFIADEIQTGLGRTGKLFACDWDN 245 (396)
T ss_pred -----hcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEecchhCCCcCcHHHHhhhcC
Confidence 33467899999999999999988 667888888 8999999999976 3321 112333
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+|+++ ++|.+|++ | +|++++++++.+.+.... .....+.|..+.+++.+
T Consensus 246 ~~pdi~~--~sK~lg~g-g~~ig~~~~~~~i~~~~~~~~------------------------~~~t~~~~~~~~aaa~a 298 (396)
T PRK04073 246 VTPDMYI--LGKALGGG-VFPISCVAANRDILGVFTPGS------------------------HGSTFGGNPLACAVSIA 298 (396)
T ss_pred CCCCEEE--ecccccCC-CCcceEEEEcHHHHhhhcCCC------------------------CCCCCCCCHHHHHHHHH
Confidence 4578765 57998843 3 899999988776553211 00011345566777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+|+.+.+. ...++..++++++.+.|+++.+ +.+..+ ...+.++.+.+.. . ...+.+.|.++
T Consensus 299 aL~~~~~~-~l~~~~~~~~~~l~~~L~~l~~----~~i~~~--------~~~g~~~~~~~~~-~-----~~~~~~~l~~~ 359 (396)
T PRK04073 299 ALEVLEEE-KLPERSLELGEYFKEQLKEIDN----PMIKEV--------RGRGLFIGVELNE-P-----ARPYCEALKEE 359 (396)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHHhhcC----Ccccce--------ecceEEEEEEecc-h-----HHHHHHHHHHC
Confidence 88776543 1227888889999999987621 222211 2236777777642 1 12477778889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
||.+... ..++||+++++..|++|+++++++|++++
T Consensus 360 Gv~~~~~---------------------------------------~~~~iRi~p~l~~t~e~i~~~~~~l~~~l 395 (396)
T PRK04073 360 GLLCKET---------------------------------------HETVIRFAPPLVITKEELDWAFEKIKAVL 395 (396)
T ss_pred CeEEecC---------------------------------------CCCEEEEECCcccCHHHHHHHHHHHHHHh
Confidence 9997531 02689999999999999999999998864
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=149.42 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=124.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~ 181 (815)
++++++.++++++.+.+. +++++|+|+|+.+++.++. .+++ ++++...|++... ..+...| .++.+.+..
T Consensus 2 ~~~~~~~l~~~~~~~~~~--~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 2 LEELEEKLARLLQPGNDK--AVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYW--VAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHHcCCCCCc--EEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehh--hHHHhcCCEEEEeccCCCCc
Confidence 678999999999755555 9999999999999999997 7777 8898989888763 2333344 344443322
Q ss_pred hcch--hhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-
Q psy16512 182 RNML--NEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML- 258 (815)
Q Consensus 182 ~~~~--~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~- 258 (815)
...+ .+.+ ....++++++++++++|++|...|+++|.++|+ ++|+++|+|++++.+....
T Consensus 77 ~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~-----------~~~~~li~D~a~~~~~~~~~ 139 (170)
T cd01494 77 GGLDVAILEE------LKAKPNVALIVITPNTTSGGVLVPLKEIRKIAK-----------EYGILLLVDAASAGGASPAP 139 (170)
T ss_pred cchhhhhhhh------ccccCceEEEEEecCcCCCCeEcCHHHHHHHHH-----------HcCCEEEEeccccccccccc
Confidence 2211 2221 122467999999999999999999999999999 8999999999999877654
Q ss_pred --CCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 259 --DLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 259 --dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+....++|+++.|+||+|++ +|+|++++|
T Consensus 140 ~~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 140 GVLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred ccccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 45667899999999999995 689999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-14 Score=169.41 Aligned_cols=315 Identities=11% Similarity=0.035 Sum_probs=189.3
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-------CCCc-EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-------NEGS-FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-------~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
.+.+.++.+++++++|.+.. -++.++++.|..+.+.++.. ...+ ++++...|.+.-.....++..- .+
T Consensus 529 lq~i~elq~~l~eltGmd~~---Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V 605 (939)
T TIGR00461 529 QELIAQLEKWLCSITGFDAI---SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPV 605 (939)
T ss_pred HHHHHHHHHHHHHHHCCCCc---ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEe
Confidence 34488999999999999842 35555555554434433321 1123 7788889977644433332222 66
Q ss_pred EcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC-hHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 175 SFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP-LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~-l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+.+.++.+|+++++++++ ....++++|++++++| +|.+.| +++|+++|| ++|.++++|+++..
T Consensus 606 ~~d~~G~iDle~L~~~i~----~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah-----------~~G~~v~VDgAq~~ 669 (939)
T TIGR00461 606 NCDQDGNIDLVDLKNKAE----QHGDELAAVMVTYPST-HGVFEPTIQHACDIVH-----------SFGGQVYLDGANMN 669 (939)
T ss_pred ccCCCCCcCHHHHHHHHh----hcCCceEEEEEEeCCc-CceecccHHHHHHHHH-----------HcCCEEEEEecChh
Confidence 777778899998887553 1224799999999999 799877 999999999 88999999999977
Q ss_pred CCCC-CCCCCCCCcEEEEccccccccCC-----cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 254 GSNM-LDLKQHQPDFISISFYKMFGYPT-----GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 254 g~~~-~dl~~~~~D~vv~S~~K~~g~p~-----G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+... .+...+++|++++|.||+|++|. |+|++.+++++. +.+.|......... .. +.... +...
T Consensus 670 al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~----~~lPg~~v~~t~d~-~g----req~I-ga~s 739 (939)
T TIGR00461 670 AQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI----PFLPKHDVVSMITG-IG----GSKSI-GSVS 739 (939)
T ss_pred hCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch----hhcCCCcccccccC-CC----Ccccc-cccc
Confidence 4433 34467899999999999888444 579999997644 33333322110000 00 00000 1111
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhh-H----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKS-F----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~-~----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
+..+-+...+..+.-++..+|.. + +....+++|+.++|++. +++..+.. .....+-+.|++..
T Consensus 740 -~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~--------~~~l~~~~---~~~~~hEfv~~~~~ 807 (939)
T TIGR00461 740 -AAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH--------YPILFVGT---LKHVAHECILDLRP 807 (939)
T ss_pred -ccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc--------CcccccCC---CCceeEEEEEeccc
Confidence 11122222222333444444332 2 66777888999999764 23333211 00112334444442
Q ss_pred C-CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 403 K-DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 403 ~-~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
. ....+...++.+.|.++|+..-+-++... | .=.||.+- -.+.
T Consensus 808 ~~~~~g~~~~dIakrL~d~G~hapt~~~pv~--------------------------------g--~lmiepTE--~esk 851 (939)
T TIGR00461 808 LKAKTGIEAIDVAKRLQDYGFHAPTLSFPVP--------------------------------G--TLMVEPTE--SESL 851 (939)
T ss_pred hhhhcCCCHHHHHHHHHhCCeeccccCCccC--------------------------------C--eEEEEeec--cCCH
Confidence 1 11124456799999999998544211000 0 12355554 5799
Q ss_pred HHHHHHHHHHHHHH
Q psy16512 482 DDVKYFLSFLNQYF 495 (815)
Q Consensus 482 edi~~lv~~L~~~~ 495 (815)
+|+|+|+++|.++-
T Consensus 852 eelD~f~~al~~I~ 865 (939)
T TIGR00461 852 EELDRFCDAMIAIK 865 (939)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.8e-15 Score=164.92 Aligned_cols=302 Identities=12% Similarity=0.044 Sum_probs=173.4
Q ss_pred HHHHHHHHHhHcC-----CCCCc-eeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYFN-----TDSDH-YSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~g-----~~~~~-~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g-~v~~~ 177 (815)
..++|+.+++++. ..+++ .+|++|+|+++++.+++.++. ++|| |++..+.|+.+..... ..+... .+++.
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~ 124 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIF 124 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHhcCCEEEEeccc
Confidence 6677888877652 22221 148999999999999999998 8999 8888888877765432 222222 45552
Q ss_pred -chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccC-----CCCeEEEEeccc
Q psy16512 178 -VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-----RSNCFVLLDAAT 251 (815)
Q Consensus 178 -~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-----~~gi~vivD~a~ 251 (815)
+++.++++.++++++ ....+.+.++++++|+||||..++.+++.++++ .|+ ++++++|+|.++
T Consensus 125 ~~~~~~d~~~l~~~~~---~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~--------~~~~~~~~~~~~~iI~De~Y 193 (388)
T PRK08637 125 DEDGGFDTDALKEALQ---AAYNKGKVIVILNFPNNPTGYTPTEKEATAIVE--------AIKELADAGTKVVAVVDDAY 193 (388)
T ss_pred CCCCcCCHHHHHHHHH---hhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHHHhcCCcEEEEecccc
Confidence 344567777765432 111244678889999999999999887666554 221 289999999885
Q ss_pred cc----CCCCCCC-C---CCCCcE---EEEccccccccCCc--ceEEEEec------ccccccCcccccCceEEEEecCC
Q psy16512 252 YC----GSNMLDL-K---QHQPDF---ISISFYKMFGYPTG--LGALIVKQ------KSAHVLNKTFYGGGTVKISMANE 312 (815)
Q Consensus 252 ~~----g~~~~dl-~---~~~~D~---vv~S~~K~~g~p~G--~G~l~~~~------~~~~~l~~~~~g~~~~~~~~~~~ 312 (815)
.- +....++ . .....+ .+.|++|.|+ .+| +||+++.. ++.+.+.......
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~-~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~---------- 262 (388)
T PRK08637 194 FGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEF-VWGFRVGFITFGTKAGSSQTVKEALEKKVKGL---------- 262 (388)
T ss_pred hhcccCCccchhhHHHhhcccccceEEEeccccccCC-CcccceEEEEEccccCCcHHHHHHHHHHHHHH----------
Confidence 42 2111111 1 111122 2349999888 447 89999753 3433331110000
Q ss_pred cccccccCccccccCCCCChhHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 313 NFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 313 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
.+...+..|.+...++..+++.- ......+...++.++.+.+.|+... ..+++.++.+.+
T Consensus 263 ----------~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~---~~~~~~~~~~~~---- 325 (388)
T PRK08637 263 ----------IRSNISNGPHPSQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGK---YDDAWQAYPFNS---- 325 (388)
T ss_pred ----------hhcccCCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CCCCcccccccc----
Confidence 00111234445555555555311 1110011233333444455554430 002455554432
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
+.++++.+++. +..++.+.| +++||.+... + .
T Consensus 326 ---g~~~~~~l~~~-----~~~~l~~~l~~~~gv~~~~~------------~---------------------------~ 358 (388)
T PRK08637 326 ---GYFMCLKLKGV-----DAEELRVHLLEKYGIGTIAL------------N---------------------------E 358 (388)
T ss_pred ---eEEEEecCChH-----HHHHHHHHHhhhcceEEEec------------c---------------------------C
Confidence 55666666521 223455665 6789987521 0 2
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++|++++. .+.++++..++.|.+++.
T Consensus 359 ~~iRi~~~~-~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 359 TDLRIAFSC-VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred CceEEEeec-CCHHHHHHHHHHHHHHHH
Confidence 689999986 468999999999988764
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=158.57 Aligned_cols=300 Identities=17% Similarity=0.169 Sum_probs=182.4
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-----ceeEEecCCchhhHH
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-----HYSVIFTSGATSAIK 138 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-----~~~iv~t~g~t~al~ 138 (815)
|+.+...+..+..+..++.....+....+.........+ ..++-+++++++|.+.+ ...-++|+|+|+++.
T Consensus 42 ~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~----E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl 117 (373)
T PF00282_consen 42 FFGFVPGGPSPASILADLLASALNQNGFTWEASPAATEI----EREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANL 117 (373)
T ss_dssp BESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHHHHHH----HHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHH
T ss_pred HhhhccCCccHHHHHHHHHHhhhcccccccccccccccc----hHHHHHHHHHHhCCcccccccCCCceeEeccchHHHH
Confidence 444444455556666665554443322233322333344 67899999999999821 124799999999998
Q ss_pred HHHhhhcc---------C---CCc--EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 139 TVSEYFEF---------N---EGS--FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 139 ~~~~al~~---------~---~gd--vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
.++.+... . .++ ++++...|.|+.....+++-.. .+++++++.++.++++++|.+..+. ...+-
T Consensus 118 ~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~-g~~p~ 196 (373)
T PF00282_consen 118 YALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIAN-GKTPF 196 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHT-TEEEE
T ss_pred HHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccc-cccce
Confidence 88766542 1 123 6667778988866666554322 7788888888999988866422111 11245
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC------CCCCCCCCcEEEEccccccc
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM------LDLKQHQPDFISISFYKMFG 277 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~------~dl~~~~~D~vv~S~~K~~g 277 (815)
+|+.+..++.+|.+.|+++|.++|+ ++++|+|||++.+..... ....-..+|.++.++|||++
T Consensus 197 ~vvat~Gtt~~Ga~D~l~~i~~i~~-----------~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~ 265 (373)
T PF00282_consen 197 AVVATAGTTNTGAIDPLEEIADICE-----------KYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLG 265 (373)
T ss_dssp EEEEEBS-TTTSBB-SHHHHHHHHH-----------HCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS
T ss_pred eeeccCCCcccccccCHHHHhhhcc-----------ccceeeeecccccccccccccccccccccccccccccchhhhhc
Confidence 8889999999999999999999999 899999999998763321 11111258999999999999
Q ss_pred cCCcceEEEEecccc-cc-c--CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--
Q psy16512 278 YPTGLGALIVKQKSA-HV-L--NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-- 351 (815)
Q Consensus 278 ~p~G~G~l~~~~~~~-~~-l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-- 351 (815)
.|.++|+++++++.. .. + .+.|.+.... ..... . .....--.++. -...+.+...+..+...|-.
T Consensus 266 ~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~-----~~~~~--~-~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~ 336 (373)
T PF00282_consen 266 VPYGCGVLLVRDKSDLRDAFSINADYLGNDDR-----ESDES--Y-DYGDYTLQGSR-RFRALKLWATLKSLGREGYRER 336 (373)
T ss_dssp -SSS-EEEEESSGGGHHGGGEEEETCTT-S-S-----SS-GG--G-CEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccceeEEeecccchHHHhccChhhhccccc-----ccccc--c-ccccccccccc-cchHHHHHHHHHhcCHHHHHHH
Confidence 999999999998643 11 1 1112110000 00000 0 00000111222 23344444555555444322
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 352 FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 352 ~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
+++..++++++.+.|++. +.++++.+.. .++++|+++
T Consensus 337 i~~~~~~a~~l~~~l~~~------~~~el~~~~~-------~~~vcFr~k 373 (373)
T PF00282_consen 337 IRRCIELARYLADRLRKD------PRFELVNEPD-------LNIVCFRYK 373 (373)
T ss_dssp HHHHHHHHHHHHHHHHTS------TTEEESSTTS-------SSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHhC------CCEEEEcCCC-------ceEEEEEeC
Confidence 289999999999999998 7899997654 789999864
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=167.71 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=167.1
Q ss_pred hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 97 SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 97 ~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
+..... +.++++..|++||++.. .++++|+|.++.+++.++. ++|| |++.+.+|-|++....+.+... ++
T Consensus 201 ~~p~G~----I~eAq~~aA~~fgA~~t---~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl 272 (755)
T PRK15029 201 LDHTGA----FGESEKYAARVFGADRS---WSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILTGAKPVYM 272 (755)
T ss_pred CCCCcH----HHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEe
Confidence 444455 88999999999999753 7889999999999999998 9999 9999999999998877776666 44
Q ss_pred EcCc--hh---hhc-----chhhhhhhhhhhh---hcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC
Q psy16512 175 SFSV--DD---ARN-----MLNEFKESQENVE---NMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS 241 (815)
Q Consensus 175 ~~~~--~~---~~~-----~~~~~~~l~~~~~---~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~ 241 (815)
.... .+ .++ ++.++++|.+... ....++++++++++ |..|.+++++.|+++|+ ++
T Consensus 273 ~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h-----------~~ 340 (755)
T PRK15029 273 VPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLE-----------KT 340 (755)
T ss_pred cccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHH-----------hc
Confidence 3221 11 122 5555555532111 11234558888887 56799999999999999 89
Q ss_pred CeEEEEecccccCC-----CC--CCC-----CCCCCc-EEEEccccccccCCcceEEEEecc--ccc--ccCcccccCce
Q psy16512 242 NCFVLLDAATYCGS-----NM--LDL-----KQHQPD-FISISFYKMFGYPTGLGALIVKQK--SAH--VLNKTFYGGGT 304 (815)
Q Consensus 242 gi~vivD~a~~~g~-----~~--~dl-----~~~~~D-~vv~S~~K~~g~p~G~G~l~~~~~--~~~--~l~~~~~g~~~ 304 (815)
+++|+||+||++-. .| ..+ ...++| +++-|.||++++.+..++|.++.. .++ +++..+
T Consensus 341 ~~~llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l----- 415 (755)
T PRK15029 341 SDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY----- 415 (755)
T ss_pred CCeEEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHH-----
Confidence 99999999987521 11 111 125788 888899999998887888888654 221 121111
Q ss_pred EEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhc
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l 369 (815)
.-+.+.+|+++.++++..|..++.. .|... ++..+++..+++.+.++
T Consensus 416 ------------------~~~qSTSPSY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 416 ------------------MMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred ------------------HHHcCCCcHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 2355678999999999999998885 55555 77888888888888776
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-14 Score=157.33 Aligned_cols=332 Identities=16% Similarity=0.149 Sum_probs=203.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +.-++.+.+++.+.+......++. . .... .+++++.++++++.+ . ++|++++
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~--~-~~~~----~~~~~~~l~~~~~~~--~--~~~~~SG 97 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRA--F-YNDV----LGLAEKYITDLFGYD--K--VLPMNSG 97 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccccc--c-cCHH----HHHHHHHHHhCCCCC--E--EEEeCCc
Confidence 34456665431 224688888888776542222211 1 1223 788999999988753 2 8899999
Q ss_pred hhhHHHHHhhhcc---------CCCc-EEEecCC-CcchhhHHHHhhccc----eEEcCch----hhhcchhhhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF---------NEGS-FIYLTDN-HTSVLGMRELVKTNQ----IYSFSVD----DARNMLNEFKESQEN 194 (815)
Q Consensus 134 t~al~~~~~al~~---------~~gd-vv~~~~~-h~s~~~~~~~~~~~g----~v~~~~~----~~~~~~~~~~~l~~~ 194 (815)
++|+..++..+.. ..++ +|..... |.............. +.+...+ ...+++.++++++
T Consensus 98 s~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-- 175 (400)
T PTZ00125 98 AEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ-- 175 (400)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhC--
Confidence 9999999886631 1223 6666544 544443333221110 0011000 0114445544331
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~ 265 (815)
.+++++|+++.++|++|.+.| +++|.++|+ +||+++|+|+++. +|.. ..+.....+
T Consensus 176 ----~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~lli~Dev~~g~g~~G~~~~~~~~~~~p 240 (400)
T PTZ00125 176 ----DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCK-----------KYNVLLIVDEIQTGLGRTGKLLAHDHEGVKP 240 (400)
T ss_pred ----CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCccchhhHHHhcCCCC
Confidence 256899999999999999998 888999998 8999999999975 3311 122233457
Q ss_pred cEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 266 D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
|++++ +|.++++. .+|++++++++.+.+.....+ . ....+.....++.++++.
T Consensus 241 d~~~~--sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~-----------------------~-t~~~~~~~~~aa~~~l~~ 294 (400)
T PTZ00125 241 DIVLL--GKALSGGLYPISAVLANDDVMLVIKPGEHG-----------------------S-TYGGNPLACAVAVEALEV 294 (400)
T ss_pred CEEEE--cccccCCCcCcEEEEEcHHHHhhccCCCCC-----------------------C-CCCcCHHHHHHHHHHHHH
Confidence 87764 59888432 489999999887655321100 0 012344566666677777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+... ...++..++.+++.+.|.++.. ..+.+.... ..+.++.+.++..+. .....+.+.|.++||.+
T Consensus 295 i~~~-~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~--------~~g~~~~v~~~~~~~--~~~~~~~~~l~~~Gv~v 361 (400)
T PTZ00125 295 LKEE-KLAENAQRLGEVFRDGLKELLK--KSPWVKEIR--------GKGLLNAIVFDHSDG--VNAWDLCLKLKENGLLA 361 (400)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEe--------cccEEEEEEEccCcc--hHHHHHHHHHHHCCeEE
Confidence 6543 1236777788888888876410 012222221 136677776653221 12335677777889998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++. .++||+++++..+++++++++++|.+++..
T Consensus 362 ~~~~---------------------------------------~~~lRi~~~~~~~~~~i~~~l~~l~~~l~~ 395 (400)
T PTZ00125 362 KPTH---------------------------------------DNIIRFAPPLVITKEQLDQALEIIKKVLKS 395 (400)
T ss_pred eecC---------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 6431 268999999889999999999999987643
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-14 Score=157.87 Aligned_cols=313 Identities=13% Similarity=0.087 Sum_probs=188.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCch-hhHHHHHhhhcc-C-CCc-EEEecCCCcchhhHHHHhhccc-eEEc--Cc-
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGAT-SAIKTVSEYFEF-N-EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SV- 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t-~al~~~~~al~~-~-~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~- 178 (815)
.+++...+++++|++.-. ..++++|+| .++.+++.++.. . +|+ ||++...|.++.....+++... +++. ++
T Consensus 107 ~~~~e~~~~~~~G~~~~~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~~d~~ 185 (444)
T TIGR03531 107 TNKLVKDFLKLLGLRSIK-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETVLDGD 185 (444)
T ss_pred HHHHHHHHHHHcCCCCCC-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeeeecCc
Confidence 778999999999997322 278888888 688888888762 1 577 9999999999987777766555 5553 22
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEeccc-CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAES-NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM 257 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~-n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~ 257 (815)
+..++++.++++|+ ...+++.++++.+++ +.+|...|+++|+++|+ ++|+++|+|+|++.+...
T Consensus 186 ~~~iD~e~Le~aIt----~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~-----------k~gI~lIvDaAyg~~~~~ 250 (444)
T TIGR03531 186 ELTTDVEDIERAIE----EIGPDNILCVLSTTSCFAPRSPDDIEEIAKICA-----------NYDIPHIVNNAYGLQSNK 250 (444)
T ss_pred CCCcCHHHHHHHHH----hccCCCEEEEEEcCCcCCCcchhCHHHHHHHHH-----------HcCCEEEEECcCcCcChh
Confidence 34678888887664 111245555555443 45568899999999999 899999999999875432
Q ss_pred C-CC----CCC-CCcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 258 L-DL----KQH-QPDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 258 ~-dl----~~~-~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
. .+ ... .+|++++|+||++..|.+.|++++++ ++++.+...+.+. ..
T Consensus 251 ~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~--------------------------~~ 304 (444)
T TIGR03531 251 YMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGR--------------------------AS 304 (444)
T ss_pred hhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCC--------------------------CC
Confidence 1 11 112 36999999999999776656666744 4444443322110 01
Q ss_pred ChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
+...+.++..++.+-.+....+ ++..++++++.+.|+++.-. -+-+++.... ..--+++.+....+. +
T Consensus 305 ~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~---~~~~~~~~~~------n~is~~~~~~~~~~~--~ 373 (444)
T TIGR03531 305 ASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAER---HGERLLDTPE------NPISSAMTLSTLKGK--D 373 (444)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCcEeecCCC------CceeEEEeccccccc--C
Confidence 1122222222222211111222 77888888888888776211 1345553321 011122222221111 2
Q ss_pred HHHHHHhhhcCCcE----eccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc----ccCCCCceEEEEeccCCCCH
Q psy16512 410 YSEVQNLANLKKIQ----LRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD----IIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 410 ~~~v~~~l~~~gI~----v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~----~~~~~~~g~iRvs~g~~~t~ 481 (815)
...+-.+|-.++|. |.+|. . .++||-.+. -.+.++..|+-++...-.+.
T Consensus 374 ~~~~g~~l~~~~v~g~r~v~~~~------~-----------------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~ 430 (444)
T TIGR03531 374 PTMLGSMLYSRRVTGPRVVTNGD------S-----------------KTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTK 430 (444)
T ss_pred HHHHHHHHHhCCCCCceeecCCC------c-----------------eEECCEEeecccccccCCCchhHHHHHHhCCcH
Confidence 33466777777763 12221 0 111221111 12345567888888878899
Q ss_pred HHHHHHHHHHHHHH
Q psy16512 482 DDVKYFLSFLNQYF 495 (815)
Q Consensus 482 edi~~lv~~L~~~~ 495 (815)
+|||.|++.|++++
T Consensus 431 ~~~~~~~~~l~~~~ 444 (444)
T TIGR03531 431 EDVDTFVSRLEKSL 444 (444)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999998753
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-14 Score=147.58 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=219.6
Q ss_pred cccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC
Q psy16512 71 GVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE 148 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~ 148 (815)
...++.+.+++...+.+. ..+.|+.. +.--+..-...+-+.++..++||++..+ +-..+++.|+..+..++. +|
T Consensus 36 N~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~an---VQPhSGs~AN~av~~All-~p 111 (413)
T COG0112 36 NFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYAN---VQPHSGSQANQAVYLALL-QP 111 (413)
T ss_pred ccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccc---cCCCCchHHHHHHHHHHc-CC
Confidence 356677888776666542 34556655 2222221111335778888999998765 444566779999999999 99
Q ss_pred Cc-EEEecCCCcchhh---HHHHhhc-cc--eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 149 GS-FIYLTDNHTSVLG---MRELVKT-NQ--IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 149 gd-vv~~~~~h~s~~~---~~~~~~~-~g--~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
|| ++-.+..|...+. -..+.+. .. .++++.+ ..+|.+.+++.+. ..++++|+.-. +..-..+|.
T Consensus 112 GDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~------e~kPK~ii~G~--SaY~r~id~ 183 (413)
T COG0112 112 GDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAK------EVKPKLIIAGG--SAYSRPIDF 183 (413)
T ss_pred CCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHH------HhCCCEEEECc--cccccccCH
Confidence 99 5555544332111 1111111 11 4567744 6889888886443 35688888743 344578899
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEec-ccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ-KSAHV 294 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~ 294 (815)
+++.++|+ +.|+++++|.||.+|. -|-++. .+|+++.|.||+|.+|.| |+++.++ ++.++
T Consensus 184 ~~~reIad-----------~VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kk 249 (413)
T COG0112 184 KRFREIAD-----------EVGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKK 249 (413)
T ss_pred HHHHHHHH-----------HhCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHH
Confidence 99999999 8999999999998764 222332 389999999999988986 7777775 66667
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
+....|-|.+ |.|..+.++|...++....+.+ ..+ +++.++++.|.+.|.+.
T Consensus 250 in~aVFPg~q-----------------------ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~--- 303 (413)
T COG0112 250 INSAVFPGLQ-----------------------GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKER--- 303 (413)
T ss_pred hhhhcCCccC-----------------------CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc---
Confidence 7654443322 3456677777777776655444 444 88999999999999987
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
|+++++... ..+++.+.+... .++-..+.+.|.+.||.+.--.....+
T Consensus 304 ----G~~vvsGgT------dnHl~lVDl~~~---~~~Gk~ae~~L~~~~It~NKN~iP~D~------------------- 351 (413)
T COG0112 304 ----GFKVVSGGT------DNHLVLVDLRSK---GLTGKKAEAALERAGITVNKNAIPFDP------------------- 351 (413)
T ss_pred ----CCeEecCCc------cceEEEEEcccC---CCCHHHHHHHHHHcCEeeccCCCCCCC-------------------
Confidence 889886432 256777776621 123345889999999988543221110
Q ss_pred CCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHhhcC
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~~~~ 499 (815)
..-..+..||+.....+ .++|++.+.+.|.+++.+..
T Consensus 352 ----------~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 352 ----------ESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred ----------CCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 00112456888754333 56899999999999887654
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=143.67 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=211.4
Q ss_pred hhcccccchhhHHHHHHHHhhcccc-------CCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC-CchhhHH
Q psy16512 67 YTGAGVYSQSQMNQTIEQLKENIFS-------HPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS-GATSAIK 138 (815)
Q Consensus 67 ~a~~~~~p~~v~~al~~~l~~~~~~-------np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~-g~t~al~ 138 (815)
.++...+|++|++...+.+.+. .+ -.|+....... +.++++.+.++++. |++|.|.|.+ |+|..+.
T Consensus 10 saGPa~lp~~vL~~a~~e~~~~-~g~g~svme~SHRsk~~~~v----~~~a~~~lreLl~i-Pd~Y~VlflqGGat~qf~ 83 (365)
T COG1932 10 SAGPAALPPEVLQQAQKELLDW-NGLGMSVMEISHRSKEFKNV----LEEAEKDLRELLNI-PDDYKVLFLQGGATGQFA 83 (365)
T ss_pred CCCcccCCHHHHHHHHHHHhhh-ccCCcceeeeccccHHHHHH----HHHHHHHHHHHhCC-CCCceEEEEcCccHHHHH
Confidence 4456667888888887766542 22 34555555566 89999999999999 4568888875 5788889
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccce-EEcC-----chhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQI-YSFS-----VDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~-v~~~-----~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++..++.-..+. .+.+ ..+.+. ..+.+...+. ..+. ..+.-.+....+. ...++...|.+++.+
T Consensus 84 ~~p~nLl~~~~~~yv~~-g~Ws~~--a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~------~~~~~~ayv~~~~Ne 154 (365)
T COG1932 84 MAPMNLLGKRGTDYVDT-GAWSEF--AIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKW------DFSDNDAYVHFCWNE 154 (365)
T ss_pred HHHHhhhcccCceeEee-eehhHh--HHHHHHHhcccccccccceeccCccCCCChhhc------ccCCCccEEEEecCC
Confidence 999988733332 1221 111111 1111222220 1000 0111111111110 112335569999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
+.+|+.+|... .+ ..+.++++|+++.+...++|+++ .|++.++.+|.+| |.|++++++++++
T Consensus 155 Ti~Gv~v~~~p--~~-------------~~~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnlG-paGltvvIvr~~~ 216 (365)
T COG1932 155 TISGVEVPELP--DI-------------GSDGLLVADASSAILSRPIDVSK--YDVIYAGAQKNLG-PAGLTVVIVRPDL 216 (365)
T ss_pred cccceEccCCC--CC-------------CCCceEEEecccHHhcCCCChhH--cceEEEehhhccC-ccceEEEEEcHHH
Confidence 99999987211 11 22378999999999999999875 5899999999999 9999999999999
Q ss_pred ccccCcc-cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--H-HHHHHHHHHHHHHHH
Q psy16512 292 AHVLNKT-FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--F-TNAFELSQYTYFYFK 367 (815)
Q Consensus 292 ~~~l~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~-~~~~~l~~~l~~~L~ 367 (815)
+++++.. ...- +.+. ......-...||+..+++.+...++++...|.- + ++.++.++.|++.+.
T Consensus 217 l~r~~~~~~P~i------f~y~------~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id 284 (365)
T COG1932 217 LERAESYTLPSI------FDYL------THADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWID 284 (365)
T ss_pred HhcccccCCchH------hhch------hhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8877543 1000 0000 000112234578888888888899999887653 2 899999999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
+. +-..-.-.. ..++-..++|.+.+.+ ++. .+.+.+.++|...-.|.
T Consensus 285 ~s------~fy~~~v~~----~~RS~mnV~f~~~~~~---ld~-~fv~eae~~gl~~lkGh------------------- 331 (365)
T COG1932 285 KS------DFYRNLVAK----ANRSRMNVTFTLVDAE---LDK-GFVAEAEAAGLIYLKGH------------------- 331 (365)
T ss_pred hC------Cccccccch----hhccceeEEEEcCcHH---HHH-HHHHHHHHcCCceeccc-------------------
Confidence 76 222111111 1344556677766432 222 36667777777765551
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+..|.+|+|+......|+++.|+++|+.+..
T Consensus 332 ------------------r~vgGmRasiynA~~~e~veaL~~fm~~f~~ 362 (365)
T COG1932 332 ------------------RSVGGLRASIYNAVPLEDVEALTDFMDWFEE 362 (365)
T ss_pred ------------------cCCCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 1135599999988899999999999998754
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-13 Score=150.38 Aligned_cols=323 Identities=12% Similarity=0.093 Sum_probs=193.8
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+.+.+++.+++....... ... ..+. ..++.++++++.+. +. ++|++|++
T Consensus 30 G~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~--~~~-~~~~----~~~la~~l~~~~~~--~~--v~~~~sGs 98 (389)
T PRK01278 30 GERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVS--NLY-RIPE----QERLAERLVENSFA--DK--VFFTNSGA 98 (389)
T ss_pred CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccc--ccc-CChH----HHHHHHHHHhhCCC--CE--EEEcCCcH
Confidence 445666443 23445788888877765321111 111 1122 55677888887753 33 99999999
Q ss_pred hhHHHHHhhhc---cCCC-----cEEEecCCCcchhhHHHHhhccc-e----EEcCchh----hhcchhhhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFE---FNEG-----SFIYLTDNHTSVLGMRELVKTNQ-I----YSFSVDD----ARNMLNEFKESQENVEN 197 (815)
Q Consensus 135 ~al~~~~~al~---~~~g-----dvv~~~~~h~s~~~~~~~~~~~g-~----v~~~~~~----~~~~~~~~~~l~~~~~~ 197 (815)
+|+..++..+. ..+| ++|+....|+........+.... . .+...+. ..+++.+++ .
T Consensus 99 eA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~ 171 (389)
T PRK01278 99 EAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKA-------A 171 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHH-------h
Confidence 99999987762 1233 37777766655433322221111 1 1111110 023344443 3
Q ss_pred cCCCccEEEEecccCCCcc-ccC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEE
Q psy16512 198 MRHSNSLFVYPAESNFSGT-KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFI 268 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~-~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~v 268 (815)
+++++++|+++.++|++|. .+| +++|.++|+ +||+++|+|+++. ++.. ........+|+
T Consensus 172 l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi- 239 (389)
T PRK01278 172 ITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCD-----------ENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDI- 239 (389)
T ss_pred hCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCCcceeecccCCCCCE-
Confidence 3457999999999999994 445 555666677 9999999999876 2211 11112234675
Q ss_pred EEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH
Q psy16512 269 SISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346 (815)
Q Consensus 269 v~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~ 346 (815)
.+++|.++ + | +|+++.+++.++.+.... .....+.|.....++.++++.+.
T Consensus 240 -~t~sK~l~-~-G~~ig~~~~~~~~~~~~~~~~------------------------~~~t~~~~~~~~aaa~a~l~~l~ 292 (389)
T PRK01278 240 -MAVAKGIG-G-GFPLGACLATEEAAKGMTPGT------------------------HGSTYGGNPLAMAVGNAVLDVIL 292 (389)
T ss_pred -EEEehhcc-C-CcceEEEEEcHHHHhccCCCC------------------------CCCCCCccHHHHHHHHHHHHHHh
Confidence 57889888 3 5 899999887765543211 01111355667777777788765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ...++.+++.+++.+.|+.+.. ..+. +..+ ...+.++.+.+.. + ..++.+.|.++||.+.
T Consensus 293 ~~-~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~v--------~g~G~~~~i~~~~-~-----~~~~~~~l~~~GV~~~ 355 (389)
T PRK01278 293 AP-GFLDNVQRMGLYLKQKLEGLVD--RFPDVIEEV--------RGKGLLLGLKCVV-P-----NRDLVQALRDEGLLTV 355 (389)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHh--hCCCceeeE--------ecccEEEEEEEec-C-----HHHHHHHHHHCCeEEe
Confidence 32 1226777778888887776510 0121 1111 1225566665532 1 2347777777799986
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++. .+++|+++.+..++++++++++.|++++.
T Consensus 356 p~~---------------------------------------~~~lR~~p~~~~~~~~i~~~l~~l~~~l~ 387 (389)
T PRK01278 356 GAG---------------------------------------DNVVRLLPPLIITEEEIDEALERLERAAE 387 (389)
T ss_pred ecC---------------------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 541 26899999888899999999999998764
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-14 Score=157.18 Aligned_cols=294 Identities=11% Similarity=0.039 Sum_probs=168.0
Q ss_pred HHHHHHHHHhHcCCCCC----ceeE--EecCCchhh--HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYFNTDSD----HYSV--IFTSGATSA--IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~----~~~i--v~t~g~t~a--l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++..... +..| .-+.+++++ +...+..+. .+|| |++..+.|+.+....+.++... .++.
T Consensus 93 ~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l 171 (423)
T PLN02397 93 LAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARF-YPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRY 171 (423)
T ss_pred CHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHcCCeEEEeec
Confidence 77899999997632210 0013 113333334 333344444 6899 9999988888766666554443 4444
Q ss_pred -Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 177 -SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 177 -~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
+. +..++++.+++.+. .. .++++++++++++||||.+++.+++.++++ .|+++|+++|+|.++.--
T Consensus 172 ~~~~~~~~d~~~l~~~l~---~~-~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~--------~a~~~~~~vI~De~Y~~l 239 (423)
T PLN02397 172 YDPKTRGLDFDGLLEDLK---AA-PDGSFVLLHACAHNPTGVDPTPEQWEQISD--------LIKSKNHLPFFDSAYQGF 239 (423)
T ss_pred ccCcCCccCHHHHHHHHH---hC-CCCCEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHhCCcEEEEecccCCc
Confidence 22 23456665554332 11 356899999999999999999888766655 344899999999885421
Q ss_pred CC--------CC-CCCCCC-CcEEEEccccccccCCc--ceEEE--E-ecccccccCcccccCceEEEEecCCccccccc
Q psy16512 255 SN--------ML-DLKQHQ-PDFISISFYKMFGYPTG--LGALI--V-KQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 255 ~~--------~~-dl~~~~-~D~vv~S~~K~~g~p~G--~G~l~--~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
.. ++ .+...+ .-+++.||+|.|+ ++| +||++ . +++.++.+......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~-~~G~RvG~~v~~~~~~~~~~~~~~~~~~------------------ 300 (423)
T PLN02397 240 ASGDLDADAQSVRMFVEDGHEILVAQSYAKNMG-LYGERVGALSVVCKSADVAVRVKSQLKL------------------ 300 (423)
T ss_pred cCCchhhhhHHHHHHHhcCCcEEEEEECcccCC-CccccceEEEEEeCCHHHHHHHHHHHHH------------------
Confidence 10 00 111111 2367789999999 778 79986 3 23332222100000
Q ss_pred CccccccCCCCChhHHHHHHHHHHHH---Hhh---hhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcc
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTM---EKK---RKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQ 392 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l---~~~---~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~ 392 (815)
..+....+.+.....++..+++.- ... -..+ ++.++.++.+.+.|+++... .++..+.|++
T Consensus 301 --~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~---~~~~~~~p~g------- 368 (423)
T PLN02397 301 --IARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSP---GDWSHITKQI------- 368 (423)
T ss_pred --HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCcccCCc-------
Confidence 000111123434444444444321 011 1122 67888888899999876100 0244444432
Q ss_pred cceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 393 GNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 393 ~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
+.+++..+. .....+++.++||.+.. .+ |
T Consensus 369 g~fl~~~l~--------~~~~~~Ll~~~~V~v~~-----------------------------------------~~--R 397 (423)
T PLN02397 369 GMFSFTGLN--------KEQVDRMTKEYHIYMTR-----------------------------------------DG--R 397 (423)
T ss_pred eEEEecCCC--------HHHHHHHHHhCCEEECC-----------------------------------------CC--e
Confidence 344444332 12355666889999842 14 9
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++.. .+.+++++++++|++++.
T Consensus 398 i~~~~-~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 398 ISMAG-LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred EEEee-CCHHHHHHHHHHHHHHHh
Confidence 99853 478999999999999863
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-14 Score=153.04 Aligned_cols=294 Identities=12% Similarity=0.075 Sum_probs=171.1
Q ss_pred cccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhccC
Q psy16512 71 GVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~~~ 147 (815)
...++.+.+++...+... ..+.|... +.-.+...+..+-+.++++++||++++.|.+ +=..+++.|+..++.++. +
T Consensus 30 N~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl-~ 108 (399)
T PF00464_consen 30 NYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL-K 108 (399)
T ss_dssp ----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT--
T ss_pred cccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH-h
Confidence 345566666665544432 22344433 2222221111334778899999999776544 445778889999999999 9
Q ss_pred CCc-EEEecCC---CcchhhHHHH-----hhc-cc--eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 148 EGS-FIYLTDN---HTSVLGMREL-----VKT-NQ--IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 148 ~gd-vv~~~~~---h~s~~~~~~~-----~~~-~g--~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
||| |+..... |-+.-..... ... .. .++++ .++.+|.+++++.+. ..++++|++..-+ .
T Consensus 109 pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~------~~kPklIi~G~S~--y 180 (399)
T PF00464_consen 109 PGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAK------EHKPKLIICGASS--Y 180 (399)
T ss_dssp TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHH------HH--SEEEEE-SS--T
T ss_pred hcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHh------hcCCCEEEECchh--c
Confidence 999 5555443 3332111111 111 11 45677 446788888876543 2468999997644 3
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEe-
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVK- 288 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~- 288 (815)
-..+|.+++.++|+ +.|+++++|.+|.+|. .+-++. .+|++++|.||.|.||.| |+++.+
T Consensus 181 ~~~~d~~~~reIad-----------~vga~l~~D~sH~~GLIa~g~~~~P~~--~ADvvt~sThKtl~GPrg-giI~~~~ 246 (399)
T PF00464_consen 181 PRPIDFKRFREIAD-----------EVGAYLMADISHIAGLIAGGLFPNPFP--YADVVTGSTHKTLRGPRG-GIILTNK 246 (399)
T ss_dssp SS---HHHHHHHHH-----------HTT-EEEEE-TTTHHHHHTTSS--GCC--TSSEEEEESSGGG-SSS--EEEEES-
T ss_pred cCccCHHHHHHHHH-----------hcCcEEEecccccccceehheecCccc--cceEEEeeccccccccCc-eEEEEcC
Confidence 46788999999999 8899999999998653 333343 389999999999998986 888888
Q ss_pred -------------cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-H
Q psy16512 289 -------------QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-T 353 (815)
Q Consensus 289 -------------~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~ 353 (815)
+++.+++....+-+ ..|.+....++|+..++..... .+..+ +
T Consensus 247 ~~~~~~~~~~~~~~~l~~~I~~avfP~-----------------------~qg~~h~~~iaalAval~ea~~~~fk~Ya~ 303 (399)
T PF00464_consen 247 GSKNVDKKGKEIDEELAEKIDSAVFPG-----------------------LQGGPHMHRIAALAVALKEALSPEFKEYAK 303 (399)
T ss_dssp SEEEE-TTS-EEEHHHHHHHHHHHTTT-----------------------T-SS--HHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred CccccCCcccccHHHHHHHhccccCCC-----------------------cccCcchhHHHHHHHHHhcccCHHHHHHHH
Confidence 23333332222111 1245667788888888776543 23455 8
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 354 NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 354 ~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
++.++++.|.+.|.+. |++++... ...+++.+.+... .++..++.+.|.+.||.+..
T Consensus 304 qVv~NAk~La~~L~~~-------G~~v~~gg------Td~H~vlvd~~~~---~~~g~~a~~~Le~~gI~vnk 360 (399)
T PF00464_consen 304 QVVKNAKALAEALQER-------GFKVVTGG------TDNHQVLVDLRSF---GIDGKEAEKALEEAGIIVNK 360 (399)
T ss_dssp HHHHHHHHHHHHHHHT-------T-EEGGGS-------SSSEEEEEGGGG---TS-HHHHHHHHHHTTEE-EE
T ss_pred HHHHHHHHHHHHHhhC-------CcEEEECC------CCCCeEEEEeccc---ccchHHHHHHHHhcCeeecc
Confidence 9999999999999997 89998632 2367888877532 13344688999999999864
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.7e-13 Score=150.24 Aligned_cols=310 Identities=14% Similarity=0.120 Sum_probs=187.0
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CC---
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NE--- 148 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~--- 148 (815)
.+.+.+++.+.+...... ...+ .... ..++.++++++.+. ++ +++++|+++|+.+++..+.. .+
T Consensus 57 ~p~v~~a~~~~~~~~~~~--~~~~-~~~~----~~~la~~l~~~~~~--~~--v~~~~gg~eA~~~al~~a~~~~~~~~~ 125 (396)
T PRK02627 57 HPKLVEAIQEQAAKLIHT--SNLY-YIEP----QEELAEKLVELSGM--DK--VFFCNSGAEANEAAIKLARKYGHKKGI 125 (396)
T ss_pred CHHHHHHHHHHHhhcccc--cccc-CCHH----HHHHHHHHHhhcCC--CE--EEECCCcHHHHHHHHHHHHHHhcccCC
Confidence 367777777766532111 1111 1222 66788888888765 34 99999999999999986541 11
Q ss_pred -Cc-EEEecCCCcchh-hHHHHhhcc----ceEEcCchh----hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc-
Q psy16512 149 -GS-FIYLTDNHTSVL-GMRELVKTN----QIYSFSVDD----ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT- 216 (815)
Q Consensus 149 -gd-vv~~~~~h~s~~-~~~~~~~~~----g~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~- 216 (815)
.+ ++.....|.... ......... +..++..+. ..+++.+++ .+.+++++|+++.++|++|.
T Consensus 126 ~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~i~~~~~~vii~p~~~~~G~~ 198 (396)
T PRK02627 126 EKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKA-------AITDKTAAVMLEPIQGEGGVN 198 (396)
T ss_pred CCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHH-------hcCCCeEEEEEecccCCCCCc
Confidence 14 666665543322 211111100 011111110 013444443 33467999999999999994
Q ss_pred ccC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEEEccccccccCCc--ceEEE
Q psy16512 217 KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFISISFYKMFGYPTG--LGALI 286 (815)
Q Consensus 217 ~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~ 286 (815)
.+| +++|.++|+ ++|+++|+|+++. ++.. ..+.....+|++ +++|.++ + | +|+++
T Consensus 199 ~~~~~~l~~l~~l~~-----------~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~~~-~-G~rig~~~ 263 (396)
T PRK02627 199 PADKEYLQALRELCD-----------ENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIM--TLAKGLG-G-GVPIGAVL 263 (396)
T ss_pred cCCHHHHHHHHHHHH-----------HcCCEEEEechhcCCCccCceeeehhcCCCCCEE--EEcchhh-C-CcccEEEE
Confidence 555 556677777 8999999999876 3221 111222346754 6889998 4 5 89999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYF 366 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L 366 (815)
+++++++.+.... .....+.+.....++.++++.+... ...++.+++.+++.+.|
T Consensus 264 ~~~~~~~~~~~~~------------------------~~~t~~~~~~~~~aa~~~l~~~~~~-~~~~~~~~~~~~~~~~l 318 (396)
T PRK02627 264 AKEKVADVFTPGD------------------------HGSTFGGNPLACAAALAVIEIIEEE-GLLENAAEVGEYLRAKL 318 (396)
T ss_pred EcHHHHhccCCCC------------------------CCCCCCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 9888765543211 0111234666777777777766542 22377777778787777
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
.++.. ..|.+..+ ...+.++.+.+. .+ ..++.+.|.++||.+.++.
T Consensus 319 ~~~~~--~~~~~~~~--------~~~g~~~~i~~~-~~-----~~~~~~~l~~~Gv~v~~~~------------------ 364 (396)
T PRK02627 319 RELLE--KYPGIKEV--------RGLGLMIGIELD-RP-----AAEIVKKALEKGLLINVTG------------------ 364 (396)
T ss_pred HHHHH--hCCCeeee--------ccCcEEEEEEec-Cc-----HHHHHHHHHHCCeEEeecC------------------
Confidence 66510 00222211 123667777762 11 2347777777899987531
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+++++..+++++++++++|++++.
T Consensus 365 ---------------------~~~lRi~~~~~~~~~~i~~~~~~l~~~l~ 393 (396)
T PRK02627 365 ---------------------DNVLRLLPPLIISKEEIDEAVDRLEEVLK 393 (396)
T ss_pred ---------------------CCEEEEECCcccCHHHHHHHHHHHHHHHH
Confidence 26799999888899999999999998764
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=143.76 Aligned_cols=301 Identities=18% Similarity=0.164 Sum_probs=189.0
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~ 175 (815)
....|+++|+++. .+|+. +++++|+|.|+++++..+. .||| ++++.+.||.+..-. .-+.| .+|
T Consensus 123 l~~frqa~A~Fm~~~r~~~v~fdP~~--~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrdl--~~rTgveivp 197 (471)
T KOG0256|consen 123 LPSFRQAVAEFMERARGNRVKFDPER--VVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRDL--RWRTGVEIVP 197 (471)
T ss_pred chHHHHHHHHHHHHHhCCCCccCccc--eEEecccchhhHHHHHHhc-CCCceeeecCCCCCcccccc--eeccCceEEE
Confidence 5567888888763 45666 9999999999999999999 9999 889888888764322 22334 444
Q ss_pred c--Cc--hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 176 F--SV--DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 176 ~--~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+ +. ...++.++++.++.. +.+...+.+-+++++|+||.|..++.+++..++. +++++++.||+|+.+
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~-A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~--------Fa~~kniHvI~DEIy 268 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQ-ARKLGLKVKGVLITNPSNPLGTTLSPEELISLLN--------FASRKNIHVISDEIY 268 (471)
T ss_pred EEeecCCCccccHHHHHHHHHH-HHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHH--------HHhhcceEEEeehhh
Confidence 3 33 235677777776642 1123446889999999999999999999988887 667999999999876
Q ss_pred ccCCCC----CC---C---CCCCCc--EEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccc
Q psy16512 252 YCGSNM----LD---L---KQHQPD--FISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 252 ~~g~~~----~d---l---~~~~~D--~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+..... .+ + ....+| -++.|.+|=|| .+| +|++|..++-+ ...++..
T Consensus 269 a~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~G-lpGfRvGviYS~ne~VvsaA~kms----------------- 330 (471)
T KOG0256|consen 269 AGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFG-LPGFRVGVIYSNNEDVVSAATKMS----------------- 330 (471)
T ss_pred cccccCccCceEHHHHhhccccCCCcEEEEEEeccccC-CCceEEEEEEecChHHHHHHHHHh-----------------
Confidence 543210 00 0 011233 57889999999 458 79999876543 2222111
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHH---HHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcc
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDT---MEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQ 392 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~---l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~ 392 (815)
+| |..+.....-+..-|.. .+..-.+. +|++...+++.+.|+++ ++..+....
T Consensus 331 -------sf--~~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-------gI~cl~s~A------- 387 (471)
T KOG0256|consen 331 -------SF--GLVSSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-------GIPCLKSNA------- 387 (471)
T ss_pred -------hc--cCCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-------CCceeecCC-------
Confidence 00 11122222222222222 11111112 77777778888999998 677665432
Q ss_pred cceEEEEEecC--CCCccC-HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 393 GNIVNFNLLHK--DGTYYG-YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 393 ~~i~~f~~~~~--~~~~~~-~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
|-++++.+... +..... ...+.+.+.+-++.+++|+.|.- ..+|
T Consensus 388 GlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C---------------------------------~EpG 434 (471)
T KOG0256|consen 388 GLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHC---------------------------------HEPG 434 (471)
T ss_pred eeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCccee---------------------------------cCCC
Confidence 55666665431 111111 12244555666999999976531 1159
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++|++|.- ..++.++-.++.|+.++.
T Consensus 435 WFRvcFAn-~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 435 WFRVCFAN-MSEETLEVAMRRLKQFLD 460 (471)
T ss_pred eEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 99999973 355666667788877544
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.6e-13 Score=151.80 Aligned_cols=392 Identities=11% Similarity=0.062 Sum_probs=222.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.|+.+....+.+++++..+...+.+...........+..+ .+++-+++++++|.++.. -+||+|+|.|+..++.
T Consensus 85 ry~ghm~~~~~~paila~~~a~~~N~n~~~~e~SP~~t~l----E~~vi~~la~l~G~~~~~--G~~TsGGT~ANl~aL~ 158 (608)
T TIGR03811 85 RYWGHMNSETLMPAILAYNYAMLWNGNNVAYESSPATSQM----EEEVGKEFATLMGYKNGW--GHIVADGSLANLEGLW 158 (608)
T ss_pred ceEEECcCCCCHHHHHHHHHHHHhCCCCCccccCchHHHH----HHHHHHHHHHHhCCCCCC--eEEeCChHHHHHHHHH
Confidence 4555555555666666665444332211111111333333 678999999999987654 7899999999876554
Q ss_pred hhccC---------------------------------------------------C-------CcEEEecCCCcchhhH
Q psy16512 143 YFEFN---------------------------------------------------E-------GSFIYLTDNHTSVLGM 164 (815)
Q Consensus 143 al~~~---------------------------------------------------~-------gdvv~~~~~h~s~~~~ 164 (815)
+.... + +.++++...|.|+...
T Consensus 159 ~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KA 238 (608)
T TIGR03811 159 YARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKA 238 (608)
T ss_pred HHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHH
Confidence 43210 0 0255555669888776
Q ss_pred HHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC
Q psy16512 165 RELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR 240 (815)
Q Consensus 165 ~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~ 240 (815)
..+++-.. .+|++.++.++++.++++|.+..+ ....+-+|+.+..++.+|.+.|+++|+++|++ +++
T Consensus 239 a~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~-~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~--------~~~ 309 (608)
T TIGR03811 239 ADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAA-EKTPILGVVGVVGSTEEGAVDGIDKIVALRNK--------LMK 309 (608)
T ss_pred HHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHh-cCCCeEEEEEEcCCcCCcccCCHHHHHHHHHH--------HHH
Confidence 66654321 677888889999999887753221 12235678889999999999999999999941 116
Q ss_pred CCe--EEEEecccccCC--CCCC--------------------C---------------C-CCCCcEEEEccccccccCC
Q psy16512 241 SNC--FVLLDAATYCGS--NMLD--------------------L---------------K-QHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 241 ~gi--~vivD~a~~~g~--~~~d--------------------l---------------~-~~~~D~vv~S~~K~~g~p~ 280 (815)
+|+ |+|||||++... .-++ + . -..+|.++..+||++..|.
T Consensus 310 ~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py 389 (608)
T TIGR03811 310 EGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY 389 (608)
T ss_pred cCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCC
Confidence 776 799999987532 1011 0 0 1258999999999998899
Q ss_pred cceEEEEecccccc-c--Ccccc-cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--Hhhh--hhH
Q psy16512 281 GLGALIVKQKSAHV-L--NKTFY-GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EKKR--KSF 352 (815)
Q Consensus 281 G~G~l~~~~~~~~~-l--~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~~~--~~~ 352 (815)
++|++++|+..... + ...|. ..+. .. + ........-|+.+-...+++..+++.+ ...| ..+
T Consensus 390 ~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~--------~~--p-~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i 458 (608)
T TIGR03811 390 SAGGIVIQDIRMRDVISYFATYVFEKGA--------DI--P-ALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLI 458 (608)
T ss_pred CeEEEEEeCHHHHHHHhcCcchhccccc--------cC--c-ccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999764321 1 11111 0000 00 0 000001112333334455666666665 2222 223
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCcEEE--cCCCCCCCCCcccceEEEEEecCCCCcc-CHHHHHHhhh-cCC-------
Q psy16512 353 TNAFELSQYTYFYFKQLSYSNGQPLVEL--YHDTDYGESKYQGNIVNFNLLHKDGTYY-GYSEVQNLAN-LKK------- 421 (815)
Q Consensus 353 ~~~~~l~~~l~~~L~~l~~~~~~p~~~l--~~~~~~~~~~~~~~i~~f~~~~~~~~~~-~~~~v~~~l~-~~g------- 421 (815)
++..++++++.+.|+++..--+.+.+++ +.+. .-++++|++.......+ ...++.+.+. ...
T Consensus 459 ~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~p-------dlniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~ 531 (608)
T TIGR03811 459 GASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKP-------DFNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIY 531 (608)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCeeEEecCCC-------CcceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCC
Confidence 8999999999999988521111245665 4332 36899999753222111 1222333321 111
Q ss_pred ---cEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc-CCCCceEEEEecc--CCCCHHHHHHHHHHHHHHH
Q psy16512 422 ---IQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII-DGKPTGSIRISYG--HASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 422 ---I~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~-~~~~~g~iRvs~g--~~~t~edi~~lv~~L~~~~ 495 (815)
..++...++... .|-.+.. ..+.||...+-+ ++..-..+|-++. +.++.+-++.+++.|++.+
T Consensus 532 ~~~~~~s~t~~~~~~-----yg~~~~~------~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~ 600 (608)
T TIGR03811 532 NNEFITSHTDFAIPD-----YGDSPFA------FVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAM 600 (608)
T ss_pred CcceEeeecccccch-----hhhhHHH------HHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHH
Confidence 222222222111 1111111 122344443211 2233478998865 3456678888888888877
Q ss_pred hhc
Q psy16512 496 LQQ 498 (815)
Q Consensus 496 ~~~ 498 (815)
.++
T Consensus 601 ~~~ 603 (608)
T TIGR03811 601 QEK 603 (608)
T ss_pred HHH
Confidence 654
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=146.78 Aligned_cols=315 Identities=14% Similarity=0.117 Sum_probs=197.6
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc------
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF------ 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~------ 146 (815)
..+.+.+++.+.+.......+. . .... ..++.++++++++.+ . ++|++++++|+..++..+..
T Consensus 54 ~~p~v~~a~~~~~~~~~~~~~~--~-~~~~----~~~l~~~l~~~~~~~--~--~~~~~SGs~A~e~ai~~a~~~~~~~~ 122 (401)
T TIGR01885 54 CHPKIVKALTEQAQKLTLSSRA--F-YNDV----FGEFAEYVTKLFGYD--K--VLPMNTGAEAVETAIKLARKWGYKVK 122 (401)
T ss_pred CCHHHHHHHHHHHHhccccccc--c-CCHH----HHHHHHHHHhhcCCC--E--EEEeCccHHHHHHHHHHHHHHhhhhc
Confidence 3688888887776542222211 1 2233 678899999999853 3 89999999999999887521
Q ss_pred --CCCc--EEEecCC-CcchhhHHHHhhc------cc-----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 147 --NEGS--FIYLTDN-HTSVLGMRELVKT------NQ-----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 147 --~~gd--vv~~~~~-h~s~~~~~~~~~~------~g-----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
..|+ ++..... |.+.......... .+ ...+... +++.++++++ ...++..+|++..+
T Consensus 123 ~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~----~~~~~~~avi~E~v 195 (401)
T TIGR01885 123 GIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN---NLEALEEALE----DHGPNVCAFIVEPI 195 (401)
T ss_pred CCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC---CHHHHHHHHH----hcCCCEEEEEEeCc
Confidence 1344 5555555 4344443333211 11 1111111 2344444332 11245789999999
Q ss_pred cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC--CC--CCCCCCCCcEEEEccccccccC-C
Q psy16512 211 SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS--NM--LDLKQHQPDFISISFYKMFGYP-T 280 (815)
Q Consensus 211 ~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~--~~--~dl~~~~~D~vv~S~~K~~g~p-~ 280 (815)
.+++|.+.| +++|.++|+ ++|+++++|+++. +|. .. .+.....+|++++ +|.+++. .
T Consensus 196 ~~~~G~~~~~~~~l~~l~~l~~-----------~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~--gK~l~~g~~ 262 (401)
T TIGR01885 196 QGEAGVVVPDDGYLKKVRELCT-----------KHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLL--GKALSGGVY 262 (401)
T ss_pred cCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEe--eccccCCCC
Confidence 999999998 888999998 8999999999963 221 11 1222346888765 4988732 1
Q ss_pred cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q psy16512 281 GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQ 360 (815)
Q Consensus 281 G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~ 360 (815)
-+|+++.++++.+.++.... .. ..+.+.+...++.++++.+... ...++...+.+
T Consensus 263 ~ig~v~~~~~i~~~~~~~~~-----------------------~~-t~~~~p~~~~aa~a~L~~i~~~-~l~~~~~~~~~ 317 (401)
T TIGR01885 263 PVSAVLADDDVMLTIKPGEH-----------------------GS-TYGGNPLACAVAVAALEVLEEE-KLAENAEKLGE 317 (401)
T ss_pred CcEEEEEcHHHHhhccCCCC-----------------------CC-CCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHH
Confidence 17888888877655532110 00 1123456677777888877653 12278888899
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
++.+.|+++.+ +.+..+ ...+.++.+.+..... .....++.+.|.++||.+.++.
T Consensus 318 ~~~~~L~~l~~----~~~~~~--------~g~g~~~~i~~~~~~~-~~~~~~l~~~l~~~Gv~v~~~~------------ 372 (401)
T TIGR01885 318 IFRDQLKKLPK----PIITEV--------RGRGLLNAIVIDESKT-GRTAWDLCLKLKEKGLLAKPTH------------ 372 (401)
T ss_pred HHHHHHHhccC----CceeEE--------eecCeeEEEEeccCcc-hhHHHHHHHHHHhCCEEEEecC------------
Confidence 99999988721 111111 1236777776654321 1123457788888999985421
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+.+|+++++..++++|++++++|++++
T Consensus 373 ---------------------------~~~lRi~p~l~~t~~~i~~~l~~l~~~l 400 (401)
T TIGR01885 373 ---------------------------GNIIRLAPPLVITEEQLDEGLEIIKKVI 400 (401)
T ss_pred ---------------------------CCEEEEeCCccCCHHHHHHHHHHHHHHh
Confidence 2689999999999999999999998865
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=158.45 Aligned_cols=239 Identities=13% Similarity=0.089 Sum_probs=161.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc-eEEcCch--h-
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ-IYSFSVD--D- 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g-~v~~~~~--~- 180 (815)
+.++++..|+.||++.. .++++|+|.++.+++.++. .+|| |++.+.+|-|++.. ..+++... ++....+ +
T Consensus 176 i~eAq~~AA~~fgAd~t---yFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n~~Gi 251 (720)
T PRK13578 176 AKDAQKHAAKVFNADKT---YFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARNPFGF 251 (720)
T ss_pred HHHHHHHHHHHhCCCce---EEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccccccCC
Confidence 88999999999999763 7889999999999999998 9999 99999999998874 66665555 4332221 1
Q ss_pred --hhcc-----hhhhhhhhhhh--hhcCCC-ccEEEEecccCCCccccChHHHHHH-hhccccccccccCCCCeEEEEec
Q psy16512 181 --ARNM-----LNEFKESQENV--ENMRHS-NSLFVYPAESNFSGTKYPLSWCNTV-HRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 181 --~~~~-----~~~~~~l~~~~--~~~~~~-t~lv~i~~~~n~tG~~~~l~~I~~l-~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
.++. +.++++|.+.. .....+ .++++++++ |..|.+++++.|+++ ++ .++ ++++|+
T Consensus 252 ~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h-----------~~~-~llvDE 318 (720)
T PRK13578 252 IGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGH-----------LCD-YILFDS 318 (720)
T ss_pred cCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhc-----------cCC-cEEEeC
Confidence 2233 33555443210 001112 488888876 577999999999998 56 677 999999
Q ss_pred ccccCC--CC----C--CCCCCCCc----EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccccc
Q psy16512 250 ATYCGS--NM----L--DLKQHQPD----FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIK 317 (815)
Q Consensus 250 a~~~g~--~~----~--dl~~~~~D----~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 317 (815)
||+.-. .+ + ..-..++| +++-|.||.+++.+..++|.++...++.-+..+ .. ..+
T Consensus 319 Ahgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v-~~---------~r~--- 385 (720)
T PRK13578 319 AWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYC-PH---------KRL--- 385 (720)
T ss_pred cchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccC-CH---------HHH---
Confidence 987532 12 1 11235788 999999999997777888888765432000000 00 000
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHH-HhccccCCCCcEEEcC
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYF-KQLSYSNGQPLVELYH 382 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L-~~l~~~~~~p~~~l~~ 382 (815)
...-.-+.+.+|+++.++++..+..++.. .|... +...+++..+++.| +.. ++++++.
T Consensus 386 -~~al~m~qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~------~~~~~~~ 446 (720)
T PRK13578 386 -NNAFMLHASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARC------KLIRPFI 446 (720)
T ss_pred -HHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhC------CCeeecc
Confidence 00001244668889999999888888775 55555 77888888888888 555 4566664
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-13 Score=139.31 Aligned_cols=325 Identities=13% Similarity=0.121 Sum_probs=212.5
Q ss_pred chhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CCCc
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGS 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~gd 150 (815)
.+.+.+++.+.+.....+.-... ...... ..++++.+|++.+-+.. ++|++... |+...+..+.. -||-
T Consensus 187 Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~----hv~LE~eLA~LHqK~aA---LlFsSCfV-ANDstLftLak~lpgc 258 (570)
T KOG1360|consen 187 HPEVLDAMHDTLDRHGAGAGGTRNISGHSKH----HVRLEAELADLHQKEAA---LLFSSCFV-ANDSTLFTLAKKLPGC 258 (570)
T ss_pred ChHHHHHHHHHHHHcCCCcCCccccCCCCch----hhhHHHHHHHHhcCcce---eeeeeeee-ccchHHHHHHHHCCCc
Confidence 36788888887765322221111 333344 66899999999986654 67765543 55555555431 3566
Q ss_pred EEEec-CCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 FIYLT-DNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 vv~~~-~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
.|+++ .+|.|++.-++-.+..-.+ +..+ |++.+++.|+ ......+|+|.+..+++++|.+.|+++|+++++
T Consensus 259 ei~SD~gNHASMI~GIrns~v~K~I-FrHN---D~~hL~~lL~---~~~~svPKivAFEtVhSM~GavcpleelcDvah- 330 (570)
T KOG1360|consen 259 EIFSDEGNHASMIQGIRNSRVPKHI-FRHN---DLDHLEQLLQ---SSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH- 330 (570)
T ss_pred EEeccccchHHHHHHhhhcCCccee-eccC---CHHHHHHHHH---hCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH-
Confidence 66664 6898876544432211122 2222 3334444332 112234899999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCC--------CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGS--------NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~--------~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
++|++.++|+.|++|. ..-|--....|++..++-|.||.- | ||+.....+++-++.+-.|
T Consensus 331 ----------~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcV-G-GYIAat~~LvDmiRSyAaG 398 (570)
T KOG1360|consen 331 ----------KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCV-G-GYIAATRKLVDMIRSYAAG 398 (570)
T ss_pred ----------HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhcccc-c-ceehhhhhHHHHHHHhcCc
Confidence 9999999999888763 222222345899999999999944 3 7887788877665433222
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
. ....+.+...+.++.++++++... |... ...++...++++.|.++ |+.
T Consensus 399 -F---------------------IFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~-------GiP 449 (570)
T KOG1360|consen 399 -F---------------------IFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMEL-------GIP 449 (570)
T ss_pred -e---------------------EEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHc-------CCc
Confidence 1 112356667777777888888754 3333 56677778888888887 666
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH-hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN-LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~-~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
++... +.|+.+.+.+..... ++.. ++.++||++-.-.+. ...
T Consensus 450 Vi~~p--------SHIiPv~vgda~l~~----~~sd~Li~~h~iYvQaINyP---TV~---------------------- 492 (570)
T KOG1360|consen 450 VIPNP--------SHIIPVRVGDAALAK----QASDILISKHNIYVQAINYP---TVA---------------------- 492 (570)
T ss_pred ccCCC--------cceeeeeccCHHHHH----HHHHHHHHhcCeEEEeccCC---ccc----------------------
Confidence 66433 578888887543221 2333 458999999765332 221
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
+.+..+||......|++.++.|+++|..++..-.
T Consensus 493 -------rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 493 -------RGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred -------ccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 1235799999999999999999999988765443
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=144.45 Aligned_cols=332 Identities=14% Similarity=0.151 Sum_probs=195.1
Q ss_pred ccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHh
Q psy16512 43 KTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 43 ~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~ 116 (815)
...-|.++..++ +..|+|..+ -+. .+++.+++.+++... ..+++ .. ..+++..+++
T Consensus 16 ~~~~G~~l~d~d------g~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~-~~~~~------~~----~~~~~~~la~ 77 (375)
T PRK04260 16 VKAEGNYLIDTD------GKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLI-WHSPN------LY----LNSLQEEVAQ 77 (375)
T ss_pred EEeeeCEEEeCC------CCEEEECCCCcccccCCC-CHHHHHHHHHHHHhc-CcccC------cc----CCHHHHHHHH
Confidence 344555555543 334556543 234 677888888777542 12222 12 3456667777
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhcc--CCCcEEEec-CCCcchhhHHHHhhcc------c-eEE-cCchhhhcch
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEGSFIYLT-DNHTSVLGMRELVKTN------Q-IYS-FSVDDARNML 185 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~gdvv~~~-~~h~s~~~~~~~~~~~------g-~v~-~~~~~~~~~~ 185 (815)
.+...++. .++|++++++|+..++..... ++.++|... ..|.+........... + .++ +......+.+
T Consensus 78 ~l~~~~~~-~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~ 156 (375)
T PRK04260 78 KLIGDKDY-LAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLN 156 (375)
T ss_pred HHhcCcCC-EEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHH
Confidence 65443332 368999999999988776531 223366654 4566655543332211 1 000 0000011333
Q ss_pred hhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC
Q psy16512 186 NEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML 258 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~ 258 (815)
.+++ .+.+++.+|++..++|++|...+ +++|.++|+ ++|+++++|+++. ++.. ..
T Consensus 157 ~l~~-------~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~-----------~~~~~~i~De~~~g~g~~g~~~ 218 (375)
T PRK04260 157 SVKA-------LVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQ-----------ETGILLIVDEVQTGMGRTGKLY 218 (375)
T ss_pred HHHH-------hcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcccchh
Confidence 3333 22356889999999999999876 688888888 8999999999974 2211 11
Q ss_pred C--CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 259 D--LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 259 d--l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
. .....+|++ |++|.++ + | +|++++++++.+.+.... .....+.+.+.
T Consensus 219 ~~~~~~~~pdi~--t~sK~l~-~-G~~ig~~~~~~~~~~~~~~~~------------------------~~~t~~~~~~~ 270 (375)
T PRK04260 219 AFEHYGIEPDIF--TLAKGLA-N-GVPVGAMLAKSSLGGAFGYGS------------------------HGSTFGGNKLS 270 (375)
T ss_pred hhHhhCCCCCEE--Eeccccc-C-CcceEEEEEcHHHHhhcCCCC------------------------CCCCCCcCHHH
Confidence 1 223457854 8999888 4 4 899999988765443210 01112345566
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
..++.++++.+... ...++.++..+++++.+.++.. ..+.+..+ ...+.++.+.+.. + ...+.
T Consensus 271 ~~aa~a~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~--------~~~g~~~~~~~~~-~-----~~~~~ 333 (375)
T PRK04260 271 MAAASATLDIMLTA-GFLEQALENGNYLQEQLQKALQ--DKETVTTV--------RGLGYMIGIETTA-D-----LSQLV 333 (375)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHh--hCCCeeEE--------eccceEEEEEecC-c-----HHHHH
Confidence 66666777666532 1225555555566665544310 00222211 1136777777632 2 23478
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.+.++||.+.+.. .+.+|++++...+++|++++++.|+++
T Consensus 334 ~~l~~~Gi~v~~~~---------------------------------------~~~lR~~~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 334 EAARDKGLIVLTAG---------------------------------------TNVIRLLPPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred HHHHhCCCEEecCC---------------------------------------CCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence 88889999985420 267999999999999999999999875
Q ss_pred H
Q psy16512 495 F 495 (815)
Q Consensus 495 ~ 495 (815)
+
T Consensus 375 ~ 375 (375)
T PRK04260 375 F 375 (375)
T ss_pred C
Confidence 3
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-12 Score=145.51 Aligned_cols=336 Identities=12% Similarity=0.084 Sum_probs=200.7
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ .+.-.+.+.+++.+++....+..+. ...+ ...++.+.++++++.+ . ++|++++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~---~~~~----~~~~la~~L~~~~~~~--~--~~f~~SG 141 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRA---FYND----KFPEFAEYLTSMFGYD--M--VLPMNTG 141 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccc---cCCH----HHHHHHHHHHhhcCCC--e--EEEeCCh
Confidence 3455666543 2233688888888877653222211 1122 2667888898988643 3 8999999
Q ss_pred hhhHHHHHhhhcc----C----CCc--EEEecCCCcc-hhhHHHHhhcc------c-----eEEcCchhhhcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEF----N----EGS--FIYLTDNHTS-VLGMRELVKTN------Q-----IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~----~----~gd--vv~~~~~h~s-~~~~~~~~~~~------g-----~v~~~~~~~~~~~~~~~~l 191 (815)
++|+..++..... . +++ +|.....|.. ........... + ...++.+ +++.+++.+
T Consensus 142 seA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~l 218 (474)
T PLN02624 142 AEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG---DLDALEKIF 218 (474)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC---CHHHHHHHH
Confidence 9999888864331 0 133 4444433322 22222211111 0 1111111 233444433
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC----CCCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS----NMLDLKQ 262 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~----~~~dl~~ 262 (815)
+ ...+++.+|+++.++|++|.++| +++|.++|+ +||+++|+|++|. +|. ...+...
T Consensus 219 ~----~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~-----------~~gillI~DEv~tG~GrtG~~~a~~~~~ 283 (474)
T PLN02624 219 E----EDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCS-----------KHNVLMIADEIQTGLARTGKMLACDWEE 283 (474)
T ss_pred H----hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCcCcCcchhhHHhcC
Confidence 2 12246889999999999999999 888888888 9999999999986 321 1112233
Q ss_pred CCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
..+|++++ +|.+|+. ..+|++++++++.+.+.+... ....+.+.....++.++
T Consensus 284 i~pDiv~l--sK~lggG~~pigav~~~~~i~~~~~~~~~------------------------~~T~~g~pl~~aaa~aa 337 (474)
T PLN02624 284 VRPDVVIL--GKALGGGVIPVSAVLADKDVMLCIKPGEH------------------------GSTFGGNPLASAVAMAA 337 (474)
T ss_pred CCCCEEEe--cccccCCCCcceeeeecHHHHhHhccCCc------------------------CCCCCCCHHHHHHHHHH
Confidence 46787775 6988843 137888888776544432110 01113456677777788
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 342 FDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 342 l~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
++.+.+. ...++..++.+++.+.|.++.... +. +..+ ...+.++.+.+...........++.+.|.++
T Consensus 338 Le~l~~~-~l~~~~~~~~~~l~~~L~~l~~~~--~~~i~~v--------rg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~ 406 (474)
T PLN02624 338 LQVVQDE-KLAERSAKLGQELRDQLQKIQKQF--PKLIKEV--------RGRGLLNAVVLNSPKLGPVSAYDVCLKLKER 406 (474)
T ss_pred HHHHHhc-hHHHHHHHHHHHHHHHHHHHHHhC--CCceEEE--------EeeEEEEEEEecCCCcChHHHHHHHHHHHhC
Confidence 8877643 122667777778887776652000 21 2211 1235666666643210001123567778889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCc
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~ 500 (815)
||.+.++. .++||+++++..|++||+.+++.|++++...-+
T Consensus 407 GV~v~p~~---------------------------------------~~~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~ 447 (474)
T PLN02624 407 GLLAKPTH---------------------------------------DTIIRLAPPLSISEDELQECSKALSDVLEHDLP 447 (474)
T ss_pred CeEEecCC---------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99986431 268999999999999999999999998766554
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=151.31 Aligned_cols=300 Identities=14% Similarity=0.103 Sum_probs=197.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--h--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--D-- 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~-- 180 (815)
+.++++..|+.||++.. .++++|+|.++.+++.++. .+|| |++.+.+|-|++....+.+... ++....+ +
T Consensus 197 i~eAe~~AA~~fgAd~t---yfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~~Gi~ 272 (714)
T PRK15400 197 HKEAEEYIARVFNADRS---YMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGIL 272 (714)
T ss_pred HHHHHHHHHHHhCCCcE---EEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccCCc
Confidence 88999999999999763 7888999999999999998 9999 9999999999988776666555 4432221 1
Q ss_pred -hhc-----chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 181 -ARN-----MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 181 -~~~-----~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
.++ .+.++++|.+... .++++.++++++ |..|.+++++.|.++++ .++ +++|+||+.-
T Consensus 273 g~I~~~~~~~e~i~~~i~~~p~--ak~p~~~vit~p-TYdG~~yd~~~I~~~~~-----------~~~--ilvDEAwgah 336 (714)
T PRK15400 273 GGIPQSEFQHATIAKRVKETPN--ATWPVHAVITNS-TYDGLLYNTDFIKKTLD-----------VKS--IHFDSAWVPY 336 (714)
T ss_pred cCCCccccCHHHHHHHHHhCcc--ccCccEEEEECC-CCccEecCHHHHHHHhC-----------CCC--EEEEccchhh
Confidence 123 4455554431110 122347777776 78899999999999998 666 6899998743
Q ss_pred C--CC-C-CCC--CCCC---c--EEEEccccccccCCcceEEEEecccc-cccCcccccCceEEEEecCCcccccccCcc
Q psy16512 255 S--NM-L-DLK--QHQP---D--FISISFYKMFGYPTGLGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 255 ~--~~-~-dl~--~~~~---D--~vv~S~~K~~g~p~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
. .+ + +.. ..+. | +++-|.||.+++.+..++|.++..+- +++...+
T Consensus 337 ~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~----------------------- 393 (714)
T PRK15400 337 TNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAY----------------------- 393 (714)
T ss_pred hccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHH-----------------------
Confidence 2 11 1 111 1233 4 88899999999776667777654321 0111110
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccCCCCc------EEEcCCCCCCC------
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSNGQPL------VELYHDTDYGE------ 388 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~------~~l~~~~~~~~------ 388 (815)
.-+.+.+|+++.++++..+..++.. .|... +...+++..+++.|.++ ++ ++++.+.....
T Consensus 394 ~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~------~~~~~~w~~~~~~~~~~~~~~~w~~ 467 (714)
T PRK15400 394 MMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRL------RTESDGWFFDVWQPDHIDTTECWPL 467 (714)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhC------CCcccCceEEecChhhcccchhccc
Confidence 1245668889999999999988875 55555 88888888999999887 33 55554321000
Q ss_pred ---------C-------CcccceEEEEEecC--CC----CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 389 ---------S-------KYQGNIVNFNLLHK--DG----TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 389 ---------~-------~~~~~i~~f~~~~~--~~----~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
. ...+.=+.+..++. ++ ..+....+.+.|.++||.+--..
T Consensus 468 ~p~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d------------------ 529 (714)
T PRK15400 468 RSDSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG------------------ 529 (714)
T ss_pred CccccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecC------------------
Confidence 0 00122233433331 11 12334457778888888874321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+=+-++..+|++++++|+++|.++
T Consensus 530 ---------------------~~~iLfl~s~g~t~~~~~~L~~aL~~f 556 (714)
T PRK15400 530 ---------------------PYNLLFLFSIGIDKTKALSLLRALTDF 556 (714)
T ss_pred ---------------------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 145666666778999999999999986
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-12 Score=141.94 Aligned_cols=312 Identities=12% Similarity=0.123 Sum_probs=186.4
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG- 149 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g- 149 (815)
+.-++.+.+++.+++..... ..... ..+. ..++.+.+.+..+. + .++|++++++|+..++......+|
T Consensus 44 G~~~p~v~~a~~~~~~~~~~--~~~~~-~~~~----~~~la~~l~~~~~~--~--~~~~~~sG~~a~~~A~~~a~~~~g~ 112 (377)
T PRK02936 44 GHCHPTVTKAVQEQLDDIWH--VSNLF-TNSL----QEEVASLLAENSAG--D--LVFFCNSGAEANEAALKLARKHTGK 112 (377)
T ss_pred CCCCHHHHHHHHHHHHhccc--ccccc-CCHH----HHHHHHHHHhcCCC--C--EEEEeCCcHHHHHHHHHHHHHhcCC
Confidence 34567888888887764211 11100 1111 34444555554433 2 389999999999999885431233
Q ss_pred -cEEEecCC-CcchhhHHHHhhccc----eEEcCchh-hh---cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 150 -SFIYLTDN-HTSVLGMRELVKTNQ----IYSFSVDD-AR---NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 150 -dvv~~~~~-h~s~~~~~~~~~~~g----~v~~~~~~-~~---~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
++|..... |.+.+.......... +.+..++. .. +++.+++ .+.+++++|+++.+++++|...+
T Consensus 113 ~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~~~~~~~~ii~e~i~~~~G~~~~ 185 (377)
T PRK02936 113 SKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKE-------VMNEEVAAVMLEVVQGEGGVIPA 185 (377)
T ss_pred CeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHH-------hccCCeEEEEEecccCCCCCccC
Confidence 36666544 544444333221111 11111110 00 2333333 33467899999999999887753
Q ss_pred ----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCC--CCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 220 ----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDL--KQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 ----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl--~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+++|.++|+ +||+++|+|+++. ++.. ++.. ....+|++ +++|.++ + | +|+++.+
T Consensus 186 ~~~~l~~l~~l~~-----------~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~-~-G~~ig~v~~~ 250 (377)
T PRK02936 186 DPAFLQEVQTLCK-----------KFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLG-N-GIPVGAMIGK 250 (377)
T ss_pred CHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEccccc-C-CCccEEEEEc
Confidence 677788888 9999999999974 2211 1111 12346754 6899998 4 5 7999888
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++.+.+.... .......|.+.+.++.++++.+... ...++..++.+++.+.|++
T Consensus 251 ~~~~~~~~~~~------------------------~~~t~~~~~~~~aaa~a~l~~~~~~-~~~~~~~~~~~~l~~~L~~ 305 (377)
T PRK02936 251 KELGTAFGPGS------------------------HGSTFGGNPLAMAAAKEVLQVIKQP-SFLEEVQEKGEYFLQKLQE 305 (377)
T ss_pred HHHHhhccCCC------------------------CCCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence 87765542211 0111135667777887888776432 2236777778888887766
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+. .+.+.+..+. ..+.++.+.+... ...+.+.|.++||.+.++.
T Consensus 306 ~~--~~~~~~~~v~--------~~g~~~~i~~~~~------~~~~~~~l~~~gv~v~~~g-------------------- 349 (377)
T PRK02936 306 EL--EHLECVKNIR--------GKGLMIGIECTEE------VAPVIEQLREEGLLVLSAG-------------------- 349 (377)
T ss_pred HH--hhCCcEEeEe--------ecceEEEEEecch------HHHHHHHHHHCCeEEecCC--------------------
Confidence 31 0012222221 1256777777532 2357788889999886421
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|++++...+++++++++++|++++
T Consensus 350 -------------------~~~lRi~p~~~~~~~~i~~~i~~l~~~~ 377 (377)
T PRK02936 350 -------------------PNVIRLLPPLVVTKEELDQAVYLLKKVL 377 (377)
T ss_pred -------------------CCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence 2689999988899999999999998753
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=133.09 Aligned_cols=291 Identities=13% Similarity=0.137 Sum_probs=183.4
Q ss_pred HHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEEecCCCcchhhHHHHhhccc--eEEcCchhhhc
Q psy16512 108 DQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARN 183 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~ 183 (815)
.+++..+++--+..++. |.++.|+.+.|.+++++.. -||. ++...++|..+.--+.. ...+ .+|..++..++
T Consensus 72 k~ls~a~~~dkpLt~dn--ic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~i-Nd~eVvkvpl~pdF~ln 147 (375)
T KOG0633|consen 72 KRLSDALAQDKPLTSDN--ICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAI-NDAEVVKVPLNPDFSLN 147 (375)
T ss_pred chhhhhcccCCCCCccc--eEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeec-CCceEEEecCCCCcccc
Confidence 34555556656667777 9999999999999999998 8884 77777666443222211 1122 56777787888
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc--cCC-CCCC-
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY--CGS-NMLD- 259 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~--~g~-~~~d- 259 (815)
.+++.+.++ .+...+++++++|.||||.....+.|.++.+. -.+.+|+||+|+- .|. ....
T Consensus 148 vdai~evl~-----~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~----------p~nglVVvDEAYidFsg~~S~~~l 212 (375)
T KOG0633|consen 148 VDAIAEVLE-----LDSKIKCIFLTSPGNPTGSIIKEDDILKILEM----------PDNGLVVVDEAYIDFSGVESRMKL 212 (375)
T ss_pred HHHHHHHHh-----ccccceEEEEcCCCCCCcccccHHHHHHHHhC----------CCCcEEEEeeeeEeeccccccchH
Confidence 888876553 34568999999999999999999999999982 3367899998843 221 1112
Q ss_pred CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
+.++..-+++-+++|.|| .+| +|+-+.+.++++.+...-. +-..+.++-.+
T Consensus 213 V~kYpNLivlqTlSKsfG-LAGiRvG~~~~~~~ia~iln~~Ka--------------------------PYNiS~~~s~~ 265 (375)
T KOG0633|consen 213 VKKYPNLIVLQTLSKSFG-LAGIRVGYGAFPLSIAEILNRAKA--------------------------PYNISVAGSVA 265 (375)
T ss_pred hHhCCceeehhhhhhhcC-cceeEeecccccHHHHHHHHhccC--------------------------CccccchhHHH
Confidence 223344456669999999 878 7888888777654421110 00122222222
Q ss_pred HHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 338 LKYGFD--TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 338 l~~al~--~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
+.+|+. -...+.....-+.+.+.+|...|.++ |++.-+. . ....+++.+++.+.+.. .......+
T Consensus 266 AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v------~~~~~~~-g-----g~daNFiLi~v~~~~n~-~akkly~q 332 (375)
T KOG0633|consen 266 ALAALSDSNGKKMEDVRDAIVRERERLFKELTEV------PFLNDYP-G-----GSDANFILIEVTGGDNG-MAKKLYKQ 332 (375)
T ss_pred HHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcC------ccccCCC-C-----cccccEEEEEEcCCCcH-HHHHHHHH
Confidence 222322 11111111144455566677777777 4433221 1 12378888888765432 22233566
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+.+.|+.||.... ...+ .|++|++.| |+|+.+-|++.++++
T Consensus 333 ~at~~gVvVRfrgs--e~~c--------------------------------~G~lRitvG---t~EentvL~k~~K~~ 374 (375)
T KOG0633|consen 333 DATKMGVVVRFRGS--EEGC--------------------------------KGYLRITVG---TPEENTVLMKCLKQF 374 (375)
T ss_pred HHHhcceEEEEcCC--cccc--------------------------------ceeEEEEcC---CcccchHHHHHHHhh
Confidence 77899999984210 0001 489999999 889999999998875
|
|
| >KOG3258|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-15 Score=122.24 Aligned_cols=55 Identities=75% Similarity=1.333 Sum_probs=52.4
Q ss_pred CCCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 2 QCLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 2 ~~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
..+||||||+.+|.|+-+|++++|+|+++.+-+||||++||+|.||||||.++.+
T Consensus 78 ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~pv~TdpP~KtkfGYHiImvEGr 132 (133)
T KOG3258|consen 78 ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDKPVYTDPPVKTKFGYHIIMVEGR 132 (133)
T ss_pred cccCCcccceeccccccchhhhhhcccccccCCccccCCCcccccceEEEEeccc
Confidence 4689999999999999999999999999999999999999999999999999764
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-12 Score=141.42 Aligned_cols=340 Identities=13% Similarity=0.083 Sum_probs=200.5
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..... ...+. ..++.++|++.+....+ .+.|++++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~--~~~~~----~~~la~~l~~~~p~~~~--~v~f~~sG 111 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAG--FTHEP----AERLAQRLVALTPGGLD--HVFFSDSG 111 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccc--cCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 3456777543 23445788888877776422111100 01122 44666777777642223 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhcc-----------c--eEEcCchh--hhcchhhhh
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKTN-----------Q--IYSFSVDD--ARNMLNEFK 189 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~~-----------g--~v~~~~~~--~~~~~~~~~ 189 (815)
++|++.++..... ++|. ||.....|.. ...+....... + .++...++ ..+.+.+++
T Consensus 112 seA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~ 191 (423)
T PRK05964 112 SVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEA 191 (423)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHH
Confidence 9999988775531 1343 6666655544 33333222111 0 12222111 111233333
Q ss_pred hhhhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CC
Q psy16512 190 ESQENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LD 259 (815)
Q Consensus 190 ~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~d 259 (815)
.+. ...++..+|++.. ++...|...+ +++|.++|+ +||+++|+|+++. +|.. . .+
T Consensus 192 ~l~----~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~-----------~~g~llI~DEv~tg~gr~G~~~a~~ 256 (423)
T PRK05964 192 LLE----KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICD-----------RHGVLLIFDEIATGFGRTGTLFACE 256 (423)
T ss_pred HHH----hCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcCcchhHHH
Confidence 221 1124567777776 5777888775 666777887 9999999999974 3211 1 12
Q ss_pred CCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC--CCChhHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG--TVNYLAII 336 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g--t~~~~~~~ 336 (815)
.....+|+++ +.|++++. ..+|+++.++++.+.+.... .+. ..+..+ +.|..++.
T Consensus 257 ~~~v~pDi~~--~~K~l~gG~~p~~av~~~~~i~~~~~~~~-~~~-------------------~~~~~~T~~~np~~~a 314 (423)
T PRK05964 257 QAGVSPDIMC--LSKGLTGGYLPLAATLCTAEIFEAFYSDD-RAK-------------------AFMHSPSYTANPLACA 314 (423)
T ss_pred hcCCCCCeee--eehhhhcCcccceEEEEcHHHHHhhhcCC-ccc-------------------ccccCCCCCcCHHHHH
Confidence 2233578764 56988744 24788888888776553210 000 001122 35777888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
++.++++.+... ...+++..+.+++.+.|+++. ..|.+.-+ ...+.++.+.+.+.+... ....+.+.
T Consensus 315 aa~a~l~~l~~~-~~~~~~~~~g~~l~~~l~~l~---~~~~i~~v--------rg~Gl~~~i~l~~~~~~~-~~~~l~~~ 381 (423)
T PRK05964 315 AANASLDLFEDE-PVLERVAALSAGLAEGLEPFR---DLPGVADV--------RVLGAIGAVELDRPVLER-DGPALRAF 381 (423)
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhhc---cCCCeEEe--------ecccEEEEEEeccCcchh-HHHHHHHH
Confidence 888888877653 223888888899998887762 11333211 223677788886432100 12357788
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.++||.+... .+.+|+++++.+|++|||+++++|++.+.
T Consensus 382 l~~~Gv~v~~~----------------------------------------~~~lR~~p~l~~t~edId~~v~~l~~al~ 421 (423)
T PRK05964 382 ALERGVLLRPL----------------------------------------GNTIYLMPPYIITAEELDRITDAIVEVAD 421 (423)
T ss_pred HHHCCeEEEec----------------------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHh
Confidence 88999988631 15799999999999999999999999875
Q ss_pred h
Q psy16512 497 Q 497 (815)
Q Consensus 497 ~ 497 (815)
+
T Consensus 422 ~ 422 (423)
T PRK05964 422 E 422 (423)
T ss_pred h
Confidence 3
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.7e-12 Score=145.03 Aligned_cols=305 Identities=12% Similarity=0.091 Sum_probs=196.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--h--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--D-- 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~-- 180 (815)
+.++++..|+.||++.. .++++|+|.++.+++.++. .+|| |++.+.+|-|++....+.+... ++....+ +
T Consensus 197 i~eAe~~aA~~fgAd~t---yfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~~Gi~ 272 (713)
T PRK15399 197 HLEAEEYIARTFGAEQS---YIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNALGIL 272 (713)
T ss_pred HHHHHHHHHHHhCCCcE---EEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHcCCeeEEecccccccCCc
Confidence 78999999999999763 7889999999999999998 9999 9999999999988766666555 4332211 1
Q ss_pred -hhcc-----hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 181 -ARNM-----LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 181 -~~~~-----~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
.++. +.++++|.+... .+++++++++++ |..|.+++++.|.+++. -. ++++|+||+.-
T Consensus 273 g~I~~~~~~~e~I~~~i~~~p~--~~~p~~vvit~p-TYdGi~yd~~~I~~~~g-----------~~--~ilvDEAhgah 336 (713)
T PRK15399 273 GGIPRREFTRDSIEEKVAATTQ--AQWPVHAVITNS-TYDGLLYNTDWIKQTLD-----------VP--SIHFDSAWVPY 336 (713)
T ss_pred CCCChhhccHHHHHHHHHhCCC--cCCceEEEEECC-CCCceeeCHHHHHHHhC-----------CC--EEEEeccchhh
Confidence 1233 455554431111 123468888877 78899999999988875 11 45799998742
Q ss_pred C--CC-C-CCCC--C--CCcEE---EEccccccccCCcceEEEEecccc-cccCcccccCceEEEEecCCcccccccCcc
Q psy16512 255 S--NM-L-DLKQ--H--QPDFI---SISFYKMFGYPTGLGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 255 ~--~~-~-dl~~--~--~~D~v---v~S~~K~~g~p~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
. .+ + +... . ++|.+ +-|.||.+++.+..+++.++...- ++++..+
T Consensus 337 ~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~----------------------- 393 (713)
T PRK15399 337 THFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAF----------------------- 393 (713)
T ss_pred hhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHH-----------------------
Confidence 2 12 1 1111 1 46766 789999999887788888865421 1111111
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCC-----------
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGE----------- 388 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~----------- 388 (815)
.-+.+.+|+++.++++..+..++.. .|... ++..+++..+++.+.++...- .+. ++++.+.....
T Consensus 394 ~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~-~~w~f~~~~~~~~~~~~~w~l~p~~~ 472 (713)
T PRK15399 394 MMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREES-DGWFFDIWQPENVDEAECWPVAPGEQ 472 (713)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccc-cCceeeecCccccCCccceecCCCcc
Confidence 1244568889999999999988874 55555 888888888898888762100 000 34443311000
Q ss_pred ----C-------CcccceEEEEEecCC------CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 389 ----S-------KYQGNIVNFNLLHKD------GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 389 ----~-------~~~~~i~~f~~~~~~------~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
. ...+.=+.+..++.+ ...+.-..+.+.|.++||.+--..
T Consensus 473 whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d----------------------- 529 (713)
T PRK15399 473 WHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG----------------------- 529 (713)
T ss_pred cccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecC-----------------------
Confidence 0 001222334443221 112344457778888888874321
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+=+-++..+|++++++|+++|.++
T Consensus 530 ----------------~~~vL~l~s~g~t~~~~~~L~~aL~~f 556 (713)
T PRK15399 530 ----------------PYNLLFLFSIGIDKTKAMGLLRGLTEF 556 (713)
T ss_pred ----------------CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 144556666678999999999999986
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=137.85 Aligned_cols=294 Identities=13% Similarity=0.145 Sum_probs=196.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcch
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNML 185 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~ 185 (815)
..++++.+|+++|.+.. ++|.-|- ..+.+.+-++. .+|. ++-...+|.|+..-.++.+.. ..-...++..+++
T Consensus 184 hkelE~l~A~f~g~e~a---~vF~mGf-~TNs~~~p~l~-~~gsLIiSDelNHaSi~~GaRLSgAt-iRVfkHNdm~~LE 257 (519)
T KOG1357|consen 184 HKELEELVARFLGVEDA---IVFSMGF-ATNSMNIPSLL-GKGSLIISDELNHASLITGARLSGAT-TRVFRHNDMQGLE 257 (519)
T ss_pred HHHHHHHHHHhcCCcce---EEEeccc-cccccCcceee-cCCcceeeccccchheeccccccCce-EEEEecCCHHHHH
Confidence 77899999999998764 8888774 25556677777 8888 555567999986544443322 2222333344444
Q ss_pred hhhhhhhhhhhhcCCC------ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-
Q psy16512 186 NEFKESQENVENMRHS------NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML- 258 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~------t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~- 258 (815)
++. +.......|+ .-+|+.....++-|.+.++.++.++.+ ++.+++++|+||+.|+...
T Consensus 258 r~L---rd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkk-----------kykayl~lDEAHSiGA~g~t 323 (519)
T KOG1357|consen 258 RLL---RDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKK-----------KYKAYLYLDEAHSIGAMGAT 323 (519)
T ss_pred HHH---HHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhc-----------cccEEEEeeccccccccCCC
Confidence 332 2111122233 247777888889999999999999999 8999999999999887532
Q ss_pred --------CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 259 --------DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 259 --------dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
..+...+|++..+|.|.|| .. -|++..++++++.++.... ......+.
T Consensus 324 Grgvce~~g~d~~dvDImMGtftKSfg-a~-GGyiagsk~lid~lrt~s~----------------------~~~yat~~ 379 (519)
T KOG1357|consen 324 GRGVCEYFGVDPEDVDIMMGTFTKSFG-AA-GGYIAGSKELIDYLRTPSP----------------------SALYATSL 379 (519)
T ss_pred CcceeeccCCCchhheeecceehhhcc-cc-cceecCcHHHHhhhccCCC----------------------ceeecccC
Confidence 2223357899999999999 43 3788888888765532210 01112233
Q ss_pred ChhHHHHHHHHHHHHHhh-----hhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 331 NYLAIISLKYGFDTMEKK-----RKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~-----~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
+.+.+.....++..+... |... +++.+.+.+++..|+.. ++.+++... ++++.+.+-...
T Consensus 380 sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~-------gfivyG~~d-------SpVvplll~~~~ 445 (519)
T KOG1357|consen 380 SPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKM-------GFIVYGNND-------SPVVPLLLYGPA 445 (519)
T ss_pred ChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcC-------cEEEecCCC-------CCcceeeecCcc
Confidence 444444444566665521 1222 88888888999999887 899998765 556555554333
Q ss_pred CCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
.-. .+.+.+.+++|.+....+...+... +.+|++....++.|++
T Consensus 446 k~~----~f~r~~l~~nigvVvvgfPatpl~e--------------------------------~r~R~c~Sa~ht~e~l 489 (519)
T KOG1357|consen 446 KIV----AFSREMLERNIGVVVVGFPATPLLE--------------------------------SRARFCLSASHTKEDL 489 (519)
T ss_pred ccc----HHHHHHHhcCceEEEEeCCCchHHH--------------------------------hHHHhhhcccccHHHH
Confidence 222 3677888888887766555544332 5689999999999999
Q ss_pred HHHHHHHHHH
Q psy16512 485 KYFLSFLNQY 494 (815)
Q Consensus 485 ~~lv~~L~~~ 494 (815)
+++++++.+.
T Consensus 490 d~~l~~i~~~ 499 (519)
T KOG1357|consen 490 DRALEVIDRV 499 (519)
T ss_pred HHHHHHHhhh
Confidence 9999999874
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.1e-12 Score=141.41 Aligned_cols=327 Identities=13% Similarity=0.095 Sum_probs=195.3
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+.+.+++.+++......... ..... ..++.++|+++++.+ . +.|+++++
T Consensus 34 G~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~---~~~~~----~~~la~~L~~~~~~~--~--~~f~~SGs 102 (397)
T TIGR03246 34 GKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNG---YTNEP----VLRLAKKLVDATFAD--K--VFFCNSGA 102 (397)
T ss_pred CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCc---cCCHH----HHHHHHHHHhhCCCC--E--EEEeCCcH
Confidence 445666543 2334678888887776542111111 11222 667888999988643 3 99999999
Q ss_pred hhHHHHHhhhcc--------CCCcEEEecC-CCcchhhHHHHhhccc----eEEcCchh----hhcchhhhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF--------NEGSFIYLTD-NHTSVLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKESQENVEN 197 (815)
Q Consensus 135 ~al~~~~~al~~--------~~gdvv~~~~-~h~s~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~l~~~~~~ 197 (815)
+|+..++..... ++.++|.... .|.+............ +-+...+- ..+++.+++ .
T Consensus 103 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~ 175 (397)
T TIGR03246 103 EANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKA-------L 175 (397)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHH-------H
Confidence 999999887621 2233555554 4555544333322110 11111100 013334443 2
Q ss_pred cCCCccEEEEecccCCCcccc-C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCC--CCCCcEE
Q psy16512 198 MRHSNSLFVYPAESNFSGTKY-P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLK--QHQPDFI 268 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~~~-~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~--~~~~D~v 268 (815)
+.+++++|+++.++++.|... | +++|.++|+ +||+++|+|+++. +|... .... ...+|++
T Consensus 176 l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~ 244 (397)
T TIGR03246 176 ISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCD-----------RHNALLIFDEVQTGVGRTGELYAYMHYGVTPDIL 244 (397)
T ss_pred hccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhcCCccccchhhhhcCCCCCEE
Confidence 335789999998888888765 3 666777777 9999999999972 21110 1111 2247876
Q ss_pred EEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH
Q psy16512 269 SISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346 (815)
Q Consensus 269 v~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~ 346 (815)
+++|.++ . | +|++++++++.+.+..... .... +.+..+..++.++++.+.
T Consensus 245 --t~~K~lg-g-G~pigav~~~~~i~~~~~~~~~-----------------------~~t~-~~~p~~~aaa~a~l~~~~ 296 (397)
T TIGR03246 245 --TSAKALG-G-GFPIGAMLTTTEIAAHLKVGTH-----------------------GTTY-GGNPLACAVAGKVLDLVN 296 (397)
T ss_pred --Eeehhhh-C-CcceeEEEEcHHHHHhccCCCc-----------------------CCCC-CCCHHHHHHHHHHHHHHh
Confidence 6789886 2 4 7999998887655532110 0111 235566777777787765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
.. ...++.+++.+++.+.|+++... .+.+.-+ ...+.++.+.+...... ....+.+.|.++||.+..
T Consensus 297 ~~-~l~~~~~~~~~~l~~~L~~l~~~--~~~~~~v--------rg~G~~~~i~~~~~~~~--~~~~~~~~l~~~Gv~~~~ 363 (397)
T TIGR03246 297 TP-ELLAGVKQRHDLFVDGLEKINAR--YNVFSEI--------RGKGLLIGAVLTEAYQG--KAKQFVNAAAEEGVIALI 363 (397)
T ss_pred hc-cHHHHHHHHHHHHHHHHHHHHhc--CCCeEee--------ecCceEEEEEEcCchhh--HHHHHHHHHHHCCeEEee
Confidence 32 22388889999999999876210 0111111 12356666665431110 123477788889998753
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
. | .+++|+++.+..|++|+++++++|.+++.
T Consensus 364 ~-------------------------------------g--~~~lR~~p~~~~t~~~i~~~~~~l~~~l~ 394 (397)
T TIGR03246 364 A-------------------------------------G--PNVVRFAPSLVISDDDIDEGLARFERAIE 394 (397)
T ss_pred c-------------------------------------C--CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 0 26899999999999999999999998764
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=136.97 Aligned_cols=324 Identities=14% Similarity=0.099 Sum_probs=191.3
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+++.+++.+++......++. . ..+. ..++.+.+.+..+. + .++|+++++
T Consensus 35 G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~--~-~~~~----~~~la~~l~~~~~~--~--~v~f~~SGs 103 (395)
T PRK03715 35 GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPA--F-YNEP----MAKLAGLLTQHSCF--D--KVFFANSGA 103 (395)
T ss_pred CCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccccc--c-cCHH----HHHHHHHHhhccCC--C--EEEEeCCcH
Confidence 456666542 2333578888887776542222211 0 1111 33344444443322 3 399999999
Q ss_pred hhHHHHHhhhcc-----CCC--cEEEec-CCCcchhhHHHHhhccc----eEEcCchh----hhcchhhhhhhhhhhhhc
Q psy16512 135 SAIKTVSEYFEF-----NEG--SFIYLT-DNHTSVLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKESQENVENM 198 (815)
Q Consensus 135 ~al~~~~~al~~-----~~g--dvv~~~-~~h~s~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~l~~~~~~~ 198 (815)
+|+..++..+.. ++| ++|... ..|.+........+... +.|..... ..+++.+++ .+
T Consensus 104 eA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~l 176 (395)
T PRK03715 104 EANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEK-------LI 176 (395)
T ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHH-------Hc
Confidence 999998887641 123 365555 45666555444433221 11111100 112333333 23
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC----CCCCCCCCcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM----LDLKQHQPDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~----~dl~~~~~D~vv 269 (815)
.+++.+|++..+++..|.+.| +++|.++|+ ++|+++|+|+++. +|..- .+.....+|+++
T Consensus 177 ~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t 245 (395)
T PRK03715 177 TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTK-----------QHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMT 245 (395)
T ss_pred CCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCCCcchhhHhhcCCCCceee
Confidence 356889999999999999887 888888998 8999999999876 22110 111123589754
Q ss_pred EccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 270 ISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 270 ~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
+.|.+++..-+|++++++++.. +.+.. .....+.+..+.++..++++.+.+.
T Consensus 246 --~gK~lg~G~p~~av~~~~~i~~-~~~~~------------------------~~~T~~g~pl~~aaala~L~~l~~~- 297 (395)
T PRK03715 246 --LGKGIGGGVPLAALLAKAEVAV-FEAGD------------------------QGGTYNGNPLMTAVGVAVISQLLAP- 297 (395)
T ss_pred --ehhhhhCCcceEEEEEcccccc-ccCCC------------------------cCCCCCCCHHHHHHHHHHHHHHHhc-
Confidence 4698874222788888877641 11100 0001123566777777888887642
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC---CcEecc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK---KIQLRT 426 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~---gI~v~~ 426 (815)
...++.+++.+++.+.|+++.... ++.-+ ...+.++.+.+.+.... .+.+.+.+. ||.+..
T Consensus 298 ~l~~~~~~~g~~l~~~L~~l~~~~---~i~~v--------rG~Glm~~i~l~~~~~~-----~~~~~~~~~~~~Gi~~~~ 361 (395)
T PRK03715 298 GFLEGVRARGEYLKEKLLELSEER---GLEGE--------RGEGLLRALLLGKDIGP-----QIVEKARDMQPDGLLLNA 361 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcC---CcCeE--------EcceeEEEEEecCchHH-----HHHHHHHhccCCCEEEee
Confidence 233888999999999988762110 11111 23477888887542111 244444444 888752
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.. ...+|+++.+..|++||++++++|++.+.
T Consensus 362 ~~---------------------------------------~~~lR~~p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 362 PR---------------------------------------PNLLRFMPALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred cC---------------------------------------CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 10 25799999999999999999999998875
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-11 Score=138.03 Aligned_cols=323 Identities=13% Similarity=0.106 Sum_probs=189.9
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+++.+++.+++...... . ....... ..++.++++++++.+ . +.|+++++
T Consensus 39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~--~-~~~~~~~----~~~l~~~l~~~~~~~--~--~~~~~sGs 107 (403)
T PRK05093 39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHI--S-NVFTNEP----ALRLAKKLIDATFAE--R--VFFANSGA 107 (403)
T ss_pred CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcc--c-CccCCHH----HHHHHHHHHhhCCCC--E--EEEeCchH
Confidence 344555433 3345577788887776531111 1 0111122 457778888877642 3 89999999
Q ss_pred hhHHHHHhhhcc--------CCCcEEEecC-CCcchhhHHHHhhc----cc-------eEEcCchhhhcchhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF--------NEGSFIYLTD-NHTSVLGMRELVKT----NQ-------IYSFSVDDARNMLNEFKESQEN 194 (815)
Q Consensus 135 ~al~~~~~al~~--------~~gdvv~~~~-~h~s~~~~~~~~~~----~g-------~v~~~~~~~~~~~~~~~~l~~~ 194 (815)
+|+..++..... ++..+|.... .|.+.......... .+ ...++.+ |.+.+++
T Consensus 108 eA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~----- 179 (403)
T PRK05093 108 EANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN---DLAAVKA----- 179 (403)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC---CHHHHHH-----
Confidence 999888875421 2233655554 45554443332111 01 1111111 2333333
Q ss_pred hhhcCCCccEEEEecccCCCccc-cC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTK-YP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQ 264 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~-~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~ 264 (815)
.+.+++++|+++. .|++|-. .| +++|.++|+ +||+++|+|+++. ++.. .. ......
T Consensus 180 --~l~~~~aaiiiep-~~~~gg~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~ 245 (403)
T PRK05093 180 --VIDDHTCAVVVEP-IQGEGGVIPATPEFLQGLRELCD-----------QHNALLIFDEVQTGMGRTGDLFAYMHYGVT 245 (403)
T ss_pred --HhcCCeEEEEEec-ccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCCCccchhhhhcCCC
Confidence 2345688999984 5555544 33 677788888 9999999999876 2211 11 112234
Q ss_pred CcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
+|+ .|++|.++ + | +|++++++++.+.+.....+ . ....+.+...++.+++
T Consensus 246 pdi--~s~sK~l~-~-G~rig~vv~~~~i~~~l~~~~~~-----------------------~-t~~~~~~~~~aa~a~L 297 (403)
T PRK05093 246 PDI--LTSAKALG-G-GFPIGAMLTTAEIASHFKVGTHG-----------------------S-TYGGNPLACAVAEAVF 297 (403)
T ss_pred CCE--EEeccccc-C-CcceEEEEEcHHHHhhcCCCCCC-----------------------C-CCCCCHHHHHHHHHHH
Confidence 674 57899998 5 6 89999998887665332100 1 1134556677777778
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCc
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKI 422 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI 422 (815)
+.+.. ....++.+++++++.+.|+++.... +.+. .. ...+.++.+.++..... ...++...|.++||
T Consensus 298 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~--~~------~~~G~~~~~~l~~~~~~--~~~~~~~~l~~~Gv 364 (403)
T PRK05093 298 DIINT-PEVLEGVKARRQRFVDGLQKINQKY--GVFS--EI------RGMGLLIGAELKPQYKG--RARDFLNAAAEEGV 364 (403)
T ss_pred HHHhh-ccHHHHHHHHHHHHHHHHHHHHhhC--CCeE--eE------eeCceEEEEEecCcchh--HHHHHHHHHHHCCe
Confidence 77643 2223788888999999998761000 1111 11 12256666666432100 12346677778899
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.++. .+++|+++++..++++++.++++|.+++.
T Consensus 365 ~v~~~g---------------------------------------~~~lRl~~~~~~~~~~i~~~~~~l~~~l~ 399 (403)
T PRK05093 365 MVLVAG---------------------------------------PDVLRFAPSLVIEEADIDEGLARFEKAVA 399 (403)
T ss_pred EEecCC---------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 886420 26899999988899999999999999774
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-11 Score=132.52 Aligned_cols=313 Identities=11% Similarity=0.096 Sum_probs=188.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eEEc--C-----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IYSF--S----- 177 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~--~----- 177 (815)
+.++++.+++++|.+. +++++++|.|++++..... ++||.| +...|...... .....| .+.+ +
T Consensus 73 ~~~lE~~va~~~G~~~----av~v~sGT~Al~ll~~l~l-~pGDeV-psn~~f~Tt~a--hIe~~Gav~vDi~~dea~~~ 144 (450)
T TIGR02618 73 FYHLERTVRELYGFKY----VVPTHQGRGAENLLSQIAI-KPGDYV-PGNMYFTTTRY--HQEKNGATFVDIIIDEAHDA 144 (450)
T ss_pred HHHHHHHHHHHHCCCe----EEEcCCHHHHHHHHHHhCC-CCcCEE-CCceeHHHHHH--HHHhCCeEEEeeeccccccc
Confidence 8899999999999875 8999999999998764444 899965 44444222221 122333 3333 2
Q ss_pred -----chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccC---hHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 178 -----VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 178 -----~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
..+.++++.++++|+ +...+++++|.+...+|.. |..+| +++|.++|+ ++|+.||+|
T Consensus 145 ~~~~p~~GniD~~~Le~aI~---~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~-----------~~Gl~vi~D 210 (450)
T TIGR02618 145 QLNIPFKGNVDLKKLQKLID---EVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCE-----------AHGIKVFYD 210 (450)
T ss_pred ccCCCCCCCcCHHHHHHHhc---cccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHH-----------HcCCEEEEE
Confidence 135667888777553 1112246688888888866 78866 566777777 999999999
Q ss_pred cccccCCCCC-----------CCC------CCCCcEEEEccccccccCCcceEEEEe-cccccccCcc--cccCceEEEE
Q psy16512 249 AATYCGSNML-----------DLK------QHQPDFISISFYKMFGYPTGLGALIVK-QKSAHVLNKT--FYGGGTVKIS 308 (815)
Q Consensus 249 ~a~~~g~~~~-----------dl~------~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l~~~--~~g~~~~~~~ 308 (815)
+|++++...+ ++. ....|.+++|++|.++.|.| |++..+ +++.++++.. .++ |.
T Consensus 211 aAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~e-G~---- 284 (450)
T TIGR02618 211 ATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFE-GM---- 284 (450)
T ss_pred ccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcC-Cc----
Confidence 9998853211 110 01479999999999997865 555544 4555555433 221 11
Q ss_pred ecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC
Q psy16512 309 MANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~ 387 (815)
...|......+.|+..+++..... .+ ++....+++|.+.|.+. |+.+..|.+
T Consensus 285 ----------------~tyGgla~r~~~ala~gL~e~~~~--~y~~~r~~~a~~La~~L~~~-------Gvpv~~p~g-- 337 (450)
T TIGR02618 285 ----------------PSYGGLAGRDMEAMAIGIREAVDY--EYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG-- 337 (450)
T ss_pred ----------------cccCchhhhhHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHC-------CCcccCCCC--
Confidence 112333334555555555543221 23 66666789999999987 777766554
Q ss_pred CCCcccceEEEEEe----cCCCCccCHHHHHHhh-hcCCcEec-cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 388 ESKYQGNIVNFNLL----HKDGTYYGYSEVQNLA-NLKKIQLR-TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 388 ~~~~~~~i~~f~~~----~~~~~~~~~~~v~~~l-~~~gI~v~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
++.+.+... +.....+....+...| .+.||-.. -|++ .+|.+++ .|+..
T Consensus 338 -----gh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e~g~~--------~~~~~~~-----------~~~~~- 392 (450)
T TIGR02618 338 -----GHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSMERGIV--------SAGRNNV-----------TGEHH- 392 (450)
T ss_pred -----cceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEeecce--------ecccCCC-----------CCccc-
Confidence 677777643 3344444333344333 56665421 1211 0121110 00000
Q ss_pred ccCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCccc
Q psy16512 462 IIDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADFV 502 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~~ 502 (815)
.-+-..+|+.+.-- =|.+.+|+.+++|..++.+.....
T Consensus 393 ---~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~ 431 (450)
T TIGR02618 393 ---RPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDDIR 431 (450)
T ss_pred ---CCccceeeeccccccccHhHHHHHHHHHHHHHhhHhhcC
Confidence 00025799998742 167999999999999887666543
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-11 Score=145.81 Aligned_cols=297 Identities=13% Similarity=0.073 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC--Cc-EEEecCCCcchhhH-HHHhhccc--eEEcC
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE--GS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFS 177 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~--gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~ 177 (815)
-+.+-+.+..++++.|.+..+ .-+..++|++.++++.+..... ++ ++++...||..... ...++..| .+.++
T Consensus 108 Le~l~e~Qt~i~eLtGm~~aN--aSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~ 185 (939)
T TIGR00461 108 LEALLNFQTVVSDLTGLPVAN--ASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD 185 (939)
T ss_pred HHHHHHHHHHHHHHHCCChhh--hhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc
Confidence 344778999999999998876 7888899998888887754222 24 88999999997654 43566666 33333
Q ss_pred chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC
Q psy16512 178 VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM 257 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~ 257 (815)
.+ .+.. .. ++..+++.+| |..|.+.|+++|.+++| ++|.++++++-.......
T Consensus 186 ~~------~l~~-------~~--~~~~v~~q~P-n~~G~ied~~~i~~~~h-----------~~gal~~~~ad~~al~ll 238 (939)
T TIGR00461 186 CS------DIKK-------AV--DVFGCLLQYP-ATDGSILDYKQLIDALH-----------SHKSLVSVAADLMALTLL 238 (939)
T ss_pred HH------HHhh-------cC--CEEEEEEECC-CCCeEEecHHHHHHHHH-----------HcCCEEEEEechHHhCCc
Confidence 21 2222 11 3666666665 67799999999999999 889999997766655555
Q ss_pred CCCCCCCCcEEEEccccc-----cccCCcceEEEEecccccccCcccccCceEEEEecCC--cccc--cccCccccccCC
Q psy16512 258 LDLKQHQPDFISISFYKM-----FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANE--NFHI--KKDGLFEKFEDG 328 (815)
Q Consensus 258 ~dl~~~~~D~vv~S~~K~-----~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~--~~~~--~~~~~~~~~~~g 328 (815)
.+..++++|+++.+.+++ ||+| +.|++.+++++.+.+...+.|... +... .+.. ...+..-|++-+
T Consensus 239 ~~Pge~GaDi~vg~~q~fg~p~g~GGP-~aG~~a~~~~l~r~lPgrivG~s~----D~~G~~~~~l~LqtReqhIrRekA 313 (939)
T TIGR00461 239 TPPGHYGADIVLGSSQRFGVPMGYGGP-HAAFFAVKDEYNRKMPGRIVGVSK----DALGNTALRLALQTREQHIRRDKA 313 (939)
T ss_pred CCHHHcCCcEEeeCCCccCCCCCCCCC-ceeeeeecHhhHhhCCCCceeEEe----cCCCCccceeeccccccccccccc
Confidence 666788999997766653 3344 389999999888777655554321 1110 1111 112223456778
Q ss_pred CCChhHHHHHHHHH--HHHHhhhh----hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 329 TVNYLAIISLKYGF--DTMEKKRK----SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 329 t~~~~~~~al~~al--~~l~~~~~----~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
|.|+....++.+.. -++...|. .+ +++..++.++.+.|.+. |+++..+.. -..+.+++.
T Consensus 314 tSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~-------G~~~~~~~f-------F~~~~v~~~ 379 (939)
T TIGR00461 314 TSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEND-------PHELINKTW-------FDTLTVKVG 379 (939)
T ss_pred CcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc-------cceEEEEeC
Confidence 88876666654422 22333332 22 77888999999999886 788775421 234444442
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
..+ ..++.+.+.++||.++.. ..+.+++|++-++|+
T Consensus 380 ~~~-----~~~i~~~~~~~gi~l~~~---------------------------------------~~~~i~~s~~E~~t~ 415 (939)
T TIGR00461 380 NGI-----SSELLKAAEEFNINLRAV---------------------------------------DTTTVGIALDETTTK 415 (939)
T ss_pred CCC-----HHHHHHHHHHCCCeeeec---------------------------------------CCCEEEEEeecCCCH
Confidence 212 235888999999997631 026799999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 482 DDVKYFLSFLN 492 (815)
Q Consensus 482 edi~~lv~~L~ 492 (815)
+||+.|++++.
T Consensus 416 ~di~~l~~~~~ 426 (939)
T TIGR00461 416 ADVENLLKVFD 426 (939)
T ss_pred HHHHHHHHHhc
Confidence 99999999985
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-11 Score=120.19 Aligned_cols=299 Identities=11% Similarity=0.125 Sum_probs=174.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCCc---EEEe-cCCCcchhhHHHHhhccc-eEEcCc-
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEGS---FIYL-TDNHTSVLGMRELVKTNQ-IYSFSV- 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~gd---vv~~-~~~h~s~~~~~~~~~~~g-~v~~~~- 178 (815)
++.+...+.+-+|.+-....|.+|+|+..+..-++..+.- ..|+ ++++ .++| .++....-... ++...+
T Consensus 80 i~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeY---iGY~d~~l~~d~fVs~kP~ 156 (417)
T COG3977 80 IDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEY---IGYADAGLEEDLFVSAKPN 156 (417)
T ss_pred HHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhh---ccccccccCccceeeccCC
Confidence 5556666666666554444599999999998877776641 3444 5544 2333 22222211111 222222
Q ss_pred -----hhhh----cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 179 -----DDAR----NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 179 -----~~~~----~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
.+.+ |.+.+ .+.+.+.+|+++-|.||||.+..-+++.++.. .+++||+++++|.
T Consensus 157 iel~~~g~FKY~vDF~~l---------~i~e~~g~ic~SRPtNPTGNVlTdeE~~klda--------lA~~~giPliIDn 219 (417)
T COG3977 157 IELLPAGQFKYHVDFEHL---------HIGESTGAICVSRPTNPTGNVLTDEELAKLDA--------LARQHGIPLIIDN 219 (417)
T ss_pred cccccccceeeccCHHHc---------ccccccceEEecCCCCCCCCcccHHHHHHHHH--------HhhhcCCcEEEec
Confidence 2211 21221 23567999999999999999999888766544 2339999999999
Q ss_pred ccccCCCCCCCCC----CCCc-EEEEccccccccCCc-ceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 250 ATYCGSNMLDLKQ----HQPD-FISISFYKMFGYPTG-LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 250 a~~~g~~~~dl~~----~~~D-~vv~S~~K~~g~p~G-~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
|++.+...+.+++ |+.+ +.|.|++|..- |.- +|+++.++++++.+...- +..
T Consensus 220 AYg~PFP~iifsd~~~~w~~NiilC~SLSK~GL-PG~R~GIiIane~viqaitnmn---~ii------------------ 277 (417)
T COG3977 220 AYGVPFPGIIFSDATPLWNENIILCMSLSKLGL-PGSRCGIIIANEKVIQAITNMN---GII------------------ 277 (417)
T ss_pred ccCCCCCceecccccccCCCCEEEEeehhhcCC-CCcceeEEEccHHHHHHHHhcc---cee------------------
Confidence 9988765444443 3444 66789999766 632 899999998876553221 110
Q ss_pred cccCCCCChhHHHHHHHHHH--HHHhhhh-----hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 324 KFEDGTVNYLAIISLKYGFD--TMEKKRK-----SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~--~l~~~~~-----~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
.+-+|..- .++ +..+++ .+.++.. .+ .+.+.....++..|-+. .+.+..|++ .-+
T Consensus 278 sLap~~~G-~Ai--a~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-------~~~iHkpEG-------AIF 340 (417)
T COG3977 278 SLAPGRMG-PAI--AAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-------RCLIHKPEG-------AIF 340 (417)
T ss_pred eecCCCcc-HHH--HHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-------ceeeecCCc-------cee
Confidence 01111111 111 111111 1111111 11 34444444444445443 577777764 233
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+++.+.+.. ++..++++.|+++|+.+.+|..+-++..+.. -....++|+++
T Consensus 341 lWLWf~dLP---Itt~~LYq~LKa~Gvl~VPG~~FFpGl~~ew--------------------------pH~hqC~Rmn~ 391 (417)
T COG3977 341 LWLWFKDLP---ITTEELYQRLKARGVLMVPGHYFFPGLDKEW--------------------------PHTHQCMRMNY 391 (417)
T ss_pred ehhhhccCC---CCHHHHHHHHHhCeEEEecccccCCCCCCCC--------------------------CCccceEEEec
Confidence 444444432 4445799999999999999987766543210 11247899998
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy16512 476 GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~ 495 (815)
.. +++.|++-++.|.+-+
T Consensus 392 ~~--~~~~ie~Gva~lae~v 409 (417)
T COG3977 392 VP--EPEKIEKGVAILAEEV 409 (417)
T ss_pred CC--CHHHHHHHHHHHHHHH
Confidence 74 6788888888887654
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-11 Score=129.93 Aligned_cols=314 Identities=11% Similarity=0.079 Sum_probs=185.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eEEc--------
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IYSF-------- 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~-------- 176 (815)
+.++++.+++++|.+. +++++++|.|++++.... .++||.| +...|...... .....| .+.+
T Consensus 80 ~~~LE~~vAe~lG~e~----aV~v~sGTaAl~ll~~l~-v~pGd~V-p~n~~f~Tt~a--hI~~~Ga~fvDi~~d~a~~~ 151 (460)
T PRK13237 80 FYHLEETVQEYYGFKH----VVPTHQGRGAENLLSRIA-IKPGQYV-PGNMYFTTTRY--HQELNGGIFVDIIIDEAHDA 151 (460)
T ss_pred HHHHHHHHHHHHCCCe----EEEeCCHHHHHHHHHHhC-CCCcCEE-CCccchHhhHH--HHHhCCcEEEeeeccccccc
Confidence 8899999999999865 899999999999875444 4899965 44434332221 122333 3333
Q ss_pred ----CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccC---hHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 177 ----SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 177 ----~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
...+.+|++.++++|+ +...+++.++.+...+|.. |...| +++|.++|+ ++|+.||+|
T Consensus 152 ~~~~p~tgnlD~d~Le~~I~---~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~-----------~~Gl~Vi~D 217 (460)
T PRK13237 152 QSDHPFKGNVDLDKLQALID---EVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCD-----------KHGIKVFFD 217 (460)
T ss_pred ccCCCCCCCcCHHHHHHHhc---cccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHH-----------HcCCEEEEE
Confidence 1245678888877654 1122456778888888888 67764 577788888 999999999
Q ss_pred cccccCCCC-----------CCCC------CCCCcEEEEccccccccCCcceEEEEecc-cccccCcccccCceEEEEec
Q psy16512 249 AATYCGSNM-----------LDLK------QHQPDFISISFYKMFGYPTGLGALIVKQK-SAHVLNKTFYGGGTVKISMA 310 (815)
Q Consensus 249 ~a~~~g~~~-----------~dl~------~~~~D~vv~S~~K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~ 310 (815)
+|++++... .++. ....|.+++|++|.++.+.| |+++.+++ +.++++....-.
T Consensus 218 aAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~-------- 288 (460)
T PRK13237 218 ATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVY-------- 288 (460)
T ss_pred CcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhcccc--------
Confidence 999888321 1111 11479999999998886654 77777654 444443221000
Q ss_pred CCcccccccCccccc-cCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCC
Q psy16512 311 NENFHIKKDGLFEKF-EDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGE 388 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~-~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~ 388 (815)
+.| ..|....--+.|+..++...... .+ ++.....++|.+.|.+. |+.++.|.+
T Consensus 289 ------------eG~~tygg~~grd~~alAvgl~E~~~~--~y~~~ri~~~~~l~~~L~~~-------Gvpv~~p~g--- 344 (460)
T PRK13237 289 ------------EGMPSYGGMAGRDMEAMAIGIEESVQY--EYIEHRVGQVRYLGEKLLAA-------GVPIVEPVG--- 344 (460)
T ss_pred ------------CCCcCCCChhhhHHHHHHhHHHhhchH--HHHHHHHHHHHHHHHHHHHC-------CCceecCCC---
Confidence 001 11222222344554454432222 33 56666788999999886 777777654
Q ss_pred CCcccceEEEEE----ecCCCCccCHHHHHHhh-hcCCcEec-cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccc
Q psy16512 389 SKYQGNIVNFNL----LHKDGTYYGYSEVQNLA-NLKKIQLR-TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462 (815)
Q Consensus 389 ~~~~~~i~~f~~----~~~~~~~~~~~~v~~~l-~~~gI~v~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~ 462 (815)
|+-+.+.. ++.....+....+...| .+.||-.. -|++ .+|.+++ . ++..
T Consensus 345 ----gH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~g~~--------~~~~~~~-------~----~~~~-- 399 (460)
T PRK13237 345 ----GHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMERGIV--------SAGRDPK-------T----GENH-- 399 (460)
T ss_pred ----ceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEeecce--------ecccCCC-------C----CccC--
Confidence 44444542 33344444333344444 56666431 1221 0111110 0 0000
Q ss_pred cCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCccc
Q psy16512 463 IDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADFV 502 (815)
Q Consensus 463 ~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~~ 502 (815)
.-+-..+|+.+.-- =|.+.+|+.+++|..++.+.....
T Consensus 400 --~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~ 438 (460)
T PRK13237 400 --YPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHREDIR 438 (460)
T ss_pred --CCccceeeeccccccccHHHHHHHHHHHHHHHHhHhhcC
Confidence 00025799998742 167999999999999887766553
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-11 Score=126.10 Aligned_cols=309 Identities=13% Similarity=0.061 Sum_probs=180.3
Q ss_pred HHHHHHHHHhHcC----CC-CCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCc
Q psy16512 107 IDQMRTKILQYFN----TD-SDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g----~~-~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~ 178 (815)
+-++...+.++.+ .+ ..++.+++|+|.|.++..+++.+. ++|| |++...++++. .+..+..| .+|++-
T Consensus 102 ~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~A---L~s~~a~gv~~ipv~m 177 (472)
T KOG0634|consen 102 IPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSA---LQSMEALGVKIIPVKM 177 (472)
T ss_pred cHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHH---HHhccccCceEEeccc
Confidence 4556666666544 22 223579999999999999999999 8888 66666556554 44445556 777765
Q ss_pred h-hhhcchhhhhhhhhh--hhhcCCC-ccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 179 D-DARNMLNEFKESQEN--VENMRHS-NSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 179 ~-~~~~~~~~~~~l~~~--~~~~~~~-t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+ ..++++.+++.+..- .....++ ..+..++..+||||..++++. |.++|+ +|++++|.|..+
T Consensus 178 d~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LAr-----------KyDfLIVeDdpY 246 (472)
T KOG0634|consen 178 DQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLAR-----------KYDFLIVEDDPY 246 (472)
T ss_pred cCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHH-----------HcCEEEEecCcc
Confidence 3 367777777655310 0111233 458888999999999999875 778888 999999999765
Q ss_pred ccCCC--------------------------CCCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCc
Q psy16512 252 YCGSN--------------------------MLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGG 303 (815)
Q Consensus 252 ~~g~~--------------------------~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~ 303 (815)
+.=.. .++++..+.-+-.-||+|.++ | | +||+.+++.+++++-. ..+
T Consensus 247 y~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-P-GlRlG~it~~~~~l~ril~---~ae 321 (472)
T KOG0634|consen 247 YFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-P-GLRLGWITGNSLFLKRILD---LAE 321 (472)
T ss_pred ceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-C-cceeEEeecCHHHHHHHhh---hcc
Confidence 43110 111111122244559999999 7 6 8999999877654311 111
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR------KSFTNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~------~~~~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
... . .++-.....+.+.+....+.| .-.......+..+..+|.+.. +. ..
T Consensus 322 ~~t--------------------~-~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kyl--p~-~~ 377 (472)
T KOG0634|consen 322 VAT--------------------S-GPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYL--PK-SV 377 (472)
T ss_pred eee--------------------c-CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CC-Ce
Confidence 100 0 122222222222222222111 011223333444555554321 11 13
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecC---CCCccC--HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHK---DGTYYG--YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~---~~~~~~--~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++..|.. |.+++++++.. ....++ ...+...+.++||.+..|..+..
T Consensus 378 ~~~~~P~a-------GmFiwv~i~~~~~~~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v-------------------- 430 (472)
T KOG0634|consen 378 CEYHPPKA-------GMFIWVEIPYINFDTKKSINQIEEIIFIKAVKNGVKLVCGSWFMV-------------------- 430 (472)
T ss_pred eEEecCCc-------ceEEEEEecccccccccchHHHHHHHHHHHHHCCeEEecCceeEE--------------------
Confidence 66666654 88889988611 111122 12355667899999987764321
Q ss_pred CCccCCcccccCCCC-c-eEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 453 GHICGDDKDIIDGKP-T-GSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~-~-g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++.. . -++|+|+.++ ..|+++..++.+..++++
T Consensus 431 ----------~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 431 ----------DPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKE 466 (472)
T ss_pred ----------cCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHH
Confidence 11111 1 3899999876 456777777777776654
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.1e-10 Score=125.55 Aligned_cols=339 Identities=13% Similarity=0.120 Sum_probs=191.9
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEe-cC
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIF-TS 131 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~-t~ 131 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... ....+. ..++-+++++.+..+. ..+.++| ++
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~--~~~~~~----~~~lae~l~~~~~~~~~~~~~~~f~~~ 106 (412)
T TIGR02407 33 DGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSL--DMATEA----KREFLETFNEIILKPRGLDYKVQFPGP 106 (412)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceecc--ccCcHH----HHHHHHHHHHhccCccCCCceEEEeCC
Confidence 3456777543 2445688888888877632111111 111122 4456666666542221 1113666 48
Q ss_pred CchhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhcc------c-----eEEcCchhh-----hcchhhhhhhh
Q psy16512 132 GATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKTN------Q-----IYSFSVDDA-----RNMLNEFKESQ 192 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~~------g-----~v~~~~~~~-----~~~~~~~~~l~ 192 (815)
++++|+..++.....-.|. ||.....|.. ........... + .+.+...+. .+++.+++.+.
T Consensus 107 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~ 186 (412)
T TIGR02407 107 TGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLE 186 (412)
T ss_pred CchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHH
Confidence 9999998888766432343 6665554433 33333222111 1 111111110 11222333221
Q ss_pred hhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCC
Q psy16512 193 ENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQ 262 (815)
Q Consensus 193 ~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~ 262 (815)
..... +++.+|++..+.+..|...| +++|.++|+ ++|+++|+|+++. +|.. ..+...
T Consensus 187 --~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEV~tG~GRtG~~~a~~~~~ 253 (412)
T TIGR02407 187 --DSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCR-----------RHDILLIVDDIQAGCGRTGTFFSFEPAG 253 (412)
T ss_pred --hccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCccchhHHhcccC
Confidence 00001 34688889999999998654 445677777 9999999999875 3221 122234
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+|+++ +.|+++ +.| +|+++++++. +.+.+.. .....+.|..+.++..+
T Consensus 254 v~PDi~~--~~K~lg-~~G~pigav~~~~~~-~~~~~~~------------------------~~~T~~gnpl~~aaa~a 305 (412)
T TIGR02407 254 IEPDIVC--LSKSIS-GYGLPLALTLIKPEL-DVWKPGE------------------------HNGTFRGNNLAFVTATA 305 (412)
T ss_pred CCCCEEE--echhcc-CCccceeEEEEchhh-hccCCCc------------------------cCCCCCccHHHHHHHHH
Confidence 5689776 459988 545 8999998775 3332111 01111345566666667
Q ss_pred HHHH-HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 341 GFDT-MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 341 al~~-l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
+++. +.+ +...++.+++.+++.+.|+.+.... +.+.. . ....|.++.+.++.... ...+.+.+.+
T Consensus 306 ~l~~~i~~-~~l~~~~~~~g~~l~~~l~~l~~~~--~~~~~-~------vrg~Gl~~~l~l~~~~~----~~~~~~~~~~ 371 (412)
T TIGR02407 306 ALEYYWSD-DAFEKAVQRKSEIIQERLDRIVAEY--PELIK-Q------VRGRGLMQGIECGDGDL----AGKIAKAAFE 371 (412)
T ss_pred HHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHhhC--CCceE-e------eecceeEEEEEecChHH----HHHHHHHHHH
Confidence 7774 433 2223788888888888887642100 21111 1 12346777888864211 1247778889
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+||.+.... ...+.||+++.+..|++|+++++++|++.+.
T Consensus 372 ~Gv~v~~~~-------------------------------------~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 372 NGLIIETSG-------------------------------------PNDEVIKLLPPLTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred CCCEEeccC-------------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999986421 0126799999999999999999999999874
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-10 Score=127.50 Aligned_cols=325 Identities=14% Similarity=0.121 Sum_probs=190.8
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+--.+++.+++.+++....+ ...... ... ..++-++|++..+. + .+.|+++++
T Consensus 14 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~~~~~~-~~~----~~~la~~l~~~~~~--~--~v~f~~sGs 82 (382)
T PLN00144 14 GKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAH--VSNVYH-TIP----QVELAKRLVASSFA--D--RVFFCNSGT 82 (382)
T ss_pred CCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCC--cccccc-CHH----HHHHHHHHHhcCCC--C--eEEEeCCcH
Confidence 445666432 233457888888887764221 111111 111 44566666666543 3 399999999
Q ss_pred hhHHHHHhhhcc--C-------------CCcEEEecCCCcc-hhhHHHHhhccc----eEEcCchh----hhcchhhhhh
Q psy16512 135 SAIKTVSEYFEF--N-------------EGSFIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKE 190 (815)
Q Consensus 135 ~al~~~~~al~~--~-------------~gdvv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~ 190 (815)
+|++.++..... . +..+|.....|.. ............ +.+..++. .-+++.+++.
T Consensus 83 eA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 162 (382)
T PLN00144 83 EANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKL 162 (382)
T ss_pred HHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHh
Confidence 999888775431 1 1226665554433 323222211100 11111100 0123334332
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LDLK 261 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~dl~ 261 (815)
+. ..++++|++.-.+|+.|...+ +++|.++|+ +||+++|+|+++. ++.. . .+..
T Consensus 163 ~~------~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~-----------~~g~llI~DEv~tg~gr~g~~~~~~~~ 225 (382)
T PLN00144 163 IQ------KGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCD-----------EAGALLVFDEVQCGLGRTGYLWAHEAY 225 (382)
T ss_pred cC------CCCeEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCccchHhhhhhc
Confidence 21 235778888777888555543 556777887 9999999999865 2221 1 1233
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
...+| +.+++|.++ + | +|++++++++.+.+.+... ......+.+...++.
T Consensus 226 ~~~PD--i~t~sK~l~-~-G~pig~v~~~~~~~~~~~~~~~------------------------~~T~~~~pl~~aaa~ 277 (382)
T PLN00144 226 GVEPD--IMTLAKPLA-G-GLPIGAVLVTEKVASAINPGDH------------------------GSTFAGGPLVCNAAL 277 (382)
T ss_pred CCCCC--EEEeccccc-C-CcceEEEEEcHHHHhccCCCCC------------------------CCCCCCCHHHHHHHH
Confidence 45688 677899887 4 4 8999999888766532110 111245566777777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL 419 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~ 419 (815)
++++++.+. ...++++++.+++.+.|.++.. ..|.+.-+ ...|.++++.+. ... ..+.+.+.+
T Consensus 278 a~l~~i~~~-~~~~~~~~~g~~l~~~l~~~~~--~~~~~~~v--------rg~G~~~~l~l~-~~~-----~~~~~~~~~ 340 (382)
T PLN00144 278 AVLDKISKP-GFLASVAKKGEYLRELLRRKLG--GNPHVKEV--------RGVGLLVGIQLD-VPA-----GPLVDACRD 340 (382)
T ss_pred HHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHh--hCCCceee--------ecCceEEEEEec-Ccc-----HHHHHHHHH
Confidence 888888642 2237788888888777765410 01222111 124778888772 222 247788889
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+||.+.++. . ...||++++...++++++.+++.|.+.+.
T Consensus 341 ~Gv~i~~~~-------------------------------------~-~~~lrl~p~~~~~~~~i~~~~~~l~~~l~ 379 (382)
T PLN00144 341 SGLLVLTAG-------------------------------------K-GDVVRLVPPLVISEAELEQAVEILADCLP 379 (382)
T ss_pred CCeEEeecC-------------------------------------C-CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence 999987541 0 26899999987789999999999999874
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-10 Score=122.54 Aligned_cols=332 Identities=13% Similarity=0.114 Sum_probs=205.7
Q ss_pred ccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 58 HLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 58 ~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
+.++..|+|..+ -+--.+.+++++.++.......+.. + ..+...++-+.|.+..+ ..+. |+|++
T Consensus 38 D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~--~-----~~~~~~~la~~L~~~s~-~~d~--vff~N 107 (404)
T COG4992 38 DQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNL--F-----YNEPQAELAEKLVELSP-FADR--VFFCN 107 (404)
T ss_pred CCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccc--c-----CChHHHHHHHHHHhhCc-cccE--EEEcC
Confidence 345677888554 2334577888877765542211111 1 11115667777888776 4444 99999
Q ss_pred CchhhHHHHHhhhcc--C-CC--cEEEecCCCcc-hhhHHHHhh----ccceEEcCchh----hhcchhhhhhhhhhhhh
Q psy16512 132 GATSAIKTVSEYFEF--N-EG--SFIYLTDNHTS-VLGMRELVK----TNQIYSFSVDD----ARNMLNEFKESQENVEN 197 (815)
Q Consensus 132 g~t~al~~~~~al~~--~-~g--dvv~~~~~h~s-~~~~~~~~~----~~g~v~~~~~~----~~~~~~~~~~l~~~~~~ 197 (815)
++++|++.++..... . ++ .||....++.. .......-. +.++.|+-+.. .-|++++++ +
T Consensus 108 SGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~-------a 180 (404)
T COG4992 108 SGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEA-------A 180 (404)
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHH-------H
Confidence 999999999876642 1 33 37776655432 211111110 01111222211 123444444 4
Q ss_pred cCCCccEEEEecccCCCccccChHH----HHHHhhccccccccccCCCCeEEEEeccccc-CCC----CCCCCCCCCcEE
Q psy16512 198 MRHSNSLFVYPAESNFSGTKYPLSW----CNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSN----MLDLKQHQPDFI 268 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~~~~l~~----I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~----~~dl~~~~~D~v 268 (815)
++++|.+|++.-++-..|++.+-++ +.++|+ +||+++|+|+.|.. |-. ........||++
T Consensus 181 i~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd-----------~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~ 249 (404)
T COG4992 181 IDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCD-----------EHGALLILDEVQTGLGRTGKLFAYEHYGVEPDIL 249 (404)
T ss_pred hccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHH-----------HhCeEEEEeccccCCCccchHHHHHHhCCCCCEE
Confidence 4568999999999999999988554 566666 99999999999763 211 011112358886
Q ss_pred EEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 269 SISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 269 v~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
+. -|.+|+-.-+|++++++...+.+.+-..|.. . .-|.++.++..++++.+.+.
T Consensus 250 tl--aK~LgGG~PigA~la~~~~~~~~~~G~HgST----------------------f--GGNpLacAv~~a~l~~l~~e 303 (404)
T COG4992 250 TL--AKALGGGFPIGAMLATEEIASAFTPGDHGST----------------------F--GGNPLACAVALAVLEVLLEE 303 (404)
T ss_pred Ee--eccccCCccceeeEEchhhhhcCCCCcccCC----------------------C--CcCHHHHHHHHHHHHHHcch
Confidence 54 5877732238999998655544433221110 0 23567777777888887654
Q ss_pred hhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 349 RKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 349 ~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
.. ++.+++.+++.+.|+++.+.- |.++-+ ...|-++.+.+.... ...++.+.+.++|+.+-..
T Consensus 304 --~ll~~v~~~g~~~~~~L~~l~~~~--~~v~~v--------RG~GLmiGiel~~~~----~a~~~~~~~~~~gvL~~~a 367 (404)
T COG4992 304 --GLLENVREKGEYLLQRLRELKRRY--PLVKEV--------RGRGLMIGIELKEPY----RARDIVRALREEGVLVLPA 367 (404)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhhcC--Cceeee--------ecceeEEEEEecCcc----cHHHHHHHHHHCCeEEecC
Confidence 33 888999999999998873211 112211 345777777776532 1235889999999887532
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
. .+.||+...+-.++|+++..+++|++.+...
T Consensus 368 ~---------------------------------------~~ViR~~PpL~i~~eei~~~~~~l~~~l~~~ 399 (404)
T COG4992 368 G---------------------------------------PNVIRFLPPLVITEEEIDEALDALERALAAA 399 (404)
T ss_pred C---------------------------------------CCeEEecCCccCCHHHHHHHHHHHHHHHHHh
Confidence 1 3689999999999999999999999987543
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-10 Score=130.30 Aligned_cols=327 Identities=12% Similarity=0.096 Sum_probs=191.3
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+.+.+++.+++......... . .... ..++.++++++++. +. ++|+++++
T Consensus 38 G~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~-~~~~----~~~la~~l~~~~~~--~~--v~~~~sGs 106 (406)
T PRK12381 38 GKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNG--Y-TNEP----VLRLAKKLIDATFA--DR--VFFCNSGA 106 (406)
T ss_pred CCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCc--c-CCHH----HHHHHHHHHhhCCC--Ce--EEEcCCcH
Confidence 345666433 2334577888887777542111111 1 1122 56788888888764 33 99999999
Q ss_pred hhHHHHHhhhcc------CCC-c-EEEecCC-CcchhhHHHHhhccc----eEEcCch----hhhcchhhhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF------NEG-S-FIYLTDN-HTSVLGMRELVKTNQ----IYSFSVD----DARNMLNEFKESQENVEN 197 (815)
Q Consensus 135 ~al~~~~~al~~------~~g-d-vv~~~~~-h~s~~~~~~~~~~~g----~v~~~~~----~~~~~~~~~~~l~~~~~~ 197 (815)
+|+..++..... .++ . ++..... |.............. +.++.++ ...+.+.+++ .
T Consensus 107 eA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~ 179 (406)
T PRK12381 107 EANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASA-------L 179 (406)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHH-------h
Confidence 999998887531 123 3 6655544 444433332222110 1111110 0112333333 2
Q ss_pred cCCCccEEEEecccCCCcccc--C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCCCcE
Q psy16512 198 MRHSNSLFVYPAESNFSGTKY--P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQPDF 267 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~~~--~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~~D~ 267 (815)
+.+++++|+++ |.+++|-+. | +++|.++|+ +||+++|+|+++. +|.. .. ......+|+
T Consensus 180 l~~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi 247 (406)
T PRK12381 180 IDDQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCD-----------RHNALLIFDEVQTGVGRTGELYAYMHYGVTPDV 247 (406)
T ss_pred ccCCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEcchhhCCCCCcchhhhHhhCCCCCE
Confidence 33568888886 556666543 3 455677777 9999999999973 2211 11 111234776
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
.+++|.++ + | +|+++.++++++.+.+... ....+.+.....++.++++.+
T Consensus 248 --~t~sK~l~-g-G~~ig~~~~~~~~~~~~~~~~~------------------------~~t~~~~pl~~aaa~a~l~~l 299 (406)
T PRK12381 248 --LTTAKALG-G-GFPIGAMLTTEKCASVMTVGTH------------------------GTTYGGNPLASAVAGKVLELI 299 (406)
T ss_pred --EEehhhhh-C-CCceEEEEEcHHHHhhcCCCCC------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 58889887 3 5 8999998887765532110 011134666777777888776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
... ...++.+++.+++.+.|+++.. ..+.+.-+ ...+.++.+.+...... ....+.+.+.++||.+.
T Consensus 300 ~~~-~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~v--------rg~Gl~~~~~l~~~~~~--~~~~~~~~l~~~Gv~v~ 366 (406)
T PRK12381 300 NTP-EMLNGVKQRHDWFVERLNTINA--RYGLFSEI--------RGLGLLIGCVLNAEYAG--KAKQISQEAAKAGVMVL 366 (406)
T ss_pred hhc-cHHHHHHHHHHHHHHHHHHHHh--hCCCEEEE--------ecCeEEEEEEecCchhh--HHHHHHHHHHHCCcEEe
Confidence 532 2338888999999998887620 00111111 12356667766532110 12347778889999985
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
... .+.+|+++.+..|++|+++++++|++++.+
T Consensus 367 ~~g---------------------------------------~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~ 399 (406)
T PRK12381 367 IAG---------------------------------------PNVVRFAPALNISEEEITTGLDRFARACER 399 (406)
T ss_pred eCC---------------------------------------CCEEEEeCCccCCHHHHHHHHHHHHHHHHH
Confidence 310 258999999889999999999999987743
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-10 Score=127.57 Aligned_cols=337 Identities=15% Similarity=0.132 Sum_probs=199.1
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+ -+--.+.+.+++.+++...... +....... ..++-++|++++....+ .++|+++
T Consensus 72 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~---~~~~~~~~----~~~lAe~L~~~~p~~~~--~v~f~~S 142 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLH---SQELLDPL----RALLAKTLAALTPGKLK--YSFFCNS 142 (442)
T ss_pred CCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCc---ccccCCHH----HHHHHHHHHHhCCCCcC--EEEEeCC
Confidence 34567877543 3345588888888877642211 11111222 55677777777653333 3899999
Q ss_pred chhhHHHHHhhhcc---CCCc--EEEecCC-CcchhhHHHHhhc----cceEEcCchh----hhcchhhhhhhhhhhhhc
Q psy16512 133 ATSAIKTVSEYFEF---NEGS--FIYLTDN-HTSVLGMRELVKT----NQIYSFSVDD----ARNMLNEFKESQENVENM 198 (815)
Q Consensus 133 ~t~al~~~~~al~~---~~gd--vv~~~~~-h~s~~~~~~~~~~----~g~v~~~~~~----~~~~~~~~~~l~~~~~~~ 198 (815)
+++|+..++..... ..|. +|..... |............ .++.|..+.- .-+.+.+++.+.+.. ..
T Consensus 143 GsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~-~~ 221 (442)
T TIGR03372 143 GTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECK-KT 221 (442)
T ss_pred chHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHh-cC
Confidence 99999988875531 1243 6666654 3333332222111 0011111100 001223333332111 11
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC----CCCCCCCCcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM----LDLKQHQPDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~----~dl~~~~~D~vv 269 (815)
..+..+|++..+...-|...| ++++.++|+ ++|+++|+|+++. +|..- .......||+++
T Consensus 222 ~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~-----------~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt 290 (442)
T TIGR03372 222 GDDVAAIILEPIQGEGGVILPPEGYLPAVRALCD-----------EFGALLILDEVQTGMGRTGKMFACEHEGVQPDILC 290 (442)
T ss_pred CCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeecccCCCccccchhhhhcCCCCCeee
Confidence 245789999999988899998 888899998 9999999999984 33211 111123589866
Q ss_pred EccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHHHHHH
Q psy16512 270 ISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGFDTME 346 (815)
Q Consensus 270 ~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~l~ 346 (815)
+.|.+|+- .-+|++++++++.+.+...- ....+| -|..+.++..++++.+.
T Consensus 291 --~gK~lg~G~~Pigavv~~~~i~~~~~~~~------------------------~~~~~T~~gnp~~~Aaa~a~L~~i~ 344 (442)
T TIGR03372 291 --LAKALGGGVMPIGATIATEAVFSVLFDNP------------------------FLHTTTFGGNPLACAAALATINELL 344 (442)
T ss_pred --ehhhhcCCcccceEEEecHHHHHhhhccC------------------------ccccCCCCCCHHHHHHHHHHHHHHH
Confidence 78987731 11688888887765441100 001123 36677777778888886
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
+.+ -.++.+++-+++.+.|+++.. ..| .+.-+ ...|.++.+.+..... ...+.+.|.++||.+.
T Consensus 345 ~~~-l~~~~~~~G~~l~~~L~~l~~--~~~~~i~~v--------RG~Gl~~giel~~~~~----~~~i~~~l~~~Gvl~~ 409 (442)
T TIGR03372 345 EKN-LPAQAAIKGDFLLDGFQQLAA--EYPDLIIEA--------RGKGLLMAIEFRDNEI----GYAFAKELFQQNILVA 409 (442)
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHH--hCCCceEEE--------ecceEEEEEEeCChHH----HHHHHHHHHHCCcEEe
Confidence 542 237788888888888877521 002 11111 1237788888764311 1247777888999985
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
... .....+|+++....|++|+++++++|++.
T Consensus 410 ~~~-------------------------------------~~~~~lr~~Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 410 GTL-------------------------------------NNAKSIRIEPPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred ecC-------------------------------------CCCCEEEEECCcccCHHHHHHHHHHHHHh
Confidence 310 01268999999999999999999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-10 Score=129.61 Aligned_cols=340 Identities=14% Similarity=0.151 Sum_probs=199.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+....+ ...+. ..++.++|++++.-..+ .++|++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~--~~~~~----~~~la~~L~~~~~~~~~--~v~f~~SG 112 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGV--IYYES----ILKLAEELAEITPGGLD--CFFFSNSG 112 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc--cCCHH----HHHHHHHHHHhCCCCCC--EEEEeCcH
Confidence 34567775443 2255788888888775422222111 11222 56788888888742223 49999999
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecC-CCcchhhHHHHhhc-------cc-------eEEcCchh------------hhcc
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTD-NHTSVLGMRELVKT-------NQ-------IYSFSVDD------------ARNM 184 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~-~h~s~~~~~~~~~~-------~g-------~v~~~~~~------------~~~~ 184 (815)
++|+..++..... .+.++|.... .|.+.......... .. .+|..... ..+.
T Consensus 113 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (433)
T PRK08117 113 AEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL 192 (433)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHH
Confidence 9999988875431 2233555554 45444433222110 00 11111000 0122
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCC--C
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSN--M 257 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~--~ 257 (815)
+.+++.++. .....++.+|++..+....|.+.| +++|.++|+ +||+++|+|+++.. |.. .
T Consensus 193 ~~l~~~~~~--~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEv~tG~gr~G~~ 259 (433)
T PRK08117 193 RDLESLFKH--QVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICD-----------RHGILLIFDEVQTGFGRTGEW 259 (433)
T ss_pred HHHHHHHHh--ccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEecchhccCccccc
Confidence 222222210 001245789999999999999998 888899998 99999999999762 111 1
Q ss_pred CCCCC--CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 LDLKQ--HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 ~dl~~--~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
..... ..+|+ .+++|.++ . | +|+++.++++.+.+..... ....+.|..
T Consensus 260 ~~~~~~gv~pDi--~t~sK~lg-~-G~pigav~~~~~i~~~~~~~~~------------------------~~T~~~np~ 311 (433)
T PRK08117 260 FAAQTFGVVPDI--MTIAKGIA-S-GLPLSAVVASKELMEQWPLGSH------------------------GTTFGGNPV 311 (433)
T ss_pred hhHhhcCCCCCE--eehhhhcc-C-CCcceeEEEcHHHHhhccCCCC------------------------CCCCCcCHH
Confidence 11112 23665 68899888 3 4 7899998887654422110 001134667
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--ccCHH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT--YYGYS 411 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--~~~~~ 411 (815)
+.++..++++.+... ...++++++.+++.+.|.++.. ..+.+.- ....+.++.+.+...+.. .-...
T Consensus 312 ~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~~~~--------vrg~Gl~~gi~~~~~~~~~~~~~~~ 380 (433)
T PRK08117 312 ACAAALATLEVIKEE-KLLDNANEMGAYALERLEVLKE--KHPVIGD--------VRGIGLMIGIEIVDPDGEPDGDAVE 380 (433)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh--cCCceee--------eecCCcEEEEEEecCCCCcchHHHH
Confidence 777777888877543 2237788888888888877621 0011110 123356667777543211 11123
Q ss_pred HHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.+.+.+.++||.+.+. +...+.+|+++.+..|+++|++++++|
T Consensus 381 ~~~~~l~~~Gv~~~~~-------------------------------------g~~~~~lRl~p~~~~t~~~i~~~~~~l 423 (433)
T PRK08117 381 KILDKCLEKGLLFYLC-------------------------------------GNAGNVLRMIPPLTVTKEEIDEGLDIL 423 (433)
T ss_pred HHHHHHHHCCCEEeec-------------------------------------CCCCCEEEEeCCccCCHHHHHHHHHHH
Confidence 4667778899887531 001368999999999999999999999
Q ss_pred HHHHh
Q psy16512 492 NQYFL 496 (815)
Q Consensus 492 ~~~~~ 496 (815)
.+.+.
T Consensus 424 ~~~l~ 428 (433)
T PRK08117 424 DEALT 428 (433)
T ss_pred HHHHH
Confidence 98764
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-10 Score=126.71 Aligned_cols=340 Identities=14% Similarity=0.146 Sum_probs=202.9
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +--.+.+.+++.+++....... ....... ..++.++|++++....+. +.|+++
T Consensus 79 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~---~~~~~~~----~~~lae~L~~~~p~~~~~--v~f~~S 149 (459)
T PRK11522 79 TQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHS---QELLDPL----RAMLAKTLAALTPGKLKY--SFFCNS 149 (459)
T ss_pred CCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccc---cccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCC
Confidence 445677776442 3445788888888776422111 1111222 556677777776533333 999999
Q ss_pred chhhHHHHHhhhcc---CCCc--EEEecCCCcc-hhhHHHHhhccc----eEEcCchh----hhcchhhhhhhhhhhhhc
Q psy16512 133 ATSAIKTVSEYFEF---NEGS--FIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKESQENVENM 198 (815)
Q Consensus 133 ~t~al~~~~~al~~---~~gd--vv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~l~~~~~~~ 198 (815)
+++|+..++..... ++|. ||.....|.. ............ +.+..++. .-+.+.+++++.+.. ..
T Consensus 150 GsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~ 228 (459)
T PRK11522 150 GTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECK-KT 228 (459)
T ss_pred chHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhh-cc
Confidence 99999988875532 2233 6666544433 222222211110 11111100 012233333332111 11
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv 269 (815)
..++.+|++..+....|.+.| ++++.++|+ ++|+++|+|+++. +|.. ........||++
T Consensus 229 ~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~-----------~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDiv- 296 (459)
T PRK11522 229 GDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCD-----------EFGALLILDEVQTGMGRTGKMFACEHENVQPDIL- 296 (459)
T ss_pred CCcEEEEEEecccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEeccceecCCccchhhhhhccCCCCCEE-
Confidence 245789999999999999988 778888998 9999999999984 3211 111112358976
Q ss_pred EccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC--ChhHHHHHHHHHHHHH
Q psy16512 270 ISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV--NYLAIISLKYGFDTME 346 (815)
Q Consensus 270 ~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~al~~al~~l~ 346 (815)
++.|.+|+- .-+|+++++++..+.+...- ....+|. |..+.+++.++++.+.
T Consensus 297 -t~gK~lggG~~Pigav~~~~~i~~~~~~~~------------------------~~~~~T~~gnp~~~Aaala~L~~i~ 351 (459)
T PRK11522 297 -CLAKALGGGVMPIGATIATEEVFSVLFDNP------------------------FLHTTTFGGNPLACAAALATINVLL 351 (459)
T ss_pred -EechhhhCCCccceeEEEcHHHHHHhccCC------------------------cccCCCCCCCHHHHHHHHHHHHHHh
Confidence 668988731 11788888887765331100 0111233 6777888888888887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
+. ...++++++.+++.+.|+++.. ..| .+.-+ ...|.++.+.+..... ...+.+.|.++||.+.
T Consensus 352 ~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~~i~~V--------rG~Gl~~giel~~~~~----~~~i~~~l~~~Gvl~~ 416 (459)
T PRK11522 352 EQ-NLPAQAEQKGDYLLDGFRQLAR--EYPDLVQEA--------RGKGMLMAIEFVDNEI----GYNFASEMFRQRVLVA 416 (459)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHH--hCCCceeeE--------EeceeEEEEEecCchH----HHHHHHHHHHCCeEEE
Confidence 64 2338889999999999887620 012 11111 2247788888764321 1246777888999985
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
... .....+|+.+.+..|++|++.++++|.+.+.+
T Consensus 417 ~~~-------------------------------------~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~~ 451 (459)
T PRK11522 417 GTL-------------------------------------NNAKTIRIEPPLTLTIEQCEQVLKAARKALAA 451 (459)
T ss_pred ecC-------------------------------------CCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 320 01268999999999999999999999998754
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-09 Score=121.78 Aligned_cols=339 Identities=13% Similarity=0.076 Sum_probs=197.0
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.+.. ...... ..++-++|.+.+....+ .+.|++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~--~v~f~~sG 110 (443)
T PRK08360 39 EGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPI--YGFPVE----PLLLAEKLIEIAPGDNP--KVSFGLSG 110 (443)
T ss_pred CCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccc--ccCcHH----HHHHHHHHHHhCCCCCC--EEEEcCCH
Confidence 3456777543 3345578888888877642221111 111122 44566667777654333 39999999
Q ss_pred hhhHHHHHhhhccCCCc--EEEecCC-CcchhhHHHHhhc-----------cc--eEEcCchhh------------hcch
Q psy16512 134 TSAIKTVSEYFEFNEGS--FIYLTDN-HTSVLGMRELVKT-----------NQ--IYSFSVDDA------------RNML 185 (815)
Q Consensus 134 t~al~~~~~al~~~~gd--vv~~~~~-h~s~~~~~~~~~~-----------~g--~v~~~~~~~------------~~~~ 185 (815)
++|++.++.....-.|. |+..... |............ .+ +++...... .+.+
T Consensus 111 sEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (443)
T PRK08360 111 SDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVE 190 (443)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHH
Confidence 99998888755422333 5554433 3333222221110 01 111111000 0111
Q ss_pred hhhhhhhhhhhh-cCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--
Q psy16512 186 NEFKESQENVEN-MRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM-- 257 (815)
Q Consensus 186 ~~~~~l~~~~~~-~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~-- 257 (815)
.+++.+ ... ..+++++|++.-..|++|...| +++|.++|+ ++|+++|+|+++. +|...
T Consensus 191 ~~~~~l---~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~~g~gr~G~~ 256 (443)
T PRK08360 191 YIKEKF---EGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILD-----------EHGILLVVDEVQSGLGRTGKW 256 (443)
T ss_pred HHHHHH---HhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCccc
Confidence 122222 111 1256899999888899999887 555777777 9999999999875 32211
Q ss_pred --CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 --LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 --~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.......+|++ +++|.++ + | +|+++.++++.+.+.... .......+..
T Consensus 257 ~a~~~~~~~pDii--tlsK~l~-~-G~pigav~~~~~i~~~~~~~~------------------------~~~T~~~~p~ 308 (443)
T PRK08360 257 FAIEHFGVEPDII--TLGKPLG-G-GLPISATIGRAEIMDSLPPLA------------------------HAFTLSGNPV 308 (443)
T ss_pred hhhhhcCCCCCEE--Eeccccc-C-CceeEEEEEcHHHHhhhcCCC------------------------CCCCCCcCHH
Confidence 11112357876 5699998 4 5 899999888766553211 0111234555
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-CccC---
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-TYYG--- 409 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~~~~--- 409 (815)
...++.++++.+.+. ...++.+++.+++.+.|+++... .|.+.-+ ...|.++.+.+..... ...+
T Consensus 309 ~~aaa~a~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~v~~v--------rg~Gl~~gie~~~~~~~~~~~~~~ 377 (443)
T PRK08360 309 ASAAALAVIEEIEEK-NLLKRAEKLGNYTKKRLEEMKKK--HELIGDV--------RGIGLMIGVDLVKDRETKERAYEE 377 (443)
T ss_pred HHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHh--CCCeeee--------eccceEEEEEEecCCcccCccHHH
Confidence 677777788877654 22378888888888888765210 1222111 2346777777753211 0001
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
...+.+.+.++||.+.... ...+|+++.+..|++||+++++
T Consensus 378 ~~~~~~~l~~~Gi~~~~~~---------------------------------------~~~lr~~P~l~~t~~~id~~~~ 418 (443)
T PRK08360 378 AAKVVWRAWELGLIVTFFS---------------------------------------GNVLRIQPPLTIEKEVLDEGLD 418 (443)
T ss_pred HHHHHHHHHHCCeEEeecC---------------------------------------CCEEEEeCCCCCCHHHHHHHHH
Confidence 1246677788998875310 2679999999999999999999
Q ss_pred HHHHHHhhc
Q psy16512 490 FLNQYFLQQ 498 (815)
Q Consensus 490 ~L~~~~~~~ 498 (815)
++++.+..-
T Consensus 419 ~l~~~l~~~ 427 (443)
T PRK08360 419 ILEEAIEDV 427 (443)
T ss_pred HHHHHHHHH
Confidence 999988653
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-10 Score=121.08 Aligned_cols=263 Identities=13% Similarity=0.055 Sum_probs=175.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc---C-CC-c---EEEecCCCcchhhHHHHhhccc----eE
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF---N-EG-S---FIYLTDNHTSVLGMRELVKTNQ----IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~---~-~g-d---vv~~~~~h~s~~~~~~~~~~~g----~v 174 (815)
..++-..++.+|+++.+. .-.-|.|+|+++.++..+... + .| + ++.+...|.+ +.+++...+ .+
T Consensus 122 e~~~Vnm~~~L~~~~~~~-~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a---~eK~a~yf~v~l~~V 197 (491)
T KOG1383|consen 122 EAECVNMIANLFNAPSDS-CGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAA---FEKAARYFEVELREV 197 (491)
T ss_pred HHHHHHHHHHHhcCCccc-cCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHH---HHHHHhhEEEEEEee
Confidence 668889999999998664 336678999996665555431 1 22 1 4444434433 344444444 56
Q ss_pred EcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-CCeEEEEecccc
Q psy16512 175 SFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-SNCFVLLDAATY 252 (815)
Q Consensus 175 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-~gi~vivD~a~~ 252 (815)
++++. ..+|+....+ .++++|.+++.+.++.|+|.+-|+++|.++.. + +++++++|++.+
T Consensus 198 ~~~~~~~~~D~~k~~~-------~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~-----------e~w~ipiHvDa~~G 259 (491)
T KOG1383|consen 198 PLDEGDYRVDPGKVVR-------MIDENTIMLVGSLPNFPTGEIEDVEKLADLLL-----------EIWDIPIHVDACLG 259 (491)
T ss_pred eccccceEecHHHHHH-------HhccceEEEEEEcCCCCccchhhHHHHHHHHH-----------HHhCCceeecccCc
Confidence 77743 4566666554 55689999999999999999999999999998 5 999999998865
Q ss_pred cCCC--------CCCCCCCCCcEEEEccccccccCCcceEEEEeccccc--c--cCcccccCceEEEEecCCcccccccC
Q psy16512 253 CGSN--------MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH--V--LNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 253 ~g~~--------~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~--~--l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
.-.. ++|+..-++-.+..+.||....|.|+|+++.+.+-.. + +..-|.||.+...
T Consensus 260 gFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~------------- 326 (491)
T KOG1383|consen 260 GFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASP------------- 326 (491)
T ss_pred cccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCc-------------
Confidence 4333 3455555667888999996666999999888765431 1 1223334433111
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEE
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNF 398 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f 398 (815)
--.|+.+-..+++..+++-.+...|-.. +++.+.+..+++.++++ +++.+++. +.++|
T Consensus 327 ----TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i------~~i~i~gk----------p~vs~ 386 (491)
T KOG1383|consen 327 ----TLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENI------KGIKIVGK----------PLVSF 386 (491)
T ss_pred ----ccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcc------ccceecCC----------CcEEE
Confidence 1123444455555555554444443222 88899999999999998 68998865 44566
Q ss_pred EEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 399 NLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 399 ~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
...+... ++..++...|.++|..+..
T Consensus 387 ~~~~s~~--~~i~elsd~l~~~GW~lna 412 (491)
T KOG1383|consen 387 ILFGSND--VNIFELSDLLRKKGWILNA 412 (491)
T ss_pred EEccCCc--cchhhhhHHHHhcCcCccc
Confidence 6554333 5556789999999988754
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-13 Score=142.76 Aligned_cols=196 Identities=12% Similarity=0.111 Sum_probs=133.2
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
..+++.+++.+.. .++. .+..... ..+++++++++||.+. .+|++++|.|+.+++.++. ++++ +
T Consensus 7 ~~~~m~~a~~~a~----~gd~--~Yg~D~~----~~~l~~~i~~l~g~e~----a~f~~sGT~An~~al~~~~-~~~~~v 71 (290)
T PF01212_consen 7 PTPAMLEAMAAAN----VGDD--AYGEDPT----TARLEERIAELFGKEA----ALFVPSGTMANQLALRAHL-RPGESV 71 (290)
T ss_dssp S-HHEEHHHHHTT----SB-C--CTTSSHH----HHHHHHHHHHHHTSSE----EEEESSHHHHHHHHHHHHH-HTTEEE
T ss_pred CCHHHHHHHHccc----cCCc--ccCCChh----HHHHHHHHHHHcCCCE----EEEeCCCChHHHHHHHHHH-hcCCce
Confidence 4567777774322 1222 2444455 8899999999999754 6799999999999999999 8888 8
Q ss_pred EEecCCCcchhhHHHHhhccc--eEEcC-ch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccChHHHHHH
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ--IYSFS-VD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYPLSWCNTV 226 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g--~v~~~-~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~l~~I~~l 226 (815)
|+....|.............| .+++. .+ +.++++++++++..... ..+++++|++++++|.. |.++++++|.++
T Consensus 72 i~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~-h~~~~~~v~le~t~~~~GG~~~s~~el~ai 150 (290)
T PF01212_consen 72 ICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA-HHPQPAVVSLENTTELAGGTVYSLEELRAI 150 (290)
T ss_dssp EEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG-TSGGEEEEEEESSBTTTTSB---HHHHHHH
T ss_pred eccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccc-cCCCccEEEEEecCcCCCCeeCCHHHHHHH
Confidence 888888876655333333344 44443 23 68899999887653222 33568999999998875 889998887776
Q ss_pred hhccccccccccCCCCeEEEEecccc------cCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 227 HRNHVFKKHFKCSRSNCFVLLDAATY------CGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~gi~vivD~a~~------~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
++ +|+++|+.|++|++-. .+..+.++. ..+|.+.+|++|.+|.| +-++|+.++++++.
T Consensus 151 ~~--------~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~-~Gavl~~~~~~i~~ 214 (290)
T PF01212_consen 151 SE--------LAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAP-GGAVLAGNKEFIAK 214 (290)
T ss_dssp HH--------HHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SS-SEEEEEESHHHHHH
T ss_pred HH--------HHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccc-cceEEEechHHHHH
Confidence 66 5559999999998832 232222232 46899999999999956 45788888886543
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-09 Score=121.74 Aligned_cols=340 Identities=11% Similarity=0.026 Sum_probs=194.6
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCC
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g 132 (815)
++..|+|..+ -+.-.+.+.+++.+++....+... ....... ..++-++|++++... .+ .++|+++
T Consensus 31 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~--~~~~~~~----~~~la~~l~~~~p~~~~~--~v~f~~s 102 (420)
T TIGR00700 31 DGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCF--MVTPYEG----YVALAEKLNRIAPGSGPK--KSVFFNS 102 (420)
T ss_pred CCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccc--cccCChH----HHHHHHHHHHhCCCCCCC--EEEEeCC
Confidence 3456777543 234557888888887764221111 1011111 445666677766421 23 4999999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhc-----cc---------eEEcCch---------h--hhcc
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKT-----NQ---------IYSFSVD---------D--ARNM 184 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~-----~g---------~v~~~~~---------~--~~~~ 184 (815)
+++|++.++.....-.|. ||.....|.. .......... .+ .++.... . ..++
T Consensus 103 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (420)
T TIGR00700 103 GAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGEL 182 (420)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHH
Confidence 999998887755422333 6655554433 3333322111 11 1111100 0 0011
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M 257 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~ 257 (815)
+.+++.+. .+...++..+|++..+...+|...| +++|.++|+ +||+++|+|+++. ++.. .
T Consensus 183 ~~~~~~~~--~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~-----------~~gillI~DEV~tg~gr~g~~ 249 (420)
T TIGR00700 183 AAARAIFV--IDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCR-----------EHGIVFIADEVQTGFARTGAM 249 (420)
T ss_pred HHHHHHHH--hhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCcccchh
Confidence 22222110 0112346889999999989999887 666888888 9999999998864 2211 1
Q ss_pred C--CCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 L--DLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 ~--dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
. +.....+|++ +++|.++ + | +|++++++++.+.+.+... ....+.|.+
T Consensus 250 ~a~~~~~~~pDi~--~lsK~l~-~-G~pig~v~~~~~i~~~~~~~~~------------------------~~T~~~~pl 301 (420)
T TIGR00700 250 FACEHEGPEPDLI--TTAKSLA-D-GLPLSGVTGRAEIMDAPAPGGL------------------------GGTYAGNPL 301 (420)
T ss_pred HHHhhcCCCCCEE--Eeecccc-C-CcceEEEEecHHHHhhcCCCCc------------------------CCCCCcCHH
Confidence 1 1112357865 4899888 4 4 8999999887765532110 011134566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---ccCH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---YYGY 410 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---~~~~ 410 (815)
+.+++.++++.+.+. ...++..++.+++.+.|+++.. ..|.+.-+. ..|.++.+.+.+.... ....
T Consensus 302 ~~aaa~a~l~~l~~~-~~~~~~~~~g~~l~~~L~~l~~--~~~~~~~vr--------g~G~~~~i~~~~~~~~~~~~~~~ 370 (420)
T TIGR00700 302 ACAAALAVLAIIESE-GLIERARQIGRLVTDRLTTLKA--VDPRIGDVR--------GLGAMIAVELVDPGTTEPDAGLA 370 (420)
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh--hCCCEEEee--------ccceEEEEEEecCCCCCccHHHH
Confidence 677777778776543 1227777777778777766521 013332222 2367777777432110 0012
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.+.++||.+.++..+ .+++|+++....++++++++++.
T Consensus 371 ~~l~~~~~~~Gv~i~p~~~f-------------------------------------~~~lRl~p~l~~~~~~l~~~~~~ 413 (420)
T TIGR00700 371 ERIATAAHAAGLLLLTCGMF-------------------------------------GNIIRFLPPLTIGDELLSEGLDI 413 (420)
T ss_pred HHHHHHHHHCCeEEeccCCC-------------------------------------CCEEEEECCCCcCHHHHHHHHHH
Confidence 23555667899998764211 26899999876789999999999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
|.+++.
T Consensus 414 l~~~l~ 419 (420)
T TIGR00700 414 LCAILA 419 (420)
T ss_pred HHHHhh
Confidence 998764
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.5e-10 Score=124.44 Aligned_cols=331 Identities=11% Similarity=0.057 Sum_probs=185.2
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +..++.+.+++.+++.... +. ...... ..+++++|++++... + .++|++|
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~----~~-~~~~~~----~~~lae~l~~~~~~~-~--~v~~~~s 112 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGT----SY-GAPTEA----EILLAKEIISRVPSV-E--MVRFVNS 112 (423)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----cC-CCCCHH----HHHHHHHHHHhCCcc-c--EEEEeCC
Confidence 345677776532 3456888888888776421 10 111122 668889999988643 3 3999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-------------------eEEcCchhhhcchhhhhhh
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-------------------IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-------------------~v~~~~~~~~~~~~~~~~l 191 (815)
+++|+..++..... ...+ ||.....|.............+ .+.+.. .+++.+++++
T Consensus 113 GseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~i 189 (423)
T TIGR00713 113 GTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY---NDLEALEEVF 189 (423)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCC---CCHHHHHHHH
Confidence 99999988875432 1223 7776655544322111100000 011110 1344444433
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQH 263 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~~ 263 (815)
+ ...+++++|++....+.+|.+.| +++|.++|+ ++|+++|+|+++..-.. .......
T Consensus 190 ~----~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~r~g~~~~~~~~~~ 254 (423)
T TIGR00713 190 E----EYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTE-----------EYGSLLIFDEVMTGFRVALGGAQEYFGV 254 (423)
T ss_pred H----HcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH-----------HhCCEEEEEccccccccCcchhHHHhCC
Confidence 2 11246788888644444899888 466777887 99999999999742111 0111123
Q ss_pred CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
.+|++ +++|.++ . | +|+++.++++++.+.+.. .. ........+..+..++.++
T Consensus 255 ~pDi~--t~sK~l~-~-G~pig~v~~~~~i~~~~~~~~---~~------------------~~~~T~~~~~~~~aaa~a~ 309 (423)
T TIGR00713 255 EPDLT--TLGKIIG-G-GLPVGAFGGRREIMERLAPEG---PV------------------YQAGTLSGNPLAMAAGLAT 309 (423)
T ss_pred Ccchh--hhhhhhc-C-CCceeeeeEHHHHHHhhCcCC---Ce------------------eeccCCCCCHHHHHHHHHH
Confidence 46754 7999888 3 5 799999988876654210 00 0011123566777777788
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC------ccC---HHH
Q psy16512 342 FDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT------YYG---YSE 412 (815)
Q Consensus 342 l~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~------~~~---~~~ 412 (815)
++.+.+.+ ..++.+++.+++.+.|.++.... +...-. ...+.++.+.+...... ..+ ...
T Consensus 310 l~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v--------~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 378 (423)
T TIGR00713 310 LKLLDEEG-VYTELDELAKRLAEGLSEVLEDT--GIPHTV--------NRVGSMFSLFFTEEEVTNYADAKKSDTELFAK 378 (423)
T ss_pred HHHHhccc-HHHHHHHHHHHHHHHHHHHHHhc--CCCeEE--------EeeccEEEEEEecCCCCChhhhhcccHHHHHH
Confidence 88776532 12455555555555544321000 111111 11256667665422110 001 123
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.+..+. .+.+|+++. .++++++.++++|.
T Consensus 379 ~~~~l~~~Gv~v~~~~---------------------------------------~~~~~l~~~--~t~~~i~~~~~~l~ 417 (423)
T TIGR00713 379 FFHEMLDKGVFLPPSQ---------------------------------------FEACFLSAA--HTEEDIENTIEAAE 417 (423)
T ss_pred HHHHHHHCCeEEecCC---------------------------------------ccceeeECC--CCHHHHHHHHHHHH
Confidence 5666777999875321 135788875 58999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+++.
T Consensus 418 ~~l~ 421 (423)
T TIGR00713 418 EVFA 421 (423)
T ss_pred HHHh
Confidence 8774
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-09 Score=121.38 Aligned_cols=353 Identities=11% Similarity=0.105 Sum_probs=194.8
Q ss_pred cccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHH
Q psy16512 42 IKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115 (815)
Q Consensus 42 v~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la 115 (815)
+...-|.++... ++..|+|..+ -+--.+.+.+++.+++....+.... ...... ..++-++++
T Consensus 25 ~~~~~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~--~~~~~~----~~~lae~l~ 92 (425)
T PRK09264 25 FDKAKGSWLYDE------DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGL--DMHTTA----KREFLETFE 92 (425)
T ss_pred EEeeecCEEEeC------CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhccccccc--ccCcHH----HHHHHHHHH
Confidence 344455554433 3456777543 2445688888888877642111111 101112 445666666
Q ss_pred hHcCCCC-CceeEEe-cCCchhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhh----c--cc-------eEEcC
Q psy16512 116 QYFNTDS-DHYSVIF-TSGATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVK----T--NQ-------IYSFS 177 (815)
Q Consensus 116 ~~~g~~~-~~~~iv~-t~g~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~----~--~g-------~v~~~ 177 (815)
+.+..+. ..+.++| ++++++|++.++.....-.|. ||.....|.. ......... + .+ .+|..
T Consensus 93 ~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~ 172 (425)
T PRK09264 93 ETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYD 172 (425)
T ss_pred HhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCC
Confidence 6543221 1113666 479999998887765422343 6665544333 322222211 0 11 12221
Q ss_pred ch---hhhcchhhhhhhhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 178 VD---DARNMLNEFKESQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 178 ~~---~~~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
.. ...+++.+++.+.+ .... +++.+|++..+....|...+ +++|.++|+ +||+++|+|+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DE 239 (425)
T PRK09264 173 GYFGGDVDTLAYLEKLLED--SSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCR-----------KHDILLIVDD 239 (425)
T ss_pred CccccchhHHHHHHHHHHh--ccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHH-----------HcCcEEEEec
Confidence 10 00123333433320 0011 34788999988888887653 666778888 9999999999
Q ss_pred ccc-cCC---C-CCCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 250 ATY-CGS---N-MLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 250 a~~-~g~---~-~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
++. +|. . ..+.....+|++++ .|.++ +.| +|++++++++ ..+.+...
T Consensus 240 V~tG~GrtG~~~~~~~~~v~PDi~t~--~K~l~-~~G~pigav~~~~~i-~~~~~~~~---------------------- 293 (425)
T PRK09264 240 IQAGCGRTGTFFSFERAGITPDIVTL--SKSIS-GYGLPMALVLIKPEL-DVWKPGEH---------------------- 293 (425)
T ss_pred hhhCCccccHHHHHhhcCCCCCEEEe--ccccC-CCccceEEEEEchhh-hccCCCcc----------------------
Confidence 975 221 1 11222346897655 69888 545 6999998775 22211100
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
....+.|.++.++..++++.+.......++++++.+++.+.|+++.. ..|.+ +.. ....+.++.+.+..
T Consensus 294 --~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~--~~~~~-~~~------vrg~Gl~~~i~l~~ 362 (425)
T PRK09264 294 --NGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAA--KYPGL-GAE------VRGRGMMQGIDFGD 362 (425)
T ss_pred --CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--hCCCc-eec------ceecccEEEEEecC
Confidence 00112344555565566632222212238888888889888876520 01222 111 12236777777753
Q ss_pred CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
.. ....+.+.+.++||.+.+... ....||+++.+..|++
T Consensus 363 ~~----~~~~l~~~~~~~Gv~~~~~~~-------------------------------------~~~~lr~~p~l~~t~~ 401 (425)
T PRK09264 363 GE----LAGKIAAEAFENGLIIETSGP-------------------------------------EDEVVKLLPPLTIDEE 401 (425)
T ss_pred hH----HHHHHHHHHHHCCCEEeccCC-------------------------------------CCCEEEEeCCCCCCHH
Confidence 21 122477788889998864210 0267999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
||++++++|.+.+.+
T Consensus 402 ei~~~~~~l~~~l~~ 416 (425)
T PRK09264 402 ELEEGLDILEEAVAE 416 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.8e-10 Score=124.44 Aligned_cols=345 Identities=15% Similarity=0.077 Sum_probs=196.8
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +.-.+.+.+++.+++....+.... ....+. ..++-++|++++....+ .+.|++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~--~~~~~~----~~~la~~l~~~~p~~~~--~v~f~~sG 115 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAF--QMGHPK----AFELANRIAEIAPGGLN--HVFFTNSG 115 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccC--CcCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 44567776432 455688888888777642221111 111122 45677777777642223 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhc------cc-------eEEcCch-h----------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKT------NQ-------IYSFSVD-D---------- 180 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~------~g-------~v~~~~~-~---------- 180 (815)
++|++.++..... .++. ||.....| ............ .+ .+|.... .
T Consensus 116 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 195 (442)
T PRK13360 116 SESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPE 195 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHH
Confidence 9999888775431 1232 66555443 322222211110 01 1221110 0
Q ss_pred --hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-cc
Q psy16512 181 --ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YC 253 (815)
Q Consensus 181 --~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~ 253 (815)
....+.+++++. ....++..+|++..+....|.+.| +++|.++|+ ++|+++|+|+++ ++
T Consensus 196 ~~~~~~~~le~~l~---~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~-----------~~g~llI~DEv~tG~ 261 (442)
T PRK13360 196 HGAELADELERLVT---LHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICD-----------KHGILLIFDEVITGF 261 (442)
T ss_pred HHHHHHHHHHHHHH---hcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCC
Confidence 001122333221 111245789999999999999999 888999999 999999999998 45
Q ss_pred CCC--C--CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSN--M--LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~--~--~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
|.. . .......+|++ ++.|.+++- .-+|.+++++++.+.+......+.. + .... ..
T Consensus 262 GrtG~~~a~~~~gv~PDiv--t~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~---------~-------~~~~-T~ 322 (442)
T PRK13360 262 GRLGAPFAAQYFGVTPDLL--TCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIE---------F-------FHGY-TY 322 (442)
T ss_pred CCCccchhhhhcCCCCcee--eeeeccccCccceEEEEEcHHHHHHhhcCCccccc---------c-------ccCC-CC
Confidence 431 1 11122357876 668988621 0177888888776544210000000 0 0001 11
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-c
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-Y 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~ 407 (815)
+.|.++++++.++++.+.+.+ ..++..++.+++.+.|+++.. .+.+.-+ ...|.+..+.+...... .
T Consensus 323 ~g~pl~~aaa~a~L~~l~~~~-l~~~~~~~g~~l~~~l~~l~~---~~~v~~v--------rG~Gl~~~~~l~~~~~~~~ 390 (442)
T PRK13360 323 SGHPLACAAALATLDLYEREG-LLTRAARLAPYWEDALHSLRD---APHVIDI--------RNLGLVGAVELAPRDGKPG 390 (442)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhc---CCCeeee--------eccceEEEEEEecCCCCcc
Confidence 346677888888888887642 338888888889888877620 1222111 12244555555422111 1
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
-....+.+.+.++||.+..+ .+.+|+++.+..|++||+++
T Consensus 391 ~~~~~~~~~l~~~Gvl~~~~----------------------------------------~~~lr~~Ppl~~t~~eid~~ 430 (442)
T PRK13360 391 KRAYEVFLKCFEKGLMIRYT----------------------------------------GDILALSPPLIIEEAQIDEL 430 (442)
T ss_pred hhHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCccCHHHHHHH
Confidence 11234666777889988531 15699999999999999999
Q ss_pred HHHHHHHHhh
Q psy16512 488 LSFLNQYFLQ 497 (815)
Q Consensus 488 v~~L~~~~~~ 497 (815)
+++|++.+.+
T Consensus 431 ~~~l~~~l~~ 440 (442)
T PRK13360 431 FDILAQALKE 440 (442)
T ss_pred HHHHHHHHHH
Confidence 9999998753
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-09 Score=116.85 Aligned_cols=356 Identities=16% Similarity=0.135 Sum_probs=210.5
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~l 114 (815)
.++...|-++..+ ++..|||..+ .+--.+.+++++.+++.... +.+......+. ..++-++|
T Consensus 41 ~~~ra~G~~l~Dv------dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~--h~~~~~~~~e~----~v~~ae~L 108 (447)
T COG0160 41 VIVRAEGAYLYDV------DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN--HTHTRDLYYEP----YVELAEKL 108 (447)
T ss_pred eEEecccCEEEeC------CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh--cccCCcccchh----HHHHHHHH
Confidence 3445556554443 4567777665 23455888998888776432 12222211122 45566666
Q ss_pred HhHcCCC-CCceeEEecCCchhhHHHHHhhhccCCC--cEEEecCC-CcchhhHHHHhhccc--------------eEEc
Q psy16512 115 LQYFNTD-SDHYSVIFTSGATSAIKTVSEYFEFNEG--SFIYLTDN-HTSVLGMRELVKTNQ--------------IYSF 176 (815)
Q Consensus 115 a~~~g~~-~~~~~iv~t~g~t~al~~~~~al~~~~g--dvv~~~~~-h~s~~~~~~~~~~~g--------------~v~~ 176 (815)
.+++..+ .. .++|++++++|++.++......-| .+|..... |........+-.... .+|.
T Consensus 109 ~~~~p~~~~~--~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Py 186 (447)
T COG0160 109 TALAPGSGLK--KVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPY 186 (447)
T ss_pred HHhCCcccCC--eEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecC
Confidence 6666543 22 389999999999999876654333 36666554 444443333322111 1121
Q ss_pred Cch------------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH----HHHHHhhccccccccccCC
Q psy16512 177 SVD------------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS----WCNTVHRNHVFKKHFKCSR 240 (815)
Q Consensus 177 ~~~------------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~----~I~~l~~~~~~~~~~~~~~ 240 (815)
... .....+.++.++... .....+..++++..++...|.+.|.+ ++.++|+ +
T Consensus 187 p~~yr~p~~~~~~~~~~~~~~~~e~~i~~~-~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~-----------~ 254 (447)
T COG0160 187 PNPYRCPFGIGGEECGDDALEYIERALFDL-EVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCR-----------E 254 (447)
T ss_pred CccccCcccCchhhhhHHHHHHHHHHHHhh-cCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHH-----------H
Confidence 110 011112222222100 01123478999999999999998744 4666676 9
Q ss_pred CCeEEEEecccccCC---CCCCCCCC--CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccc
Q psy16512 241 SNCFVLLDAATYCGS---NMLDLKQH--QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 241 ~gi~vivD~a~~~g~---~~~dl~~~--~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
||+++|+|++|..-. .-+.++.+ .||++++ .|.+|+-.-+|.++.++++.+ ..+-..++
T Consensus 255 ~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~--aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~------------- 318 (447)
T COG0160 255 HGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTL--AKSLGGGLPLSAVVGRAEIMD-WPPGGHGG------------- 318 (447)
T ss_pred cCCEEEEeccccCCCccccchhhhhcCCCCCEEEe--cccccCCCceeEEeccHHhcc-cCCcccCC-------------
Confidence 999999999976321 12233333 4898765 597774112899999988764 21211110
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
+ ..-|..+.++..+.|+.+.+. .-.++..++-+++.+.|.++. ..+..++. ....|-+
T Consensus 319 ---------T--f~GNpva~Aaa~AvL~vie~e-~L~~~a~~~G~~l~~~L~~l~-----~~~~~Igd-----VRG~Glm 376 (447)
T COG0160 319 ---------T--FGGNPVACAAALAVLDVIEEE-NLLERAAELGEYLRDRLEELQ-----EKHPLIGD-----VRGLGLM 376 (447)
T ss_pred ---------C--CCcCHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHH-----hhcCceec-----ccccceE
Confidence 1 123556666666777766654 222888999999999998773 12223332 2345778
Q ss_pred EEEEEecCCC----CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEE
Q psy16512 396 VNFNLLHKDG----TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSI 471 (815)
Q Consensus 396 ~~f~~~~~~~----~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i 471 (815)
+.+.+..... ..-....+.+.+.++|+.+.+. |...++|
T Consensus 377 ~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~-------------------------------------G~~~nvi 419 (447)
T COG0160 377 IGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTC-------------------------------------GPHGNVL 419 (447)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEecc-------------------------------------CCCCcEE
Confidence 8888764321 1111345778888999876532 1224899
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 472 RISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 472 Rvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||...+--+++++|.+++.|.+.+.+
T Consensus 420 Ri~PPL~is~e~~d~~l~il~~al~~ 445 (447)
T COG0160 420 RILPPLTISDEELDEGLDILEEALKE 445 (447)
T ss_pred EEeCCcccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-09 Score=122.55 Aligned_cols=347 Identities=15% Similarity=0.147 Sum_probs=200.9
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-CCCCceeEEecC
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-TDSDHYSVIFTS 131 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-~~~~~~~iv~t~ 131 (815)
.++..|+|..+ -+--.+.+.+++.+++....+.... ....... ..++.++|.+++. .+.+ .+.|++
T Consensus 86 ~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~-~~~~~~~----~~~lae~L~~~~~~~~~~--~v~f~~ 158 (504)
T PLN02760 86 INGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSF-WNRTTKP----SLDLAKELLEMFTARKMG--KVFFTN 158 (504)
T ss_pred CCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecc-cccCcHH----HHHHHHHHHhhcCCCCCC--EEEEeC
Confidence 34567777443 3344578888888877643221110 0111122 4566677777653 2223 389999
Q ss_pred CchhhHHHHHhhhcc------CCC--cEEEec-CCCcchhhHHHHhhc------cc-----eEEcCchh-----------
Q psy16512 132 GATSAIKTVSEYFEF------NEG--SFIYLT-DNHTSVLGMRELVKT------NQ-----IYSFSVDD----------- 180 (815)
Q Consensus 132 g~t~al~~~~~al~~------~~g--dvv~~~-~~h~s~~~~~~~~~~------~g-----~v~~~~~~----------- 180 (815)
++++|+..++..... .++ +||... ..|.+......+... .+ +..++...
T Consensus 159 SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 238 (504)
T PLN02760 159 SGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETE 238 (504)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcH
Confidence 999999988886630 233 355555 345554433322211 11 11111000
Q ss_pred ----hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-
Q psy16512 181 ----ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT- 251 (815)
Q Consensus 181 ----~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~- 251 (815)
....+.+++.+ ......+..+|++..+....|.+.| +++|.++|+ ++|+++|+|+++
T Consensus 239 ~~~~~~~~~~le~~l---~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~-----------~~g~lLI~DEV~T 304 (504)
T PLN02760 239 EEFSTRLADNLENLI---LKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLK-----------KYDILFIADEVIC 304 (504)
T ss_pred HHHHHHHHHHHHHHH---HhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEecchhh
Confidence 00011222222 1111235788999889888899988 888999999 999999999998
Q ss_pred ccCCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 252 YCGSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 252 ~~g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
++|..- .+.-...||+ .++.|.+|+-. -+|++++++++.+.+.......+. ......
T Consensus 305 GfGRtG~~~a~e~~gv~PDi--vtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~----------------~~h~~T 366 (504)
T PLN02760 305 AFGRLGTMFGCDKYNIKPDL--VSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGS----------------FAHGFT 366 (504)
T ss_pred CCcccchhhHHHhcCCCCcE--EEecccccCCccccceEeecHHHHhhhhcccccccC----------------cccCCC
Confidence 454321 1111234886 45579887311 278888888877655321000000 000111
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG- 405 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~- 405 (815)
. +-|..++++..++++.+.+. ...++++++.++|.+.|+++. ..|.+.-+ ...|.++.+.+.+...
T Consensus 367 ~-~gnPl~~Aaala~Le~i~~~-~l~~~~~~~g~~l~~~L~~l~---~~~~v~~v--------rG~Gl~~gie~~~~~~~ 433 (504)
T PLN02760 367 Y-SGHPVSCAVALEALKIYKER-NIPEHVNKIAPRFQDGIKAFS---GSPIIGEI--------RGTGLILGTEFVDNKSP 433 (504)
T ss_pred C-CCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHh---cCCCeeeE--------EeCceEEEEEEecCCcc
Confidence 1 23667777777888888754 223889999999999888761 11222111 2346777877754221
Q ss_pred -CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 406 -TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 406 -~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+... ...+.+.+.++||.+.+. ...+|+++.+..
T Consensus 434 ~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~~lrl~Ppl~i 473 (504)
T PLN02760 434 NDPFPAEWGVGAYFGAECKKRGMLVRVA----------------------------------------GDNIMMSPPLII 473 (504)
T ss_pred cccccchhHHHHHHHHHHHhCCcEEEec----------------------------------------CCEEEEECCCCC
Confidence 1110 223666778899987541 146899999889
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy16512 480 NWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~~ 497 (815)
|++||++++++|++.+.+
T Consensus 474 t~eeid~~~~~l~~al~~ 491 (504)
T PLN02760 474 TPEEVDELISIYGKALKA 491 (504)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=120.84 Aligned_cols=343 Identities=10% Similarity=0.054 Sum_probs=196.2
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... ...... ..++.++|++......+ .+.|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~--~v~f~~SG 109 (422)
T PRK05630 38 DGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFG--GLTHEP----AIKLTRKLLNLTDNGLD--HVFYSDSG 109 (422)
T ss_pred CCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccC--CcCCHH----HHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 4456777543 2344578888888877642211111 011122 45666777777643223 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCC-CcchhhHHHHhhcc------------c--eEEcCchhhhcchhhhhh
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDN-HTSVLGMRELVKTN------------Q--IYSFSVDDARNMLNEFKE 190 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~-h~s~~~~~~~~~~~------------g--~v~~~~~~~~~~~~~~~~ 190 (815)
++|++.++..... .++. +|..... |............. + .+|.......+.......
T Consensus 110 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 189 (422)
T PRK05630 110 SVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEY 189 (422)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHH
Confidence 9998888775431 1233 6665544 33332222211100 0 111111000011111111
Q ss_pred hhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC----CCC
Q psy16512 191 SQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM----LDL 260 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~----~dl 260 (815)
+..++..+..++.+|++.-. ....|...| +++|.++|+ ++|+++|+|+++. +|..- ...
T Consensus 190 ~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~-----------~~g~llI~DEv~tG~GrtG~~~a~~~ 258 (422)
T PRK05630 190 LRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCD-----------KHDILLIADEIATGFGRTGELFATLA 258 (422)
T ss_pred HHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHH-----------HcCCEEEEecceeCCCcCchhhHHHh
Confidence 12222223356788888874 666787665 445677777 9999999999873 22110 111
Q ss_pred CCCCCcEEEEcccccccc--CCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGY--PTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~--p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
....||++ ++.|.+++ ++ +|++++++++.+.+.... +.+. + ........|..++.+.
T Consensus 259 ~gv~PDi~--t~gK~l~gG~~p-~~av~~~~~i~~~~~~~~-~~~~---------~--------~h~~T~~g~Pla~aaa 317 (422)
T PRK05630 259 AGVTPDIM--CVGKALTGGFMS-FAATLCTDKVAQLISTPN-GGGA---------L--------MHGPTFMANPLACAVA 317 (422)
T ss_pred cCCCCCee--eeechhhcCccc-cceeeccHHHHHHHhccC-CCCc---------c--------ccCCCCcCCHHHHHHH
Confidence 23358887 56898753 22 688888888765542110 0000 0 0001113566777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
.++++.+.+. ...+++.++.+++.+.|+.+.. .|.+.-+ ...|.++.+.+.+... ...+.+.+.
T Consensus 318 ~aaL~~l~~~-~~~~~~~~~g~~l~~~L~~l~~---~~~v~~v--------Rg~Gl~~~ie~~~~~~----~~~~~~~~~ 381 (422)
T PRK05630 318 HASLEIIETG-MWRKQVKRIEAELIAGLSPLAH---LPGVADV--------RVLGAIGVVEMEQPVD----MEEATQAAV 381 (422)
T ss_pred HHHHHHHHhC-cHHHHHHHHHHHHHHHHHHhhc---CCCeeee--------eccccEEEEEECCccc----HHHHHHHHH
Confidence 7888888654 2237888888888887776510 1222211 2347888888864311 234777888
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
++|+.++.. .+.+|+.+.+-.|++|+++++++|++.+.++
T Consensus 382 ~~Gl~~~~~----------------------------------------g~~l~~~PpL~it~~~i~~~~~~l~~al~~~ 421 (422)
T PRK05630 382 DHGVWLRPF----------------------------------------GRLVYVMPPYITTSEQIAQICAALAAAVKAK 421 (422)
T ss_pred HCCeEEEec----------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHhcc
Confidence 999988531 1579999999999999999999999988665
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=125.46 Aligned_cols=304 Identities=14% Similarity=0.100 Sum_probs=196.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--c----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--V---- 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~---- 178 (815)
+.++++..|+.||++.. .+.++|+|.|+..+++++. .+|| |++.+.+|-|+....-+++... ++... +
T Consensus 72 i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi 147 (557)
T COG1982 72 IKEAQELAARVFGADHT---YFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGI 147 (557)
T ss_pred HHHHHHHHHHHhCCCce---EEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccc
Confidence 88999999999999764 7888999999999999999 9999 8899999999887766666665 33222 2
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-
Q psy16512 179 DDARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN- 256 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~- 256 (815)
-+.++.+.+.+++. + .+.. ++++++++ +..|..+++++|.+.++ ..++|+.+|.+|.+...
T Consensus 148 ~ggI~~~~~~~~l~--~---~~~~~k~~vitnp-TYdGv~~n~~~i~~~~~-----------~~~a~v~~deah~~~~~~ 210 (557)
T COG1982 148 IGGIPLETFKEALL--A---HPDAEKLAVITNP-TYDGVCYNLRKIVELLH-----------HYGAWVLYDEAHPAHFDF 210 (557)
T ss_pred cCCCCHHHHHHHHH--h---ChhhheeEEEecC-ccceEeecHHHHHHHHh-----------hcCceEEhhhcCcccccc
Confidence 23456666665442 1 1223 77777765 56799999999999999 88999999998765321
Q ss_pred ----CCCCCCCCCcEEEEccccccccCCcceEEEEecc-ccc--ccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 257 ----MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK-SAH--VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 257 ----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~-~~~--~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
+..-...+.|+++-|.||.+++.+-..++.+++. .++ ++... -..+.+++
T Consensus 211 ~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea-----------------------~~~h~STS 267 (557)
T COG1982 211 SPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEA-----------------------LMMHQSTS 267 (557)
T ss_pred cccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHH-----------------------HHHHccCC
Confidence 1111125789999999999996655677777763 211 11100 01244667
Q ss_pred CChhHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc-------------
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSF-----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY------------- 391 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~-----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~------------- 391 (815)
|+++.++++..|-.+....|... +.....++.+.+....+ +++.++.+.....+..
T Consensus 268 PsY~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~whgf~~~~~~~~~ 341 (557)
T COG1982 268 PSYPLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEI------GFFPVLQPEKLDPPTGWHGFEDYADDQYF 341 (557)
T ss_pred chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc------CCeeeccccccCCccccccccccccccee
Confidence 88888888877554544444332 56677777777777777 4677776542000000
Q ss_pred -ccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceE
Q psy16512 392 -QGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGS 470 (815)
Q Consensus 392 -~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~ 470 (815)
.+--+.+..+ ...+....+.+.|.++||...- |++.. ..
T Consensus 342 lDP~Klti~tp---~~Gipg~~v~~~L~e~gii~e~-----------------------------~~d~~--------~l 381 (557)
T COG1982 342 LDPTKLTITTP---EFGIPGAIVAKYLREHGIIPEE-----------------------------TGDYS--------NL 381 (557)
T ss_pred ccccEEEEecC---CCCCcHHHHHHHHHHcCCeeee-----------------------------cCCce--------ee
Confidence 1112223322 1123444688888888776531 22211 34
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 471 IRISYGHASNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 471 iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
+=++.+.-.+..+++.|+++++. +.+..|+
T Consensus 382 ll~~~~~gk~~~lv~~L~~f~r~-~d~d~~l 411 (557)
T COG1982 382 LLFSPGIGKWQTLVDRLLEFKRR-YDDDAPL 411 (557)
T ss_pred EEeeeccchHHHHHHHHHHHHHh-hhccchH
Confidence 44555444567888888888875 3444443
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-09 Score=120.35 Aligned_cols=342 Identities=12% Similarity=0.085 Sum_probs=195.5
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+ .......... ..++-+++.+++.... ...++|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~--~~~~~~~~~~----~~~la~~l~~~~p~~~-~~~~~f~~sG 110 (421)
T PRK09792 38 EGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTH--TAYQIVPYES----YVTLAEKINALAPVSG-QAKTAFFTTG 110 (421)
T ss_pred CCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccC--cccCccCCHH----HHHHHHHHHHhCCCCC-CceEEEeCCh
Confidence 44567775432 34567888888777764221 1111111111 3455566666654211 1248999999
Q ss_pred hhhHHHHHhhhccCCCc--EEEecCC-CcchhhHHHHhhc-----cc---------eEEcCchh-h----hcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEFNEGS--FIYLTDN-HTSVLGMRELVKT-----NQ---------IYSFSVDD-A----RNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~~~gd--vv~~~~~-h~s~~~~~~~~~~-----~g---------~v~~~~~~-~----~~~~~~~~~l 191 (815)
++|++.++.....-.|. ||..... |............ .+ .+++..+. . .+.+.+++.+
T Consensus 111 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~ 190 (421)
T PRK09792 111 AEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLF 190 (421)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHH
Confidence 99998887765422343 6655544 4333333222111 11 11221110 0 1112333222
Q ss_pred hhhhhh-cCCCccEEEEecccCCCcccc-C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCCCC-
Q psy16512 192 QENVEN-MRHSNSLFVYPAESNFSGTKY-P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDLKQ- 262 (815)
Q Consensus 192 ~~~~~~-~~~~t~lv~i~~~~n~tG~~~-~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl~~- 262 (815)
. +. ..++..+|+++.+++++|... | +++|.++|+ ++|+++|+|+++. +|.. ......
T Consensus 191 ~---~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEv~tg~gr~G~~~a~~~~ 256 (421)
T PRK09792 191 K---SDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCD-----------EHGIVMIADEVQSGFARTGKLFAMDHY 256 (421)
T ss_pred H---hccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCCCCchhHHHhc
Confidence 1 11 124578999998999999876 6 556777777 9999999998855 2221 111222
Q ss_pred -CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 263 -HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 263 -~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
..+|+ .+++|.+++-.-+|++++++++.+.+..... ......|..+.++..+.
T Consensus 257 ~~~pDi--~t~gK~l~~G~pigav~~~~~i~~~~~~~~~------------------------~~T~~gnpl~~aaa~a~ 310 (421)
T PRK09792 257 ADKPDL--MTMAKSLAGGMPLSGVVGNANIMDAPAPGGL------------------------GGTYAGNPLAVAAAHAV 310 (421)
T ss_pred CCCCcE--EEeehhhcCCCceEEEEEcHHHHhccCCCCc------------------------CCCCCCCHHHHHHHHHH
Confidence 25784 6779988821128999998887665532110 01113455667777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---ccCHHHHHHhhh
Q psy16512 342 FDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---YYGYSEVQNLAN 418 (815)
Q Consensus 342 l~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---~~~~~~v~~~l~ 418 (815)
++++.+. ...++++++.+++.+.|+.+.. ..|.+ .. ....|.++.+.+.+.+.. ......+.+.+.
T Consensus 311 l~~l~~~-~~~~~~~~~g~~l~~~l~~l~~--~~p~v--~~------vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~ 379 (421)
T PRK09792 311 LNIIDKE-SLCERANQLGQRLKNTLIDAKE--SVPAI--AA------VRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRAL 379 (421)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHHHHHHHH--hCCCc--ce------ecccceEEEEEecCCccCCcchHHHHHHHHHHH
Confidence 8877653 2237777888888887776521 00221 11 133478888888643211 011344667778
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++||.+... +...+.||+.+.+..+++++++++++|.+.+.
T Consensus 380 ~~Gv~i~~~-------------------------------------g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 380 AQGLLLLTC-------------------------------------GAYGNVIRFLYPLTIPDAQFDAAMKILQDALS 420 (421)
T ss_pred HCCcEEeec-------------------------------------CCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence 899988421 01137899999988899999999999999875
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-09 Score=117.55 Aligned_cols=339 Identities=14% Similarity=0.120 Sum_probs=194.4
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCC
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g 132 (815)
++..|+|..+ -+--.+.+.+++.+++.... +.......... ..++-+++++++... .+ .++|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~--~~~~~~~~~~~----~~~la~~l~~~~p~~~~~--~~~f~~s 109 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT--HTAYQIVPYAS----YVTLAERINALAPIDGPA--KTAFFTT 109 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc--cccccccCChH----HHHHHHHHHHhCCCCCCc--eEEEeCC
Confidence 4456777543 23455778888877776421 11111001111 345556677776431 23 3899999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCc-chhhHHHHhhc-----cc-------eEEcC-chh------hhcchhhhhh
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHT-SVLGMRELVKT-----NQ-------IYSFS-VDD------ARNMLNEFKE 190 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~-s~~~~~~~~~~-----~g-------~v~~~-~~~------~~~~~~~~~~ 190 (815)
+|+|++.++.....-.|. ||.....|. ........... .+ ...+. ++. ..+++.+++.
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 189 (421)
T PRK06777 110 GAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERL 189 (421)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHH
Confidence 999998887755422343 665554433 33333322111 00 11111 000 0112223322
Q ss_pred hhhhhhh-cCCCccEEEEecccCCCccc-cC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCCC-
Q psy16512 191 SQENVEN-MRHSNSLFVYPAESNFSGTK-YP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDLK- 261 (815)
Q Consensus 191 l~~~~~~-~~~~t~lv~i~~~~n~tG~~-~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl~- 261 (815)
+. .. ..++..+|++..+.+..|.. .| +++|.++|+ ++|+++|+|+++. +|.. .....
T Consensus 190 ~~---~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEv~tg~gr~g~~~~~~~ 255 (421)
T PRK06777 190 FK---ADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCD-----------EHGILLIADEVQTGFARTGKLFAMEY 255 (421)
T ss_pred HH---hccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCccCCchhhhhh
Confidence 21 11 12457889998888888864 56 556777777 9999999999865 2211 11112
Q ss_pred -CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 -QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 -~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
...+|++ +++|.++ + | +|+++.++++.+.+.+... ......|.....++
T Consensus 256 ~~~~pDiv--~~sK~l~-~-G~pigav~~~~~i~~~~~~~~~------------------------~~T~~~~p~~~aaa 307 (421)
T PRK06777 256 YDVKPDLI--TMAKSLG-G-GMPISAVVGRAEVMDAPAPGGL------------------------GGTYAGNPLAVAAA 307 (421)
T ss_pred cCCCCCEE--eeehhhc-C-CCceEEEEEcHHHHhccCCCCC------------------------CCCCCcCHHHHHHH
Confidence 2247865 6899888 3 4 8999999887665532210 01113466777788
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CC-ccC-HHHHHH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GT-YYG-YSEVQN 415 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~-~~~-~~~v~~ 415 (815)
.++++.+.+. ...++.+++.+++.+.|+++.. ..|.+.-+. ..|.++.+.+.... .. ... ...+.+
T Consensus 308 ~a~L~~~~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~i~~vr--------g~G~~~~i~~~~~~~~~~~~~~~~~l~~ 376 (421)
T PRK06777 308 LAVLDVIAEE-KLCQRALILGAHLVEVLEKAKA--SCPAIVDIR--------ARGSMVAVEFNDPQTGKPSPEFTRQYQR 376 (421)
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHH--hCCCeEEec--------CceEEEEEEEecCccCCccHHHHHHHHH
Confidence 8888877652 2238888889999998887621 013333332 23677776665321 11 000 123445
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+.++||.+.++.. ..+++|+++.+..+++++++++++|++++
T Consensus 377 ~~~~~Gv~i~~~~~-------------------------------------~g~~lr~~ppl~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 377 QALEEGLLLLSCGV-------------------------------------HGNVIRFLYPLTIPDAQFSKALNILTRLL 419 (421)
T ss_pred HHHhCCeEEeecCC-------------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 56779999875421 02689999988889999999999999876
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 420 ~ 420 (421)
T PRK06777 420 A 420 (421)
T ss_pred h
Confidence 4
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.3e-09 Score=116.79 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=197.2
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..+. ....+. ..++.++|++++..... ..|.|++++
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~-~~v~f~~SG 112 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPA--YMYHEP----LVRLAKKLCELAPGDFE-KRVTFGLSG 112 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCCC-CEEEECCch
Confidence 3456777533 2334578888887777642221111 011122 55677778887743211 149999999
Q ss_pred hhhHHHHHhhhccCCC--cEEEecCC-CcchhhHHHHhhc-------c-----ce--EEcCchhh-----hcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEFNEG--SFIYLTDN-HTSVLGMRELVKT-------N-----QI--YSFSVDDA-----RNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~~~g--dvv~~~~~-h~s~~~~~~~~~~-------~-----g~--v~~~~~~~-----~~~~~~~~~l 191 (815)
++|++.++.....-.| .||..... |............ . +. ++...... .+.+..+..+
T Consensus 113 seA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (445)
T PRK08593 113 SDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYL 192 (445)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHH
Confidence 9999988875432223 36655544 4433333222210 0 11 22111000 0001111111
Q ss_pred hhhhh----hc-CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-ccCCCC----
Q psy16512 192 QENVE----NM-RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCGSNM---- 257 (815)
Q Consensus 192 ~~~~~----~~-~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g~~~---- 257 (815)
.+++. .. .+++.+|++..+....|.+.| +++|.++|+ ++|+++|+|+++ ++|..-
T Consensus 193 ~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~-----------~~g~llI~DEv~tg~GrtG~~~a 261 (445)
T PRK08593 193 APLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCR-----------EHGILFAVDDIQQGLGRTGKWSS 261 (445)
T ss_pred HHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcCchHHH
Confidence 11111 11 246889999999998899877 777888888 999999999996 343211
Q ss_pred CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 258 LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 258 ~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
...-...+|++ ++.|.+++-.-+|+++.++++.+.+.... ..+ ....|..+.++
T Consensus 262 ~~~~gv~pDi~--t~gK~l~~G~p~gav~~~~~i~~~~~~~~-----------------------~~~-T~~~~pl~~aa 315 (445)
T PRK08593 262 ISHFNITPDLM--SFGKSLAGGMPMSAIVGRKEIMESLEAPA-----------------------HLF-TTGANPVSCAA 315 (445)
T ss_pred HHhcCCCCCEe--eecccccCCcccEEEEEcHHHHhhhccCC-----------------------CCC-CCCCCHHHHHH
Confidence 01112357865 56897772111789999988776553110 001 12345567777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHH
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEV 413 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v 413 (815)
..++++.+.+. ...++.+++.+++.+.|+++.. ..|.+.-+ ...|.++.+.+..... .......+
T Consensus 316 a~a~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~v~~v--------rG~Gl~~gi~l~~~~~~~~~~~~~~~~~ 384 (445)
T PRK08593 316 ALATIDMIEDE-SLLQRSAEKGEYARKRFDQWVS--KYNFVGDV--------RGYGLSIGIDIVSDKKLKTRDNEAALKI 384 (445)
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh--cCCcEEEE--------eccceEEEEEEecCCCcCCCcHHHHHHH
Confidence 77888887654 2237888888888888876521 01222211 2235666666643211 00012346
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+.++||.+.... .+.+|+++.+..|++||+++++++++
T Consensus 385 ~~~~~~~Gv~~~~~~---------------------------------------~~~lr~~p~l~~t~~~id~~~~~l~~ 425 (445)
T PRK08593 385 CNYCFEHGVVIIAVA---------------------------------------GNVLRFQPPLVITYEQLDTALNTIEQ 425 (445)
T ss_pred HHHHHHCCeEEeccC---------------------------------------CCEEEEECCCccCHHHHHHHHHHHHH
Confidence 677788999874310 25799999999999999999999999
Q ss_pred HHhhc
Q psy16512 494 YFLQQ 498 (815)
Q Consensus 494 ~~~~~ 498 (815)
.+.+-
T Consensus 426 ~l~~~ 430 (445)
T PRK08593 426 AFTAL 430 (445)
T ss_pred HHHHH
Confidence 87553
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-08 Score=114.14 Aligned_cols=344 Identities=11% Similarity=0.028 Sum_probs=195.1
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+ -+--.+.+.+++.+++.... +........+. ..++-+++++.+.....+ .++|+++
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~----~~~la~~l~~~~p~~~~~-~v~f~~s 125 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT--HTCFMVTPYEG----YVAVAEQLNRLTPGDHEK-RSALFNS 125 (443)
T ss_pred CCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc--CccccccCCHH----HHHHHHHHHHhCCCCCCC-EEEEeCC
Confidence 34566777644 33455788888877775421 11111011122 456667777776432111 4899999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcchh-hHHHHhhc-----cc---------eEEcCc--hhh----hc-chhhh
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTSVL-GMRELVKT-----NQ---------IYSFSV--DDA----RN-MLNEF 188 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s~~-~~~~~~~~-----~g---------~v~~~~--~~~----~~-~~~~~ 188 (815)
+++|+..++..... ++..+|.....|.... ........ .+ .++... ... .+ .+...
T Consensus 126 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (443)
T PRK06058 126 GAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAA 205 (443)
T ss_pred cHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHH
Confidence 99999988873321 3333666665544332 22221110 00 111100 000 00 01111
Q ss_pred hhhhhhhhhc-CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--
Q psy16512 189 KESQENVENM-RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L-- 258 (815)
Q Consensus 189 ~~l~~~~~~~-~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~-- 258 (815)
+.+..+.+.+ .+++.+|++..++...|.+.| +++|.++|+ +||+++|+|+++. +|..- .
T Consensus 206 ~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~-----------~~gillI~DEV~tGfgRtG~~fa~ 274 (443)
T PRK06058 206 RAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCR-----------ENGVVFIADEVQTGFARTGAWFAC 274 (443)
T ss_pred HHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcChhhhHH
Confidence 1111122222 245788888877766677765 666788888 9999999999865 32110 1
Q ss_pred CCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
..-...+|++++ .|.++ . | +|++++++++.+.+.+... ......|..+.+
T Consensus 275 ~~~gv~PDiv~~--gK~l~-~-G~Pi~av~~~~~i~~~~~~~~~------------------------~~T~~gnpl~~a 326 (443)
T PRK06058 275 EHEGIVPDLITT--AKGIA-G-GLPLSAVTGRAEIMDAPHPGGL------------------------GGTYGGNPVACA 326 (443)
T ss_pred HhcCCCCCEEEE--ccccc-C-CCccEEEEEcHHHHhhccCCCC------------------------CCCCCCCHHHHH
Confidence 111235898877 49877 2 4 8999999887665532210 011135667777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC---HHHH
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG---YSEV 413 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~---~~~v 413 (815)
++.++++.+.+. .-.++..++.+++.+.|+++... .+.+.-+ ...|.++.+.+.......-+ ...+
T Consensus 327 aa~a~L~~~~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~i~~v--------rg~G~~~~i~~~~~~~~~~~~~~~~~l 395 (443)
T PRK06058 327 AALAAIETIEED-DLVARARQIEALMTDRLRALAAE--DDRIGDV--------RGRGAMIAIELVKPGTTEPDAELTKAL 395 (443)
T ss_pred HHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhh--CCcEEee--------eccceEEEEEEecCCCCCCcHHHHHHH
Confidence 777888877654 12288888889999988876210 0222112 23477777777532110001 2235
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+.++||.+.++.. ..++||+.+.+..|++||++++++|++
T Consensus 396 ~~~~~~~Gv~~~~~~~-------------------------------------~~~~lr~~Ppl~~t~~~i~~~~~~l~~ 438 (443)
T PRK06058 396 AAAAHAAGVIVLTCGT-------------------------------------YGNVIRLLPPLVIGDELLREGLDVLEA 438 (443)
T ss_pred HHHHHHCCeEEeccCC-------------------------------------CCCEEEEECCCccCHHHHHHHHHHHHH
Confidence 5666789999865311 026899999988999999999999999
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 439 ~l~ 441 (443)
T PRK06058 439 ALA 441 (443)
T ss_pred HHH
Confidence 874
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-09 Score=120.89 Aligned_cols=344 Identities=14% Similarity=0.088 Sum_probs=195.6
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.... ....+. ..++.++|++++....+ .+.|++++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~--~v~f~~sG 118 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAF--QMGHPL----AFELAERLAELAPGGLD--HVFFTNSG 118 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 34567776432 345577888887776542211111 111122 45677777777743223 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCc-chhhHHHHhh------ccc-------eEEcCc---h---------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHT-SVLGMRELVK------TNQ-------IYSFSV---D--------- 179 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~-s~~~~~~~~~------~~g-------~v~~~~---~--------- 179 (815)
++|++.++..... +++. +|.....|. .......... ..+ .++... .
T Consensus 119 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (445)
T PRK09221 119 SESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPE 198 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHH
Confidence 9999888765431 1222 665554433 2222211111 001 111110 0
Q ss_pred -hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 180 -DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 180 -~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
.....+.+++.+. ....++..+|++..+....|.+.| +++|.++|+ ++|+++|+|+++. +
T Consensus 199 ~~~~~~~~l~~~i~---~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~-----------~~g~llI~DEV~tG~ 264 (445)
T PRK09221 199 HGAELADDLERLVA---LHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICD-----------KHGILLIFDEVITGF 264 (445)
T ss_pred HHHHHHHHHHHHHH---hcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeehhhCC
Confidence 0000122222221 111245789999999999999998 888999999 8999999999974 4
Q ss_pred CCC--C--CCCCCCCCcEEEEcccccccc--CCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 254 GSN--M--LDLKQHQPDFISISFYKMFGY--PTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 254 g~~--~--~dl~~~~~D~vv~S~~K~~g~--p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
|.. . .+.....+|++ ++.|.+++ .+ +|++++++++.+.+.... ... ..+ ......
T Consensus 265 GRtG~~~~~~~~gv~PDi~--~~gK~l~gG~~P-i~av~~~~~i~~~~~~~~--~~~-------~~~-------~~~~T~ 325 (445)
T PRK09221 265 GRLGAAFAAERFGVTPDII--TFAKGLTNGAIP-MGAVIASDEIYDAFMQGP--EYA-------IEF-------FHGYTY 325 (445)
T ss_pred CcCchhhHHHhcCCCCCEE--EeccccccCccc-ceeeEEcHHHHHhhccCc--ccc-------ccc-------ccccCC
Confidence 421 1 11122357875 55687652 22 688888887765542100 000 000 001111
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-C
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-T 406 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~ 406 (815)
+.|..+++++.++++.+.+. ...++..++.+++.+.|+++. +.|.+.-+ ...|-+..+.+..... .
T Consensus 326 -~~~pl~~aaa~a~L~~i~~~-~l~~~~~~~g~~l~~~l~~l~---~~~~v~~v--------rg~Gl~~~v~~~~~~~~~ 392 (445)
T PRK09221 326 -SAHPVACAAGLATLDIYREE-DLFERAAELAPYFEDAVHSLK---GLPHVIDI--------RNIGLVAGIELAPRPGAP 392 (445)
T ss_pred -CcCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhhc---cCCCEEEE--------ecCceEEEEEEecccccc
Confidence 24556677777888887654 223888999999999888762 11222111 1235556666643211 1
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
......+.+.+.++||.++.+ ...+|+++.+..|++||++
T Consensus 393 ~~~~~~~~~~~~~~Gv~~~~~----------------------------------------~~~lr~~Ppl~~t~~eid~ 432 (445)
T PRK09221 393 GARGYEAFMKCFEKGLLVRYT----------------------------------------GDTIALSPPLIIEKAQIDE 432 (445)
T ss_pred cchHHHHHHHHHHCCeEEeec----------------------------------------CCEEEEECCccCCHHHHHH
Confidence 111234677788899988632 2579999999999999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++.+.+
T Consensus 433 ~~~~l~~~l~~ 443 (445)
T PRK09221 433 LVDALGDALRA 443 (445)
T ss_pred HHHHHHHHHHh
Confidence 99999998743
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-09 Score=119.55 Aligned_cols=345 Identities=12% Similarity=0.043 Sum_probs=197.5
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..+.. ...+. ..++.+++++++....+ .+.|++++
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~--~~~~~----~~~la~~l~~~~p~~~~--~v~f~~sG 121 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWS--YAHPP----AIELAERLAALAPGDLN--RVFFTTGG 121 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccc--cCCHH----HHHHHHHHHHhCCCCcC--EEEEcCCc
Confidence 4556777543 23445888888888776432211111 11122 44566677777643333 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhc-----------cceEEcCchhhh-------c---
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKT-----------NQIYSFSVDDAR-------N--- 183 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~-----------~g~v~~~~~~~~-------~--- 183 (815)
++|++.++..... ++|. +|.....| ............ .+...+...... +
T Consensus 122 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 201 (460)
T PRK06541 122 SEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEA 201 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHH
Confidence 9999888765431 1233 66555443 333222221110 011111111100 0
Q ss_pred -----chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-cc
Q psy16512 184 -----MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YC 253 (815)
Q Consensus 184 -----~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~ 253 (815)
++.+++.+. .....++.+|+++.+.++.|.+.| +++|.++|+ ++|+++|+|+++ ++
T Consensus 202 ~~~~~~~~l~~~l~---~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~-----------~~g~llI~DEV~tGf 267 (460)
T PRK06541 202 FGRWAADRIEEAIE---FEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICD-----------RYDVLLVSDEVICAF 267 (460)
T ss_pred HHHHHHHHHHHHHH---hcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCC
Confidence 122222221 111234778888888999999998 778888888 999999999998 55
Q ss_pred CCCCC--CC--CCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNML--DL--KQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~~--dl--~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
|..-. .. -...+|+++ +.|.+++-. -+|++++++++.+.+.+.. . . + ..-...
T Consensus 268 GR~G~~~a~~~~gv~PDivt--~gK~l~~G~~pigav~~~~~i~~~~~~~~-~--~---------~--------~~~~T~ 325 (460)
T PRK06541 268 GRLGEMFGCERFGYVPDIIT--CAKGITSGYSPLGAMIASDRLFEPFLDGP-T--M---------F--------LHGYTF 325 (460)
T ss_pred CcCchhhhhhhcCCCCCEEE--ecccccCCccceeEEEEcHHHHHHhhcCC-C--c---------c--------ccCCCC
Confidence 43211 11 123589775 789887311 2789999888765543210 0 0 0 000011
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--C
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--T 406 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~ 406 (815)
..|..++++..+.++.+... ...++..++.+++.+.|+++.- .|.+..+ ...|.++.+.+..... .
T Consensus 326 ~gnp~~~aaala~l~~l~~~-~~~~~~~~~g~~l~~~L~~l~~---~~~v~~v--------rg~Gl~~~ie~~~~~~~~~ 393 (460)
T PRK06541 326 GGHPVSAAVALANLDIFERE-GLLDHVRDNEPAFRATLEKLLD---LPIVGDV--------RGDGYFYGIELVKDKATKE 393 (460)
T ss_pred CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhhc---CCCeEEE--------EecceEEEEEEecCccccc
Confidence 24556666666777776543 1238889999999999987720 1222222 2237788888753211 1
Q ss_pred cc--------CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 407 YY--------GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 407 ~~--------~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
.+ ....+.+.|.++||.+.+.. .....||+++.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~-------------------------------------~g~~~lrl~Ppl~ 436 (460)
T PRK06541 394 TFTDDESERLLRGFLSPALFEAGLYCRADD-------------------------------------RGDPVVQLAPPLI 436 (460)
T ss_pred CCcchhhhhhHHHHHHHHHHhCCeEEEecC-------------------------------------CCCCEEEEECCCC
Confidence 11 01235567778999986410 0025799999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.|++||+.++++|++.+.+
T Consensus 437 ~t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06541 437 SGQEEFDEIEQILRSVLTE 455 (460)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-09 Score=118.69 Aligned_cols=341 Identities=12% Similarity=0.064 Sum_probs=186.1
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.+.. ...... ..++-+.+.+..+.+... .++|++++
T Consensus 39 dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~-~~~f~~sG 111 (425)
T PRK08088 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQ--VLAYEP----YLELCEKMNQKVPGDFAK-KTLLVTTG 111 (425)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCcccc--ccCCHH----HHHHHHHHHHhCCCCCCC-EEEEeCCc
Confidence 34556666432 233677788887776642211110 000111 335556666666543211 38888888
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecCCC-cchhhHHHHhhc-----cce-----------EEcCchhh---hcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTDNH-TSVLGMRELVKT-----NQI-----------YSFSVDDA---RNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~~h-~s~~~~~~~~~~-----~g~-----------v~~~~~~~---~~~~~~~~~l 191 (815)
++|+..++..... +++++|.....| ............ .++ +|.+..+. ..++.+++.+
T Consensus 112 sea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l 191 (425)
T PRK08088 112 SEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIF 191 (425)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHH
Confidence 8876665554321 455566555544 333332222111 011 11111110 0012233222
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCCC--CC--CCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSNM--LD--LKQ 262 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~--~d--l~~ 262 (815)
. ......+..+|++.......|.+.+ +++|.++|+ ++|+++|+|+++.. +... .. ...
T Consensus 192 ~--~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~-----------~~~~~lI~Dev~~g~g~~g~~~~~~~~~ 258 (425)
T PRK08088 192 K--NDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCD-----------EHGIMLIADEVQTGAGRTGTLFAMEQMG 258 (425)
T ss_pred H--hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCcchhHHhhcC
Confidence 1 0011234678888777776677766 667788887 89999999998662 2211 11 112
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+| +.||+|.++ | | +|++++++++.+.+.... .....+.+.+...++.+
T Consensus 259 ~~pd--i~s~sK~l~-~-G~rig~v~~~~~~~~~~~~~~------------------------~~~t~~~~~~~~~a~~~ 310 (425)
T PRK08088 259 VAAD--LTTFAKSIA-G-GFPLAGVTGRAEVMDAIAPGG------------------------LGGTYAGNPIACAAALA 310 (425)
T ss_pred CCCC--EEEEecccc-C-CCcceeeEecHHHHhhcCCCC------------------------CCCCCCcCHHHHHHHHH
Confidence 2345 588999998 5 5 799999988876553221 11112345566666666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHHHHh
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEVQNL 416 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v~~~ 416 (815)
.++..... ...++.+++.+++.+.|.++... .|.+.-+. ..|.++++.+..... .......+.+.
T Consensus 311 ~l~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~v~--------g~G~~~~l~l~~~~~~~~p~~~~~~~l~~~ 379 (425)
T PRK08088 311 VLKVFEQE-NLLQKANALGEKLKDGLLAIAEK--HPEIGDVR--------GLGAMIAIELFEDGDHSKPNAKLTAQIVAR 379 (425)
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEe--------ccceEEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 66665432 22266666666666666554210 13322221 126778888743211 11123457777
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+.++||.+.++.. ..+.||+++....++++|+..++.|.+.+.
T Consensus 380 ~~~~Gv~~~~~~~-------------------------------------~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~ 422 (425)
T PRK08088 380 ARDKGLILLSCGP-------------------------------------YYNVLRILVPLTIEDAQIRQGLEIIAQCFD 422 (425)
T ss_pred HHhCCCEEecCCC-------------------------------------CCCEEEEECCCCcCHHHHHHHHHHHHHHHH
Confidence 7888988754210 126799999988899999999999999875
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-09 Score=121.18 Aligned_cols=337 Identities=11% Similarity=0.022 Sum_probs=194.5
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.... ....+. ..++-+++++.+....+ .+.|++++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sG 113 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFG--GFTHEP----AVELAQKLLEILPPSLN--KIFFADSG 113 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCcccc--ccCCHH----HHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 45677776432 344577888887776642211110 111122 45677777777643233 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCC-CcchhhHHHHhh----c---cc-------eEEcCch------hhhcc
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDN-HTSVLGMRELVK----T---NQ-------IYSFSVD------DARNM 184 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~-h~s~~~~~~~~~----~---~g-------~v~~~~~------~~~~~ 184 (815)
++|++.++..... ++|. ||..... |........... . .+ .++.... ...++
T Consensus 114 seAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l 193 (429)
T PRK06173 114 SVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAI 193 (429)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHH
Confidence 9999888765431 1343 6555544 433222211111 0 00 1111100 00122
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-- 257 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-- 257 (815)
+.+++.+. ...++..+|++.-. ....|...| ++++.++|+ +||+++|+|++| .|.-.
T Consensus 194 ~~l~~~i~----~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~-----------~~g~llI~DEv~-tG~GrtG 257 (429)
T PRK06173 194 EPLQDLLE----QKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCD-----------QYGVLLIFDEIA-TGFGRTG 257 (429)
T ss_pred HHHHHHHH----hCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHH-----------HcCCeEEecchh-cCCCcCC
Confidence 22333221 12345788888875 777788755 444666777 999999999998 44211
Q ss_pred ----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 258 ----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 258 ----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
.+.....+|+++ +.|.+++-. -++.+++++++.+.+.+.. .. . + ........|.
T Consensus 258 ~~~a~~~~gv~PDiv~--~gK~l~gG~~p~~a~~~~~~i~~~~~~~~-~~-~---------~--------~~~~T~~g~p 316 (429)
T PRK06173 258 KLFALEHAGVVPDIMC--IGKALTGGYLTLSATITTEAIAQTICSGE-AK-C---------F--------MHGPTFMANP 316 (429)
T ss_pred cchHHHhcCCCCCEEE--eehhhhCCccccceEEecHHHHHHHhcCC-CC-c---------c--------ccCCCCCcCH
Confidence 111223589876 789776211 1577778877665442100 00 0 0 0000112466
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 333 LAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
.++++..++++.+.+.. ..++++++.++|.+.|+++. +.+.+.-+ ...+.++.+.+.+... ...
T Consensus 317 ~~~aaa~a~l~~i~~~~-~~~~~~~~g~~l~~~L~~~~---~~~~v~~v--------Rg~Gl~~~iel~~~~~----~~~ 380 (429)
T PRK06173 317 LACAIAAESIRLLLESP-WQQNIQRIEAQLKQELAPAA---EFDSVAEV--------RVLGAIGVVEMKEPVN----MAT 380 (429)
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhh---cCCCeeee--------eccceEEEEEeCCccc----HHH
Confidence 77777888888887652 24888888999999887651 01222111 2347788888864321 234
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.+++. .+.||+.+.+..|++|++.++++|+
T Consensus 381 i~~~l~e~Gi~v~~~----------------------------------------g~~l~~~Ppl~it~~ei~~~~~~l~ 420 (429)
T PRK06173 381 LQPRFVEHGIWVRPF----------------------------------------GKLVYIMPPFIISPDELSQLTSGLL 420 (429)
T ss_pred HHHHHHHCCeEEEec----------------------------------------CCEEEEeCCccCCHHHHHHHHHHHH
Confidence 778888999998641 1579999999999999999999999
Q ss_pred HHHhh
Q psy16512 493 QYFLQ 497 (815)
Q Consensus 493 ~~~~~ 497 (815)
+.+.+
T Consensus 421 ~~l~~ 425 (429)
T PRK06173 421 RVLKQ 425 (429)
T ss_pred HHHHH
Confidence 98753
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-08 Score=115.40 Aligned_cols=342 Identities=13% Similarity=0.069 Sum_probs=193.0
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCC
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g 132 (815)
++..|+|..+ -+--.+.+.+++.+++....+... .....+. ..++-+++.+++.-.. + .++|+++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~--~~~~~~~----~~~la~~l~~~~p~~~~~--~v~f~~S 109 (425)
T PRK07495 38 EGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCH--QVVPYEN----YVRLAERLNALVPGDFAK--KTIFVTT 109 (425)
T ss_pred CCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCccc--CccCCHH----HHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 3456777543 244567788888877764221111 0111122 4556677777764321 2 4999999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCC-cchhhHHHHhh-----cc-------c--eEEcCchh-hhc----chhhhhh
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNH-TSVLGMRELVK-----TN-------Q--IYSFSVDD-ARN----MLNEFKE 190 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h-~s~~~~~~~~~-----~~-------g--~v~~~~~~-~~~----~~~~~~~ 190 (815)
+++|+..++.....-.|. ||.....| ........+.. .. + .++.+... ..+ .+.+++.
T Consensus 110 GseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~ 189 (425)
T PRK07495 110 GAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKL 189 (425)
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHH
Confidence 999999887755422333 66555443 33322222111 01 1 12222110 011 1112221
Q ss_pred hhhhhhh-cCCCccEEEEecccCCCcccc-C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCCCC
Q psy16512 191 SQENVEN-MRHSNSLFVYPAESNFSGTKY-P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDLKQ 262 (815)
Q Consensus 191 l~~~~~~-~~~~t~lv~i~~~~n~tG~~~-~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl~~ 262 (815)
+ .+. ...+..+|++..+...+|... | +++|.++|+ ++|+++|+|+++. +|.. ......
T Consensus 190 ~---~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~tG~gr~G~~~a~~~ 255 (425)
T PRK07495 190 F---KADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCD-----------QHGILLIADEVQTGFARTGKLFAMEH 255 (425)
T ss_pred H---HhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhcCCcCCCceeecc
Confidence 1 111 123577888877776688654 4 445667777 9999999999865 2221 111122
Q ss_pred --CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 --HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 --~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..+|+ .+++|.+++-.-+|++++++++.+.+.+.. .......|.++.++..+
T Consensus 256 ~gv~pDi--~tlsK~l~~G~pigav~~~~~i~~~~~~~~------------------------~~~T~~~~pl~~aaa~a 309 (425)
T PRK07495 256 HEVAADL--TTMAKGLAGGFPLAAVTGRAEIMDAPGPGG------------------------LGGTYGGNPLGIAAAHA 309 (425)
T ss_pred cCCCCCE--EeehhhhcCCccceEEEEcHHHHhccCCCC------------------------cCCCCCCCHHHHHHHHH
Confidence 23564 677898772111799999888766553211 01112446667777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC---HHHHHHhh
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG---YSEVQNLA 417 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~---~~~v~~~l 417 (815)
+++++.+. ...++.+++.+++.+.|+++... .|.+.-+ ...|.++.+.+.+.+...-+ ...+.+.+
T Consensus 310 ~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~i~~v--------rG~Gl~~~iel~~~~~~~~~~~~~~~~~~~~ 378 (425)
T PRK07495 310 VLDVIEEE-DLCERANQLGNRLKQRLASLRET--VPEIADI--------RGPGFMNAVEFNDADSGLPSAEFANRVRLKA 378 (425)
T ss_pred HHHHHHhc-hHHHHHHHHHHHHHHHHHHHHhh--CCCeeee--------ecCceEEEEEEecCCCCCccHHHHHHHHHHH
Confidence 88887643 22388888888888888776210 0222111 22367788877543211101 23466677
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++|+.+... |...+.||+.+.+..|+++++.++++|++.+.+
T Consensus 379 ~~~Gvl~~~~-------------------------------------g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~~ 421 (425)
T PRK07495 379 LEKGLILLTC-------------------------------------GVHGNVIRFLAPITIQDDVFAEALDILEASILE 421 (425)
T ss_pred HHCCeEEeec-------------------------------------CCCCCEEEEeCCCccCHHHHHHHHHHHHHHHHH
Confidence 8899988531 011268999999999999999999999998753
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-08 Score=115.78 Aligned_cols=340 Identities=14% Similarity=0.118 Sum_probs=194.8
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCC
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g 132 (815)
++..|+|..+. +--.+.+.+++.+++....+.... ...... ..++-++|.+.+... .+ .+.|+++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~----~~~lAe~L~~~~p~~~~~--~v~f~~S 123 (441)
T PRK05769 52 DGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLT--DFYYEP----AVELAERLVEIAPGGFEK--KVFFTNS 123 (441)
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCc--ccCCHH----HHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 34567776442 234477888888777642211110 001122 456677777776422 13 4999999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCC-cchhhHHHHhhc------------cceEEcCchhh-------hcc----hh
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNH-TSVLGMRELVKT------------NQIYSFSVDDA-------RNM----LN 186 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h-~s~~~~~~~~~~------------~g~v~~~~~~~-------~~~----~~ 186 (815)
+++|++.++.....-.|. ||.....| ............ .+...+..... .+. +.
T Consensus 124 GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
T PRK05769 124 GTESNEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNA 203 (441)
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHH
Confidence 999999888755432343 66655443 333332222110 01111111000 000 00
Q ss_pred hhhhhhh-hhhh--cCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC-
Q psy16512 187 EFKESQE-NVEN--MRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM- 257 (815)
Q Consensus 187 ~~~~l~~-~~~~--~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~- 257 (815)
..+.+.+ +.+. ...++.+|++..+....|.+.| +++|.++|+ ++|+++|+|+++. +|..-
T Consensus 204 ~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~-----------~~g~lli~DEv~tG~gr~G~ 272 (441)
T PRK05769 204 VLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLAD-----------KYGILLIDDEVQTGMGRTGK 272 (441)
T ss_pred HHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcccc
Confidence 0011111 1111 1245889999999989999998 888899998 8999999999876 32211
Q ss_pred -CCCC--CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 258 -LDLK--QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 258 -~dl~--~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
+... ...+|+++ +.|.+++...+|++++++++.+.. ....+ ... ..+..+
T Consensus 273 ~~a~~~~gv~pDivt--~~K~l~~G~p~gav~~~~~i~~~~-~~~~~-----------------------~T~-~g~p~~ 325 (441)
T PRK05769 273 MFAIEHFGVEPDIIT--LAKAIAGGLPLGAVIGRAELMFLP-PGSHA-----------------------NTF-GGNPVA 325 (441)
T ss_pred eehhhccCCCCCEEE--EcccccCCcccEEEEEehhhhhcC-CCCCC-----------------------CCC-CcCHHH
Confidence 1111 23478875 569777322378888888765322 10000 001 235667
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc--cCHHH
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY--YGYSE 412 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~--~~~~~ 412 (815)
.+++.++++.+.+ ...++..++.++|.+.|+++... .+.+.-+ ...|.++.+.+.+...+. -....
T Consensus 326 ~aaa~a~L~~l~~--~~~~~~~~~g~~l~~~L~~l~~~--~~~~~~v--------rg~G~~~~i~~~~~~~~~~~~~~~~ 393 (441)
T PRK05769 326 AAAALATLEELEE--GLLENAQKLGEYLRKELKELKEK--YEFIGDV--------RGLGLMIGVELVKDRKEPDPKLRDK 393 (441)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh--CCCeeee--------ecceEEEEEEeccCCccccHHHHHH
Confidence 7777788888866 33488888889999888776200 0211111 234677777775321110 01124
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.+.++||.+.+.. ...+|+++.+..|++||++++++|+
T Consensus 394 ~~~~~~~~Gil~~~~~---------------------------------------~~~lr~~p~l~~t~~~id~~~~~l~ 434 (441)
T PRK05769 394 VLYEAFKRGLLLLGAG---------------------------------------KSAIRIIPPLIITEEEADIGLEILE 434 (441)
T ss_pred HHHHHHhCCcEEecCC---------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5666778999875310 2579999999999999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+.+.
T Consensus 435 ~~l~ 438 (441)
T PRK05769 435 EAIK 438 (441)
T ss_pred HHHH
Confidence 9874
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-09 Score=117.33 Aligned_cols=332 Identities=12% Similarity=0.057 Sum_probs=187.0
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..+. . .... ..++-++|.++.... + .+.|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~-~~~~----~~~la~~L~~~~~~~-~--~v~f~~sG 107 (408)
T PRK04612 38 QGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNV--F-YSAP----PLKLAEELVTASRFA-E--KVFLCNSG 107 (408)
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc--c-CCHH----HHHHHHHHHhhCCCC-C--EEEEcCch
Confidence 4456777543 2345577888887777542221111 1 1111 345566666665321 3 49999999
Q ss_pred hhhHHHHHhhhcc-----C--CCc--EEEecCCCcc-hhhHHHHhhcc----ceEEcCchh----hhcchhhhhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF-----N--EGS--FIYLTDNHTS-VLGMRELVKTN----QIYSFSVDD----ARNMLNEFKESQENV 195 (815)
Q Consensus 134 t~al~~~~~al~~-----~--~gd--vv~~~~~h~s-~~~~~~~~~~~----g~v~~~~~~----~~~~~~~~~~l~~~~ 195 (815)
++|++.++..... . ++. ||.....|.. ........... ++.+...+. .-+.+.+++++.
T Consensus 108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--- 184 (408)
T PRK04612 108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA--- 184 (408)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC---
Confidence 9999888765431 1 123 5665554433 33322221111 111111110 012333333221
Q ss_pred hhcCCCccEEEEecccCCCccccC-----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCCCCCCcE
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYP-----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLKQHQPDF 267 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~-----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~~~~~D~ 267 (815)
..+..+|++. |.+.+|-.++ +++|.++|+ ++|+++|+|+++. +|... ......++..
T Consensus 185 ---~~~~aavi~e-P~~~~gg~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~tg~gr~G~~~a~~~~~~~p 249 (408)
T PRK04612 185 ---GGDVAAVMLE-PIQGEGGVMPAAPGFLARVRALCD-----------QHDALLVLDEIQCGMGRTGTLFAHWQEQVTP 249 (408)
T ss_pred ---CCCEEEEEEC-CccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCCchhhhhhcCCCC
Confidence 1234444444 5555665544 555777777 9999999999975 22211 1111123344
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
.+.+++|.++ + | +|++++++++.+.+.... .....+.+.++..++.++++.+
T Consensus 250 di~t~~K~l~-~-G~piga~~~~~~~~~~~~~~~------------------------~~~t~~~~p~~~aaa~a~L~~~ 303 (408)
T PRK04612 250 DIVTLAKALG-G-GFPIGAMLAGPKVAETMQFGA------------------------HGTTFGGNPLAAAVARVALRKL 303 (408)
T ss_pred CEEEEcchhc-C-CCceEEEEECHHHHhhhcCCC------------------------cCCCCCCCHHHHHHHHHHHHHH
Confidence 4567799888 3 4 799888877655443211 0001134567777777888887
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.+. ...++++++.+++.+.|+++.... +.+.-+ ...|.++.+.+...... ....+.+.+.++||.+.
T Consensus 304 ~~~-~l~~~~~~~g~~l~~~l~~l~~~~--~~i~~v--------rg~Gl~~~i~~~~~~~~--~a~~i~~~l~~~Gvlv~ 370 (408)
T PRK04612 304 ASP-QIAANVARQSAALRAGLEALNAEF--GVFAQV--------RGRGLMLGAVLAPAHAG--QAGAILDLAAEHGLLLL 370 (408)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHHHhhC--CCeeee--------eccceEEEEEecCchhh--HHHHHHHHHHHCCeEEe
Confidence 653 223888888899999888762100 111111 23477777777532111 12347778889999885
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+. | .+.+|+.+++..+++||+.++++|++.+.+
T Consensus 371 ~~-------------------------------------g--~~~lRl~Ppl~it~eeid~~l~~l~~~l~~ 403 (408)
T PRK04612 371 QA-------------------------------------G--PDVLRFVPALNLTDAELADGLARLRLALAD 403 (408)
T ss_pred eC-------------------------------------C--CCEEEEcCCccCCHHHHHHHHHHHHHHHHH
Confidence 31 0 267999999999999999999999998754
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=115.42 Aligned_cols=341 Identities=12% Similarity=0.126 Sum_probs=191.2
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..+. ...... ..++-++|++++.....+ .+.|++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~~-~v~f~~sG 124 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFN--VMMYEP----YIELAEKLAALAPGSFDK-KVLFLNSG 124 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCcccc--ccccHH----HHHHHHHHHHhCCCCCCC-EEEEcCCc
Confidence 3456777543 2345578888888777643221111 011122 556777777777532211 49999999
Q ss_pred hhhHHHHHhhhccCCC--cEEEecCCCcc-hhhHHHHhhc-------cc-----e--EEcC-----chhhh-------cc
Q psy16512 134 TSAIKTVSEYFEFNEG--SFIYLTDNHTS-VLGMRELVKT-------NQ-----I--YSFS-----VDDAR-------NM 184 (815)
Q Consensus 134 t~al~~~~~al~~~~g--dvv~~~~~h~s-~~~~~~~~~~-------~g-----~--v~~~-----~~~~~-------~~ 184 (815)
|+|++.++.....-.| .||.....|.. .......... .+ . +|.. +.+.. ..
T Consensus 125 seA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (451)
T PRK06918 125 AEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMI 204 (451)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHH
Confidence 9999888775542223 36665544433 3332222111 01 1 1111 00000 00
Q ss_pred hhhhhhhhhhhhhc-CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--
Q psy16512 185 LNEFKESQENVENM-RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN-- 256 (815)
Q Consensus 185 ~~~~~~l~~~~~~~-~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~-- 256 (815)
+.+++.+ .... ..++.+|++.-++...|.+.| +++|.++|+ ++|+++|.|+++. ++..
T Consensus 205 ~~~~~~~---~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~-----------~~gillI~DEV~tg~gr~g~ 270 (451)
T PRK06918 205 EEFKNFF---ISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICS-----------EHGILFVADEIQTGFARTGK 270 (451)
T ss_pred HHHHHHH---HhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCcCccCc
Confidence 1111111 0111 235778888777766687666 444666676 9999999998854 2221
Q ss_pred CCCCCCCC--CcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 257 MLDLKQHQ--PDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 257 ~~dl~~~~--~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
......++ +|+ .|++|.++ + | +|++++++++.+.+.+... ......+.
T Consensus 271 ~~a~~~~~v~pDi--~t~sK~l~-~-G~pig~v~~~~~i~~~~~~~~~------------------------~~T~~g~~ 322 (451)
T PRK06918 271 YFAIEHFDVVPDL--ITVSKSLG-A-GVPISGVIGRKEIMDESAPGEL------------------------GGTYAGSP 322 (451)
T ss_pred eehhHhcCCCCCE--Eeeehhhc-C-CCccEEEEEcHHHHhccCCCCc------------------------CcCCCcCH
Confidence 12222333 784 47899888 4 5 8999999887665532110 11123456
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----Ccc
Q psy16512 333 LAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYY 408 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~ 408 (815)
+...++.++++.+.+. ...++.+++.+++.+.|+++.. ..+.+.-+ ...|.++.+.+..... ...
T Consensus 323 l~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~l~~l~~--~~~~~~~v--------rg~G~~~~~~~~~~~~~~~~~~~ 391 (451)
T PRK06918 323 LGCAAALAVLDIIEKE-NLNDRAIELGKVVMNRFEEMKN--KYNCIGDV--------RGLGAMCAFELVQDRKTKEPDKT 391 (451)
T ss_pred HHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHh--hCCCceee--------ccceeEEEEEEccCCCcCCCcHH
Confidence 6677777777776542 1237788888888888877621 01222112 1236666666632110 101
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
....+.+.+.++||.+.++..+ .+++|+++.+..++++++.++
T Consensus 392 ~~~~l~~~~~~~Gvlv~~~~~~-------------------------------------~~~lrl~p~l~~t~~~id~~l 434 (451)
T PRK06918 392 LTANICKEANKRGLLLLSAGTY-------------------------------------GNVIRVLMPLVITDEQLEEGL 434 (451)
T ss_pred HHHHHHHHHHHCCeEEeecCCC-------------------------------------CCEEEEECCCccCHHHHHHHH
Confidence 1234566668899998764210 267999998777899999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|.+.+..
T Consensus 435 ~~l~~~l~~ 443 (451)
T PRK06918 435 TIIEESLQA 443 (451)
T ss_pred HHHHHHHHH
Confidence 999998743
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-09 Score=116.90 Aligned_cols=340 Identities=12% Similarity=0.063 Sum_probs=195.1
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... ....+. ..++-++|++++....+ .+.|++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~--~v~f~~SG 112 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG--GITHPP----AIELCRKLVAMTPQPLE--CVFLADSG 112 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcccc--ccCCHH----HHHHHHHHHhhCCCCcC--EEEEeCCc
Confidence 3556777543 2344577888887776542221111 011122 45666777777653333 49999999
Q ss_pred hhhHHHHHhhhcc-----CCCc--EEEecCCC-cchhhHHHHhhc-------cc-------eEEcCch------hhhcch
Q psy16512 134 TSAIKTVSEYFEF-----NEGS--FIYLTDNH-TSVLGMRELVKT-------NQ-------IYSFSVD------DARNML 185 (815)
Q Consensus 134 t~al~~~~~al~~-----~~gd--vv~~~~~h-~s~~~~~~~~~~-------~g-------~v~~~~~------~~~~~~ 185 (815)
++|++.++..... ..|. +|.....| ............ .. .++.... ...+.+
T Consensus 113 sEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~ 192 (428)
T PRK07986 113 SVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIA 192 (428)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHH
Confidence 9999888775431 1233 66655543 333222221110 00 1111100 011223
Q ss_pred hhhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC---
Q psy16512 186 NEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--- 256 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--- 256 (815)
.+++.+. ...++..+|++..+ +...|...| +++|.++|+ ++|+++|+|+++. +|..
T Consensus 193 ~l~~~l~----~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~-----------~~g~lLI~DEv~tG~GrtG~~ 257 (428)
T PRK07986 193 PFARLMA----AHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCD-----------REGILLIADEIATGFGRTGKL 257 (428)
T ss_pred HHHHHHH----hCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCccCCCe
Confidence 3333331 12245678888774 555566543 567788888 9999999999973 2211
Q ss_pred -CCCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 257 -MLDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 257 -~~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
..+.....+|+++ +.|.+++- .-+|++++++++.+.+..... +. + ..-...+.|.++
T Consensus 258 fa~~~~gv~PDi~t--~gK~l~gG~~p~~av~~~~~i~~~~~~~~~--~~---------~--------~~~~T~~g~p~~ 316 (428)
T PRK07986 258 FACEHAGIAPDILC--LGKALTGGTMTLSATLTTREVAETISNGEA--GC---------F--------MHGPTFMGNPLA 316 (428)
T ss_pred eeecccCCCCCEEE--echhhhCCcccCcchhchHHHHHHhhcCCC--Cc---------c--------ccCCCCCcCHHH
Confidence 1122233588885 78977622 125777788877665532100 00 0 000011245677
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
.+++.++++.+.+.. ..++..++.+++.+.|+++.. .+.+.-+ ...|.++.+.+.... ....+.
T Consensus 317 ~aaa~a~L~~i~~~~-~~~~~~~~g~~l~~~l~~l~~---~~~i~~v--------Rg~Gl~~~ve~~~~~----~~~~~~ 380 (428)
T PRK07986 317 CAVANASLSLLESGD-WQQQVAAIEAQLREELAPLRD---APMVADV--------RVLGAIGVVETTRPV----NMAALQ 380 (428)
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHhc---CCCEEeE--------eccceEEEEEeCCcc----cHHHHH
Confidence 777778888876542 248888889999998887621 1222211 234677777775432 123577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.+.++||.+++. .+.+|+...+..|++||++++++|.+.
T Consensus 381 ~~l~~~Gl~~~~~----------------------------------------g~~i~~~Ppl~it~~ei~~~~~~l~~~ 420 (428)
T PRK07986 381 RFFVEQGVWIRPF----------------------------------------GKLIYLMPPYIILPEQLQRLTAAVNRA 420 (428)
T ss_pred HHHHHCCcEEEec----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 8888999988631 157999999999999999999999998
Q ss_pred HhhcC
Q psy16512 495 FLQQA 499 (815)
Q Consensus 495 ~~~~~ 499 (815)
+.+..
T Consensus 421 l~~~~ 425 (428)
T PRK07986 421 VQDET 425 (428)
T ss_pred Hhhcc
Confidence 75543
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-08 Score=113.86 Aligned_cols=341 Identities=15% Similarity=0.133 Sum_probs=196.3
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+ -+--.+.+.+++.+++......++. . .... ..++-++|+++.....+ .+.|+++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~--~-~~~~----~~~lae~L~~~~p~~~~--~v~f~~S 120 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAPA--H-ANDA----RSEAARLIAERAPGDLS--KVFFTNG 120 (451)
T ss_pred CCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCCc--c-CCHH----HHHHHHHHHHhCCCCCC--EEEEcCC
Confidence 34566777644 2344578888888877643222221 1 1122 45666777777643233 3999999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhc----------cceEEc--Cchhh-------------hcc
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKT----------NQIYSF--SVDDA-------------RNM 184 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~----------~g~v~~--~~~~~-------------~~~ 184 (815)
+++|+..++.....-.|. ||.....|.. .......... .+...+ ..... ...
T Consensus 121 GsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06062 121 GADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL 200 (451)
T ss_pred hHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence 999999888765422343 6665544333 3222222110 011111 10000 012
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM-- 257 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~-- 257 (815)
+.+++.+. ....++..+|++..+....|.+.| +++|.++|+ ++|+++|+|+++. +|..-
T Consensus 201 ~~le~~l~---~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~-----------~~g~lLI~DEV~tGfGRtG~~ 266 (451)
T PRK06062 201 AHLERVIE---LEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCD-----------RHGIVLIADEVMAGFGRTGKW 266 (451)
T ss_pred HHHHHHHH---hcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEeeccccCCCcCcHH
Confidence 22222221 111245789999989888899988 888888998 9999999999876 32210
Q ss_pred --CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 258 --LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 258 --~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
.+.-...||++ ++.|.+++-. -+|++++++++.+.+....+.. .. ..+-|..+
T Consensus 267 ~a~~~~gv~PDi~--t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~---------------------~~-T~~gnpl~ 322 (451)
T PRK06062 267 FAIEHFGVVPDLI--TFAKGVNSGYVPLGGVAISEAIAATFADRPYPG---------------------GL-TYSGHPLA 322 (451)
T ss_pred HHHHhcCCCCCee--eechhhhcCCcCcEEEEEcHHHHHHhccCCCCC---------------------CC-CCCCCHHH
Confidence 11122358966 4679887311 1788888887765543110000 00 11335677
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--CccC--
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELS-QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TYYG-- 409 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~-~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~~~-- 409 (815)
.+++.++++.+.+.+ ..++..++- +++.+.|+++... .|.+.-+ ...|.++.+.+..... ..++
T Consensus 323 ~Aaa~a~L~~l~~~~-l~~~~~~~G~~~l~~~L~~l~~~--~~~v~~v--------rG~Gl~~gve~~~~~~~~~~~~~~ 391 (451)
T PRK06062 323 CAAAVATINAMEEEG-IVENAARIGAEVLGPGLRELAER--HPSVGEV--------RGLGVFWALELVADRETREPLAPY 391 (451)
T ss_pred HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHhc--CCcEEeE--------eccccEEEEEEcccccccCCCccc
Confidence 777778888876642 337777776 5777777665210 0222111 2236677777643211 1110
Q ss_pred ------HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 410 ------YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 410 ------~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
...+.+.+.++||.+... .+.+|+++.+..|++|
T Consensus 392 ~~~~~~~~~~~~~l~~~Gvl~~~~----------------------------------------~~~lrl~ppl~~t~~e 431 (451)
T PRK06062 392 GASSAAMAAVKAACKERGLLPFVN----------------------------------------GNRIHVVPPCTVTEDE 431 (451)
T ss_pred chhhHHHHHHHHHHHHCCcEEeec----------------------------------------CCEEEEECCccCCHHH
Confidence 234667778889886421 2579999988899999
Q ss_pred HHHHHHHHHHHHhh
Q psy16512 484 VKYFLSFLNQYFLQ 497 (815)
Q Consensus 484 i~~lv~~L~~~~~~ 497 (815)
|+++++++++.+..
T Consensus 432 id~~~~~l~~~l~~ 445 (451)
T PRK06062 432 VREGLAILDAALAV 445 (451)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998743
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=114.90 Aligned_cols=342 Identities=13% Similarity=0.116 Sum_probs=197.8
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+.-.+.+.+++.+++....+.+.. ....... ..++.++++++++...+. ++|++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~-~~~~~~~----~~~lae~L~~~~p~~~~~--v~f~~SG 124 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMF-FHTTHPA----VIELSELLFSLLPGHYSH--AIYTNSG 124 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecc-cccCCHH----HHHHHHHHHHhCCCCcCE--EEEeCCc
Confidence 3456777322 2344588888888877653222211 0111222 567788888888643333 9999999
Q ss_pred hhhHHHHHhhhcc------CCCc-EEEecCC--CcchhhHHHHhhcc-----c-----eEEcCchhh-------------
Q psy16512 134 TSAIKTVSEYFEF------NEGS-FIYLTDN--HTSVLGMRELVKTN-----Q-----IYSFSVDDA------------- 181 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd-vv~~~~~--h~s~~~~~~~~~~~-----g-----~v~~~~~~~------------- 181 (815)
++|+..++..... ++++ +|+.... |.+........... + ...++....
T Consensus 125 seA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (460)
T PRK12403 125 SEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFG 204 (460)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence 9999998887641 2334 4444333 66654433322111 1 111110000
Q ss_pred -hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC
Q psy16512 182 -RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS 255 (815)
Q Consensus 182 -~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~ 255 (815)
...+.+++.+ .+...+++.+|++..+....|.+.| +++|.++|+ ++|+++|+|+++. +|.
T Consensus 205 ~~~~~~le~~~---~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~-----------~~g~lLI~DEV~tGfGR 270 (460)
T PRK12403 205 RRAALQLEEKI---LELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICR-----------QYDVLLCADEVIGGFGR 270 (460)
T ss_pred HHHHHHHHHHH---HHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCc
Confidence 0011222211 1111245778999988888899888 888899998 9999999999984 322
Q ss_pred CC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC--
Q psy16512 256 NM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG-- 328 (815)
Q Consensus 256 ~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g-- 328 (815)
.- .+.-...+|+++ +.|.+++-. -+|++++++++.+.+.+. + .. ....+
T Consensus 271 tG~~~a~e~~gv~PDiv~--~gK~lggG~~Piga~v~~~~i~~~~~~~--~-~~-------------------~~~~~T~ 326 (460)
T PRK12403 271 TGEWFAHEHFGFEPDTLS--IAKGLTSGYVPMGGLVLSKRIAEALVEQ--G-GV-------------------FAHGLTY 326 (460)
T ss_pred CchhhhhhhcCCCCCeEE--EcccccccccceEEEEECHHHHHHHhcC--C-Cc-------------------cccCCCC
Confidence 11 111123589886 789777321 267788887766544211 0 00 00112
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAF-ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-- 405 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~-~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-- 405 (815)
..|..+.++..++|+.+.+.. ..++++ ++.+++.+.|+++... .|.+.-+ ...|.++.+.+.....
T Consensus 327 ~gnPl~~Aaala~L~~i~~~~-l~~~~~~~~g~~l~~~L~~l~~~--~~~i~~v--------rG~Gl~~gie~~~~~~~~ 395 (460)
T PRK12403 327 SGHPVAAAVAIANLKALRDEG-VVTRVKDDTGPYLQRCLREVFGD--HPLVGEV--------QGAGLVAALQFAEDKATR 395 (460)
T ss_pred CCCHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHhc--CCCEEeE--------eecceEEEEEEccCcccc
Confidence 256778888888888887642 237775 7888888888654110 0222111 2347788887753211
Q ss_pred CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 406 TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 406 ~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.... ...+.+.+.++|+.+... .+.+|++..+-.|
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------~~~~~l~Ppl~it 435 (460)
T PRK12403 396 KRFANENDLAWRCRTIGFEEGVIIRST----------------------------------------LGRMIMAPALVAG 435 (460)
T ss_pred ccccchhHHHHHHHHHHHhCCEEEEec----------------------------------------CCEEEEECCCCCC
Confidence 1110 112344557788887531 1458999998899
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
++|+++++++|++.+.+
T Consensus 436 ~~eid~~~~~l~~al~~ 452 (460)
T PRK12403 436 RAEIDELVDKTRIAVDR 452 (460)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998754
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=116.31 Aligned_cols=357 Identities=15% Similarity=0.103 Sum_probs=204.0
Q ss_pred ccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHh
Q psy16512 43 KTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 43 ~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~ 116 (815)
...-|.++..+ ++..|+|..+ -+--.+.+.+++.+++....+.+..+.. .... ..++.++|++
T Consensus 35 ~~a~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~-~~~~----~~~lae~L~~ 103 (460)
T PRK06105 35 ERGEGIYVYDD------AGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHK-SHGP----VIDLAEKLVA 103 (460)
T ss_pred EeeeEEEEEEC------CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeeccccc-CCHH----HHHHHHHHHH
Confidence 44455554443 3455766543 2344588888888887653221111111 1122 4567777888
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhcc------CCCc--EEEecCC-CcchhhHHHHhhc------cc-----eEEc
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS--FIYLTDN-HTSVLGMRELVKT------NQ-----IYSF 176 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~------~~gd--vv~~~~~-h~s~~~~~~~~~~------~g-----~v~~ 176 (815)
++..+.+ .+.|++++++|++.++..... .++. ||..... |............ .+ ...+
T Consensus 104 ~~p~~~~--~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~ 181 (460)
T PRK06105 104 MAPVPMS--KVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHT 181 (460)
T ss_pred hCCCCCC--EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEc
Confidence 7753333 399999999999988876420 1233 6665544 4333332211110 01 1111
Q ss_pred Cchhh---------------hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccc
Q psy16512 177 SVDDA---------------RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFK 237 (815)
Q Consensus 177 ~~~~~---------------~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~ 237 (815)
+.... ...+.+++.+. .....+..+|++..+....|...| ++++.++|+
T Consensus 182 ~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~---~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~--------- 249 (460)
T PRK06105 182 GCPHYYRFGLPGESEEAFATRLANELEALIL---AEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR--------- 249 (460)
T ss_pred CCCcccccccCCCChHHHHHHHHHHHHHHHH---HcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH---------
Confidence 10000 01122222221 111245789999888888898887 777888888
Q ss_pred cCCCCeEEEEeccc-ccCCCC----CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecC
Q psy16512 238 CSRSNCFVLLDAAT-YCGSNM----LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMAN 311 (815)
Q Consensus 238 ~~~~gi~vivD~a~-~~g~~~----~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 311 (815)
++|+++|+|+++ ++|..- .+.....||++ ++.|.+++- .-+|++++++++.+.+.+.....+.
T Consensus 250 --~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~--~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~------- 318 (460)
T PRK06105 250 --KYDILLVADEVICGFGRTGNMFGCETFGIKPDIL--VMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGT------- 318 (460)
T ss_pred --HcCCeEEEeccccCCCcCchhhhHHhcCCCCCee--eeecccccCcccceEEEEcHHHHHHHhcccccCcc-------
Confidence 999999999997 454321 12223358976 457977732 1178888888776544221000000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
+ .......-|..+.++..++++.+.+. ...++++++.++|.+.|+++. . .|.+.-+ ..
T Consensus 319 --~--------~h~~T~~gnpl~~aaa~a~L~~i~~~-~l~~~v~~~g~~l~~~L~~l~-~--~~~v~~v--------rG 376 (460)
T PRK06105 319 --F--------GHGFTASGHPVAAAVALENLAIIEER-DLVGNAAERGARLQARLRALA-D--HPLVGEV--------RG 376 (460)
T ss_pred --c--------ccCCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHhh-c--CCCeEEE--------Ee
Confidence 0 00011134566777777788887754 223889999999999988761 1 1222211 23
Q ss_pred ccceEEEEEecCCC--CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 392 QGNIVNFNLLHKDG--TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 392 ~~~i~~f~~~~~~~--~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
.|.++.+.+..... ..++ ...+.+.+.++||.+.+.
T Consensus 377 ~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~------------------------------------- 419 (460)
T PRK06105 377 VGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM------------------------------------- 419 (460)
T ss_pred cceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec-------------------------------------
Confidence 47777787753211 1110 134666778899887531
Q ss_pred CCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+++.+..|++|+++++++|.+.+.+
T Consensus 420 ---g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 449 (460)
T PRK06105 420 ---GDTLAFCPPLIITAAQVDEMVDRFGRALDD 449 (460)
T ss_pred ---CCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 157999999888999999999999998864
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-08 Score=113.97 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=192.5
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +.-++.+.+++.+++.... .. ...... ..++.+++++++. ..+. ++|+++
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~--~~---~~~~~~----~~~la~~L~~~~~-~~~~--v~~~~s 114 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL--SF---GAPTEL----EVELAELVIELVP-SIEM--VRMVNS 114 (426)
T ss_pred CCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC--cC---CCCCHH----HHHHHHHHHHhCC-CCCE--EEEecC
Confidence 345667776442 2456788888888776421 11 111222 5578888887763 1333 999999
Q ss_pred chhhHHHHHhhhccC-CCc-EEEecCCCcchhh-HHHHhhc----cc-------eEEcCchh----hhcchhhhhhhhhh
Q psy16512 133 ATSAIKTVSEYFEFN-EGS-FIYLTDNHTSVLG-MRELVKT----NQ-------IYSFSVDD----ARNMLNEFKESQEN 194 (815)
Q Consensus 133 ~t~al~~~~~al~~~-~gd-vv~~~~~h~s~~~-~~~~~~~----~g-------~v~~~~~~----~~~~~~~~~~l~~~ 194 (815)
+++|+..++.....- .++ +|.....|..... ....... .+ ..++.... ..+++.+++.+.
T Consensus 115 GseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~-- 192 (426)
T PRK00062 115 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFE-- 192 (426)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHH--
Confidence 999999998875421 233 7766665544321 1111000 00 00000000 013334443332
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~~ 265 (815)
....++.+|++..+...+|.+.| +++|.++|+ +||+++|+|+++. |... .+.-...+
T Consensus 193 --~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~-G~r~g~~~~~~~~~~~p 258 (426)
T PRK00062 193 --EYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCD-----------EHGALLIFDEVMT-GFRVALGGAQGYYGVTP 258 (426)
T ss_pred --hCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeechh-ccccCCccHHHHhCCCc
Confidence 11246889999988888999998 778888888 9999999999976 2210 11111246
Q ss_pred cEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
|+ .+++|.+++-.-+|++++++++.+.+... +. . ..+...+.+....+++.++++.+
T Consensus 259 Di--~~~gK~l~~G~p~ga~~~~~~i~~~~~~~--~~-~------------------~~~~T~~~~p~~~aaa~a~L~~~ 315 (426)
T PRK00062 259 DL--TTLGKIIGGGLPVGAFGGRREIMEQLAPL--GP-V------------------YQAGTLSGNPLAMAAGLATLKLL 315 (426)
T ss_pred ch--HhhhhHhhCCCcceeeeEHHHHHHhhccC--CC-c------------------eecccCcCCHHHHHHHHHHHHHH
Confidence 75 57789887211178888888877655311 00 0 01111235667777777888877
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc------C---HHHHHHh
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY------G---YSEVQNL 416 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~------~---~~~v~~~ 416 (815)
... ...++.+++.+++.+.|+++.... +.+.-+ ...|.++.+.+........ + ...+.+.
T Consensus 316 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v--------rg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~ 384 (426)
T PRK00062 316 KEP-GFYEELEALTKRLAEGLKEAAKKA--GIPLTV--------NRVGSMFGLFFTDEPVTNYADAKKSDTERFARFFHA 384 (426)
T ss_pred hcc-hHHHHHHHHHHHHHHHHHHHHHHc--CCceEE--------EEecceEEEEEecCCCcchhhhccccHHHHHHHHHH
Confidence 653 223677777777777776541000 111101 1237788887754211100 1 1347778
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.++||.+.+.. .+.+|++ ...|++|+++++++|++++.
T Consensus 385 l~~~Gv~v~~~~---------------------------------------~~~~~~~--~~~t~~ei~~~~~~l~~~l~ 423 (426)
T PRK00062 385 MLDEGVYLAPSQ---------------------------------------FEAGFVS--AAHTDEDIEKTLEAARKAFA 423 (426)
T ss_pred HHHCCeEeecCC---------------------------------------cCceeee--ccCCHHHHHHHHHHHHHHHH
Confidence 888999886421 0345665 45699999999999998774
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=113.68 Aligned_cols=333 Identities=15% Similarity=0.164 Sum_probs=191.6
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +.-.+.+.+++.+++.... ... ..... ..++-++|.+.+....+ .+.|+++
T Consensus 50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~~---~~~~~----~~~la~~L~~~~~~~~~--~v~f~~S 118 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT--SYG---LTSEQ----EILFAEELFSYLGLEDH--KIRFVSS 118 (433)
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC--CCC---CCCHH----HHHHHHHHHHhCCCCcC--EEEEeCc
Confidence 345667776442 3445788888877765421 100 11122 45667777777754323 4999999
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCcchh----hHHHHhhcc-----c----------eEEcCchhhhcchhhhhhh
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHTSVL----GMRELVKTN-----Q----------IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~s~~----~~~~~~~~~-----g----------~v~~~~~~~~~~~~~~~~l 191 (815)
+++|+..++.....-.|. ||.....|.... ......... . ...+.. .+.+.+++.+
T Consensus 119 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~~l 195 (433)
T PRK00615 119 GTEATMTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY---NDFQIFQTVM 195 (433)
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC---CCHHHHHHHH
Confidence 999999888765422344 555554333221 111100000 0 011111 1233334333
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccChH----HHHHHhhccccccccccCCCCeEEEEecccccCCC--C---CCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYPLS----WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--M---LDLKQ 262 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~----~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--~---~dl~~ 262 (815)
. ...++..+|++..+....|...|.+ +|.++|+ +||+++|+|+++. |.. . ...-.
T Consensus 196 ~----~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~-----------~~g~llI~DEv~t-G~R~G~~ga~~~~g 259 (433)
T PRK00615 196 N----SLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCR-----------RTGSLSIMDEVVT-GFRVAQGGAAAIYH 259 (433)
T ss_pred H----hcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEcccc-cccccHhHHHHhcC
Confidence 2 1224578999999998899988865 7888888 8999999999983 321 0 01112
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~ 340 (815)
..+|+++ +.|.+|+-.-+|++++++++.+.+.+. + ..+..+| .|...+++..+
T Consensus 260 v~PDi~~--~gK~lggG~p~~av~~~~~i~~~~~~~--~---------------------~~~~~~T~~g~p~~~aa~la 314 (433)
T PRK00615 260 VKPDITV--YGKILGGGLPAAAVVAHKSIMDHLAPE--G---------------------TIFQAGTLSGNPLAMAAGKA 314 (433)
T ss_pred CCCCeEE--EcccccCCcceeeeeecHHHHhhhcCC--C---------------------CcccCCCCcccHHHHHHHHH
Confidence 3588865 689887311168888888887655321 0 0011223 46677788888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc---------CHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY---------GYS 411 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~---------~~~ 411 (815)
+++.+.+.. ..++.+++.+++.+.|+++....+.| +.... .+.++.+.+.......+ ...
T Consensus 315 ~L~~i~~~~-~~~~~~~~g~~l~~~l~~~~~~~g~~-v~~~r---------~G~~~~i~~~~~~~~~~~~~~~~~~~~~~ 383 (433)
T PRK00615 315 SINLCREQG-FYTQLSTLEQNFLSPIEEMIRSQGFP-VSLVR---------YGSMFSFFFNENRPNNLAEAQLSDIEAFQ 383 (433)
T ss_pred HHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe---------eceEEEEEEeCCCCCChHHHhhCCHHHHH
Confidence 888876532 24777788888877776542111223 33332 36777777764321100 022
Q ss_pred HHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.+.+.|.++||.+.+..+. .. .+....|++|||++++++
T Consensus 384 ~~~~~l~~~Gv~~~~~~~~-------------------------------------~~----~ls~~ht~~did~~~~a~ 422 (433)
T PRK00615 384 TFYQSAFSKGVYLSPSPFE-------------------------------------AS----FLSSAHSMENLDYAQNVL 422 (433)
T ss_pred HHHHHHHHCCeeecCcccc-------------------------------------cc----ceecCCCHHHHHHHHHHH
Confidence 4667778889887643210 01 233445999999999999
Q ss_pred HHHHhhc
Q psy16512 492 NQYFLQQ 498 (815)
Q Consensus 492 ~~~~~~~ 498 (815)
++++.+-
T Consensus 423 ~~~~~~~ 429 (433)
T PRK00615 423 IDSLEKV 429 (433)
T ss_pred HHHHHHH
Confidence 9987654
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-08 Score=113.61 Aligned_cols=345 Identities=12% Similarity=0.106 Sum_probs=196.7
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... ...... ..++-+++++.+....+ .+.|++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~--~v~f~~SG 122 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIG--YTHSER----AIRVAEKLAEISPIENP--KVLFGLSG 122 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccC--ccCCHH----HHHHHHHHHhhCCCCcC--EEEEeCch
Confidence 4456777643 2334577888888777642211111 111122 45677777777653323 49999999
Q ss_pred hhhHHHHHhhhccCCCc--EEEecCC-CcchhhHHHHhhc-----cc---------eEEcCchhh--------hcchhhh
Q psy16512 134 TSAIKTVSEYFEFNEGS--FIYLTDN-HTSVLGMRELVKT-----NQ---------IYSFSVDDA--------RNMLNEF 188 (815)
Q Consensus 134 t~al~~~~~al~~~~gd--vv~~~~~-h~s~~~~~~~~~~-----~g---------~v~~~~~~~--------~~~~~~~ 188 (815)
++|++.++.....-.|. ||..... |........+... .+ .+|...... .+.+...
T Consensus 123 sEA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T PRK05639 123 SDAVDMAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELI 202 (457)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHH
Confidence 99999888765432343 6655544 4333333222110 11 122111000 0111111
Q ss_pred h-hhhhhhhh------cCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC
Q psy16512 189 K-ESQENVEN------MRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN 256 (815)
Q Consensus 189 ~-~l~~~~~~------~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~ 256 (815)
+ .+..++.. ...++.+|++.-+....|.+.| +++|.++|+ ++|+++|+|+++. +|..
T Consensus 203 ~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~-----------~~g~llI~DEv~tG~Grt 271 (457)
T PRK05639 203 NRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLD-----------EHGILLVMDEVQTGIGRT 271 (457)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhccCcC
Confidence 0 11111111 1346889999888888888776 445777777 9999999999876 2211
Q ss_pred C----CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 257 M----LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 257 ~----~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
- .+.-...||+++ +.|.+++-.++|++++++++.+.. .+.. ......|.
T Consensus 272 G~~~a~~~~gv~PDiv~--~gK~l~gG~pi~av~~~~~i~~~~-----~~~~--------------------~~T~~g~p 324 (457)
T PRK05639 272 GKWFASEWFEVKPDLII--FGKGVASGMGLSGVIGRKELMDLT-----SGSA--------------------LLTPAANP 324 (457)
T ss_pred chHHHHHhcCCCCCEEE--echhhcCCCcceeEEehHHHHhhc-----CCCc--------------------ccCCCcCH
Confidence 0 111123689888 689877433479999988876521 1100 00112455
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--ccCH
Q psy16512 333 LAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT--YYGY 410 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--~~~~ 410 (815)
.+.++..++++.+.+. ...++..++.++|.+.|+++... .+.+.-+ ...|.++.+.+...... .-..
T Consensus 325 ~~~aaa~a~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~~~~V--------rG~Gl~~gve~~~~~~~~~~~~~ 393 (457)
T PRK05639 325 VISAAAEATLEIIEEE-NLLKNALKVGEFIKKRLLEMKES--FEVIGDV--------RGKGLMIGVEIVKENGKPDPELT 393 (457)
T ss_pred HHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHHHHHh--CCCEEee--------ccceeEEEEEEecCCCCCCHHHH
Confidence 6667777778777654 12377777888888888775210 0211111 23467777776432111 0012
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.+.++|+.+... +.....+|+++.+..|++|++.++++
T Consensus 394 ~~~~~~~~~~Gv~~~~~-------------------------------------g~~~~~lr~~Ppl~it~~~id~~~~~ 436 (457)
T PRK05639 394 GKICWRAFELGLILPSY-------------------------------------GMFGNVIRITPPLVITKEIAEKGLEI 436 (457)
T ss_pred HHHHHHHHhCCeEEeec-------------------------------------CCCCCEEEEeCCCccCHHHHHHHHHH
Confidence 34667778899998532 01126899999999999999999999
Q ss_pred HHHHHhhc
Q psy16512 491 LNQYFLQQ 498 (815)
Q Consensus 491 L~~~~~~~ 498 (815)
|++.+.+-
T Consensus 437 l~~~l~~~ 444 (457)
T PRK05639 437 MERAIKDA 444 (457)
T ss_pred HHHHHHHH
Confidence 99988653
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-08 Score=112.31 Aligned_cols=337 Identities=10% Similarity=0.051 Sum_probs=191.0
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+.+.+++.+++....+.... ...... ..++-++++++++..-+ .+.|+++++
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~--~v~f~~sGs 115 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFG--GFTHKP----AIELCQKLVKMTPNALD--CVFLADSGS 115 (427)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccc--ccCCHH----HHHHHHHHHhhCCCCCC--EEEEeCCcH
Confidence 455666543 2345577888887776542211111 011122 45666777777653333 499999999
Q ss_pred hhHHHHHhhhcc------CCCc--EEEecCCCc-chhhHHHHhhc--------c---c---eEEcCch------hhhcch
Q psy16512 135 SAIKTVSEYFEF------NEGS--FIYLTDNHT-SVLGMRELVKT--------N---Q---IYSFSVD------DARNML 185 (815)
Q Consensus 135 ~al~~~~~al~~------~~gd--vv~~~~~h~-s~~~~~~~~~~--------~---g---~v~~~~~------~~~~~~ 185 (815)
+|++.++..... .+|. +|.....|. ........... . + .++.... ...+.+
T Consensus 116 eA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 195 (427)
T TIGR00508 116 VAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAIT 195 (427)
T ss_pred HHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHH
Confidence 998888775431 1233 666555443 33222221110 0 0 1111000 011222
Q ss_pred hhhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC---
Q psy16512 186 NEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--- 256 (815)
Q Consensus 186 ~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--- 256 (815)
.+++.+. ...++..+|++..+ +...|...+ +++|.++|+ ++|+++|+|++|. +|..
T Consensus 196 ~l~~~l~----~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~-----------~~~~llI~DEv~tG~Gr~G~~ 260 (427)
T TIGR00508 196 PLAKLME----LHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCK-----------QYDILLIADEIATGFGRTGKL 260 (427)
T ss_pred HHHHHHH----hcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCCcc
Confidence 3333221 11245678888875 555565443 555677777 9999999999973 2221
Q ss_pred -CCCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 257 -MLDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 257 -~~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
..+.....+|+++ +.|.+++- .-++.++.++++.+.+.....+. . ........|..+
T Consensus 261 ~~~~~~~v~pDi~~--~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~-~------------------~~~~T~~g~p~~ 319 (427)
T TIGR00508 261 FACEHAGVVPDILC--VGKALTGGYMTLSATVTTDKVAQTISSGEAGC-F------------------MHGPTFMGNPLA 319 (427)
T ss_pred chhhhcCCCCCEEE--echhhhcCcccceEEEEcHHHHHHHhcCCCCc-c------------------ccCCCCCcCHHH
Confidence 1111234688876 68977621 11577777777665543210000 0 000011235677
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
++++.++++.+.+. ...++.+++.+++.+.|+++.. .+.+.- ....+.++.+.+.+.. ....+.
T Consensus 320 ~aaa~a~l~~l~~~-~~~~~~~~~~~~l~~~L~~l~~---~~~i~~--------vrg~G~~~~i~~~~~~----~~~~~~ 383 (427)
T TIGR00508 320 CAVAEASLAILLEG-EWQKQVSAIENQLKRELSPLRK---NPVVKD--------VRVLGAIGVVEMYKPV----NVEELQ 383 (427)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhhc---CCCEEe--------EeccccEEEEEECCcc----CHHHHH
Confidence 77777888887654 2238889999999999987621 122211 1234788888885321 224578
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.+... ...+|+++..-.|++||++++++|++.
T Consensus 384 ~~l~~~Gv~~~~~----------------------------------------~~~l~~~ppl~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 384 KKFVEQGVWIRPF----------------------------------------GKLIYVMPPYIITTEQLQKLTAALIEA 423 (427)
T ss_pred HHHHHCCeEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 8888999988531 146999999889999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
+.+
T Consensus 424 l~~ 426 (427)
T TIGR00508 424 LHE 426 (427)
T ss_pred Hhc
Confidence 754
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.9e-09 Score=108.10 Aligned_cols=294 Identities=12% Similarity=0.121 Sum_probs=151.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHH--HHHhhhc---------cCCC-c--EEEecCCCcchhhHHHHhhccc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIK--TVSEYFE---------FNEG-S--FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~--~~~~al~---------~~~g-d--vv~~~~~h~s~~~~~~~~~~~g 172 (815)
+.++|+.+++++|+++++ |+...|++-.++ .+..++. |... . ++++.+. +-+=..+++..|
T Consensus 71 ipe~r~l~a~llgv~~~~--viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPG---YDRHFai~E~~G 145 (425)
T PF12897_consen 71 IPEARELFAELLGVPPEN--VIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPG---YDRHFAITEHFG 145 (425)
T ss_dssp -HHHHHHHHHHHTS-GGG--EEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES-----HHHHHHHHHCT
T ss_pred hHHHHHHHHHHhCCCHHH--EEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCC---chHHHHHHHhhC
Confidence 889999999999999998 877766654432 2222221 2122 2 8888844 444455667778
Q ss_pred --eE--EcCchhhhcchhhhhhhhhhhhhcCCC-ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEE
Q psy16512 173 --IY--SFSVDDARNMLNEFKESQENVENMRHS-NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLL 247 (815)
Q Consensus 173 --~v--~~~~~~~~~~~~~~~~l~~~~~~~~~~-t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~viv 247 (815)
.+ |..++ ..|.+.+++.+. .++. ..+.+++.-+||||..++-+-+.+++.- . ....+..++.
T Consensus 146 iemi~VpM~~d-GPDmD~Ve~LV~-----~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m--~-----~AA~DFRI~W 212 (425)
T PF12897_consen 146 IEMIPVPMTED-GPDMDMVEELVA-----EDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAM--K-----TAAPDFRIFW 212 (425)
T ss_dssp -EEEEEEEETT-EE-HHHHHHHTH-----TSTTEEEEEE-SSS-TTT-----HHHHHHHHHS---------SSTT-EEEE
T ss_pred cEEEecCCCCC-CCCHHHHHHHHh-----cCCccceEEeCCCccCCCCccCCHHHHHHHhcC--C-----cCCcCeEEEe
Confidence 44 44443 456777766442 2344 4688999999999999999998888861 1 1268999999
Q ss_pred ecccccCCCCCCC--CC-----------CCCc--EEEEcccc-ccccCCcceEEEEecccccccCcccccCceEEEEecC
Q psy16512 248 DAATYCGSNMLDL--KQ-----------HQPD--FISISFYK-MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMAN 311 (815)
Q Consensus 248 D~a~~~g~~~~dl--~~-----------~~~D--~vv~S~~K-~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 311 (815)
|.|+++-+..-+. .. -.+| ++..|.+| +|. -.|++++..+++-++.++..+.....
T Consensus 213 DNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~-GaGva~~aaS~~Nl~~~~~~~~~~tI------- 284 (425)
T PF12897_consen 213 DNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFP-GAGVAFFAASEANLAWIKKHLSVQTI------- 284 (425)
T ss_dssp E-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-T-TSS-EEEEE-HHHHHHHHHHHHHH-S-------
T ss_pred ecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccC-CcceeeeecCHHHHHHHHHHhcCcee-------
Confidence 9997776541111 11 1244 66679999 555 45788888887766544322210000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhHHHHHHH-----------HHHHHHHHH-hccccCCCCcE
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSFTNAFEL-----------SQYTYFYFK-QLSYSNGQPLV 378 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~~~~~~l-----------~~~l~~~L~-~l~~~~~~p~~ 378 (815)
.++-.+.+.- .+++.... .-.+|.++- .+.|.+.|. .. ...
T Consensus 285 -----------------gpdKvNQLRH---vrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~------~ia 338 (425)
T PF12897_consen 285 -----------------GPDKVNQLRH---VRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL------GIA 338 (425)
T ss_dssp --------------------HHHHHHH---HHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG------TSE
T ss_pred -----------------CccHHHHHHH---HHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC------Cee
Confidence 1122222222 23333222 111222222 233444444 32 345
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
+...|.+ |.+++|.+.+..+ ..+.+++.+.||.+.+ |..+..+.. +
T Consensus 339 ~Wt~P~G-------GYFIsld~~~G~A-----krvV~lakeAGV~LT~AGAtfPyg~D-------P-------------- 385 (425)
T PF12897_consen 339 SWTKPKG-------GYFISLDVLDGTA-----KRVVELAKEAGVALTPAGATFPYGKD-------P-------------- 385 (425)
T ss_dssp EE---SB-------SS-EEEEESTT-H-----HHHHHHHHHTTEE---TTTTSGGG---------T--------------
T ss_pred EecCCCC-------ceEEEEecCCChH-----HHHHHHHHHhCceeCCCCCCCCCCCC-------C--------------
Confidence 5555655 8899999886443 3588999999999876 443322211 1
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
....||++..+ -+.+|++..++.+.-++
T Consensus 386 ---------~D~nIRiAPS~-P~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 386 ---------RDSNIRIAPSY-PSLEELETAMDVFATCV 413 (425)
T ss_dssp ---------TS-EEEE--SS-S-HHHHHHHHHHHHHHH
T ss_pred ---------CCCcEEecCCC-CCHHHHHHHHHHHHHHH
Confidence 14789999984 57899999999887654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.5e-08 Score=111.00 Aligned_cols=349 Identities=13% Similarity=0.094 Sum_probs=196.9
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... . .... ..++.++|.++++.. + .+.|++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~-~~~~----~~~lae~l~~~~~~~-~--~v~f~~sG 114 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPLT--Q-SHEP----AIKLAEKLNEWLGGE-Y--VIFFSNSG 114 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCccccc--c-CCHH----HHHHHHHHHHhCCCC-C--EEEEeCCc
Confidence 4556777543 2344588888887777643221111 0 1112 456777777877542 2 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhc-----------cceEEcCchhh------------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKT-----------NQIYSFSVDDA------------ 181 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~-----------~g~v~~~~~~~------------ 181 (815)
++|++.++..... ++|. ||.....|.. .......... .+...+...+.
T Consensus 115 seA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (451)
T PRK07678 115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIY 194 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHH
Confidence 9999888776531 1243 6655544333 2222221110 01111111100
Q ss_pred --hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-ccC
Q psy16512 182 --RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCG 254 (815)
Q Consensus 182 --~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g 254 (815)
...+.+++.+ .....++..+|++.-+....|.+.| ++++.++|+ ++|+++|+|+++ ++|
T Consensus 195 ~~~~~~~l~~~~---~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~-----------~~g~llI~DEV~tGfG 260 (451)
T PRK07678 195 DLECVKEIDRVM---TWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQ-----------KHGALLISDEVICGFG 260 (451)
T ss_pred HHHHHHHHHHHH---HhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeehhhcCC
Confidence 0011112211 1112346889999888877888877 556777787 999999999987 344
Q ss_pred CC--C--CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SN--M--LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~--~--~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
.. . ...-...||++++ .|.+|+-. -+|++++++++.+.+.+.... +. + ......+
T Consensus 261 RtG~~~~~~~~gv~PDivt~--gK~lggG~~Pi~av~~~~~i~~~~~~~~~~-~~---------~--------~h~~T~~ 320 (451)
T PRK07678 261 RTGKAFGFMNYGVKPDIITM--AKGITSAYLPLSATAVKKEIYEAFKGKGEY-EH---------F--------RHVNTFG 320 (451)
T ss_pred cCchhHHHHhcCCCCCEEEe--ecccccCCcceeEEEEcHHHHHHHhccCcc-cc---------c--------ccCCCCC
Confidence 31 1 1112235898755 79777321 178999998887655321000 00 0 0011123
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Cc
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TY 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~ 407 (815)
-|..++++..++++.+.+. ...++..++.++|.+.|+++.. ..+.+.-+ ...|.++.+.+..... ..
T Consensus 321 gnp~~~aaa~a~l~~l~~~-~~~~~~~~~g~~l~~~l~~~~~--~~~~v~~v--------rg~Gl~~~i~~~~~~~~~~~ 389 (451)
T PRK07678 321 GNPAACALALKNLEIMENE-NLIERSAQLGELLLEQLKEELG--EHPLVGDI--------RGKGLLVGIELVNDKETKEP 389 (451)
T ss_pred cCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHh--cCCCEEEE--------EeeceEEEEEEecCCcccCc
Confidence 5667777777888887654 2237888888888888865410 01222111 2347777887753211 00
Q ss_pred cC---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YG---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
.+ ...+.+.+.++||.+.......+ .....+|+++.+..|++||
T Consensus 390 ~~~~~a~~i~~~l~~~Gv~~~~~g~~v~---------------------------------~~~~~lrl~Ppl~it~~ei 436 (451)
T PRK07678 390 ADNDKVASVVAACKEKGLIIGKNGDTVA---------------------------------GYNNVLTLSPPLVISSEEI 436 (451)
T ss_pred CchHHHHHHHHHHHHCCcEEeecCcccc---------------------------------CCCCEEEEECCCcCCHHHH
Confidence 01 23466778889998854210000 0026799999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
++++++|.+.+.
T Consensus 437 d~~~~~l~~~l~ 448 (451)
T PRK07678 437 AFIVGTLKTALE 448 (451)
T ss_pred HHHHHHHHHHHH
Confidence 999999998874
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.2e-08 Score=109.75 Aligned_cols=343 Identities=13% Similarity=0.105 Sum_probs=195.9
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+.-.+.+.+++.+++....+..... ..... ..++-++|++.++...+ .+.|++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~--~~~~~----~~~lAe~L~~~~p~~~~--~v~f~~sG 123 (453)
T PRK06943 52 DGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAG--CTHEP----AIELAERLAALTGGTLG--HAFFASDG 123 (453)
T ss_pred CCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccc--cCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCC
Confidence 3456777543 34456888888888776432211111 11122 44667777777654323 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhcc------c-------eEEcCch-h----------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKTN------Q-------IYSFSVD-D---------- 180 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~~------g-------~v~~~~~-~---------- 180 (815)
|+|++.++..... .+|. ||.....|.. ........... + .++.... .
T Consensus 124 seAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 203 (453)
T PRK06943 124 ASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADV 203 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHH
Confidence 9999888876520 1233 6666554433 22222211110 0 1111100 0
Q ss_pred -hhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 181 -ARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
..+++.+++.+. ...++..+|++.- +....|...| ++++.++|+ +||+++|+|+++. +
T Consensus 204 ~~~~~~~l~~~l~----~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~-----------~~gillI~DEV~TG~ 268 (453)
T PRK06943 204 AARALADVRRLFA----ERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCD-----------RYGVHLIADEIAVGC 268 (453)
T ss_pred HHHHHHHHHHHHH----hCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHH-----------HcCCEEEeechhhCC
Confidence 011122222221 1234578888887 4777788766 445677777 9999999999864 4
Q ss_pred CCCC--C--CCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNM--L--DLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~--~--dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
|..- + +.-...||++++ .|.+++-. -+|++++++++.+.+.+....+. + ......
T Consensus 269 GRtG~~fa~~~~gv~PDivt~--gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~----------~--------~~~~T~ 328 (453)
T PRK06943 269 GRTGTFFACEQAGVWPDFLCL--SKGISGGYLPLSLVLSRDAIFAAFYDDDVTRG----------F--------LHSHSY 328 (453)
T ss_pred CCCcchhHHHhCCCCCCeEee--ehhhccCcccceEEEEcHHHHHhhcccCccCC----------c--------cCCCCC
Confidence 3211 1 111235899877 58666321 27889999887655431100000 0 000011
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-CCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK-DGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~-~~~~ 407 (815)
+-|..+.++..+.++.+.+.+ -.+++.++-+++.+.|+++.. .+.+.-+ ...|.++.+.+... +...
T Consensus 329 ~gnpl~~aaa~a~L~~i~~~~-l~~~~~~~G~~l~~~L~~l~~---~~~v~~v--------rG~Gl~~gvel~~~~~~~~ 396 (453)
T PRK06943 329 TGNPLACRAALATLDLFAEDD-VLARNARKSARLRAALAPLAA---HPQVRHL--------RQRGTIFAFDVALDGDAAR 396 (453)
T ss_pred CCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhc---CCCEEeE--------eccccEEEEEEccCCCcch
Confidence 246677777778888877541 238888888888888877621 1333312 23477888887522 1110
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
--...+.+.+.++||.+... .+.+|+++.+-.|++||+++
T Consensus 397 ~~~~~i~~~~~~~Gll~~~~----------------------------------------g~~l~~~Ppl~it~~eid~~ 436 (453)
T PRK06943 397 TFSRRFFEAALERELLLRPI----------------------------------------GTTVYLMPPYVLDDDEIAWL 436 (453)
T ss_pred HHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCcCCHHHHHHH
Confidence 00234667778899987531 14699998888999999999
Q ss_pred HHHHHHHHhh
Q psy16512 488 LSFLNQYFLQ 497 (815)
Q Consensus 488 v~~L~~~~~~ 497 (815)
+++|++.+.+
T Consensus 437 ~~~l~~al~~ 446 (453)
T PRK06943 437 AERTRATLDA 446 (453)
T ss_pred HHHHHHHHHH
Confidence 9999998754
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-08 Score=120.65 Aligned_cols=342 Identities=12% Similarity=0.102 Sum_probs=201.1
Q ss_pred chhhhhhhhcc----cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 60 KDICYLDYTGA----GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 60 ~~~iyLd~a~~----~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
++..|+|..+. +--.+++.+++.+++..... + .. . .... ..++.+++++++....+ .++|++++++
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~-~-~~-~-~~~~----~~elae~L~~~~p~~~~--~v~f~~SGsE 652 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNT-N-SR-F-HYAA----VAEFSERLAALAPDGLD--TVFLVNSGSE 652 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccc-c-cc-c-cCHH----HHHHHHHHHHhCCCCcC--EEEEeCCchH
Confidence 34566665432 23457788888777754211 1 11 1 1122 56777888888742223 3999999999
Q ss_pred hHHHHHh---hhccCCCcEEEecCC-CcchhhHHHHhhc-----------c-ceEEcCchh--h--h---c-----chhh
Q psy16512 136 AIKTVSE---YFEFNEGSFIYLTDN-HTSVLGMRELVKT-----------N-QIYSFSVDD--A--R---N-----MLNE 187 (815)
Q Consensus 136 al~~~~~---al~~~~gdvv~~~~~-h~s~~~~~~~~~~-----------~-g~v~~~~~~--~--~---~-----~~~~ 187 (815)
|+..++. ++. .+.++|..... |............ . +..++...+ . + + .+.+
T Consensus 653 A~e~AlklAr~~t-gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~ 731 (972)
T PRK06149 653 ANDLAIRLAWAAS-GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDV 731 (972)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHH
Confidence 9998887 343 33346666544 4333222111110 0 011111000 0 0 0 1222
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccc-ccCCCCC---C
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCGSNML---D 259 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g~~~~---d 259 (815)
+..+..+. ....++.+|++..+....|.+.| +++|.++|+ ++|+++|+|+++ ++|..-- -
T Consensus 732 ~~~l~~~~-~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~-----------~~g~llI~DEV~tGfGRtG~~~~a 799 (972)
T PRK06149 732 VAQLEELD-ASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVR-----------ARGGVCIADEVQVGYGRLGHYFWG 799 (972)
T ss_pred HHHHHHHh-hcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEeehhcCCccCccchh
Confidence 22222111 11245788999888888899988 888899998 899999999997 4443211 1
Q ss_pred C--CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 L--KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 l--~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
. ....+|++ ++.|.+|+-.-+|++++++++.+.+.+. +. .+....-|..+.++
T Consensus 800 ~e~~gv~PDiv--t~gK~lg~G~Pl~av~~~~~i~~~~~~~----~~-------------------~~sT~~gnP~~~aa 854 (972)
T PRK06149 800 FEQQGVVPDII--TMAKGMGNGHPLGAVITRREIAEALEAE----GY-------------------FFSSTGGSPVSCRI 854 (972)
T ss_pred hhhcCCCCCEE--EecccccCCeeeEEEEEcHHHHhhhccC----Cc-------------------ccCCCCCCHHHHHH
Confidence 1 12358987 5689777322279999998887655321 00 01111346677777
Q ss_pred HHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Cc--cCHHH
Q psy16512 338 LKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TY--YGYSE 412 (815)
Q Consensus 338 l~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~--~~~~~ 412 (815)
..+.++.+.+. .. ++.+++-+++.+.|+++.- ..|.+..+ ...|.++.+.+..... .. -....
T Consensus 855 ala~L~~i~~e--~l~~~~~~~G~~l~~~L~~l~~--~~~~i~~v--------rG~Gl~~gvel~~~~~~~~~~~~~~~~ 922 (972)
T PRK06149 855 GMAVLDVLREE--KLQENARRVGDHLKARLEALAD--RHPLIGAV--------HGMGLYLGVELVRDRQTLEPATEETAA 922 (972)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEE--------eecceEEEEEEecCcccCCCChHHHHH
Confidence 77888887654 33 7788888888888877620 01322222 2347788888753211 00 01234
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.+.++||.+.+. |...++|||...+..|++|++.++++|+
T Consensus 923 i~~~l~~~Gvl~~~~-------------------------------------g~~~~vl~~~Ppl~it~~~id~~~~~l~ 965 (972)
T PRK06149 923 ICDRLLELGVIMQPT-------------------------------------GDHLNILKIKPPLCLDRESADFFVDMLD 965 (972)
T ss_pred HHHHHHhCCeEEeec-------------------------------------CCCCCEEEEECCCcCCHHHHHHHHHHHH
Confidence 667778899998642 1113689999998899999999999999
Q ss_pred HHHhhc
Q psy16512 493 QYFLQQ 498 (815)
Q Consensus 493 ~~~~~~ 498 (815)
+.+.+.
T Consensus 966 ~~l~~~ 971 (972)
T PRK06149 966 RVLTEG 971 (972)
T ss_pred HHHHhh
Confidence 988643
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=115.38 Aligned_cols=206 Identities=14% Similarity=0.139 Sum_probs=125.9
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv 269 (815)
..++.+|+++.+....|.+.| +++|.++|+ ++|+++|+|+++. +|.. ..+.....||+++
T Consensus 216 ~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~ 284 (431)
T TIGR03251 216 PHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCD-----------EHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVA 284 (431)
T ss_pred CCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecchhccCccchHHHHHhcCCCCCEEE
Confidence 356889999989888898764 555777777 9999999999976 4432 1122234689986
Q ss_pred EccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 270 ISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 270 ~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
+ .|.+ | ..|++ ..+++.+..... +.+.. ......+.|..+.++..++++.+.+.+
T Consensus 285 ~--gK~~--~-~~g~~-~~~~i~~~~~~~-~~~~~------------------~~~~T~~gnpl~~aaa~a~L~~l~~~~ 339 (431)
T TIGR03251 285 F--GKKT--Q-VCGIM-AGRRVDEVADNV-FAVPS------------------RLNSTWGGNLVDMVRATRILEIIEEER 339 (431)
T ss_pred e--cccC--c-cceEE-ecchHHHhhhhc-ccCcc------------------ccCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 4 5654 3 23444 333321111000 00000 001111346677778888888876542
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCcc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCH 429 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~ 429 (815)
..++++++.+++.+.|+++.. ..+++ +.. ....|.++.+.++.... ...+.+.|.++||.+.+..
T Consensus 340 -l~~~~~~~g~~l~~~L~~l~~--~~~~~--i~~-----vrg~G~~~~i~~~~~~~----~~~~~~~l~~~Gvl~~~~g- 404 (431)
T TIGR03251 340 -LVDNARVQGAHLLARLHELAA--EFPHL--VSN-----PRGRGLMCAFDLPSTAD----RDEVIRQLYREGVLLLGCG- 404 (431)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH--hCccc--eec-----ccccceeEEEEeCCHHH----HHHHHHHHHhCCeEEecCC-
Confidence 226777777777777766410 00211 111 12346777888753211 1246777889999985420
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
...+|+++++.+|++||++++++|.+
T Consensus 405 --------------------------------------~~~lr~~P~l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 405 --------------------------------------ERSIRFRPPLTVTREEIDAAIDAIRR 430 (431)
T ss_pred --------------------------------------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence 15699999999999999999999976
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.4e-08 Score=109.07 Aligned_cols=361 Identities=14% Similarity=0.073 Sum_probs=200.8
Q ss_pred cccCCCcceeeeccccccchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHH
Q psy16512 42 IKTKFGYHIIMVEGKNHLKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115 (815)
Q Consensus 42 v~t~fGyhIi~ved~~~~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la 115 (815)
+...-|.++... ++..|+|..+. +--.+.+.+++.+++....+.++.... ..+. ..++-++|+
T Consensus 36 i~~a~G~~l~D~------dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~-~~~~----~~~lAe~L~ 104 (461)
T PRK07482 36 VEGGEGIRITDA------QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTYVGH-GTEA----SITLSKRII 104 (461)
T ss_pred EEeeeeeEEEEC------CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCcccccccc-CCHH----HHHHHHHHH
Confidence 344455554443 34567776542 344588888888877653222211001 1122 456667777
Q ss_pred hHcCCCCCceeEEecCCchhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhh------ccc-----e--
Q psy16512 116 QYFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVK------TNQ-----I-- 173 (815)
Q Consensus 116 ~~~g~~~~~~~iv~t~g~t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~------~~g-----~-- 173 (815)
+.+...-+ .+.|++++|+|++.++..... .++. ||.....|.. ......... ..+ .
T Consensus 105 ~~~p~~~~--~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~ 182 (461)
T PRK07482 105 DRAPAGMS--KVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLH 182 (461)
T ss_pred HhCCCCcC--EEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEE
Confidence 77643233 389999999999988876531 1233 6655544333 222111111 111 1
Q ss_pred EEcCc--h----h-------hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhcccccccc
Q psy16512 174 YSFSV--D----D-------ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHF 236 (815)
Q Consensus 174 v~~~~--~----~-------~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~ 236 (815)
++... . + ..+++.+++.+ .....+++.+|++.-+....|.+.| +++|.++|+
T Consensus 183 ~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~-------- 251 (461)
T PRK07482 183 TEAPHYYRRADAGMSEEQFSAYCADELEELI---LAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK-------- 251 (461)
T ss_pred cCCCccccccccCCCHHHHHHHHHHHHHHHH---HhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH--------
Confidence 11110 0 0 00122222222 1111245788899888877788866 445777777
Q ss_pred ccCCCCeEEEEecccc-cCCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEec
Q psy16512 237 KCSRSNCFVLLDAATY-CGSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMA 310 (815)
Q Consensus 237 ~~~~~gi~vivD~a~~-~g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 310 (815)
+||+++|+|+++. +|-.- ...-...||++++ .|.+++-. -+|++++++++.+.+.......+.
T Consensus 252 ---~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~------ 320 (461)
T PRK07482 252 ---KYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITV--AKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGA------ 320 (461)
T ss_pred ---HhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEE--ccccccCccccceeeecHHHHHHHhcccccCCc------
Confidence 9999999998865 33211 1112235899885 69776321 268888888765544211000000
Q ss_pred CCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 311 NENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
+ ..-...+-|..+.++..++++.+.+. ...++.+++.+++.+.|+++.. .+|.+.-+ .
T Consensus 321 ---~--------~h~~T~~gnpl~~Aaa~a~L~~~~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~v~~v--------r 378 (461)
T PRK07482 321 ---I--------GHGWTYSGHPICAAAALANLDILERE-NLVGNAAEVGAYFRARLRAAFG--DHPLVGEV--------R 378 (461)
T ss_pred ---c--------ccCCCCCcCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHh--cCCCEEEE--------e
Confidence 0 00001134667777777888877654 1227888888888888876510 11222111 2
Q ss_pred cccceEEEEEecCCC--CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 391 YQGNIVNFNLLHKDG--TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 391 ~~~~i~~f~~~~~~~--~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
..|.++.+.+..... ...+ ...+...+.++||.++.+..
T Consensus 379 G~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~---------------------------------- 424 (461)
T PRK07482 379 GVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMPH---------------------------------- 424 (461)
T ss_pred eceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCC----------------------------------
Confidence 347788888753211 1111 13466777889988753210
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+.+.+..|++||++++++|++.+.+
T Consensus 425 ----~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~ 454 (461)
T PRK07482 425 ----GDILGFAPPLVLTRAEADEIVAIAKDAVDE 454 (461)
T ss_pred ----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 257999999899999999999999998754
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-08 Score=105.94 Aligned_cols=315 Identities=12% Similarity=0.059 Sum_probs=190.6
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchh-h---HHHHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATS-A---IKTVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~-a---l~~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
.+.++++++.+.-|.+. |.+.+++-+ + =.+++.++-...|+ +++++..|.+.-.-+.+++... .++
T Consensus 110 li~~Lq~~L~~ITG~Da----vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~ 185 (496)
T COG1003 110 LIYELQEWLKEITGMDA----VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVK 185 (496)
T ss_pred HHHHHHHHHHHhcCCce----eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEe
Confidence 38899999999999765 667655432 2 23344444333332 8888888977655555554444 777
Q ss_pred cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccc--
Q psy16512 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-- 252 (815)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-- 252 (815)
.+.++.+|+++++.++ .+++.++.+++||+- |.. -++.+|+++.| ++|..|..|+|..
T Consensus 186 ~~~~G~VDlddLk~k~-------~~~~AalMiTnPsT~-GvFE~~I~ei~~ivH-----------~~Gg~vY~DGANlNA 246 (496)
T COG1003 186 CDENGNVDLDDLRAKA-------EDNLAALMITNPSTL-GVFEEDIREICEIVH-----------EAGGQVYYDGANLNA 246 (496)
T ss_pred cCCCCCccHHHHHHHh-------ccceeEEEeccCccc-ccchhhHHHHHHHHH-----------HcCCEEEecCcchhh
Confidence 8888999999988743 478999999999876 554 57999999999 8999999999854
Q ss_pred -cCCCCCCCCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 253 -CGSNMLDLKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 253 -~g~~~~dl~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
+|.. ...+.+.|++=..+||+|+.|.| .|=+.++..++.-+...+.-.....+.... . .....-
T Consensus 247 ~vG~~--rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~---~-----~~~s~g 316 (496)
T COG1003 247 IVGLA--RPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDY---D-----GKKSIG 316 (496)
T ss_pred hhccc--cccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccC---C-----CCccce
Confidence 3322 22356899999999999998875 567777776654332111000000000000 0 000000
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhhh-H----HHHHHHHHHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEE
Q psy16512 327 DGTVNYLAIISLKYGFDTMEKKRKS-F----TNAFELSQYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l~~~~~~-~----~~~~~l~~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~ 400 (815)
.-..++-+...+..++.++..+|.. + +...-.++|+..+|+.. +.+ |.+.. ...+-.++..+.
T Consensus 317 ~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--------y~~~y~~~~---~~~HE~ild~r~ 385 (496)
T COG1003 317 VSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--------YPVPYTGEN---RVAHECILDARP 385 (496)
T ss_pred eeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--------CccccCCCC---cceeEEEeechH
Confidence 0112233333344566666665542 2 55566788888888753 333 22210 011122333331
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
. .....+...++.+.|..+|+..-+-+|.-. ..+.+-|=..---+
T Consensus 386 l-~~~~Gv~~~DvAKrLlD~GfHaPT~~FPli----------------------------------V~~tLMIEPTEsEs 430 (496)
T COG1003 386 L-KKETGVRALDVAKRLLDYGFHAPTMYFPLI----------------------------------VAGTLMIEPTESES 430 (496)
T ss_pred h-HhhcCCcHHHHHHHHHhcCCCCCcccCccc----------------------------------cccceeecCCCCCC
Confidence 1 112235567899999999988765544210 02455555554558
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q psy16512 481 WDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~~~ 499 (815)
.+++|+|+++|.++..+-.
T Consensus 431 k~eLDrf~dami~I~~Ea~ 449 (496)
T COG1003 431 KEELDRFIDAMIAIREEAD 449 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999998755433
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-07 Score=107.33 Aligned_cols=344 Identities=13% Similarity=0.140 Sum_probs=190.2
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeE-EecCC
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSV-IFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i-v~t~g 132 (815)
++..|+|..+ -+--.+.+.+++.+++....+.+.. ....+. ..++-++|++++......+.+ +++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~~~~~~f~~~s 110 (442)
T TIGR00709 37 EGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTL--DLTTPL----KDAFIEALLNIIPKRKMDYKLQFPGPS 110 (442)
T ss_pred CCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCcccc--ccCcHH----HHHHHHHHHHhCCCcCCCccEEEeCCC
Confidence 3456777643 2345578888888777642212211 111122 456667777776432111124 44689
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhh----ccc---------eEEcCchhhh--------cchh--
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVK----TNQ---------IYSFSVDDAR--------NMLN-- 186 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~----~~g---------~v~~~~~~~~--------~~~~-- 186 (815)
+++|++.++.....-.|. ||.....|.. ......... +.+ .++....... +.+.
T Consensus 111 GsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (442)
T TIGR00709 111 GADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASI 190 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHH
Confidence 999998887755422333 6666654433 333332221 011 1111100000 0011
Q ss_pred --hhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C
Q psy16512 187 --EFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M 257 (815)
Q Consensus 187 --~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~ 257 (815)
+++.+..+. ....++.+|++..+.+..|...| +++|.++|+ ++|+++|.|+++. +|.. .
T Consensus 191 ~~~~~~~~~~~-~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~-----------~~g~llI~DEV~tGfGRtG~~ 258 (442)
T TIGR00709 191 EYFENFIEDVE-SGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTR-----------KHDIKLILDEVQAGFGRSGTM 258 (442)
T ss_pred HHHHHHHHhhc-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCCCCch
Confidence 111111000 11134677777777777787754 444666777 9999999998865 3321 1
Q ss_pred CCC--CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 258 LDL--KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 258 ~dl--~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
... ....+|+++ +.|.+++-.-+|+++++++ .+.+.+... ....+.|..+.
T Consensus 259 ~a~~~~gv~PDiv~--~gK~l~~G~Pigav~~~~~-~~~~~~~~~------------------------~~T~~gnpla~ 311 (442)
T TIGR00709 259 FAFEHAGIEPDFVV--MSKAVGGGLPLAVLLIAPE-FDAWQPAGH------------------------TGTFRGNQLAM 311 (442)
T ss_pred hHHHHcCCCCcEEE--EcccccCCcccEEEEEchH-HhccCCCcC------------------------CCCCCcCHHHH
Confidence 111 123589888 6897773111889988877 333321100 01123566777
Q ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-------Cc
Q psy16512 336 ISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-------TY 407 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-------~~ 407 (815)
.++.++++.+.+. .. ++.+++.+++.+.|+++.. ..|.+.-+ ...|.++.+.+..... ..
T Consensus 312 aaa~a~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~--~~~~v~~v--------rG~Gl~~~ie~~~~~~~~~~~~~~~ 379 (442)
T TIGR00709 312 VTGTEALNYWKDD--NLAQNAQERGERITSFLDDMIK--EHPCIGNV--------RGRGLMQGIMIVDERQSKDATGAYP 379 (442)
T ss_pred HHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHH--hCCCeeee--------eccceEEEEEEccCcccccccccCC
Confidence 7777888877653 33 7888888999988887621 01222111 2347788887753211 00
Q ss_pred --c-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 --Y-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 --~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
. -...+...+.++||.+.+.. ...+.||+.+.+..|++|+
T Consensus 380 ~~~~~~~~~~~~~~~~Gvl~~~~~-------------------------------------~~~~~l~~~Ppl~it~~ei 422 (442)
T TIGR00709 380 RDCELAAAIQGACFENGLLLETGG-------------------------------------REGEVFRLLCPITIDQEEC 422 (442)
T ss_pred cchHHHHHHHHHHHHCCeEEeecC-------------------------------------CCCCEEEEECCCCCCHHHH
Confidence 0 02245666778999875421 1136899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy16512 485 KYFLSFLNQYFLQ 497 (815)
Q Consensus 485 ~~lv~~L~~~~~~ 497 (815)
+.+++++++.+.+
T Consensus 423 ~~~~~~l~~~l~~ 435 (442)
T TIGR00709 423 EEGISRFKQAVEE 435 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=107.62 Aligned_cols=337 Identities=15% Similarity=0.116 Sum_probs=193.5
Q ss_pred chhhhhhhhc-----ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 60 KDICYLDYTG-----AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 60 ~~~iyLd~a~-----~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
++..|+|..+ -+.-.+.+.+++.+++....+.. .. ...+. ..++.++|++++....+ .+.|+++++
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~--~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sGs 140 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSP-RR--FTNET----AIECAEKLTEIAGGELN--RVLFAPGGT 140 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCcc-Cc--cCCHH----HHHHHHHHHHhCCCCCC--EEEECCCcH
Confidence 3456667543 23355788888888776432211 11 11222 56788888888753323 399999999
Q ss_pred hhHHHHHhhhccCCC--cEEEecC-CCcchhhHHHHhhcc------c-------eEEcC--------chh---hhcchhh
Q psy16512 135 SAIKTVSEYFEFNEG--SFIYLTD-NHTSVLGMRELVKTN------Q-------IYSFS--------VDD---ARNMLNE 187 (815)
Q Consensus 135 ~al~~~~~al~~~~g--dvv~~~~-~h~s~~~~~~~~~~~------g-------~v~~~--------~~~---~~~~~~~ 187 (815)
+|+..++.....-.| .+|.... .|............. + .++.. ..+ ...++.+
T Consensus 141 eAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 220 (459)
T PRK06082 141 SAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL 220 (459)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence 999888765431123 3555544 344433332222110 0 11110 000 0011222
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC----CC
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM----LD 259 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~----~d 259 (815)
++.+. . ..+..+|++..+.+..+...| +++|.++|+ ++|+++|+|+++. +|..- ..
T Consensus 221 ~~~i~----~-~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~-----------~~g~llI~DEV~tG~GRtG~~fa~e 284 (459)
T PRK06082 221 EYVIE----K-EGGIGAFIAEAVRNTDVQVPSKAYWKRVREICD-----------KHNVLLIIDEIPNGMGRTGEWFTHQ 284 (459)
T ss_pred HHHHh----c-CCCEEEEEECCccCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCccchhhHhH
Confidence 22221 1 135778888888776433455 677888888 9999999999865 22210 11
Q ss_pred CCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.-...||+++ +.|.+++-. -+|.+++++++.+...... .. .....|.++.++.
T Consensus 285 ~~gv~PDiv~--~gKgl~gG~~P~~av~~~~~i~~~~~~~~-----------------------~~-~T~~gnpl~~aaa 338 (459)
T PRK06082 285 AYGIEPDILC--IGKGLGGGLVPIAAMITKDKYNTAAQISL-----------------------GH-YTHEKSPLGCAAA 338 (459)
T ss_pred hhCCCCCEEE--ecccccCCCCcceEEEEcHHHHhhccCCC-----------------------CC-CCCCcCHHHHHHH
Confidence 1123589886 689877321 1688888876542221000 00 1123466777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-ccC---HHHHH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-YYG---YSEVQ 414 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~~~---~~~v~ 414 (815)
.+.++.+.+. ...++..++.++|.+.|+++.. ..|.+.-+ ...|.++.+.+...... .-. ...+.
T Consensus 339 ~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~i~~v--------rG~Gl~~~ve~~~~~~~~~~~~~~~~~~~ 407 (459)
T PRK06082 339 LATIEVIEQE-GLLEKVKADSQFMRERLLEMKA--KYPLIGDV--------RGIGLLWGVELVTDRHTKERAYDEAEAVL 407 (459)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHh--hCCCeeee--------eeccceeEEEEccCccccCccHHHHHHHH
Confidence 7888887654 2338888999999998877621 01222111 23477888887532111 001 22355
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
..+.++|+.+.+.. .+.+|++..+..|++||+++++++++.
T Consensus 408 ~~~~~~Gvl~~~~~---------------------------------------~~~i~~~Ppl~it~~eid~~~~~l~~~ 448 (459)
T PRK06082 408 YRCLNNGLSFKVSQ---------------------------------------GNVIQLSPPLIITREELTQALAILEEA 448 (459)
T ss_pred HHHHhCCCEEEecC---------------------------------------CCEEEEeCCCccCHHHHHHHHHHHHHH
Confidence 66678898875310 267999999888999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
+.+
T Consensus 449 l~~ 451 (459)
T PRK06082 449 IAK 451 (459)
T ss_pred HHH
Confidence 754
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-08 Score=108.38 Aligned_cols=357 Identities=15% Similarity=0.130 Sum_probs=204.6
Q ss_pred CcccCCCcceeeeccccccchh--hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDI--CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~--iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~ 118 (815)
+++..-|-++...+..+-++.. .+..+ .+--.+++.+++.+++....+.++.... .+...++-++|+++.
T Consensus 29 ~i~~aeG~yl~d~~G~r~lDg~sg~W~~~--~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t------~~Pa~~LA~~L~~~a 100 (449)
T COG0161 29 VIVRAEGVYLTDIDGRRYLDGMSGLWCVN--HGHGRPEIAEAIKKQLDKLPHVMFGGFT------HEPAIELAEKLAELA 100 (449)
T ss_pred eeeecceeEEEeCCCCEEEecccHHHHhh--cCcCCHHHHHHHHHHHHhCCchhhcccC------CchHHHHHHHHHHhC
Confidence 5556667666655554433331 22222 3334577777887777765444443221 111456778888888
Q ss_pred C-CCCCceeEEecCCchhhHHHHHhhhcc------CCCc--EEEec-CCCcchhhHHHHhhccc--------------eE
Q psy16512 119 N-TDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS--FIYLT-DNHTSVLGMRELVKTNQ--------------IY 174 (815)
Q Consensus 119 g-~~~~~~~iv~t~g~t~al~~~~~al~~------~~gd--vv~~~-~~h~s~~~~~~~~~~~g--------------~v 174 (815)
. -+-+. |+|++|+|+|++.++.-..- ++.. +|.-. ..|.+.++......... .+
T Consensus 101 P~~~l~~--vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~ 178 (449)
T COG0161 101 PEGGLDH--VFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHL 178 (449)
T ss_pred CCCCccE--EEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceec
Confidence 7 32444 99999999998887764421 3333 33333 33554444333222110 11
Q ss_pred EcCc------hhh------hcchhhhhhhhhhhhhcC-CCccEEEEecccCC-CccccC----hHHHHHHhhcccccccc
Q psy16512 175 SFSV------DDA------RNMLNEFKESQENVENMR-HSNSLFVYPAESNF-SGTKYP----LSWCNTVHRNHVFKKHF 236 (815)
Q Consensus 175 ~~~~------~~~------~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~-tG~~~~----l~~I~~l~~~~~~~~~~ 236 (815)
+... .+. ...+.+++. ..... ++..++++.-+.-- .|.+.| ++++.++|+
T Consensus 179 ~~P~~y~~~~~~~~~~~~~~~a~~le~~----i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~-------- 246 (449)
T COG0161 179 PAPYAYRRGFFGEGDEEFAEAADELEAL----ILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICD-------- 246 (449)
T ss_pred CCCcccccCCCCCChHHHHHHHHHHHHH----HHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHH--------
Confidence 1110 000 112223322 22334 45677777766666 788877 556788888
Q ss_pred ccCCCCeEEEEeccc-ccCCC--CCCCC--CCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEec
Q psy16512 237 KCSRSNCFVLLDAAT-YCGSN--MLDLK--QHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMA 310 (815)
Q Consensus 237 ~~~~~gi~vivD~a~-~~g~~--~~dl~--~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~ 310 (815)
+||+++|.|+.. ++|-. .+-.+ ...||+++.+ |.+.+-. -+|.+++++++.+.+..-. .+
T Consensus 247 ---ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~~~~~~~--~~------- 312 (449)
T COG0161 247 ---KYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTGGYLPLSAVLTSDRIYEAFSDGD--AG------- 312 (449)
T ss_pred ---HcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeec--ccccccchhhHhHhhhHHHHHHHhccc--CC-------
Confidence 999999999763 33321 11111 2358998765 7544111 1788888888776543211 00
Q ss_pred CCcccccccCccccccCC---CCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 311 NENFHIKKDGLFEKFEDG---TVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~g---t~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
.|..| +-|..+.+++.+.|+.+++. .. ++.+++..++.+.|+++. .++|.+--+
T Consensus 313 -------------~f~HG~TYsghPlacAaAla~L~i~e~e--~l~~~~~~~~~~l~~~L~~~l--~~~p~VgdV----- 370 (449)
T COG0161 313 -------------AFMHGHTYSGNPLACAAALANLDILEEE--DLLERVAEIGAYLQAGLQAAL--ADHPLVGDV----- 370 (449)
T ss_pred -------------eeccCCccccCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhc--ccCCcEEEe-----
Confidence 12222 44556666666667766654 33 888899999999998730 111233222
Q ss_pred CCCCcccceEEEEEecCCCCcc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 387 GESKYQGNIVNFNLLHKDGTYY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~~~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
...|.+..+++........ -...+.+.+.++|+.+|+.
T Consensus 371 ---R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~---------------------------------- 413 (449)
T COG0161 371 ---RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPL---------------------------------- 413 (449)
T ss_pred ---eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeec----------------------------------
Confidence 2347777888764433210 0234677788999999863
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
+..+=++..+..|+++++++++++.+.+.+.
T Consensus 414 ------g~~i~~~PPliit~~eid~l~~~l~~al~~~ 444 (449)
T COG0161 414 ------GDVIYLMPPLIITREEIDELVDALREALDET 444 (449)
T ss_pred ------CCEEEEcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 1467788888899999999999999987543
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-07 Score=106.01 Aligned_cols=359 Identities=12% Similarity=0.085 Sum_probs=201.6
Q ss_pred cccCCCcceeeeccccccchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHH
Q psy16512 42 IKTKFGYHIIMVEGKNHLKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115 (815)
Q Consensus 42 v~t~fGyhIi~ved~~~~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la 115 (815)
+...-|.++... ++..|+|..+. +--.+.+.+++.+++....+..+.. ...... ..++-++|.
T Consensus 32 i~~a~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~-~~~~~~----~~~lae~L~ 100 (459)
T PRK05965 32 LASAKGATLTDA------SGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYF-HFGSEP----AIRLAAKLA 100 (459)
T ss_pred EEeeeEeEEEEC------CCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccccc-ccCCHH----HHHHHHHHH
Confidence 344455544433 34567776542 2345888888888776432211110 011122 446667777
Q ss_pred hHcCCCCCceeEEecCCchhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhc------cc-------e
Q psy16512 116 QYFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKT------NQ-------I 173 (815)
Q Consensus 116 ~~~g~~~~~~~iv~t~g~t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~------~g-------~ 173 (815)
+.+..+.+ .++|++++++|++.++..... +++. ||.....|.. .......... .+ .
T Consensus 101 ~~~p~~~~--~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~ 178 (459)
T PRK05965 101 ERAPGSLN--HVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHK 178 (459)
T ss_pred hhCCCCcC--EEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEE
Confidence 77643333 399999999999988875431 1333 6655554433 2222221110 11 1
Q ss_pred EEcCchhh----hc--------chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccc
Q psy16512 174 YSFSVDDA----RN--------MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFK 237 (815)
Q Consensus 174 v~~~~~~~----~~--------~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~ 237 (815)
++...... .+ ++.+++.+ .....++..+|++.-+....|.+.| ++++.++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i---~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~--------- 246 (459)
T PRK05965 179 IPSPYPYRNPVGDDPQAIIAASVAALRAKV---AELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACR--------- 246 (459)
T ss_pred cCCCcccccccCCChHHHHHHHHHHHHHHH---HhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHH---------
Confidence 11110000 01 11222222 1111245788899888888888776 444677777
Q ss_pred cCCCCeEEEEecccc-cCCC--CC--CCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecC
Q psy16512 238 CSRSNCFVLLDAATY-CGSN--ML--DLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMAN 311 (815)
Q Consensus 238 ~~~~gi~vivD~a~~-~g~~--~~--dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~ 311 (815)
+||+++|+|+++. +|-. .. +.-...||++++ .|.+++-. -+|++++++++.+.+.+.....+.
T Consensus 247 --~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~------- 315 (459)
T PRK05965 247 --ELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTV--AKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAP------- 315 (459)
T ss_pred --HcCCEEEEechhccCccCchhhhHhhcCCCCCeEEe--chhhccCCcceeEEEEcHHHHHHHhcccccccc-------
Confidence 9999999998865 3321 11 111235899876 58666321 278999998886554221000000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
+ ......+-|..+.++..++++.+++. ...++..++-+++.+.|+++. ..|.+.-+ ..
T Consensus 316 --~--------~h~~T~~gnpl~~Aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~l~~l~---~~~~v~~v--------rG 373 (459)
T PRK05965 316 --V--------GHGYTYSAHPVSAAVGLEVLRLYHEG-GLLANGQKAGPRFAAGLDALR---AHPLVGDV--------RG 373 (459)
T ss_pred --c--------cccCCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhhc---cCCCEEEE--------ee
Confidence 0 00011134567777777778877654 123888899999999998762 11322211 23
Q ss_pred ccceEEEEEecCCC--Ccc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 392 QGNIVNFNLLHKDG--TYY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 392 ~~~i~~f~~~~~~~--~~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
.|.++.+.+..... ... -...+.+.+.++||.++.. |
T Consensus 374 ~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~------------g------------------------ 417 (459)
T PRK05965 374 RGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF------------G------------------------ 417 (459)
T ss_pred cceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec------------C------------------------
Confidence 47778887753211 110 0234666778899988531 0
Q ss_pred CCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...||+.+.+..|++||++++++|.+.+.+
T Consensus 418 ---~~~i~~~PpL~it~~ei~~~~~~l~~~l~~ 447 (459)
T PRK05965 418 ---DGVLGFAPALCCTEGEFDLIFERTRKTLDD 447 (459)
T ss_pred ---CcEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 257999999989999999999999998864
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-07 Score=106.21 Aligned_cols=343 Identities=14% Similarity=0.092 Sum_probs=194.1
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+.-.+.+.+++.+++....+.+... ...... ..++.++|++++....+. +.|++++
T Consensus 48 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~----~~~lae~L~~~~p~~~~~--v~f~~SG 120 (456)
T PRK07480 48 EGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFF-KTTHPP----AIELAAKLAEVAPPGFNH--VFFTNSG 120 (456)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccc-ccCCHH----HHHHHHHHHHhCCCCcCE--EEEeCCc
Confidence 3456777643 23445788888888776432111110 011222 556777788877533333 9999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCC-CcchhhHHHHhh------ccc-----eEEcCchh---------h--h
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDN-HTSVLGMRELVK------TNQ-----IYSFSVDD---------A--R 182 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~-h~s~~~~~~~~~------~~g-----~v~~~~~~---------~--~ 182 (815)
++|++.++..... ++|. ||..... |........... ..+ ...+.... . .
T Consensus 121 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 200 (456)
T PRK07480 121 SEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEF 200 (456)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHH
Confidence 9999888875531 1333 5555443 433322211111 011 11111000 0 0
Q ss_pred -c--chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 183 -N--MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 183 -~--~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
+ .+.+++.+ .+....++.+|++..+....|...| +++|.++|+ +||+++|+|+++. +|
T Consensus 201 ~~~~~~~l~~~~---~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~-----------~~g~llI~DEV~tGfG 266 (456)
T PRK07480 201 GLAAARQLEAKI---LELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICR-----------KYDILLVADEVICGFG 266 (456)
T ss_pred HHHHHHHHHHHH---HhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCC
Confidence 0 12222111 1112245789999888888898887 666888888 9999999999874 43
Q ss_pred CCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
..- .+.....||+++ +.|.+++-. -+|++++++++.+.+.... + . + ......+
T Consensus 267 RtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi~av~~~~~i~~~~~~~~-~--~---------~--------~~~~T~~ 324 (456)
T PRK07480 267 RTGEWFGSQHFGIKPDLMT--IAKGLTSGYIPMGAVGVGDRVAEVLIEEG-G--E---------F--------NHGFTYS 324 (456)
T ss_pred cCcchhhhhhcCCCCCeee--eehhhccCCccceEEEEcHHHHHHHhcCC-C--C---------c--------ccCCCCC
Confidence 211 111223588765 479776310 1788888888765441000 0 0 0 0001113
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--C
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNA-FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--T 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~-~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~ 406 (815)
-|..+.++..++++.+.+.+ ..+++ .++.+++.+.|+++.. .|.+.-+ ...|.++.+.+..... .
T Consensus 325 gnpl~~Aaa~a~L~~l~~~~-l~~~~~~~~g~~l~~~l~~l~~---~~~i~~v--------rG~Glm~gie~~~~~~~~~ 392 (456)
T PRK07480 325 GHPVAAAVALANLRILRDEG-IVERVRDDTGPYLQKRLRELAD---HPLVGEV--------RGVGLVGAIELVKDKATRE 392 (456)
T ss_pred cCHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHhhc---CCCeeeE--------EeecceEEEEEeccccccc
Confidence 45677777778888876541 22777 5788888888877520 1221111 2347777887753211 1
Q ss_pred cc-C----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 407 YY-G----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 407 ~~-~----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.+ . ...+.+.+.++||.+... .+.+|+++.+..|+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------~~~l~~~Ppl~it~ 432 (456)
T PRK07480 393 RFEAGGGVGTICRDHCFANGLIMRAV----------------------------------------GDRMIISPPLVITH 432 (456)
T ss_pred cCcchhhHHHHHHHHHHHCCcEEeec----------------------------------------CCEEEEECCCCCCH
Confidence 11 0 124556677899887531 15699999988899
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
+||++++++|.+.+.+
T Consensus 433 ~eid~~~~~l~~al~~ 448 (456)
T PRK07480 433 AEIDELVEKARKALDA 448 (456)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-07 Score=104.91 Aligned_cols=361 Identities=15% Similarity=0.130 Sum_probs=199.7
Q ss_pred cccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHH
Q psy16512 42 IKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115 (815)
Q Consensus 42 v~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la 115 (815)
++..-|.++..+ ++..|+|..+ -+--.+.+.+++.+++....+..+.. ...... ..++-++|.
T Consensus 28 i~~a~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~-~~~~~~----~~~lae~L~ 96 (449)
T PRK07481 28 IVRGDGVYVYDI------DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFD-GTTHPR----AIELSYELI 96 (449)
T ss_pred EEeccccEEEeC------CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceeccc-ccCCHH----HHHHHHHHH
Confidence 344556554443 3456777543 23345778888877776422111110 011122 456777777
Q ss_pred hHcCCCCCceeEEecCCchhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhc-----------cceEE
Q psy16512 116 QYFNTDSDHYSVIFTSGATSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKT-----------NQIYS 175 (815)
Q Consensus 116 ~~~g~~~~~~~iv~t~g~t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~-----------~g~v~ 175 (815)
++++-. +...+.|++++++|++.++..... ++|. +|.....|.. .......... .+...
T Consensus 97 ~~~~~~-~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~ 175 (449)
T PRK07481 97 DMFAPE-GMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFH 175 (449)
T ss_pred HhcCCC-CCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEE
Confidence 777411 112499999999999888775431 1343 6666554433 2222211110 01111
Q ss_pred cCchhh-------hcchhhhhhh-hhhhhh----cCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccC
Q psy16512 176 FSVDDA-------RNMLNEFKES-QENVEN----MRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 176 ~~~~~~-------~~~~~~~~~l-~~~~~~----~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~ 239 (815)
+..... .+.+...+.+ ..++.. ..+++.+|++.-+....|.+.| ++++.++|+
T Consensus 176 ~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~----------- 244 (449)
T PRK07481 176 VETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCD----------- 244 (449)
T ss_pred eCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHH-----------
Confidence 111000 0111111111 111111 1245889999988888898876 566777888
Q ss_pred CCCeEEEEecccc-cCCC----CCCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCc
Q psy16512 240 RSNCFVLLDAATY-CGSN----MLDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 240 ~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
++|+++|+|+++. +|.. ....-...||+++. .|.+++-. -+|++++++++.+.+.+.....+
T Consensus 245 ~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~---------- 312 (449)
T PRK07481 245 RHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCL--AKGITSGYVPLGATMVNARIADAFEANADFGG---------- 312 (449)
T ss_pred HcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEE--eecccCCCcCceEEEEcHHHHHHHhccCcccc----------
Confidence 9999999998854 3321 11122335898776 69776311 17889998887655432110000
Q ss_pred ccccccCccccccCCC--CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 314 FHIKKDGLFEKFEDGT--VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
.....+| -|.++.++..+.++.+.+. ...++++++-+++.+.|+++.. ..|.+.-+ ..
T Consensus 313 ---------~~~h~~T~~gnpl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~i~~v--------rG 372 (449)
T PRK07481 313 ---------AIMHGYTYSGHPVACAAALATLDIVVRE-DLPANAAKRGAYLLEGLQPLKE--RFELVGDV--------RG 372 (449)
T ss_pred ---------ccccCCCCCCCHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhh--cCCCeEEE--------ee
Confidence 0011112 3566777777778777653 1237888888888888877621 01222111 23
Q ss_pred ccceEEEEEecCC--CCccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 392 QGNIVNFNLLHKD--GTYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 392 ~~~i~~f~~~~~~--~~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
.|.++.+.+.... ....+ ...+.+.+.++||.+++.
T Consensus 373 ~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------------------------------- 415 (449)
T PRK07481 373 KGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS------------------------------------- 415 (449)
T ss_pred cceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec-------------------------------------
Confidence 4677777775321 11111 234666677899887542
Q ss_pred CCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+|++..+..|++||+.++++|.+.+.+
T Consensus 416 ---g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 416 ---GTKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 135899988888999999999999998743
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.4e-07 Score=100.14 Aligned_cols=371 Identities=14% Similarity=0.117 Sum_probs=208.6
Q ss_pred HHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec----cccccchhhhhhhhcc------cccchhhHHHHHHHHhh-
Q psy16512 19 EFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE----GKNHLKDICYLDYTGA------GVYSQSQMNQTIEQLKE- 87 (815)
Q Consensus 19 ~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve----d~~~~~~~iyLd~a~~------~~~p~~v~~al~~~l~~- 87 (815)
-|++|-..+ +|-+..|++...++. ||-++-.. .+-+.++..|.|+... +--++.+.+++.+++.+
T Consensus 10 l~~~A~~~~-pGGvnspvra~~~v~---~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G 85 (432)
T COG0001 10 LFERAKKVI-PGGVNSPVRAFKSVG---GYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERG 85 (432)
T ss_pred HHHHHhhhC-CCCCCccccccCCCC---CCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhc
Confidence 366664444 566666776666654 22222111 1123345566666542 22347788888887765
Q ss_pred ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCCcEEEecCCCcchhhHH
Q psy16512 88 NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEGSFIYLTDNHTSVLGMR 165 (815)
Q Consensus 88 ~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~gdvv~~~~~h~s~~~~~ 165 (815)
..|+.|.. . .-++-+.|.+.+..- + .|-|++++|+|...+++...- .+..||....+|.....+.
T Consensus 86 ~~fg~Pte------~----Ei~~Aell~~~~p~~-e--~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~ 152 (432)
T COG0001 86 LSFGAPTE------L----EVELAELLIERVPSI-E--KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSL 152 (432)
T ss_pred CCCCCCCH------H----HHHHHHHHHHhcCcc-c--EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHH
Confidence 33555541 1 223446677777642 3 299999999998887765431 3333777666544433222
Q ss_pred HHhhccc----------eEEcCch------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH----HHHH
Q psy16512 166 ELVKTNQ----------IYSFSVD------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS----WCNT 225 (815)
Q Consensus 166 ~~~~~~g----------~v~~~~~------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~----~I~~ 225 (815)
-.....| -+|.+.. ..-|++.+++++ +...++...|++.-+....|.+.|.+ .+.+
T Consensus 153 lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~----~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~ 228 (432)
T COG0001 153 LVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAF----EEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRE 228 (432)
T ss_pred HhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHH----HHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHH
Confidence 2211111 0111100 011333444332 23345678888888888889998855 4677
Q ss_pred HhhccccccccccCCCCeEEEEecccccCCCCC----CCCCCCCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML----DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~----dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
+|+ ++|+++|.|++...-...+ +.-...+|+ .++-|..|+---+|++-.++++.+.+.|.-
T Consensus 229 lt~-----------e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDl--ttlGKiIGGGlP~ga~gGr~eiM~~~~p~g-- 293 (432)
T COG0001 229 LTE-----------EHGALLIFDEVITGFRVALGGAQGYYGVEPDL--TTLGKIIGGGLPIGAFGGRAEIMEQLAPLG-- 293 (432)
T ss_pred HHH-----------HcCcEEEEecchhhcccCCcccccccCcCcch--hhhhhhhcCCcceeeeccHHHHHhhhCCCC--
Confidence 777 9999999998755322211 111234676 456797773222788889999887664331
Q ss_pred CceEEEEecCCcccccccCccccccCCCC--ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTV--NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
.-+..||. |..++.|-.++++.+......+++..++.++|.+.|+++....+.| +.
T Consensus 294 ---------------------~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~g~~-~~ 351 (432)
T COG0001 294 ---------------------PVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERHGIP-LT 351 (432)
T ss_pred ---------------------CccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhCCC-eE
Confidence 12445554 4566666667777776543335788888888888876652222212 12
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCC--------Ccc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDG--------TYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~--------~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+. ..++++.+.+..... ... .+..+.+.+.++||.+.++.+
T Consensus 352 v~---------~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~--------------------- 401 (432)
T COG0001 352 VN---------RVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQF--------------------- 401 (432)
T ss_pred Ee---------eecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccc---------------------
Confidence 22 235666666654210 000 133455567788888865421
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...=+| ..++++||++.++++.+.+..
T Consensus 402 ------------------ea~flS--~ahte~di~~~~~a~~~~~~~ 428 (432)
T COG0001 402 ------------------EAGFLS--TAHTEEDIDRTLEAADEAFKE 428 (432)
T ss_pred ------------------cceeee--cccCHHHHHHHHHHHHHHHHH
Confidence 111223 335999999999999987653
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-07 Score=104.49 Aligned_cols=345 Identities=13% Similarity=0.095 Sum_probs=195.0
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..... ...+. ..++-+++++++....+ .+.|++++
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~--~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sG 116 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAG--FSHEP----VIELSERLVKITPPGLS--RCFYADNG 116 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccc--cCCHH----HHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 4566777643 23445778888877776422211111 11122 45666777776642223 49999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhcc-----------c--eEEcCch-----h------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKTN-----------Q--IYSFSVD-----D------ 180 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~~-----------g--~v~~~~~-----~------ 180 (815)
++|++.++..... .+|. +|.....|.. ........... + .+|.... +
T Consensus 117 sEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~ 196 (466)
T PRK07030 117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEH 196 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHH
Confidence 9999888776521 1233 6665554433 22222211110 0 1111100 0
Q ss_pred -hhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 181 -ARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
..+++.+++.+. ...++..+|++.- +....|.+.| ++++.++|+ ++|+++|+|+.+. +
T Consensus 197 ~~~~l~~le~~~~----~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~-----------~~g~llI~DEV~TGf 261 (466)
T PRK07030 197 SRRMFAHMEQTLA----EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACD-----------RYGVHLIHDEIAVGF 261 (466)
T ss_pred HHHHHHHHHHHHH----hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeehhhCc
Confidence 001122222221 1234578888887 5666788766 445777777 9999999998854 3
Q ss_pred CCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
|..- .+.-...||++++ .|.+++-. -+|++++++++.+.+.......+. + ......
T Consensus 262 GRtG~~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~---------~--------~h~~T~ 322 (466)
T PRK07030 262 GRTGTMFACEQAGIRPDFLCL--SKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRA---------F--------LHSHSY 322 (466)
T ss_pred CccccchHHHhcCCCCCEEee--ehhccCCcccceEEEecHHHHHHHhcccccccc---------c--------ccCCCC
Confidence 3211 1112335899877 68666321 278888998876544211000000 0 000011
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-- 406 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-- 406 (815)
+-|..+.++..+.++.+.+.+ -.++.+++-+++.+.|+++. ..|.+.-+ ...|.++.+.+......
T Consensus 323 ~gnpla~aaa~a~L~~i~~~~-l~~~~~~~G~~l~~~L~~l~---~~~~v~~v--------rG~Gl~~gie~~~~~~~~~ 390 (466)
T PRK07030 323 TGNPLACAAALATLDIFEQDN-VIENNRALARRMAEATAHLA---DHPHVAEV--------RQTGMILAIEMVQDKASKT 390 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHh---cCCCEEEe--------EeceeEEEEEeccCccccc
Confidence 346677777778888877541 23888889999999888762 11322212 23477788877532110
Q ss_pred cc--C---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 407 YY--G---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 407 ~~--~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.. + ...+.+.+.++|+.+++. ...+|+.+.+-.|+
T Consensus 391 ~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~~i~~~Ppl~it~ 430 (466)
T PRK07030 391 PYPWQERRGLKVYQHALERGALLRPL----------------------------------------GSVVYFLPPYVITP 430 (466)
T ss_pred cCcchhHHHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECCccCCH
Confidence 00 0 124666777899887531 14699998888999
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy16512 482 DDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 482 edi~~lv~~L~~~~~~~ 498 (815)
+||+.++++|++.+.+-
T Consensus 431 ~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 431 EQIDFLAEVASEGIDIA 447 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987653
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=104.36 Aligned_cols=313 Identities=13% Similarity=0.131 Sum_probs=183.5
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+.-.+.+.+++.+++....+..+. . ..+. ..++.++++++.+.+ . ++|++++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~--~-~~~~----~~~la~~l~~~~~~~--~--v~~~~SG 90 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPM--F-EHEE----KEEMLEELSKWVNYE--Y--VYMGNSG 90 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCC--c-CCHH----HHHHHHHHHhhcCCC--E--EEEeCch
Confidence 3456777543 2334477888888877653222221 1 1122 567778888887653 3 9999999
Q ss_pred hhhHHHHHhhhccCCC-c-EEEecCCCcc-hhhHHHHhhc----cceEEcCch----hhhcchhhhhhhhhhhhhcCCCc
Q psy16512 134 TSAIKTVSEYFEFNEG-S-FIYLTDNHTS-VLGMRELVKT----NQIYSFSVD----DARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 134 t~al~~~~~al~~~~g-d-vv~~~~~h~s-~~~~~~~~~~----~g~v~~~~~----~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
|+|++.++.......| + ||.....|.. .......... .++-|.-.+ ..-+.+.+++ .+.+++
T Consensus 91 seA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~-------~i~~~~ 163 (364)
T PRK04013 91 TEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKE-------AITKET 163 (364)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHH-------HhcCCc
Confidence 9999999887754445 4 6666654433 3232221111 111110000 0012233333 334578
Q ss_pred cEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc---CCC-CCCCCCCCCcEEEEcccc
Q psy16512 203 SLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSN-MLDLKQHQPDFISISFYK 274 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~-~~dl~~~~~D~vv~S~~K 274 (815)
++|++.......|...+ +++|.++|+ ++|+++|+|+++.. |.. ....-...||++++ .|
T Consensus 164 aAvivEpi~g~gG~~~~~~~yl~~lr~lc~-----------~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~--gK 230 (364)
T PRK04013 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTE-----------DVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTM--GK 230 (364)
T ss_pred EEEEEcCCcCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEe--cc
Confidence 99999988877777654 777888888 99999999998762 210 01112335888766 69
Q ss_pred ccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHH
Q psy16512 275 MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTN 354 (815)
Q Consensus 275 ~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~ 354 (815)
.+++-.-+|+++.+++.. +.. . .....-|..+.++..+.++.+++.+ -.++
T Consensus 231 ~lggG~P~~a~~~~~~~~----~~~-~-----------------------~~T~~gnp~~~aaa~a~l~~i~~~~-l~~~ 281 (364)
T PRK04013 231 GIGNGVPVSLTLTNFDVE----RGK-H-----------------------GSTFGGNPLACKAVAVTLRILRRER-LVEK 281 (364)
T ss_pred cccCCceeEEEEeccccc----CCC-c-----------------------CCCCCcCHHHHHHHHHHHHHHHhcc-HHHH
Confidence 776311167777765531 100 0 0111346677777778888877642 1133
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
.++. |.++.+ +.+.- ....|-++.+.+... ...+.+.+.++|+.+...
T Consensus 282 ~~~~-------l~~l~~----~~v~~--------vRG~Gl~~gve~~~~------~~~i~~~~~~~Gll~~~~------- 329 (364)
T PRK04013 282 AGEK-------FIEIKG----ERVVT--------TRGRGLMIGIVLKKP------VGKYVEELQNRGYLVHTA------- 329 (364)
T ss_pred HHHH-------HHHhcc----Cccee--------eeeCcEEEEEEeCCc------HHHHHHHHHhCCcEEeeC-------
Confidence 3332 223211 21111 134477888887532 124777788899988531
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
| .+.+|+.+.+..|++|++.++++|++.+.
T Consensus 330 ------------------------------g--~~vlr~~Ppl~it~~~i~~~~~~l~~~l~ 359 (364)
T PRK04013 330 ------------------------------G--QRVIRLLPPLIISKDTMEEAKSAIEGVIN 359 (364)
T ss_pred ------------------------------C--CCEEEEeCCcccCHHHHHHHHHHHHHHHH
Confidence 0 26799999999999999999999999874
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-08 Score=103.25 Aligned_cols=342 Identities=15% Similarity=0.170 Sum_probs=205.0
Q ss_pred ccchhhHHHHHHHHhhcc-ccCCCCh-hhhhhhhhhhHH-HHHHHHHhHcCCCCCceeEEe-cCCchhhHHHHHhhhccC
Q psy16512 72 VYSQSQMNQTIEQLKENI-FSHPHGN-SVLSDFCVSEID-QMRTKILQYFNTDSDHYSVIF-TSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~-~~np~s~-~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~~~~al~~~ 147 (815)
..+.++++++-..+.+.+ .+.|... +.-.+. -.+++ -++++..+.|+++++-|-|-+ .-+++-|+..+..++. +
T Consensus 51 Fts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~-ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYtall-~ 128 (477)
T KOG2467|consen 51 FTSRAVMEALGSCLTNKYSEGYPGARYYGGNEY-IDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYTALL-K 128 (477)
T ss_pred chHHHHHHHHhHHhhcccccCCCcccccCcchH-HHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHhhhc-C
Confidence 456778888777666432 3456555 222233 12233 356777889999998776633 3466679999999998 8
Q ss_pred CCc-EEEec---CCCcch---hhHHHHhhccc-----eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 148 EGS-FIYLT---DNHTSV---LGMRELVKTNQ-----IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 148 ~gd-vv~~~---~~h~s~---~~~~~~~~~~g-----~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
|++ +.-.+ ..|-+. ..-.++....- .+.+++ .+.+|.+.+++.. ..-++++++.-. +..
T Consensus 129 Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A------~~frPk~iiaG~--SaY 200 (477)
T KOG2467|consen 129 PHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTA------TLFRPKLIIAGT--SAY 200 (477)
T ss_pred CCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHH------HhcCCcEEEecc--ccc
Confidence 988 44333 233321 11111110000 234553 5678888887522 234577776532 344
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
-..+|.+.+.++|. +.|++++.|-||-.|. .|-+++ .+|+|+.+.||.+-+|.| |.++.|+
T Consensus 201 ~R~~DYaR~R~Iad-----------~~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPRg-~mIFyRk 266 (477)
T KOG2467|consen 201 SRLIDYARFRKIAD-----------KVGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPRG-AMIFYRK 266 (477)
T ss_pred hhhccHHHHHHHHH-----------hcCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCcc-eeEEEec
Confidence 57788999999999 8999999999886553 333332 589999999999888975 6777776
Q ss_pred ccccccCcccccCceEEEEecC--CcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMAN--ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFY 365 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~ 365 (815)
..-. ..+. .+........ -++.+ -..++.| |.-..+.++..||.....- ...+ +++.++++.|.+.
T Consensus 267 Gvk~-~~~k---~g~~i~ydlE~kINfaV-----FP~lQGG-PHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~ 336 (477)
T KOG2467|consen 267 GVKS-IKPK---QGKEILYDLEDKINFAV-----FPGLQGG-PHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASA 336 (477)
T ss_pred cCCc-CCCC---CCCcceechhhhhhhhc-----cccccCC-CCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 5421 1111 0110000000 00100 0123333 4447788888888765432 2233 8888999999999
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe--cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL--HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~--~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
|.++ |+++++... ..+++.+.+. +.++. .+.+.|+.-+|.+.--..+
T Consensus 337 l~~~-------Gy~lvtgGT------DnHlvLvDLr~~G~dGa-----rvE~vle~~~I~~NKNtvp------------- 385 (477)
T KOG2467|consen 337 LISR-------GYKLVTGGT------DNHLVLVDLRPKGVDGA-----RVEKVLELCHIALNKNTVP------------- 385 (477)
T ss_pred HHHc-------CceEecCCc------cceEEEEeccccCCchH-----HHHHHHHHhhhhhcCCcCC-------------
Confidence 9998 888886542 2466666654 33443 4788888878775432111
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHH
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYF 495 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~ 495 (815)
||.. ...++.||+.-...++ ++|.+++.+.|.+.+
T Consensus 386 -------------GD~S----al~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 386 -------------GDKS----ALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred -------------CCcc----ccCCCceeccchhhcccCccHHHHHHHHHHHHHHH
Confidence 1110 1235789998665553 688888888887654
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=110.30 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=127.6
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCC-cEEEecCCCcchhhH-HHHhhccc--eE--E
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEG-SFIYLTDNHTSVLGM-RELVKTNQ--IY--S 175 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~g-dvv~~~~~h~s~~~~-~~~~~~~g--~v--~ 175 (815)
-+.+-+.+..++++.|.+..+ .-+-.++|++-+.++.+... +.+ .++++...||..... ...+...| .+ +
T Consensus 109 Lq~lfe~Qs~i~eLTGmdvaN--aSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~ 186 (429)
T PF02347_consen 109 LQALFEYQSMICELTGMDVAN--ASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVP 186 (429)
T ss_dssp HHHHHHHHHHHHHHHTSSEE---SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-
T ss_pred HHHHHHHHHHHHHhhCCCccC--CCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEec
Confidence 344778999999999997544 45667888777766666542 222 399999999987653 33344445 33 3
Q ss_pred cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
.+.++..+ ++++..|++++|| ..|.+-++++|++++| ++|.++++ ++.-...
T Consensus 187 ~~~~~~~d---------------~~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h-----------~~gal~~~-~ad~~aL 238 (429)
T PF02347_consen 187 LDEDGTTD---------------DDDTAAVMVQNPN-TFGVFEDIKEIADIAH-----------AAGALVIV-GADPNAL 238 (429)
T ss_dssp BBTTCSB----------------STTEEEEEEESS--TTSB--THHHHHHHHH-----------HTT-EEEE-CGGCCGC
T ss_pred ccccCCcc---------------ccCeEEEEeecCC-CCceEeeHHHHHHHHH-----------HcCCEEEE-ecCHHHH
Confidence 33322222 2468999999996 5699999999999999 78988887 6543221
Q ss_pred C-CCCCCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCC--cccc---cccCcccc
Q psy16512 256 N-MLDLKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANE--NFHI---KKDGLFEK 324 (815)
Q Consensus 256 ~-~~dl~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~--~~~~---~~~~~~~~ 324 (815)
. -....++++|+++.+ ||.||.|.| +|++.+++++.+.+.-.+.|-. .+... .+.. .++... |
T Consensus 239 ~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t----~D~~G~~~~~ltLqtREQHI-r 312 (429)
T PF02347_consen 239 GGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQT----KDADGKRAFVLTLQTREQHI-R 312 (429)
T ss_dssp CTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEE----EBCCCSCCEEEE-GGGTCHH-H
T ss_pred hCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceeccc----ccccccceeeeccccccccc-c
Confidence 1 112346789999666 887776653 8999999998777654444311 01111 1111 011112 2
Q ss_pred ccCCCCChhHHHHHH--HHHHHHHhhhh---h-H-HHHHHHHHHHHHHHHhc
Q psy16512 325 FEDGTVNYLAIISLK--YGFDTMEKKRK---S-F-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 325 ~~~gt~~~~~~~al~--~al~~l~~~~~---~-~-~~~~~l~~~l~~~L~~l 369 (815)
.+-.|.|+..-.++. .+.-++...|. . . +++...+.++.++|+++
T Consensus 313 ReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~ 364 (429)
T PF02347_consen 313 REKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI 364 (429)
T ss_dssp GCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333455443222221 22233333332 2 2 88889999999999885
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-07 Score=105.76 Aligned_cols=346 Identities=15% Similarity=0.131 Sum_probs=195.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +.-.+.+.+++.+++....+..+.. ...... ..++-++|.+.+...-+ .+.|++++
T Consensus 49 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~-~~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sG 121 (466)
T PRK07036 49 DGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFG-DMTNAP----AAELAAKLAELAPGDLN--HVFLTTGG 121 (466)
T ss_pred CCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccccc-ccCCHH----HHHHHHHHHHhCCCCcC--EEEEeCCc
Confidence 45567776432 3445788888877766422211110 011122 44566667776643223 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhcc-----------c--eEEcCch-----h-----h
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKTN-----------Q--IYSFSVD-----D-----A 181 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~~-----------g--~v~~~~~-----~-----~ 181 (815)
++|++.++..... ..+. ||.....| ............. + .++.... + .
T Consensus 122 seAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 201 (466)
T PRK07036 122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAF 201 (466)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHH
Confidence 9999888775421 1233 55555443 3232222211110 0 1111100 0 0
Q ss_pred --hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 182 --RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 182 --~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
...+.+++.+ .....++..+|++..+....|...| +++|.++|+ +||+++|+|+++. +|
T Consensus 202 ~~~~~~~~~~~i---~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~-----------~~g~llI~DEV~tGfG 267 (466)
T PRK07036 202 CDFLVDEFEDKI---LSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICR-----------RYDILYISDEVVTGFG 267 (466)
T ss_pred HHHHHHHHHHHH---HHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeechhCCC
Confidence 0011122211 1112245889999989888899888 777888888 9999999999873 43
Q ss_pred CC--CCCCC---CCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 255 SN--MLDLK---QHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 255 ~~--~~dl~---~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
.. ..-.. ...||++++ .|.+++-. -+|++++++++.+.+.+....+.. + . .-...
T Consensus 268 RtG~~~~~~~~~gv~PDivt~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~---------~-------~-~~~T~ 328 (466)
T PRK07036 268 RLGHFFASEAVFGIQPDIITF--AKGLTSGYQPLGAVIISERLLDVISGPNAKGNV---------F-------T-HGFTY 328 (466)
T ss_pred cCchhhhhhhhcCCCCCEEEE--ccccccCccccEEEEEcHHHHHHHhcccCcCcc---------c-------c-cCCCC
Confidence 31 11111 235898655 79776311 178999998887655321000000 0 0 00011
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--C
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--T 406 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~ 406 (815)
+-|..++++..+.++.+.+. ...+++.++.++|.+.|+.+. ..|.+.-+ ...|.++.+.+..... +
T Consensus 329 ~gnpl~~aaa~a~Le~i~~~-~l~~~~~~~g~~l~~~L~~l~---~~~~v~~v--------rG~Gl~~~ve~~~~~~~~~ 396 (466)
T PRK07036 329 SGHPVACAAALKNIEIMERE-GLCEHVREVGPYFEERLASLR---ELPLVGDV--------RGDHLMACVECVADKGSKA 396 (466)
T ss_pred CCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHhc---cCCCEEEE--------EeeceEEEEEEccCccccC
Confidence 34667777777888877643 223888888999998887652 11322211 2347788887753211 1
Q ss_pred cc--C---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 407 YY--G---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 407 ~~--~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.. + ...+.+.+.++||.+.+. .+.+|+++.+..|+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~Gvl~~~~----------------------------------------~~~~~l~Ppl~it~ 436 (466)
T PRK07036 397 LLPEDIAIGQRIDRHCQERGLLVRPL----------------------------------------EHLCVLSPPLIITR 436 (466)
T ss_pred CCCchhHHHHHHHHHHHHCCcEEeec----------------------------------------CCEEEEeCCCcCCH
Confidence 11 0 124666778899887531 14689998888899
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
+||++++++|.+.+.+
T Consensus 437 ~~id~~~~~l~~al~~ 452 (466)
T PRK07036 437 AQIDEIVAILRAAIEE 452 (466)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998855
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-09 Score=107.68 Aligned_cols=272 Identities=15% Similarity=0.097 Sum_probs=139.1
Q ss_pred CCCCCceeEEecCCchhhHHHHHhhhccC---CCc---EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhh
Q psy16512 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFN---EGS---FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 119 g~~~~~~~iv~t~g~t~al~~~~~al~~~---~gd---vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~ 192 (815)
|+..+++.|+|+.|+|+.+++++.++... .+. ||...+-|+++-....+.....+.--.+ ......
T Consensus 61 NAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gd-----a~~~~~--- 132 (363)
T PF04864_consen 61 NAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGD-----ASNFKN--- 132 (363)
T ss_dssp SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEE-----CCCGTT---
T ss_pred cccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccccc-----HHhhcc---
Confidence 45566677999999999999999998632 222 7777777766654444433222111110 111100
Q ss_pred hhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCCCCCCCCcEEEEc
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDLKQHQPDFISIS 271 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~dl~~~~~D~vv~S 271 (815)
.-++.+-+=++++||||.|.+- ..+++ ..+..+|.|-|++.++- |+.- ..+-|++.+|
T Consensus 133 ----~~~~~~~IElVTSPNNPDG~lr-----~~V~~-----------g~~~k~I~D~AYYWPhyTpI~~-~aD~DiMLFT 191 (363)
T PF04864_consen 133 ----SDNPSPYIELVTSPNNPDGQLR-----EAVLN-----------GSSGKVIHDLAYYWPHYTPITA-PADHDIMLFT 191 (363)
T ss_dssp -----S-CCGEEEEEESS-TTT-----------SST-----------TTEEEEEEE-TT-STTTS---S--B--SEEEEE
T ss_pred ----CCCCCCeEEEEeCCCCCccccc-----chhcC-----------CCCcceeeeeeeecccccccCC-CCCCceEEEE
Confidence 0113356678899999999874 22345 56778899999888873 3332 3567999999
Q ss_pred cccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 272 FYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 272 ~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
++|.=| .+| +||.+++++.+ +++...+ .. .|.-+ +--+...+++.+..+
T Consensus 192 ~SK~TG-HAGSR~GWAlVKD~~Va~kM~~y~-~l-------------------------nTiGv-S~dsQLRa~kiLk~v 243 (363)
T PF04864_consen 192 LSKLTG-HAGSRFGWALVKDEEVAKKMTKYM-EL-------------------------NTIGV-SRDSQLRALKILKVV 243 (363)
T ss_dssp HHHHCS--GGG-EEEEEES-HHHHHHHHHHH-HH-------------------------HCSS---HHHHHHHHHHHHHH
T ss_pred EecccC-ccccccceeeecCHHHHHHHHHHH-HH-------------------------hcccC-cHHHHHHHHHHHHHH
Confidence 999888 777 89999998654 3332111 00 01111 111111222222221
Q ss_pred ----hh-----hH-----HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCC-C-----CCCCcccceEEEEEecCCCCcc
Q psy16512 349 ----RK-----SF-----TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTD-Y-----GESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 349 ----~~-----~~-----~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~-~-----~~~~~~~~i~~f~~~~~~~~~~ 408 (815)
+. .+ +..++.-..|.+.+..- ..+.+..-.. + .....++.+.+++....+.+
T Consensus 244 ~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S------~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~-- 315 (363)
T PF04864_consen 244 LDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSAS------KRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDE-- 315 (363)
T ss_dssp HHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCS------SSEEE---SCEEETTTTCEEE---SEEEEEESSCGGS--
T ss_pred HhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhc------CceecCcCCchhccccccccCCCCCeEEEecCCcccc--
Confidence 10 12 23333333344444322 1233321110 0 01233567888887644322
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
+....|.+.||..|.|..+. ....++|+|+- .+++|.+.|+
T Consensus 316 ---DC~~~l~~~~I~tr~G~~fg----------------------------------a~~ryVRlSml--~~~d~Fd~l~ 356 (363)
T PF04864_consen 316 ---DCYAVLREAKIITRSGVLFG----------------------------------ADSRYVRLSML--KRDDDFDQLL 356 (363)
T ss_dssp ---SHHHHHHCTTEEEEEGGGGT----------------------------------S-TTEEEEESS--S-HHHHHHHH
T ss_pred ---cHHHHHHhCCcccCCCCccC----------------------------------CCCCeEEEecc--CCHHHHHHHH
Confidence 27788999999999986532 22479999985 5889999999
Q ss_pred HHHHHH
Q psy16512 489 SFLNQY 494 (815)
Q Consensus 489 ~~L~~~ 494 (815)
+.|.++
T Consensus 357 ~rL~~l 362 (363)
T PF04864_consen 357 ERLSKL 362 (363)
T ss_dssp HHHHCC
T ss_pred HHHHhh
Confidence 998763
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-07 Score=106.94 Aligned_cols=350 Identities=13% Similarity=0.134 Sum_probs=189.4
Q ss_pred ccCCCcceeeeccccccchhhhhhhhc------ccccchhhHH--HHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHH
Q psy16512 43 KTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMN--QTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 43 ~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~--al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~l 114 (815)
+..-|-++..+ .++..|+|..+ -+--.+.+.+ ++.+++....+..+......... ..++-++|
T Consensus 31 ~~a~G~~l~D~-----~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~----~~~la~~l 101 (443)
T PRK08297 31 ERSQGSYLVDA-----RTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVE----MARFVDTF 101 (443)
T ss_pred EeccCCEEEEC-----CCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHH----HHHHHHHH
Confidence 45556554443 12445777543 2344577777 77766654221111111111122 44566667
Q ss_pred HhHcC-CCCCceeEEecCCchhhHHHHHhhhcc---------C---CC-c-EEEecCCCc-chhhHHHHhhccc----eE
Q psy16512 115 LQYFN-TDSDHYSVIFTSGATSAIKTVSEYFEF---------N---EG-S-FIYLTDNHT-SVLGMRELVKTNQ----IY 174 (815)
Q Consensus 115 a~~~g-~~~~~~~iv~t~g~t~al~~~~~al~~---------~---~g-d-vv~~~~~h~-s~~~~~~~~~~~g----~v 174 (815)
+++.+ -..+ .+.|++++++|++.++..... . ++ . ||.....|. ............. ..
T Consensus 102 ~~~~~p~~~~--~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~ 179 (443)
T PRK08297 102 ARVLGDPELP--HLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARF 179 (443)
T ss_pred HhhcCCCCCC--EEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccC
Confidence 66652 1123 499999999999888876520 1 12 3 666655443 3333222211100 00
Q ss_pred E------c--C-------chh---h-----hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHh
Q psy16512 175 S------F--S-------VDD---A-----RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVH 227 (815)
Q Consensus 175 ~------~--~-------~~~---~-----~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~ 227 (815)
+ + . ... . .+++.+++.+ .....++.+|++.-+....|.+.| +++|.++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc 255 (443)
T PRK08297 180 PKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAF----ERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELC 255 (443)
T ss_pred CCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHH----HhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHH
Confidence 0 0 0 000 0 0111112211 112356889999888888888755 55577777
Q ss_pred hccccccccccCCCCeEEEEecccc-cCCCCC----CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccC
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATY-CGSNML----DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~~----dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~ 302 (815)
+ ++|+++|+|+++. +|..-. +.-...||+++ +.|.++ +|.+++.+++.+.....+ ..
T Consensus 256 ~-----------~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~--~gK~l~----~~a~l~~~~i~~~~~~~~-~~ 317 (443)
T PRK08297 256 D-----------EHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVA--FGKKTQ----VCGIMAGRRVDEVEDNVF-AV 317 (443)
T ss_pred H-----------HcCCEEEEechhhccCccchHHHHHhcCCCCCEEE--eccccc----ccceecchHHHHhhhhhc-cC
Confidence 7 9999999999874 433210 11123589886 578764 233344443221110000 00
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
. .......+.|..+..+..++++.+.+. ...+++.++.+++.+.|+++... .|.+.. .
T Consensus 318 ~------------------~~~~~T~~gnpl~~aaa~a~L~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~~~~-~ 375 (443)
T PRK08297 318 S------------------SRINSTWGGNLVDMVRARRILEVIEED-GLVENAARQGEYLLARLEELAAE--FPAVVS-N 375 (443)
T ss_pred c------------------cccCCCCCccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH--CCCcce-e
Confidence 0 001111134667777777777777653 22388888888888888775210 021110 0
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~ 462 (815)
....|.++.+.+.+.. ....+.+.+.++||.+.++.
T Consensus 376 ------vrg~G~~~~i~~~~~~----~~~~~~~~l~~~Gvl~~~~~---------------------------------- 411 (443)
T PRK08297 376 ------VRGRGLMCAFDLPTTA----DRDEVIRRLWEEGVLVLPCG---------------------------------- 411 (443)
T ss_pred ------eeccceEEEEEecCHH----HHHHHHHHHHHCCEEEecCC----------------------------------
Confidence 1224778888875321 11246777788999985421
Q ss_pred cCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 463 ~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+|+++.+..|++|++.++++|.+.+.
T Consensus 412 -----~~~lr~~P~l~~t~~eid~~l~~l~~~l~ 440 (443)
T PRK08297 412 -----ERSIRFRPALTVTTEEIDAAIDALRRALP 440 (443)
T ss_pred -----CCeEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 14699999999999999999999999875
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-07 Score=104.65 Aligned_cols=331 Identities=12% Similarity=0.101 Sum_probs=188.5
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
.++..|+|..+. +--.+.+.+++.+++.... +..++ +. ..++.++|.+.+. ..+ .+.|++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~------~~----~~~la~~l~~~~p-~~~--~v~f~~ 116 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPT------EL----EIEFAKMLKEAIP-SLE--KVRFVN 116 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCC------HH----HHHHHHHHHHhCC-CCc--EEEEeC
Confidence 345677776432 2344778888877776421 11111 22 4456666666654 123 499999
Q ss_pred CchhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhc----------cc--------eEEcCchhhhcchhhhhh
Q psy16512 132 GATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKT----------NQ--------IYSFSVDDARNMLNEFKE 190 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~----------~g--------~v~~~~~~~~~~~~~~~~ 190 (815)
++++|+..++.....-.|. +|.....|.. .......... .+ ...+..+ +.+.+++.
T Consensus 117 sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~ 193 (428)
T PRK12389 117 SGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFN---DIEALKEA 193 (428)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCC---CHHHHHHH
Confidence 9999999888755422343 6655544433 2222221110 01 0111111 23333333
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC----CCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML----DLKQ 262 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~----dl~~ 262 (815)
+. ....+..+|++..+....|.+.| +++|.++|+ ++|+++|+|+++...-... ..-.
T Consensus 194 l~----~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~-----------~~g~llI~DEV~tG~Rt~~~~a~~~~g 258 (428)
T PRK12389 194 LD----KWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAH-----------EAGALVIYDEVITAFRFMYGGAQDLLG 258 (428)
T ss_pred HH----hcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCcchhhHHhC
Confidence 32 22245789999989888999988 788899998 9999999999976321111 1112
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
..+|++ ++.|.+++-.-+|++++++++.+.+.+. +.. ........|.++.++..+.+
T Consensus 259 v~PDiv--t~gK~lggG~Pi~av~~~~~i~~~~~~~--~~~-------------------~~~~T~~gnpl~~Aaala~L 315 (428)
T PRK12389 259 VEPDLT--ALGKIIGGGLPIGAYGGRKDIMEQVAPL--GPA-------------------YQAGTMAGNPASMAAGIACL 315 (428)
T ss_pred CCCCee--eechhhcCCCceeEEeEHHHHHhhhccC--CCc-------------------ccccCCccCHHHHHHHHHHH
Confidence 358875 5689777311178888888877655321 000 00111135667777777888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCC--------cc-CHHH
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGT--------YY-GYSE 412 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--------~~-~~~~ 412 (815)
+.+.+. ...++.+++.+++.+.|+++.... |. ..+.. ..+++.+.+...... .. ....
T Consensus 316 ~~l~~~-~l~~~~~~~g~~l~~~L~~l~~~~--~~~~~v~r---------~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~ 383 (428)
T PRK12389 316 EVLQQE-GVYEKLDRLGAMLEEGILEAAEKH--GITITINR---------LKGALTVYFTDEKVTNYDQAERSDGEAFGK 383 (428)
T ss_pred HHHhcc-cHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEe---------cCcEEEEEEeCCCCCChhhhcccCHHHHHH
Confidence 887654 233888888889988887652100 21 12211 123555555432110 00 0234
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.+.++||.+.+.. .+.+.+ .+..|++|+++++++++
T Consensus 384 ~~~~l~~~Gv~~~~~~---------------------------------------~~~~~~--~l~~t~e~id~~~~~l~ 422 (428)
T PRK12389 384 FFKLMLNQGINLAPSK---------------------------------------YEAWFL--TTAHTEEDIEETLEAVD 422 (428)
T ss_pred HHHHHHHCCcEeecCC---------------------------------------CCCeee--cCCCCHHHHHHHHHHHH
Confidence 6677788999886421 012333 34569999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+.+.
T Consensus 423 ~~l~ 426 (428)
T PRK12389 423 RAFA 426 (428)
T ss_pred HHHH
Confidence 9874
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.2e-09 Score=110.97 Aligned_cols=204 Identities=12% Similarity=0.156 Sum_probs=133.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
+...+-+.+.+++++++++...+.. +-+-......+.. ...+..+.+......++. .++++++.+.|+.+++.
T Consensus 29 v~~t~lG~s~~~~e~iea~~~~~~~--~v~Le~~l~~g~~-~~R~~~~~~~~~~~~~ae----a~~ivnnn~aAVll~~~ 101 (395)
T COG1921 29 VLMTNLGRSLYSPEAIEAMKEAMRA--PVELETDLKTGKR-GARLTELAELLCGLTGAE----AAAIVNNNAAAVLLTLN 101 (395)
T ss_pred heeccCCCccCCHHHHHHHHHHhcc--cceeeeecccchh-hHHHHHHHHHHhcccchh----heeeECCcHHHHHHHHh
Confidence 3444556778888888887665442 2222211222222 111223333333334433 27888999999999999
Q ss_pred hhccCCCcEEEecC-----CCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc
Q psy16512 143 YFEFNEGSFIYLTD-----NHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG 215 (815)
Q Consensus 143 al~~~~gdvv~~~~-----~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG 215 (815)
++. +++.+|++.. .|+.+ -..+...| ++.+...+.-...+.+.+ +.++|+++.-.+-+|. |
T Consensus 102 al~-~~~EvVis~g~lV~gg~~~v---~d~~~~aG~~l~EvG~tn~t~~~d~~~A-------Ine~ta~llkV~s~~~-~ 169 (395)
T COG1921 102 ALA-EGKEVVVSRGELVEGGAFRV---PDIIRLAGAKLVEVGTTNRTHLKDYELA-------INENTALLLKVHSSNY-G 169 (395)
T ss_pred hhc-cCCeEEEEccccccCCCCCh---hHHHHHcCCEEEEecccCcCCHHHHHHH-------hccCCeeEEEEeeccc-c
Confidence 997 5555666653 33444 33444445 677766555555555553 4588888888877775 5
Q ss_pred c--ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCCCC---CCCCcEEEEccccccccCCcceEEEEec
Q psy16512 216 T--KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDLK---QHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 216 ~--~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~dl~---~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
. ..+.+++.+++| ++|+++++|+++..... ..++. +.++|.+++|.+|.||+|. .|+++.++
T Consensus 170 f~~~l~~~~l~~ia~-----------~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkK 237 (395)
T COG1921 170 FTGMLSEEELVEIAH-----------EKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKK 237 (395)
T ss_pred ccccccHHHHHHHHH-----------HcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechH
Confidence 4 346888999999 99999999999865421 12222 3589999999999999897 79999999
Q ss_pred ccccccCc
Q psy16512 290 KSAHVLNK 297 (815)
Q Consensus 290 ~~~~~l~~ 297 (815)
+++++++.
T Consensus 238 elI~~lq~ 245 (395)
T COG1921 238 ELIEKLQS 245 (395)
T ss_pred HHHHHHHh
Confidence 99987753
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-07 Score=106.93 Aligned_cols=342 Identities=12% Similarity=0.085 Sum_probs=195.3
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.... ...... ..++-++|++++....+ .+.|++++
T Consensus 54 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~--~~~~~~----~~~lae~L~~~~p~~~~--~v~f~~SG 125 (460)
T PRK06916 54 NGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLL--GLANVP----SILLAEKLIEVVPEGLK--KVFYSDSG 125 (460)
T ss_pred CCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcccc--ccCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCc
Confidence 4566777543 2445688888888877642221111 111122 45677778887753323 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhcc-----------c--eEEcCc--------h--h-
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKTN-----------Q--IYSFSV--------D--D- 180 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~~-----------g--~v~~~~--------~--~- 180 (815)
++|++.++..... .+|. ||.....| ........+.... + .+|... + .
T Consensus 126 seAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~ 205 (460)
T PRK06916 126 ATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEI 205 (460)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHH
Confidence 9999888775541 2343 66655543 3333322221110 0 111110 0 0
Q ss_pred -hhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 181 -ARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
..+.+.+++.+. ...++..+|++.- +....|.+.| ++++.++|+ ++|+++|+|+++. +
T Consensus 206 ~~~~~~~l~~~l~----~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~-----------~~g~llI~DEV~TG~ 270 (460)
T PRK06916 206 VKKHLEELEELLK----EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCT-----------KYNVLFITDEVATGF 270 (460)
T ss_pred HHHHHHHHHHHHH----hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEeechhhCC
Confidence 011222222221 1224578888877 4777788765 445677777 9999999999864 3
Q ss_pred CCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
|..- .+.-...||+++ +.|.+++-. -+|++++++++.+.+.+.....+ ..+..+
T Consensus 271 GRtG~~~a~~~~gv~PDiv~--~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~-------------------~~~~~~ 329 (460)
T PRK06916 271 GRTGKMFACEHENVTPDIMT--AGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQK-------------------TFFHGH 329 (460)
T ss_pred CcCchhhHHHhcCCCCCeee--eehhhhcCccccceeeecHHHHHHhhccccccC-------------------ccccCC
Confidence 2211 111123589875 478666321 27889998887654421110000 001111
Q ss_pred --CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-
Q psy16512 329 --TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG- 405 (815)
Q Consensus 329 --t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~- 405 (815)
+-|..++.+..++++.+.+.+ ..++++++.+++.+.|+++.. .+.+.-+ ...|.++.+.+.....
T Consensus 330 T~~gnpl~~aaa~a~l~~l~~~~-l~~~~~~~g~~l~~~l~~l~~---~~~v~~v--------rG~Glm~giel~~~~~~ 397 (460)
T PRK06916 330 SYTGNPLGCAVALANLELYEKTN-LIEQVARKTEYVATQLEDLFA---LKHVGDI--------RQLGLMVGIELVKNKET 397 (460)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHhhc---CCCeEEe--------ecCCceeeEEeeccccc
Confidence 236677777778888776531 238889999999999987621 1222111 2347777777753211
Q ss_pred -Ccc----C-HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 406 -TYY----G-YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 406 -~~~----~-~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+.. . ...+.+.+.++||.+.+. ...+|+.+.+..
T Consensus 398 ~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----------------------------------------g~~l~~~Ppl~i 437 (460)
T PRK06916 398 KEPFEWTERVGVQVCKRSRELGMLTRPL----------------------------------------GNTIVFMPPLAS 437 (460)
T ss_pred ccCCCchhhHHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEeCCccc
Confidence 110 1 134667778899987531 157999988889
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy16512 480 NWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~~ 497 (815)
|++||+.++++|++.+.+
T Consensus 438 t~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 438 TIDELDEMLRILYKAISD 455 (460)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998753
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-07 Score=106.18 Aligned_cols=329 Identities=12% Similarity=0.138 Sum_probs=184.4
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
.++..|+|..+. +--.+.+.+++.+++.... +..++ .. ..++-++|.+.+.. .+ .+.|++
T Consensus 96 ~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~------~~----~~~lAe~l~~~~p~-~~--~v~f~~ 162 (474)
T PLN02482 96 VDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPC------LL----ENVLAEMVIDAVPS-VE--MVRFVN 162 (474)
T ss_pred CCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCC------HH----HHHHHHHHHHhCCC-CC--EEEEeC
Confidence 456678886542 2334788888887776421 11111 12 34556666666642 23 499999
Q ss_pred CchhhHHHHHhhhccCCCc--EEEecCCCcchhhHHHHhh-----------ccc--------eEEcCchhhhcchhhhhh
Q psy16512 132 GATSAIKTVSEYFEFNEGS--FIYLTDNHTSVLGMRELVK-----------TNQ--------IYSFSVDDARNMLNEFKE 190 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd--vv~~~~~h~s~~~~~~~~~-----------~~g--------~v~~~~~~~~~~~~~~~~ 190 (815)
++|+|+..++....--.|. ||.....|.....+..... ..+ .+.+..+ +++.+++.
T Consensus 163 SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n---d~~~l~~~ 239 (474)
T PLN02482 163 SGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN---DLEAVKKL 239 (474)
T ss_pred ChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC---ChHHHHHH
Confidence 9999998887765422343 6655544333221100000 000 0001111 23344433
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccChH----HHHHHhhccccccccccCCCCeEEEEecccccCCCC-C----CCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYPLS----WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-L----DLK 261 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~----~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-~----dl~ 261 (815)
+. ....+..+|++..+....|.+.|.+ .|.++|+ ++|+++|+|+++. |... . ..-
T Consensus 240 l~----~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~-----------~~g~lLI~DEV~t-GfR~g~~ga~~~~ 303 (474)
T PLN02482 240 FE----ANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITK-----------ENGALLVFDEVMT-GFRIAYGGAQEYF 303 (474)
T ss_pred HH----hCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecccc-CeecCcchHhHHh
Confidence 32 1224578999999988899988854 5788888 9999999999974 4310 0 001
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~ 339 (815)
...+|++ ++.|.+|+-.-+|.+..++++.+.+.+. + ..+..+| -|.+++.+..
T Consensus 304 gv~PDi~--t~gK~lggG~Pigav~g~~ei~~~~~~~---~--------------------~~~~~~T~~gnpl~~aAal 358 (474)
T PLN02482 304 GITPDLT--TLGKVIGGGLPVGAYGGRREIMEMVAPA---G--------------------PMYQAGTLSGNPLAMTAGI 358 (474)
T ss_pred CCCCCEE--EecchhhCCCceEEEEEcHHHHHhhccC---C--------------------CcccccCcchhHHHHHHHH
Confidence 2257875 5689887311178888888887655321 0 0011223 3556666676
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---------CCccCH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---------GTYYGY 410 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---------~~~~~~ 410 (815)
++|+.+.+. ...+++.++.+++.+.|.++....+.|.+ ... .++++.+.+.... ...-..
T Consensus 359 a~L~~l~~~-~~~~~~~~~g~~l~~~L~~l~~~~g~~~~--~~~--------v~g~~gi~f~~~~~~~~~~~~~~d~~~~ 427 (474)
T PLN02482 359 HTLKRLQQP-GTYEYLDKITKKLIQGILEAGKKAGHEMC--GGY--------ISGMFGFFFTEGPVYNFADAKKSDTAKF 427 (474)
T ss_pred HHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHhcCCCEE--Ecc--------cceEEEEEEecCCccChhhhccCCHHHH
Confidence 777777542 23388888899999988776211111211 111 1335555553211 000012
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.+.++||.+.+... +.+ .+....|++|||+++++
T Consensus 428 ~~~~~~l~~~Gv~~~~~~~-------------------------------------~~~----~psl~ht~~dId~~l~a 466 (474)
T PLN02482 428 ARFHRGMLEEGVYLAPSQF-------------------------------------EAG----FTSLAHTEEDIDFTIAA 466 (474)
T ss_pred HHHHHHHHHCCeEEeccCC-------------------------------------CCC----cCCCCCCHHHHHHHHHH
Confidence 3466677789998864210 001 13455699999999999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
+++.+.
T Consensus 467 l~~~l~ 472 (474)
T PLN02482 467 AERVLA 472 (474)
T ss_pred HHHHHH
Confidence 999874
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=117.52 Aligned_cols=343 Identities=15% Similarity=0.148 Sum_probs=198.1
Q ss_pred chhhhhhhhc----ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 60 KDICYLDYTG----AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 60 ~~~iyLd~a~----~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
++..|+|..+ -+--.+.+.+++.+++... +.++.. ..+. ..++-++|++.+....+ .+.|++++|+
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l---~~~~~~-~~~~----~~~lAe~L~~~~p~~~~--~v~f~nSGsE 691 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARL---NTNTRY-LHDA----IVAYAERLTATLPDGLT--VAFFVNSGSE 691 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhc---CCcCCc-CCHH----HHHHHHHHHHhCCCCcC--EEEEeCCcHH
Confidence 4566777543 3344577888887777642 112111 1122 55667777777643223 3899999999
Q ss_pred hHHHHHhhhccCCCc--EEEecCC-CcchhhHHHHhh-----ccc------e--EE--------cCchhh----hcchhh
Q psy16512 136 AIKTVSEYFEFNEGS--FIYLTDN-HTSVLGMRELVK-----TNQ------I--YS--------FSVDDA----RNMLNE 187 (815)
Q Consensus 136 al~~~~~al~~~~gd--vv~~~~~-h~s~~~~~~~~~-----~~g------~--v~--------~~~~~~----~~~~~~ 187 (815)
|+..++.....-.|. ||..... |........... ..+ . ++ ....+. ...+.+
T Consensus 692 A~e~AlklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 771 (1013)
T PRK06148 692 ANSLALRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESV 771 (1013)
T ss_pred HHHHHHHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHH
Confidence 999888765422333 6665544 333322222110 000 1 00 000000 001122
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC---CC
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM---LD 259 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~---~d 259 (815)
++.+..+. .....+.+|++..+....|.+.| ++++.++|+ ++|+++|+|+++. +|..- .-
T Consensus 772 ~~~i~~~~-~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~-----------~~g~llI~DEVqtGfGRtG~~~~a 839 (1013)
T PRK06148 772 AEQIAAMA-AKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVR-----------AAGGVCIADEVQVGFGRVGSHWWA 839 (1013)
T ss_pred HHHHHhhh-ccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHH-----------HhCCEEEEEecccCCCCCCCcchh
Confidence 22221110 11245788999888888888887 666888888 8999999999874 43221 11
Q ss_pred C--CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 L--KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 l--~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
. ....||++++ .|.+|+-.-+|++++++++.+.+.+-. . .+....-|..+.++
T Consensus 840 ~e~~gv~PDivt~--gK~lggG~Plgav~~~~ei~~~~~~g~----~-------------------~~~Tf~gnpla~aa 894 (1013)
T PRK06148 840 FETQGVVPDIVTM--GKPIGNGHPMGAVVTTREIADSFDNGM----E-------------------YFNTFGGNPVSCAI 894 (1013)
T ss_pred hhhcCCCcceeee--cccccCCcceEEEEEcHHHHhhccCCC----c-------------------cccCCCCCHHHHHH
Confidence 1 2235898665 797773222899999988876553210 0 01111345677777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-cc---CHHHH
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-YY---GYSEV 413 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~~---~~~~v 413 (815)
..+.++.+.+. .-.++..++-++|.+.|+++... .|.+.-+ ...|.++.+.+...... .- ....+
T Consensus 895 a~a~L~~i~~e-~l~~~~~~~G~~l~~~L~~l~~~--~~~i~~V--------rG~Gl~~gvel~~~~~~~~~~~~~~~~i 963 (1013)
T PRK06148 895 GLAVLDIIEDE-DLQRNALEIGNYLLAGLRELQDR--FDIIGDV--------RGMGLFLGIELVTDRKTKAPATAIARYV 963 (1013)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHh--CCCceEE--------eeeceEEEEEecCCccccCccHHHHHHH
Confidence 77788877654 12378888888998888776210 0211111 23467777777532110 00 02346
Q ss_pred HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 414 QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 414 ~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+.++||.+.+. |...+.+|+.+.+..|++||+.++++|++
T Consensus 964 ~~~~~~~Gvl~~~~-------------------------------------g~~~~vlr~~Ppl~it~~~id~~l~~l~~ 1006 (1013)
T PRK06148 964 KNGARERGILIGTE-------------------------------------GPHDNVLKIRPPLIFSRADADHLLEVLDD 1006 (1013)
T ss_pred HHHHHhCCeEEecc-------------------------------------CCCCCEEEEeCCccCCHHHHHHHHHHHHH
Confidence 67778899998642 11137899999999999999999999999
Q ss_pred HHhh
Q psy16512 494 YFLQ 497 (815)
Q Consensus 494 ~~~~ 497 (815)
.+.+
T Consensus 1007 ~l~~ 1010 (1013)
T PRK06148 1007 VLAA 1010 (1013)
T ss_pred HHHH
Confidence 8754
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-07 Score=105.46 Aligned_cols=202 Identities=13% Similarity=0.213 Sum_probs=126.3
Q ss_pred CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC-------CCCCCCCCCcE
Q psy16512 200 HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN-------MLDLKQHQPDF 267 (815)
Q Consensus 200 ~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~-------~~dl~~~~~D~ 267 (815)
.++.+|++..+....|.+.| +++|.++|+ ++|+++|+|+++. +|.. ..++. ..+|+
T Consensus 250 ~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~-----------~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~-~~PDi 317 (464)
T TIGR00699 250 KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITK-----------KHNVAFIVDEVQTGVGATGKFWAHEHWNLD-DPPDM 317 (464)
T ss_pred CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeeeeeCCCCCcchhHHHhcCCC-CCCCE
Confidence 45889999999988899998 777888888 9999999999874 2221 01111 13898
Q ss_pred EEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh
Q psy16512 268 ISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347 (815)
Q Consensus 268 vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~ 347 (815)
++ +.|.+| |.|+++.+ +.+....+.. .......|..+.+++.++++.+.+
T Consensus 318 ~t--~gK~lg---~gG~~~~~-~~~~~~~~~~------------------------~~~T~~gnp~~~aaa~a~L~~l~~ 367 (464)
T TIGR00699 318 VT--FSKKFQ---TAGYFFHD-PAFRPNKPYR------------------------QFNTWMGDPSRALILREIIQEIKR 367 (464)
T ss_pred EE--ehhhhc---cCCccccc-hhccCCCCcc------------------------cccCCCCCHHHHHHHHHHHHHHHh
Confidence 55 479885 22443322 2110000000 111223556677777778887764
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 348 ~~~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
. ...++..++-+++.+.|+++.. ..| .+.-+.. ...|.++.+.+++... ...+.+.+.++||.++.
T Consensus 368 ~-~l~~~~~~~g~~l~~~L~~l~~--~~~~~i~~vRg------~G~Glm~gie~~~~~~----~~~i~~~~~~~Gvl~~~ 434 (464)
T TIGR00699 368 K-DLLENVAHVGDYLYTGLEDLQK--KYPEFIQNLRG------KGRGTFIAWDTPDEAK----RDKLLKKARNNGVNIGG 434 (464)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHH--hCCCceeeecc------cCeEEEEEEecCCHHH----HHHHHHHHHHCCcEEec
Confidence 3 1227777777888888876520 002 1222210 0247888887753211 13477778889998853
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
. | .+.|||++.+..|++||+.++++|.+.+
T Consensus 435 ~------------g---------------------------~~~ir~~Ppl~it~~eid~~~~~l~~~~ 464 (464)
T TIGR00699 435 C------------G---------------------------VKAIRLRPMLVFQKHHADIFLEIISKII 464 (464)
T ss_pred C------------C---------------------------CCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 1 0 2679999999999999999999998753
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-07 Score=103.45 Aligned_cols=351 Identities=14% Similarity=0.117 Sum_probs=194.5
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+.++.. ...+. ..++.++|++++....+ .+.|++++
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~--~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sG 99 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSF--FTTEP----AEALADRLVAAAPAGLE--HVYFVSGG 99 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccc--cCCHH----HHHHHHHHHHhCCCCCC--EEEEcCCc
Confidence 3456777543 33455788888888776432222211 11122 45666777776642223 39999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCC-CcchhhHHHHhhc------cc-------eEEcCc--hhh---h----
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDN-HTSVLGMRELVKT------NQ-------IYSFSV--DDA---R---- 182 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~-h~s~~~~~~~~~~------~g-------~v~~~~--~~~---~---- 182 (815)
++|+..++..... +++. ||..... |............ .+ .++... ... .
T Consensus 100 sEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (443)
T PRK07483 100 SEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEA 179 (443)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHH
Confidence 9999888775431 1343 6665544 3333332222110 00 111100 000 0
Q ss_pred ----cchhhhhhhhhhhhhcCCCccEEEEecccC-CCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-
Q psy16512 183 ----NMLNEFKESQENVENMRHSNSLFVYPAESN-FSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY- 252 (815)
Q Consensus 183 ----~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n-~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~- 252 (815)
.++.+++++ .....+++.+|++..+.- ..|.+.| ++.+.++|+ +||+++|+|+++.
T Consensus 180 ~~~~~~~~l~~~~---~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~-----------~~gillI~DEV~tG 245 (443)
T PRK07483 180 YGQRLADELEAKI---LELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCD-----------RYGVLLILDEVMCG 245 (443)
T ss_pred HHHHHHHHHHHHH---HhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHH-----------HhCCEEEEecceeC
Confidence 011222211 111124578888887764 3477766 556777787 9999999999865
Q ss_pred cCCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 253 CGSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 253 ~g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+|..- ...-...||++++ .|.+++-. -+|++++++++.+.+.+.. +. + .....
T Consensus 246 fGRtG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~~~~i~~~~~~~~---~~---------~--------~h~~T 303 (443)
T PRK07483 246 MGRTGTLFACEEDGVAPDLVTI--AKGLGAGYQPIGAVLASDRIYDAIADGS---GF---------F--------QHGHT 303 (443)
T ss_pred cccCcHHHHHhhcCCCCCeeee--hhhhccCccccEEEEEcHHHHHHHhcCC---Cc---------c--------ccCCC
Confidence 33210 1111235898776 68666321 2789999988765443110 00 0 00001
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-- 405 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-- 405 (815)
..-|..+.++..+.++.+.+. ...+++.++.++|.+.|+++... .|.+.-+ ...|.++.+.+.....
T Consensus 304 ~~gnpl~~aaa~a~l~~i~~~-~l~~~~~~~g~~l~~~L~~l~~~--~~~i~~v--------RG~Glm~gie~~~~~~~~ 372 (443)
T PRK07483 304 YLGHATACAAALAVQRVIAED-GLLANVRARGEQLRARLRERLGQ--HPHVGDI--------RGRGLFVGVELVADRATK 372 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHhc--CCCeeeE--------eecccEEEEEEeeccccc
Confidence 124567777777888877654 12388888888888888764100 1222111 2347777887753211
Q ss_pred CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 406 TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 406 ~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
...+ ...+.+.+.++|+.+.....+. ++..++.+|+...+..|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~--------------------------------~~~~~~~l~~~PpL~it 420 (443)
T PRK07483 373 APFDPALKLHARIKREAMARGLMVYPMGGTI--------------------------------DGVRGDHVLLAPPFIIT 420 (443)
T ss_pred CCCCchhhHHHHHHHHHHHCCcEEEecCccc--------------------------------cCCCCCEEEEECCCCCC
Confidence 1110 1346677788999986421100 01113689999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
++|++.++++|++.+.+
T Consensus 421 ~~eid~~~~~l~~~l~~ 437 (443)
T PRK07483 421 AAQIDEIVERLGDAIDA 437 (443)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998753
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-07 Score=103.89 Aligned_cols=343 Identities=13% Similarity=0.045 Sum_probs=188.6
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC-----CCCceeEE
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT-----DSDHYSVI 128 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~-----~~~~~~iv 128 (815)
++..|+|..+ -+--.+.+.+++.+++....+..... -.... ..++-+++++++.. +.+ .+.
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~--~~~~~----~~~lae~L~~~~p~~~~~~~~~--~v~ 133 (472)
T PRK08742 62 DGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAG--FTHEP----AVQLAEQLLAIAPRQDGRAPLS--KVF 133 (472)
T ss_pred CCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccc--cCCHH----HHHHHHHHHHhCCCcccCCCCC--EEE
Confidence 3456777543 23455778888877765321111110 11111 44566667766642 122 499
Q ss_pred ecCCchhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhcc------c-------eEEcCchh------
Q psy16512 129 FTSGATSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKTN------Q-------IYSFSVDD------ 180 (815)
Q Consensus 129 ~t~g~t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~~------g-------~v~~~~~~------ 180 (815)
|++++++|++.++..... +++. ||.....|.. ........... + .++.....
T Consensus 134 f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~ 213 (472)
T PRK08742 134 YADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQ 213 (472)
T ss_pred EeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCC
Confidence 999999999888776531 1333 6666554433 32222211100 0 11111000
Q ss_pred ------hhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 181 ------ARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 181 ------~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
..+++.+++.+ .....++.+|++.- +....|.+.| ++++.++|+ ++|+++|+|+
T Consensus 214 ~~~~~~~~~~~~l~~~~----~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~-----------~~gillI~DE 278 (472)
T PRK08742 214 SAEDYALQAADALQALF----EQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCD-----------AHGAFLIADE 278 (472)
T ss_pred CHHHHHHHHHHHHHHHH----HhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEec
Confidence 00112222222 11224578888877 4677788766 444677777 9999999999
Q ss_pred ccc-cCCCC----CCCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 250 ATY-CGSNM----LDLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 250 a~~-~g~~~----~dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
++. +|..- .+.....||++++ .|.+++-. -+|++++++++.+.+...... +. + .
T Consensus 279 V~TGfGRtG~~~a~e~~gv~PDiv~~--gKgl~gG~~Plaav~~~~ei~~~~~~~~~~-~~---------~--------~ 338 (472)
T PRK08742 279 IATGFGRTGTLFACEQAGVMPDLLCL--SKGLTGGFLPLSAVLATQQLYDAFLDDSRE-RA---------F--------L 338 (472)
T ss_pred hhhCCCCCccchHHHhcCCCCCEEEE--cccccCCCCCcceeeccHHHHHHhhccCcc-Cc---------c--------C
Confidence 865 43211 1111235899877 68766221 278888888876544211000 00 0 0
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
.....+-|..+.++..++++.+.+.+ ..++..++.+++.+.++.+.. .|.+.-+ ...|.++.+.+...
T Consensus 339 h~~T~~gnpl~~Aaa~a~L~~i~~~~-l~~~~~~~g~~l~~~~~~~~~---~~~i~dv--------RG~Gl~~giel~~~ 406 (472)
T PRK08742 339 HSHSYTGNPLACAAALATLDIFADDD-VIARNQPTAARMTQLAAQIGE---HPHVADV--------RQAGMVVAFELTRG 406 (472)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHhc---CCCeeeE--------eccceEEEEEeccC
Confidence 00011246677777778888876541 126667777777665554410 1222111 23477888887532
Q ss_pred CC--CccC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 404 DG--TYYG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 404 ~~--~~~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
.. ..+. ...+.+.+.++||.++.. .+.|||.+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~vi~~~Pp 446 (472)
T PRK08742 407 GNKRTPFPPAARVGLHAYRAALARGVVLRPL----------------------------------------GDVLYWMPP 446 (472)
T ss_pred ccccccCCchhHHHHHHHHHHHHCCeEEEec----------------------------------------CCEEEEECC
Confidence 11 1111 124566677899988531 157999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q psy16512 477 HASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~~~~~ 497 (815)
+..|++||+.++++|++.+.+
T Consensus 447 L~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 447 YCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.1e-07 Score=100.67 Aligned_cols=348 Identities=13% Similarity=0.107 Sum_probs=194.3
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+..+.. ...+. ..++.++|++.+....+ .+.|++++
T Consensus 29 dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~--~~~~~----~~~lae~L~~~~p~~~~--~v~f~~sG 100 (447)
T PRK06917 29 NGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQ--FTSEP----AEKLAKKLSDLSPGDLN--WSFFVNSG 100 (447)
T ss_pred CCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccc--cCCHH----HHHHHHHHHHhCCCCCC--EEEEeCCh
Confidence 3456777543 23446888888888776532221110 11122 55677778877753323 48999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCCcc-hhhHHHHhhcc-----------c--eEEcCchh-----------
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNHTS-VLGMRELVKTN-----------Q--IYSFSVDD----------- 180 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h~s-~~~~~~~~~~~-----------g--~v~~~~~~----------- 180 (815)
|+|++.++..... .+|. |+.....|.. ........... + .++.....
T Consensus 101 sEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 180 (447)
T PRK06917 101 SEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTC 180 (447)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHH
Confidence 9999988876521 1333 5555544333 33322221111 0 11110000
Q ss_pred -hhcchhhhhhhhhhhhhc-CCCccEEEEecccCC-CccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-
Q psy16512 181 -ARNMLNEFKESQENVENM-RHSNSLFVYPAESNF-SGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY- 252 (815)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~-~~~t~lv~i~~~~n~-tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~- 252 (815)
..+.+.+++++. .. .+++.+|++.-.... -|.+.| ++.+.++|+ ++|+++|+|+++.
T Consensus 181 ~~~~~~~le~~i~----~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~-----------~~g~llI~DEv~tG 245 (447)
T PRK06917 181 QLACATELETAIE----RIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICD-----------HYDILFIADEVMTG 245 (447)
T ss_pred HHHHHHHHHHHHH----hcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHH-----------HcCCEEEEechhhC
Confidence 001122222221 11 235788888776653 456665 445677777 9999999999865
Q ss_pred cCCCC--C--CCCCCCCcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 253 CGSNM--L--DLKQHQPDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 253 ~g~~~--~--dl~~~~~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+|..- . ..-...||+++ +.|.+++-. -+|++++++++.+.+.+.. +. .+..
T Consensus 246 fGRtG~~~a~~~~gv~PDi~~--~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~---~~-------------------~~~~ 301 (447)
T PRK06917 246 LGRTGAMFAMEHWGVEPDIMT--LGKGLGAGYTPIAATVVSDRVMEPILRGS---RS-------------------IMSG 301 (447)
T ss_pred cCcccchhhHHhcCCCCCEEE--eeehhccCCcceEEEEEcHHHHHHHhccC---cc-------------------cccc
Confidence 22111 0 11123589854 579777321 1788888887765442110 00 0111
Q ss_pred C--CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 328 G--TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 328 g--t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
+ +.|.+++++..++++.+.+. ...+++.++-++|.+.|+++.. ..|.+.-+ ...|.++.+.+.....
T Consensus 302 ~T~~gnpl~~aaa~a~l~~l~~~-~l~~~~~~~g~~l~~~L~~l~~--~~~~i~~v--------rG~Gl~~~ie~~~~~~ 370 (447)
T PRK06917 302 HTLSANPLSAATALAVLEYMEKH-NLPEKAAEKGEYLIKGLQKVQQ--QSTIIGDV--------RGKGLLIGVEFVADKK 370 (447)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHh--cCCCEEEE--------eecceEEEEEEeccCC
Confidence 1 34667777777888877643 2238888888889888887621 01222111 2347778787753211
Q ss_pred --Ccc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 406 --TYY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 406 --~~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
+.. -...+.+.+.++||.+.+.... .+|...+.+|++..+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~--------------------------------~~g~~~~~i~l~Ppl~ 418 (447)
T PRK06917 371 TKQPFSKSQAVASELISVAAKNGLLLYPAVAG--------------------------------QDGKEGDAVIIAPPMT 418 (447)
T ss_pred cCCCCcchhHHHHHHHHHHHhCCcEEEecccc--------------------------------cCCCCCCEEEEECCCc
Confidence 110 0234667778899998642100 0012236899999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.|++||+.++++|.+.+.+
T Consensus 419 it~~eid~~~~~l~~~l~~ 437 (447)
T PRK06917 419 ITYSELDELLSIFAKSVEE 437 (447)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.8e-10 Score=118.43 Aligned_cols=203 Identities=11% Similarity=0.141 Sum_probs=43.7
Q ss_pred hhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 67 YTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 67 ~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
+-+.+++++++.+++.+.... |.|-...-..... +..+..+.+.++.+.|++. .++++|..+|+.+++.++.
T Consensus 12 nLGRs~l~~~a~~a~~~~a~~--Y~nLE~dl~~G~R-g~R~~~v~~ll~~ltgAea----A~VvNnnaAAv~L~l~~la- 83 (367)
T PF03841_consen 12 NLGRSPLSEEAIEAVAEVASG--YSNLEYDLETGKR-GSRYAHVEELLCELTGAEA----ALVVNNNAAAVLLALNTLA- 83 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc--ccccccccccccc-ccccccccccccccccccc----ccccccccccccccccccc-
Confidence 345667778888777654332 2232211111111 1225667788899999875 5667777789999998886
Q ss_pred CCCcEEEecCCCcch---hhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc----c
Q psy16512 147 NEGSFIYLTDNHTSV---LGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT----K 217 (815)
Q Consensus 147 ~~gdvv~~~~~h~s~---~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~----~ 217 (815)
...++|++..+-..+ +++-+.....| .+.+...+...+.+.++ +++++|.++...|.+|..-. .
T Consensus 84 ~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~t~~~Dye~-------AI~e~Ta~ll~Vh~Sn~~i~GFt~~ 156 (367)
T PF03841_consen 84 KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNRTHLSDYEK-------AITENTAALLKVHTSNFRIQGFTGE 156 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccc
Confidence 333488887654322 22334444455 55555555555556665 44588999999998888422 4
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccc---------cCCCC--CCCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---------CGSNM--LDLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---------~g~~~--~dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
.+++++.++++ +|++++++|..++ .+..| ...-+.++|++++|..|.+|+|. .|+++
T Consensus 157 ~~~~el~~la~-----------~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGiI~ 224 (367)
T PF03841_consen 157 VSLEELAELAK-----------EHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ-AGIIV 224 (367)
T ss_dssp ----HHHHHHH-----------HHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S--EEEE
T ss_pred ccHHHHHHHHh-----------hcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC-eEEEE
Confidence 58999999999 8999999997762 22221 12234589999999999999887 69999
Q ss_pred EecccccccC
Q psy16512 287 VKQKSAHVLN 296 (815)
Q Consensus 287 ~~~~~~~~l~ 296 (815)
.+++++++++
T Consensus 225 Gkk~lI~~lk 234 (367)
T PF03841_consen 225 GKKELIEKLK 234 (367)
T ss_dssp EEHHHHHHHH
T ss_pred eCHHHHHHHh
Confidence 9999998774
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-08 Score=105.76 Aligned_cols=343 Identities=13% Similarity=0.072 Sum_probs=191.1
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
.+++.+.++|.. =++.+.++|+ +.++++.++++||.+. +++|+.++.+..++...+...+|+
T Consensus 54 apS~~m~aAM~~-GDD~Y~gdpS------------v~~Lee~vael~G~E~----alpthqGRgaE~Il~~~~~~~~g~e 116 (467)
T TIGR02617 54 AVTQSMQAAMMR-GDEAYSGSRS------------YYALAESVKNIFGYQY----TIPTHQGRGAEQIYIPVLIKKREQE 116 (467)
T ss_pred CCCHHHHHHHHc-CCcccccCch------------HHHHHHHHHHHhCCce----EEECCCCchHHHHHHHhhccccccc
Confidence 477888888764 1222334555 8899999999999765 789989999999999888833676
Q ss_pred EEEecC----CCcchhh-HHHHhhccc--eEEc------------CchhhhcchhhhhhhhhhhhhcCCCccEEEEecc-
Q psy16512 151 FIYLTD----NHTSVLG-MRELVKTNQ--IYSF------------SVDDARNMLNEFKESQENVENMRHSNSLFVYPAE- 210 (815)
Q Consensus 151 vv~~~~----~h~s~~~-~~~~~~~~g--~v~~------------~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~- 210 (815)
+++... .|...+. ....+...| ...+ ...+.+++++++++|. +.-..+...+.++-.
T Consensus 117 ~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~---~~g~~~i~~v~~tlt~ 193 (467)
T TIGR02617 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIE---EVGPNNVPYIVATITC 193 (467)
T ss_pred ccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHh---hcCCCCceeeeeeEEE
Confidence 443332 2333222 222233333 1111 1245778888887654 111112222222222
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc-----------CCCCCCCCC------CCCcEEEEccc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-----------GSNMLDLKQ------HQPDFISISFY 273 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-----------g~~~~dl~~------~~~D~vv~S~~ 273 (815)
|.--|...|++.|.++.+ +|+++|+.+++|+|-.+ +....++.. ..+|.+.+|++
T Consensus 194 N~~GGqpvslenlr~V~~--------la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~sls 265 (467)
T TIGR02617 194 NSAGGQPVSLANLKAVYE--------IAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAK 265 (467)
T ss_pred ecCCCEEeCHHHHHHHHH--------HHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcC
Confidence 334588899887666555 44499999999986322 222222221 35899999999
Q ss_pred cccccCCcceEEEEecc----cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 274 KMFGYPTGLGALIVKQK----SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 274 K~~g~p~G~G~l~~~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|-+|.|-| |+|..+++ +.++.+.... .+ +-....|....--+.|+..+|... ..
T Consensus 266 KglgApvG-g~Lag~d~~~~~l~~~~~~~~i---------~~----------EGf~tYGGlagrd~ea~a~Gl~e~--~~ 323 (467)
T TIGR02617 266 KDAMVPMG-GLLCFKDDSFFDVYTECRTLCV---------VQ----------EGFPTYGGLEGGAMERLAVGLYDG--MN 323 (467)
T ss_pred CCCCCccc-ceEEecchhHHHHHHHHHhhcc---------cc----------cCCcCcCchhHHHHHHHHhhhhhc--cc
Confidence 99998866 67777665 2222221110 00 011234556666667776666543 22
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE----EecCCCCccCHHHHHHhh-hcCCcE
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN----LLHKDGTYYGYSEVQNLA-NLKKIQ 423 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~----~~~~~~~~~~~~~v~~~l-~~~gI~ 423 (815)
..+ ++-....++|.+.|.+. |+-+.. .+ |+-+.+. ++......+....+...| .+.||-
T Consensus 324 ~~yl~~ri~qv~yl~~~L~~~-------Gvpi~~-~G-------ghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR 388 (467)
T TIGR02617 324 LDWLAYRINQVQYLVNGLEEI-------GVVCQQ-AG-------GHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIR 388 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-------CCcEEe-cC-------ccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcc
Confidence 233 55566677888898886 454443 22 3333332 233444444333344444 666764
Q ss_pred e-ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 424 L-RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 424 v-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
. --|++ .+|-+++ .|+.. .-+-..+|+.+.-- =|.+.+|+.+++|..+..+....
T Consensus 389 ~~e~G~~--------~~~rd~~-----------~~~~~----~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~i 445 (467)
T TIGR02617 389 AVEIGSL--------LLGRDPK-----------TGKQL----PCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPNI 445 (467)
T ss_pred eEeecce--------ecccCCC-----------CCccC----CCccceeeeccccccccHhHHHHHHHHHHHHHhhhhhc
Confidence 2 11221 0111110 00000 00125799998742 16799999999999987666554
Q ss_pred c
Q psy16512 502 V 502 (815)
Q Consensus 502 ~ 502 (815)
.
T Consensus 446 ~ 446 (467)
T TIGR02617 446 K 446 (467)
T ss_pred C
Confidence 3
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-08 Score=103.74 Aligned_cols=160 Identities=12% Similarity=0.145 Sum_probs=108.0
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.|..+++.....+.. ..+.. ..+...+. ++-+|+.+|+++. +++++ |++|.|++.|+..++..+..
T Consensus 87 fp~Dai~RA~~~L~~-~gGs~-GaYS~SqG----v~~vR~~VA~~I~rRDG~p~~p~d--I~LT~GAS~ai~~il~l~~~ 158 (475)
T KOG0258|consen 87 FPTDAIKRAKRILND-CGGSL-GAYSDSQG----VPGVRKHVAEFIERRDGIPADPED--IFLTTGASPAIRSILSLLIA 158 (475)
T ss_pred CCHHHHHHHHHHHHh-cCCcc-cccccccC----ChhHHHHHHHHHHhccCCCCCHHH--eeecCCCcHHHHHHHHHHhc
Confidence 556666654333332 22211 11455555 8889999999873 45565 99999999999999998875
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
.+.+ |+++-+.||-+..-+....... .+.++++.. .+.+++++.+.+.+. .-++++.++.+|-||||.+..-+-
T Consensus 159 ~~~~GvliPiPQYPLYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k--~i~~r~lvvINPGNPTGqvls~e~ 236 (475)
T KOG0258|consen 159 GKKTGVLIPIPQYPLYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARK--GINPRALVVINPGNPTGQVLSEEN 236 (475)
T ss_pred CCCCceEeecCCCchhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhc--cCCceEEEEECCCCccchhhcHHH
Confidence 6666 9999999987765444433322 344555544 455555554432121 224788888999999999998777
Q ss_pred HHHHhhccccccccccCCCCeEEEEecc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
|.++++ +|.+.+++++-|..
T Consensus 237 ie~i~~--------fa~~~~l~llaDEV 256 (475)
T KOG0258|consen 237 IEGIIC--------FAAEEGLVLLADEV 256 (475)
T ss_pred HHHHHH--------HHHHcCeEEechHH
Confidence 777766 55599999999966
|
|
| >KOG2790|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-07 Score=93.36 Aligned_cols=327 Identities=17% Similarity=0.170 Sum_probs=201.6
Q ss_pred cccccchhhHHHHHHHHhhcc------ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec-CCchhhHHHHH
Q psy16512 69 GAGVYSQSQMNQTIEQLKENI------FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT-SGATSAIKTVS 141 (815)
Q Consensus 69 ~~~~~p~~v~~al~~~l~~~~------~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t-~g~t~al~~~~ 141 (815)
+...+|.+++.++++.+.+.. ..-.|+......+ ++.....+.++++++ ++|.|+|. .|+|..+.++.
T Consensus 14 GPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~ki----i~~tes~lreLlniP-dn~~vlf~QGGGt~qFaAv~ 88 (370)
T KOG2790|consen 14 GPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKI----INDTESLLRELLNIP-DNYKVLFLQGGGTGQFAAVP 88 (370)
T ss_pred CcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHH----HHHHHHHHHHHHcCC-CceeEEEEeCCCcccccccc
Confidence 344678888888877766421 2233444666666 999999999999995 56778776 45666655555
Q ss_pred hhhc-cCCC---cEEEecCCCcchh-hHHHHhhccc---eEEcCch-----hhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 142 EYFE-FNEG---SFIYLTDNHTSVL-GMRELVKTNQ---IYSFSVD-----DARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 142 ~al~-~~~g---dvv~~~~~h~s~~-~~~~~~~~~g---~v~~~~~-----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
..+. ...| |.|++. +.. ...+-+++.| .+..+.. ...+....+ .+++.+.|++|
T Consensus 89 lNL~glK~g~~AdYiVTG----sWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~---------~~~da~yvyyC 155 (370)
T KOG2790|consen 89 LNLIGLKHGRCADYVVTG----SWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWE---------LNPDASYVYYC 155 (370)
T ss_pred hhhhccccCCccceEEec----cccHHHHHHHHhhCCceEEeccccccccCcCCChhhcc---------cCCCccEEEEe
Confidence 5543 1334 333332 111 1333344555 2222111 111222222 24567799999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
...+.-|+-.+.-- +-. .+|.+++.|-.+-+-..|+|++.+ +++....+|..| |.|+-++++|
T Consensus 156 aNETVHGVEf~~~P---~~~-----------~~~~vlVaDmSSnflSrpvDvsk~--gvi~aGAQKN~G-~aG~Tvvivr 218 (370)
T KOG2790|consen 156 ANETVHGVEFDFIP---VND-----------PKGAVLVADMSSNFLSRPVDVSKF--GVIFAGAQKNVG-PAGVTVVIVR 218 (370)
T ss_pred cCceeeceecCCCC---CCC-----------CCCceEEEecccchhcCCccchhc--ceEEeccccccC-ccccEEEEEe
Confidence 88888888654322 112 678999999999888889999875 567889999999 9999999999
Q ss_pred cccccccCc---ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH---HHHHHHHHHH
Q psy16512 289 QKSAHVLNK---TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF---TNAFELSQYT 362 (815)
Q Consensus 289 ~~~~~~l~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~---~~~~~l~~~l 362 (815)
++++....+ ..+..-. .. ...--..|+|..+++.+...++++.+-|... +...+-++.+
T Consensus 219 ~dllg~~~~~tP~v~dyk~------------~~---~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~Kskll 283 (370)
T KOG2790|consen 219 KDLLGNALDITPSVLDYKI------------MD---KNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLL 283 (370)
T ss_pred hhhhcccccCCccccceee------------ec---cccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 998754332 2211100 00 0111235899999999999999988766433 6667778889
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC-cEeccCccCCchhhhhhcCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK-IQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g-I~v~~g~~~~~~~~~~~~g~ 441 (815)
++.+.+. .++-...-+. ..++-.-+.|++.+.. +.. ++.+.+.+++ |++. |
T Consensus 284 Yd~iD~s------~gfy~cpVe~---~~RS~MNV~Fri~~d~---Le~-eFLkeA~~~~mv~LK-G-------------- 335 (370)
T KOG2790|consen 284 YDAIDNS------NGFYRCPVEP---SVRSRMNVPFRIEKDE---LEA-EFLKEAAKEHMVQLK-G-------------- 335 (370)
T ss_pred HHHHHhc------CCeEEcccch---hhhhhcccceeecchH---HHH-HHHHHHHHhhhhccc-c--------------
Confidence 9999775 3443322111 1233345667765322 222 3344444433 3321 1
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+..|.||.|+--..+.+++.+|++.++++..
T Consensus 336 -----------------------hRSVGGiRASlYNAisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 336 -----------------------HRSVGGIRASLYNAISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred -----------------------ccccccchhhhhccccHHHHHHHHHHHHHHHH
Confidence 12248899999877899999999999998754
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-07 Score=101.66 Aligned_cols=335 Identities=11% Similarity=0.085 Sum_probs=186.2
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
.++..|+|..+. +--.+.+.+++.+++.... +..+ ... ..++.+.|.+.++. +. +.|++
T Consensus 72 ~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~------~~~----~~~lAe~l~~~~~~--~~--v~F~n 137 (453)
T PRK07046 72 VDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLP------SED----AAWVGEELARRFGL--PY--WQVAT 137 (453)
T ss_pred CCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCC------CHH----HHHHHHHHHHHhCC--CE--EEEEC
Confidence 345678785432 2334788888887776421 1111 122 44566677777753 33 99999
Q ss_pred CchhhHHHHHhhhccCCCc--EEEecCCCcchhh-HH-HHhhc-----c---c-eEEcCchh----hhcchhhhhhhhhh
Q psy16512 132 GATSAIKTVSEYFEFNEGS--FIYLTDNHTSVLG-MR-ELVKT-----N---Q-IYSFSVDD----ARNMLNEFKESQEN 194 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd--vv~~~~~h~s~~~-~~-~~~~~-----~---g-~v~~~~~~----~~~~~~~~~~l~~~ 194 (815)
++|+|...++....--.|. |+.....|..... .. ..... . + ...+..+. ..+++.+++.+.
T Consensus 138 SGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~-- 215 (453)
T PRK07046 138 TATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA-- 215 (453)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC--
Confidence 9999998887765422343 6655544433221 11 10000 0 1 00000000 012333333221
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc----cCCCCCCCCCCCCc
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY----CGSNMLDLKQHQPD 266 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~----~g~~~~dl~~~~~D 266 (815)
..+..+|++.-.....|.+.| ++++.++|+ ++|+++|+|+++. .|... ..-...||
T Consensus 216 ----~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~-----------~~g~llI~DEV~tfr~g~Gg~~-~~~gv~PD 279 (453)
T PRK07046 216 ----DGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTR-----------RYGTLLVIDETHTISSGPGGYT-RAHGLEPD 279 (453)
T ss_pred ----CCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HhCCEEEEEccccCccCCcchh-HHhCCCcc
Confidence 245788999888888888877 567888888 9999999999984 33211 11123589
Q ss_pred EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHHHH
Q psy16512 267 FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGFDT 344 (815)
Q Consensus 267 ~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~ 344 (815)
+++ +.|.+|+-.-+|+++.++++.+.+.+....... ...+..+| -|..++++..+.++.
T Consensus 280 i~t--~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~-----------------~~~~~~~T~~gnpl~~aa~~a~L~~ 340 (453)
T PRK07046 280 FLV--VGKPIAGGVPCAVYGFSAELAERAQAAKASAPP-----------------GHSGIGTTLSANALAMAAMRATLAE 340 (453)
T ss_pred cee--ehhhhcCCCcceeeeehHHHHHHHhhccccCCC-----------------CCceeCCCCcccHHHHHHHHHHHHH
Confidence 875 589777322278989998887655321100000 00011223 456677777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-C------ccC---HHHHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-T------YYG---YSEVQ 414 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~------~~~---~~~v~ 414 (815)
+.+. ...++..++-++|.+.|+++....+.+ ..+. ..+.++.+.+..... . ..+ ...+.
T Consensus 341 l~~~-~~~~~~~~~g~~l~~~L~~l~~~~~~~-~~v~---------g~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (453)
T PRK07046 341 VMTE-AAYAHMLALAARLAAGLRAVIARHGLP-WHVT---------RVGARVEFQFAPTPPRNGAEAAAALDPELEAALH 409 (453)
T ss_pred Hhcc-cHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEE---------EeCcEEEEEEeCCCCCCHHHHhcccCHHHHHHHH
Confidence 7543 224788888888888887642111111 1222 124555555532111 0 001 12344
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
..+.++||.+.+. .+.++++.. .|++||+++++++++.
T Consensus 410 ~~~~~~Gv~~~~~----------------------------------------~~~~~~~p~--~t~~did~~~~~~~~~ 447 (453)
T PRK07046 410 LYLLNRGVLITPF----------------------------------------HNMMLVCPA--TTAADVDRLVAAFDAC 447 (453)
T ss_pred HHHHHCCCEEecc----------------------------------------cCcEEEeCC--CCHHHHHHHHHHHHHH
Confidence 5566788887531 145778764 6999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
+.+
T Consensus 448 l~~ 450 (453)
T PRK07046 448 LGE 450 (453)
T ss_pred HHH
Confidence 743
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-07 Score=93.83 Aligned_cols=332 Identities=12% Similarity=0.098 Sum_probs=199.9
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|||.-+ .+--.+.++++++++.+.-.. .+..-..+. ..+..+.+.++||.+. ++-++.+
T Consensus 57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtl---ssrafYnd~----~~~f~~~vt~lf~~~k----vlpmnTG 125 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTL---SSRAFYNDV----LGEFAEYVTKLFGYDK----VLPMNTG 125 (427)
T ss_pred CccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhh---hhHHHhhhh----HHHHHHHHHHhcCcce----eeecccc
Confidence 4567777654 334557788887776553211 111112223 6678888999999765 7777777
Q ss_pred hhhHHHHHhhhc-c----C--CCc--EEEec-CCC-cchhhHHH------Hhhccc-eEEcCch--hhhcchhhhhhhhh
Q psy16512 134 TSAIKTVSEYFE-F----N--EGS--FIYLT-DNH-TSVLGMRE------LVKTNQ-IYSFSVD--DARNMLNEFKESQE 193 (815)
Q Consensus 134 t~al~~~~~al~-~----~--~gd--vv~~~-~~h-~s~~~~~~------~~~~~g-~v~~~~~--~~~~~~~~~~~l~~ 193 (815)
.+|.+.++.-.. | + |.+ ++++. .++ .-..+++. .....| ++|-..+ ..-+.++++.+|+
T Consensus 126 aEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~- 204 (427)
T KOG1402|consen 126 AEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALK- 204 (427)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhc-
Confidence 889888876654 3 1 323 44443 332 21222111 112223 3332111 1124445555443
Q ss_pred hhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~ 264 (815)
+++.+.+++.-.+-.-|++.| ++...++|+ +|++++|.|+.|..-. ...+.+...
T Consensus 205 -----~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCt-----------kynvl~I~DEvQTGl~RTGk~la~d~env~ 268 (427)
T KOG1402|consen 205 -----SPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCT-----------KYNVLLIADEVQTGLARTGKLLACDYENVR 268 (427)
T ss_pred -----CCCeeEEEeeccccccceEeCCchhHHHHHHHHH-----------hhcEEEEehhhhhcccccCcEEEeehhhcC
Confidence 577899999999999999998 556778888 9999999999876321 234556667
Q ss_pred CcEEEEcccccccc-CCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGY-PTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 265 ~D~vv~S~~K~~g~-p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
+|+++.. |.|++ ..-+..++..+++.-.++|-..|. .. .-|.++.....++++
T Consensus 269 PDivilg--KalSGG~~Pvsavl~~~~im~~~~pgeHgs-----------------------Ty-ggNpLg~~vaiAale 322 (427)
T KOG1402|consen 269 PDIVILG--KALSGGVYPVSAVLADDDIMLNIKPGEHGS-----------------------TY-GGNPLGCAVAIAALE 322 (427)
T ss_pred CCeEEEe--ccccCCeeeeEEEEecHHHHhccCCCcccc-----------------------cc-CCChHHHHHHHHHHH
Confidence 9998864 76661 111566677777764444432111 11 235566666778888
Q ss_pred HHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC
Q psy16512 344 TMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK 421 (815)
Q Consensus 344 ~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g 421 (815)
.+.+. .. ++...|-..++++|.+++- .+ .++.. ...+|-+..+.+........+.-++.-.+.++|
T Consensus 323 vi~ee--kL~era~~lG~~l~~~L~~l~~-----~~p~~v~~-----VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g 390 (427)
T KOG1402|consen 323 VIVEE--KLVERAAKLGEILRDQLNKLQK-----KFPHVVKE-----VRGRGLLNAIVINPSKTSGQDAWDVCLALKENG 390 (427)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHhccc-----cccchhhe-----eeccceEEEEEeccccccchhHHHHHHcccccc
Confidence 87764 33 8889999999999998831 11 01111 123455555555422222122223555667777
Q ss_pred cEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 422 IQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 422 I~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
....+- +...||++..+-.+++|++.-+++|.+.+.
T Consensus 391 ~LAkpt---------------------------------------H~~IiRfaPPL~I~e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 391 LLAKPT---------------------------------------HGNIIRFAPPLVISEEDLREGIEAIEKTIA 426 (427)
T ss_pred cccCCC---------------------------------------CCCeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence 665431 136899999999999999999999998753
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.8e-08 Score=100.99 Aligned_cols=326 Identities=13% Similarity=0.149 Sum_probs=184.3
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH-cCCC-----CCceeEEecCCchh
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY-FNTD-----SDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~-~g~~-----~~~~~iv~t~g~t~ 135 (815)
-+|-|..+..+.-+.|.++-..-+... .+.. +..-.. ....++.++++ ||.+ .+.-.-+-|.|+|.
T Consensus 34 GvY~de~Gk~pvl~aV~~Ae~~l~~~~--~~k~--Yl~i~G----~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTG 105 (396)
T COG1448 34 GVYKDEDGKTPVLRAVKKAEKRLLEQE--KTKN--YLPIEG----LPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTG 105 (396)
T ss_pred eeeeCCCCCcchhHHHHHHHHHhhccc--cccc--cCCcCC----cHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcch
Confidence 467777777777777666543322211 1111 111111 44555556654 5643 22212366899999
Q ss_pred hHHHHHhhhccC-CCc-EEEecCCCcchhhHHHHhhccc-eEE-cCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 136 AIKTVSEYFEFN-EGS-FIYLTDNHTSVLGMRELVKTNQ-IYS-FSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 136 al~~~~~al~~~-~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~-~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
|+.+.+.-+... +.. |-+++++.+......+.++... .++ .+.+ ..++.+.....|+ ...++..++.=...
T Consensus 106 AL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~----~a~~~~vvLLH~Cc 181 (396)
T COG1448 106 ALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLK----TAPEGSVVLLHGCC 181 (396)
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHH----hCCCCCEEEEecCC
Confidence 999998877532 223 7788877666655555444333 222 3332 3455555544332 22233344444667
Q ss_pred cCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecc-cccCCCCCCCCCC--------CC-cEEEEccccccc
Q psy16512 211 SNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAA-TYCGSNMLDLKQH--------QP-DFISISFYKMFG 277 (815)
Q Consensus 211 ~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a-~~~g~~~~dl~~~--------~~-D~vv~S~~K~~g 277 (815)
+||||.-.+.++ |.++.+ +.+++.++|-| ++++.. ++-+.+ ++ -+++.|++|.||
T Consensus 182 HNPTG~D~t~~qW~~l~~~~~-----------~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfg 249 (396)
T COG1448 182 HNPTGIDPTEEQWQELADLIK-----------ERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFG 249 (396)
T ss_pred CCCCCCCCCHHHHHHHHHHHH-----------HcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhh
Confidence 899999998776 455555 88999999965 444432 322221 22 477789999999
Q ss_pred cCCc--ceEEEEec---ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH--HHHh-h-
Q psy16512 278 YPTG--LGALIVKQ---KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD--TMEK-K- 348 (815)
Q Consensus 278 ~p~G--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~--~l~~-~- 348 (815)
..| +|++.+-. +.+.++...+. ..-|-...+|+..+.......|+ .+.. +
T Consensus 250 -LYgERVGa~~vva~~~~~a~~v~sqlk--------------------~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~ 308 (396)
T COG1448 250 -LYGERVGALSVVAEDAEEADRVLSQLK--------------------AIIRTNYSNPPAHGAAVVATILNNPELRAEWE 308 (396)
T ss_pred -hhhhccceeEEEeCCHHHHHHHHHHHH--------------------HHHHhccCCCchhhHHHHHHHhCCHHHHHHHH
Confidence 777 77766532 22222211110 01123334566555555444442 1211 1
Q ss_pred --hhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 349 --RKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 349 --~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
-..| +++.++|+.|.+.|++.. +. ..+..+.. +.+++++. + ++..++.++.+++||.+.
T Consensus 309 ~El~~Mr~Ri~~mR~~lv~~L~~~~--~~-~~f~~i~~--------Q~GMFsy~--G-----ls~~QV~rLree~~IY~v 370 (396)
T COG1448 309 QELEEMRQRILEMRQALVDALKALG--AP-RNFDFIIS--------QRGMFSYT--G-----LSPEQVDRLREEFGIYLV 370 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CC-cccchHhh--------cCceeecC--C-----CCHHHHHHHHHhccEEEe
Confidence 1233 899999999999998841 00 02444422 34555543 3 344568888899999875
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.. | |+++... +...|+++.++|.++
T Consensus 371 ~s-----------------------------------------G--Ri~vaGl-~~~ni~~va~ai~~v 395 (396)
T COG1448 371 AS-----------------------------------------G--RINVAGL-NTSNIDYVAKAIAAV 395 (396)
T ss_pred cC-----------------------------------------C--eeeeccC-ChhhHHHHHHHHHhh
Confidence 31 3 7787655 568899999998774
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.3e-07 Score=96.56 Aligned_cols=310 Identities=15% Similarity=0.088 Sum_probs=188.3
Q ss_pred hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC--Cc-EEEecCCCcchhh-HHHHhhccc-
Q psy16512 98 VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE--GS-FIYLTDNHTSVLG-MRELVKTNQ- 172 (815)
Q Consensus 98 ~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~--gd-vv~~~~~h~s~~~-~~~~~~~~g- 172 (815)
+.++..-+.+-+.+..++++.|.+-.+ --+--++|++-++++.+....+ .+ ++++...||.... +...++..|
T Consensus 113 EISQGrLqaLfefQtlv~dLTGm~VAN--ASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~ 190 (450)
T COG0403 113 EISQGRLEALFEFQTLVADLTGLDVAN--ASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGI 190 (450)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCCccc--chhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCce
Confidence 333333344667889999999988766 5666788888888888776433 23 9999999999776 455566666
Q ss_pred -eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc-cccChHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 173 -IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG-TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 173 -~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG-~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
.+..+.+ +.+.++. ..+..+..+++..|+ ..| ...++.+|.+++| ++|.+++|=+-
T Consensus 191 ~i~~~~~~---d~~~l~~-------~~~~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h-----------~~~al~~v~aD 248 (450)
T COG0403 191 EIEVVDAD---DLDDLES-------ADDGDVFGVLVQYPN-TFGIVEEDLRALIEAAH-----------SAGALVIVAAD 248 (450)
T ss_pred EEEEeccc---hhhhhhh-------ccccCeEEEEEecCC-CCCccchhHHHHHHHHh-----------hcCCEEEEEec
Confidence 3333333 3333332 113458899999987 556 6677999999999 78877765432
Q ss_pred -cccCCCCCCCCCCCCcEEEEcccc-----ccccCCcceEEEEecccccccCcccccCceEEEEecCC--ccccc---cc
Q psy16512 251 -TYCGSNMLDLKQHQPDFISISFYK-----MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANE--NFHIK---KD 319 (815)
Q Consensus 251 -~~~g~~~~dl~~~~~D~vv~S~~K-----~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~--~~~~~---~~ 319 (815)
-+++.. -...++++|+++.+.+- .||||. +|++.++++..+++.-.+.|- ..+... .+... ++
T Consensus 249 plaL~LL-~pPGe~GADIvvG~~QrfGvPmgfGGPh-ag~fA~~~~~~R~mPGRlVG~----S~D~~G~~A~rLaLQTRE 322 (450)
T COG0403 249 PLALGLL-KPPGEFGADIVVGSAQRFGVPMGFGGPH-AGYFAVKDEFKRQMPGRLVGV----SVDAAGKRAFRLALQTRE 322 (450)
T ss_pred hhHhhcc-CCccccCCceEEecCcccCCCcCCCCcc-eeeeeEhHhHhhcCCCceeee----eecCCCCchhhhhHHHHH
Confidence 122222 22346799999999986 455453 899999999876654333321 111111 11111 11
Q ss_pred CccccccCCCCChhHHHHHHHHHH--HHHhhhh----hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcc
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFD--TMEKKRK----SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQ 392 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~--~l~~~~~----~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~ 392 (815)
... |.+--|.|+....++.+-.. +....|. .+ .++.+++.++.++|++.. .++++.....
T Consensus 323 QHI-RReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~-----~g~~~~~~~f------- 389 (450)
T COG0403 323 QHI-RREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIG-----AGVELVFDHF------- 389 (450)
T ss_pred HHH-hhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcC-----CceEeccccc-------
Confidence 111 23445667655555433222 2222332 22 889999999999999661 2577775421
Q ss_pred cceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 393 GNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 393 ~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
-..+.++++. .. ...+.+.....||.++.-. ...+=
T Consensus 390 Fdt~~v~~~~-~~----~~~l~~~~~~~G~~L~~~~---------------------------------------~~~~~ 425 (450)
T COG0403 390 FDTFTVRVPE-EV----AEALLAAAIAGGINLRRVD---------------------------------------ADTVL 425 (450)
T ss_pred eeeEEEecch-hH----HHHHHHHHHhcCCceeeec---------------------------------------CCceE
Confidence 2334444432 11 1134555566777765310 13566
Q ss_pred EeccCCCCHHHHHHHHHHHHHH
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~ 494 (815)
+++.--+|++||+.|++++...
T Consensus 426 ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 426 IALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred EEeecccCHHHHHHHHHHHhhh
Confidence 7777778899999999998764
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-06 Score=98.09 Aligned_cols=346 Identities=11% Similarity=0.092 Sum_probs=188.3
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEec-
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFT- 130 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t- 130 (815)
.++..|+|..+ -+--.+.+.+++.+++.......+. ...... ..++-+++.+++...-. ...++|+
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~~~~~v~f~~ 133 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTL--DLTTPV----KDQFVQDLFASLPEAFAREAKIQFCG 133 (464)
T ss_pred CCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccccc--ccCCHH----HHHHHHHHHHhCcccccccceEEEeC
Confidence 34567777643 2345578888888777532211111 001111 33455556665532110 0136665
Q ss_pred CCchhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhcc------c-------eEEcCchhh------------h
Q psy16512 131 SGATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKTN------Q-------IYSFSVDDA------------R 182 (815)
Q Consensus 131 ~g~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~~------g-------~v~~~~~~~------------~ 182 (815)
+++++|+..++.......|. ||.....|.. ........... + .++...... .
T Consensus 134 ~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 213 (464)
T PRK06938 134 PTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRA 213 (464)
T ss_pred CCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHH
Confidence 78999998888765422344 6665544333 33322221110 0 122111100 1
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM 257 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~ 257 (815)
+.+.+++++... ....+++.+|++.-+....|.+.| ++++.++|+ ++|+++|+|+++. +|..-
T Consensus 214 ~~~~l~~~i~~~-~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~-----------~~giLlI~DEV~tGfGRtG 281 (464)
T PRK06938 214 NLHYLENLLDDP-ESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITE-----------EAGIPLIVDEIQSGFGRTG 281 (464)
T ss_pred HHHHHHHHHHhh-ccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCc
Confidence 122233322100 000125788888888777788776 445777777 9999999998864 33210
Q ss_pred ----CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 ----LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 ----~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.+.-...||++++ .|.+++-.-+|+++.+++. +.+.+... .....-|..
T Consensus 282 ~~~a~e~~gv~PDiv~~--gKglggG~PlsAv~~~~~~-~~~~~~~~------------------------~~T~~gnpl 334 (464)
T PRK06938 282 KMFAFEHAGIIPDVVVL--SKAIGGSLPLAVVVYREWL-DTWQPGAH------------------------AGTFRGNQM 334 (464)
T ss_pred HHHHHHhcCCCCCEEEe--eccccCCCceEEEeehhHh-hccCCCCC------------------------CCCCCcCHH
Confidence 1111235899877 5866631127888887763 33321100 001134566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-------
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT------- 406 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~------- 406 (815)
+.++..+.++.+.+. .-.++.+++-++|.+.|+++.. ..|.+.-+ ...|.++.+.+......
T Consensus 335 a~Aaa~a~L~~l~~~-~l~~~~~~~G~~l~~~L~~l~~--~~~~i~~V--------rG~Glm~gie~~~~~~~~~~~~~~ 403 (464)
T PRK06938 335 AMAAGSATLRYIKEH-RLAEHAAAMGERLREHLRQLQR--DYPQLGDV--------RGRGLMLGVEIVDPQGEPDALGHP 403 (464)
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH--hCCCeeee--------eccceEEEEEeccCcccccccccC
Confidence 777777778877653 1227888888888888877621 01222111 23477777877532110
Q ss_pred ccC---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYG---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
..+ ...+.+.+.++|+.+..+. ...+.||+.+.+-.|++|
T Consensus 404 ~~~~~~~~~~~~~~~~~Gll~~~~g-------------------------------------~~~~~l~~~Ppl~it~~e 446 (464)
T PRK06938 404 PANGELASLIQRECLRRGLILELGG-------------------------------------RHGSVVRFLPPLIITAEQ 446 (464)
T ss_pred CccHHHHHHHHHHHHHCCeEEeecC-------------------------------------CCCCEEEEECCCccCHHH
Confidence 000 1235666778998876421 012689999888899999
Q ss_pred HHHHHHHHHHHHhh
Q psy16512 484 VKYFLSFLNQYFLQ 497 (815)
Q Consensus 484 i~~lv~~L~~~~~~ 497 (815)
++.+++++++.+.+
T Consensus 447 id~~~~~l~~~l~~ 460 (464)
T PRK06938 447 IDEVAEIFAEAVAA 460 (464)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-06 Score=96.29 Aligned_cols=346 Identities=12% Similarity=0.129 Sum_probs=188.3
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeE-EecCC
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSV-IFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i-v~t~g 132 (815)
++..|+|..+. +--.+++.+++.+++......... ...... ..++-+++.+.+......+.+ +++++
T Consensus 56 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~--~~~~~~----~~~lAe~L~~~~p~~~~~~~~~f~~~S 129 (459)
T PRK06931 56 EGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTL--DLTTPL----KDAFSEYLLSLLPGQGKEYCLQFTGPS 129 (459)
T ss_pred CCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccccc--ccCCHH----HHHHHHHHHHhCCCccccceEEEeCCC
Confidence 45567776442 344578888887776532111110 011122 456667777776432111124 55689
Q ss_pred chhhHHHHHhhhccCCCc--EEEecCCCcc-hhhHHHHhhcc-----------c--eEEcCchh--------hhcchhhh
Q psy16512 133 ATSAIKTVSEYFEFNEGS--FIYLTDNHTS-VLGMRELVKTN-----------Q--IYSFSVDD--------ARNMLNEF 188 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd--vv~~~~~h~s-~~~~~~~~~~~-----------g--~v~~~~~~--------~~~~~~~~ 188 (815)
+++|++.++.....-.|. ||.....|.. ........... + .++..... ..+.+.+.
T Consensus 130 GsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (459)
T PRK06931 130 GADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALT 209 (459)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHH
Confidence 999998887754322333 6666554443 32322221110 1 11111100 00111111
Q ss_pred hhhhhhhhh---cCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----
Q psy16512 189 KESQENVEN---MRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN---- 256 (815)
Q Consensus 189 ~~l~~~~~~---~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~---- 256 (815)
..+.+.... ..++..+|++.-+....|.+.| ++++.++|+ ++|+++|+|+++. +|..
T Consensus 210 ~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~-----------~~g~LlI~DEV~tGfGRtG~~~ 278 (459)
T PRK06931 210 YYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQ-----------KHGILLIVDEVQAGFARTGKMF 278 (459)
T ss_pred HHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecchhcCCcCchHH
Confidence 111111111 1234788888888877788776 555777777 9999999999865 3311
Q ss_pred CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 257 MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 257 ~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
....-...||++++ .|.+++-.-+|++..+++. +.+.+... ....+-|..+.+
T Consensus 279 a~~~~gv~PDivt~--gK~l~gG~Pi~av~~~~~~-~~~~~~~~------------------------~~T~~gnpla~a 331 (459)
T PRK06931 279 AFEHAGIEPDIIVM--SKAVGGGLPLAVLGIKKEF-DAWQPGGH------------------------TGTFRGNQLAMA 331 (459)
T ss_pred HhhhcCCCCCEEEe--cccccCCcceeeeeeHHHH-hhccCCCC------------------------CCCCCCCHHHHH
Confidence 01112235898776 6866621116777776553 33321110 001134566777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-------ccC
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-------YYG 409 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-------~~~ 409 (815)
+..+.++.+.+.+ ..++..++-++|.+.|+++.. ..|.+.-+ ...|.++.+.+...... ..+
T Consensus 332 aala~L~~l~~~~-l~~~~~~~G~~l~~~L~~l~~--~~~~i~~v--------rG~Glm~giel~~~~~~~~~~~~~~~~ 400 (459)
T PRK06931 332 TGLTTLKILKEEN-LAQNAAERGEWLKAQLAELQK--RYPCIGNV--------RGRGLMIGIEIVDERQPADAMGSYPAD 400 (459)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHH--hCCCeEeE--------ecCceEEEEEEccCcccccccccCCcc
Confidence 7777888776541 238888888888888877621 01222111 23477788877532110 000
Q ss_pred ---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 ---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.+.++||.+.+.. ...+.+|+.+.+..|++|++.
T Consensus 401 ~~~~~~~~~~~~~~Gvl~~~~~-------------------------------------~~~~~l~~~Ppl~it~~eid~ 443 (459)
T PRK06931 401 GELAAAIQKACFENGLLLERGG-------------------------------------RNGNVVRLLPPLLITQAECEE 443 (459)
T ss_pred HHHHHHHHHHHHHCCcEEeecC-------------------------------------CCCCEEEEECCCCcCHHHHHH
Confidence 1235566778999886421 012679999999999999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++.+.+
T Consensus 444 ~~~~l~~~l~~ 454 (459)
T PRK06931 444 FIDRFEQALLA 454 (459)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-07 Score=96.34 Aligned_cols=316 Identities=14% Similarity=0.124 Sum_probs=181.6
Q ss_pred CCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEE-EecCCCcchhhHHHHhhc
Q psy16512 92 HPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFI-YLTDNHTSVLGMRELVKT 170 (815)
Q Consensus 92 np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv-~~~~~h~s~~~~~~~~~~ 170 (815)
.|-..+...+. .-.+..+||+++|++.. |++..|.+ ++..++-++. ..||++ +....+..+....++.+.
T Consensus 130 GPrGFYGt~Dv----HldlE~~iakF~G~E~a---ivYs~gF~-ti~S~ipafs-KrGDIi~~de~~nfaIq~GlqlSRS 200 (467)
T KOG1358|consen 130 GPRGFYGTIDV----HLDLEKRIAKFMGTEDA---IVYSYGFS-TIESAIPAFS-KRGDIIFVDEAVNFAIQKGLQLSRS 200 (467)
T ss_pred CCCccccccee----ecccHHHHHHhhCCcce---eeeccccc-hhhhcchhhh-ccCcEEEEehhhhHHHHHHHhhhhh
Confidence 34444555555 66889999999999764 88877776 7788888898 999944 444444444444444444
Q ss_pred cceEEcCchhhhcchhhhhhhhhhhhhcCC---C-ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEE
Q psy16512 171 NQIYSFSVDDARNMLNEFKESQENVENMRH---S-NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVL 246 (815)
Q Consensus 171 ~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~---~-t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vi 246 (815)
.+ ..+..++..+++++....+ .+..-.+ . .+.+++....-++|.+.|+.+|.++.. ++...++
T Consensus 201 ~i-~~Fkhndm~~lerll~E~~-~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~-----------Kyk~Rvi 267 (467)
T KOG1358|consen 201 TI-SYFKHNDMEDLERLLPEQE-DEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKN-----------KYKFRVI 267 (467)
T ss_pred ee-EEecCCCHHHHHHhccCcc-hhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHh-----------hheEEEE
Confidence 44 2223333223322211000 0000011 1 467888999999999999999999998 8999999
Q ss_pred EecccccCCC---------CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccccc
Q psy16512 247 LDAATYCGSN---------MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIK 317 (815)
Q Consensus 247 vD~a~~~g~~---------~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 317 (815)
+|...++|.. .+.+..-..|++++|+.-.++ - |-|+...+.-.++ . ..+-|.+
T Consensus 268 ldEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s-~GgFc~G~~~i~~-h-QrLSg~~-------------- 329 (467)
T KOG1358|consen 268 LDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-S-GGGFCAGKSFIAD-H-QRLSGSG-------------- 329 (467)
T ss_pred EecccccccccccCccccccCCCCccceeeeeeccccccc-c-cCceeecceeeEe-e-eeccccc--------------
Confidence 9988777642 222332357899999887777 2 2345444332221 1 1111111
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEE
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVN 397 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~ 397 (815)
.-|....|++... |+..++..+.+.....+..+.....+...|+.. .++.+.+... ++++-
T Consensus 330 -----Y~fSAslPp~la~-aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~------s~~~v~~~~~-------SPi~h 390 (467)
T KOG1358|consen 330 -----YCFSASLPPYLAG-AAIKAILIEEWNPEIVQPLRAKVAKFHAALSSN------SGFIVSGSPE-------SPIIH 390 (467)
T ss_pred -----eeeeccCchhhhh-hHHHHHHHHhhCcchhhhhhccccccchhhhcC------CceEEecCcC-------Cceee
Confidence 1233334444433 334555555444332256666666777777765 5777776554 67777
Q ss_pred EEEecCCCCcc----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEE
Q psy16512 398 FNLLHKDGTYY----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRI 473 (815)
Q Consensus 398 f~~~~~~~~~~----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRv 473 (815)
+.+....+..- -..++.......|+.+..... .. ++ .. ...+-.||+
T Consensus 391 l~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~-----~~---~~------------e~---------~~~~pSiri 441 (467)
T KOG1358|consen 391 LQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKY-----LE---KL------------ER---------CPIPPSIRI 441 (467)
T ss_pred eeecccccchHHHHHHHHHHHHHHHhhcceehhhhh-----hh---hc------------cc---------CCCCCcEEE
Confidence 77665322210 011222222223655532100 00 00 00 111357999
Q ss_pred eccCCCCHHHHHHHHHHHHHHH
Q psy16512 474 SYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 474 s~g~~~t~edi~~lv~~L~~~~ 495 (815)
++....++||++++.+.|++..
T Consensus 442 ~~~a~~seeel~ra~~~ik~~~ 463 (467)
T KOG1358|consen 442 CVSAGMSEEELERAAELIKEVA 463 (467)
T ss_pred EEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999864
|
|
| >PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-09 Score=93.84 Aligned_cols=47 Identities=40% Similarity=0.698 Sum_probs=44.5
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
.||+|||+..++++++|++++|.|+.|++|+ ||+|++||||+++.++
T Consensus 46 ~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~------Pi~t~~G~hIlkv~~r 92 (93)
T PRK15441 46 RGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------PLHTQFGYHIIKVLYR 92 (93)
T ss_pred cCccceeecccccCHHHHHHHHhCCCCCcCC------cEEcCCEEEEEEEEec
Confidence 6899999999999999999999999999998 8899999999999764
|
|
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.3e-08 Score=103.25 Aligned_cols=251 Identities=13% Similarity=0.115 Sum_probs=155.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-------CCC-----c--EEEecCCCcchhhHHHHhhccc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-------NEG-----S--FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-------~~g-----d--vv~~~~~h~s~~~~~~~~~~~g 172 (815)
..++-..+.+..|.+... +-+|++|++-++.-++.+... ..| + +.++..+|.|+.....+++ .|
T Consensus 143 E~~vl~km~~ivGw~~~~-DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg-~g 220 (510)
T KOG0629|consen 143 EEEVLAKMREIVGWEEGG-DGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLG-LG 220 (510)
T ss_pred hHHHHHHHHHHhCCCCCC-CceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhc-cC
Confidence 456777778888888751 268999988777666655431 122 2 4455667988877666554 23
Q ss_pred -----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEE
Q psy16512 173 -----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLL 247 (815)
Q Consensus 173 -----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~viv 247 (815)
.++.+..+.+.++++++.|.+.. +..-.+.+|..++.++..|...|++.|+++|+ +|++|++|
T Consensus 221 td~c~~v~t~e~Gkm~~~dLe~kile~k-~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~-----------k~~lWmHv 288 (510)
T KOG0629|consen 221 TDHCIKVKTDERGKMIPDDLEKKILEAK-AKGGVPFFVNATAGTTVLGAFDDLNGIADICE-----------KHKLWMHV 288 (510)
T ss_pred CceeEEecccccCccchHHHHHHHHHHH-hcCCCCeEEEecCCceeeeccCcHHHHHHHHH-----------hcCEEEEe
Confidence 56677778888999887554211 11223789999999999999999999999999 89999999
Q ss_pred ecccccCCCCCC-----CCC-CCCcEEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCccc-cccc
Q psy16512 248 DAATYCGSNMLD-----LKQ-HQPDFISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFH-IKKD 319 (815)
Q Consensus 248 D~a~~~g~~~~d-----l~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~-~~~~ 319 (815)
|||.+.|..-.- +.. ..+|.+..+.||+.|.|--++..+.+.+- +++.... ...+......+| +.++
T Consensus 289 DAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~-----~A~YLFq~dK~YdvS~D 363 (510)
T KOG0629|consen 289 DAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQM-----SAIYLFQQDKFYDVSYD 363 (510)
T ss_pred ecccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhccc-----chhhhhccCceeecccc
Confidence 999887653111 111 24789999999999988777777777543 2111100 000111111111 2223
Q ss_pred CccccccCC-CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 320 GLFEKFEDG-TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 320 ~~~~~~~~g-t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
..-...+-| ..+..-++-+..+-.+ ........++.++++|+.+.|++. ++.+.+..
T Consensus 364 TgdK~iQCGRh~D~FKlWlmwkaKG~-~Gfe~~v~k~~~lA~yl~~~lrer------~~~~~l~~ 421 (510)
T KOG0629|consen 364 TGDKAIQCGRHVDVFKLWLMWKAKGT-QGFEAQVDKCLRLAEYLYDRLRER------EGFEMLFE 421 (510)
T ss_pred cccchhhcCccccHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHhc------ccceehhc
Confidence 222333333 2333323322222111 011112288999999999999988 67666544
|
|
| >PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.9e-09 Score=98.34 Aligned_cols=48 Identities=38% Similarity=0.771 Sum_probs=44.5
Q ss_pred CCCCcccccc-CCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVV-RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~-~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+. .++++++|++++|.+++|++|. ||+|++|||||++.++
T Consensus 68 ~~gG~lgw~~~~~~~~~~f~~~~~~l~~G~is~------~v~s~~G~hIikv~dr 116 (117)
T PF13616_consen 68 ENGGDLGWMSEPSQLPPEFEEAAFSLKVGEISG------PVESPNGYHIIKVTDR 116 (117)
T ss_dssp GGTTEEEEEETTTSSSCHHHHHHHHS-TTECTC------EEEETTEEEEEEEEEE
T ss_pred ccCCccccccCCccccHHHHHHHHcCCCCCCCC------eEEECCEEEEEEEEee
Confidence 4899999999 9999999999999999999998 8899999999999875
|
|
| >PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5 | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-09 Score=93.80 Aligned_cols=47 Identities=49% Similarity=0.830 Sum_probs=44.5
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
-+||+|||+..++|+++|++++|.|++|++|. |++|++|||||++++
T Consensus 49 ~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~------pi~t~~G~~Ii~v~d 95 (95)
T PF00639_consen 49 ENGGDLGWISRGQLPPEFEKALFALKPGEVSK------PIETDNGYHIIKVED 95 (95)
T ss_dssp GGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE------EEEETTEEEEEEEEE
T ss_pred cccCccccccCCcccHHHHHHHHhCCCCCcCC------CEEECCEEEEEEEEC
Confidence 57999999999999999999999999999998 889999999999864
|
2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A .... |
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.4e-07 Score=94.49 Aligned_cols=309 Identities=13% Similarity=0.056 Sum_probs=181.8
Q ss_pred HHHHHHHhHcCCCCC-------ceeEEecCCchhhHHHHHhhhcc--------C-----C----Cc-EEEe-cCCCcchh
Q psy16512 109 QMRTKILQYFNTDSD-------HYSVIFTSGATSAIKTVSEYFEF--------N-----E----GS-FIYL-TDNHTSVL 162 (815)
Q Consensus 109 ~~r~~la~~~g~~~~-------~~~iv~t~g~t~al~~~~~al~~--------~-----~----gd-vv~~-~~~h~s~~ 162 (815)
-+.++++++++.+.. +=.-++..+++++...++.+... + . ++ |+|. +..|.|+-
T Consensus 117 ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y~SDqahssve 196 (511)
T KOG0628|consen 117 IVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAYCSDQAHSSVE 196 (511)
T ss_pred HHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEEecCcccchHH
Confidence 355777777765421 00134555666776666555431 1 1 23 5555 45687775
Q ss_pred hHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCC--ccEEEEecccCCCccccChHHHHHHhhccccccccccC
Q psy16512 163 GMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHS--NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 163 ~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~--t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~ 239 (815)
.....+.-+- .++.+.+..+..+.++++|+ +.+... +.+++.+-..+.+-...++++|..+|+
T Consensus 197 ka~~i~~VklR~l~td~n~~mr~~~L~~AIe---~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~----------- 262 (511)
T KOG0628|consen 197 KACLIAGVKLRALPTDENFGMRGDTLRKAIE---EDIARGLIPFFVCATLGTTSSCAFDELEELGPVCR----------- 262 (511)
T ss_pred HhHhhcceeEEEeecccCcCCCHHHHHHHHH---HHHhCCCccEEEEEeecCccccccccHHHhcchhh-----------
Confidence 5333332111 66677766778888877664 233222 566666777766667778999999999
Q ss_pred CCCeEEEEecccccCCCCC-CCCC-----CCCcEEEEccccccccCCcceEEEEeccc-cc---ccCcccccCceEEEEe
Q psy16512 240 RSNCFVLLDAATYCGSNML-DLKQ-----HQPDFISISFYKMFGYPTGLGALIVKQKS-AH---VLNKTFYGGGTVKISM 309 (815)
Q Consensus 240 ~~gi~vivD~a~~~g~~~~-dl~~-----~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~---~l~~~~~g~~~~~~~~ 309 (815)
++|+|++||+|++..+.-. .+.. ..+|.+.+..|||+..--.+..|++++.. +. .+.|.+..+.......
T Consensus 263 ~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~ 342 (511)
T KOG0628|consen 263 EEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAP 342 (511)
T ss_pred hcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCC
Confidence 9999999999987443211 1111 14799999999999855568889998762 11 2345554443333333
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHH--HHHHH--hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYG--FDTME--KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTD 385 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a--l~~l~--~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~ 385 (815)
++..|-++ +.+||+ ++... ++.+. .+...+++..+|++.+.+.+.+- +.+++..+..
T Consensus 343 Dyrhwqip---l~rRfR----------SLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d------~~FE~~~~~~ 403 (511)
T KOG0628|consen 343 DYRHWQIP---LGRRFR----------SLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRAD------PRFEIVNKRI 403 (511)
T ss_pred Cccccccc---cccchh----------hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC------Ccceeecccc
Confidence 34444322 122222 22221 12111 11112267777888877777665 6889887653
Q ss_pred CCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 386 YGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 386 ~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
-++++|++.+.+. ++. .+.+.+ ....|.+.+.++ .
T Consensus 404 -------lgLvcFRlk~~N~--~ne-~Ll~~in~~g~i~l~~~~l------~---------------------------- 439 (511)
T KOG0628|consen 404 -------LGLVCFRLKGDNE--INE-ALLNRLNSSGRIHLVPASL------H---------------------------- 439 (511)
T ss_pred -------cceeEEeecCCcH--HHH-HHHHHHHhcCcEEEEEeee------c----------------------------
Confidence 7899999987632 222 244444 445566654321 1
Q ss_pred CCCceEEEEeccC-CCCHHHHHHHHHHHHHHHh
Q psy16512 465 GKPTGSIRISYGH-ASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 465 ~~~~g~iRvs~g~-~~t~edi~~lv~~L~~~~~ 496 (815)
| .-.||+.++. .++.+||++..+.|.+...
T Consensus 440 g--k~vlRf~V~s~~t~~~di~~a~~~I~~~a~ 470 (511)
T KOG0628|consen 440 G--KFVLRFAVCSPLTNESDIDEAWKIIFEAAD 470 (511)
T ss_pred c--eEEEEEEecCCCCcHHHHHHHHHHHHHHHH
Confidence 1 2579999875 4688999999888877543
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=90.49 Aligned_cols=339 Identities=16% Similarity=0.166 Sum_probs=190.8
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
..+..|||..+. +--.+++.+++.+++.. .....+.+. ...+.++-+.|+..|-.+-.. ++|+++
T Consensus 47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~--l~H~t~~~~-----~~pi~~~Ae~L~s~~P~~l~~--vfF~ns 117 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKK--LYHTTSGYL-----NPPIHDLAEALVSKLPGDLKV--VFFVNS 117 (442)
T ss_pred CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhh--hEEeecccc-----CCcHHHHHHHHHHhCCCCceE--EEEecC
Confidence 345677886652 23447888888777642 122222221 122556667777777555554 899999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcchhh-HHHH---hhccceEE---------cCch-------h---hhcchhh
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTSVLG-MREL---VKTNQIYS---------FSVD-------D---ARNMLNE 187 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s~~~-~~~~---~~~~g~v~---------~~~~-------~---~~~~~~~ 187 (815)
+++|+++++.-... +.-|+|.....|..... ...+ .-.+..++ ++++ + ...-++.
T Consensus 118 GsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~ 197 (442)
T KOG1404|consen 118 GSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRY 197 (442)
T ss_pred CchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHH
Confidence 99999988765542 33456655544332211 1111 11111000 0110 0 0001111
Q ss_pred hhhhhhh-hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CC--CCCC
Q psy16512 188 FKESQEN-VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GS--NMLD 259 (815)
Q Consensus 188 ~~~l~~~-~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~--~~~d 259 (815)
.+.+..+ ..........++...+.-.-|.+.+ +++..++|+ ++|.++|.|+++.. |. ....
T Consensus 198 a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~-----------k~Ggl~IaDEVqtGfGRtG~~wg 266 (442)
T KOG1404|consen 198 AKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVR-----------KRGGLFIADEVQTGFGRTGHMWG 266 (442)
T ss_pred HHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHH-----------HcCCEEEehhhhhcccccccccc
Confidence 1111111 1112233567777888888888876 556677777 89999999988653 21 1122
Q ss_pred CCCCC--CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 LKQHQ--PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 l~~~~--~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
++..+ ||+ .|..|.+|.-.-+|+++..+++++.+...... .++.|..+. +.++
T Consensus 267 fe~h~v~PDI--vTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~----------------------fnTyggnP~-a~av 321 (442)
T KOG1404|consen 267 FESHGVVPDI--VTMAKGIGNGFPLGAVVTTPEIADVLNQKSSH----------------------FNTYGGNPV-ACAV 321 (442)
T ss_pred ccccCCCccH--HHHHhhccCCCcceeeecCHHHHHHHHhcccc----------------------ccccCCCch-hHHH
Confidence 23333 666 46779887433389999999987655332210 122233333 3334
Q ss_pred HHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc-----CHH
Q psy16512 338 LKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY-----GYS 411 (815)
Q Consensus 338 l~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~-----~~~ 411 (815)
..+.|+.+.+. .+ ++......+|.+.|.++. ....++++- +..|-++-+++.+...+.. .-.
T Consensus 322 g~aVL~Vikee--~LqE~aa~vG~yl~~~l~~l~-----d~h~iIGdV-----RG~GLm~GvE~V~dk~~~~pp~~~~~~ 389 (442)
T KOG1404|consen 322 GLAVLKVIKEE--NLQENAAEVGSYLLEKLAALK-----DKHPIIGDV-----RGRGLMLGVELVSDKSEPKPPATAEGA 389 (442)
T ss_pred HHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHh-----hcCCceeec-----ccceeEEEEEEecccCCCCCcchHHHH
Confidence 44667776653 23 778888889999988773 233444432 3446666676654331111 112
Q ss_pred HHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
.+.+.+.+.|+.+..|. .....+|++..++-|.+||+.+++..
T Consensus 390 ~i~~~cke~Gvlvg~g~-------------------------------------i~G~vfriaPPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 390 VIGEQCKELGVLVGKGG-------------------------------------IHGNVFRIAPPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHhCeeeeccc-------------------------------------ccceEEEecCCeeccHHHHHHHHHHH
Confidence 35566788888885442 23468999999999999998877755
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-07 Score=92.60 Aligned_cols=198 Identities=10% Similarity=0.028 Sum_probs=111.8
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec--CCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT--SGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t--~g~t~al~~~~~al~~~~gd-v 151 (815)
..+++++.+.-.....-++.+.+...+. -.+.+.+..|+.||++.. +|=. -++|+||.+++.++. +||| +
T Consensus 27 ~KVL~Af~~~~vs~~hf~~tTGYGY~D~---GRd~le~iyA~vfgaE~A---LVRpq~vSGTHAi~~~Lfg~L-rpGD~l 99 (403)
T PF06838_consen 27 LKVLKAFQENRVSDSHFAGTTGYGYDDI---GRDKLERIYADVFGAEDA---LVRPQFVSGTHAIALALFGVL-RPGDEL 99 (403)
T ss_dssp HHHHHHHHHTT--GGGCS---TT-TT-H---HHHHHHHHHHHHCT-SEE---EEETTS-SHHHHHHHHHHHH---TT-EE
T ss_pred HHHHHHHHHcCCChhhcCCCCcCCCCCc---cHHHHHHHHHHHhCchhh---hhcccccchHHHHHHHHHhcC-CCCCeE
Confidence 4555555443221122233334444443 255677788999998764 3322 578899999999999 9999 4
Q ss_pred EEec-CCCcchhhHHHHhh-------ccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc--
Q psy16512 152 IYLT-DNHTSVLGMRELVK-------TNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK-- 217 (815)
Q Consensus 152 v~~~-~~h~s~~~~~~~~~-------~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~-- 217 (815)
+... ..|-++...+...+ ..| .+++.+++.+|.+.+.++++ ++||+|.+.- ..|.-
T Consensus 100 l~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~-------~~tk~v~IQR---SrGYs~R 169 (403)
T PF06838_consen 100 LSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK-------PNTKMVLIQR---SRGYSWR 169 (403)
T ss_dssp EESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH-------TTEEEEEEE----S-TTSSS
T ss_pred EEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc-------cCceEEEEec---CCCCCCC
Confidence 4332 33444444443322 122 56677788889988887553 7899999963 34442
Q ss_pred --cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccccc---CCcceEEEEecccc
Q psy16512 218 --YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY---PTGLGALIVKQKSA 292 (815)
Q Consensus 218 --~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~---p~G~G~l~~~~~~~ 292 (815)
+.+++|.++++.++ ....+++++||.+++=-.........++|+++.|+-|..|+ |+ -||+..+++++
T Consensus 170 ~sl~i~~I~~~i~~vk------~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiApt-GGYIaGr~~lV 242 (403)
T PF06838_consen 170 PSLTIEEIKEIIKFVK------EINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPT-GGYIAGRKDLV 242 (403)
T ss_dssp ----HHHHHHHHHHHH------HH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHH
T ss_pred CCCCHHHHHHHHHHHH------hhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCc-CCEEechHHHH
Confidence 34666666655210 12679999999998655544445566899999999997663 33 49999999988
Q ss_pred cccC
Q psy16512 293 HVLN 296 (815)
Q Consensus 293 ~~l~ 296 (815)
++..
T Consensus 243 e~~a 246 (403)
T PF06838_consen 243 ERAA 246 (403)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=95.86 Aligned_cols=259 Identities=14% Similarity=0.136 Sum_probs=147.1
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+.-.+.+.+++.+++....+.++. ...... ..++-++|.+.++-..+ .+.|+++++
T Consensus 15 G~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~--~~~~~~----~~~la~~L~~~~p~~~~--~v~f~~sGs 86 (339)
T PF00202_consen 15 GREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFS--GFTHPE----AAELAEKLAELFPGGLD--RVFFANSGS 86 (339)
T ss_dssp SEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTT--TSEEHH----HHHHHHHHHHHSSTTEE--EEEEESSHH
T ss_pred CCEEEECCCCccceecCCCccccchhHHHHhhhccccccc--ceeccc----hhhhhhhhhhccccccc--eeeeccCch
Confidence 344666543 2334477778777766543332211 111222 56777888888843333 499999999
Q ss_pred hhHHHHHhhhc------cCCCc--EEEecCCCcc-hhhHHHHhhc------cc-------eEEcCchhh-----hcchhh
Q psy16512 135 SAIKTVSEYFE------FNEGS--FIYLTDNHTS-VLGMRELVKT------NQ-------IYSFSVDDA-----RNMLNE 187 (815)
Q Consensus 135 ~al~~~~~al~------~~~gd--vv~~~~~h~s-~~~~~~~~~~------~g-------~v~~~~~~~-----~~~~~~ 187 (815)
+|++.++.... ..++. |+.....|.. .......... .. .+|.+.... .....+
T Consensus 87 eAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 166 (339)
T PF00202_consen 87 EAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNAL 166 (339)
T ss_dssp HHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHH
Confidence 99998887665 23343 6666655443 3222222111 01 233332111 011111
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCC--CC--
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSN--ML-- 258 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~--~~-- 258 (815)
++.+ .+...++..+|++.-+....|...+ +++|.++|+ ++|+++|+|+++.. |.. .+
T Consensus 167 ~~~~---~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~-----------~~gillI~DEV~tG~gRtG~~~a~ 232 (339)
T PF00202_consen 167 EELI---AALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCR-----------EHGILLIADEVQTGFGRTGKFFAS 232 (339)
T ss_dssp HHHH---HHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHH-----------HTT-EEEEEETTTTTTTTSSSSGH
T ss_pred HHHH---HhhcCCcEEEEEEeccccccCccccccchhhehccccc-----------ccccceecccccccccccCCccce
Confidence 1111 1222456789999888888787765 455777777 99999999988763 221 11
Q ss_pred CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
+.....||+++++ |.+++-.-+|.+++++++.+.+.+...+. ...-+..++++.
T Consensus 233 ~~~gv~PDiv~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~~~------------------------T~~g~p~~~aaa 286 (339)
T PF00202_consen 233 EHYGVDPDIVTFG--KGLGGGLPISAVLGSEEIMEAFQPGSHGS------------------------TFGGNPLSCAAA 286 (339)
T ss_dssp HHHTSSSSEEEEE--GGGGTTSSEEEEEEEHHHHTTSCTTSSTC------------------------TTTT-HHHHHHH
T ss_pred ecccccCcccccc--cchhhhhhcccccccchhhcccccccccc------------------------ccccchHhhhhh
Confidence 1122468998886 97773333799999998876553221100 112345667777
Q ss_pred HHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhc
Q psy16512 339 KYGFDTMEKKRKSF-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 339 ~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l 369 (815)
.+.++.+.+. .. +++.++.+++.+.|+++
T Consensus 287 ~~~l~~~~~~--~~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 287 LATLEILEEE--DLLERVRELGERLREGLREL 316 (339)
T ss_dssp HHHHHHHHHT--THHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhccH--HHHHHHHHHHHHHHHHHHHH
Confidence 7777777654 23 77788888888888766
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-05 Score=90.01 Aligned_cols=258 Identities=12% Similarity=0.059 Sum_probs=136.3
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
.++..|+|..+ -+--.+.+.+++.+++.... +.++. .. ..++.++|++++.. .+ .+.|++
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~------~~----~~~la~~l~~~~p~-~~--~v~f~~ 111 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNFTRPS------AI----ELDAAESFLELIDG-AD--MVKFCK 111 (431)
T ss_pred CCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCCCCCC------HH----HHHHHHHHHHhCCc-cc--eEEEec
Confidence 34566777643 23345778888877776421 11111 11 22556677777642 12 399999
Q ss_pred CchhhHHHHHhhhccCCCc--EEEe-cCCCcchhhHH----HHhhccc------eEEcCchhhhcchhhhhhhhhhhhhc
Q psy16512 132 GATSAIKTVSEYFEFNEGS--FIYL-TDNHTSVLGMR----ELVKTNQ------IYSFSVDDARNMLNEFKESQENVENM 198 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd--vv~~-~~~h~s~~~~~----~~~~~~g------~v~~~~~~~~~~~~~~~~l~~~~~~~ 198 (815)
++|+|++.++.....-.|. ++.. ...+.+...+. ....... ...+..+ +++.+++++. ..
T Consensus 112 sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~l~----~~ 184 (431)
T PRK06209 112 NGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFRYN---DIASLEALFE----DH 184 (431)
T ss_pred CHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccCCC---CHHHHHHHHH----hC
Confidence 9999999888755422344 4443 11111101010 0000000 1111111 3344444332 11
Q ss_pred CCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC--CC---CCCCcEEEEccc
Q psy16512 199 RHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LK---QHQPDFISISFY 273 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~---~~~~D~vv~S~~ 273 (815)
..+..+|++.......+..-.+++|.++|+ ++|+++|+|+++ .|..... .. ...+|+ .++.
T Consensus 185 ~~~~aavi~Epv~g~~~~~~~l~~l~~lc~-----------~~g~lLI~DEv~-tG~~~~~~g~~~~~gv~PDi--~t~g 250 (431)
T PRK06209 185 PGRIACVILEPATADEPQDGFLHEVRRLCH-----------ENGALFILDEMI-TGFRWHMRGAQKLYGIVPDL--SCFG 250 (431)
T ss_pred CCCEEEEEEccccCCCCCHHHHHHHHHHHH-----------HcCCEEEEEccc-ccCCcCcchhhHHhCCCcce--eeeh
Confidence 234667777765433222223778888888 999999999987 4432110 11 225787 5568
Q ss_pred cccccCCcceEEEEecccccc--cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh
Q psy16512 274 KMFGYPTGLGALIVKQKSAHV--LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS 351 (815)
Q Consensus 274 K~~g~p~G~G~l~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~ 351 (815)
|.+|+-.-+|+++.++++.+. +......... ..-...++|..+++++.++++.+.+.+ .
T Consensus 251 K~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~------------------~~~~T~~~np~~~aaa~a~l~~i~~~~-~ 311 (431)
T PRK06209 251 KALGNGFAVSALAGKREYMELGGLEHTDRERVF------------------LLSTTHGAETHALAAAIATMAIYRDED-V 311 (431)
T ss_pred hhhcCCcccEEEEEHHHHHhhhcccccCCCCce------------------eeccCCCCCHHHHHHHHHHHHHHhccC-H
Confidence 988741126888888776643 1100000000 000112356677888888888887642 2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy16512 352 FTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 352 ~~~~~~l~~~l~~~L~~l 369 (815)
.++..++.+++.+.|+++
T Consensus 312 ~~~~~~~g~~l~~~L~~~ 329 (431)
T PRK06209 312 IERLHEQGAKLAAGVNEA 329 (431)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 377777777888777654
|
|
| >TIGR02933 nifM_nitrog nitrogen fixation protein NifM | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-08 Score=103.56 Aligned_cols=53 Identities=28% Similarity=0.611 Sum_probs=48.4
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccch
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKD 61 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~~ 61 (815)
-.||||||+.+++|+|+|.+++|.|++|++|+ ||+|++||||+++.++.+...
T Consensus 173 ~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS~------Pi~s~~G~hIlkl~~~~~~~~ 225 (256)
T TIGR02933 173 MEGGLLGWVSRGLLYPQLDAALFQLAEGELSP------PIESEIGWHLLLCEAIRPARP 225 (256)
T ss_pred ccCCccCCcCCCccChHHHHHHHcCCCCCcCC------ceeeCCeEEEEEEeeecCCCC
Confidence 36999999999999999999999999999998 889999999999998766533
|
Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.4e-05 Score=92.48 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=129.0
Q ss_pred CCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEE
Q psy16512 200 HSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFIS 269 (815)
Q Consensus 200 ~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv 269 (815)
.+..+|++.-+ ....|.+.| ++.+.++|+ ++|+++|.|+++. +|-. ..+.-...||+++
T Consensus 583 ~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~-----------~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~ 651 (817)
T PLN02974 583 GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCR-----------SRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIAC 651 (817)
T ss_pred CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHH-----------HhCCEEEEeecccCCCcccchhhHHhcCCCCCEEe
Confidence 35677888774 666788876 455777787 9999999998865 2221 1111223589877
Q ss_pred EccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 270 ISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 270 ~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
++ |.+++- .-+|++++++++.+.+...... +. + ..-...+-|..+.+++.++++.+.+.
T Consensus 652 ~g--KgLtgG~~Plaa~l~~~~I~~~f~~~~~~-~~---------~--------~hg~Ty~gnpl~cAaala~L~~~~~~ 711 (817)
T PLN02974 652 YA--KLLTGGLVPLAATLATEEVFEAFRGPSKL-DA---------L--------LHGHSYTAHPMGCAAAAKALQWYKDP 711 (817)
T ss_pred ec--ccccCCCCccEEEEEcHHHHHhhcccccc-CC---------c--------ccCCCCCcCHHHHHHHHHHHHHHHcc
Confidence 64 866622 1278999998887654210000 00 0 00011245667777777888887764
Q ss_pred hh--hH-HHHHHHHHHHHHHH-HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-ccC---HHHHHHhhh-c
Q psy16512 349 RK--SF-TNAFELSQYTYFYF-KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-YYG---YSEVQNLAN-L 419 (815)
Q Consensus 349 ~~--~~-~~~~~l~~~l~~~L-~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~~~---~~~v~~~l~-~ 419 (815)
+. .. ++...+.+++.+.| +.+.. .|.+.-+ ...|.++.+.+...... .+. ...+.+.+. +
T Consensus 712 ~~~~~l~~~~~~l~~~l~~~l~~~l~~---~p~V~~V--------Rg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~ 780 (817)
T PLN02974 712 STNPNLIPPGSRLRELWDEELVRAISS---LPNVERV--------VSLGTVLALELDAEGSGSGYSSLYARSVVRRLRRE 780 (817)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCeeEE--------EeeeeEEEEEEecCCcccccchHHHHHHHHHHHHh
Confidence 21 11 55555556565555 22210 1333222 23478888888643221 111 123556666 8
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+||.+++. .+.||+...+..+++++++++++|.+.+
T Consensus 781 ~Gl~~r~~----------------------------------------Gnvi~l~pP~~i~~e~l~~~~~~l~~~~ 816 (817)
T PLN02974 781 DGIYARPL----------------------------------------GNVVYLMCGPTTSPETCTRLLRKVYRRL 816 (817)
T ss_pred CCEEEEec----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99998741 2679999999999999999999998754
|
|
| >PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-08 Score=89.32 Aligned_cols=45 Identities=40% Similarity=0.666 Sum_probs=42.8
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
.||+|||+..++++|+|.+++|.|++|++|. ||+|++||||+++.
T Consensus 70 ~gG~lG~~~~~~L~~~~~~a~~~L~~Geis~------Pi~t~~G~hIlk~~ 114 (115)
T PTZ00356 70 KGGDLGFFGRGQMQKPFEDAAFALKVGEISD------IVHTDSGVHIILRL 114 (115)
T ss_pred cCccceeEcccccCHHHHHHHHcCCCCCCCC------cEEECCEEEEEEEc
Confidence 6999999999999999999999999999998 88999999999873
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-06 Score=98.42 Aligned_cols=295 Identities=10% Similarity=0.022 Sum_probs=177.8
Q ss_pred hhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCC--C-cEEEecCCCcchhh-HHHHhhccc-eEEcCc
Q psy16512 104 VSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNE--G-SFIYLTDNHTSVLG-MRELVKTNQ-IYSFSV 178 (815)
Q Consensus 104 ~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~--g-dvv~~~~~h~s~~~-~~~~~~~~g-~v~~~~ 178 (815)
-+.+-+.+..++++.|.+-.+ --+-.++|++-+.++.+..... . .++++...||.... ....++..| .+.+
T Consensus 123 Lqal~e~Qtmi~~LtGm~vaN--ASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-- 198 (954)
T PRK12566 123 LEALLNFQQMTIDLTGLDLAN--ASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-- 198 (954)
T ss_pred HHHHHHHHHHHHHHhCchhhh--hhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE--
Confidence 334668899999999987654 4455677766665555553222 2 38899999998765 444455555 2222
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc--cCCC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY--CGSN 256 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~--~g~~ 256 (815)
+++.. ..+..+..|++.+|+ ..|.+.|+++|.+++| +.|++++ +++.- .+..
T Consensus 199 ------~~~~~-------~~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h-----------~~gal~~-~~~d~laL~ll 252 (954)
T PRK12566 199 ------DAVDN-------LAAHAVFGALLQYPD-THGEIRDLRPLIDQLH-----------GQQALAC-VAADLLSLLVL 252 (954)
T ss_pred ------cchhh-------cCCCCEEEEEEECCC-CceEEccHHHHHHHHH-----------HcCCEEE-EEeCHHHHhCC
Confidence 11111 112357788888775 6799999999999999 7787744 44432 2222
Q ss_pred CCCCCCCCCcEEEEcccc-----ccccCCcceEEEEecccccccCcccccCceEEEEecCCcccc---cccCccccccCC
Q psy16512 257 MLDLKQHQPDFISISFYK-----MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI---KKDGLFEKFEDG 328 (815)
Q Consensus 257 ~~dl~~~~~D~vv~S~~K-----~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~g 328 (815)
-...++++|+++.+.+- .|||| +.|++.+++++.+++.-.+.|-. .+. .....+.. .++.. -|.+-.
T Consensus 253 -~~Pge~GADI~vG~~Q~fGvp~~~GGP-~ag~~a~~~~~~R~~PGRivG~s-~D~-~G~~a~~l~LqtREQH-IRReKA 327 (954)
T PRK12566 253 -TPPGELGADVVLGSTQRFGVPMGYGGP-HAAYFACRDDYKRAMPGRIIGVS-RDA-RGNTALRMALQTREQH-IRREKA 327 (954)
T ss_pred -CChhhcCCcEEeeCCCcCCCCCCCCCC-CeeeeeehHHHHhhCCCCcccee-ecC-CCCeeeehhhhHHHHH-hhhccc
Confidence 12357799999886653 55545 48999999887766644443321 110 00111111 11111 234556
Q ss_pred CCChhHHHHHHHHHH--HHHhhhh----hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 329 TVNYLAIISLKYGFD--TMEKKRK----SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 329 t~~~~~~~al~~al~--~l~~~~~----~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
|.|+....+|.+-.. ++...|. .+ +++..++.++.+.|.+. |+++....- -..+.+++
T Consensus 328 tSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~-------g~~~~~~~f-------F~~~~v~~- 392 (954)
T PRK12566 328 NSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAK-------GIKRLNRHF-------FDTLTLEV- 392 (954)
T ss_pred cchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-------CCccccCCc-------cceEEEEc-
Confidence 777766555544322 2223332 22 66888889999999885 777654311 12233333
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
+.. ..++.+.+.+.||.+|.- ..+.+.||+.--+|.
T Consensus 393 ~~~-----~~~~~~~a~~~~~n~r~~---------------------------------------~~~~~~~s~de~~~~ 428 (954)
T PRK12566 393 GGA-----QAAIIESAEAARINLRIL---------------------------------------GRGRLGVSLDETCDE 428 (954)
T ss_pred cCC-----HHHHHHHHHHCCCeeEEe---------------------------------------CCCeEEEEeCCCCCH
Confidence 111 234777778889988731 025688999988999
Q ss_pred HHHHHHHHHHH
Q psy16512 482 DDVKYFLSFLN 492 (815)
Q Consensus 482 edi~~lv~~L~ 492 (815)
+|++.+++++.
T Consensus 429 ~~~~~~~~~f~ 439 (954)
T PRK12566 429 ATVARLFDIFL 439 (954)
T ss_pred HHHHHHHHHhc
Confidence 99999999884
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=87.50 Aligned_cols=312 Identities=12% Similarity=0.068 Sum_probs=178.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchh----hHHHHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATS----AIKTVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~----al~~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
+.++++.+.+.-|.+. +.|.+|+-+ |=..+++++....|+ .+++...|.+.-.-..+++.+. .+.+
T Consensus 584 f~~Le~~Lc~iTG~D~----~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~ 659 (1001)
T KOG2040|consen 584 FTELEKDLCEITGFDS----FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGC 659 (1001)
T ss_pred HHHHHHHhheeecccc----eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeec
Confidence 7778888888888654 777766443 233456666545553 5666777766544444544433 4455
Q ss_pred CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+.++.++...+.... ++..++-.++.++.|++. |.. -.+++++++.+ +||--|.+|+|..-..
T Consensus 660 ~~~G~id~~dLk~ka----ekh~~~Laa~MvTYPST~-GvfE~~i~d~cd~iH-----------ehGGQVYlDGANMNAq 723 (1001)
T KOG2040|consen 660 DANGNIDMVDLKAKA----EKHKDNLAALMVTYPSTH-GVFEEGIDDICDIIH-----------EHGGQVYLDGANMNAQ 723 (1001)
T ss_pred cCCCCccHHHHHHHH----HHhhhhhheeEEeccccc-ccccccHHHHHHHHH-----------hcCCEEEecCCCccce
Confidence 667777777766422 233455778888888876 555 46999999999 8999999998843221
Q ss_pred C-CCCCCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC-
Q psy16512 256 N-MLDLKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG- 328 (815)
Q Consensus 256 ~-~~dl~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g- 328 (815)
. -....+++.|+.-..+||+|+.|.| +|=+.+++.++..+. +..-+.. . .....-..|
T Consensus 724 VGlc~pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP----~HpVvs~---~--------~~~~~~~~gs 788 (1001)
T KOG2040|consen 724 VGLCRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP----SHPVVSP---G--------RPEDTSPVGS 788 (1001)
T ss_pred ecccCCccccccceeecccceeeecCCCCCCCCCccchhhhccccCC----CCCccCC---C--------CCCCCCCccc
Confidence 1 1123456889999999999998875 555667766654332 1111000 0 000000011
Q ss_pred --CCChhHHHHHHHHHHHHHhhhh---hH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 329 --TVNYLAIISLKYGFDTMEKKRK---SF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 329 --t~~~~~~~al~~al~~l~~~~~---~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
..++-+...+..+..++.-+|. .. +-..-.++|+..+|++. .-.++.... ...++-+-+.+.
T Consensus 789 VsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h-------Ykil~~~~~----~~vaHEFIlD~r 857 (1001)
T KOG2040|consen 789 VSAAPWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH-------YKILFRGEN----GLVAHEFILDLR 857 (1001)
T ss_pred eeccCCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc-------cceeEecCC----cceeeeeeeech
Confidence 1222222233344455554432 11 44455678888899875 122232211 011122222222
Q ss_pred cCCC-CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDG-TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~-~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.... ..+...++.+.|..+|...-+-+... .|.+-|-..--.+
T Consensus 858 ~fK~~agieavDvAKRL~DYgFHaPTmswPV------------------------------------~gtLMIEPTESE~ 901 (1001)
T KOG2040|consen 858 PFKKTAGIEAVDVAKRLMDYGFHAPTMSWPV------------------------------------AGTLMIEPTESED 901 (1001)
T ss_pred hhccccCCcHHHHHHHHHhccCCCCcccccc------------------------------------CCceEeccCcccc
Confidence 2222 22556689999999997754433221 2556565555567
Q ss_pred HHHHHHHHHHHHHHHhhcCcc
Q psy16512 481 WDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~~~~~ 501 (815)
.+++|+|+++|-.+ ++.+..
T Consensus 902 k~ElDRfcdAliSI-reEI~~ 921 (1001)
T KOG2040|consen 902 KAELDRFCDALISI-REEIAQ 921 (1001)
T ss_pred HHHHHHHHHHHHHH-HHHHHH
Confidence 89999999999774 444443
|
|
| >PRK12450 foldase protein PrsA; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-07 Score=101.08 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCccccccC-CCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 4 LSGDLGWVVR-GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 4 ~gg~lgw~~~-~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
.||+|||... ++|+|+|++|+|.|++|++|+|+.+..||+|+||||||++.+.+.
T Consensus 189 ~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~~~~ 244 (309)
T PRK12450 189 KKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTKKAT 244 (309)
T ss_pred cCCcccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEecccc
Confidence 6899998764 689999999999999999999887778999999999999988753
|
|
| >PRK01326 prsA foldase protein PrsA; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-07 Score=99.67 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCccccccC-CCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVR-GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~-~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-+||||||+.. ++++++|++|+|.|++|++|+|+-+..|..++||||||++.+.+.
T Consensus 185 ~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~t~~~~~~~~GyhIikv~~~~~ 241 (310)
T PRK01326 185 EKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVISVLDPTAYQSKYYIVKVTKKTE 241 (310)
T ss_pred ccCCcccccCCCCcccHHHHHHHHcCCCCCcCCceecCCCCcCCceEEEEEEeccCC
Confidence 36999999987 468889999999999999999553344444499999999988764
|
|
| >PRK04405 prsA peptidylprolyl isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.3e-07 Score=98.81 Aligned_cols=48 Identities=29% Similarity=0.471 Sum_probs=43.1
Q ss_pred CCCccccccC--CCCchHHHHHHhcCCCCccc-CCCcCCCCcccCCCcceeeecccc
Q psy16512 4 LSGDLGWVVR--GSMVGEFQDAAFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKN 57 (815)
Q Consensus 4 ~gg~lgw~~~--~~~~~~f~~a~~~l~~g~is-~~~~~~~pv~t~fGyhIi~ved~~ 57 (815)
.||||||+.. ++|+|+|++|+|.|++|+++ . ||+|+||||||++.+.+
T Consensus 187 ~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~------pv~t~~GyhIikv~~~~ 237 (298)
T PRK04405 187 KGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTT------PVKTTYGYEVIKMIKHP 237 (298)
T ss_pred cCCcCcccccCCCCCCHHHHHHHHcCCCCCccCC------CEEeCCeEEEEEEeecC
Confidence 6999998864 78999999999999999995 6 89999999999998753
|
|
| >PRK02998 prsA peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-07 Score=97.39 Aligned_cols=48 Identities=42% Similarity=0.745 Sum_probs=45.5
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~ 57 (815)
+||+|||+.+++++|+|++++|.|++|++|+ ||+|++|||||++.+.+
T Consensus 177 ~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~------pi~t~~G~hIikv~~~~ 224 (283)
T PRK02998 177 QGGEISGFAPGQTVKEFEEAAYKLDAGQVSE------PVKTTYGYHIIKVTDKK 224 (283)
T ss_pred cCCcCCCcCCCcchHHHHHHHHcCCCCCcCC------ceEECCEEEEEEEeccC
Confidence 6999999999999999999999999999998 88999999999998864
|
|
| >PRK03002 prsA peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.1e-07 Score=93.89 Aligned_cols=48 Identities=44% Similarity=0.804 Sum_probs=45.4
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~ 57 (815)
.||+|||+..++++|+|++++|.|++|++|+ ||+|++||||+++.+++
T Consensus 179 ~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~------pI~t~~G~hIikv~~~~ 226 (285)
T PRK03002 179 KGGDLGYFNSGRMAPEFETAAYKLKVGQISN------PVKSPNGYHIIKLTDKK 226 (285)
T ss_pred cCCccceeccccCCHHHHHHHHcCCCCCcCC------cEEECCEEEEEEEeecC
Confidence 6999999999999999999999999999998 88999999999998764
|
|
| >PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-07 Score=103.41 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=47.5
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
.+||||||+.+++|+|+|++++|.|++|++|+ |++|++|||||++.+++..
T Consensus 208 ~~gGdlg~~~~~~l~~~~~~~~~~l~~G~is~------Pi~t~~GyhIikl~~~~~~ 258 (413)
T PRK10770 208 LKGGQMGWGRIQELPGLFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLRGE 258 (413)
T ss_pred ccCCcCCccccccccHHHHHHHHhCCCCCCCC------cEECCCceEEEEEeeeccc
Confidence 46999999999999999999999999999998 8899999999999988643
|
|
| >PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-07 Score=102.15 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=45.9
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
+||+|||+.++.|+|+|+++++.|++|++|. ||+|+||||||++.+.+.
T Consensus 319 ~gG~lg~~~~~~~~~~~~~~~~~l~~GeiS~------pv~t~~g~~ii~v~~~~~ 367 (413)
T PRK10770 319 QGGDLGWATPDIFDPAFRDALMRLNKGQISA------PVHSSFGWHLIELLDTRQ 367 (413)
T ss_pred hCCcCCccCccccCHHHHHHHHcCCCCCcCC------cEEcCCeEEEEEEeeccc
Confidence 6899999999999999999999999999998 889999999999987644
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.6e-05 Score=83.76 Aligned_cols=313 Identities=12% Similarity=0.035 Sum_probs=154.9
Q ss_pred HHHHHHHHhHcCCCCCceeEEecCCchh-hHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chh-
Q psy16512 108 DQMRTKILQYFNTDSDHYSVIFTSGATS-AIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDD- 180 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~~~~iv~t~g~t~-al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~- 180 (815)
..+-..+.+.+|+..-. ..+.++-+|. ++.+.+.++.. ..++ ||++...|.|-+..+..++... .++.. .+.
T Consensus 59 n~l~~d~~~~~G~~~~~-~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~d~l 137 (389)
T PF05889_consen 59 NSLVLDALRLAGLRSVK-SCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEGDEL 137 (389)
T ss_dssp HHHHHHHHHHTTHTTHC-EEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEETTEE
T ss_pred HHHHHHHHHHcCCcccc-ceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCCCee
Confidence 34444555667875322 3566777764 35555555531 2345 9999999988777776665443 33321 122
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC-hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP-LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML- 258 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~-l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~- 258 (815)
..+.+.+++++ +...+...+.++++.+-..|...| +++|+++|+ ++|++.++-+|+++-....
T Consensus 138 ~td~~~ie~~i----~~~G~~~iLcvltttscfapr~~D~i~~IakiC~-----------~~~IPhlvNnAYgvQ~~~~~ 202 (389)
T PF05889_consen 138 ITDLEAIEAKI----EELGADNILCVLTTTSCFAPRLPDDIEEIAKICK-----------EYDIPHLVNNAYGVQSSKCM 202 (389)
T ss_dssp EEHHHHHHHHH----HHHCGGGEEEEEEESSTTTTB----HHHHHHHHH-----------HHT--EEEEGTTTTT-HHHH
T ss_pred eccHHHHHHHH----HHhCCCCeEEEEEecCccCCCCCccHHHHHHHHH-----------HcCCceEEccchhhhHHHHH
Confidence 22333444433 234456789999999999999998 999999999 9999999999998710000
Q ss_pred -----CCCCCCCcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 259 -----DLKQHQPDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 259 -----dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
-...-..|+++-|.-|-|..|.|-+.+.... ..+..+...|.|-.. .++
T Consensus 203 ~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGRas-----------------------~sp-- 257 (389)
T PF05889_consen 203 HLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGRAS-----------------------ASP-- 257 (389)
T ss_dssp HHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSHBT-----------------------SHH--
T ss_pred HHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhhhh-----------------------ccc--
Confidence 0000124677777778777677655554433 344434333322111 011
Q ss_pred hHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-cC
Q psy16512 333 LAIISLKYGFDTMEKKR--KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-YG 409 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~--~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-~~ 409 (815)
.+- +...+..+-.-+ .-+....++-.++.++|++.... -+-++...+ ...-.+.|.+....... -+
T Consensus 258 -~ld-~~itLl~LG~~g~~~ll~~r~~~f~~l~erl~~~aee---~~e~ll~~p------~N~is~a~tl~~l~~~~~k~ 326 (389)
T PF05889_consen 258 -SLD-LFITLLSLGCTGYGALLKERKASFPYLKERLKKWAEE---VGERLLETP------RNHISMAFTLDTLYEISQKD 326 (389)
T ss_dssp -HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTEEBSSST------T-SSEEEEE-TTCCTCCSSH
T ss_pred -chH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhcCCC------CCCeeEEEECccchhhccch
Confidence 111 111111111111 11133334444444444333100 033333221 12334555555322211 11
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
...+..+|..+||.-.-+-.+......++ .+.++..|+-+...+-.++||||.+++
T Consensus 327 ~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh------------------------~~~yp~~Ylt~AsaiG~~~eevd~~v~ 382 (389)
T PF05889_consen 327 GTFLGSMLFKRGVSGIRVVTPGGKKQTSH------------------------SSNYPCPYLTAASAIGMTREEVDYFVK 382 (389)
T ss_dssp HHHHHHHHHHTTEESSEEEETSSCEEETT------------------------SS--SSSEEEEEE-TT--HHHHHHHHH
T ss_pred hhhHHHHHHhCCcccceeeccCCCccccc------------------------CCCCchHHHHHHHHhCCCHHHHHHHHH
Confidence 23578888888876322111110000000 124556899997677789999999999
Q ss_pred HHHHHHh
Q psy16512 490 FLNQYFL 496 (815)
Q Consensus 490 ~L~~~~~ 496 (815)
.|+++++
T Consensus 383 rL~k~i~ 389 (389)
T PF05889_consen 383 RLDKIIK 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999863
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PRK03095 prsA peptidylprolyl isomerase; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.8e-07 Score=95.48 Aligned_cols=49 Identities=49% Similarity=0.841 Sum_probs=46.3
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
.||+|||+.+++++|+|++++|.|++|++|. ||+|++||||+++.++.+
T Consensus 175 ~gG~lg~~~~~~L~~~~~~al~~L~~GevS~------pi~t~~G~hIikv~~~~~ 223 (287)
T PRK03095 175 KGGDLGFFGAGKMVKEFEDAAYKLKKDEVSE------PVKSQFGYHIIKVTDIKE 223 (287)
T ss_pred cCCcCceeccccccHHHHHHHHhCCCCCcCC------ceEECCEEEEEEEeeecC
Confidence 6999999999999999999999999999998 889999999999988754
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00057 Score=71.28 Aligned_cols=344 Identities=14% Similarity=0.133 Sum_probs=187.3
Q ss_pred hhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al 144 (815)
|...+++.++..+..++..- +..|+..-+ +..+.+.+.+.||.+. ++-|.-+-.|=+++...+
T Consensus 52 LTDSGTgams~~qwaamm~G--DEAYagsrs-----------~~~L~~avkdifGfq~----~iPthQGRgAE~Il~~i~ 114 (471)
T COG3033 52 LTDSGTGAMTDKQWAAMMRG--DEAYAGSRS-----------YYALADAVKDIFGFQY----TIPTHQGRGAENILIPIL 114 (471)
T ss_pred eccCCcccccHHHHHHHhcc--chhhccccc-----------HHHHHHHHHHhcCcee----eeeccCCccHHHHHHHHH
Confidence 44556777777777766431 223322211 6678888889999643 677877777766666555
Q ss_pred cc----CCCc-EEEecCCCcchhhHHHHhhccc----eEEcC----------chhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 145 EF----NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFS----------VDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 145 ~~----~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~----------~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
.. .||. .+..+..|...... ..+..| -++++ ..+.+|++.+++.|.+. ...+.-.|
T Consensus 115 ik~~~~~pg~~~~~~sN~~FdTTr~--h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidev---G~~nvp~I 189 (471)
T COG3033 115 IKKGEQEPGSKMVAFSNYHFDTTRG--HIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEV---GADNVPYI 189 (471)
T ss_pred hhhccccCCccccccccceecchhH--HHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHh---CcccCcEE
Confidence 41 3554 44444445433321 222233 12222 23457777877766422 12333344
Q ss_pred E-EecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccC------CCCCCCCCC-----------C
Q psy16512 206 V-YPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG------SNMLDLKQH-----------Q 264 (815)
Q Consensus 206 ~-i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g------~~~~dl~~~-----------~ 264 (815)
+ ....|+.-|+..+++ ++.++|+ +++++++.|++-.+- ........+ .
T Consensus 190 ~~tiT~NsagGQpVSm~n~r~v~~ia~-----------ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sY 258 (471)
T COG3033 190 VLTITNNSAGGQPVSMANMKAVYEIAK-----------KYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSY 258 (471)
T ss_pred EEEEeccccCCCcchHHhHHHHHHHHH-----------HcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhh
Confidence 4 444555667766654 5667777 999999999774332 111222221 3
Q ss_pred CcEEEEccccccccCCcceEEEEeccc----ccccCcccccCceEEEEecCCcccccccCccccc-cCCCCChhHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKS----AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF-EDGTVNYLAIISLK 339 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~----~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~gt~~~~~~~al~ 339 (815)
+|-++.|.-|=...+-| |+|..+++. .+.++.... + .+.+ ..|...--.+.++.
T Consensus 259 aD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V----~----------------~eG~~tYGgl~GrdmealA 317 (471)
T COG3033 259 ADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVV----V----------------QEGFPTYGGLAGRDMEALA 317 (471)
T ss_pred hhhheeeccccceeccc-cEEEecCccHHHHHHHHHhheE----e----------------eccccccCcccchhHHHHH
Confidence 68889999993332444 788888773 222211110 0 0011 12334444556666
Q ss_pred HHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE----EecCCCCccCHHHHH
Q psy16512 340 YGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN----LLHKDGTYYGYSEVQ 414 (815)
Q Consensus 340 ~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~----~~~~~~~~~~~~~v~ 414 (815)
.+|..-.. ... ++..+..++|.+.|.+. |+.++.|.+ |+-+.+. ++....+.+..+.+.
T Consensus 318 vGL~e~~~--~~yl~~Rv~Qv~YL~~~l~~~-------GVpi~~paG-------GHavfvda~~~lphip~eqFpaqala 381 (471)
T COG3033 318 VGLREGVN--FDYLAHRVAQVQYLADGLEEA-------GVPIVQPAG-------GHAVFVDAGKFLPHIPAEQFPAQALA 381 (471)
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHHHHHHhc-------CCeeEecCC-------CceEEeehhhhcCCCChhhCcHHHHH
Confidence 66543222 233 66677788999999987 777776654 4444443 233444444444444
Q ss_pred Hhh-hcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHH
Q psy16512 415 NLA-NLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFL 491 (815)
Q Consensus 415 ~~l-~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L 491 (815)
..| .+.||-..- |.+ .+|-++. .| ... .-+-..+|+.+.--+ |.+.+|.+++++
T Consensus 382 ~ely~e~GiRavElG~~--------~~~rd~k-------tg----~q~----~~~~elvRltipRrtYt~~HmD~V~~a~ 438 (471)
T COG3033 382 CELYKEAGIRAVELGSF--------SLGRDPK-------TG----KQH----PPPAELVRLTIPRRTYTQTHMDFVIEAF 438 (471)
T ss_pred HHHHHHhCeeeeeeece--------ecccCCC-------cc----ccC----CCchheeeEeccccccchhHHHHHHHHH
Confidence 444 677876532 221 1111110 00 000 001257999987432 678999999999
Q ss_pred HHHHhhcCcc
Q psy16512 492 NQYFLQQADF 501 (815)
Q Consensus 492 ~~~~~~~~~~ 501 (815)
++++.+..+.
T Consensus 439 ~~l~e~~~~i 448 (471)
T COG3033 439 KALKENAEDI 448 (471)
T ss_pred HHHHhccccC
Confidence 9998888654
|
|
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0013 Score=66.93 Aligned_cols=372 Identities=15% Similarity=0.131 Sum_probs=196.1
Q ss_pred cCCCCcccCCCcCCCCcccCCCcceeeeccccccchhhhhhhhc----ccccchhhHHHHHHHHhhccccCCCChhhhhh
Q psy16512 26 KLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKDICYLDYTG----AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSD 101 (815)
Q Consensus 26 ~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~~~iyLd~a~----~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~ 101 (815)
+..+|+--+..|.++|++.--+ +.+..-+.++.-|||... .+--.++++++...++.... .....-..+
T Consensus 15 k~hIG~~Cq~Fy~sDP~kivRa----q~QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~---tN~RFlhd~ 87 (452)
T KOG1403|consen 15 KQHIGQACQLFYRSDPLKIVRA----QGQYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATIS---TNNRFLHDE 87 (452)
T ss_pred HhccCcceeEEecCCchhhehh----ccceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhc---ccchhhHHH
Confidence 3446777777788888753211 011112334456766543 34456788888877765421 121122233
Q ss_pred hhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHH-----hhccc-
Q psy16512 102 FCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMREL-----VKTNQ- 172 (815)
Q Consensus 102 ~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~-----~~~~g- 172 (815)
+ ++-+++..+.+=+.+. ++|++++++|+.++++.... ...|+|+.+..|.. +....+. -+..+
T Consensus 88 l----v~cA~~l~stlPeLsv----c~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPYKF~~g~~v 159 (452)
T KOG1403|consen 88 L----VQCARTLTSTLPELSV----CFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGV 159 (452)
T ss_pred H----HHHHHHHhhcCCCceE----EEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccceeccCCCCc
Confidence 3 5666666666655433 79999999999998876542 34456666654332 1111111 11111
Q ss_pred ----eEEcCc--h----------------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH----HHHH
Q psy16512 173 ----IYSFSV--D----------------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW----CNTV 226 (815)
Q Consensus 173 ----~v~~~~--~----------------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~----I~~l 226 (815)
++.+.+ + +..-.+.++++++... .......+++..+..+--|.++|... +++.
T Consensus 160 ~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~-~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~ 238 (452)
T KOG1403|consen 160 AKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQL-AKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADA 238 (452)
T ss_pred CCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHH-hcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHH
Confidence 333221 0 0011112222222111 11223556666778888899998654 5666
Q ss_pred hhccccccccccCCCCeEEEEeccccc-CCCC-----CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 227 HRNHVFKKHFKCSRSNCFVLLDAATYC-GSNM-----LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
.+ .+|-..|.|+.+.. |..- +.+-..-+|+++. -|-.|...-++++...+++++.+...
T Consensus 239 Vr-----------~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtm--gKpmGNGhPVa~VattkeIA~Af~at-- 303 (452)
T KOG1403|consen 239 VR-----------SAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTM--GKPMGNGHPVAAVATTKEIAQAFHAT-- 303 (452)
T ss_pred Hh-----------cCCCeEEeehhhhcccccchhhhhhhhhccccchhee--cccCCCCCeeeEEeccHHHHHHhccc--
Confidence 66 78889999987642 2110 1111123677654 46444222278888888887655221
Q ss_pred cCceEEEEecCCcccccccCcccccc-CCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFE-DGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~-~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
.+. .|. .|..+ .+.+...+.++.++.. .. +|....-++|...|++++ .-.
T Consensus 304 ---gv~-----------------YFNTyGGnP-VsCAv~laVm~v~e~E--~Lq~ha~~vG~~L~~lL~~~k-----~kh 355 (452)
T KOG1403|consen 304 ---GVE-----------------YFNTYGGNP-VSCAVGLAVMRVCEDE--NLQEHAQQVGEKLEVLLRRLK-----QKH 355 (452)
T ss_pred ---cce-----------------ehhccCCCc-hhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHh-----hhc
Confidence 111 121 22223 3333333445544432 22 666777777777776552 123
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCcc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++- ..-|-++-+.+........ ....+.++-..++|.+++
T Consensus 356 ~~IGDv-----RGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsa--------------------------- 403 (452)
T KOG1403|consen 356 ECIGDV-----RGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSA--------------------------- 403 (452)
T ss_pred cceecc-----ccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEec---------------------------
Confidence 445432 2235556666543211111 111233333566787764
Q ss_pred CccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
||-..+.+.|-...+-++++++.++..|++++-..
T Consensus 404 ----------DGPh~NilKiKPPmCFneena~e~v~~ld~iLT~m 438 (452)
T KOG1403|consen 404 ----------DGPHRNILKIKPPMCFNEENADEFVLGLDEILTVM 438 (452)
T ss_pred ----------CCCCCceeecCCCcccChhhHHHHHHHHHHHHHHH
Confidence 23345788888888889999999999999887543
|
|
| >PRK10788 periplasmic folding chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=7e-06 Score=97.45 Aligned_cols=52 Identities=23% Similarity=0.427 Sum_probs=46.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccch
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKD 61 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~~ 61 (815)
-+||||||+.++.|+++|++++| ++.|++|+ ||+|++|||||++.+..+...
T Consensus 312 ~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs~------pv~t~~G~~Iikv~~~~~~~~ 363 (623)
T PRK10788 312 RNGGDLGWLEPATTPDELKNAGL-KEKGQLSG------VIKSSVGFLIVRLDDIQPAKV 363 (623)
T ss_pred hcCCcccccCCCCCChHHHHHhc-cCCCCcCC------cEEECCeEEEEEEEeeccCCC
Confidence 47999999999999999999988 57899998 889999999999998766443
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.5e-05 Score=75.73 Aligned_cols=183 Identities=14% Similarity=0.036 Sum_probs=114.6
Q ss_pred CCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHHHHhh
Q psy16512 92 HPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMRELVK 169 (815)
Q Consensus 92 np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~~~~~ 169 (815)
.+++.+...+.. .+.+..-.|+.||++..--..-| -++|+|+..++.++. +||| +++.. ..|-+....+.+-.
T Consensus 55 ~~stGYGydD~G---RdtLe~vyA~vf~aE~a~VRpq~-isGTHAI~~aLfg~L-RpgDell~i~G~PYDTLeevIG~rg 129 (416)
T COG4100 55 TGSTGYGYDDLG---RDTLERVYAQVFGAEAALVRPQI-ISGTHAIACALFGIL-RPGDELLYITGSPYDTLEEVIGLRG 129 (416)
T ss_pred CCCCCCCccccc---hhHHHHHHHHHhccccceeeeee-ecchhHHHHHHHhcc-CCCCeEEEecCCcchhHHHHhccCC
Confidence 344444444441 45566778999998775312233 466789999999998 9999 55443 23333333333221
Q ss_pred -------ccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc----CCCccccChHHHHHHhhcccccc
Q psy16512 170 -------TNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES----NFSGTKYPLSWCNTVHRNHVFKK 234 (815)
Q Consensus 170 -------~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~----n~tG~~~~l~~I~~l~~~~~~~~ 234 (815)
..| .+++..++.+|...+..+ +.++||+|.+.--. -|+=.+.+++++.++.+++
T Consensus 130 ~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~-------i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~i---- 198 (416)
T COG4100 130 EGQGSLKDFGIKYKAVPLTADGKIDIQAVKTA-------ISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEI---- 198 (416)
T ss_pred CCcccHHHhCcceeecccccCCcccHHHHHHh-------cCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhc----
Confidence 111 456667788888877664 45889999986322 1111222344444555533
Q ss_pred ccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccC--CcceEEEEeccccccc
Q psy16512 235 HFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP--TGLGALIVKQKSAHVL 295 (815)
Q Consensus 235 ~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p--~G~G~l~~~~~~~~~l 295 (815)
..+++++||.+++--.........++|++..|+-|.-|+- .--||+..+.+.++..
T Consensus 199 -----npn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~ 256 (416)
T COG4100 199 -----NPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA 256 (416)
T ss_pred -----CCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence 5789999999986555445555668999999999966621 1148888888887643
|
|
| >PRK00059 prsA peptidylprolyl isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.2e-05 Score=87.99 Aligned_cols=50 Identities=40% Similarity=0.549 Sum_probs=46.3
Q ss_pred CCCccccccC--CCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 4 LSGDLGWVVR--GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 4 ~gg~lgw~~~--~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
+||+|||+.. +.++|+|.+++|.|+.|++|+ ||+|++||||+++.++.+.
T Consensus 239 ~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~------pi~~~~G~~i~~v~~~~~~ 290 (336)
T PRK00059 239 KGGDLGDVPYSDSGYDKEFMDGAKALKEGEISA------PVKTQFGYHIIKAIKKKEY 290 (336)
T ss_pred cCCcccccccccCccCHHHHHHHHcCCCCCcCc------cEecCCeEEEEEEEeeccC
Confidence 6999999999 899999999999999999998 8899999999999887653
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.011 Score=63.42 Aligned_cols=260 Identities=16% Similarity=0.126 Sum_probs=136.8
Q ss_pred cchhhhhhhhc------ccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEec
Q psy16512 59 LKDICYLDYTG------AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFT 130 (815)
Q Consensus 59 ~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t 130 (815)
..+.-|+|..+ -+.-.+++.+++.+++..- ...|+.-..+ .-++.+.+.+.++- +.+ .|.|.
T Consensus 53 ~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~e--------av~l~~~l~~~~~~~~~~--rvff~ 122 (433)
T KOG1401|consen 53 PDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLE--------AVELEEVLSAVLGKGSAE--RVFFC 122 (433)
T ss_pred CCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHH--------HHHHHHHHHhcccCCCcc--EEEEe
Confidence 34456666554 2233477788877776542 1122221111 23455566666632 233 39999
Q ss_pred CCchhhHHHHHhhhcc-----C-CCc--EEEecCC-CcchhhHHHHhhccc-eEEcC---chh----hhcchhhhhhhhh
Q psy16512 131 SGATSAIKTVSEYFEF-----N-EGS--FIYLTDN-HTSVLGMRELVKTNQ-IYSFS---VDD----ARNMLNEFKESQE 193 (815)
Q Consensus 131 ~g~t~al~~~~~al~~-----~-~gd--vv~~~~~-h~s~~~~~~~~~~~g-~v~~~---~~~----~~~~~~~~~~l~~ 193 (815)
+++|+|++.++..... . .+. +|..... |.-..+......... ..+.+ ++- .-|...+++.++
T Consensus 123 nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~- 201 (433)
T KOG1401|consen 123 NSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFE- 201 (433)
T ss_pred cCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHH-
Confidence 9999999988865531 1 111 6666654 333444444332222 22221 211 112333333222
Q ss_pred hhhhcCCCccEEEEecccCCCccccChH----HHHHHhhccccccccccCCCCeEEEEeccccc-CCCCC----CCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYPLS----WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSNML----DLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~l~----~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~~----dl~~~~ 264 (815)
.......+|++....-.-|....-. .|.++|+ ++|+++|.|+.+.. |..-. ..-...
T Consensus 202 ---~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~-----------~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~ 267 (433)
T KOG1401|consen 202 ---SHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECD-----------DNGVLLIFDEVQTGLGRLGYGWAQEYFGVT 267 (433)
T ss_pred ---hCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHh-----------hcCceEEeehhhhCccccchHHHHHHhCcC
Confidence 2233468888888876666665433 3555666 99999999988652 22110 001135
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGF 342 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al 342 (815)
||+.+ +-|.+++---+|+.++++++.+.+.+.-. -+..+| -|.++..+...++
T Consensus 268 PDI~t--~aK~L~gGlPigA~~v~~kV~~~i~~~~~-----------------------l~hg~Tf~gnpLacsa~~~~l 322 (433)
T KOG1401|consen 268 PDITT--VAKPLGGGLPIGATGVRDKVAEMISPGDH-----------------------LYHGGTFSGNPLACSAGIKVL 322 (433)
T ss_pred Cccee--ehhhccCCceeEEEeehHHHHhhcCCCCc-----------------------cccCcccCCChhhhhHHHHHH
Confidence 78755 55876622128999999999877754321 011112 2345555555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
+.+.+- ...+++.+.-+.|++.|.+.
T Consensus 323 ~~l~~~-e~~k~vs~~~k~L~~~l~e~ 348 (433)
T KOG1401|consen 323 DELKDP-ETLKNVSKIGKELRKLLDEY 348 (433)
T ss_pred HHHcCH-HHHHHHHHHHHHHHHHHHHH
Confidence 555432 22256666666666665544
|
|
| >COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=2.9e-05 Score=83.88 Aligned_cols=51 Identities=51% Similarity=0.843 Sum_probs=46.3
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~ 60 (815)
.||++||..++.|+|+|++++|.++.|+++. ||+|+||||||++++.++..
T Consensus 216 ~g~~~~~~~~~~~~p~f~~a~~~~~~g~~~~------pv~t~~g~~ii~v~~~~~~~ 266 (320)
T COG0760 216 GGGLLGWNKKGQLVPEFRKAAFILKVGEVSA------PVKTSFGYHIIKVEKKRDAK 266 (320)
T ss_pred CCccccccCccccChHHHHHHHhccCccccc------ccccchHHHHHHHHhhhhhh
Confidence 4788888999999999999999999999998 88999999999998876544
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0052 Score=63.11 Aligned_cols=272 Identities=15% Similarity=0.153 Sum_probs=138.6
Q ss_pred EecCCchhhHHHHHhhhcc--CCCcEEEecCCCcchhhHHHHhhccc--eEEcC--chhhhcchhhhhhhhhhhhhcCCC
Q psy16512 128 IFTSGATSAIKTVSEYFEF--NEGSFIYLTDNHTSVLGMRELVKTNQ--IYSFS--VDDARNMLNEFKESQENVENMRHS 201 (815)
Q Consensus 128 v~t~g~t~al~~~~~al~~--~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 201 (815)
+-+-++|.|+.+.+.-+.. ....|-++.+..++.....+.++-.- ..+.- .+..++.+.+...| .. .+.
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl---~~--APe 177 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDL---ES--APE 177 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHH---hh--CCC
Confidence 4456788898887765531 22226666655544433333222111 22221 12234444443322 11 233
Q ss_pred ccEEEEecc-cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc-cccCCCCCCCCCC--------CCc-EEEE
Q psy16512 202 NSLFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA-TYCGSNMLDLKQH--------QPD-FISI 270 (815)
Q Consensus 202 t~lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a-~~~g~~~~dl~~~--------~~D-~vv~ 270 (815)
..++++.+. +||||.=..-+...++++.+ ++.+.+.+.|-+ |++....++-+.| +.. |++-
T Consensus 178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vi--------k~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~Q 249 (410)
T KOG1412|consen 178 GSIIILHACAHNPTGMDPTREQWKQIADVI--------KSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQ 249 (410)
T ss_pred CcEEeeeccccCCCCCCCCHHHHHHHHHHH--------HhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEh
Confidence 455555555 89999877666544444422 167888999955 5444444554443 233 4555
Q ss_pred ccccccccCCc--ceEEEE--ecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-
Q psy16512 271 SFYKMFGYPTG--LGALIV--KQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT- 344 (815)
Q Consensus 271 S~~K~~g~p~G--~G~l~~--~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~- 344 (815)
||.|.|| ..+ +|.|.+ ++. .+..+...+ .+.-|-....|+..+.-.....|..
T Consensus 250 SFaKNfG-lYneRvGnltvv~~n~a~i~~v~SQl--------------------~lviR~~~SNPPAyGArIV~kvL~tP 308 (410)
T KOG1412|consen 250 SFAKNFG-LYNERVGNLTVVVNNPAVIAGVKSQL--------------------TLVIRSNWSNPPAYGARIVHKVLSTP 308 (410)
T ss_pred hhhhhcc-cccccccceEEEecChhHHHHHHHHH--------------------HHHHhhccCCCcchhhHHHHHHhcCH
Confidence 9999999 655 676654 322 222221111 0011222223333333333333321
Q ss_pred --HHhhh---hhH-HHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 345 --MEKKR---KSF-TNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 345 --l~~~~---~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
.+++. ..| .|+.+.|..|++.|..++ .||- ..+ ..+.++++| .+ +++..+..+.
T Consensus 309 ~lre~W~~sik~MssRI~~MR~aLrd~L~aL~----TPGtWDHI--------~~QiGMFSy--TG-----Ltp~qV~~li 369 (410)
T KOG1412|consen 309 ELREQWIQSIKTMSSRIKKMRTALRDHLVALK----TPGTWDHI--------TQQIGMFSY--TG-----LTPAQVDHLI 369 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcHHHH--------Hhhccceee--cC-----CCHHHHHHHH
Confidence 11221 223 888889999999988872 2321 111 123445444 33 3344566666
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+.+.|.+.. .| |+++...| ...+|+..++|.+.+.
T Consensus 370 ~~h~vyLl~-----------------------------------------~G--RInisGLN-~~NveyVAkAIde~Vr 404 (410)
T KOG1412|consen 370 ENHKVYLLS-----------------------------------------DG--RINISGLN-MKNVEYVAKAIDETVR 404 (410)
T ss_pred HhceEEEec-----------------------------------------CC--cEeeeccc-cccHHHHHHHHHHHHH
Confidence 788887642 13 55655554 4678888888888654
|
|
| >KOG2040|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0042 Score=69.40 Aligned_cols=290 Identities=14% Similarity=0.093 Sum_probs=162.7
Q ss_pred HHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHH-hhccc-eEEcCchhhhcchh
Q psy16512 110 MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMREL-VKTNQ-IYSFSVDDARNMLN 186 (815)
Q Consensus 110 ~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~-~~~~g-~v~~~~~~~~~~~~ 186 (815)
-+..++++-|.+-.+ .-+..-+|+|-++++.+....++. +++....||......+. ++..+ .+.+.. ....+
T Consensus 168 yQTmi~dlTGL~~aN--ASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~--~~~~~- 242 (1001)
T KOG2040|consen 168 YQTMITDLTGLPMAN--ASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD--IKEAD- 242 (1001)
T ss_pred hHHhhhhccCCcccc--hhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEecC--HHHhh-
Confidence 456678888887665 555566777777777766545555 88888999987654433 33333 211111 11111
Q ss_pred hhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC-CCCCCCCCCCC
Q psy16512 187 EFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SNMLDLKQHQP 265 (815)
Q Consensus 187 ~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~~~dl~~~~~ 265 (815)
...+...-+.+..|.+ -|.+.|.+++.+.++ ..|.++++- +.... ..-.+...+++
T Consensus 243 ----------~s~~~v~gvlvQYP~t-~G~i~d~~el~~~a~-----------~~~s~vv~a-tDLLaLtiLrpPgefGa 299 (1001)
T KOG2040|consen 243 ----------YSSKDVSGVLVQYPDT-EGSVLDFDELVELAH-----------ANGSLVVMA-TDLLALTILRPPGEFGA 299 (1001)
T ss_pred ----------ccccceeEEEEEcCCC-CCcccCHHHHHHHhh-----------ccCceEEEe-ehhhHHHccCChhhcCc
Confidence 1123355666666654 499999999999999 677665432 22221 12223456799
Q ss_pred cEEEEccccccccCCc-----ceEEEEecccccccCcccccCceEEEEecCCc--ccc---cccCccccccCCCCChhHH
Q psy16512 266 DFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGGGTVKISMANEN--FHI---KKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~--~~~---~~~~~~~~~~~gt~~~~~~ 335 (815)
|+++.|.+.+.- |-| .||+.+++++.+.+.-.+.|- ..+.... +.. .++.. -|..-.|.|+...
T Consensus 300 DIavGSsQRFGV-PlGYGGPHAaFfAv~~~l~R~mPGRiiGv----tkD~~gk~a~RLALQTREQH-IrRDKATSNICTA 373 (1001)
T KOG2040|consen 300 DIAVGSSQRFGV-PLGYGGPHAAFFAVSESLVRMMPGRIIGV----TKDALGKEAYRLALQTREQH-IRRDKATSNICTA 373 (1001)
T ss_pred eeeeccccccCc-cccCCCchHHHHHHHHHHHhhCCCceEee----eecccccHHHHHHHHHHHHH-hhhhccchhhhHH
Confidence 999999987432 543 466666655543332222221 1111111 110 01111 1233457777666
Q ss_pred HHHHHHHHHHHhh--hh----hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc
Q psy16512 336 ISLKYGFDTMEKK--RK----SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 336 ~al~~al~~l~~~--~~----~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~ 408 (815)
.|+.+-+..+-.+ |. .+ +++..++..|...|+.. +.++....- --.+.+++.. +
T Consensus 374 QALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-------ghel~~k~f-------FDTLkI~~~~-s---- 434 (1001)
T KOG2040|consen 374 QALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-------GHELQHKPF-------FDTLKIRCGC-S---- 434 (1001)
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-------chhhccccc-------cceEEEEecC-c----
Confidence 6665544433222 11 22 77888888899999876 555553321 1122233322 1
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
..++...+.+++|.+|.- ..+.|-+|+---.+++|++.|+
T Consensus 435 -~~~~l~rA~~~~iNlr~~---------------------------------------ed~tigvslDETv~~~DvddLl 474 (1001)
T KOG2040|consen 435 -AEEVLDRAAKRQINLRLV---------------------------------------EDGTIGVSLDETVTEKDVDDLL 474 (1001)
T ss_pred -HHHHHHHHHhhcCceEEe---------------------------------------ecCceEEeecccccHHHHHHHH
Confidence 234666667777777631 1367888888778899999998
Q ss_pred HHHH
Q psy16512 489 SFLN 492 (815)
Q Consensus 489 ~~L~ 492 (815)
..+.
T Consensus 475 ~vf~ 478 (1001)
T KOG2040|consen 475 WVFN 478 (1001)
T ss_pred HHHc
Confidence 8775
|
|
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.2 Score=52.77 Aligned_cols=198 Identities=14% Similarity=0.215 Sum_probs=114.0
Q ss_pred ccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC--------CCCCCCCCCcEEE
Q psy16512 202 NSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--------MLDLKQHQPDFIS 269 (815)
Q Consensus 202 t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--------~~dl~~~~~D~vv 269 (815)
...+++.-.++.-|.-.- ...+.++++ +||+.+|||++|..|.. ..++ ...+|+++
T Consensus 272 VaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~-----------Kh~v~fivDEVQTGgGaTGk~WaHehw~l-~~PpD~vT 339 (484)
T KOG1405|consen 272 VAAIIVEPIQSEGGDNHASPDFFRKLRDITK-----------KHGVAFIVDEVQTGGGATGKFWAHEHWNL-DSPPDVVT 339 (484)
T ss_pred eEEEEeechhccCCCccCCHHHHHHHHHHHH-----------hcCeEEEeeeeecCCCccCceeeehhcCC-CCCcccee
Confidence 467777777777777553 444677777 99999999988765432 2233 22578754
Q ss_pred EccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 270 ISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 270 ~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|+|-|. .. || +.++++... ..| +.|..+.-...-.+.+.+.++.+++.
T Consensus 340 --FSKK~q-~g--Gf-fh~~~frpn--~pY-----------------------rifNTWmGdP~k~lll~~vv~~I~~~- 387 (484)
T KOG1405|consen 340 --FSKKFQ-TG--GF-FHDEEFRPN--EPY-----------------------RIFNTWMGDPSKNLLLEEVVQEIKRE- 387 (484)
T ss_pred --hhhhhh-cC--cc-ccCcccCCC--chH-----------------------HHhhhhcCChHHHHHHHHHHHHHhHH-
Confidence 567665 22 33 233333211 011 11222222333344455556655543
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
.. ..+...-+.|..+|.++.... |+ .+ .+...+|.++++.++..... +.+...+..+|+.+..
T Consensus 388 -~Ll~n~~~vG~~l~~gL~~Lq~~~--p~-~~------~~~RGrGTF~a~d~ps~~~R----dk~i~~~~~nGv~~GG-- 451 (484)
T KOG1405|consen 388 -DLLNNVAHVGKALLKGLLELQAKY--PG-KI------NNLRGRGTFIAWDCPSGSIR----DKLILIARLNGVNLGG-- 451 (484)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhC--ch-hh------hcccccceEEEEeCCChHHH----HHHHHHHHHcCceecc--
Confidence 22 566666777777776652100 11 11 11244688999998864432 2477778888988742
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||+ ..||+-..+--.+...+-+++.+.+++.
T Consensus 452 ---------------------------Cg~----------~siRfRPsLvf~~~Ha~i~l~~~~k~l~ 482 (484)
T KOG1405|consen 452 ---------------------------CGD----------KSIRFRPSLVFRKHHADIFLDIFDKILA 482 (484)
T ss_pred ---------------------------ccc----------ceeeeccceeehhhhHHHHHHHHHHHhc
Confidence 222 3577766655577888889999988764
|
|
| >KOG2142|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.0079 Score=67.59 Aligned_cols=174 Identities=27% Similarity=0.381 Sum_probs=117.3
Q ss_pred HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcc--hhhHHHHhhccc--eE--EcC-chhh
Q psy16512 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTS--VLGMRELVKTNQ--IY--SFS-VDDA 181 (815)
Q Consensus 109 ~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s--~~~~~~~~~~~g--~v--~~~-~~~~ 181 (815)
+++.++..+++.+.++|..++|.+-..|..+.++++++.-...++....||+ +..+.+.++..| .. ... +...
T Consensus 180 kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~lltiFgyetgAvlv~~r~A~~~Ggkt~sa~f~wp~~~ 259 (728)
T KOG2142|consen 180 KIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPKLLTIFGYETGAVLVMNRSAELKGGKTASAEFSWPMLY 259 (728)
T ss_pred eeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccchheeecCCCchhhHHHhhhhHhhcCccceeecccchHH
Confidence 3777888899999999999999999999999999997433336777778877 444555666566 11 111 1112
Q ss_pred hcchhhhhhhhh-hhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---C
Q psy16512 182 RNMLNEFKESQE-NVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---M 257 (815)
Q Consensus 182 ~~~~~~~~~l~~-~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~ 257 (815)
+.-..+.+.++. .....+....+.+++..+-.||.++++.+.. ++. +.++.+++|+-+. |.. .
T Consensus 260 l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt-~al-----------~~~whvlLda~~l-G~kdmd~ 326 (728)
T KOG2142|consen 260 LLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMT-LAL-----------ANNWHVLLDALAL-GPKDMDS 326 (728)
T ss_pred HHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHH-HHH-----------hhhHHHHHhhhcc-CcchHhh
Confidence 222233332210 0001111246888999999999999999975 344 5689999998876 422 1
Q ss_pred CCCCCCCCcEEEEcccccccc--CCcceEEEEeccccccc
Q psy16512 258 LDLKQHQPDFISISFYKMFGY--PTGLGALIVKQKSAHVL 295 (815)
Q Consensus 258 ~dl~~~~~D~vv~S~~K~~g~--p~G~G~l~~~~~~~~~l 295 (815)
+.+..+.+|+...|+++.||- |.|.|++.+++..+-.+
T Consensus 327 yglS~f~Pdfqg~sf~fv~g~d~psgfGcl~VkKs~i~~l 366 (728)
T KOG2142|consen 327 YGLSLFQPDFQGPSFYFVFGRDDPSGFGCLEVKKSAISGL 366 (728)
T ss_pred hhhhccCccceeeeEEEEeccCCCCceeeeeeehhhhhce
Confidence 233445699999999999996 45699999998775433
|
|
| >PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.027 Score=59.78 Aligned_cols=129 Identities=20% Similarity=0.222 Sum_probs=92.6
Q ss_pred ccccccccccccccccccccccCCCCCCccEEeeeeeccccccCceeeccEEEEE-ecCCCcCcEEEEEeCCCceEEecc
Q psy16512 504 IGDICLINNQRAESSKGFFLNHSDNINKENKLVSIYIYPVKACGFFKVESKWEVT-ASGLKFDRQWMIITHSGVPLTQKL 582 (815)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~yPvKs~~g~~~~~~~~~~-~~Gl~~DR~~~~~~~~~~~~t~~~ 582 (815)
+.++.++++.+ --|+-|.. .+..+.++|.+|++-|-++..=..++ +..+. ..|+++|+.
T Consensus 138 i~~i~l~~k~g--gksg~~~~--~~~~~~~~VlsI~is~~~gi~K~~v~-~~~~v~~~GieGD~H--------------- 197 (308)
T PRK14499 138 ITDVRLIEKSG--GKSGHYIF--ERRNKTAKVVSINISRQKGTPKEPVE-EAVLIENHGIEGDAH--------------- 197 (308)
T ss_pred EeeEEEEEecC--CcCCCccc--cccCCCCEEEEEEeCCCCCccceecC-ceEEEccCCCCCCcC---------------
Confidence 44555566552 33455553 34557789999999999999999999 77654 689999971
Q ss_pred ccccccccceeecCCCeEEEEeCCCCeeEEEecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCC
Q psy16512 583 EKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKR 662 (815)
Q Consensus 583 ~p~l~~i~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~ 662 (815)
+ |.. .
T Consensus 198 ---------------------h-Gg~-----------------------------------------~------------ 202 (308)
T PRK14499 198 ---------------------A-GTW-----------------------------------------H------------ 202 (308)
T ss_pred ---------------------C-CCc-----------------------------------------C------------
Confidence 0 111 0
Q ss_pred CCCCcccccccccceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCcceEEEecCCCC-eEEEecc
Q psy16512 663 SSKRNINSFSNMGQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGL-LSFQVTS 741 (815)
Q Consensus 663 ~~~~~~~~f~d~~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w~~i~Ig~~~~~-~~~~~~~ 741 (815)
..+++++.++++.+++ ++. ..+.+-+||.||+++|. ....=.-=++++|| + +.|+++.
T Consensus 203 ------------RqVsl~~~E~~~~~~~-~g~---~~l~pG~fGENLtv~Gi-dl~~l~iGdrlrIG----~~avLeVt~ 261 (308)
T PRK14499 203 ------------RQVSLLDISSIKKMEE-YGL---KGLCFGKFAENITTENL-DLQKISLGTKLKIG----DNVVLEISQ 261 (308)
T ss_pred ------------ceEEEcCHHHHHHHHh-cCC---cCCCcccccceEEEcCc-CHHHCCCCCEEEEC----CcEEEEEEe
Confidence 1388999999999873 322 13778999999999998 43222223999999 7 9999999
Q ss_pred cCCCccc
Q psy16512 742 QCTRCQY 748 (815)
Q Consensus 742 ~~~RC~~ 748 (815)
||..|.-
T Consensus 262 pr~PC~~ 268 (308)
T PRK14499 262 IGKKCHG 268 (308)
T ss_pred CCCCCcC
Confidence 9999974
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.16 Score=53.35 Aligned_cols=201 Identities=12% Similarity=0.095 Sum_probs=97.6
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH-cCCC-----CCceeEEecCCchh
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY-FNTD-----SDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~-~g~~-----~~~~~iv~t~g~t~ 135 (815)
-.|-|..+....-+.|.++-.+-... +.+.-+..-.. +.+....-+++ ||.+ ...-..+-+-++|.
T Consensus 60 GaYRdd~gKp~vL~~VrkAE~ql~~~----~ldKEYlpI~G----l~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTG 131 (427)
T KOG1411|consen 60 GAYRDDNGKPYVLPSVRKAEQQLASL----SLDKEYLPITG----LAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTG 131 (427)
T ss_pred cceecCCCCeeeeHHHHHHHHHHhhh----cccchhccccc----hHHHHHHHHHHhhcCCchhhhccceeEEEeccCcc
Confidence 46666666666666666654332221 11111111111 34455555554 4432 22211233467888
Q ss_pred hHHHHHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 136 AIKTVSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 136 al~~~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
|+.+.+.-+. +-++. |.++.++..........++... +..-++ ...+|.....+-| .+.. +...++.=...
T Consensus 132 aLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl---~~~p-~gs~ilLhaCa 207 (427)
T KOG1411|consen 132 ALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDL---GEAP-EGSIILLHACA 207 (427)
T ss_pred hhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHH---hcCC-CCcEEEeehhh
Confidence 8887765543 13454 7777764333222222222211 111121 2233333322212 1111 22333344556
Q ss_pred cCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccc-ccCCCCCCCCC--------CCCcEEEE-ccccccc
Q psy16512 211 SNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCGSNMLDLKQ--------HQPDFISI-SFYKMFG 277 (815)
Q Consensus 211 ~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g~~~~dl~~--------~~~D~vv~-S~~K~~g 277 (815)
+||||+=...+. |.++.+ +.+.+-+.|.+. ++....+|.++ -+.+++++ |+.|.+|
T Consensus 208 HNPTGvDPt~eqw~ki~~~~~-----------~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMG 276 (427)
T KOG1411|consen 208 HNPTGVDPTKEQWEKISDLIK-----------EKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMG 276 (427)
T ss_pred cCCCCCCccHHHHHHHHHHhh-----------hccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcc
Confidence 899998765544 556666 678888999763 33333333332 13455544 9999888
Q ss_pred cCCc--ceEEE
Q psy16512 278 YPTG--LGALI 286 (815)
Q Consensus 278 ~p~G--~G~l~ 286 (815)
..| +|.+-
T Consensus 277 -LYgERvGa~s 286 (427)
T KOG1411|consen 277 -LYGERVGALS 286 (427)
T ss_pred -hhhhccceeE
Confidence 666 67663
|
|
| >PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.0093 Score=54.16 Aligned_cols=51 Identities=33% Similarity=0.525 Sum_probs=38.7
Q ss_pred CCccccccCC-CCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccch
Q psy16512 5 SGDLGWVVRG-SMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKD 61 (815)
Q Consensus 5 gg~lgw~~~~-~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~~ 61 (815)
+.+++|+... .+.++|.+++|.++.|++|+ |+++.+|||++++.++.+...
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~l~~g~~s~------~i~~~~~~~v~~v~~~~~~~~ 113 (121)
T PF13145_consen 62 QSDLGIFTDESDLPPEFADALFKLKPGEVSG------PIESGNGYYVVKVKERNPARV 113 (121)
T ss_dssp CCCCCCCETTHHH-HHHHCCHTT-STT-EEE------EEEETTEEEEEEEEEEEE---
T ss_pred cccccccccccccCHHHHHHHhcCCCCCeee------eEEECCEEEEEEEEeecCCCC
Confidence 4667777764 58899999999999999998 789999999999988766433
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.14 Score=48.75 Aligned_cols=50 Identities=22% Similarity=0.419 Sum_probs=38.7
Q ss_pred HHHHHHHHHhHc----C----CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCc
Q psy16512 107 IDQMRTKILQYF----N----TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHT 159 (815)
Q Consensus 107 ~~~~r~~la~~~----g----~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~ 159 (815)
..++|+++++++ | +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd~--Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDADM--IVLSAGATAANEIIMFCIA-DPGDAFLVPTPYYA 152 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchhh--eEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCCC
Confidence 445555555544 5 45665 9999999999999999999 9999 888887665
|
|
| >KOG3843|consensus | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.91 Score=45.92 Aligned_cols=151 Identities=12% Similarity=0.053 Sum_probs=78.4
Q ss_pred hHHHHHhhhcc-CCC-c-EEEecCCCcchhhHHHHhhccc-eE-EcCc-hh-hhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 136 AIKTVSEYFEF-NEG-S-FIYLTDNHTSVLGMRELVKTNQ-IY-SFSV-DD-ARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 136 al~~~~~al~~-~~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v-~~~~-~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
.+.+.+.++.. +|. . +|.......|.+...-.++-.. .+ ++-+ +. .-|++..+..++ ...+.--+.+.+
T Consensus 88 slslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~ie----e~g~dcilci~s 163 (432)
T KOG3843|consen 88 SLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIE----ELGEDCILCIHS 163 (432)
T ss_pred cHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHH----HhCCceEEEEee
Confidence 45666666652 222 2 7777776666544333333222 21 2222 22 234444444332 223332222222
Q ss_pred cc-cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-C-----CCCCCCCcEEEEccccccccCCc
Q psy16512 209 AE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-L-----DLKQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 209 ~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-~-----dl~~~~~D~vv~S~~K~~g~p~G 281 (815)
.- +...-....+++|+.+|. .|+++-+|..++++-... + ...--.+|.++-|+.|.|..|-|
T Consensus 164 ttscfapr~pd~leaiaaica-----------~~diphivnnayglqsee~i~~iaa~~~~grida~vqsldknf~vpvg 232 (432)
T KOG3843|consen 164 TTSCFAPRSPDNLEAIAAICA-----------AHDIPHIVNNAYGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVG 232 (432)
T ss_pred cccccCCCCCchHHHHHHHHH-----------ccCchhhhccccccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecc
Confidence 11 111122334899999999 899999999887653210 0 00111368899999999998876
Q ss_pred ceEEE-EecccccccCccccc
Q psy16512 282 LGALI-VKQKSAHVLNKTFYG 301 (815)
Q Consensus 282 ~G~l~-~~~~~~~~l~~~~~g 301 (815)
-+++. .++.+++.+.+.|.|
T Consensus 233 gaiia~fk~n~iq~iak~ypg 253 (432)
T KOG3843|consen 233 GAIIAAFKDNFIQEIAKMYPG 253 (432)
T ss_pred hhHhhHhHHHHHHHHHHhCCC
Confidence 32222 356666655555544
|
|
| >PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=3.1 Score=42.18 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=71.7
Q ss_pred cceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCc---ceEEEecCCCCeEEEecccCCCcccccc
Q psy16512 675 GQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW---DQVLIETNDGLLSFQVTSQCTRCQYIYI 751 (815)
Q Consensus 675 ~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w---~~i~Ig~~~~~~~~~~~~~~~RC~~~~v 751 (815)
..+++.+.++.+..++.++.. ...+.+--|==||.++|. .|++- ..++|| ++.|+|+.|..-|- .+
T Consensus 55 kAV~~y~~e~y~~w~~~~~~~-~~~l~~G~fGENLtv~Gl----~e~~v~IGD~~riG----~avleVsqpR~PC~--kl 123 (223)
T PRK11536 55 RALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDGL----TESNVFIGDIFRWG----EALIQVTQPRSPCY--KL 123 (223)
T ss_pred ceEEEcCHhHHHHHHHHcccc-ccccCCCCccCCEEecCc----ChhhCCccCEEEEC----CEEEEEecCCCCCC--ch
Confidence 459999999999998887531 123445578899999976 45554 999999 99999999999994 33
Q ss_pred CccCCCCCCChhHHHHhccccccccCcccccccccccccce
Q psy16512 752 DQETALNTDVPLGEYQTRNFSTVSLNVKEFFNNLEKTYNQY 792 (815)
Q Consensus 752 d~~tg~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~~~ 792 (815)
+...+. ++..+.+.+.+++ |.||.++..|.-++
T Consensus 124 ~~r~~~--~~~~~~~~~~g~~------G~Y~RVL~~G~V~~ 156 (223)
T PRK11536 124 NYHFDI--SDIAQLMQNSGKC------GWLYRVIAPGKVSA 156 (223)
T ss_pred hhhccc--hhHHHHHHhhCCc------EEEEEEECCcEEcC
Confidence 433333 4555666654442 88999988776544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 815 | ||||
| 1fjd_A | 104 | Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER | 5e-19 | ||
| 3ui4_A | 101 | 0.8 A Resolution Crystal Structure Of Human Parvuli | 5e-19 | ||
| 1eq3_A | 96 | Nmr Structure Of Human Parvulin Hpar14 Length = 96 | 5e-19 | ||
| 1elq_A | 390 | Crystal Structure Of The Cystine C-S Lyase C-Des Le | 2e-06 | ||
| 1p3w_B | 404 | X-Ray Crystal Structure Of E. Coli Iscs Length = 40 | 5e-06 | ||
| 3lvj_A | 423 | Crystal Structure Of E.Coli Iscs-Tusa Complex (Form | 6e-06 | ||
| 1n2t_A | 386 | C-Des Mutant K223a With Gly Covalenty Linked To The | 7e-06 | ||
| 2rqs_A | 97 | 3d Structure Of Pin From The Psychrophilic Archeon | 3e-05 | ||
| 3rfw_A | 252 | The Virulence Factor Peb4 And The Periplasmic Prote | 3e-05 | ||
| 1zk6_A | 93 | Nmr Solution Structure Of B. Subtilis Prsa Ppiase L | 7e-04 |
| >pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104 | Back alignment and structure |
|
| >pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101 | Back alignment and structure |
|
| >pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96 | Back alignment and structure |
|
| >pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390 | Back alignment and structure |
|
| >pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404 | Back alignment and structure |
|
| >pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423 | Back alignment and structure |
|
| >pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386 | Back alignment and structure |
|
| >pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97 | Back alignment and structure |
|
| >pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252 | Back alignment and structure |
|
| >pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 815 | |||
| 3ui4_A | 101 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 4e-24 | |
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 2e-23 | |
| 1jns_A | 92 | Peptidyl-prolyl CIS-trans isomerase C; alpha-beta | 9e-18 | |
| 2rqs_A | 97 | Parvulin-like peptidyl-prolyl isomerase; CIS/trans | 6e-17 | |
| 1zk6_A | 93 | Foldase protein PRSA; alpha/beta structure, isomer | 2e-15 | |
| 2jzv_A | 111 | Foldase protein PRSA; ppiase, parvulin, proline is | 4e-15 | |
| 4g2p_A | 110 | Chaperone SURA; structural genomics, PSI-biology, | 4e-15 | |
| 3rfw_A | 252 | Cell-binding factor 2; SURA-like, chaperone; 2.20A | 1e-14 | |
| 3i6c_A | 123 | Peptidyl-prolyl CIS-trans isomerase NIMA- interact | 2e-14 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 2e-14 | |
| 1j6y_A | 139 | Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN | 2e-14 | |
| 3gpk_A | 112 | PPIC-type peptidyl-prolyl CIS-trans isomerase; rot | 3e-14 | |
| 2kgj_A | 102 | Peptidyl-prolyl CIS-trans isomerase D; prolyl isom | 4e-14 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 5e-14 | |
| 2pv1_A | 103 | Chaperone SURA; surviVal protein A, peptidyl-proly | 3e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-06 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 2e-11 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 3e-08 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 9e-08 | |
| 3nrk_A | 325 | LIC12922; NC domain, parvulin domain, SURA homolog | 1e-07 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 2e-07 | |
| 1m5y_A | 408 | SurviVal protein, surviVal protein SURA; surviVal | 2e-07 | |
| 1m5y_A | 408 | SurviVal protein, surviVal protein SURA; surviVal | 2e-06 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 6e-05 | |
| 3rgc_A | 252 | Possible periplasmic protein; ppiase, chaperone; 2 | 8e-05 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 2e-04 |
| >3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 4e-24
Identities = 37/51 (72%), Positives = 46/51 (90%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 50 GDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 100
|
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 2e-23
Identities = 18/135 (13%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFD 594
+ + P+ CG + ++W++ +G L + L L V +
Sbjct: 1 MSTTAYQPIAECGATTQSE-------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSV--E 51
Query: 595 ITRNIMTLCYKSSGSTVEIGID---NEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNR 651
+ + L ++I +D ++ V + D G A W+
Sbjct: 52 LRMGYLVLKAPGM-LRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGV 110
Query: 652 KGLRLIRISKRSSKR 666
R++++ ++
Sbjct: 111 P-CRILKVHPDMAEV 124
|
| >1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 9e-18
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57
GDLG +G MV F F P+ P+ T+FGYHII V +N
Sbjct: 47 GDLGEFRQGQMVPAFDKVVFSCPVLEPTGPL------HTQFGYHIIKVLYRN 92
|
| >2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-17
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
G LG+ RG MV F+DAAF+L + V+ PV K++FGYH+I G
Sbjct: 54 GSLGYFGRGKMVKPFEDAAFRLQVGEVSEPV------KSEFGYHVIKRLG 97
|
| >1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-15
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 6 GDLGWVVR-GSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW + G M F AAFKL V++PV KT++GYHII +
Sbjct: 48 GDLGWFAKEGQMDETFSKAAFKLKTGEVSDPV------KTQYGYHIIKKTEE 93
|
| >2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-15
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
G+LG+V++G +F+ A FKL V+ V K+ FGYHII +
Sbjct: 68 GELGYVLKGQTDKDFEKALFKLKDGEVSEVV------KSSFGYHIIKAD 110
|
| >4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-15
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW F+DA KL ++ PV + FG+H+I +
Sbjct: 63 GDLGWATPDIFDPAFRDALTKLHKGQISAPV------HSSFGWHLIELLDT 107
|
| >3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G+LGW + +MV F DAAF L T+ T P+KT FGYH+I+ E
Sbjct: 163 GELGWFDQSTMVKPFTDAAFALKNGTI-----TTTPVKTNFGYHVILKENS 208
|
| >3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
GDLG RG M F+DA+F L ++ PV T G HII+
Sbjct: 80 GDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 122
|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 2e-14
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLG+ +G M F++AAF L + V+N + +T G HI+ G
Sbjct: 134 GDLGFFSKGQMQPPFEEAAFNLHVGEVSNII------ETNSGVHILQRTG 177
|
| >1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-14
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55
GDLG RG M F++A + L + +++ V T G HII
Sbjct: 96 GDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKRTA 139
|
| >3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-14
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ + E A + + PV + + G+ I+ + K
Sbjct: 59 GDLGWIRLAQLPTELATTAASMGPGQLAGPV------EIRGGFSILYLIDK 103
|
| >2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 4e-14
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLP--ISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GD+GW+ ++ E ++A K +S IK+ G+ I+ ++
Sbjct: 50 GDMGWLEDATIPDELKNAGLKEKGQLSG---------VIKSSVGFLIVRLDDI 93
|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 5e-14
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
GDLG RG M F+DA+F L ++ PV T G HII+
Sbjct: 123 GDLGAFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 165
|
| >2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G +GW + G F A + P+ ++ G+HI+ V
Sbjct: 58 GQMGWGRIQELPGIFAQALSTAKKGDIVGPI------RSGVGFHILKVNDL 102
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 4e-12
Identities = 75/506 (14%), Positives = 156/506 (30%), Gaps = 150/506 (29%)
Query: 11 VVRGSMVGEFQDAAFKL-PI-------------STVNNPVYTEPPIKTKFGYHI--IMVE 54
V R + + A +L P + V V ++ K + I + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL- 189
Query: 55 GK--------NHLKDICYL---DYTGAGVYSQS---QMNQTIEQLKENIFSHPHGNS--V 98
L+ + Y ++T +S + +++ +L+ + S P+ N V
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS---GATSAIKTVSEYFEFNEGSFIYLT 155
L + V K FN ++ T+ T + + + + LT
Sbjct: 250 LLN--VQN-----AKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 156 DNHT-----SVLGM------RELVKTN----QIYSFSVDDARNMLNEFK----------- 189
+ L RE++ TN I + S+ D + +K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 190 ----ESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV-----------HRNHVFKK 234
E E + + L V+P ++ L W + + H+ + +K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 235 HFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFIS-----ISFYKMF-GYPTGLGALIVK 288
K S + L+LK + + + Y + + +
Sbjct: 420 QPKEST---ISIPSIY-------LELKVKLENEYALHRSIVDHYNIPKTFDS-------D 462
Query: 289 QKSAHVLNKTFY---GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345
L++ FY G H+K E+ + +L + F +
Sbjct: 463 DLIPPYLDQYFYSHIG------------HHLKNIEHPERMTLFRMVFL-----DFRF--L 503
Query: 346 EKKRKSFTNAFELSQYTY-------FYFKQLSYSNGQP--LVELY------HDTDYGESK 390
E+K + + A+ S FY + ++ + LV + + SK
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 391 YQGNIVNFNLLHKDGTYY--GYSEVQ 414
Y +++ L+ +D + + +VQ
Sbjct: 564 YT-DLLRIALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 118/723 (16%), Positives = 218/723 (30%), Gaps = 202/723 (27%)
Query: 92 HPHGNSVLSDFCVSEIDQMRTKILQY----FNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147
H H + + DF E IL F + D V +I + E
Sbjct: 1 HHHHHHM--DFETGEHQYQYKDILSVFEDAFVDNFDCKDV---QDMPKSILSKEEI---- 51
Query: 148 EGSFIYLTDNHTSVLGMRELV-----KTNQIYSFSVDDARNMLNEFKESQENVENMRHSN 202
I ++ + +V G L K ++ V++ + +F S E + S
Sbjct: 52 --DHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262
+Y + + L N N VF K+ SR ++ L A L +
Sbjct: 108 MTRMYIEQRD------RL--YND---NQVFAKYN-VSRLQPYLKLRQA---------LLE 146
Query: 263 HQP-DFISISFYKMFGYPTG---LGALIVKQKSAHVL--NKTFYGGGTVKISMANENFHI 316
+P + I + G +G + + K F+ +++ N N
Sbjct: 147 LRPAKNVLI--DGVLG--SGKTWVALDVCLSYKVQCKMDFKIFW------LNLKNCN--- 193
Query: 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQP 376
+ + E + L Y D ++T+ + S +
Sbjct: 194 SPETVLEMLQK----------LLYQID------PNWTSRSDHSSNIKLRIHSIQAE---- 233
Query: 377 LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ 436
L L Y LL VQN L C
Sbjct: 234 LRRLLKSKPYENC----------LLVLL-------NVQNAKAWNAFNL--SC-------- 266
Query: 437 RFLGLSDITIKFHFQQGHICGDDKDIIDG-KPTGSIRISYGHAS---NWDDVK-YFLSFL 491
+ L +T + K + D + IS H S D+VK L +L
Sbjct: 267 KIL----LTTR-----------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 492 NQYF--L-QQADFVSIGDICLINNQRAESSKGFFLNHSDNINKEN--KLVSIYIYPVKAC 546
+ L ++ + + +I AES + L DN N KL +I +++
Sbjct: 312 DCRPQDLPREVLTTNPRRLSII----AESIRD-GLATWDNWKHVNCDKLTTI----IESS 362
Query: 547 GFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLV--QPNFDITRNIMTLCY 604
V E FDR + + + L L L+ ++ +
Sbjct: 363 --LNVLEPAEYRKM---FDR--LSVFPPSAHIPTIL---LSLIWFDVIKSDVMVVVNKLH 412
Query: 605 KSS-------GSTVEIGIDNEGLDLCTSKVCSDKIT-------------GFDCGNAVANW 644
K S ST+ I + L ++ FD + + +
Sbjct: 413 KYSLVEKQPKESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 645 LDEQL-NRKG--LRLIRISKRSSK-RNI-NSFSNMGQYLLITLPSIQAQLENLNAIFELE 699
LD+ + G L+ I +R + R + F + Q + + A LN + +L+
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 700 NFVNRFRSNFVVSGQFEANAENDWDQVLIETNDGLLSF--QVTSQCTRCQYIYIDQETAL 757
+ N + +++++ + +L F ++ +Y + + AL
Sbjct: 529 FYKPYICDN-----------DPKYERLV----NAILDFLPKIEENLICSKYTDLLR-IAL 572
Query: 758 NTD 760
+
Sbjct: 573 MAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 9e-06
Identities = 56/412 (13%), Positives = 116/412 (28%), Gaps = 136/412 (33%)
Query: 483 DVKYFLSFLNQYF--------LQQADFVSIGD--ICLINNQRAESSKGFF-----LNHS- 526
D K + D VS + +++ E + F +N+
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 527 --DNINKENKLVS----IYIYPV-KACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLT 579
I E + S +YI + +V +K+ V+ R
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-------RL---------QPY 137
Query: 580 QKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDK--ITGFDC 637
KL + L ++P ++ + + K+ + VC D
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTW------------V---ALDVCLSYKVQCKMDF 182
Query: 638 GNAVANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITL-PSIQAQLENLNAIF 696
WL+ + +S + M Q LL + P+ ++ ++ + I
Sbjct: 183 K---IFWLN------------LKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 697 ELENFVNRFRSNFVVSGQFEANA----ENDWD-----------QVLIETNDGLLSFQVTS 741
+ + + S +E N N + ++L+ T ++ +++
Sbjct: 225 LRIHSIQAELRRLLKSKPYE-NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 742 QCTRCQYIYIDQ--------ET------ALNTDV-----------PL-----GE------ 765
T +I +D E L+ P E
Sbjct: 284 ATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 766 -----YQTRNFSTVSLNVKEFFNNLEKTYNQYNFCSSMILDE-TGIPT-VLC 810
++ N ++ ++ N LE + F + IPT +L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 60/364 (16%), Positives = 118/364 (32%), Gaps = 63/364 (17%)
Query: 59 LKDICYLDYTGAGVYSQSQM-NQTIEQLK---ENIFSHPHGNSVLSDFCVSEIDQMRTKI 114
L + Y ++ G Q + +E + + + + + I Q+R +
Sbjct: 14 LANKTYFNFGG-----QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQAL 68
Query: 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTD--NHTSVLGMRELVKTN- 171
+ FN D + + T T+ V ++++G I LTD + + ++ +
Sbjct: 69 AETFNVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFG 126
Query: 172 -QIYSFSVDDARNMLNEFKESQENV-ENMRHSNSLFVYPAESNFSGTKYPLSW-CNTVHR 228
F V N + ++ R L + +G PL+ R
Sbjct: 127 ITYRFFPVAATLNQGDAAAVLANHLGPKTR----LVILSHLLWNTGQVLPLAEIMAVCRR 182
Query: 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288
+ VL+D A GS LD + + D+ + + +K F P G+G L +
Sbjct: 183 HQ--------GNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIH 234
Query: 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE---------KFEDGTVNYLAIISLK 339
+N T+ G + I E +FE T Y L
Sbjct: 235 GDCLGEINPTYVGWRS-----------ITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLL 283
Query: 340 YGFDTMEK---KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396
++ + + + S++ + + L+ V S Q +V
Sbjct: 284 AALQLHQRQGTAEERYQAICQRSEFLW---RGLNQLPH---VHC-----LATSAPQAGLV 332
Query: 397 NFNL 400
+F +
Sbjct: 333 SFTV 336
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYK-MFGYPTGLGALIVKQKSAHVLN 296
+ D A G+ +DL Q D+ YK + G P + V + ++
Sbjct: 191 SHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 250
Query: 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----TMEKKR-K 350
+ G A E + +G+ ++ GT ++ ++ G D M R K
Sbjct: 251 QPLSGWFGHSRQFAMEPRYEPSNGI-ARYLCGTQPITSLAMVECGLDVFAQTDMASLRRK 309
Query: 351 SFTNAFELSQYTYFYFKQLSYSNGQPLV 378
S L+ +Q ++ LV
Sbjct: 310 S----LALTDLFIELVEQRCAAHELTLV 333
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 48/351 (13%), Positives = 96/351 (27%), Gaps = 62/351 (17%)
Query: 88 NIFSHPHGNSVLSDFCVSEI-DQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146
F L + I D + ++ ++ D T+GA A V
Sbjct: 39 CDFCTTGR---LDEIKTPPIHDFIHNQLPKFLGCDV----ARVTNGAREAKFAVMHSL-A 90
Query: 147 NEGSFIYLTDN-HTSVLGMRELVKTNQIYSFSVDDARN---MLNEFKESQENVENMRHSN 202
+ +++ + +N H S E N I D + F ++ E E +
Sbjct: 91 KKDAWVVMDENCHYSSYVAAERAGLN-IALVPKTDYPDYAITPENFAQTIE--ETKKRGE 147
Query: 203 SLFVYPA-ESNFSGTKYPLSW-CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-LD 259
+ G + V +L++ A Y M +
Sbjct: 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVP------------LLVNGA-YAIGRMPVS 194
Query: 260 LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319
LK+ DFI S +K +G + +K++ K
Sbjct: 195 LKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYK------------- 238
Query: 320 GLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379
+ T II+L F + ++ K + E ++ ++L
Sbjct: 239 NKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGI-------- 290
Query: 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC 430
G++ + +++ F+ L + H
Sbjct: 291 ----KQLGDNPHNHDLMFFHAEVLYE--ISKKAKGGRFFLYRELKSRKIHG 335
|
| >3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 15/54 (27%)
Query: 6 GDLGWVVRGSMVGEFQ---DAAFKLP---ISTVNNPVYTEPPIKTKFGYHIIMV 53
G + W+ + + A LP +S + + + I+
Sbjct: 216 GMVEWISSFDLYKYSKITATIAAPLPNGGVS---------EVFRDERKRYCILK 260
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 44/344 (12%), Positives = 96/344 (27%), Gaps = 50/344 (14%)
Query: 42 IKTKFGYHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSD 101
I + + N ++ Y G+ + E+L + +G+ V
Sbjct: 48 IPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKR 107
Query: 102 FCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI---------------KTVSEYFEF 146
++ + + + + + + T + K + E F
Sbjct: 108 PWITGDESIVGLMKDIVGANEK--EIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAF 165
Query: 147 NEGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFV 206
S Y ++ + G+ ++ + + + E E S ++ +
Sbjct: 166 P--SDHYAIESQLQLHGLN--IEESMRMIKPREGEETLRIEDILEVI--EKEGDSIAVIL 219
Query: 207 YPAESNFSGTKYPL-SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP 265
+ ++G + + + C+V D A G+ L L
Sbjct: 220 FSGVHFYTGQHFNIPAITKAGQAK------------GCYVGFDLAHAVGNVELYLHDWGV 267
Query: 266 DFISISFYK-MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMA---NENFHIKKDGL 321
DF YK + G+ + +K AH + G ++S + +
Sbjct: 268 DFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGV- 326
Query: 322 FEKFEDGTVNYLAIISL--------KYGFDTMEKKRKSFTNAFE 357
F L + SL + + KK T E
Sbjct: 327 -CGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLE 369
|
| >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW F+DA +L ++ P+ + FG+H+I +
Sbjct: 319 GDLGWATPDIFDPAFRDALTRLNKGQMS------APVHSSFGWHLIELLDT 363
|
| >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 6 GDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
G +GW + G F A + PI++ G+HI+ V
Sbjct: 209 GQMGWGRIQELPGIFAQALSTAKKGDIV------GPIRSGVGFHILKVNDL 253
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 52/228 (22%), Positives = 77/228 (33%), Gaps = 76/228 (33%)
Query: 245 VLLDAATYCGSNMLDLKQ---HQP--------DFISISFYKMFGYPTGLGALIVKQKSAH 293
VL+DA Q H P D++ S +KM PTG+G L K+
Sbjct: 202 VLVDAC-----------QSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKE---E 246
Query: 294 VLNKT--FYGGG----TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL--------K 339
+L F+GGG V + L KFE GT I+L
Sbjct: 247 ILEAMPPFFGGGEMIAEV--FFDHFTTG----ELPHKFEAGTPAIAEAIALGAAVDYLTD 300
Query: 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399
G + + EL+ Y + + L + LY + + +FN
Sbjct: 301 LGMENIHNYEV------ELTHYLW---QGLGQIPQ---LRLYGPNPKHGDR--AALASFN 346
Query: 400 L--LHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ---RFLGLS 442
+ LH S+V + + I +R+G HC Q R S
Sbjct: 347 VAGLHA-------SDVATMVDQDGIAIRSGHHC----TQPLHRLFDAS 383
|
| >3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 2 QCLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
L + + ++P+ + + P + K GY + V+ K
Sbjct: 158 TILKPQNASLNTSNADPRLLGLLSQIPVGSFS------PVLNGKNGYELYEVKSK 206
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 40/260 (15%), Positives = 77/260 (29%), Gaps = 74/260 (28%)
Query: 245 VLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGT 304
V++D + +LD+++ D ++++ + G P + V+N G+
Sbjct: 198 VVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PPIGAMVFRDP---SVMNSF----GS 249
Query: 305 VKISMANENFHIKKDGLFEKFEDGT------------VNYLAIISLKYGFDTMEKKRKSF 352
V + + E G + YLA + E+ S
Sbjct: 250 VSTNPYAT--------GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSM 301
Query: 353 TNAF----ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY 408
+A + Y L PLV L G + Q +V+F +
Sbjct: 302 QSADAYLNRVFDYLM---VSLR---SLPLVML-----IGRPEAQIPVVSFAV---HK-VP 346
Query: 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468
VQ LA+ + + LG++D+
Sbjct: 347 ADRVVQRLADNGILAIANTGSR----VLDVLGVNDV-----------------------G 379
Query: 469 GSIRISYGHASNWDDVKYFL 488
G++ + H S +V +
Sbjct: 380 GAVTVGLAHYSTMAEVDQLV 399
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 815 | |||
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.98 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.98 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.97 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.97 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.97 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.97 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.97 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.97 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.96 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.96 | |
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 99.96 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.96 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.96 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.95 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.95 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.95 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.95 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.95 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.95 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.94 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.94 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.94 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.94 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.94 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.94 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.94 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.94 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.93 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.93 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.93 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.93 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.93 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.93 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.93 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.93 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.93 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.93 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.92 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.92 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.92 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.92 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.92 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.92 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.92 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.92 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.92 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.92 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.92 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.92 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.92 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.92 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.92 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.92 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.92 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.91 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.91 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.91 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.91 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.91 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.91 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.91 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.91 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.91 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.91 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.91 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.91 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.91 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.91 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.91 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.91 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.91 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.91 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.91 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.91 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.91 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.91 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.91 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.9 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.9 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.9 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.9 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.9 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.9 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.9 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.9 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.9 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.9 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.9 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.9 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.9 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.9 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.9 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.9 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.9 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.9 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.9 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.9 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.9 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.89 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.89 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.89 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.89 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.89 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.89 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.89 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.89 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.89 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.89 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.89 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.89 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.89 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.89 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.89 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.89 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.88 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.88 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.88 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.88 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.88 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.88 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.88 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.88 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.88 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.88 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.88 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.87 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.87 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.87 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.87 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.87 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.87 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.87 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.87 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.87 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.87 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.87 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.87 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.87 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.87 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.86 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.86 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.86 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.86 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.86 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.86 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.86 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.86 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.85 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.85 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.85 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.85 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.84 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.84 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.84 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.84 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.83 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.83 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.83 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.83 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.83 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.83 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.83 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.82 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.71 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.82 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.82 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.82 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.82 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.82 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.81 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.81 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.81 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.81 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.81 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.81 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.81 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.8 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.8 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.8 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.79 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.79 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.79 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.79 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.79 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.79 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.78 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.78 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.78 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.77 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.76 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.76 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.75 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.75 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.75 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.74 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.74 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.74 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.73 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.72 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.72 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.71 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.71 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.71 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.71 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.71 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.7 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.7 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.67 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.67 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.67 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.67 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.67 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.66 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.66 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.64 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.58 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.55 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.49 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.04 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 99.34 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.34 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.31 | |
| 2lj4_A | 115 | Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; | 99.28 | |
| 3ui4_A | 101 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 99.28 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.17 | |
| 3i6c_A | 123 | Peptidyl-prolyl CIS-trans isomerase NIMA- interact | 99.12 | |
| 4g2p_A | 110 | Chaperone SURA; structural genomics, PSI-biology, | 99.12 | |
| 1jns_A | 92 | Peptidyl-prolyl CIS-trans isomerase C; alpha-beta | 99.1 | |
| 3gpk_A | 112 | PPIC-type peptidyl-prolyl CIS-trans isomerase; rot | 99.09 | |
| 2rqs_A | 97 | Parvulin-like peptidyl-prolyl isomerase; CIS/trans | 99.05 | |
| 1zk6_A | 93 | Foldase protein PRSA; alpha/beta structure, isomer | 99.01 | |
| 2kgj_A | 102 | Peptidyl-prolyl CIS-trans isomerase D; prolyl isom | 99.0 | |
| 2pv1_A | 103 | Chaperone SURA; surviVal protein A, peptidyl-proly | 99.0 | |
| 2jzv_A | 111 | Foldase protein PRSA; ppiase, parvulin, proline is | 98.98 | |
| 1j6y_A | 139 | Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN | 98.95 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.88 | |
| 3rfw_A | 252 | Cell-binding factor 2; SURA-like, chaperone; 2.20A | 98.62 | |
| 3rgc_A | 252 | Possible periplasmic protein; ppiase, chaperone; 2 | 98.44 | |
| 3nrk_A | 325 | LIC12922; NC domain, parvulin domain, SURA homolog | 98.31 | |
| 1m5y_A | 408 | SurviVal protein, surviVal protein SURA; surviVal | 98.07 | |
| 1m5y_A | 408 | SurviVal protein, surviVal protein SURA; surviVal | 97.95 | |
| 1o65_A | 246 | Hypothetical protein YIIM; structural genomics, un | 97.78 |
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=313.95 Aligned_cols=358 Identities=19% Similarity=0.259 Sum_probs=275.4
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++|||+++.+++++.+.+++.+.+.. .+.||+..+.........++++++++++++|+++++ +++|+|+++|+.+++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGT--VVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEE--EEEESSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHh-hcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCe--EEEECCchHHHHHHH
Confidence 37999999999999999999887754 466776653333333344889999999999998766 999999999999999
Q ss_pred hhhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++.+ ++|| |+++..+|+++......++..| .++++.++.++++++++++ .+++++|++++++||
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~np 150 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKL-------RDDTILVSVQHANNE 150 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHC-------CTTEEEEECCSBCTT
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHh-------ccCceEEEEECCCCC
Confidence 98864 7888 8899999999887666665556 4556655666777776644 467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+++|.++|+ ++|+ +|+|++|+.+..++++...++|++++|+||++| |.|+|+++++++.
T Consensus 151 tG~~~~~~~i~~l~~-----------~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~g~g~~~~~~~~-- 215 (382)
T 4hvk_A 151 IGTIQPVEEISEVLA-----------GKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA-- 215 (382)
T ss_dssp TCBBCCHHHHHHHHS-----------SSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTS-CTTCEEEEEETTC--
T ss_pred ceeeCCHHHHHHHHH-----------HcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcC-CCceEEEEEcCcc--
Confidence 999999999999999 8999 999999999988777766789999999999887 8899999999876
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
.+.+.+.++.. ..++..++++...+.++.++++.+......+ ++..++++++.+.|+++
T Consensus 216 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 275 (382)
T 4hvk_A 216 KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI--- 275 (382)
T ss_dssp CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred CcCcccccCCC-----------------cCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC---
Confidence 35454443322 2456788999999999988888765432333 88999999999999988
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~~ 447 (815)
|+++++.+.. ...++++.|.+++.+ ..++.+.|.++||.+++|..|..... ...+|++++.
T Consensus 276 ---~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~-- 341 (382)
T 4hvk_A 276 ---EESYLNGHPE----KRLPNNVNVRFSYIE-----GESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEE-- 341 (382)
T ss_dssp ---TTEEECSCSS----SBCTTEEEEEETTCC-----HHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHH--
T ss_pred ---CCeEEeCCcc----ccCCCEEEEEECCCC-----HHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhh--
Confidence 7899886642 233568888886433 34588889999999999988875431 1223433211
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|++++.+++++|+++++++|++++.+
T Consensus 342 -------------------~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 342 -------------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp -------------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1378999999999999999999999998754
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=302.42 Aligned_cols=358 Identities=19% Similarity=0.255 Sum_probs=268.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
++|||+++.++.++.+.+++.+.+.. .++|+++.+.........++++++++++++|+++++ +++|+|+++|+.+++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~ 77 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTE-SFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGT--VVFTSGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHT-SCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEE--EEEESSHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHh-ccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEcCchHHHHHHHH
Confidence 37999999999999999999887754 456776533222112233889999999999998765 999999999999999
Q ss_pred hhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++. .++|| |+++..+|+++......+...| .++++.++.++++.+++++ .+++++|++++++||
T Consensus 78 ~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~np 150 (382)
T 4eb5_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKL-------RDDTILVSVQHANNE 150 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHC-------CTTEEEEECCSBCTT
T ss_pred HHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHh-------cCCCeEEEEeccCCC
Confidence 9885 26788 8999999999877666554455 4555555556777766544 457899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.++|+++|.++|+ ++|++ |+|++++.|..++++..+++|++++|+||++| |+|+|+++++++.
T Consensus 151 tG~~~~l~~i~~l~~-----------~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g-~~g~G~~~~~~~~-- 215 (382)
T 4eb5_A 151 IGTIQPVEEISEVLA-----------GKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYG-PKGVGALWIRKEA-- 215 (382)
T ss_dssp TCBBCCHHHHHHHHT-----------TSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTC-CSSCEEEEEETTC--
T ss_pred ccccCCHHHHHHHHH-----------HCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcC-CCceEEEEEcccc--
Confidence 999999999999999 89999 99999998877666655578999999999988 8899999998874
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
.+.+.+.+++. ..++..++++...+.++.++++.+......+ ++..++++++.+.|+++
T Consensus 216 ~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 275 (382)
T 4eb5_A 216 KLQPVILGGGQ-----------------ENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKI--- 275 (382)
T ss_dssp CCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred ccCceecCCCc-----------------cccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC---
Confidence 23333332211 1245678889888888888888765422223 88899999999999887
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhhhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQRFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~~~g~~~~~~~ 447 (815)
|+++++.+.. ...++++.|.+++. +..++.+.|.++||.+++|..|.+.. ....+|+++.
T Consensus 276 ---~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~--- 340 (382)
T 4eb5_A 276 ---EESYLNGHPE----KRLPNNVNVRFSYI-----EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHE--- 340 (382)
T ss_dssp ---TTEEECSCSS----SBCTTEEEEEETTS-----CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHH---
T ss_pred ---CCeEEeCCcc----cCCCCEEEEEeCCc-----CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChh---
Confidence 7888876532 22367888887632 23458888888999999998765432 1111232210
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++.+
T Consensus 341 ------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 341 ------------------EAHGTLLLTLGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp ------------------HHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------ccCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999988643
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=300.93 Aligned_cols=346 Identities=14% Similarity=0.091 Sum_probs=257.1
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhHHH
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAIKT 139 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~ 139 (815)
-|+.+.+.++|++|++++.+.+.+ .++|+.+. ......+...++++|+.+++++|+++ .++|+| |+|+|+++++
T Consensus 15 ~~n~at~~~~p~~Vl~a~~~~~~~-~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a~n~ 92 (377)
T 3e77_A 15 TENLYFQSMLPHSVLLEIQKELLD-YKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPD-NYKVIFLQGGGCGQFSA 92 (377)
T ss_dssp CCCEECSCCCCHHHHHHHHHTSSS-GGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCT-TEEEEEESSHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHh-cccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CCeEEEEcCchHHHHHH
Confidence 467777889999999999887654 45666553 11122234449999999999999964 346999 5899999999
Q ss_pred HHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 140 VSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 140 ~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.++.. ++|| +++...+|.+. .|.+.+++.| +++++.+...+++.++. .++++|++|+++|.+|.
T Consensus 93 a~~~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~-------~i~~~t~lV~~~h~et~ 164 (377)
T 3e77_A 93 VPLNLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTW-------NLNPDASYVYYCANETV 164 (377)
T ss_dssp HHHHHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGC-------CCCTTCSCEEEESEETT
T ss_pred HHHhccCCCCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHh-------ccCCCccEEEEeCccCc
Confidence 9999973 2388 66666665543 6778888888 22444344445554433 34578999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|+ +++ ++|+++++|++|++|..|+|+++++ ++++|.||++| |+|+|++++++++++
T Consensus 165 tG~~~pi-----i~~-----------~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~g-p~G~g~l~~~~~~l~ 225 (377)
T 3e77_A 165 HGVEFDF-----IPD-----------VKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVG-SAGVTVVIVRDDLLG 225 (377)
T ss_dssp TTEECSS-----CCC-----------CTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTS-CTTCEEEEEETTSCS
T ss_pred hheEchh-----hhc-----------cCCCEEEEEcccccCCCCCchhhcC--EEEEecccccC-CCccEEEEEcHHHHh
Confidence 9999998 467 7899999999999999999998876 68899999997 999999999999987
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHHhcc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~~l~ 370 (815)
.+.+.... +.++... .....+.||+|+.+++++.++++++.+. |... +|.+++++++++.|+++
T Consensus 226 ~~~~~~p~---------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~- 292 (377)
T 3e77_A 226 FALRECPS---------VLEYKVQ---AGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNS- 292 (377)
T ss_dssp CCCTTSCG---------GGCHHHH---HTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred hccCCCCc---------hhhHHHH---hhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc-
Confidence 76543211 0111100 0123457899999999999999999887 4433 99999999999999998
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|++.+..... ..+.+.+++|++++.+. ..++ ..+.+.+.++||.++.|..+
T Consensus 293 -----~g~~~~~~~~---~~rs~~ivsf~~~~~~~~~~~~-~~~l~~l~~~Gi~~~~g~~~------------------- 344 (377)
T 3e77_A 293 -----QGFYVCPVEP---QNRSKMNIPFRIGNAKGDDALE-KRFLDKALELNMLSLKGHRS------------------- 344 (377)
T ss_dssp -----TTSEECCSCG---GGBCSSEEEEEESSTTCCHHHH-HHHHHHHHHTTEESCBCCTT-------------------
T ss_pred -----CCceecCCCH---HHcCCcEEEEEcCCCCCchhHH-HHHHHHHHHCCcEEeCCCCc-------------------
Confidence 6777643221 12334579999987554 2221 23566677899998876321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+|++.++|++||++|+++|+++...
T Consensus 345 ------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 345 ------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 256999999999999999999999998754
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-33 Score=304.58 Aligned_cols=344 Identities=13% Similarity=0.065 Sum_probs=243.1
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChh---hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhh
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNS---VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~---~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~a 136 (815)
.++||++++.+++|++|++++.+.+.+ .++||.+.+ .....+...++++|+.+++++|+++ .++|+| |+|+|++
T Consensus 26 ~~~yl~~agpt~~p~~V~~a~~~~~~~-~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~-~~evif~t~~~T~a 103 (386)
T 3qm2_A 26 AQVFNFSSGPAMLPAEVLKLAQQELCD-WHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPS-NYKVLFCHGGGRGQ 103 (386)
T ss_dssp -CCEECCSSSCCCCHHHHHHHTCC------------------------CCHHHHHHHHHHHTCCT-TEEEEEEESCTTHH
T ss_pred ccCccccCCCCCCCHHHHHHHHHHHHh-ccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-CceEEEEcCCchHH
Confidence 358999999999999999999776653 455666531 1122234449999999999999953 345999 6999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc---eEEcC--chhh-hcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ---IYSFS--VDDA-RNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g---~v~~~--~~~~-~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+++++.++. ++|| +++...++.+. .|...+++.| +++++ ..+. .+++.++. .++++|++|++++
T Consensus 104 ~n~ai~~l~-~~gd~v~~~~~~~~~~-~~~~~a~~~G~v~~v~~~~~~~G~~~~~~~~~~-------~l~~~t~lV~~~h 174 (386)
T 3qm2_A 104 FAGVPLNLL-GDKTTADYVDAGYWAA-SAIKEAKKYCAPQIIDAKITVDGKRAVKPMREW-------QLSDNAAYLHYCP 174 (386)
T ss_dssp HHHHHHHHC-TTCCEEEEEESSHHHH-HHHHHHTTTSEEEEEECEEEETTEEEECCGGGC-------CCCTTCSCEEECS
T ss_pred HHHHHHhcc-CCCCeEEEEeCCHHHH-HHHHHHHHhCCeEEEecCcccCCCCCCchHHHh-------hcCCCCcEEEEEC
Confidence 999999997 8888 65555544443 5666677766 56666 3443 56666554 3457899999999
Q ss_pred ccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 210 ESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 210 ~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
.+|.||.+ .|+++|. +|+++++|++|++|..|+|+++++ ++++|.|||+| |+|+|+|+++
T Consensus 175 ~et~tG~~i~pi~~i~----------------~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lG-P~G~g~l~v~ 235 (386)
T 3qm2_A 175 NETIDGIAIDETPDFG----------------PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIG-PAGLTLVIVR 235 (386)
T ss_dssp EETTTTEECCCCCCCC----------------TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTC-CTTEEEEEEE
T ss_pred CcCCcCEecCchhhhc----------------CCCEEEEEcccccCCCCCCccccC--EEEEecccccC-CCccEEEEEC
Confidence 99999996 8888873 379999999999999999998875 67799999998 9999999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFY 365 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~ 365 (815)
+++++.+.+..... .++. .........||+|+.+++++.++++++.+. |... ++..++++++++.
T Consensus 236 ~~~~~~~~~~~p~~---------~~~~---~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~ 303 (386)
T 3qm2_A 236 EDLLGKAHESCPSI---------LDYT---VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV 303 (386)
T ss_dssp GGGCSCCCTTSCGG---------GCHH---HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcH---------HHHH---HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99987776532110 0010 001123456899999999999999999887 4433 8999999999999
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
|+++ +.+....+. ..+.+.+++|.+++. .++ ..+.+.|.++||.++.|..|.
T Consensus 304 l~~~------~~~~~~~~~----~~rs~~iv~f~~~~~---~~~-~~~~~~L~~~gI~~~~g~~~~-------------- 355 (386)
T 3qm2_A 304 IDNS------DFYRNDVAQ----ANRSRMNVPFQLADN---TLD-KVFLEESFAAGLHALKGHRVV-------------- 355 (386)
T ss_dssp HHTC------SSEECCBCG----GGBCSSEEEEEESSG---GGH-HHHHHHHHHTTEECCBCCTTT--------------
T ss_pred HHHC------CCcccCCCH----HHcCceEEEEECCCc---ccc-HHHHHHHHHCCCEEeCCCCCc--------------
Confidence 9987 222322221 123457999999742 122 246667899999998775431
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+.+|+|++.++|++||++|+++|+++.+.
T Consensus 356 -----------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 356 -----------------------GGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp -----------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999997653
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=297.73 Aligned_cols=364 Identities=20% Similarity=0.264 Sum_probs=276.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-h----hhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCch
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-S----VLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~----~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t 134 (815)
+.+|||.+..++.++.+.+++.+.+.. ...|+++. + ..... ..++++++++++|. ++++ |++|+|+|
T Consensus 23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g~t 95 (406)
T 1kmj_A 23 PLAYLDSAASAQKPSQVIDAEAEFYRH-GYAAVHRGIHTLSAQATEK----MENVRKRASLFINARSAEE--LVFVRGTT 95 (406)
T ss_dssp ECEECCTTTCCCCCHHHHHHHHHHHHH-TCCCCSSCSSHHHHHHHHH----HHHHHHHHHHHTTCSCGGG--EEEESSHH
T ss_pred ceEEecCCccCCCCHHHHHHHHHHHHh-hcCCCCCCcchHHHHHHHH----HHHHHHHHHHHcCCCCCCe--EEEeCChh
Confidence 368999998888888898888776654 34456542 1 23344 88999999999998 5665 99999999
Q ss_pred hhHHHHHhhhc---cCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 135 SAIKTVSEYFE---FNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 135 ~al~~~~~al~---~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+|+.+++.++. .++|| |++...+|++... +...+...| .++.+.++.++++.+++++ .+++++|
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v 168 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLF-------DEKTRLL 168 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHC-------CTTEEEE
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHh-------ccCCeEE
Confidence 99999999992 38898 8999999988653 555555445 4455544456677766543 4679999
Q ss_pred EEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 206 VYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++++++||||.++|+++|.++|+ ++|+++|+|++++.|..++++...++|++++|+||+|| |+|+|++
T Consensus 169 ~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~G~G~~ 236 (406)
T 1kmj_A 169 AITHVSNVLGTENPLAEMITLAH-----------QHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGIL 236 (406)
T ss_dssp EEESBCTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEE
T ss_pred EEeCCCccccCcCCHHHHHHHHH-----------HcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccC-CCCcEEE
Confidence 99999999999999999999999 89999999999998877666655679999999999997 8889999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~ 363 (815)
++++++++.+++...+++.......... ..+...+.+++.|++++..++++.++++.+...+. . .++.+++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 314 (406)
T 1kmj_A 237 YVKEALLQEMPPWEGGGSMIATVSLSEG--TTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYAL 314 (406)
T ss_dssp EECHHHHHHCCCSSCSTTSEEEEETTTE--EEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred EEeHHHHhhcCCcccCCCceeecccccc--cccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 9999888888776666654332211100 01122345677889999999888888888764332 2 288889999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ |+++++.+. ..++++.|.+++. +..++.+.|.++||.+++|..|..+... .+|.
T Consensus 315 ~~L~~~------~~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~-~~g~-- 374 (406)
T 1kmj_A 315 SQLESV------PDLTLYGPQ------NRLGVIAFNLGKH-----HAYDVGSFLDNYGIAVRTGHHCAMPLMA-YYNV-- 374 (406)
T ss_dssp HHHTTS------TTEEEESCT------TCCSEEEEEETTC-----CHHHHHHHHHHTTEECEEECTTCHHHHH-HTTC--
T ss_pred HHHhcC------CCeEEecCC------CcCCEEEEEECCC-----CHHHHHHHHhhCCcEEEeccccchHHHH-hcCC--
Confidence 999887 688887652 1378888887532 3345788899999999999888754321 1121
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++.++|++|+++++++|++++.
T Consensus 375 ------------------------~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 403 (406)
T 1kmj_A 375 ------------------------PAMCRASLAMYNTHEEVDRLVTGLQRIHR 403 (406)
T ss_dssp ------------------------SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCeEEEEeecCCCHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998764
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=300.40 Aligned_cols=369 Identities=20% Similarity=0.251 Sum_probs=278.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhh-ccccCCCC-hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKE-NIFSHPHG-NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~-~~~~np~s-~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
+.+..+..+|||+++.++.++.+.+++.+.+.. ..+++|++ .+.........++++++++++++|+++++ |++|+|
T Consensus 16 ~~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~--v~~~~g 93 (423)
T 3lvm_A 16 VYRAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE--IVFTSG 93 (423)
T ss_dssp ----CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EEEESS
T ss_pred cccccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCe--EEEeCC
Confidence 445566789999999999999999988776541 34667766 32222222334889999999999998877 999999
Q ss_pred chhhHHHHHhhhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 133 ATSAIKTVSEYFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 133 ~t~al~~~~~al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+++|+.+++.++.. ++|| |+++..+|+++......+...| .++++.++.++++.+++++ .+++++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~ 166 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM-------RDDTIL 166 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHC-------CTTEEE
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhc-------CCCcEE
Confidence 99999999998862 3788 8888999999877665554445 4555665666777776644 467999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceE
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGA 284 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~ 284 (815)
|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+..++++...++|++++|+||++| |.|+|+
T Consensus 167 v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g-~~g~G~ 234 (423)
T 3lvm_A 167 VSIMHVNNEIGVVQDIAAIGEMCR-----------ARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGA 234 (423)
T ss_dssp EECCSBCTTTCBBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTS-CSSCEE
T ss_pred EEEeCCCCCCccccCHHHHHHHHH-----------HcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcC-CCCeEE
Confidence 999999999999999999999999 89999999999999888888888889999999999888 778999
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTY 363 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~ 363 (815)
++++++..+.+.+...+++. ...+..++++...+.++.++++.+....... ++.+++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 297 (423)
T 3lvm_A 235 LYVRRKPRVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLW 297 (423)
T ss_dssp EEECBTTBCCCCCSSCSSCT-----------------TTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCccccCCcc-----------------cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887777665544332 1246678899999999988888776542333 88999999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhh
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRF 438 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~ 438 (815)
+.|+++ |+++++.+.. ...++++.|.+.+.+ ..++.+.|.+ |.+++|.+|.+... ...
T Consensus 298 ~~L~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~ 360 (423)
T 3lvm_A 298 NGIKDI------EEVYLNGDLE----HGAPNILNVSFNYVE-----GESLIMALKD--LAVSSGSACTSASLEPSYVLRA 360 (423)
T ss_dssp HHHTTS------TTEEEESCST----TBCTTEEEEEETTSC-----HHHHHHHTTT--EECBCCCC-----CCCCHHHHH
T ss_pred HHHhcC------CCEEEeCCcc----ccCCCeEEEEeCCCC-----HHHHHHHHhh--heeccCccccCCCccccHHHHH
Confidence 999888 7899887643 234578888884432 3357777766 99999988876432 122
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
+|++.. ...+++|++++..++++|+++++++|++++..-.
T Consensus 361 ~g~~~~---------------------~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~ 400 (423)
T 3lvm_A 361 LGLNDE---------------------LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLR 400 (423)
T ss_dssp HTCCHH---------------------HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcc---------------------ccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 333221 1137899999999999999999999999876543
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-31 Score=291.42 Aligned_cols=357 Identities=18% Similarity=0.220 Sum_probs=260.1
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
+|||+++.+..++.+.+++.+.+.. .+.+|++.+...........++++++++++|+++++ |++|+|+|+|+.+++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYRE-KYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE--IFFTSCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHT-CCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG--EEEESCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHh-cCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCe--EEEECCHHHHHHHHHH
Confidence 7999999999999999999887654 455665432111111223789999999999998776 9999999999999999
Q ss_pred hhcc---CCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 143 YFEF---NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 143 al~~---~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.. ++|| |+++..+|+++......+...| .++.+.++.++++.+++++ .+++++|++++++|||
T Consensus 80 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~~npt 152 (384)
T 1eg5_A 80 TVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLV-------DEDTFLVSIMAANNEV 152 (384)
T ss_dssp HHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHC-------CTTEEEEEEESBCTTT
T ss_pred hhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHh-------CCCCeEEEEECCCCCc
Confidence 9873 6888 8899999998876665444455 3444444456666666543 4579999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCC--eEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSN--CFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~g--i~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
|.++|+++|.++|+ ++| +++|+|++++.+..++++..+++|++++|+||++| |+|+|++++++++
T Consensus 153 G~~~~~~~i~~l~~-----------~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g-~~G~G~~~~~~~~- 219 (384)
T 1eg5_A 153 GTIQPVEDVTRIVK-----------KKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKGV- 219 (384)
T ss_dssp CBBCCHHHHHHHHH-----------HHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTS-CTTCEEEEECTTS-
T ss_pred ccccCHHHHHHHHH-----------hcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcC-CCceEEEEEcCCC-
Confidence 99999999999999 788 99999999998877777776789999999999988 8789999999875
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
.+.+.+.+++. ..++..++++...+.++.++++.+....... ++..++++++.+.|++.
T Consensus 220 -~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 279 (384)
T 1eg5_A 220 -PIRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL-- 279 (384)
T ss_dssp -CCCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred -ccccccccCcc-----------------cccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC--
Confidence 23333222111 1234567889999988888888754332233 88889999999999874
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHH
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITI 446 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~ 446 (815)
+++++.+.. ...+.++.|.+++. +..++.+.|.++||.+++|..|.+... ...+|++..
T Consensus 280 -----g~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~-- 343 (384)
T 1eg5_A 280 -----GAHIITPLE----ISLPNTLSVSFPNI-----RGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRR-- 343 (384)
T ss_dssp -----TCEECSCTT----SBCTTEEEEECTTC-----CHHHHHHHHHHTTEECBC------------CHHHHTTCCHH--
T ss_pred -----CeEEeCCcc----cCCCCEEEEEeCCC-----CHHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChh--
Confidence 677775532 12356788877642 234688888999999999877654321 111222110
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++||+++.+++++|+++++++|++++.+
T Consensus 344 -------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 344 -------------------IAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp -------------------HHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------hcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999998753
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=297.36 Aligned_cols=360 Identities=13% Similarity=0.116 Sum_probs=268.9
Q ss_pred ccccccch-hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 54 EGKNHLKD-ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 54 ed~~~~~~-~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++|+..+. .+|||+++.+..++.+.+++.+.+.. ...||++.+.........++++++++++++|+++++ |++|+|
T Consensus 18 ~~fp~~~~~~~~ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v~~~~g 94 (406)
T 3cai_A 18 GLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRR-SGASTVGAHPSARRSAAVLDAAREAVADLVNADPGG--VVLGAD 94 (406)
T ss_dssp HTCTTTTSSCEECBGGGCCCCCHHHHHHHHHHHHH-CCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EEEESC
T ss_pred HhhhhcCCCeEEEeCCCcCCCCHHHHHHHHHHHHh-cCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCe--EEEeCC
Confidence 46666654 89999999998899999998877653 334554433322112233889999999999998776 999999
Q ss_pred chhhHHHHHhhh--ccCCCc-EEEecCCCcchhhHHH-Hhhccc----eEEcC-chhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 133 ATSAIKTVSEYF--EFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ----IYSFS-VDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 133 ~t~al~~~~~al--~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g----~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
+|+++.+++.++ ..++|| |+++..+|+++..... .+...| .++++ .++.++++.+++++ +++++
T Consensus 95 ~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l-------~~~~~ 167 (406)
T 3cai_A 95 RAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLI-------SKSTR 167 (406)
T ss_dssp HHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHC-------CTTEE
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHh-------CCCce
Confidence 999999999887 238898 8899999998765433 333334 45555 34456777766543 46799
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcce
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G 283 (815)
+|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++| |. +|
T Consensus 168 ~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g-~~-~G 234 (406)
T 3cai_A 168 LVAVNSASGTLGGVTDLRAMTKLVH-----------DVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGG-PP-IG 234 (406)
T ss_dssp EEEEESBCTTTCBBCCCHHHHHHHH-----------HTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTS-CS-CE
T ss_pred EEEEeCCcCCccccCCHHHHHHHHH-----------HcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcC-CC-cC
Confidence 9999999999999999999999999 89999999999998887777666689999999999988 74 88
Q ss_pred -EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-------------
Q psy16512 284 -ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR------------- 349 (815)
Q Consensus 284 -~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~------------- 349 (815)
++++++++++.+++.....+. ..+.++..||++...+.++.++++++...+
T Consensus 235 ~~~~~~~~~~~~l~~~~~~~~~---------------~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~ 299 (406)
T 3cai_A 235 AMVFRDPSVMNSFGSVSTNPYA---------------TGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAV 299 (406)
T ss_dssp EEEESCHHHHHTSCCCCSCTTC---------------CGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHH
T ss_pred eEEEEehHHHhhcCCcccCCCC---------------CccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhh
Confidence 999998887766554211110 013456788999999999989998887643
Q ss_pred --hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 350 --KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 350 --~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
..+ ++..++++++.+.|+++ |+++++.+.. ..+++++|.+++. +..++.+.|.++||.++.
T Consensus 300 ~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~L~~~gi~v~~ 363 (406)
T 3cai_A 300 SMQSADAYLNRVFDYLMVSLRSL------PLVMLIGRPE-----AQIPVVSFAVHKV-----PADRVVQRLADNGILAIA 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC------TTEEECCCCS-----SBCSEEEEEETTB-----CHHHHHHHHHHTTEECEE
T ss_pred hHHHHHHHHHHHHHHHHHHHhcC------CCeEEcCCcc-----ccCCEEEEEECCc-----CHHHHHHHHHHCCcEEec
Confidence 222 88889999999999987 7888876532 2356888887642 234588888889999998
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
|+ +......+|.+. ..+++|+|++.+++++|+++++++|++
T Consensus 364 g~---~~~~~~~~g~~~-----------------------~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 364 NT---GSRVLDVLGVND-----------------------VGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CC---SCHHHHHHTTTT-----------------------TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CC---hHHHHHHcCCCC-----------------------CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 76 111111222210 137899999999999999999999975
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-31 Score=297.72 Aligned_cols=361 Identities=20% Similarity=0.208 Sum_probs=255.1
Q ss_pred ccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhH
Q psy16512 58 HLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 58 ~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al 137 (815)
..+..+|||+++.++.++.+.+++.+.+.. .+.||++.+.........++++++++++++|+++++ |++|+|+++|+
T Consensus 17 ~~~~~iyld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~--v~~~~g~t~al 93 (400)
T 3vax_A 17 RGSHMTYLDAAATTRVDQRVADIVLHWMTA-EFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDE--LIFTSGATESN 93 (400)
T ss_dssp -----CCCCCCCCSSSCHHHHHHHHHHHHH-HHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGG--EEEESCHHHHH
T ss_pred ccCCcEEecCCCCCCCCHHHHHHHHHHHHh-ccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCc--EEEeCCHHHHH
Confidence 445689999999999999999998887654 356776643332222344889999999999998876 99999999999
Q ss_pred HHHHhhhc---cCCCc--EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 138 KTVSEYFE---FNEGS--FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 138 ~~~~~al~---~~~gd--vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
.+++.++. .++|| |+++..+|+++......+...| .++++.++.++++++++++ ++++++|+++
T Consensus 94 ~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~ 166 (400)
T 3vax_A 94 NIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERL-------RPDTLLVSLM 166 (400)
T ss_dssp HHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTC-------CTTEEEEECC
T ss_pred HHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhc-------CCCceEEEEE
Confidence 99999884 15676 7777889999877666655555 4555665666777776644 4679999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEE-E
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI-V 287 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~-~ 287 (815)
+++||||.+.|+++|.++|+ ++|+++|+|++++.+..+.++... +|++++|+||++| |.|+|+++ +
T Consensus 167 ~~~nptG~~~~l~~i~~la~-----------~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g-~~g~g~~~~~ 233 (400)
T 3vax_A 167 HVNNETGVIQPVAELAQQLR-----------ATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGA-PKGVGALVTR 233 (400)
T ss_dssp SBCTTTCBBCCHHHHHHHHT-----------TSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTS-CSSCEEEEEC
T ss_pred CCCCCceeeCcHHHHHHHHH-----------hcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCC-CCceEEEEEe
Confidence 99999999999999999999 899999999999998887777767 9999999999877 88999999 8
Q ss_pred ecccc----cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHH
Q psy16512 288 KQKSA----HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYT 362 (815)
Q Consensus 288 ~~~~~----~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l 362 (815)
+++.+ +.+.+.+.++.. ..++..++++...+.++.++++.+......+ ++..++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 296 (400)
T 3vax_A 234 RREEMDDERVPLEPIMFGGGQ-----------------ERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRL 296 (400)
T ss_dssp BCSSSTTCBCCCCCSSCSSCT-----------------GGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cchhccccccccCceecCCCc-----------------eeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 87322 123333332211 2356788999999999989988766532333 8889999999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh-----hhh
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS-----CQR 437 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~-----~~~ 437 (815)
.+.|+ . ++++++.+.. ...++++.|.+++.+ ..++.+.|. +||.+++|..|.+.. ...
T Consensus 297 ~~~L~-~------~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~ 359 (400)
T 3vax_A 297 LAGLA-S------TSFQVNGDQD----HVVPHILNLSFEDVD-----AEAFLVTLK-DLVAVATGSASTSASFTPSHVLR 359 (400)
T ss_dssp HHHHT-T------TTCEECSCTT----SBCTTEEEEECTTCC-----HHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHH
T ss_pred HHhhC-C------CCEEEeCCcc----cCCCCEEEEEeCCCC-----HHHHHHHHh-cCcEEEecccccCCCCCccHHHH
Confidence 99998 6 6888887653 234578888876433 345888888 999999998776532 222
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+|+++.. ..+++|+++ +.+++++|+++++++|++++.
T Consensus 360 ~~g~~~~~---------------------~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 360 AMGLPEEA---------------------ASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp TTTCCHHH---------------------HTSEEEEEEEEC-------------------
T ss_pred HcCCCccc---------------------cCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 33433211 138999999 999999999999999998764
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-31 Score=302.77 Aligned_cols=367 Identities=12% Similarity=0.142 Sum_probs=270.9
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccc--cCCCC--hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIF--SHPHG--NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~--~np~s--~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
..+|||.++.++.++.+.+++.+.+..... .+.+. ....... .+++++++++++|+++++ |++|+|+|++
T Consensus 67 ~~iyld~~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLGNSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITG----DESIVGLMKDIVGANEKE--IALMNALTVN 140 (465)
T ss_dssp BCEECBTTTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGT----THHHHGGGHHHHTCCGGG--EEECSCHHHH
T ss_pred CeEEecCCccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHh----HHHHHHHHHHHcCCCcCC--EEEECCHHHH
Confidence 578999999998888887766555432110 01111 0122333 678999999999999877 9999999999
Q ss_pred HHHHHhhhccCCC---c-EEEecCCCcchhh-HHHHhhccc--e----E---EcCchhhhcchhhhhhhhhhhhhcCCCc
Q psy16512 137 IKTVSEYFEFNEG---S-FIYLTDNHTSVLG-MRELVKTNQ--I----Y---SFSVDDARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 137 l~~~~~al~~~~g---d-vv~~~~~h~s~~~-~~~~~~~~g--~----v---~~~~~~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
+.+++.++. ++| + ||+...+|++... +...++..| . + +.+.++.+++++++++|+ ...+++
T Consensus 141 l~~~~~~~~-~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~----~~~~~~ 215 (465)
T 3e9k_A 141 LHLLMLSFF-KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIE----KEGDSI 215 (465)
T ss_dssp HHHHHHHHC-CCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHH----HHGGGE
T ss_pred HHHHHHHhc-cccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHH----hcCCCe
Confidence 999999996 444 4 8999999998655 444555555 1 2 233344567777776553 112479
Q ss_pred cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccc-ccCCc
Q psy16512 203 SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMF-GYPTG 281 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~-g~p~G 281 (815)
++|++++++|+||.+.|+++|.++|+ ++|+++++|++|+.|..++++..+++|++++|+||++ ++|.|
T Consensus 216 ~lv~~~~~~n~tG~~~~l~~i~~la~-----------~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~ 284 (465)
T 3e9k_A 216 AVILFSGVHFYTGQHFNIPAITKAGQ-----------AKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGG 284 (465)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTC
T ss_pred EEEEEeCcccCcceeecHHHHHHHHH-----------HcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCc
Confidence 99999999999999999999999999 8999999999999999998888889999999999999 35878
Q ss_pred ceEEEEecccccccCcccccCceEEEEecCC-cccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-H-HHHHHH
Q psy16512 282 LGALIVKQKSAHVLNKTFYGGGTVKISMANE-NFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-F-TNAFEL 358 (815)
Q Consensus 282 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~-~~~~~l 358 (815)
+|+++++++..+.+.+...|+........+. .....+.....+++.||++..+++++.++++.+...+.. + ++..++
T Consensus 285 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~ 364 (465)
T 3e9k_A 285 IAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLL 364 (465)
T ss_dssp CCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred eEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999998887776655532211000000 000112345678999999999999999999998876422 2 889999
Q ss_pred HHHHHHHHHhcc----ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 359 SQYTYFYFKQLS----YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 359 ~~~l~~~L~~l~----~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
++++.+.|+++. ..++.++++++.+.. ...++++++|.++ .+... +.+.|.++||.++.+
T Consensus 365 ~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~---~~~~g~~~~~~~~-~~~~~-----l~~~L~~~Gi~v~~~------- 428 (465)
T 3e9k_A 365 TGYLEYLIKHNYGKDKAATKKPVVNIITPSH---VEERGCQLTITFS-VPNKD-----VFQELEKRGVVCDKR------- 428 (465)
T ss_dssp HHHHHHHHHHHCC---------CEEECSCSS---GGGBCSCEEEEEC-CTTCC-----HHHHHHTTTEECEEE-------
T ss_pred HHHHHHHHHhhccccccccCCCCeEEeCCCC---HhhcccEEEEEec-CCHHH-----HHHHHHHCCEEEecC-------
Confidence 999999998741 111224789987653 2345889999887 33333 788888899998621
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++||+|+ +.+++++||++++++|++++.+
T Consensus 429 --------------------------------~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 429 --------------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp --------------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred --------------------------------CCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 037899999 8999999999999999998754
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=290.33 Aligned_cols=369 Identities=21% Similarity=0.282 Sum_probs=273.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~~ 139 (815)
.+||+.+..+..++.+.+++.+.+.. ...++++. ............++++.+++++|. ++++ +++|+|+|+|+.+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~--v~~~~g~t~a~~~ 105 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYEN-DNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPRE--IVYTRNATEAINL 105 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHH-TCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGG--EEEESSHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHh-ccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCe--EEEcCChHHHHHH
Confidence 68999988888888888888776653 34455531 111111122378999999999998 6666 9999999999999
Q ss_pred HHhhh----ccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 140 VSEYF----EFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 140 ~~~al----~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
++.++ . ++|| |+++..+|++... +...+...| .++++.++.++++.+++++ .+++++|++++
T Consensus 106 ~~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~ 177 (420)
T 1t3i_A 106 VAYSWGMNNL-KAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLL-------SEKTKLVTVVH 177 (420)
T ss_dssp HHHHTHHHHC-CTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHC-------CTTEEEEEEES
T ss_pred HHHHhhhccc-CCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhh-------CCCceEEEEeC
Confidence 99999 5 8898 8899999988643 344444444 4555544456677766543 46799999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++| |.|+|++++++
T Consensus 178 ~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~-~~g~G~~~~~~ 245 (420)
T 1t3i_A 178 ISNTLGCVNPAEEIAQLAH-----------QAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKE 245 (420)
T ss_dssp BCTTTCBBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECH
T ss_pred CcccccCcCCHHHHHHHHH-----------HcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcC-CCceEEEEEch
Confidence 9999999999999999999 89999999999998877666666679999999999887 77899999999
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFK 367 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~ 367 (815)
++++.+++...+++........ .+ .+...+.++..|++++...+++.++++++...+. . .++..++++++.+.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 246 EILEAMPPFFGGGEMIAEVFFD-HF--TTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp HHHHHSCCCSCSTTSEEEECSS-CE--EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCceecCCCcccccccc-cc--CCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777666555543322111 00 1123345677789999888888878888765332 2 2888999999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCC-cccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESK-YQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~-~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ ++++++.+.. .. ..++++.|.+++ .+..++.+.|.++||.+++|..|..+... .+|.
T Consensus 323 ~~------~g~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~~~~~~~~~~-~~g~----- 382 (420)
T 1t3i_A 323 QI------PQLRLYGPNP---KHGDRAALASFNVAG-----LHASDVATMVDQDGIAIRSGHHCTQPLHR-LFDA----- 382 (420)
T ss_dssp TC------TTEEEESCCG---GGSCBCSEEEEEETT-----BCHHHHHHHHHTTTEECBCSCTTCHHHHH-HTTC-----
T ss_pred hC------CCeEEeCCCc---cccccCCEEEEEECC-----CCHHHHHHHHHHCCeEEeeccccchHHHH-hcCC-----
Confidence 87 6888886531 00 247888888753 23346888899999999999887654221 1111
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++.+++++|+++++++|++++..
T Consensus 383 ---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 383 ---------------------SGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp ---------------------CCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999997643
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=282.97 Aligned_cols=364 Identities=18% Similarity=0.251 Sum_probs=269.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh--hh-hhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--SV-LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--~~-~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
+|+...+.+||+.+..++.++.+.+++.+.+......++.+. +. .... ..++++.+++++|+++++ |++|+
T Consensus 10 ~f~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~----~~~l~~~la~~~g~~~~~--v~~~~ 83 (390)
T 1elu_A 10 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQL----IAQLRQALAETFNVDPNT--ITITD 83 (390)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHH----HHHHHHHHHHHTTSCGGG--EEEES
T ss_pred hcCCCCCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHH----HHHHHHHHHHHcCCCHHH--EEEeC
Confidence 445455679999998888888899988877654322334321 11 1234 889999999999998876 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcC--chhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFS--VDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
|+++|+.+++.++..++|| |+++..+|+++.. +...+...| .++.+ .+...+++.+++++ .++++
T Consensus 84 g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i-------~~~~~ 156 (390)
T 1elu_A 84 NVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL-------GPKTR 156 (390)
T ss_dssp SHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC-------CTTEE
T ss_pred ChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhc-------CCCce
Confidence 9999999999999338898 9999999988764 334444444 34443 23345666665533 46799
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcce
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLG 283 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G 283 (815)
+|++++++||||.++|+++|.++|++. ++++|+++|+|++++.|..++++...++|+++.|+||++++|.|+|
T Consensus 157 ~v~~~~~~nptG~~~~~~~i~~l~~~~-------~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G 229 (390)
T 1elu_A 157 LVILSHLLWNTGQVLPLAEIMAVCRRH-------QGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVG 229 (390)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHC-------CSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCE
T ss_pred EEEEeccccCCceecCHHHHHHHHhhh-------hhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceE
Confidence 999999999999999999999999710 0158999999999999988888777789999999999655588999
Q ss_pred EEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--h-hHHHHHHHHH
Q psy16512 284 ALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--K-SFTNAFELSQ 360 (815)
Q Consensus 284 ~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~-~~~~~~~l~~ 360 (815)
++++++++++.+.+...+++..........+. ......++..|+++...+.++.++++.+...+ . ..++.+++++
T Consensus 230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~ 307 (390)
T 1elu_A 230 GLYIHGDCLGEINPTYVGWRSITYGAKGEPTG--WAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSE 307 (390)
T ss_dssp EEEECTTTGGGCCCCSCCTTTEEECTTSCEEE--ECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEEECHHhHhhcCCccccCCcccccccCcccc--cccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999998888877666655433211111110 11223466778999999998888998876643 1 2288899999
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
++.+.|+++ ++++++.+. ...++++.|.++.. .+..++.+.|.++||.+++|..
T Consensus 308 ~l~~~L~~~------~g~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~----------- 361 (390)
T 1elu_A 308 FLWRGLNQL------PHVHCLATS-----APQAGLVSFTVDSP----LGHRAIVQKLEEQRIYLRTIAD----------- 361 (390)
T ss_dssp HHHHHHHHS------TTEEESCSS-----CCSSSEEEEEECSS----SCHHHHHHHHHHTTEECEEETT-----------
T ss_pred HHHHHHHhc------CCcEEecCc-----cccccEEEEEcCCC----CCHHHHHHHHHHCCEEEEecCC-----------
Confidence 999999987 688888642 13478888887521 2334688888899999987530
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+++|||++.+++++|+++++++|++
T Consensus 362 ---------------------------~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 362 ---------------------------PDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp ---------------------------TTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred ---------------------------CCeEEEecccCCCHHHHHHHHHHHHh
Confidence 27899999999999999999999875
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=287.86 Aligned_cols=375 Identities=20% Similarity=0.242 Sum_probs=261.1
Q ss_pred cceeeeccccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeE
Q psy16512 48 YHIIMVEGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSV 127 (815)
Q Consensus 48 yhIi~ved~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~i 127 (815)
.++.+.++|+..++.+|||+++.+..++.+.+++.+.+.. .+.+|++.+.........++++++++++++|+++++ |
T Consensus 5 ~~~~~~~~~~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~--v 81 (432)
T 3a9z_A 5 RNGARGSVESPPNRKVYMDYNATTPLEPEVIQAVTEAMKE-AWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQD--I 81 (432)
T ss_dssp -------------CCEECBTTTCCCCCHHHHHHHHHHHHH-CCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGG--E
T ss_pred cccccccccCCCCCcEEeeCCccCCCCHHHHHHHHHHHHH-hcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCe--E
Confidence 3556677888888899999999888899999998887654 456676543322222233789999999999998776 9
Q ss_pred EecCCchhhHHHHHhhhcc-------CCC-------------c-EEEecCCCcchhh-HHHHhhccc----eEEcCc-hh
Q psy16512 128 IFTSGATSAIKTVSEYFEF-------NEG-------------S-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSV-DD 180 (815)
Q Consensus 128 v~t~g~t~al~~~~~al~~-------~~g-------------d-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~-~~ 180 (815)
++|+|+|+|+.+++.++.. ++| + ++++..+|+++.. +..++...| .++++. ++
T Consensus 82 ~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~ 161 (432)
T 3a9z_A 82 IFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG 161 (432)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS
T ss_pred EEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC
Confidence 9999999999999988741 356 3 6667777887655 334444445 445543 44
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC----------eEEEEecc
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN----------CFVLLDAA 250 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g----------i~vivD~a 250 (815)
.++++.+++++ ++++++|++++++||||.++|+++|.++|+ +++ +++|+|++
T Consensus 162 ~~d~~~l~~~i-------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~-----------~~~~~~~~~~~~~~~livDea 223 (432)
T 3a9z_A 162 QVEVEDILAAV-------RPTTCLVTIMLANNETGVIMPISEISRRIK-----------ALNQIRAASGLPRVLVHTDAA 223 (432)
T ss_dssp SCCHHHHHHTC-------CTTEEEEECCSBCTTTCBBCCHHHHHHHHH-----------HHHHHHHHHTCCCCEEEEECT
T ss_pred CcCHHHHHHhc-------cCCceEEEEECcccCcccccCHHHHHHHHH-----------hcCcccccccCCceEEEEEch
Confidence 46666666533 467999999999999999999999999999 777 99999999
Q ss_pred cccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 251 TYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 251 ~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
++.+..++++...++|+++.|+||++| |. +|+++++++. ...+.+.+++++. ..++..|+
T Consensus 224 ~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~-~G~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 284 (432)
T 3a9z_A 224 QALGKRRVDVEDLGVDFLTIVGHKFYG-PR-IGALYVRGVGKLTPLYPMLFGGGQ-----------------ERNFRPGT 284 (432)
T ss_dssp TTTTTSCCCHHHHCCSEEEEEGGGTTC-CS-CEEEEETTBTTTBCCCCSCCSSCG-----------------GGGTSCSC
T ss_pred hhhCCcccChhhcCCCEEEEehhHhcC-Cc-ceEEEEccccccCCcCceeecCCc-----------------cccccCCC
Confidence 998877766655679999999999998 86 9999999876 4455555544432 23567789
Q ss_pred CChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCc--EEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPL--VELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~--~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
++..++.++.++++.+......+ ++..++++++.+.|+++ ++ +.+..+.. .....+++++|.+.+...
T Consensus 285 ~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~- 355 (432)
T 3a9z_A 285 ENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAE------FGKRIHLNSRFP--GVERLPNTCNFSIQGSQL- 355 (432)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HGGGEEESSCCT--TCCBCTTEEEEEECSTTC-
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc------cCCcEEEeCCCC--cccCCCCEEEEEeCCCCC-
Confidence 99999999988998766532233 88899999999999885 33 44444311 012345688888875321
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhh------hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSC------QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~------~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
+...+.+.+ .+|.++.|..|.+... ...+|+... ...+++|||++.++|
T Consensus 356 --~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~---------------------~~~~~iRis~~~~~t 410 (432)
T 3a9z_A 356 --RGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVD---------------------VARNAVRLSVGRSTT 410 (432)
T ss_dssp --CHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH---------------------HHTTEEEEECCTTCC
T ss_pred --cHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCcc---------------------ccCceEEEEcCCCCC
Confidence 122344444 4899998888765321 111232210 013789999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy16512 481 WDDVKYFLSFLNQYFL 496 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~ 496 (815)
++|+++++++|++++.
T Consensus 411 ~eei~~~~~~l~~~~~ 426 (432)
T 3a9z_A 411 RAEVDLIVQDLKQAVN 426 (432)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=282.90 Aligned_cols=340 Identities=13% Similarity=0.068 Sum_probs=248.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhh---hhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVL---SDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~---~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al 137 (815)
+.|+-+++.+++|++|++++.+.+.+ .++||.+.++. ...+...++++|+.+++++|++++ ++|+| |+|+|+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~-~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~-~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCD-YQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDD-YEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSS-GGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTT-EEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHh-cccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCcHHHHH
Confidence 45677788999999999999887654 45676654211 112334499999999999999643 35888 99999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh--hcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++++.++. +|| +++....+.+ ..|...+++.| +++++.++. .+++. + | +++|++|+++|.
T Consensus 83 n~~~~~~~--~~~~~~~i~~~~~~-~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l-------~~~t~lv~~~~~ 149 (361)
T 3m5u_A 83 AMIPMNLA--LNGVCEYANTGVWT-KKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-F-------SDNADYAYICSN 149 (361)
T ss_dssp HHHHHHHC--CSSCEEEEECSHHH-HHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-C-------CTTSSEEEEESE
T ss_pred HHHHHhcC--CCCeEEEEeCCHHH-HHHHHHHHHcCCceEEEecccCcCCCcCChh--h-c-------CCCCCEEEEeCC
Confidence 99999987 565 3222221111 24566666666 667776653 34443 2 4 367999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|.||.+.|. +++ . |+++++|++|++|..++|++. .|++++|.||++| |+|+|+|+++++
T Consensus 150 e~~tG~~~~~-----i~~-----------~-~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~g-p~G~g~l~~~~~ 209 (361)
T 3m5u_A 150 NTIYGTQYQN-----YPK-----------T-KTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAG-ISGLSCIFIRKD 209 (361)
T ss_dssp ETTTTEECSS-----CCC-----------C-SSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSS-CTTCEEEEEEHH
T ss_pred CCCcceeCCc-----ccc-----------c-CCEEEEEcccccCCCCCCccc--CCEEEEechhccC-CCccEEEEEcHH
Confidence 9999999873 455 4 999999999999999999975 6999999999998 999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH--HHHHHHHHHHHHHHH
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF--TNAFELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~--~~~~~l~~~l~~~L~ 367 (815)
+++.+.+.+... ..++... .......||+|+.+++++.++++++.+. |... +|..++++++++.|+
T Consensus 210 ~~~~~~~~~~p~--------~~~~~~~---~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~ 278 (361)
T 3m5u_A 210 MLERSKNKQIPS--------MLNYLTH---AENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECID 278 (361)
T ss_dssp HHHHHHTCCCCG--------GGCHHHH---HHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCCCc--------eeehHHH---hhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence 887665421110 0001000 0123456899999999999999999987 5443 999999999999999
Q ss_pred hccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ +++ +++.+.. .+.+.+++|.+++..+ ++ ..+...|.++||.++.|..+
T Consensus 279 ~~------~g~~~~~~~~~----~rs~~ivsf~~~~~~~--~~-~~~~~~L~~~gI~~~~g~~~---------------- 329 (361)
T 3m5u_A 279 LS------NGFYKGHADKK----DRSLMNVSFNIAKNKD--LE-PLFVKEAEEAGMIGLKGHRI---------------- 329 (361)
T ss_dssp TS------TTSEEESSCGG----GBCSSEEEEEESSCTT--HH-HHHHHHHHHTTEECCBCCTT----------------
T ss_pred HC------CCeeeccCCHH----HcCCeEEEEECCCchh--hh-HHHHHHHHHCCCEEecCCCc----------------
Confidence 98 544 6654321 2346799999985211 22 24678889999998876431
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+.+|+|++.++|++||++++++|+++.+.
T Consensus 330 ---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 330 ---------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp ---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 145999999999999999999999997654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-30 Score=280.38 Aligned_cols=350 Identities=14% Similarity=0.113 Sum_probs=257.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++.+.+....++.+.+++.+.+....++..+......+. ++++++++++++|++.. +++++|+|+|+|+.+++.
T Consensus 5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~-~~v~~~~g~t~al~~~~~ 79 (362)
T 3ffr_A 5 KIYFTPGPSELYPTVRQHMITALDEKIGVISHRSKKFEEV----YKTASDNLKTLLELPSN-YEVLFLASATEIWERIIQ 79 (362)
T ss_dssp CEEECSSSCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHH----HHHHHHHHHHHTTCCTT-EEEEEESCHHHHHHHHHH
T ss_pred ceeccCCCcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHH----HHHHHHHHHHHhCCCCC-cEEEEeCCchHHHHHHHH
Confidence 3455666777889999888777765432222333344455 88999999999998532 359999999999999999
Q ss_pred hhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 143 YFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 143 al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++. ++ ++++....|.+ ..+...++..| .++.+.+..++++.++ .+++|++|++++++||||.++
T Consensus 80 ~l~-~~-~~i~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~---------~~~~~~~v~~~~~~nptG~~~ 147 (362)
T 3ffr_A 80 NCV-EK-KSFHCVNGSFS-KRFYEFAGELGREAYKEEAAFGKGFYPADIT---------VPADAEIICLTHNETSSGVSM 147 (362)
T ss_dssp HHC-SS-EEEEEECSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCGGGCC---------CCTTCCEEEEESEETTTTEEC
T ss_pred hcc-CC-cEEEEcCcHHH-HHHHHHHHHhCCCeEEEecCCCCCCCHHHHh---------ccCCccEEEEEcCCCCcceeC
Confidence 998 66 86655555544 23444555555 5566555556666654 246799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCC-CeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRS-NCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~-gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
|+++|.++|+ ++ |+++|+|++++.+..+.++.. +|++++|+||+|++|+|+|++++++++++.+.+
T Consensus 148 ~l~~i~~la~-----------~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~ 214 (362)
T 3ffr_A 148 PVEDINTFRD-----------KNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKA 214 (362)
T ss_dssp CHHHHTTSGG-----------GSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHH
T ss_pred CHHHHHHHHH-----------hCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhh
Confidence 9999999999 89 999999999999987777654 899999999999988899999999988877766
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
...|++.... ...+.............++++...+.++.++++.+...+. ..++..++++++.+.|+++
T Consensus 215 ~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 285 (362)
T 3ffr_A 215 LLAKRKSIGT---YHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS------ 285 (362)
T ss_dssp HHHTTCCCCS---TTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ccccCCCCcc---cccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc------
Confidence 5554433111 0111000001111233788999999999999987765432 2288899999999999998
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
|+++++.+.. ....+.+++|.+++ +..++.+.|.++||.+++|..|.
T Consensus 286 ~g~~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~~g~~~~------------------------ 332 (362)
T 3ffr_A 286 KVFSFGVEDA---KLRSMTTIVANTTM------LPGEINKILEPFDMAVGAGYGSK------------------------ 332 (362)
T ss_dssp SSEEESSSCG---GGBCSSEEEEEESS------CHHHHHHHHGGGTEEEEECSGGG------------------------
T ss_pred cCceeccCCh---hhcCCceEEEecCC------CHHHHHHHHHHCCeEEecCcccc------------------------
Confidence 7899886432 12346788888765 23458888888899999874321
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++.+++++|+++++++|++++
T Consensus 333 -----------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 -----------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp -----------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred -----------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 13789999999999999999999999864
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-30 Score=285.82 Aligned_cols=359 Identities=10% Similarity=0.015 Sum_probs=261.8
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+|+.....+|||+.+....++.+.+++.+.+. + +........ ++++++++++++|+++++ +++|+|+|
T Consensus 2 ~fp~~~~~~yl~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~t~g~t 69 (392)
T 2z9v_A 2 RYPEHADPVITLTAGPVNAYPEVLRGLGRTVL-----Y-DYDPAFQLL----YEKVVDKAQKAMRLSNKP--VILHGEPV 69 (392)
T ss_dssp CCCTTSCCSEECSSSCCCCCHHHHHHTTSCCC-----C-TTSHHHHHH----HHHHHHHHHHHTTCSSCC--EEESSCTH
T ss_pred CcccCCCcceeecCCCcCCCHHHHHHHhcccc-----c-cccHHHHHH----HHHHHHHHHHHhCCCCCE--EEEeCCch
Confidence 45666778999999988888888887755332 1 222233344 789999999999998766 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+|+.+++.++. ++|| |+++..+|++.. +...+...| .++++.++.++++.++++++ + ++++++|++++
T Consensus 70 ~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~--~~~~~~v~~~~ 142 (392)
T 2z9v_A 70 LGLEAAAASLI-SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLK---A--HPEITVVSVCH 142 (392)
T ss_dssp HHHHHHHHHHC-CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHH---H--CTTCCEEEEES
T ss_pred HHHHHHHHHhc-CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHh---c--CCCCcEEEEec
Confidence 99999999986 8998 889898888763 444444444 56666655577777776542 0 35689999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEec
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++||||.++|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++|.|+|++++++
T Consensus 143 ~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~ 211 (392)
T 2z9v_A 143 HDTPSGTINPIDAIGALVS-----------AHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSE 211 (392)
T ss_dssp EEGGGTEECCHHHHHHHHH-----------HTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECH
T ss_pred cCCCCceeccHHHHHHHHH-----------HcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECH
Confidence 9999999999999999999 89999999999998887777766789999999999776688999999998
Q ss_pred ccccccCcccccCceEEEEecCCcccccccC-ccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHH
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDG-LFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYF 366 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L 366 (815)
++++.+++...|.+. ....+...... ....+..++++...++++.++++.+...+. . .++..++++++.+.|
T Consensus 212 ~~~~~l~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L 286 (392)
T 2z9v_A 212 RAWAKMKANPLAPRA-----SMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGV 286 (392)
T ss_dssp HHHHHHHTCTTSCCS-----STTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCc-----eeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 877666432210000 00000000000 012455788999999988888888766532 2 388899999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+++ +++++.+.. ....+++++|.++.. .+..++.+.|.++ ||.+++|..+.
T Consensus 287 ~~~-------g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~l~~~L~~~~gi~v~~g~~~~-------------- 338 (392)
T 2z9v_A 287 TAM-------GLSVWAASD---SIASPTTTAVRTPDG----VDEKALRQAARARYGVVFSSGRGET-------------- 338 (392)
T ss_dssp HHT-------TCCBSSSSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG--------------
T ss_pred HHc-------CCeeccCCc---cccCCceEEEECCCC----CCHHHHHHHHHhcCCEEEecCCCCC--------------
Confidence 876 455554221 012467888887521 2334577888776 99998875310
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|+ +++++++|+++++++|++++.+
T Consensus 339 ---------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 339 ---------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ---------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 037899995 5488999999999999998754
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=276.96 Aligned_cols=338 Identities=12% Similarity=0.056 Sum_probs=251.4
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
|+.+.+..++++.+.+++.+.+.. +........ +.++++++++++|+++++ +++|+|+|+|+.+++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~~--i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH------HRTEAAREV----FLKARGLLREAFRTEGEV--LILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCSSEE--EEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC------ccCHHHHHH----HHHHHHHHHHHhCCCCce--EEEcCchHHHHHHHHHh
Confidence 566677778888888877654321 222333344 789999999999998655 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. ++|| |+++..+|+++. +...+...| .++++.++.++++.+++ +++++|++++++||||.++
T Consensus 71 ~~-~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~----------~~~~~v~~~~~~nptG~~~ 138 (352)
T 1iug_A 71 LF-APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK----------EGYAGLLLVHSETSTGALA 138 (352)
T ss_dssp HC-CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC----------SSCSEEEEESEETTTTEEC
T ss_pred cc-CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc----------cCCcEEEEEEecCCcceec
Confidence 96 8998 888888898876 555555555 55666554455555432 4689999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCC--CeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccC
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~ 296 (815)
|+++|.++|+ ++ |+++|+|++++.|..++++..+++|++++|+||++++|.|+|+++++++.++.++
T Consensus 139 ~l~~i~~l~~-----------~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~ 207 (352)
T 1iug_A 139 DLPALARAFK-----------EKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLK 207 (352)
T ss_dssp CHHHHHHHHH-----------HHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCC
T ss_pred CHHHHHHHHH-----------hhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhh
Confidence 9999999999 78 9999999999988877777666899999999996666889999999988776554
Q ss_pred cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCC
Q psy16512 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
+ ++. +..+.........++..++++...+.++.++++.+......+ ++.+++++++.+.|+++
T Consensus 208 ~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 271 (352)
T 1iug_A 208 P---RGY-------YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG------ 271 (352)
T ss_dssp C---CSS-------TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred C---CCc-------eeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Confidence 3 110 000000000011245577899999988888888765432233 88899999999999886
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
+++++.+. ..+++++|.++.. .+..++.+.|.++||.+++|..+ .
T Consensus 272 -g~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~----~-------------------- 316 (352)
T 1iug_A 272 -GLRPVPKR------FSPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQGP----L-------------------- 316 (352)
T ss_dssp -TCEESCSS------BCTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCGG----G--------------------
T ss_pred -CCcccccc------cCCeEEEEEcCCC----CCHHHHHHHHHHCCEEEEeCCCc----c--------------------
Confidence 56776542 1367888887631 23346888888889999887521 0
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++|++++.+++++|+++++++|++++.+-
T Consensus 317 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 317 -----------KGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp -----------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 03789999999999999999999999987543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=279.78 Aligned_cols=362 Identities=10% Similarity=0.125 Sum_probs=258.3
Q ss_pred CCcceeeecccccc-chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCc
Q psy16512 46 FGYHIIMVEGKNHL-KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDH 124 (815)
Q Consensus 46 fGyhIi~ved~~~~-~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~ 124 (815)
|+.+..+. .|++. ++.+|+++.+....++.+.+++.+.+.. +........ .+++++++++++|++++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~- 70 (393)
T 2huf_A 3 YKVTPPAV-LREPLVTPNKLLMGPGPSNAPQRVLDAMSRPILG------HLHPETLKI----MDDIKEGVRYLFQTNNI- 70 (393)
T ss_dssp CSSCCCGG-GGSCCCCCCCEECSSSCCCCCHHHHHHTTSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCCCS-
T ss_pred ccccchhh-hhcccCCCCeEEecCCCCCCCHHHHHHHHhhhcc------CCCHHHHHH----HHHHHHHHHHHhCCCCC-
Confidence 44444443 35554 3467888888777888887776543321 111122334 88999999999999765
Q ss_pred eeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcC
Q psy16512 125 YSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMR 199 (815)
Q Consensus 125 ~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (815)
+.|++|+|+|+|+.+++.++. ++|| |+++..+|++. .+...++..| .++++.++.++++.++++++
T Consensus 71 ~~i~~~~g~t~a~~~~~~~~~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------- 141 (393)
T 2huf_A 71 ATFCLSASGHGGMEATLCNLL-EDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALL------- 141 (393)
T ss_dssp EEEEESSCHHHHHHHHHHHHC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------
T ss_pred cEEEEcCcHHHHHHHHHHHHh-CCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHh-------
Confidence 249999999999999999996 8998 88888888874 3444444455 56666555567777766543
Q ss_pred C-CccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccccc
Q psy16512 200 H-SNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278 (815)
Q Consensus 200 ~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~ 278 (815)
+ ++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++
T Consensus 142 ~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g 210 (393)
T 2huf_A 142 IHKPSVLFLTQGDSSTGVLQGLEGVGALCH-----------QHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGA 210 (393)
T ss_dssp HHCCSEEEEESEETTTTEECCCTTHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCC
T ss_pred ccCCcEEEEEccCCCccccCCHHHHHHHHH-----------HcCCEEEEEcccccCCCCcchhhcCccEEEECCCccccc
Confidence 3 6899999999999999999999999999 899999999999998887777777899999999998766
Q ss_pred CCcceEEEEecccccccCcc-------cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-h
Q psy16512 279 PTGLGALIVKQKSAHVLNKT-------FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-K 350 (815)
Q Consensus 279 p~G~G~l~~~~~~~~~l~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~ 350 (815)
|+|+|++++++++++.+++. +.+++.. ..++ ......+++.++++..+++++.++++.+...+ .
T Consensus 211 ~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 282 (393)
T 2huf_A 211 PPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLV------GDYW--GCFGRPRIYHHTISSTLLYGLREAIAMACEEGLP 282 (393)
T ss_dssp CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHH------HHHT--TCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCeEEEEECHHHHHHHhhcCCCCceEEEchHHH------Hhhh--ccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 88999999998877655332 1110000 0000 00112356778999999999988998876432 2
Q ss_pred -hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCc
Q psy16512 351 -SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGC 428 (815)
Q Consensus 351 -~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~ 428 (815)
..++..++++++.+.|+++ +++++.+.. ...+.++.+.++.. .+..++.+.|. ++||.+++|.
T Consensus 283 ~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~g~ 347 (393)
T 2huf_A 283 ALIARHEDCAKRLYRGLQDA-------GFELYADPK----DRLSTVTTIKVPQG----VDWLKAAQYAMKTYLVEISGGL 347 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-------TCCBSSCGG----GBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHc-------CCeeccCcc----ccCCcEEEEEcCCC----CCHHHHHHHHHHhCCEEEecCc
Confidence 2388899999999999886 455554421 12245778877521 22345777775 4699998875
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC-CCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH-ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~-~~t~edi~~lv~~L~~~~~~ 497 (815)
.|. ..+++|++++. .++++++++++++|++++.+
T Consensus 348 ~~~-----------------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 348 GPT-----------------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAA 382 (393)
T ss_dssp GGG-----------------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ccc-----------------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHH
Confidence 431 03789999944 45799999999999998754
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=275.94 Aligned_cols=356 Identities=12% Similarity=0.104 Sum_probs=258.9
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+|+..+..+||++.+.+..++.+.+++.+.+. + +........ .+++++++++++|++ ++ .+++|+|+
T Consensus 13 ~f~~~~~~~~l~~~~~~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~~~~~la~~~g~~~~~--~v~~~~g~ 80 (386)
T 2dr1_A 13 VYEMVKPKYKLFTAGPVACFPEVLEIMKVQMF-----S-HRSKEYRKV----HMDTVERLREFLEVEKGE--VLLVPSSG 80 (386)
T ss_dssp HHHHHSCCSEECCSSSCCCCHHHHHHTTSCCC-----C-TTSHHHHHH----HHHHHHHHHHHHTCSSSE--EEEESSCH
T ss_pred HHhhcCccceeecCCCcCCcHHHHHHHhcccc-----c-ccCHHHHHH----HHHHHHHHHHHhCCCCCc--EEEEeCCh
Confidence 34434556899999888888888777654322 1 111222344 889999999999997 33 49999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
++|+.+++.++. ++|| |+++...|++. .+...+...| .++.+.++..+++.++++++ + .+++++|+++
T Consensus 81 t~a~~~~~~~l~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~---~--~~~~~~v~~~ 153 (386)
T 2dr1_A 81 TGIMEASIRNGV-SKGGKVLVTIIGAFGK-RYKEVVESNGRKAVVLEYEPGKAVKPEDLDDALR---K--NPDVEAVTIT 153 (386)
T ss_dssp HHHHHHHHHHHS-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH---H--CTTCCEEEEE
T ss_pred HHHHHHHHHHhh-cCCCeEEEEcCCchhH-HHHHHHHHhCCceEEEecCCCCCCCHHHHHHHHh---c--CCCCcEEEEE
Confidence 999999999986 8898 88888888762 1333344444 56666555577777776542 0 3578999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+++||||.+.|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|+++++
T Consensus 154 ~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~ 222 (386)
T 2dr1_A 154 YNETSTGVLNPLPELAKVAK-----------EHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFS 222 (386)
T ss_dssp SEETTTTEECCHHHHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEEC
T ss_pred eecCCcchhCCHHHHHHHHH-----------HcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEEC
Confidence 99999999999999999999 8999999999999888777777778999999999999977789999999
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCcc-ccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF-EKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYTYF 364 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l~~ 364 (815)
+++++.+.+....+.. ..+........ .++..++++...+.++.++++.+... + .. .++.+++++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~ 295 (386)
T 2dr1_A 223 ERFLEIAEKMPERGWY-------FDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVRE 295 (386)
T ss_dssp HHHHHHHTTCTTCCST-------TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceE-------EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 8877666432111110 00000000001 23556788999999998999887654 2 22 3888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|+++ +++++.+.. ...++++++.++.. .+..++.+.|.++||.+++|..+.
T Consensus 296 ~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~~~~~~------------- 347 (386)
T 2dr1_A 296 GVREI-------GLDILAEPG----HESPTITAVLTPPG----IKGDEVYEAMRKRGFELAKGYGSV------------- 347 (386)
T ss_dssp HHHHT-------TCCBSSCTT----CBCSSEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG-------------
T ss_pred HHHHc-------CCeeCcCcc----ccCCceEEEEcCCC----CCHHHHHHHHHHCCeEEecCcccc-------------
Confidence 99886 455554421 12467888887631 233457888888899998875210
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|++++.+++++|+++++++|++++.+
T Consensus 348 ----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 348 ----------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp ----------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0378999999999999999999999998643
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=274.35 Aligned_cols=344 Identities=13% Similarity=0.105 Sum_probs=250.1
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
...+..++++.+.+++.+.+.. +........ ++++++++++++|++++..++++|+|+|+|+. ++.++.
T Consensus 6 ~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~ 74 (384)
T 3zrp_A 6 LHVGPTTIKEDVLVAGLENNVG------FTSKEFVEA----LAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLL 74 (384)
T ss_dssp CCSSCSCCCHHHHHHTTCCSCC------TTSHHHHHH----HHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGC
T ss_pred ccCCCCCCCHHHHHHhhccccc------cccHHHHHH----HHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhc
Confidence 3445556677777766443221 112333444 88999999999999873224999999999999 888886
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
++|| |+++...|++. .+...+...| .++++.++.++++.++++++ ..++++|++++++||||.++|+
T Consensus 75 -~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~~~l 146 (384)
T 3zrp_A 75 -KPNDKILVVSNGVFGD-RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVR------KSEYKLVALTHVETSTGVREPV 146 (384)
T ss_dssp -CTTCEEEEECSSHHHH-HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHH------HSCEEEEEEESEETTTTEECCH
T ss_pred -CCCCEEEEecCCcchH-HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHH------hCCCcEEEEeCCCCCCceECcH
Confidence 8999 88888777552 2445555556 45556555677777776553 1268999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccccc-Cccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL-NKTF 299 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l-~~~~ 299 (815)
++|.++|+ ++|+++|+|++++.+..+.++..+++|++++|+||++++|.|+|+++++++.++.+ ++..
T Consensus 147 ~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~ 215 (384)
T 3zrp_A 147 KDVINKIR-----------KYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNS 215 (384)
T ss_dssp HHHHHHHG-----------GGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCC
T ss_pred HHHHHHHH-----------hcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCC
Confidence 99999999 89999999999999988888888889999999999887688999999999887665 3211
Q ss_pred ccCceEEEEecCCcccccccCcc------ccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccc
Q psy16512 300 YGGGTVKISMANENFHIKKDGLF------EKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~------~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
.... +.... ...... .....|+++...+.++.++++.+...+. .+ ++.+++++++.+.|+++
T Consensus 216 ~~~~-------~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 285 (384)
T 3zrp_A 216 IAGY-------YLDLR-NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL-- 285 (384)
T ss_dssp SCCS-------TTCHH-HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CCcc-------cccHH-HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--
Confidence 0000 00000 000000 1222368999999999999988776532 22 88899999999999887
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
+++++.+.. ....+.+++|.+++. +..++.+.|.++||.+++|.+|.
T Consensus 286 -----g~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~-------------------- 332 (384)
T 3zrp_A 286 -----GLEIVARRP---ESYSNTVTGVILKVA-----DPQKVLAGTVNEGVEFAPGVHPA-------------------- 332 (384)
T ss_dssp -----TCCBSCSSG---GGBCSSEEEEECSSS-----CHHHHHHHHHTTTCCCEECCCTT--------------------
T ss_pred -----CCeEccCcc---cccCccEEEEECCCC-----CHHHHHHHHHHCCEEEecCCCCC--------------------
Confidence 556665431 122367778887652 33468888888899998775321
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.+++|++++.+++++|+++++++|++++.+-
T Consensus 333 ----------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 363 (384)
T 3zrp_A 333 ----------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKL 363 (384)
T ss_dssp ----------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHc
Confidence 1689999999999999999999999987653
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=266.55 Aligned_cols=360 Identities=12% Similarity=0.107 Sum_probs=255.6
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh--h--hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEec
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--S--VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFT 130 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--~--~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t 130 (815)
+|+..++.+|||+++.++.++.+.+++.+.+... ++++... + ..... ++++++++++++|+++++ |++|
T Consensus 22 ~f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~-~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~~~--v~~~ 94 (416)
T 1qz9_A 22 QFALPEGVIYLDGNSLGARPVAALARAQAVIAEE-WGNGLIRSWNSAGWRDL----SERLGNRLATLIGARDGE--VVVT 94 (416)
T ss_dssp GBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTC-CCCCGGGHHHHTSGGGH----HHHHHHHHHTTTTCCTTS--EEEC
T ss_pred hCCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHH-HhccCccccchhhHHHH----HHHHHHHHHHHcCCCccc--EEEe
Confidence 4454567899999998888899999988877542 4444321 1 11233 789999999999998776 9999
Q ss_pred CCchhhHHHHHhhhc-c----CCCc-E-EEecCCCcchhhHH-HHhhcc--c--eEEcCchhhhcchhhhhhhhhhhhhc
Q psy16512 131 SGATSAIKTVSEYFE-F----NEGS-F-IYLTDNHTSVLGMR-ELVKTN--Q--IYSFSVDDARNMLNEFKESQENVENM 198 (815)
Q Consensus 131 ~g~t~al~~~~~al~-~----~~gd-v-v~~~~~h~s~~~~~-~~~~~~--g--~v~~~~~~~~~~~~~~~~l~~~~~~~ 198 (815)
+|+++++.+++.++. + ++|| + +++..+|+++.... ..+... | .+.++. ++.+++ .+
T Consensus 95 ~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-----~~~l~~-------~i 162 (416)
T 1qz9_A 95 DTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-----PEELPQ-------AI 162 (416)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-----GGGHHH-------HC
T ss_pred CChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-----HHHHHH-------Hh
Confidence 999999988888763 3 6787 4 45556898766533 333332 5 333332 334443 33
Q ss_pred CCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEcccccccc
Q psy16512 199 RHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~ 278 (815)
++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++
T Consensus 163 ~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~ 231 (416)
T 1qz9_A 163 DQDTAVVMLTHVNYKTGYMHDMQALTALSH-----------ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNG 231 (416)
T ss_dssp STTEEEEEEESBCTTTCBBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCC
T ss_pred CCCceEEEEeccccCcccccCHHHHHHHHH-----------HcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCC
Confidence 467999999999999999999999999999 899999999999988877666556799999999998754
Q ss_pred CCcc-eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHH
Q psy16512 279 PTGL-GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNA 355 (815)
Q Consensus 279 p~G~-G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~ 355 (815)
+.|+ |++++++++++.+++...++............+ .......++..|+++..+++++.++++.+...+. . .++.
T Consensus 232 g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~ 310 (416)
T 1qz9_A 232 GPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRY-EPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKS 310 (416)
T ss_dssp CTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSC-CBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCCeEEEEECHHHHhccCCCccccCccccccCCCCcc-CCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5677 999999998777766543321100000000000 0112234567889999999999899988754332 2 2888
Q ss_pred HHHHHHHHHHHHhccccCCCC--cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCch
Q psy16512 356 FELSQYTYFYFKQLSYSNGQP--LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPG 433 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p--~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~ 433 (815)
.++++++.+.|+++. | +++++.+.. ....++++++.+++ ..++.+.|.++||.+...
T Consensus 311 ~~~~~~l~~~L~~~~-----~~~g~~~~~~~~---~~~~~~~~~~~~~~-------~~~l~~~l~~~gi~~~~~------ 369 (416)
T 1qz9_A 311 LALTDLFIELVEQRC-----AAHELTLVTPRE---HAKRGSHVSFEHPE-------GYAVIQALIDRGVIGDYR------ 369 (416)
T ss_dssp HHHHHHHHHHHHHHH-----TTSCCEECSCSS---GGGBCSEEEEECTT-------HHHHHHHHHTTTEECEEE------
T ss_pred HHHHHHHHHHHHhhc-----cCCCeEEeCCCC---HHHcCCEEEEecCC-------HHHHHHHHHhCCcEeccC------
Confidence 999999999998741 3 677776532 11236778887653 235788888889986421
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
..+++|++++ ++++++|+++++++|++++.+..
T Consensus 370 ---------------------------------~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 370 ---------------------------------EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 403 (416)
T ss_dssp ---------------------------------TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhccc
Confidence 0378999998 58999999999999999876543
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=267.77 Aligned_cols=340 Identities=10% Similarity=0.090 Sum_probs=245.3
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.+.+..+.++.+.+++.+.+.. +........ .+++++++++++|++.+.+.+++|+|+++|+.+++.++.
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~ 73 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMRG------HLDPEVLRV----NRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD 73 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCCC------TTCHHHHHH----HHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred CCCCCCCCCHHHHHHHhccccc------ccCHHHHHH----HHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence 3445566677777766543321 222223344 889999999999986222349999999999999999987
Q ss_pred cCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccccCh
Q psy16512 146 FNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l 220 (815)
+ +.++++..+|+++ .+...+...| .++++.++.++++.++++++ + ++++|++++++||||.+.|+
T Consensus 74 -~-d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~nptG~~~~~ 143 (353)
T 2yrr_A 74 -R-GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALK-------RRRYRMVALVHGETSTGVLNPA 143 (353)
T ss_dssp -C-CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHH-------HSCCSEEEEESEETTTTEECCH
T ss_pred -C-CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHH-------hCCCCEEEEEccCCCcceecCH
Confidence 5 3488888888886 5555555555 56666655577777776553 3 68999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|.++|+ ++|+++|+|++++.+..+.++..+++|++++|+||++++|+|+|+++++++.++.++. ..
T Consensus 144 ~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~ 211 (353)
T 2yrr_A 144 EAIGALAK-----------EAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KR 211 (353)
T ss_dssp HHHHHHHH-----------HHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CS
T ss_pred HHHHHHHH-----------HcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CC
Confidence 99999999 8999999999998887766665567899999999977668899999999988766642 00
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHhccccCCCCcE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFKQLSYSNGQPLV 378 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~~l~~~~~~p~~ 378 (815)
+.. ..+.............++++...+.++.++++.+...+. . .++.+++++++.+.|+++ ++
T Consensus 212 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~ 276 (353)
T 2yrr_A 212 GWY--------LDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR-------GF 276 (353)
T ss_dssp CST--------TCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TC
T ss_pred Ccc--------ccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-------CC
Confidence 000 000000000012345678899988888888888765432 2 388899999999999886 56
Q ss_pred EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 379 ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 379 ~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
+++.+. ...+.+++|.++.. .+..++.+.|.++||.+++|..|.
T Consensus 277 ~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~~~--------------------------- 320 (353)
T 2yrr_A 277 RPYPKA-----SPLPTVLVVRPPEG----VDADRLVRALYAEGVAVAGGIGPT--------------------------- 320 (353)
T ss_dssp EESCSS-----SBCTTEEEEECCTT----CCHHHHHHHHHHTTEECEECCGGG---------------------------
T ss_pred ccccCc-----cCCCeEEEEECCCC----CCHHHHHHHHHHCCEEEeCCcccc---------------------------
Confidence 776542 12356777877521 234468888888899999875321
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHH-HHHHHHHHHHh
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVK-YFLSFLNQYFL 496 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~-~lv~~L~~~~~ 496 (815)
..+++|+|++.+++++|++ +++++|++++.
T Consensus 321 --------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 321 --------RGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp --------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 0368999998888999999 99999998764
|
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=233.54 Aligned_cols=120 Identities=15% Similarity=0.272 Sum_probs=111.1
Q ss_pred EeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCeeEEEe
Q psy16512 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIG 614 (815)
Q Consensus 535 v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~~~~~ 614 (815)
|++|||||||||+|++|+ ++. ++||+|||+|++|+|+|||++|+|++|++.+ +.+.|+|++|+++ ++.|+
T Consensus 1 v~~L~iYPIKSc~g~~l~-~a~------~~DR~wmlvd~~G~~lt~r~~P~Lali~~~~--~~~~L~l~~pg~~-~l~vp 70 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQS-EAA------AYQKRWLVANDAGQWLNRDLCPRLAEVSVEL--RMGYLVLKAPGML-RLDIP 70 (136)
T ss_dssp CCCCCEEEETTTEEECCG-GGG------GTCCSEEEEETTSCEECTTTCGGGGCCEEEE--CSSEEEEECSSSC-EEEEE
T ss_pred CceEEEeccccCCceecC-ccC------ccCCcEEEEeCCCCEEEccCCccccEEEEEe--cCCEEEEEeCCCc-eEEEE
Confidence 578999999999999999 875 9999999999999999999999999999999 5579999999999 99999
Q ss_pred cCCCC---CceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCC
Q psy16512 615 IDNEG---LDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSK 665 (815)
Q Consensus 615 ~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~ 665 (815)
+++.. .....+++|++.+.+++||+++++|||++||+| +||++++++..|
T Consensus 71 l~~~~~~~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~Lg~p-~rLv~~~~~~~R 123 (136)
T 2exn_A 71 LDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVP-CRILKVHPDMAE 123 (136)
T ss_dssp SSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSS-EEEEEECTTTCC
T ss_pred CCCccccccCceeEEEeCCcceeEeccHHHHHHHHHHhCCC-eEEEEcCCCCcc
Confidence 98753 256789999999999999999999999999999 999999987665
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-28 Score=268.23 Aligned_cols=341 Identities=11% Similarity=0.094 Sum_probs=248.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~~~ 140 (815)
..|+++.+....++.+.+++.+.+.. +........ .+++++++++++|++++ + +++|+|+|+|+.++
T Consensus 34 ~~~l~~~~~~~~~~~v~~a~~~~~~~------~~~~~~~~~----~~~~~~~la~~~g~~~~~~--v~~t~g~t~al~~~ 101 (393)
T 1vjo_A 34 SRLLLGPGPSNAHPSVLQAMNVSPVG------HLDPAFLAL----MDEIQSLLRYVWQTENPLT--IAVSGTGTAAMEAT 101 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHHSSCCCC------TTSHHHHHH----HHHHHHHHHHHHTCCCSCE--EEESSCHHHHHHHH
T ss_pred cceeccCCCCCCCHHHHHHHhccccc------ccCHHHHHH----HHHHHHHHHHHhCCCCCcE--EEEeCchHHHHHHH
Confidence 57899988888888888877553321 111222334 78999999999999766 5 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCC
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFS 214 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~t 214 (815)
+.++. ++|| |++....|++. .+...+...| .++++.++.++++.++++++ + ++++|++++++|||
T Consensus 102 ~~~~~-~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~npt 172 (393)
T 1vjo_A 102 IANAV-EPGDVVLIGVAGYFGN-RLVDMAGRYGADVRTISKPWGEVFSLEELRTALE-------THRPAILALVHAETST 172 (393)
T ss_dssp HHHHC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------HHCCSEEEEESEETTT
T ss_pred HHhcc-CCCCEEEEEcCChhHH-HHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHh-------hCCceEEEEeccCCCc
Confidence 99997 8998 88888888761 1333334444 56666655577777776553 3 68999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.+.|+++|.++|+ ++|+++|+|++++.|..++++...++|+++.|+||++++|.|+|++++++++++.
T Consensus 173 G~~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~ 241 (393)
T 1vjo_A 173 GARQPLEGVGELCR-----------EFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEK 241 (393)
T ss_dssp TEECCCTTHHHHHH-----------HHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHH
T ss_pred ceeccHHHHHHHHH-----------HcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHH
Confidence 99999999999999 8999999999999888888887788999999999998878789999999887765
Q ss_pred cCc-------ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHH
Q psy16512 295 LNK-------TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYFY 365 (815)
Q Consensus 295 l~~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~~ 365 (815)
++. .+++.. |...+ ....++..|+++...+.++.++++.+...+ .. .++..++++++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~ 310 (393)
T 1vjo_A 242 LQRRRTKVANWYLDMN----------LLGKY-WGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER 310 (393)
T ss_dssp HHTCSSCCSCSTTCHH----------HHHHH-HSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCceecCcH----------hhhhh-hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 521 111100 00000 001134445889999999999998865432 22 38889999999999
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
|+++ +++++.+.. ...++++.+.++.. .+..++.+.|.++ ||.+++|..|..
T Consensus 311 L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~~------------ 363 (393)
T 1vjo_A 311 LEDI-------GLSLHVEKE----YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGELA------------ 363 (393)
T ss_dssp HHHT-------TCCBSSCGG----GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGGT------------
T ss_pred HHHc-------CCcccCCcc----ccCCcEEEEEcCCC----CCHHHHHHHHHhhCCEEEecCccccC------------
Confidence 9886 455554431 11356778877521 2234577777776 999998763210
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|||+ ++.++++++++++++|++++
T Consensus 364 -----------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 364 -----------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp -----------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -----------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 37899995 55567888999999999875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=268.78 Aligned_cols=322 Identities=12% Similarity=0.098 Sum_probs=237.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~ 181 (815)
++++++++++++|++++. .+++++|+|+|+.+++.++. ++|| |+++...|++.. +...+...| .++++.++.
T Consensus 46 ~~~l~~~la~~~g~~~~~-~~~~~~s~t~al~~~~~~l~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~ 122 (416)
T 3isl_A 46 MNETMEMLRELFQTKNRW-AYPIDGTSRAGIEAVLASVI-EPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTV 122 (416)
T ss_dssp HHHHHHHHHHHTTCCCSE-EEEEESCHHHHHHHHHHHHC-CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHhCCCCCc-EEEecCcHHHHHHHHHHHhc-CCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCC
Confidence 889999999999998764 23488999999999999996 9999 888888877622 344444445 667776666
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
++++.++++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++|+.+..++++.
T Consensus 123 ~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~a~~~~~~~~~~~ 185 (416)
T 3isl_A 123 FDPEDIIREIK------KVKPKIVAMVHGETSTGRIHPLKAIGEACR-----------TEDALFIVDAVATIGGCEVKVD 185 (416)
T ss_dssp CCHHHHHHHHH------HHCCSEEEEESEETTTTEECCCHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCTT
T ss_pred CCHHHHHHHHh------hCCCcEEEEEccCCCCceecCHHHHHHHHH-----------HcCCEEEEECCccccCCCcchh
Confidence 78887776553 136899999999999999999999999999 8999999999999998888888
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCccc---ccCceE----------EEEecCCccccc-ccCccccccC
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF---YGGGTV----------KISMANENFHIK-KDGLFEKFED 327 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~---~g~~~~----------~~~~~~~~~~~~-~~~~~~~~~~ 327 (815)
.+++|++++|+||++++|.|+|++++++++++.+.+.. .||... .....+...... ......++..
T Consensus 186 ~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~ 265 (416)
T 3isl_A 186 EWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNH 265 (416)
T ss_dssp TTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCS
T ss_pred hcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCC
Confidence 88999999999998665889999999998877665321 111110 000000000000 0001345678
Q ss_pred CCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
++++...+.++.++++.+...+ ..+ ++..++++++.+.|+++ +++++.+.. ...+++++|.++..
T Consensus 266 ~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~-- 332 (416)
T 3isl_A 266 HTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-------GLRLFGDDS----CKMPVVTCVEIPGG-- 332 (416)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBCSCGG----GBCTTEEEEECCTT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-------CCEeccCcc----ccCCcEEEEeCCCC--
Confidence 8999999999999998877653 223 88999999999999886 566665432 23367888887532
Q ss_pred CccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH-
Q psy16512 406 TYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD- 483 (815)
Q Consensus 406 ~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed- 483 (815)
.+..++.+.|.++ ||.+++|... ...+++|++++.+++.+|
T Consensus 333 --~~~~~l~~~L~~~~gi~v~~g~~~-----------------------------------~~~~~iRi~~~~~~~~~e~ 375 (416)
T 3isl_A 333 --IDGESVRDMLLAQFGIEIASSFGP-----------------------------------LAGKIWRIGTMGYSCRKEN 375 (416)
T ss_dssp --CCHHHHHHHHHHHHCEECBCCCST-----------------------------------TTTTEEEEECCGGGCSHHH
T ss_pred --CCHHHHHHHHHHhCCEEEecCCCC-----------------------------------CCCCEEEEecccCCCcHHH
Confidence 2234577777655 9999877421 113789999977777777
Q ss_pred HHHHHHHHHHHHhhc
Q psy16512 484 VKYFLSFLNQYFLQQ 498 (815)
Q Consensus 484 i~~lv~~L~~~~~~~ 498 (815)
+++++++|++++.+-
T Consensus 376 i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 376 VLFVLAGLEAVLLRH 390 (416)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999987653
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=267.92 Aligned_cols=356 Identities=12% Similarity=0.072 Sum_probs=254.0
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++...+...+++.+.+++.+.+ .. +........ ++++++++++++|++.++ .+++++|+++|+.+++.
T Consensus 14 ~~~~~pgp~~~~~~v~~a~~~~~----~~--~~~~~~~~~----~~~~~~~la~~~~~~~~~-~v~~~~sgt~al~~~~~ 82 (411)
T 3nnk_A 14 RLLMGPGPINADPRVLRAMSSQL----IG--QYDPAMTHY----MNEVMALYRGVFRTENRW-TMLVDGTSRAGIEAILV 82 (411)
T ss_dssp CEEESSSCCCCCHHHHHHHTSCC----CC--TTCHHHHHH----HHHHHHHHHHHHTCCCSE-EEEEESCHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhhccc----cc--cccHHHHHH----HHHHHHHHHHHhCCCCCc-EEEECCCcHHHHHHHHH
Confidence 34555556666777776664322 11 111223344 789999999999997653 47889999999999999
Q ss_pred hhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++. ++|| |++...+|++.. +...+...| .++++.++.++++.++++++ ..++++|++++++||||.+
T Consensus 83 ~~~-~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~nptG~~ 154 (411)
T 3nnk_A 83 SAI-RPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVK------RIRPRLLLTVQGDTSTTML 154 (411)
T ss_dssp HHC-CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH------HHCCSEEEEESEETTTTEE
T ss_pred Hhc-CCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHh------hCCCeEEEEeCCCCCccee
Confidence 996 8999 888888886622 334444445 56776666678888777553 1268999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
.|+++|.++|+ ++|+++|+|++++.+..++++...++|++++|+||++++|.|+|++++++++++.+.+
T Consensus 155 ~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 155 QPLAELGEICR-----------RYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRR 223 (411)
T ss_dssp CCCTTHHHHHH-----------HHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHT
T ss_pred ccHHHHHHHHH-----------HcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhh
Confidence 99999999999 8999999999999998888888889999999999986658899999999987765433
Q ss_pred ------ccccCceEEEE-ecCCccccccc-----CccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHH
Q psy16512 298 ------TFYGGGTVKIS-MANENFHIKKD-----GLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTY 363 (815)
Q Consensus 298 ------~~~g~~~~~~~-~~~~~~~~~~~-----~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~ 363 (815)
.+.|++..... .....++.... ....++..++++...+.++.++++.+...+. . .++..++++++.
T Consensus 224 ~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~ 303 (411)
T 3nnk_A 224 RKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALV 303 (411)
T ss_dssp TCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 23332211000 00000000000 0124567889999999999999988776532 2 388999999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCC
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
+.|+++ +++++.+.. ...+++++|.++.. .+..++.+.|.+ +||.+++|.. .
T Consensus 304 ~~L~~~-------g~~~~~~~~----~~~~~~~~~~~~~~----~~~~~l~~~l~~~~gi~v~~g~~----~-------- 356 (411)
T 3nnk_A 304 KGIQAM-------GLETFGDLK----HKMNNVLGVVIPQG----INGDQARKLMLEDFGIEIGTSFG----P-------- 356 (411)
T ss_dssp HHHHHT-------TCCBCSCGG----GBCSSEEEEECCTT----CCHHHHHHHHHHHHSEEEEECCG----G--------
T ss_pred HHHHHc-------CCEeCCCcc----cccccEEEEECCCC----CCHHHHHHHHHHhcCeEEeCccC----C--------
Confidence 999886 566665432 23467888887532 223457777755 5999987631 0
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+++ ++.++++|+++++++|++++.+-
T Consensus 357 -----------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~ 390 (411)
T 3nnk_A 357 -----------------------LHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYL 390 (411)
T ss_dssp -----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHc
Confidence 1137899998 77779999999999999987653
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=266.04 Aligned_cols=347 Identities=12% Similarity=0.133 Sum_probs=247.6
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-ceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-HYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-~~~iv~t~g~t~al~~~ 140 (815)
..|+.+.+...+++.+.+++.+.+. + +........ ..++++.+++++|++++ + |++|+|+|+|+.++
T Consensus 18 ~~~~~~~~p~~~~~~v~~a~~~~~~-----~-~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g~t~al~~~ 85 (396)
T 2ch1_A 18 EKIMMGPGPSNCSKRVLTAMTNTVL-----S-NFHAELFRT----MDEVKDGLRYIFQTENRAT--MCVSGSAHAGMEAM 85 (396)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCC-----C-TTCHHHHHH----HHHHHHHHHHHHTCCCSCE--EEESSCHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhccccc-----c-CCChhHHHH----HHHHHHHHHHHhCCCCCcE--EEECCcHHHHHHHH
Confidence 4456666666677777766543221 1 111122233 78999999999999876 5 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCC
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFS 214 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~t 214 (815)
+.++. ++|| |+++..+|+++. +...+...| .++++.++.++++.++++++ + ++++|++++++|||
T Consensus 86 ~~~~~-~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~npt 156 (396)
T 2ch1_A 86 LSNLL-EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIE-------LHQPKCLFLTHGDSSS 156 (396)
T ss_dssp HHHHC-CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHH-------HHCCSEEEEESEETTT
T ss_pred HHHhc-CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHH-------hCCCCEEEEECCCCCC
Confidence 99997 8998 889998888753 333444455 56666555677777776553 3 68999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
|.++|+++|.++|+ ++|+++|+|++++.|..++++..+++|+++.|+||++++|.|+|+++++++.++.
T Consensus 157 G~~~~~~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~ 225 (396)
T 2ch1_A 157 GLLQPLEGVGQICH-----------QHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDV 225 (396)
T ss_dssp TEECCCTTHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHH
T ss_pred ceecCHHHHHHHHH-----------HcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHh
Confidence 99999999999999 8999999999999988888888888999999999988778899999999877665
Q ss_pred cCcc-------cccCceEEEEecCCcccccc-cCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHH
Q psy16512 295 LNKT-------FYGGGTVKISMANENFHIKK-DGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYF 364 (815)
Q Consensus 295 l~~~-------~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~ 364 (815)
+... +++... +...+ .....++..++++..++.++.++++.+...+ .. .++.+++++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 296 (396)
T 2ch1_A 226 IRNRRTKSKVFYWDLLL---------LGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYE 296 (396)
T ss_dssp HHTCSSCCSCGGGCHHH---------HHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccceEechHH---------HHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4321 111000 00000 0011345678899999998888888764332 22 3888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.|+++ +++++.+.. ....+.++.+.++.. .+..++.+.|.+ +||.+++|..|.
T Consensus 297 ~L~~~-------g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~g~~~~------------ 350 (396)
T 2ch1_A 297 GLGKM-------GLDIFVKDP---RHRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLEVQGGLGPT------------ 350 (396)
T ss_dssp HHHHH-------TCCBSSCSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCBCCBCCCGGG------------
T ss_pred HHHHC-------CCeeccCCc---cccCCceEEEEcCCC----CCHHHHHHHHHHhCCEEEecCcccc------------
Confidence 99887 566665432 012345788877521 233457777755 599998764321
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++||++ ++..+++|+++++++|++++.+-
T Consensus 351 -----------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~ 383 (396)
T 2ch1_A 351 -----------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT 383 (396)
T ss_dssp -----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh
Confidence 137899999 55668999999999999987654
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=266.98 Aligned_cols=346 Identities=16% Similarity=0.099 Sum_probs=248.2
Q ss_pred hhhhhhh-hcccccchhhHHHHHHHHhhcc---ccCCCCh-hhhhhhhhhhHHHHHHH-HHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDY-TGAGVYSQSQMNQTIEQLKENI---FSHPHGN-SVLSDFCVSEIDQMRTK-ILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~-a~~~~~p~~v~~al~~~l~~~~---~~np~s~-~~~~~~~~~~~~~~r~~-la~~~g~~~~~~~iv~t~g~t 134 (815)
+.+|||. ...+..++.+.+++.+.+.... +++.+.. ...... ..+++++ +++++|++ + |++|+|+|
T Consensus 8 ~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~la~~~~~~--~--v~~~~g~t 79 (371)
T 2e7j_A 8 DFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPP----IHDFIHNQLPKFLGCD--V--ARVTNGAR 79 (371)
T ss_dssp CCEECCHHHHTCCCCHHHHHHHHHC--------------------CC----HHHHHHTHHHHHTTSS--E--EEEESSHH
T ss_pred CcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHH----HHHHHHHHHHHHcCCC--E--EEEeCChH
Confidence 4688998 5567778888888876554321 1111111 223344 8899999 99999986 4 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEE--cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYS--FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~--~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+.+++.++. ++|| |+++..+|+++.......+... .++ .+.+..++++.+++++++... .+++++|+++++
T Consensus 80 ~a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~--~~~~~~v~~~~~ 156 (371)
T 2e7j_A 80 EAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKK--RGEVVLALITYP 156 (371)
T ss_dssp HHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTT--TSCEEEEEEESS
T ss_pred HHHHHHHHHHh-CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcc--cCCeEEEEEECC
Confidence 99999999996 8998 8899989988766543332222 455 454456677777765531100 157899999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+||||.++|+++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|+++++++
T Consensus 157 ~nptG~~~~~~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~ 225 (371)
T 2e7j_A 157 DGNYGNLPDVKKIAKVCS-----------EYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225 (371)
T ss_dssp CTTTCCCCCHHHHHHHHH-----------TTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTT
T ss_pred CCCCcccCCHHHHHHHHH-----------HcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEech
Confidence 999999999999999999 899999999999998876666666789999999998886778999999998
Q ss_pred cccc-cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHH
Q psy16512 291 SAHV-LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA--FELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~--~~l~~~l~~~L~ 367 (815)
+++. +++...++.. ...++.++++...++++.++++.+.. ...++. +++++++.+.|+
T Consensus 226 ~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~ 286 (371)
T 2e7j_A 226 WAEIVLRRSEKYKNK-----------------EVELLGCTARGATIITLMASFPHVRE--RIKRWDEEVEKARRFAAEME 286 (371)
T ss_dssp TTTTTTCBCSSCTTS-----------------BGGGTTCCCCSHHHHHHHHHHHHHHH--HGGGHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccCccc-----------------ccccccCCcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 8776 6544321110 01244778888888888888888765 233778 899999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ +++++.+.. ..++++++.++ + ..++.+.|.++||.+++ .. ..+.
T Consensus 287 ~~-------~~~~~~~~~-----~~~~~~~~~~~--~-----~~~~~~~l~~~gi~~~~-~~-------~~~~------- 332 (371)
T 2e7j_A 287 KL-------GIKQLGDNP-----HNHDLMFFHAE--V-----LYEISKKAKGGRFFLYR-EL-------KSRK------- 332 (371)
T ss_dssp HT-------TCEEESSSS-----CCSSEEEEECH--H-----HHHHHHHSSSGGGHHHH-HH-------HHTT-------
T ss_pred Hc-------CcEEecCCC-----ccCceEEEECC--C-----HHHHHHHHHHCCEEEEe-cc-------cccc-------
Confidence 86 567765431 13678888875 1 23577888889998864 11 0010
Q ss_pred HHhhcCCccCCcccccCCCCceEEE-EeccCC-CCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIR-ISYGHA-SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iR-vs~g~~-~t~edi~~lv~~L~~~~~ 496 (815)
.+|...+++| ++++.+ ++++++++++++|++++.
T Consensus 333 ---------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~ 368 (371)
T 2e7j_A 333 ---------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE 368 (371)
T ss_dssp ---------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred ---------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH
Confidence 0011237899 999988 899999999999999764
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=262.38 Aligned_cols=352 Identities=11% Similarity=0.117 Sum_probs=248.6
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
++...+....++.+.+++.+.+. . +........ ..++++++++++|.+.+ +.|++|+|+++|+.+++.+
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~----~--~~~~~~~~~----~~~l~~~la~~~~~~~~-~~v~~~~gg~~al~~~~~~ 93 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMI----G--HMQKEMLQI----MEEIKQGIQYVFQTRNP-LTLVVSGSGHCAMETALFN 93 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCC----C--TTSHHHHHH----HHHHHHHHHHHHTCCCS-EEEEESCCTTTHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHhccccc----C--cccHHHHHH----HHHHHHHHHHHhCCCCC-cEEEEeCCcHHHHHHHHHh
Confidence 45555666677777776643221 1 111223344 78999999999998754 2599999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTK 217 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~ 217 (815)
+. ++|| +++....|.+. .+...+...| .++++.++.++++.++++++ + ++++|++++++||||.+
T Consensus 94 ~~-~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-------~~~~~~v~~~~~~nptG~~ 164 (393)
T 3kgw_A 94 LL-EPGDSFLTGTNGIWGM-RAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLA-------QHKPVLLFLVHGESSTGVV 164 (393)
T ss_dssp HC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHH-------HHCCSEEEEESEETTTTEE
T ss_pred cC-CCCCEEEEEeCCchhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHh-------hCCCcEEEEeccCCcchhh
Confidence 96 8999 77776554321 2344444455 56666666678887777553 3 68999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
.|+++|.++|+ ++|+++|+|++++.|..++++..+++|++++|+||++++|.|+|++++++++++.+.+
T Consensus 165 ~~l~~i~~l~~-----------~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~ 233 (393)
T 3kgw_A 165 QPLDGFGELCH-----------RYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYS 233 (393)
T ss_dssp CCCTTHHHHHH-----------HTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHT
T ss_pred ccHHHHHHHHH-----------HcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhc
Confidence 99999999999 8999999999999888888888888999999999988668899999999988766543
Q ss_pred ccccCceEEEEecCCcccccc-cCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHhccccCC
Q psy16512 298 TFYGGGTVKISMANENFHIKK-DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
...++... ......+...+ .....++..++++...+.++.++++.+...+. . .++..++++++.+.|+++
T Consensus 234 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 306 (393)
T 3kgw_A 234 RKTKPVSF--YTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEM----- 306 (393)
T ss_dssp CSSCCSCS--TTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred cCCCCCce--eecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 22111100 00000000000 01123567789999999999999988766432 2 388999999999999987
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+.. ....+.+++|.++.. .+..++.+.|.++ ||.+++|..+.
T Consensus 307 --g~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~gi~v~~g~~~~---------------------- 355 (393)
T 3kgw_A 307 --GLKFFVKDP---EIRLPTITTVTVPAG----YNWRDIVSYVLDHFSIEISGGLGPT---------------------- 355 (393)
T ss_dssp --TCCBSSSSG---GGBCSSEEEEECCTT----BCHHHHHHHHHHHHCEECBCCCGGG----------------------
T ss_pred --CCeeccCCh---hhcCCeEEEEeCCCC----CCHHHHHHHHHHhCCEEEeCCcccC----------------------
Confidence 556553321 122346667776531 2334577777666 99999875311
Q ss_pred CccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+++ ++..+++|+++++++|++++.+
T Consensus 356 -------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 356 -------------EERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp -------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 137899998 6556999999999999998754
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=261.93 Aligned_cols=343 Identities=9% Similarity=0.060 Sum_probs=240.0
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
-+.+....++.+.+++.+.+. .+........ ++++++++++++|++.+...+++|+|+++|+.+++.++.
T Consensus 23 ~~pgp~~~~~~v~~a~~~~~~------~~~~~~~~~~----~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 23 FTVGPVMSSEEVRAIGAEQVP------YFRTTEFSST----MLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CSSSSCCCCHHHHHHHTSCCC------CCSSHHHHHH----HHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred ecCCCCCCcHHHHHHhcCCCC------CCCCHHHHHH----HHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence 344556677887777654331 1222233344 789999999999997543235558999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
++|| +|+....+.+. .+...+...| .++.+.+..++++.++++ +++++++|++++++||||.++|+
T Consensus 93 -~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-------~~~~~~~v~~~~~~nptG~~~~l 163 (376)
T 3f0h_A 93 -TKKDKVLVIDGGSFGH-RFVQLCEIHEIPYVALKLEHGKKLTKEKLYEY-------DNQNFTGLLVNVDETSTAVLYDT 163 (376)
T ss_dssp -CTTCCEEEEESSHHHH-HHHHHHHHTTCCEEEEECCTTCCCCHHHHHTT-------TTSCCCEEEEESEETTTTEECCH
T ss_pred -CCCCeEEEEeCChhhH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHh-------hccCceEEEEecccCCcceecCH
Confidence 8999 77776544442 2334444445 556665556777776653 34679999999999999999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|.++|+ ++|+++|+|++++.+..++++..+++|++++|+||++++|.|+|++++++++++.+.+...
T Consensus 164 ~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~ 232 (376)
T 3f0h_A 164 MMIGEFCK-----------KNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKV 232 (376)
T ss_dssp HHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCC
T ss_pred HHHHHHHH-----------HcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCC
Confidence 99999999 8999999999999988877776677999999999999978899999999988766543211
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
.+.. .................+++...++++.++++.+...+ ..+ ++..++++++.+.|+++ +
T Consensus 233 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------~ 298 (376)
T 3f0h_A 233 RTMY-------FDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-------P 298 (376)
T ss_dssp CCST-------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-------S
T ss_pred Ccee-------ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-------C
Confidence 1100 00000000001112244667777788888888877652 222 88888999999999887 5
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
+++..+. ....++.+...+. +..++.+.|.++ ||.+++|.. .
T Consensus 299 ~~~~~~~------~~~~~~~~~~~~~-----~~~~l~~~l~~~~gi~v~~g~~----~---------------------- 341 (376)
T 3f0h_A 299 FELVSES------PANGVTSVHPTTA-----NAYDIFLKLKDEYGIWICPNGG----E---------------------- 341 (376)
T ss_dssp EEECCSS------BBTTEEEEEESSS-----CHHHHHHHHHHHSSEECEECCG----G----------------------
T ss_pred CccCccc------cCceEEEEeCCCC-----CHHHHHHHHHHhCCEEEecCcc----c----------------------
Confidence 7776542 2244555543222 234577777776 999987621 0
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++.++|++|+++++++|++++.+.
T Consensus 342 ---------~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 342 ---------MKDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp ---------GTTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ---------cCCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 013789999999999999999999999987643
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=258.25 Aligned_cols=336 Identities=13% Similarity=0.146 Sum_probs=233.5
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccC-------CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSH-------PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~n-------p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
.+|+++++..++++.+.+++.+.+.+. .++ .++....... .+++++++++++|++++...+++|+|+|
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~~~~i~~t~g~t 78 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDY-QHTGMSIMEMSHRGAVYEAV----HNEAQARLLALLGNPTGYKVLFIQGGAS 78 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHTTCCSSEEEEEESSHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhh-hhcCccccccCCCcHHHHHH----HHHHHHHHHHHhCCCCCcEEEEECCCch
Confidence 578999999999999999998766432 111 1111223333 7899999999999975411257889999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcch--hhHHHHhhccc-eEEcCch--hh--hcchhhhhhhhhhhhhcCCCccEEE
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSV--LGMRELVKTNQ-IYSFSVD--DA--RNMLNEFKESQENVENMRHSNSLFV 206 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~--~~~~~~~~~~g-~v~~~~~--~~--~~~~~~~~~l~~~~~~~~~~t~lv~ 206 (815)
+|+.+++.++. ++|| +++....|.+. ....+..+ .. .++++.+ .. .+.+++. ++++|++|+
T Consensus 79 ~a~~~~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~---------i~~~t~~v~ 147 (362)
T 2c0r_A 79 TQFAMIPMNFL-KEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ---------LQDNAAYLH 147 (362)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC---------CCTTEEEEE
T ss_pred HHHHHHHHhcC-CCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc---------cCCCcCEEE
Confidence 99999999998 8999 76665544332 12223333 33 5666531 11 2222221 246799999
Q ss_pred EecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEE
Q psy16512 207 YPAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 207 i~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l 285 (815)
+++++||||.. .|+++| +|+++++|++|+.+..++++..+ |++++|+||++| |+|+|++
T Consensus 148 ~~~~~n~tG~~~~~l~~i-----------------~~~~vivD~a~~~~~~~~~~~~~--d~~~~s~~K~~g-~~G~G~l 207 (362)
T 2c0r_A 148 LTSNETIEGAQFKAFPDT-----------------GSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLG-PSGVTVV 207 (362)
T ss_dssp EESEETTTTEECSSCCCC-----------------TTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTC-CSSCEEE
T ss_pred EeCCcCccceeccccccc-----------------CCCEEEEEChhhccCCccchhHC--cEEEEecccccc-CcCcEEE
Confidence 99999999996 555554 37999999999999888776554 999999999998 8899999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYT 362 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l 362 (815)
++++++++.+.+.... . .++.. ........+|++...++++.++++.+... + .. .++.+++++++
T Consensus 208 ~~~~~~~~~l~~~~~~--~-------~~~~~---~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l 275 (362)
T 2c0r_A 208 IVREDLVAESPKHLPT--M-------LRYDT---YVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLI 275 (362)
T ss_dssp EEEGGGSSSCCTTSCG--G-------GCHHH---HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHhhccccCch--H-------HhHHH---HhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999887666432100 0 00000 00012345789999999999999987664 2 22 38999999999
Q ss_pred HHHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCC
Q psy16512 363 YFYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.+.|+++ +++ +++.+.. ...+++++|.+++. .+..++.+.|.++||.+++|..+
T Consensus 276 ~~~L~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~L~~~gi~~~~g~~~----------- 330 (362)
T 2c0r_A 276 YDAIDQS------GGFYRGCVDVD----SRSDMNITFRLASE----ELEKEFVKASEQEGFVGLKGHRS----------- 330 (362)
T ss_dssp HHHHHTS------TTSSEESSCGG----GBCSSEEEEECSCH----HHHHHHHHHHHHTTEESCBCCTT-----------
T ss_pred HHHHHHc------CCccccCCChH----HcCCcEEEEEcCCc----chHHHHHHHHHHCCCeeccCCCC-----------
Confidence 9999987 324 6654321 12356778877531 12345788899999988765321
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.+|+|++.+++++|+++++++|++++.
T Consensus 331 --------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 331 --------------------------VGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp --------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 15699999999999999999999998764
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=256.36 Aligned_cols=314 Identities=11% Similarity=0.065 Sum_probs=227.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHHHHhhccc----eEEcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMRELVKTNQ----IYSFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~~~~~~~g----~v~~~~~~ 180 (815)
++++++++++++|.+.+...+++|+|+++|+.+++.++. ++|| +++.. ..|++.+ ...+...| .++++.++
T Consensus 39 ~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~-~~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~ 115 (366)
T 1m32_A 39 VEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVLIVSNGAYGARM--VEMAGLMGIAHHAYDCGEVA 115 (366)
T ss_dssp HHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEEEEESSHHHHHH--HHHHHHHTCCEEEEECCTTS
T ss_pred HHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc-CCCCeEEEEeCCCccHHH--HHHHHHhCCceEEEeCCCCC
Confidence 889999999999942221249999999999999999997 8888 66554 5666532 22233334 56666655
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
..+++.++++++ + .+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+..++++
T Consensus 116 ~~d~~~l~~~l~---~--~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~ 179 (366)
T 1m32_A 116 RPDVQAIDAILN---A--DPTISHIAMVHSETTTGMLNPIDEVGALAH-----------RYGKTYIVDAMSSFGGIPMDI 179 (366)
T ss_dssp CCCHHHHHHHHH---H--CTTCCEEEEESEETTTTEECCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCT
T ss_pred CCCHHHHHHHHh---c--CCCeEEEEEecccCCcceecCHHHHHHHHH-----------HcCCEEEEECCccccCcCccc
Confidence 577777776553 1 135889999999999999999999999999 899999999999988887777
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCc--cccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGL--FEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~gt~~~~~~~al 338 (815)
..+++|++++|+||++++|.|+|++++++++++.+.+...+.. ......+... ......++++...++++
T Consensus 180 ~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 251 (366)
T 1m32_A 180 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS--------LDLYAQWRCMEDNHGKWRFTSPTHTVLAF 251 (366)
T ss_dssp TTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCST--------TCHHHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred cccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcc--------ccHHHHHhhhcccCCCCCCCCCHHHHHHH
Confidence 7778999999999988658899999999988766643210000 0000000000 00122358888989899
Q ss_pred HHHHHHHHhhh--hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 339 KYGFDTMEKKR--KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 339 ~~al~~l~~~~--~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++++.+...+ ..+ ++.+++++++.+.|+++ +++++.+.. ...+.++++.++... ..+..++.+
T Consensus 252 ~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~~ 318 (366)
T 1m32_A 252 AQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-------GFNTLLDDE----LHSPIITAFYSPEDP--QYRFSEFYR 318 (366)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGG----GBCSSEEEEECCCCT--TCCHHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC-------CCeeccCch----hcCceEEEEEcCccC--CCCHHHHHH
Confidence 89998876653 233 88899999999999886 455554321 122458888876310 123456888
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.+++|..|. .+++|++++.+++++|+++++++|++++
T Consensus 319 ~l~~~gi~v~~~~~~~------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~ 362 (366)
T 1m32_A 319 RLKEQGFVIYPGKVSQ------------------------------------SDCFRIGNIGEVYAADITALLTAIRTAM 362 (366)
T ss_dssp HHHHTTEECEECCCSS------------------------------------SCEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHCCEEEECCcCCC------------------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 8888899998876541 3789999999999999999999999876
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 363 ~ 363 (366)
T 1m32_A 363 Y 363 (366)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=253.08 Aligned_cols=329 Identities=15% Similarity=0.033 Sum_probs=237.3
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.|+.+. .+.+++.+.+++.+.+.. .+.++......... .+++++++++++|+++++ |++|+|+++|+.+++.
T Consensus 33 ~~~~~~-~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--i~~~~ggt~a~~~~~~ 104 (397)
T 3f9t_A 33 NIFGSM-CSNVLPITRKIVDIFLET-NLGDPGLFKGTKLL----EEKAVALLGSLLNNKDAY--GHIVSGGTEANLMALR 104 (397)
T ss_dssp CBCSCS-CCCCCTHHHHHHHHHTTC-CTTSGGGBHHHHHH----HHHHHHHHHHHTTCTTCE--EEEESCHHHHHHHHHH
T ss_pred CeEEEe-cCCCcHHHHHHHHHHHhh-cCCCcccChhHHHH----HHHHHHHHHHHhCCCCCC--EEEecCcHHHHHHHHH
Confidence 344544 344567778877766543 23444422233444 778999999999998876 9999999999999999
Q ss_pred hhccC------------CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEE
Q psy16512 143 YFEFN------------EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVY 207 (815)
Q Consensus 143 al~~~------------~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i 207 (815)
++... +|| |+++...|+++.......+... .++.+.++.++++.++++++ + ++++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-------~~~~~~v~~ 177 (397)
T 3f9t_A 105 CIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVE-------DYDVDGIIG 177 (397)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHH-------HSCCCEEEE
T ss_pred HHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHh-------hcCCeEEEE
Confidence 98622 378 8899999998776655543332 56666666678888777553 3 7899999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--------------CCCCCCCCCcEEEEccc
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--------------MLDLKQHQPDFISISFY 273 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--------------~~dl~~~~~D~vv~S~~ 273 (815)
++++||||.+.|+++|.++|+ ++|+++|+|++++.+.. ++++.. ++|+++.|+|
T Consensus 178 ~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 245 (397)
T 3f9t_A 178 IAGTTELGTIDNIEELSKIAK-----------ENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPH 245 (397)
T ss_dssp EBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTT
T ss_pred ECCCCCCCCCCCHHHHHHHHH-----------HhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccc
Confidence 999999999999999999999 89999999999875432 444445 7899999999
Q ss_pred cccccCCcceEEEEecccc-cccC---cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 274 KMFGYPTGLGALIVKQKSA-HVLN---KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 274 K~~g~p~G~G~l~~~~~~~-~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|++++|.++|+++++++.+ +.+. +.+.++. .....++.+.....++.+++..+...+
T Consensus 246 K~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~ 306 (397)
T 3f9t_A 246 KMGHCPIPSGGILFKDIGYKRYLDVDAPYLTETR-------------------QATILGTRVGFGGACTYAVLRYLGREG 306 (397)
T ss_dssp TTTCCCSSCEEEEESSGGGGGGTCEECTTSSSSE-------------------ECSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEeCHHHHHhhccCCccccCCC-------------------ccccccccccchHHHHHHHHHHHhHHH
Confidence 9997677899999987643 3331 1111111 112235555556666667777665433
Q ss_pred h-h-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 350 K-S-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 350 ~-~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
. . .++..++++++.+.|+++ +++++.+. .++++.|.++. ..++.+.|.++||.++++
T Consensus 307 ~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-------~~~~~~~~~~~-------~~~~~~~l~~~gi~v~~~ 365 (397)
T 3f9t_A 307 QRKIVNECMENTLYLYKKLKEN-------NFKPVIEP-------ILNIVAIEDED-------YKEVCKKLRDRGIYVSVC 365 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCC-------SSSEEEEECTT-------HHHHHHHHHHTTCBCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-------CCEEEcCC-------CccEEEEEeCC-------HHHHHHHHHhCCeEEecc
Confidence 2 2 278889999999999887 45555433 26777777643 235788888889998875
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.. .+++|++++.+++++|+++++++|++++.
T Consensus 366 ~~--------------------------------------~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 366 NC--------------------------------------VKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp SS--------------------------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CC--------------------------------------CCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 31 27899999999999999999999998764
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=256.79 Aligned_cols=312 Identities=12% Similarity=0.118 Sum_probs=221.0
Q ss_pred HHHHHHHHHhHcCCC----CCceeEEecCCchhhHHHHHhhhcc--CCCc-EEEecCCCcchhhHHHHhhccc----eEE
Q psy16512 107 IDQMRTKILQYFNTD----SDHYSVIFTSGATSAIKTVSEYFEF--NEGS-FIYLTDNHTSVLGMRELVKTNQ----IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g~~----~~~~~iv~t~g~t~al~~~~~al~~--~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~ 175 (815)
..+++++++++++.. +++ |++|+|+|+|+.+++.++.. ++|| +++....+.... +...+...| .++
T Consensus 40 ~~~~~~~l~~~~~~~~~~~~~~--v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~-~~~~~~~~g~~~~~v~ 116 (385)
T 2bkw_A 40 FQRVLKNTRAVFKSAAASKSQP--FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVR 116 (385)
T ss_dssp HHHHHHHHHHHTTCCGGGTCEE--EEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCCce--EEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHH-HHHHHHHcCCceEEEe
Confidence 667888888888764 344 99999999999999999852 6788 666644322211 123334445 455
Q ss_pred c-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC--CeEEEEecccc
Q psy16512 176 F-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATY 252 (815)
Q Consensus 176 ~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~ 252 (815)
+ +.++.++++.++++++ ..++++|++++++||||.++|+++|.++|+ ++ |+++|+|++++
T Consensus 117 ~~~~~~~~d~~~l~~~l~------~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~~~li~D~a~~ 179 (385)
T 2bkw_A 117 PLKIGESVPLELITEKLS------QNSYGAVTVTHVDTSTAVLSDLKAISQAIK-----------QTSPETFFVVDAVCS 179 (385)
T ss_dssp CSSTTSCCCHHHHHHHHH------HSCCSEEEEESEETTTTEECCHHHHHHHHH-----------HHCTTSEEEEECTTT
T ss_pred cCCCCCCCCHHHHHHHHh------cCCCCEEEEEccCCCcCeEcCHHHHHHHHH-----------hhCCCCEEEEECccc
Confidence 5 5455567777776553 126899999999999999999999999999 78 99999999999
Q ss_pred cCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc-ccCc------ccccCceEEEEecCCcccccccCc--cc
Q psy16512 253 CGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH-VLNK------TFYGGGTVKISMANENFHIKKDGL--FE 323 (815)
Q Consensus 253 ~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~-~l~~------~~~g~~~~~~~~~~~~~~~~~~~~--~~ 323 (815)
.+..++++..+++|++++|+||++++|+|+|+++++++.++ .+++ ..+++.. ..+....... ..
T Consensus 180 ~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 252 (385)
T 2bkw_A 180 IGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSL-------RRWTPIMENYEAGK 252 (385)
T ss_dssp TTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCH-------HHHHHHHHHHHTTC
T ss_pred cCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecH-------HHHhhHHHhhhccC
Confidence 88887788777899999999998776889999999988765 5531 1111100 0000000000 01
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHH-HhccccCCCCcEEEcCCCCCCCCC-cccceEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYF-KQLSYSNGQPLVELYHDTDYGESK-YQGNIVNFN 399 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L-~~l~~~~~~p~~~l~~~~~~~~~~-~~~~i~~f~ 399 (815)
....++++..+++++.++++.+...+. . .++.+++++++.+.| +++ +++++.+.. .. ..+++++|.
T Consensus 253 ~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-------g~~~~~~~~---~~~~~~~~~~~~ 322 (385)
T 2bkw_A 253 GAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-------QLTSVSRYP---SNMSAHGLTAVY 322 (385)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-------CCEESSCSS---STTBCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-------CceecccCc---ccccCCceEEEe
Confidence 122468899999999899988765432 2 388899999999999 776 567765321 01 247888888
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe-ccC-
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS-YGH- 477 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs-~g~- 477 (815)
+++ ..++.+.|.++||.+++|..+.. ..+++|+| ++.
T Consensus 323 ~~~-------~~~~~~~l~~~gi~v~~g~~~~~----------------------------------~~~~iRis~~~~~ 361 (385)
T 2bkw_A 323 VAD-------PPDVIAFLKSHGVVIAGGIHKDI----------------------------------GPKYIRIGHMGVT 361 (385)
T ss_dssp CSC-------HHHHHHHHHHTTEECBCCCCTTT----------------------------------GGGEEEECCCGGG
T ss_pred cCC-------HHHHHHHHHHCCeEEeCCCCccc----------------------------------CCCEEEEEccccc
Confidence 753 23577888889999998754211 13789999 763
Q ss_pred --CCCHHHHHHHHHHHHHHHh
Q psy16512 478 --ASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 478 --~~t~edi~~lv~~L~~~~~ 496 (815)
.++++|+++++++|++++.
T Consensus 362 ~~~~~~e~i~~~~~~l~~~~~ 382 (385)
T 2bkw_A 362 ACNKNLPYMKNCFDLIKLALQ 382 (385)
T ss_dssp TSSTTCTHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 4799999999999998764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=244.84 Aligned_cols=322 Identities=11% Similarity=0.085 Sum_probs=230.5
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC-CCCceeEEecCCchhhHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT-DSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~-~~~~~~iv~t~g~t~al~ 138 (815)
.++|+.+... ..++.+.+++.+.+.. .....+. .. ..++|+++++++|+ ++++ |++|+|+|+|+.
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~l~~~la~~~g~~~~~~--i~~~~g~t~a~~ 99 (367)
T 3euc_A 32 LVKLDAMENPYRLPPALRSELAARLGEVALNRYPV------PS----SEALRAKLKEVMQVPAGME--VLLGNGSDEIIS 99 (367)
T ss_dssp CEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC------CC----HHHHHHHHHHHHTCCTTCE--EEEEEHHHHHHH
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----HHHHHHHHHHHhCCCCcce--EEEcCCHHHHHH
Confidence 4555554443 3567788887776653 1122222 12 78899999999999 5555 999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCc
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSG 215 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG 215 (815)
+++.++. ++|| |++....|+++....+..+... .++++.+..++++.++++++ + ++++|++++++||||
T Consensus 100 ~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-------~~~~~~v~~~~~~nptG 171 (367)
T 3euc_A 100 MLALAAA-RPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMA-------EHQPAIVYLAYPNNPTG 171 (367)
T ss_dssp HHHHHTC-CTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHH-------HHCCSEEEEESSCTTTC
T ss_pred HHHHHHc-CCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhh-------ccCCCEEEEcCCCCCCC
Confidence 9999997 8999 8888888887765544433222 66777666678888777553 3 689999999999999
Q ss_pred cccChHHHHHHhhccccccccccCCC--CeEEEEecccccCCC--C-CCCCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSRS--NCFVLLDAATYCGSN--M-LDLKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~~--gi~vivD~a~~~g~~--~-~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
.++|.+++.++++ .|+++ |+++|+|++++.... . ..+...+.++++.|+||+ + ++| +|+++++
T Consensus 172 ~~~~~~~l~~i~~--------~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~-~~G~r~G~~~~~ 241 (367)
T 3euc_A 172 NLFDAADMEAIVR--------AAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-G-LAGIRLGYVAGD 241 (367)
T ss_dssp CCCCHHHHHHHHH--------HTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-T-SCSCCEEEEEEC
T ss_pred CCCCHHHHHHHHH--------hhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-c-ccccCceeeeeC
Confidence 9998777766655 34489 999999999764221 1 122334566889999999 6 445 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.... ..++.+..+..++.++++.........++..++++++.+.|++
T Consensus 242 ~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 295 (367)
T 3euc_A 242 PQWLEQLDKVR--------------------------PPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMAA 295 (367)
T ss_dssp HHHHHHHGGGC--------------------------CSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 87766553221 1235677777777777766222222338888999999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ |+++++.+. ++++++.++ +..++.+.|.++||.+++|..|...
T Consensus 296 ~------~g~~~~~~~--------~~~~~~~~~-------~~~~l~~~l~~~gi~v~~~~~~~~~--------------- 339 (367)
T 3euc_A 296 H------GGVTVFPSA--------ANFLLARVP-------DAAQTFDRLLARKVLIKNVSKMHPL--------------- 339 (367)
T ss_dssp S------TTCEECCCS--------SSEEEEECS-------CHHHHHHHHHTTTEECEECGGGCGG---------------
T ss_pred C------CCcEECCCC--------CeEEEEECC-------CHHHHHHHHHHCCeEEEECCccCCC---------------
Confidence 7 678765332 667777765 2345888899999999988765421
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++ +++|+++++++|++++.
T Consensus 340 ------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 340 ------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred ------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1379999987 89999999999998763
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-26 Score=257.53 Aligned_cols=316 Identities=9% Similarity=0.076 Sum_probs=222.4
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc------eEEcCc
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ------IYSFSV 178 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g------~v~~~~ 178 (815)
.++++++.+++++|++ + .++||+|+|+|+++++..+ .+|| +|+....|++. .+...+...| .++.+.
T Consensus 36 ~~~~~~~~l~~~~~~~-~--~v~~~~sgt~a~~~~~~~~--~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 36 VMNDLLSNLKTVYNAE-A--AVIIPGSGTYGMEAVARQL--TIDEDCLIIRNGWFSY-RWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHHHHTCS-E--EEEEESCHHHHHHHHHHHH--CTTCEEEEEECSHHHH-HHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHHHhCCC-C--EEEEcCChhHHHHHHHHhC--CCCCeEEEEeCCchhH-HHHHHHHHhCCCCceEEEeccc
Confidence 3899999999999987 3 4999999999999988655 6888 88888777653 2333333222 344432
Q ss_pred h---------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEE
Q psy16512 179 D---------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVL 246 (815)
Q Consensus 179 ~---------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vi 246 (815)
. +..+++.++++++ .+++++|++++++|+||.+.| +++|.++|+ ++|+++|
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~-----------~~~~~li 172 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIK------EDKSAIVYAPHVETSSGIILSEEYIKALSEAVH-----------SVGGLLV 172 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHH------HHTCSEEEEESEETTTTEECCHHHHHHHHHHHH-----------HTTCEEE
T ss_pred cccccccCCCCCCCHHHHHHHHh------hcCCcEEEEEeecCCCceeCCHHHHHHHHHHHH-----------HcCCEEE
Confidence 1 1356666665442 136899999999999999999 889999998 8999999
Q ss_pred EecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccc---cccCccc
Q psy16512 247 LDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI---KKDGLFE 323 (815)
Q Consensus 247 vD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~~~~~ 323 (815)
+|++++ |..++++..+++|++++|+||++++|.|+|++++++++++.+.+....... .....|.. ..... .
T Consensus 173 ~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~g-~ 246 (379)
T 3ke3_A 173 IDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFS----LDLKQWLTIMRAYENG-G 246 (379)
T ss_dssp EECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCST----TCHHHHHHHHHHHHTT-S
T ss_pred EEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCcee----ecHHHHHHHHHhhhcc-C
Confidence 999999 888888777789999999999998898999999999887665432100000 00000000 00000 0
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
+...+|+|...++++.++++.+...+. .+ ++.+++++++++.|+++ +++++.+.. ...+.++.+...
T Consensus 247 ~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~-------g~~~~~~~~----~~~~~i~~~~~~ 315 (379)
T 3ke3_A 247 HAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDK-------GIESVAAEG----FEAPGVVVSYTE 315 (379)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-------TCCBSBCTT----CBCSSEEEEECS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHc-------CCEecCCcc----ccCceEEEEccC
Confidence 112358999999999999999887642 22 88899999999999987 666665432 122334444432
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
+. . ....+.|.++||.+++|..|..+.. ...+.+|+|++.++|+
T Consensus 316 ~~---~---~~~~~~L~~~Gi~v~~g~~~~~~~~------------------------------~~~~~lRis~~~~~t~ 359 (379)
T 3ke3_A 316 RD---D---MHKGSAFAEAGLQIAAGVPLKVGEP------------------------------DNFKTFRLGLFGLDKL 359 (379)
T ss_dssp CH---H---HHSSHHHHHTTCCCEECCCCSSCCC------------------------------TTCCEEEEECCSHHHH
T ss_pred Cc---c---hHHHHHHHHCCeEEeCCcccccccc------------------------------CcCCEEEEeCCcCCCH
Confidence 21 1 0124677889999998876542110 1137899999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy16512 482 DDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 482 edi~~lv~~L~~~~~~ 497 (815)
+||++++++|++++.+
T Consensus 360 ~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 360 TDIDGTVERFEKALDE 375 (379)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987643
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=242.86 Aligned_cols=321 Identities=11% Similarity=0.076 Sum_probs=230.1
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
.+.|+.+... ..++.+.+++.+.+.. ...+|. .. ..++|+++++++|+++++ |++|+|+++|+.++
T Consensus 18 ~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--i~~~~g~~~a~~~~ 84 (354)
T 3ly1_A 18 PIRINFNENPLGMSPKAQAAARDAVVK-ANRYAK------NE----ILMLGNKLAAHHQVEAPS--ILLTAGSSEGIRAA 84 (354)
T ss_dssp CEECSSCCCSSCCCHHHHHHHHHTGGG-TTSCCH------HH----HHHHHHHHHHHTTSCGGG--EEEESHHHHHHHHH
T ss_pred eEEccCCCCCCCCCHHHHHHHHHHHhh-CcCCCC------Cc----hHHHHHHHHHHhCCChHH--EEEeCChHHHHHHH
Confidence 3445544433 3567777777665542 222221 23 789999999999998887 99999999999999
Q ss_pred HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 141 SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 141 ~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+.++. ++|| |++....|+++....+..+... .++.+.+..++++.++++++ ..+++++|++++++||||.++
T Consensus 85 ~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~~~v~l~~p~nptG~~~ 158 (354)
T 3ly1_A 85 IEAYA-SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVA-----AYSGPSIVYLVNPNNPTGTIT 158 (354)
T ss_dssp HHHHC-CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHH-----TCSSCEEEEEESSCTTTCCCC
T ss_pred HHHHh-CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhc-----cCCCCCEEEEeCCCCCcCCCc
Confidence 99997 8998 8888888877655444332222 55566556677777776443 015799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC---CC----CCC-CCcEEEEccccccccCCc--ceEEEEe
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML---DL----KQH-QPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---dl----~~~-~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
|.+++.++++ .| ++|+++|+|++++.....- .. ... +.++++.|+||+|| ++| +|+++++
T Consensus 159 ~~~~l~~l~~--------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~ 228 (354)
T 3ly1_A 159 PADVIEPWIA--------SK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHA-MAGMRVGYAVAH 228 (354)
T ss_dssp CHHHHHHHHH--------TC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTC-CGGGCCEEEECC
T ss_pred CHHHHHHHHH--------hC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhcc-ChhhhheeeecC
Confidence 9999999999 34 5999999999987433211 11 122 55689999999998 445 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.... ..++++.....++.++++.........++..++++++.+.|++
T Consensus 229 ~~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 282 (354)
T 3ly1_A 229 PTVIALMGRYV--------------------------AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALED 282 (354)
T ss_dssp HHHHHHHGGGT--------------------------TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766553221 1246777888887777765432322337888899999999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++.++.+ .++++++.++. +..++.+.|.++||.++ |.+|..
T Consensus 283 ~-------~~~~~~~--------~~~~~~~~~~~------~~~~~~~~l~~~gi~v~-g~~~~~---------------- 324 (354)
T 3ly1_A 283 L-------KLPYLPS--------EGNFVFHQLVV------PLKDYQTHMADAGVLIG-RAFPPA---------------- 324 (354)
T ss_dssp H-------TCCBCCC--------CSSEEEEECSS------CHHHHHHHHHHTTEECC-CCCTTC----------------
T ss_pred C-------CCeECCC--------CceEEEEECCC------CHHHHHHHHHHCCEEEe-ecCCCC----------------
Confidence 6 4554422 26777777764 23457888888999998 765420
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ +++|+++++++|++++..
T Consensus 325 -------------------~~~iRis~~---~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 325 -------------------DNWCRISLG---TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp -------------------TTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred -------------------CCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence 378999987 899999999999998754
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=247.98 Aligned_cols=335 Identities=13% Similarity=0.122 Sum_probs=233.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCCh--------hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc-
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN--------SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA- 133 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~--------~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~- 133 (815)
+|+++.+..++|+.+.+++.+.+... .|++.. ...... ++++++++++++|++. .++|++|+|+
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~l~~~la~~~g~~~-~~~v~~~~g~g 76 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF--NDTQMSVMELSHRSQSYEEV----HEQAQNLLRELLQIPN-DYQILFLQGGA 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS--TTSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHHTCCT-TEEEEEESSHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh--ccccccccccCCCCHHHHHH----HHHHHHHHHHHhCCCC-CceEEEECCcc
Confidence 57777888888899999887765431 233321 222333 8899999999999962 2349999999
Q ss_pred hhhHHHHHhhhccCC---Cc-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhh-hhhhhhhhcCCCccEEE
Q psy16512 134 TSAIKTVSEYFEFNE---GS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFK-ESQENVENMRHSNSLFV 206 (815)
Q Consensus 134 t~al~~~~~al~~~~---gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~-~l~~~~~~~~~~t~lv~ 206 (815)
|+|+.+++.++. .+ |+ ++++..+|++.. .....+ .. .+++++ ++..+++++++ ++ +++|++|+
T Consensus 77 t~al~~~~~~l~-~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i-------~~~~k~v~ 146 (360)
T 1w23_A 77 SLQFTMLPMNLL-TKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQL-------NENDAYLH 146 (360)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCC-------CTTEEEEE
T ss_pred hHHHHHHHHHhc-CCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhcc-------CCCCCEEE
Confidence 999999999987 44 55 455555555422 222222 22 566664 33456666654 33 46799999
Q ss_pred EecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 207 YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 207 i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
+++++||||.++| ++++ ++|+++|+|++|+.+..++++..+ |++++|+||+|| |+|+|+++
T Consensus 147 ~~~~~nptG~~~~-----~i~~-----------~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~-~~G~G~~~ 207 (360)
T 1w23_A 147 ITSNNTIYGTQYQ-----NFPE-----------INHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLG-PSGVTVVI 207 (360)
T ss_dssp EESEETTTTEECS-----SCCC-----------CCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTS-CTTCEEEE
T ss_pred EeCCCCCcceecc-----cccc-----------cCCceEEEechhhcCCCCcCcccC--CEEEEEcccccC-CCCcEEEE
Confidence 9999999999987 4455 689999999999998877766544 899999999999 88999999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-h-hh-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-R-KS-FTNAFELSQYTY 363 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~-~~-~~~~~~l~~~l~ 363 (815)
++++.++.+.+.. ++.. .+.. . ...++..++++...++++.++++.+... + .. .++.+++++++.
T Consensus 208 ~~~~~~~~~~~~~-~~~~--------~~~~-~--~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~ 275 (360)
T 1w23_A 208 VKKDLLNTKVEQV-PTML--------QYAT-H--IKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIY 275 (360)
T ss_dssp EEHHHHCSCCTTC-CGGG--------CHHH-H--HHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EcHHHHhhcccCC-cchh--------hhhh-h--hhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9998876665432 1110 0000 0 0023556789999999999999887654 2 22 388899999999
Q ss_pred HHHHhccccCCCCcE-EEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 364 FYFKQLSYSNGQPLV-ELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
+.|+++ +++ ..+.+.. ...+.+++|.+++. .+..++.+.|.++||.+++|..+
T Consensus 276 ~~L~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~l~~~gi~~~~~~~~------------ 329 (360)
T 1w23_A 276 DTIDES------NGFYVGHAEKG----SRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHRS------------ 329 (360)
T ss_dssp HHHHTT------TTSSEESSCGG----GBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCTT------------
T ss_pred HHHHHc------cCcccccCCch----hccCcEEEEEcCCC----ccHHHHHHHHHHCCeeeecCCCC------------
Confidence 999887 443 4331110 11234888877531 11234677788899998765320
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++.+++++++++++++|++++.
T Consensus 330 -------------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~ 358 (360)
T 1w23_A 330 -------------------------VGGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp -------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence 26899999999999999999999998764
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-25 Score=242.90 Aligned_cols=320 Identities=14% Similarity=0.138 Sum_probs=228.9
Q ss_pred hhhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+.... .++.+.+++.+.+. ....+|+ .. ..++|+++++++|+++++ |++|+|+++|+.+
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~------~~----~~~lr~~la~~~~~~~~~--v~~~~g~t~a~~~ 99 (363)
T 3ffh_A 33 KITKLSSNENPLGTSKKVAAIQANSSV-ETEIYPD------GW----ASSLRKEVADFYQLEEEE--LIFTAGVDELIEL 99 (363)
T ss_dssp CCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC--------------CHHHHHHHHHHHTCCGGG--EEEESSHHHHHHH
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcCCC------cc----hHHHHHHHHHHhCCChhh--EEEeCCHHHHHHH
Confidence 345566554443 45667776655332 1222222 22 688999999999998887 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++.++. ++|| |+++...|+++....+..+... .++.++++.++++.+++++ ++++++|++++++||||.+
T Consensus 100 ~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~p~nptG~~ 171 (363)
T 3ffh_A 100 LTRVLL-DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAI-------DEKTTIVWICNPNNPTGNY 171 (363)
T ss_dssp HHHHHC-STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHC-------CTTEEEEEEESSCTTTCCC
T ss_pred HHHHHc-cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhc-------ccCCCEEEEeCCCCCcCCC
Confidence 999997 8898 8888888877655544443332 6677766667777776644 4679999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---C--CCC-CCCCCcEEEEccccccccCCcc--eEEEEec
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---M--LDL-KQHQPDFISISFYKMFGYPTGL--GALIVKQ 289 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~--~dl-~~~~~D~vv~S~~K~~g~p~G~--G~l~~~~ 289 (815)
+|++++.++++ .|++ |+++|+|++++.... . ... ...+.++++.|++|++| ++|+ |++++++
T Consensus 172 ~~~~~l~~l~~--------~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~ 241 (363)
T 3ffh_A 172 IELADIQAFLD--------RVPS-DVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYG-LASARVGYGIADK 241 (363)
T ss_dssp CCHHHHHHHHT--------TSCT-TSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTC-CSSCCCEEEEECH
T ss_pred cCHHHHHHHHH--------hCCC-CcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhc-CchhceeeeecCH
Confidence 99999999998 2334 999999999873221 1 111 12234578889999998 6675 9999988
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++++.+.+.. ..++.+..+..++.++++.........++..++++++.+.|+++
T Consensus 242 ~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 295 (363)
T 3ffh_A 242 EIIRQLNIVR--------------------------PPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF 295 (363)
T ss_dssp HHHHHHHHTC--------------------------CSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8776553221 13467778888877777643222222378888999999999985
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++++++.+. ++++++.++. +..++.+.|.++||.+++|..+..
T Consensus 296 ------~g~~~~~~~--------~~~~~~~~~~------~~~~~~~~l~~~gi~v~~g~~~~~----------------- 338 (363)
T 3ffh_A 296 ------EKVKLYPAN--------GNFVLIDLGI------EAGTIFSYLEKNGYITRSGAALGF----------------- 338 (363)
T ss_dssp ------TTCEECCCC--------SSEEEEECSS------CHHHHHHHHHHTTEECEETTTTTC-----------------
T ss_pred ------CCceECCCC--------CeEEEEECCC------CHHHHHHHHHHCCeEEEeCccCCC-----------------
Confidence 477776432 5777777753 234588888889999998765321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|+|++ +++|+++++++|++++
T Consensus 339 ------------------~~~iRis~~---~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 339 ------------------PTAVRITIG---KEEDNSAVIALLEKLL 363 (363)
T ss_dssp ------------------TTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred ------------------CCeEEEECC---CHHHHHHHHHHHHHhC
Confidence 378999998 8999999999998753
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=250.23 Aligned_cols=340 Identities=11% Similarity=0.031 Sum_probs=237.7
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC--CCc-eeEEecCCchhhHHHHHhhhccC
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD--SDH-YSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~--~~~-~~iv~t~g~t~al~~~~~al~~~ 147 (815)
+.+++.+.+++.+.+.. .+.+++.......+ .+++++++++++|++ +++ ...++|+|+|+|+.+++.++...
T Consensus 66 ~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~l----e~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~ 140 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINK-NYVDMDEYPVTTEL----QNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRK 140 (502)
T ss_dssp CCCCHHHHHHHHHTTTC-BTTCTTTCHHHHHH----HHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc-CCCChhcChhHHHH----HHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHH
Confidence 55667777777665443 33445443444444 678999999999998 443 12356999999999998887521
Q ss_pred -------CC------cEEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 148 -------EG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 148 -------~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+| .+|++..+|+++.......+... .++++++ +.++++.+++++ +++|++|++++++|
T Consensus 141 ~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-------~~~t~~v~~~~~~n 213 (502)
T 3hbx_A 141 WQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMV-------DENTICVAAILGST 213 (502)
T ss_dssp HHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBTTBCSCCHHHHHHHC-------CTTEEEEEEEBSCT
T ss_pred HhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCCCcCcCCHHHHHHHH-------hhCCEEEEEecCCC
Confidence 14 38888889988766555443222 5566554 566777776644 46799999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCC------CeEEEEecccccC-------CCCCCCCCCCCcEEEEccccccccC
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRS------NCFVLLDAATYCG-------SNMLDLKQHQPDFISISFYKMFGYP 279 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~------gi~vivD~a~~~g-------~~~~dl~~~~~D~vv~S~~K~~g~p 279 (815)
+||.+.|+++|.++|+ ++ |+++|||++++.+ ..+.++...++|++++|+||++++|
T Consensus 214 ~tG~~~~l~~I~~ia~-----------~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p 282 (502)
T 3hbx_A 214 LNGEFEDVKLLNDLLV-----------EKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVY 282 (502)
T ss_dssp TTCCBCCHHHHHHHHH-----------HHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCC
T ss_pred CCCcccCHHHHHHHHH-----------HhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCC
Confidence 9999999999999999 66 9999999999843 2344455557899999999999779
Q ss_pred CcceEEEEeccc-cc-cc--CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHH
Q psy16512 280 TGLGALIVKQKS-AH-VL--NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFT 353 (815)
Q Consensus 280 ~G~G~l~~~~~~-~~-~l--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~ 353 (815)
.|+|++++++.. +. .+ .+.+.++.... ....++.+...++++.+++..+...+. .++
T Consensus 283 ~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~-----------------~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~ 345 (502)
T 3hbx_A 283 AGIGWVIWRNKEDLPEELIFHINYLGADQPT-----------------FTLNFSKGSSQVIAQYYQLIRLGHEGYRNVME 345 (502)
T ss_dssp SSCEEEEESSGGGSCGGGCEEECSSSSCEEE-----------------CCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCHHHhhHHhccCcccccCCCCC-----------------ccccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997643 21 11 12233322211 111245555566777777776654332 238
Q ss_pred HHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCch
Q psy16512 354 NAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPG 433 (815)
Q Consensus 354 ~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~ 433 (815)
+..++++++.+.|+++ ++++++.+. ...++++|.+++.. .++..++.+.|.++||.++.... +.
T Consensus 346 ~~~~~a~~l~~~L~~~------~~~~~~~~~------~~~~~v~f~~~~~~--~~~~~~l~~~L~~~Gi~v~~~~~--p~ 409 (502)
T 3hbx_A 346 NCRENMIVLREGLEKT------ERFNIVSKD------EGVPLVAFSLKDSS--CHTEFEISDMLRRYGWIVPAYTM--PP 409 (502)
T ss_dssp HHHHHHHHHHHHHHTT------TCEEECSCS------SSSSEEEEEESSCS--SCCHHHHHHHHHTTTCBCCEEEC--CT
T ss_pred HHHHHHHHHHHHHHhC------CCEEEEeCC------CCceEEEEEecCCC--cCCHHHHHHHHHhCCcEEeeccC--Cc
Confidence 8899999999999998 679998651 13689999987532 23444688999999999864221 11
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.. ....++||+++..+|.+|+++|++.|++++.
T Consensus 410 ~~------------------------------~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 410 NA------------------------------QHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp TC------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred cc------------------------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 00 0137899999999999999999999998764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=242.84 Aligned_cols=318 Identities=14% Similarity=0.144 Sum_probs=229.1
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+... ..++.+.+++.+.+.. ...+++. . ..++|+++++++|+++++ |++|+|+++|+.+
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~------~----~~~lr~~la~~~~~~~~~--v~~~~g~~~a~~~ 97 (365)
T 3get_A 31 EVIKLASNENPFGTPPKAIECLRQNANK-AHLYPDD------S----MIELKSTLAQKYKVQNEN--IIIGAGSDQVIEF 97 (365)
T ss_dssp CCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCCCT------T----CHHHHHHHHHHHTCCGGG--EEEESSHHHHHHH
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCCCC------C----hHHHHHHHHHHhCCCcce--EEECCCHHHHHHH
Confidence 34666655444 3567788888776542 2333331 1 358999999999998877 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
++.++. ++|| |++....|+++.......+... .+++ +.+. .+++.+++++ ++++++|++++++||||.
T Consensus 98 ~~~~l~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l-------~~~~~~v~~~~p~nptG~ 168 (365)
T 3get_A 98 AIHSKL-NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETH-------KDEIKLIFLCLPNNPLGE 168 (365)
T ss_dssp HHHHHC-CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHT-------TTTEEEEEEESSCTTTCC
T ss_pred HHHHHh-CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHh-------CCCCCEEEEcCCCCCCCC
Confidence 999997 8999 8888888877655444433222 4444 3455 7777776644 478999999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccc------cCCCCCCCC----CCCCcEEEEccccccccCCc--ceE
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY------CGSNMLDLK----QHQPDFISISFYKMFGYPTG--LGA 284 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~------~g~~~~dl~----~~~~D~vv~S~~K~~g~p~G--~G~ 284 (815)
++|++++.++++ .| ++|+++|+|++++ .+..+.+.. ..+.++++.|+||+|| ++| +|+
T Consensus 169 ~~~~~~l~~l~~--------~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~ 238 (365)
T 3get_A 169 CLDASEATEFIK--------GV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYG-LGGLRIGY 238 (365)
T ss_dssp CCCHHHHHHHHH--------TS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTS-CTTTCCEE
T ss_pred CcCHHHHHHHHH--------hC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhc-CcchheEE
Confidence 999999999998 34 4699999999987 332222221 2356789999999998 445 799
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYF 364 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~ 364 (815)
+++++++++.+.... ...+++.....++.++++.........++..++++++.+
T Consensus 239 ~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 292 (365)
T 3get_A 239 GIANANIISAFYKLR--------------------------APFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKE 292 (365)
T ss_dssp EEECHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999887766553211 123467777777777776432222233788888999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|+++ +++++.+. ++++++.++.. +..++.+.|.++||.+++|..|.
T Consensus 293 ~l~~~-------g~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~g~~~~------------- 339 (365)
T 3get_A 293 FAKKH-------NIKIIDSY--------TNFITYFFDEK-----NSTDLSEKLLKKGIIIRNLKSYG------------- 339 (365)
T ss_dssp HHHHT-------TCEECCCS--------SSEEEEECSSS-----CHHHHHHHHHTTTEECEECGGGT-------------
T ss_pred HHHhC-------CCEECCCC--------CeEEEEECCCC-----CHHHHHHHHHHCCEEEEECccCC-------------
Confidence 99887 56665432 56777777643 23468888888999999876542
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|+|++ +++|+++++++|++++
T Consensus 340 -----------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 340 -----------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 278999998 8999999999999875
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=246.81 Aligned_cols=344 Identities=11% Similarity=0.010 Sum_probs=233.2
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCc---eeEEecCCchhhHHHHHhhhcc--
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDH---YSVIFTSGATSAIKTVSEYFEF-- 146 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~---~~iv~t~g~t~al~~~~~al~~-- 146 (815)
+.++.+.+.+.+.+.. ...++.......+. .+++++++++++|++.+. ..+++|+|+|+|+.+++.++..
T Consensus 53 ~~~~~v~e~~~~a~~~-~~~~~~~~~~~~~l----~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK-NWIDKEEYPQSAAI----DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC-BTTCTTTCHHHHHH----HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-CCCChhhChhHHHH----HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 3445566655544432 22333333444444 778999999999997642 2489999999999999888751
Q ss_pred -----CCC-----c-EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 147 -----NEG-----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 147 -----~~g-----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.+| + +|++. .|+++......++... .+++++ ++.++++.++++| +++|++|++++++|+
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~~~~~~d~~~l~~~i-------~~~t~~v~~~~~~n~ 199 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEAC-------DENTIGVVPTFGVTY 199 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHC-------CTTEEEEECBBSCTT
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCCCCCeECHHHHHHHH-------hhCCEEEEEEcCCcC
Confidence 144 4 88888 8887766555443222 455554 4567777776644 467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCC------CCeEEEEecccccCCC-------CCCCCCCCCcEEEEccccccccCC
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSR------SNCFVLLDAATYCGSN-------MLDLKQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~------~gi~vivD~a~~~g~~-------~~dl~~~~~D~vv~S~~K~~g~p~ 280 (815)
||.+.|+++|+++|+ + +|+++|||++++.+.. +.++...++|++++|+||++++|.
T Consensus 200 tG~~~~l~~I~~ia~-----------~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~ 268 (452)
T 2dgk_A 200 TGNYEFPQPLHDALD-----------KFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL 268 (452)
T ss_dssp TCBBCCHHHHHHHHH-----------HHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS
T ss_pred CcccCCHHHHHHHHH-----------HHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCC
Confidence 999999999999999 6 4999999999886532 234444478999999999887788
Q ss_pred cceEEEEecc-cc-cccC--cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHH
Q psy16512 281 GLGALIVKQK-SA-HVLN--KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTN 354 (815)
Q Consensus 281 G~G~l~~~~~-~~-~~l~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~ 354 (815)
|+|+++++++ .+ +.+. +.+.++.... .-..++.+....+++.+++..+...+. ..++
T Consensus 269 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~ 331 (452)
T 2dgk_A 269 GCGWVIWRDEEALPQELVFNVDYLGGQIGT-----------------FAINFSRPAGQVIAQYYEFLRLGREGYTKVQNA 331 (452)
T ss_dssp SCEEEEESSGGGSCGGGCEEECCTTCCEEE-----------------CCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCHHHHHHHhccCccccCCCCCC-----------------cccCCCChhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999764 32 3221 2222221100 011345555556666666666543322 2288
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
..++++++.+.|+++ ++++++.+.. +....++++|.++......++..++.+.|.++||.++... .+..
T Consensus 332 ~~~~a~~l~~~L~~~------~~~~~~~~~~---~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~--~~~~ 400 (452)
T 2dgk_A 332 SYQVAAYLADEIAKL------GPYEFICTGR---PDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFT--LGGE 400 (452)
T ss_dssp HHHHHHHHHHHHHTT------SSEEEEEECC---TTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEE--CSTT
T ss_pred HHHHHHHHHHHHHhC------CCeEEecCCC---CCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeee--CCcc
Confidence 899999999999998 6788875421 1134689999987532222344568888989999876421 1111
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. ...+++|+|++.++|++|+++++++|++++..
T Consensus 401 ~------------------------------~~~~~lRis~~~~~t~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 401 A------------------------------TDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 433 (452)
T ss_dssp C------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred c------------------------------CCeEEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 0 01378999999999999999999999987643
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=239.65 Aligned_cols=309 Identities=16% Similarity=0.163 Sum_probs=219.4
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..++|+.+... .+++.+.+++.+.+.. ...+|+ .. ..++|+.+++++|+++++ |++|+|+++++.+
T Consensus 17 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~lr~~la~~~~~~~~~--i~~t~G~~~~l~~ 83 (337)
T 3p1t_A 17 QAVCLAFNENPEAVEPRVQAAIAAAAAR-INRYPF------DA----EPRVMRKLAEHFSCPEDN--LMLVRGIDECFDR 83 (337)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSCCT------TH----HHHHHHHHHHHHTSCGGG--EEEESHHHHHHHH
T ss_pred CceEeeCCCCCCCCCHHHHHHHHHhhhh-hccCCC------Cc----hHHHHHHHHHHhCcCHHH--EEEeCCHHHHHHH
Confidence 45777777554 4567777777665432 111221 23 789999999999998877 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
++.++ +|| |++..+.|+++... ++..| .++++.+..++++.++++ .+++++++++++|||
T Consensus 84 ~~~~~---~gd~vl~~~p~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~---------~~~~~v~i~~p~npt 148 (337)
T 3p1t_A 84 ISAEF---SSMRFVTAWPGFDGYRAR---IAVSGLRHFEIGLTDDLLLDPNDLAQV---------SRDDCVVLANPSNPT 148 (337)
T ss_dssp HHHHS---TTSEEEEESSSCSHHHHH---HTTSCCEEEEECBCTTSSBCHHHHTTC---------CTTEEEEEESSCTTT
T ss_pred HHHhc---CCCeEEEeCCCcHHHHHH---HHHcCCEEEEecCCCCCCCCHHHHHhh---------cCCCEEEEeCCCCCC
Confidence 99987 688 88888777766443 44445 445555446677666541 458999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEeccccc--CCCCCCCCCCCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--GSNMLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--g~~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
|.++|++++.++++ .+++ +++|++++. +.........+.++++.|+||+|| ++| +|+++++++
T Consensus 149 G~~~~~~~l~~l~~-----------~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g-~~G~r~G~~~~~~~ 215 (337)
T 3p1t_A 149 GQALSAGELDQLRQ-----------RAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYG-LAGLRLGALFGPSE 215 (337)
T ss_dssp CCCCCHHHHHHHHH-----------HCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTC-CTTTCCEEEECCHH
T ss_pred CCCCCHHHHHHHHH-----------hCCc-EEEECCChhhccccccccccCCCEEEEeeCchhcc-CcchheEEEEeCHH
Confidence 99999999999999 7787 566998762 222223333456899999999998 556 699999888
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.+... ...++.+.+++.++..+++.........++..++++++.+.|+++
T Consensus 216 ~~~~l~~~--------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 268 (337)
T 3p1t_A 216 LIAAMKRK--------------------------QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL- 268 (337)
T ss_dssp HHHHHHTT--------------------------SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhh--------------------------cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 76655321 123456677777776666543322223366777788888999876
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+++++.+. ++++.+..++ + .++.+.|.++||.+++|..|..
T Consensus 269 ------g~~~~~~~--------~~~~~~~~~~--~-----~~~~~~l~~~gi~v~~g~~~~~------------------ 309 (337)
T 3p1t_A 269 ------GYRVASSE--------ANFVLVENAA--G-----ERTLRFLRERGIQVKDAGQFGL------------------ 309 (337)
T ss_dssp ------TCCBCCCS--------SSEEEEECTT--T-----HHHHHHHHHTTEECEEGGGGTC------------------
T ss_pred ------cCEECCCC--------CeEEEEEcCC--H-----HHHHHHHHHCCeEEEECccCCC------------------
Confidence 45554332 5677766542 2 2477888999999998865421
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++|+++++++|++++.
T Consensus 310 -----------------~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 310 -----------------HHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp -----------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred -----------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 278999998 79999999999998753
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=243.86 Aligned_cols=324 Identities=13% Similarity=0.084 Sum_probs=222.3
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
+.++.+.+++.+.+....+.++.. ..+. .+++.+.+++.+| +++++ |++|+|+++|+.+++.++. ++|
T Consensus 40 ~~~~~v~~a~~~~~~~~~~~y~~~---~~~l----~~~la~~l~~~~g~~~~~~~--i~~~~g~~~a~~~~~~~l~-~~g 109 (391)
T 3dzz_A 40 KIAPEIMASMEEKLKVAAFGYESV---PAEY----YKAVADWEEIEHRARPKEDW--CVFASGVVPAISAMVRQFT-SPG 109 (391)
T ss_dssp CCCHHHHHHHHHHHTTCCCCCBCC---CHHH----HHHHHHHHHHHHSCCCCGGG--EEEESCHHHHHHHHHHHHS-CTT
T ss_pred CCCHHHHHHHHHHHhcCcCCCCCC---CHHH----HHHHHHHHHHHhCCCCCHHH--EEECCCHHHHHHHHHHHhC-CCC
Confidence 356778888877765432222221 2333 6678888888888 56666 9999999999999999997 899
Q ss_pred c-EEEecCCCcchhhHHHHhhccc-eEEcCchhh---hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA---RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS--- 221 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~---~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~--- 221 (815)
| |++...+|+++.......+... .++++.+.. ++++.++++++ .+++++|++++++||||.++|.+
T Consensus 110 d~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~i~~p~nptG~~~~~~~l~ 183 (391)
T 3dzz_A 110 DQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLA------TPSVRMMVFCNPHNPIGYAWSEEEVK 183 (391)
T ss_dssp CEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT------STTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHh------ccCceEEEEECCCCCCCcccCHHHHH
Confidence 9 8888888887655444332222 334432222 66777766442 25799999999999999996654
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCC---Cc--EEEEccccccccCCc--ceEEEEe-c
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQ---PD--FISISFYKMFGYPTG--LGALIVK-Q 289 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~---~D--~vv~S~~K~~g~p~G--~G~l~~~-~ 289 (815)
+|.++|+ ++|+++|+|++++... .+.++..+. +| +++.|+||++| ++| +|+++++ +
T Consensus 184 ~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g-~~G~r~G~~~~~~~ 251 (391)
T 3dzz_A 184 RIAELCA-----------KHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFN-LAALHAACAIIPNP 251 (391)
T ss_dssp HHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHT-CTTTCCEEEECCSH
T ss_pred HHHHHHH-----------HCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcc-ccchhheEEEECCH
Confidence 5555566 8999999999987432 233333333 56 89999999998 445 8999987 6
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~ 368 (815)
++.+.+.... .....++++..++.++.++++......... ++..++++++.+.|++
T Consensus 252 ~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 252 DLRARAEESF-----------------------FLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp HHHHHHHHHH-----------------------HHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------HhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655543221 012233567777777777776533222222 7888899999999988
Q ss_pred -ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 369 -LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 369 -l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
+ |+++++.+.. +.++++.++... .+..++.+.| +++||.+++|..|....
T Consensus 309 ~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~------------ 360 (391)
T 3dzz_A 309 EV------PEVKVLDSNA-------SYLAWVDISALG---MNAEDFCKYLREKTGLIISAGNGYRGNG------------ 360 (391)
T ss_dssp HC------TTSEECCCCB-------SSEEEEECGGGC---SCHHHHHHHHHHHHCEECEESGGGCTTG------------
T ss_pred hC------CCcEEeccCc-------eEEEEEehhhcC---CCHHHHHHHHHHhCCEEEeCchhhCCCC------------
Confidence 6 6788876542 445556665321 2234577777 58999999987654321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ ++++++++++++|.+++.+
T Consensus 361 ---------------------~~~iRis~~--~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 361 ---------------------HEFVRINLA--CPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp ---------------------GGEEEEECC--SCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------CCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 379999998 6899999999999998754
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=242.37 Aligned_cols=350 Identities=12% Similarity=0.119 Sum_probs=235.5
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcc-cc-cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHh
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGA-GV-YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~-~~-~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~ 116 (815)
.+...-|.++. .+. +..+.|..+.. +. .++.+.+++.+.+........... ...... .+++++++++
T Consensus 29 ~~~~~~g~~~~-~~g----~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~la~ 99 (398)
T 3a2b_A 29 PIQSKQDTEVK-IDG----RRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDI----HVELEEKLSA 99 (398)
T ss_dssp CBCSCSSSEEE-ETT----EEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHH----HHHHHHHHHH
T ss_pred eecCCCCceEE-ECC----ceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHH----HHHHHHHHHH
Confidence 45566677665 322 12233333322 22 567777777776654211111100 112234 7889999999
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhh
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
++|.+ + +++|+|+++|+.+++.++. ++|| |++....|+++.......+.. .+.++. .+++.++++++
T Consensus 100 ~~g~~--~--v~~~~ggt~a~~~~~~~~~-~~gd~V~~~~p~~~~~~~~~~~~g~~-~~~v~~---~d~~~l~~~l~--- 167 (398)
T 3a2b_A 100 YVGKE--A--AILFSTGFQSNLGPLSCLM-GRNDYILLDERDHASIIDGSRLSFSK-VIKYGH---NNMEDLRAKLS--- 167 (398)
T ss_dssp HHTCS--E--EEEESSHHHHHHHHHHHSS-CTTCEEEEETTCCHHHHHHHHHSSSE-EEEECT---TCHHHHHHHHH---
T ss_pred HhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEECCccCHHHHHHHHHcCCc-eEEeCC---CCHHHHHHHHH---
Confidence 99973 3 9999999999999999997 8999 888898998876654443221 333332 34555555443
Q ss_pred hhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC-C----CCcE
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ-H----QPDF 267 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~-~----~~D~ 267 (815)
+....++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.. ..++.. + ++|+
T Consensus 168 ~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di 236 (398)
T 3a2b_A 168 RLPEDSAKLICTDGIFSMEGDIVNLPELTSIAN-----------EFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDL 236 (398)
T ss_dssp TSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSE
T ss_pred hhccCCceEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeE
Confidence 100116899999999999999999999999999 89999999999976532 122211 1 2699
Q ss_pred EEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh
Q psy16512 268 ISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347 (815)
Q Consensus 268 vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~ 347 (815)
++.|+||+++ |+| |++++++++++.+..... .....++.+....+++.++++.+..
T Consensus 237 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~~a~~~~~l~~~~~ 292 (398)
T 3a2b_A 237 IMGTFSKSLA-SLG-GFVAGDADVIDFLKHNAR----------------------SVMFSASMTPASVASTLKALEIIQN 292 (398)
T ss_dssp EEEESSSTTC-SSC-EEEEECHHHHHHHHHHCH----------------------HHHSSBCCCHHHHHHHHHHHHHHHH
T ss_pred EEeccccccc-CCC-cEEEeCHHHHHHHHHhcc----------------------cceecCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999 888 999999887665532110 0112234555555556677776544
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccC
Q psy16512 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTG 427 (815)
Q Consensus 348 ~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g 427 (815)
.....++.+++++++.+.|+++ +++++.+ .++++++.++.. .+..++.+.|.++||.+++|
T Consensus 293 ~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~~~ 353 (398)
T 3a2b_A 293 EPEHIEKLWKNTDYAKAQLLDH-------GFDLGAT--------ESPILPIFIRSN----EKTFWVTKMLQDDGVFVNPV 353 (398)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHT-------TCCBCSC--------CSSEEEEECCCH----HHHHHHHHHHHHTTEECEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-------CCCcCCC--------CCCEEEEEcCCH----HHHHHHHHHHHHCCcEEEee
Confidence 3223388899999999999886 4554432 267888877521 12335777887889999988
Q ss_pred ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 428 CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 428 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..|..+. ..+++|++++.+++++++++++++|++++.+
T Consensus 354 ~~~~~~~--------------------------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 354 VSPAVPA--------------------------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp CTTTSCG--------------------------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC--------------------------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 6653211 1378999999989999999999999998743
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=241.37 Aligned_cols=315 Identities=12% Similarity=0.059 Sum_probs=222.0
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+.. ... +..... ..++++.+++++++++++ |++|+|+++|+.+++.++. ++|| |
T Consensus 39 ~~~~v~~a~~~~~~~-~~~-----y~~~~~----~~~l~~~la~~~~~~~~~--v~~~~g~~~a~~~~~~~~~-~~gd~V 105 (381)
T 1v2d_A 39 PPPFLLEAVRRALGR-QDQ-----YAPPAG----LPALREALAEEFAVEPES--VVVTSGATEALYVLLQSLV-GPGDEV 105 (381)
T ss_dssp CCHHHHHHHHHHTTT-SCS-----CCCTTC----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHHC-CTTCEE
T ss_pred CCHHHHHHHHHHHHH-hcC-----CCCCCC----CHHHHHHHHHhcCCChhh--EEEcCChHHHHHHHHHHhC-CCCCEE
Confidence 456777777665543 111 111123 678999999999998877 9999999999999999997 8898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcC---chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHH
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFS---VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCN 224 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~---~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~ 224 (815)
++....|+++....+..+... .++.+ .+..++++.+++++ .+++++|++++++||||.++| +++|.
T Consensus 106 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~~~nptG~~~~~~~l~~i~ 178 (381)
T 1v2d_A 106 VVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL-------TPRTRALLLNTPMNPTGLVFGERELEAIA 178 (381)
T ss_dssp EEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTC-------CTTEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred EEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhc-------CcCCEEEEECCCCCCCCCccCHHHHHHHH
Confidence 899989988765444332222 55554 23455666666533 467899999999999999998 55666
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCC---CCCCCC--CCCCcEEEEccccccccCCc--ceEEEEecccccccCc
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLK--QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNK 297 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~--~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~ 297 (815)
++|+ ++|+++|+|++++... .+.++. ..+.|+++.|+||+|| ++| +|++++++++++.+..
T Consensus 179 ~~~~-----------~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~ 246 (381)
T 1v2d_A 179 RLAR-----------AHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLE-ATGYRVGWIVGPKEFMPRLAG 246 (381)
T ss_dssp HHHH-----------HTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTT-CGGGCCEEEECCTTTHHHHHH
T ss_pred HHHH-----------HcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcC-CcccceEEEEeCHHHHHHHHH
Confidence 7777 8999999999987532 223332 3478999999999998 558 8999998887665532
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--HhhhhhH-HHHHHHHHHHHHHHHhccccCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EKKRKSF-TNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
.. .+..++.+.....++.++++.. ....... ++..++++++.+.|++.
T Consensus 247 ~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----- 297 (381)
T 1v2d_A 247 MR------------------------QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----- 297 (381)
T ss_dssp HH------------------------HHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HH------------------------hhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC-----
Confidence 11 1223456777777777777754 2211222 78888999999999885
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
+++++.+.. +.++++.++.. . +.+.+.++||.+++|..|....
T Consensus 298 --g~~~~~~~~-------~~~~~~~~~~~---~-----~~~~l~~~gi~v~~g~~~~~~~-------------------- 340 (381)
T 1v2d_A 298 --GLRVYVPEG-------TYFLMAELPGW---D-----AFRLVEEARVALIPASAFYLED-------------------- 340 (381)
T ss_dssp --TCCEECCSB-------SSEEEEECTTC---C-----HHHHHHHTCEECEEGGGGCSSS--------------------
T ss_pred --CCEecCCCc-------ceEEEEecChH---h-----HHHHHHhCCEEEecchHhCCCC--------------------
Confidence 566665432 55677766532 1 6677889999999886553210
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++. ++++++++++.|.+++.+.
T Consensus 341 -----------~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~ 371 (381)
T 1v2d_A 341 -----------PPKDLFRFAFCK--TEEELHLALERLGRVVNSP 371 (381)
T ss_dssp -----------CCTTEEEEECCS--CHHHHHHHHHHHHHHC---
T ss_pred -----------CCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhc
Confidence 113789999986 8999999999999986543
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=240.71 Aligned_cols=323 Identities=14% Similarity=0.071 Sum_probs=229.2
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.....+++.+. ...... ..++++.+++++|++ + .++++++++|+..++.++. ++||
T Consensus 79 ~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~----~~~l~~~la~~~g~~-~---~i~~~sGs~a~~~al~~l~-~~gd 149 (427)
T 2w8t_A 79 FDPDVIAAGKEALEKFGSGTCGSRMLNGTFHD----HMEVEQALRDFYGTT-G---AIVFSTGYMANLGIISTLA-GKGE 149 (427)
T ss_dssp GCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHH----HHHHHHHHHHHHTCS-E---EEEESCHHHHHHHHHHHHS-CTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCcccccccCCcHH----HHHHHHHHHHHhCCC-c---eEEecCcHHHHHHHHHHhc-CCCC
Confidence 557788887776654222222221 112234 789999999999975 2 5555666779999999887 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
|++....|+++.......+.. .+.++. .+++.++++++ ...+ ++++|++++++||||.+.|+++|.++|+
T Consensus 150 ~vl~~~~~h~~~~~~~~~~g~~-~~~~~~---~d~~~le~~l~----~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~ 221 (427)
T 2w8t_A 150 YVILDADSHASIYDGCQQGNAE-IVRFRH---NSVEDLDKRLG----RLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAK 221 (427)
T ss_dssp EEEEETTCCHHHHHHHHHSCSE-EEEECT---TCHHHHHHHHH----TSCSSSCEEEEEESEETTTTEECCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHcCCe-eEEeCC---CCHHHHHHHHH----hccCCCCeEEEEcCCCCCCCCccCHHHHHHHHH
Confidence 888888998876655443211 344432 35555655443 1112 6899999999999999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~ 299 (815)
++|+++|+|++++.+... +++. .++|+++.|+||++| ++| |++++++++++.+.+..
T Consensus 222 -----------~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g-~~g-G~v~~~~~l~~~l~~~~ 287 (427)
T 2w8t_A 222 -----------KHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVG-TVG-GFVVSNHPKFEAVRLAC 287 (427)
T ss_dssp -----------HTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTC-SCC-EEEEECCTTGGGGGGTC
T ss_pred -----------HcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhc-cCC-CEEEeCHHHHHHHHHhc
Confidence 899999999999877543 3432 267999999999999 767 99999988876654321
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
. .....++.+...++++.++++.+.......++..++++++.+.|+++ ++.
T Consensus 288 ~----------------------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~ 338 (427)
T 2w8t_A 288 R----------------------PYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-------GFR 338 (427)
T ss_dssp H----------------------HHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-------TCE
T ss_pred c----------------------cccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCc
Confidence 0 00123567778888877888876543233388999999999999887 566
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
+..+. ..++++++.+++. ....++.+.|.++||.++++..+..+
T Consensus 339 ~~~~~------~~~~~~~~~~~~~----~~~~~l~~~L~~~Gi~v~~~~~~~~~-------------------------- 382 (427)
T 2w8t_A 339 LGTET------CDSAIVAVMLEDQ----EQAAMMWQALLDGGLYVNMARPPATP-------------------------- 382 (427)
T ss_dssp ESCSS------CCSSEEEEEESSH----HHHHHHHHHHHHTTEECEEECTTTSC--------------------------
T ss_pred ccCCC------CCCCEEEEEECCH----HHHHHHHHHHHHCCeEEeeeCCCCCC--------------------------
Confidence 66332 1267888887531 12235778888889999887543311
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++.+
T Consensus 383 ------~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 383 ------AGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp ------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 01378999999999999999999999998754
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-26 Score=257.62 Aligned_cols=354 Identities=11% Similarity=0.005 Sum_probs=228.8
Q ss_pred ccccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCC-----hh-----hhhhhhhhhHHHHHHHHHhHcCCCCC
Q psy16512 54 EGKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG-----NS-----VLSDFCVSEIDQMRTKILQYFNTDSD 123 (815)
Q Consensus 54 ed~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s-----~~-----~~~~~~~~~~~~~r~~la~~~g~~~~ 123 (815)
++|+..+..+|||+++.++.++.+.+++....... +.++.. .. ..........+++++++++++|++++
T Consensus 73 ~~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~ 151 (456)
T 2z67_A 73 KFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSG-FCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH 151 (456)
T ss_dssp HHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTT-CTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHhccccccccccccccccccccccccCccccc-cCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC
Confidence 35555667799999999999999998876643211 222211 00 00001223378899999999999763
Q ss_pred ceeEEecCCch-hhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-eEEc---Cchhhhcchhhhhhhhhhhh
Q psy16512 124 HYSVIFTSGAT-SAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SVDDARNMLNEFKESQENVE 196 (815)
Q Consensus 124 ~~~iv~t~g~t-~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~~~~~~~~~~~~~l~~~~~ 196 (815)
++||+|+| .++.+++.++.. .+|+ +|++..+|+++....+..+... .++. +.++.+++++++++|+ ..
T Consensus 152 ---~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~d~~~l~~~i~--~~ 226 (456)
T 2z67_A 152 ---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIK--KE 226 (456)
T ss_dssp ---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHH--HH
T ss_pred ---EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEeccCCCCCcCHHHHHHHHH--HH
Confidence 99999999 566556665431 2567 8888889999765544432222 3333 4455678888877552 00
Q ss_pred hcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc---CCCCCCCCCC--CCcEEEEc
Q psy16512 197 NMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSNMLDLKQH--QPDFISIS 271 (815)
Q Consensus 197 ~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~~~dl~~~--~~D~vv~S 271 (815)
....++.+|++++++|+||.+.|+++|.++|+ ++|+++++|++++. |..+.+...+ ++|++++|
T Consensus 227 ~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~-----------~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s 295 (456)
T 2z67_A 227 IELGNRPCVLSTLTFFPPRNSDDIVEIAKICE-----------NYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSS 295 (456)
T ss_dssp HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEE
T ss_pred hhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEc
Confidence 00136788889999999999999999999999 89999999977653 3333332222 78999999
Q ss_pred cccccccCCcceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh
Q psy16512 272 FYKMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350 (815)
Q Consensus 272 ~~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~ 350 (815)
+||++++|.|+|+++++ +++++.+.+.+.|+. +....+++.+++..+...+.
T Consensus 296 ~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~~---------------------------~~~~~~~~~aal~~l~~~~~ 348 (456)
T 2z67_A 296 SDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRA---------------------------SATPVVNTLVSLLSMGSKNY 348 (456)
T ss_dssp HHHHHCCCSSCEEEEESCHHHHHHHHTTSCSCB---------------------------CSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCCC---------------------------CCCHHHHHHHHHHHHHHHHH
Confidence 99987779999999995 456555544443221 11224445555655543332
Q ss_pred -h-HHHHHHHHHHHHHHHHhccccCCCC---cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcE-e
Q psy16512 351 -S-FTNAFELSQYTYFYFKQLSYSNGQP---LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQ-L 424 (815)
Q Consensus 351 -~-~~~~~~l~~~l~~~L~~l~~~~~~p---~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~-v 424 (815)
. .++..++++++.+.|+++ + ++.++.+ . ++++|.+..... ..++.+.|.++||. +
T Consensus 349 ~~~~~~~~~~~~~l~~~L~~~------~~~~g~~v~~~--------~-~~v~~~~~~~~~----~~~l~~~L~~~gi~~~ 409 (456)
T 2z67_A 349 LELVKNQKNSKKLLDELLNDL------SKKTGGKFLDV--------E-SPIASCISVNSD----PVEIAAKLYNLRVTGP 409 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHSSCCBCCC--------C-CSSEEEEECSSC----HHHHHHHHHHTTEESC
T ss_pred HHHHHHHHHHHHHHHHHHHhc------ccccCCEecCC--------C-CeEEEEEecccH----HHHHHHHHHHcCCCcc
Confidence 2 288999999999999887 4 5444432 1 667777632111 23577888888862 2
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+... .. | .+. |..|.. .+.+++|+|++.++|++||++++++|++++
T Consensus 410 rv~~--~~-------g--------~f~-G~~~~~-------~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 410 RGIK--KT-------D--------HFG-NCYLGT-------YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp EEEC--TT-------C--------HHH-HTCSSC-------CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred eEEe--ec-------C--------ccc-cccccc-------cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 2110 00 0 000 111211 123799999999999999999999998754
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=240.09 Aligned_cols=349 Identities=13% Similarity=0.070 Sum_probs=236.1
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcccc----cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGAGV----YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~~----~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~l 114 (815)
+++..-|-++.. ++..|+|.....+ .++.+.+++.+.+....+..+.+. ...... ..++++++
T Consensus 29 ~~~~~~g~~v~~-------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~l 97 (399)
T 3tqx_A 29 IITSPQNAEIKV-------GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTI----HKELEKDI 97 (399)
T ss_dssp CBCSCSSSEEEE-------TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHH----HHHHHHHH
T ss_pred cccCCCCceEee-------CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchH----HHHHHHHH
Confidence 455666666543 1223444443332 357777777776654222222111 223344 78999999
Q ss_pred HhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhh
Q psy16512 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 115 a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l 191 (815)
++++|.+ + .+++++ +++|+..++.++. ++|| |++....|+++...... .| .+.+.. .+++.+++++
T Consensus 98 a~~~~~~-~--~i~~~s-Gt~a~~~~l~~~~-~~gd~v~~~~~~~~~~~~~~~~---~g~~~~~~~~---~d~~~l~~~l 166 (399)
T 3tqx_A 98 SEFLGTD-D--TILYSS-CFDANGGLFETLL-GPEDAIISDELNHASIIDGIRL---CKAQRYRYKN---NAMGDLEAKL 166 (399)
T ss_dssp HHHHTCS-E--EEEESC-HHHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHS---CCSEEEEECT---TCTTHHHHHH
T ss_pred HHHHCCC-c--EEEECc-hHHHHHHHHHHhc-CCCCEEEECCcccHHHHHHHHH---cCCceeEeCC---CCHHHHHHHH
Confidence 9999975 3 256555 5789999998887 8999 88888889887654433 34 333332 3455555544
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC------CC--CC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD------LK--QH 263 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d------l~--~~ 263 (815)
+.... ...++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+....+ .. ..
T Consensus 167 ~~~~~-~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 234 (399)
T 3tqx_A 167 KEADE-KGARFKLIATDGVFSMDGIIADLKSICDLAD-----------KYNALVMVDDSHAVGFIGENGRGTPEYCGVAD 234 (399)
T ss_dssp HHHHT-TTCSSEEEEEESEETTTTEECCHHHHHHHHH-----------HTTCEEEEECTTTTTTSSTTSCCHHHHHTCTT
T ss_pred Hhhhc-cCCCceEEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCEEEEECCccccccCCCCCchHHhhCCCC
Confidence 31110 0127999999999999999999999999999 89999999999976543221 11 12
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
++|+++.|+||+|++++| |+++.++++++.+..... .....++.+...+.++.++++
T Consensus 235 ~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~ 291 (399)
T 3tqx_A 235 RVDILTGTLGKALGGASG-GYTSGHKEIIEWLRNRSR----------------------PYLFSNTVAPVIVATSLKVLE 291 (399)
T ss_dssp CCSEEEEESSSSSCSSCC-EEEEECHHHHHHHHHHCH----------------------HHHSSCCCCHHHHHHHHHHHH
T ss_pred CCcEEEecchHhcccCce-EEEEcCHHHHHHHHHhCc----------------------ceeccCCCcHHHHHHHHHHHH
Confidence 579999999999997777 999999887765532110 011245778888888888888
Q ss_pred HHH-hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCc
Q psy16512 344 TME-KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKI 422 (815)
Q Consensus 344 ~l~-~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI 422 (815)
.+. ......++..++++++.+.|+++ ++++..+ .++++++.++.. .+..++.+.|.++||
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~l~~~gi 352 (399)
T 3tqx_A 292 LLKTEGPQLRKQLQENSRYFRAGMEKL-------GFQLVPG--------NHPIIPVMLGDA----QLATNMADHLLQEGI 352 (399)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHH-------TCCBCCC--------SSSEEEEEEECH----HHHHHHHHHHHHTTE
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHc-------CCCcCCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCC
Confidence 773 22223388999999999999887 5555532 267888887642 122357788888999
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++++.+...+ ...+++|++++.+++++|+++++++|++++.+
T Consensus 353 ~v~~~~~~~~~--------------------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 353 YVVGFSYPVVP--------------------------------MGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp ECCEECTTTSC--------------------------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeCCCCCC--------------------------------CCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99865432110 11379999999999999999999999998754
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=237.40 Aligned_cols=317 Identities=15% Similarity=0.191 Sum_probs=221.0
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
..++|+.+... ..++.+.+++.+.+... .+.+|+ .. ..++|+++++++|+++++ |++|+|+++|
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~g~~~~~--i~~t~g~~~a 94 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS------AS----SQKLREVAGELYGFDPSW--IIMANGSDEV 94 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC------SS----CHHHHHHHHHHHTCCGGG--EEEESSHHHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC------Cc----hHHHHHHHHHHhCcCcce--EEEcCCHHHH
Confidence 34555555444 35677888887766542 223332 12 578999999999988887 9999999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+ . .+++++++++++|||
T Consensus 95 l~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~l~~-------~--~~~~~v~i~~p~npt 162 (360)
T 3hdo_A 95 LNNLIRAFA-AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGD--FRIAGFPE-------R--YEGKVFFLTTPNAPL 162 (360)
T ss_dssp HHHHHHHHC-CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTT--SSBTTCCS-------S--BCSSEEEEESSCTTT
T ss_pred HHHHHHHHh-CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCC--CCHHHHHh-------h--cCCCEEEEeCCCCCC
Confidence 999999997 8998 8888888877655444433222 4444433 22233222 1 236799999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccccC--CCCCCC-CCCCCcEEEEccccccccCCc--ceEEEEec
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG--SNMLDL-KQHQPDFISISFYKMFGYPTG--LGALIVKQ 289 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g--~~~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~ 289 (815)
|.++|+++|.++|+ ++|+++|+|++++.. .....+ ...+.++++.|+||+|| ++| +|++++++
T Consensus 163 G~~~~~~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~ 230 (360)
T 3hdo_A 163 GPSFPLEYIDELAR-----------RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYS-LAGMRIGLAIARP 230 (360)
T ss_dssp CCCCCHHHHHHHHH-----------HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTS-CTTSCCEEEECCH
T ss_pred CCCcCHHHHHHHHH-----------HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhc-CCccceeeEeeCH
Confidence 99999999999999 789999999998742 111111 12345688899999998 445 79999987
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++.+.+.... ...+.+..+..++.++++.........++..++++++.+.|+++
T Consensus 231 ~~~~~~~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 284 (360)
T 3hdo_A 231 EVIAALDKIR--------------------------DHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI 284 (360)
T ss_dssp HHHHHHHHHS--------------------------CSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7765553211 12356777777777777753322223378888999999999886
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++.++.+. ++++.+.+++. +..++.+.|.++||.++++.. ..
T Consensus 285 -------~~~~~~~~--------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~---~~--------------- 326 (360)
T 3hdo_A 285 -------GYDVIPSQ--------GNYLFATPPDR-----DGKRVYDGLYARKVLVRHFSD---PL--------------- 326 (360)
T ss_dssp -------TCEECCCS--------SSEEEEECTTC-----CHHHHHHHHHHTTEECBCCCS---TT---------------
T ss_pred -------CCEEcCCC--------ccEEEEECCCC-----CHHHHHHHHHHCCEEEEECCC---CC---------------
Confidence 56665332 67777766533 234688889999999987532 00
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++ +.+|+++++++|+++..+
T Consensus 327 -----------------~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 327 -----------------LAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp -----------------TTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred -----------------CCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 0378999998 899999999999986543
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=246.95 Aligned_cols=359 Identities=12% Similarity=0.066 Sum_probs=226.8
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
...|+++...+..+..+..++..... |++.. +.......+..+++++++++++|+++++ ++||+|+|+|+.+
T Consensus 108 ~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~--~~~t~ggtea~~~ 180 (515)
T 2jis_A 108 HPRFFNQLFSGLDPHALAGRIITESL-----NTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGD--GIFCPGGSISNMY 180 (515)
T ss_dssp STTEESSSCCCCCHHHHHHHHHHHHH-----CCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCE--EEEESSHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHHh-----ccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCC--eEEcCCcHHHHHH
Confidence 34688888777777777665544322 33321 2222222222778999999999998655 9999999999988
Q ss_pred HHhhhcc-------CCC-------cEEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhhhhcCCC
Q psy16512 140 VSEYFEF-------NEG-------SFIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENVENMRHS 201 (815)
Q Consensus 140 ~~~al~~-------~~g-------dvv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (815)
++.++.. .+| .++++..+|+++.......+. .. .++++.++.++++.++++|.+.. ....+
T Consensus 181 al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~ 259 (515)
T 2jis_A 181 AVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAE-AEGAV 259 (515)
T ss_dssp HHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCE
T ss_pred HHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHH-hCCCC
Confidence 8887631 245 367777889998877666544 12 56666666778888887664111 01225
Q ss_pred ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC-----CCCC-CCcEEEEccccc
Q psy16512 202 NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD-----LKQH-QPDFISISFYKM 275 (815)
Q Consensus 202 t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d-----l~~~-~~D~vv~S~~K~ 275 (815)
+++|++++++|+||.+.|+++|+++|+ ++|+++|+|++++.+..+.+ +... ++|++++|+|||
T Consensus 260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~-----------~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~ 328 (515)
T 2jis_A 260 PFLVSATSGTTVLGAFDPLEAIADVCQ-----------RHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKL 328 (515)
T ss_dssp EEEEEEEBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTST
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccc
Confidence 899999999999999999999999999 89999999999988876554 3333 789999999999
Q ss_pred cccCCcceEEEEecc--ccccc----CcccccCceEEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhh
Q psy16512 276 FGYPTGLGALIVKQK--SAHVL----NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 276 ~g~p~G~G~l~~~~~--~~~~l----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~ 348 (815)
+++|.|+|+++++++ +++.. .+.+.+++.. ....+. ........+. .... ++..++..+...
T Consensus 329 l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~----~~~~~~----~~~~~~~~~rr~~al---~~~~~l~~lg~~ 397 (515)
T 2jis_A 329 LAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKF----YDVALD----TGDKVVQCGRRVDCL---KLWLMWKAQGDQ 397 (515)
T ss_dssp TCCCSCCEEEEESCCSCHHHHHHCC---------CC----SCGGGC----CGGGCSCSSCCCCHH---HHHHHHHHHHHH
T ss_pred cCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccc----ccccCC----CCCCCCCCCCcccHH---HHHHHHHHHhHH
Confidence 988999999999987 44431 1222222110 000000 0000001110 1122 233334433332
Q ss_pred hh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC--C----CCccCH------HHHH
Q psy16512 349 RK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK--D----GTYYGY------SEVQ 414 (815)
Q Consensus 349 ~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~--~----~~~~~~------~~v~ 414 (815)
+. ..++..++++++.+.|+++ |+++++.+.. .+.++|..... . ...+.. ..+.
T Consensus 398 g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~-------~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~ 464 (515)
T 2jis_A 398 GLERRIDQAFVLARYLVEEMKKR------EGFELVMEPE-------FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLK 464 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS------TTEEESSCCS-------SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCEEEeCCCC-------eeEEEEEEeCccccccccchhHHHHHHHHHHHHH
Confidence 22 2288899999999999998 7999987532 46678876321 1 111100 0133
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~ 493 (815)
+.+.+.|+..... .. .++. .+++|+++ +.++|++||++++++|++
T Consensus 465 ~~l~~~G~~~~~~-----~~----------------------------~~~~-~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 465 ERMVKEGSMMIGY-----QP----------------------------HGTR-GNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp HHHHHHTSCEEEE-----EE----------------------------ETTE-EEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEE-----EE----------------------------ECCc-eEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3444555432110 00 0011 37899999 899999999999999998
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 511 ~~~ 513 (515)
T 2jis_A 511 LGQ 513 (515)
T ss_dssp HHT
T ss_pred HHh
Confidence 753
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=239.65 Aligned_cols=336 Identities=13% Similarity=0.138 Sum_probs=227.7
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe-cCCchhhHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF-TSGATSAIKTV 140 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~-t~g~t~al~~~ 140 (815)
.+|+.+.+...+++.+.+++.+.. .......+........ ++++++++++++|++++ ++|++ |+|+|+|+.++
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~la~~~g~~~~-~~i~~~t~g~t~al~~~ 113 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTA-AALFGTSHRQAPVKNL----VGRVRSGLAELFSLPDG-YEVILGNGGATAFWDAA 113 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTT-TTTTTSCTTSHHHHHH----HHHHHHHHHHHTTCCTT-CEEEEEETCHHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcC-CCccCcCcCCHHHHHH----HHHHHHHHHHHhCCCCC-ceEEEeCCchhHHHHHH
Confidence 456667777788888888775421 0111111222223334 78999999999999742 24888 99999999999
Q ss_pred HhhhccCCC-cEEEecCCCcchhhHHHHhhcc--c----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 141 SEYFEFNEG-SFIYLTDNHTSVLGMRELVKTN--Q----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 141 ~~al~~~~g-dvv~~~~~h~s~~~~~~~~~~~--g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+.++. ++| +++ +..+|... +...+... | .++++ ++..... .++++|++|++++++||
T Consensus 114 ~~~l~-~~gv~~v-~~~~~~~~--~~~~~~~~~~g~~~~~v~~~-~g~~~~~-----------~i~~~~~~v~~~~~~np 177 (398)
T 2fyf_A 114 AFGLI-DKRSLHL-TYGEFSAK--FASAVSKNPFVGEPIIITSD-PGSAPEP-----------QTDPSVDVIAWAHNETS 177 (398)
T ss_dssp HHHTC-SSCEEEE-ECSHHHHH--HHHHHHHCTTSCCCEEEECC-TTCCCCC-----------CCCTTCSEEEEESEETT
T ss_pred HHHhc-CCCeEEE-eCCHHHHH--HHHHHHHhCCCCceEEEecC-CCCCCCc-----------cccCCCCEEEEeCcCCC
Confidence 99997 777 444 44444321 11122222 3 55665 2221111 12467999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.++|+++|.++ +|+++|+|++++.+..++++. ++|++++|+||++|.+.|+|++++++++++
T Consensus 178 tG~~~~~~~i~~~--------------~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~ 241 (398)
T 2fyf_A 178 TGVAVAVRRPEGS--------------DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALS 241 (398)
T ss_dssp TTEECCCCCCTTC--------------C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHH
T ss_pred cceecchHHhhhh--------------cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHH
Confidence 9999999887543 589999999999988777654 489999999999995546999999998876
Q ss_pred ccCc---------ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hh-HHHHHHHHHH
Q psy16512 294 VLNK---------TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KS-FTNAFELSQY 361 (815)
Q Consensus 294 ~l~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~-~~~~~~l~~~ 361 (815)
.+++ .+..++.. . .........++++..+++++.++++.+...+ .. .++..+++++
T Consensus 242 ~l~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~ 309 (398)
T 2fyf_A 242 RIEAIAATGRWVPDFLSLPIA---------V---ENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQR 309 (398)
T ss_dssp HHHHHHHTTCCCCGGGCHHHH---------H---HHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HhhcccccCCCCCcEEehHHH---------h---hhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5532 11111100 0 0000123456889999999989998876543 22 3888999999
Q ss_pred HHHHHHhccccCCCCcEEEcCCCCCCCCCcccc-eEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC
Q psy16512 362 TYFYFKQLSYSNGQPLVELYHDTDYGESKYQGN-IVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG 440 (815)
Q Consensus 362 l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~-i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g 440 (815)
+.+.|+++ |+++++.+. +..+++ +++|.++.. ++..++.+.|.++||.+++|.. .+
T Consensus 310 l~~~L~~~------~g~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~v~~g~~--------~~- 366 (398)
T 2fyf_A 310 LYSWAQER------PYTTPFVTD----PGLRSQVVGTIDFVDD----VDAGTVAKILRANGIVDTEPYR--------KL- 366 (398)
T ss_dssp HHHHHHHS------TTEEESCCS----GGGBCSSEEEEEECTT----SCHHHHHHHHHHTTCBCCSCCT--------TT-
T ss_pred HHHHHHHc------CCceeccCC----hhhcCCcEEEEECCCC----CCHHHHHHHHHHCCcEEecCcc--------cC-
Confidence 99999988 688887421 011244 888888531 2344688888888999987510 00
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++.+++++|+++++++|++++.
T Consensus 367 --------------------------~~~~iRis~~~~~t~e~i~~~~~~l~~~l~ 396 (398)
T 2fyf_A 367 --------------------------GRNQLRVAMFPAVEPDDVSALTECVDWVVE 396 (398)
T ss_dssp --------------------------CSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 137899999999999999999999998764
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=238.99 Aligned_cols=347 Identities=11% Similarity=0.070 Sum_probs=234.8
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhcccc----cchhhHHHHHHHHhhccccCCCC--hhh--hhhhhhhhHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTGAGV----YSQSQMNQTIEQLKENIFSHPHG--NSV--LSDFCVSEIDQMRT 112 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~~----~p~~v~~al~~~l~~~~~~np~s--~~~--~~~~~~~~~~~~r~ 112 (815)
.+...-|.++... ++..|+|..+..+ .++.+.+++.+.+.. +++... .+. .... ..++++
T Consensus 30 ~~~~~~g~~~~~~------~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~g~~~~----~~~l~~ 97 (401)
T 1fc4_A 30 IITSAQQADITVA------DGSHVINFCANNYLGLANHPDLIAAAKAGMDS--HGFGMASVRFICGTQDS----HKELEQ 97 (401)
T ss_dssp CBCSCSSSEEEBT------TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHH--HCSCCCSCHHHHCCBHH----HHHHHH
T ss_pred eeccCCCceEEee------CCccEEEeeccCcccccCCHHHHHHHHHHHHH--hCCCCCCCCcccCCcHH----HHHHHH
Confidence 4445556554332 1233555443322 367788888776643 222221 111 1334 789999
Q ss_pred HHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhh
Q psy16512 113 KILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFK 189 (815)
Q Consensus 113 ~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~ 189 (815)
.+++++|++ +. +++ +++|+|+..++.++. ++|| |++....|+++.... ...| .+.++. .+.+.+++
T Consensus 98 ~la~~~g~~-~~--i~~-~sGs~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~---~~~g~~~~~~~~---~d~~~l~~ 166 (401)
T 1fc4_A 98 KLAAFLGME-DA--ILY-SSCFDANGGLFETLL-GAEDAIISDALNHASIIDGV---RLCKAKRYRYAN---NDMQELEA 166 (401)
T ss_dssp HHHHHHTCS-EE--EEE-SCHHHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHH---HTSCSEEEEECT---TCHHHHHH
T ss_pred HHHHHhCCC-cE--EEe-CChHHHHHHHHHHHc-CCCCEEEEcchhHHHHHHHH---HHcCCceEEECC---CCHHHHHH
Confidence 999999986 32 555 555779999999887 8999 888888887765543 3445 444432 24455555
Q ss_pred hhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-C--------CCC
Q psy16512 190 ESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-M--------LDL 260 (815)
Q Consensus 190 ~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~--------~dl 260 (815)
+++.... ...++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+.. + .++
T Consensus 167 ~l~~~~~-~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~-----------~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 234 (401)
T 1fc4_A 167 RLKEARE-AGARHVLIATDGVFSMDGVIANLKGVCDLAD-----------KYDALVMVDDSHAVGFVGENGRGSHEYCDV 234 (401)
T ss_dssp HHHHHHH-TTCSSEEEEEESEETTTTEECCHHHHHHHHH-----------HTTEEEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred HHHHhhc-cCCCceEEEEeCCcCCCCCCCCHHHHHHHHH-----------HcCCEEEEECcccccccCCCCCccHHHcCC
Confidence 4431110 0116899999999999999999999999999 89999999999975543 2 333
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.. +.|+++.|+||+|+++.| |++++++++++.+..... .....++.+...+.++.+
T Consensus 235 ~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~~l~~~~~----------------------~~~~~~~~~~~~~~a~~~ 290 (401)
T 1fc4_A 235 MG-RVDIITGTLGKALGGASG-GYTAARKEVVEWLRQRSR----------------------PYLFSNSLAPAIVAASIK 290 (401)
T ss_dssp TT-CCSEEEEESSSTTCSSSC-EEEEECHHHHHHHHHHCH----------------------HHHHSCCCCHHHHHHHHH
T ss_pred Cc-CCcEEEecchhhccCCCC-EEEEcCHHHHHHHHHhCc----------------------CceeCCCCCHHHHHHHHH
Confidence 32 579999999999944666 999998877665532110 001134678888888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+.......++..++++++.+.|+++ +++++ +. .++++++.+++. .+..++.+.|.++
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~-~~-------~~~~~~~~~~~~----~~~~~l~~~l~~~ 351 (401)
T 1fc4_A 291 VLEMVEAGSELRDRLWANARQFREQMSAA-------GFTLA-GA-------DHAIIPVMLGDA----VVAQKFARELQKE 351 (401)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHT-------TCCBC-CS-------SSSEEEEEEECH----HHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCccc-CC-------CCCEEEEEcCCh----HHHHHHHHHHHHC
Confidence 88877653223388899999999999886 44544 22 378888888631 1233577888888
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.+++|..|..+. ..+++|++++.+++++++++++++|++++..
T Consensus 352 gi~v~~~~~~~~~~--------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 396 (401)
T 1fc4_A 352 GIYVTGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp TEECCEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEeeecCCCCCC--------------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999876543110 1378999999999999999999999998653
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=231.86 Aligned_cols=308 Identities=15% Similarity=0.111 Sum_probs=213.0
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+.. ....+. .. ..++|+.+++++|+++++ |++|+|+++|+.+++.++ +|| |
T Consensus 38 ~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--v~~~~g~~~al~~~~~~~---~gd~v 101 (364)
T 1lc5_A 38 MPVSVKRALIDNLDC-IERYPD------AD----YFHLHQALARHHQVPASW--ILAGNGETESIFTVASGL---KPRRA 101 (364)
T ss_dssp CCHHHHHHHHHTGGG-GGSCCC------TT----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHH---CCSEE
T ss_pred CCHHHHHHHHHHHHH-hhcCCC------CC----HHHHHHHHHHHHCcCHHH--EEECCCHHHHHHHHHHHc---CCCeE
Confidence 456777777665432 111121 12 678999999999998777 999999999999999988 457 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHh
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVH 227 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~ 227 (815)
++....|+++.......+... .++.+.++.++. +++.+ +.+.+++++|++++++||||.++| +++|.++|
T Consensus 102 l~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~--l~~~~----~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~ 175 (364)
T 1lc5_A 102 MIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL--TDAIL----EALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRC 175 (364)
T ss_dssp EEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC--CTTHH----HHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch--hHHHH----HhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 888888877655444332222 556654333333 22222 133467899999999999999999 66677777
Q ss_pred hccccccccccCCCCeEEEEecccccCCC----CCCC-CCCCCcEEEEccccccccCCc--ceEEE-EecccccccCccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDL-KQHQPDFISISFYKMFGYPTG--LGALI-VKQKSAHVLNKTF 299 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~-~~~~~~~~l~~~~ 299 (815)
+ ++|+++|+|++++.+.. .++. ...+.++++.|+||+|| ++| +|+++ .++++++.+.+..
T Consensus 176 ~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~l~~~~ 243 (364)
T 1lc5_A 176 K-----------SLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRRQQ 243 (364)
T ss_dssp H-----------HHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHHHS
T ss_pred h-----------hcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhc-CCccceEEEEECCHHHHHHHHHhC
Confidence 7 89999999999875431 1222 33567899999999998 557 69999 8887765553211
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
..++.+..+..++.++++.........++.+++++++.+.|+++ |+++
T Consensus 244 --------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~ 291 (364)
T 1lc5_A 244 --------------------------MPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL------PLLT 291 (364)
T ss_dssp --------------------------CTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS------TTEE
T ss_pred --------------------------CCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC------CCCE
Confidence 12356777777776666542212122277788889999999887 6888
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
++.+. ++++++.++.. ... +.+.|.++||.+++|..|..
T Consensus 292 ~~~~~--------g~~~~~~~~~~-~~~-----l~~~l~~~gi~v~~g~~~~~--------------------------- 330 (364)
T 1lc5_A 292 VYPGR--------ANYLLLRCERE-DID-----LQRRLLTQRILIRSCANYPG--------------------------- 330 (364)
T ss_dssp ECCCS--------SSEEEEEESCT-TCC-----HHHHHHTTTEECEECTTSTT---------------------------
T ss_pred ECCCC--------CeEEEEECCCc-HHH-----HHHHHHHCCcEEeeCcccCC---------------------------
Confidence 76432 67778877642 222 67778788999998865431
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+|++ +.+|+++++++|++++.
T Consensus 331 ------~~~~~iRis~~---~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 331 ------LDSRYYRVAIR---SAAQNERLLAALRNVLT 358 (364)
T ss_dssp ------CCTTEEEEECC---CHHHHHHHHHHHHHHC-
T ss_pred ------CCCCEEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 11378999987 78999999999998764
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=233.73 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=204.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC-c-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~ 183 (815)
..++|+.+++++|+++++ |++|+|+++++.+++.++. ++| | |++..+.|+++.......+... .++.+.+...+
T Consensus 60 ~~~lr~~la~~~~~~~~~--v~~~~G~~~ai~~~~~~~~-~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d 136 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPEQ--VLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLD 136 (356)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred HHHHHHHHHHHhCCChHH--EEEcCCHHHHHHHHHHHHh-CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 678999999999998877 9999999999999999997 889 8 8888888877665544432222 34444333455
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDL 260 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl 260 (815)
++.+++ .++ ++++|++++++||||.++|.+++.++++ .|+ +|+++|+|++++.... ..++
T Consensus 137 ~~~l~~-------~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~--------~~~-~~~~li~De~~~~~~~~~~~~~~ 199 (356)
T 1fg7_A 137 LQGISD-------KLD-GVKVVYVCSPNNPTGQLINPQDFRTLLE--------LTR-GKAIVVADEAYIEFCPQASLAGW 199 (356)
T ss_dssp HHHHHT-------SCT-TEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHT-TTCEEEEECTTGGGSGGGCSGGG
T ss_pred HHHHHH-------Hhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHH--------hCC-CCCEEEEEccchhhcCCCcHHHH
Confidence 565554 233 6899999999999999999999999988 455 8999999999874331 1222
Q ss_pred -CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 -KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 -~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
...+.++++.|+||+|| ++| +|++++++++++.+.... ...+.|..+..+
T Consensus 200 ~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a 252 (356)
T 1fg7_A 200 LAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVI--------------------------APYPLSTPVADI 252 (356)
T ss_dssp TTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHS--------------------------CSSCSCHHHHHH
T ss_pred HhhCCCEEEEecchHhhc-CchhhhEEEEeCHHHHHHHHHhc--------------------------CCCCCCHHHHHH
Confidence 33456789999999998 567 799999888766553211 111466666666
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 338 LKYGFDTMEK--KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 338 l~~al~~l~~--~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
+.++++.... .....++.+++++++.+.|+++ +++..+.+. .++++++.++ + ..++.+
T Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~-------~~~~~~~~~~--~-----~~~l~~ 312 (356)
T 1fg7_A 253 AAQALSPQGIVAMRERVAQIIAEREYLIAALKEI------PCVEQVFDS-------ETNYILARFK--A-----SSAVFK 312 (356)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCC-------SSSEEEEEET--T-----HHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhC------CCceEECCC-------CCeEEEEECC--C-----HHHHHH
Confidence 6666654221 2222377888899999999887 454333332 2678888775 2 235778
Q ss_pred hhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 416 ~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.|.++||.+++ |..|.. .+++|+|++ +.+|+++++++|+++
T Consensus 313 ~L~~~gI~v~~~g~~~~~-----------------------------------~~~iRis~~---~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 313 SLWDQGIILRDQNKQPSL-----------------------------------SGCLRITVG---TREESQRVIDALRAE 354 (356)
T ss_dssp HHHHTTEECEECTTSTTC-----------------------------------TTEEEEECC---CHHHHHHHHHHHHTC
T ss_pred HHHHCCEEEEECCCCCCC-----------------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 88999999998 654321 268999998 689999999999864
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=239.19 Aligned_cols=329 Identities=11% Similarity=0.153 Sum_probs=222.6
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHH
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~ 139 (815)
+.|..+... ..++.+.+++.+.+....+..+. ...+. .+++++.+++++| +++++ |++|+|+++|+.+
T Consensus 35 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~~~~----~~~l~~~l~~~~g~~~~~~~--v~~~~g~~~a~~~ 105 (391)
T 4dq6_A 35 LPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT---RPDSY----NESIVNWLYRRHNWKIKSEW--LIYSPGVIPAISL 105 (391)
T ss_dssp EECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC---CCHHH----HHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHH
T ss_pred eeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHH----HHHHHHHHHHHhCCCCcHHH--eEEcCChHHHHHH
Confidence 344443333 34577888887766542222211 12334 7788889999999 66766 9999999999999
Q ss_pred HHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 140 VSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 140 ~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
++.++. ++|| |++....|+++.......+... .++++ .++ .++++.+++++ .+ +++|++++++||
T Consensus 106 ~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l-------~~-~~~v~i~~p~np 176 (391)
T 4dq6_A 106 LINELT-KANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKI-------KD-VKLFILCNPHNP 176 (391)
T ss_dssp HHHHHS-CTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHC-------TT-EEEEEEESSBTT
T ss_pred HHHHhC-CCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHh-------hc-CCEEEEECCCCC
Confidence 999997 8998 8888888877655444332222 33443 112 25666766644 34 899999999999
Q ss_pred CccccChHH---HHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCCCCc-----EEEEccccccccCCc
Q psy16512 214 SGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQHQPD-----FISISFYKMFGYPTG 281 (815)
Q Consensus 214 tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~~~D-----~vv~S~~K~~g~p~G 281 (815)
||.++|.++ |.++|+ ++|+++|+|++++.. ..+.++..+..| +++.|+||++| ++|
T Consensus 177 tG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G 244 (391)
T 4dq6_A 177 VGRVWTKDELKKLGDICL-----------KHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFN-IAG 244 (391)
T ss_dssp TTBCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHT-CGG
T ss_pred CCcCcCHHHHHHHHHHHH-----------HcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhcc-Ccc
Confidence 999977555 555566 899999999998763 222333333333 88999999998 445
Q ss_pred --ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHH
Q psy16512 282 --LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFE 357 (815)
Q Consensus 282 --~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~ 357 (815)
+|++++++ ++.+.+.... ..+..++++..++.++.++++......... ++.++
T Consensus 245 ~r~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 301 (391)
T 4dq6_A 245 LQSSYVVLPDEKDYKLLDDAF-----------------------TRIDIKRNNCFSLVATEASYNNGESWLESFLEYLES 301 (391)
T ss_dssp GCCEEEECCSHHHHHHHHHHH-----------------------HHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHH-----------------------HhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 79998886 6655443221 112234677788877777776533222222 78888
Q ss_pred HHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhh
Q psy16512 358 LSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSC 435 (815)
Q Consensus 358 l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~ 435 (815)
+++++.+.|++ + |+++++.+.. +.++++.++... .+..++.+.|.++ ||.+++|..|...
T Consensus 302 ~~~~l~~~l~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~-- 363 (391)
T 4dq6_A 302 NIDFAIKYINENM------PKLKVRKPEG-------TYLLWVDFSALG---LSDEELESILVQKGKVALNQGNSFGIG-- 363 (391)
T ss_dssp HHHHHHHHHHHHC------TTSEECCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCTT--
T ss_pred HHHHHHHHHHhhC------CCCEecCCCc-------cEEEEEEhhhcC---CCHHHHHHHHHHhCCEEeeCchhhCCC--
Confidence 99999999987 5 6788876542 444457665311 2334577778776 9999988665421
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++ ++++++++++++|.+++
T Consensus 364 -------------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 364 -------------------------------GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp -------------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 1378999998 58999999999999875
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=243.26 Aligned_cols=358 Identities=13% Similarity=0.071 Sum_probs=233.3
Q ss_pred chhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 60 KDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 60 ~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
....||++...+..++.+++++....... +.+.. ..........+++++++++++|+++. ..++||+|+|+|+.+
T Consensus 99 ~~~~yl~~~~~~~~~~~v~~~~~~~~~n~---~~~~~-~~~~~~~~le~~~~~~la~~~g~~~~-~~~~~t~ggt~a~~~ 173 (497)
T 2qma_A 99 QHPDCIAHLHTPPLMPAVAAEAMIAALNQ---SMDSW-DQASSATYVEQKVVNWLCDKYDLSEK-ADGIFTSGGTQSNQM 173 (497)
T ss_dssp TSTTBCSSSCCCCBHHHHHHHHHHHHHCC---CTTCG-GGCHHHHHHHHHHHHHHHHHTTCCTT-CEEEEESSHHHHHHH
T ss_pred CCCCeeEeCCCCCcHHHHHHHHHHHhhcc---cccch-hhChHHHHHHHHHHHHHHHHhCCCCC-CCeEEcCCchHHHHH
Confidence 34689999999999999999886655421 22221 11111112255679999999999752 249999999999999
Q ss_pred HHhhhc---c---------CC------Cc--EEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhh
Q psy16512 140 VSEYFE---F---------NE------GS--FIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 140 ~~~al~---~---------~~------gd--vv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
++.++. . .+ |+ ++++..+|+++......++. .. .++.+.++.++++.++++|+.
T Consensus 174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~-- 251 (497)
T 2qma_A 174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQ-- 251 (497)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHH--
T ss_pred HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHH--
Confidence 888741 0 12 45 77777899998776666543 12 566666667788888876641
Q ss_pred hhcCCC--ccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC----CCCC-CCcEE
Q psy16512 196 ENMRHS--NSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD----LKQH-QPDFI 268 (815)
Q Consensus 196 ~~~~~~--t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d----l~~~-~~D~v 268 (815)
..... +.+|++++++|+||.+.|+++|.++|+ ++|+++|+|++++.+..+.+ +... .+|++
T Consensus 252 -~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~-----------~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i 319 (497)
T 2qma_A 252 -AKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAV-----------KHDMWMHVDGAYGGALILSSHKSRLKGVERAHSI 319 (497)
T ss_dssp -HHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEE
T ss_pred -HHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHH-----------HcCCEEEEehhhhHHHHhCcchHhhcCcccCCEE
Confidence 11122 448999999999999999999999999 89999999999988776554 2233 68999
Q ss_pred EEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecC-CcccccccCccccccCCCCChhHHHHHHHHHHHHH
Q psy16512 269 SISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMAN-ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346 (815)
Q Consensus 269 v~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~ 346 (815)
++|+||++++|.|+|+++++++. ++.+. ....+....... .+.. ....+ ++..+. ..++..+++.+.
T Consensus 320 ~~s~hK~l~~p~~~G~l~~~~~~~~~~~~---~~~~yl~~~~~~~~~~~------~~~~~-~~r~~~-al~~~~~l~~lg 388 (497)
T 2qma_A 320 SVDFHKLFYQTISCGALLVNDKSNFKFLL---HHADYLNREHDELPNLV------DKSIA-TTKRFD-ALKVFMTMQNVG 388 (497)
T ss_dssp EEETTTTTCCCSSCEEEEESCGGGGGGGC---C--------------------------C-CSCCCT-HHHHHHHHHHTC
T ss_pred EEcchhccCCCcceEEEEEeCHHHHHHhc---CCchhcCCccccCCCcc------ccCCC-CCCchh-HHHHHHHHHHhC
Confidence 99999999889899999998764 32221 111110000000 0000 00000 111111 223444555443
Q ss_pred hhh--hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC--HHHHHHhhhcCCc
Q psy16512 347 KKR--KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG--YSEVQNLANLKKI 422 (815)
Q Consensus 347 ~~~--~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~--~~~v~~~l~~~gI 422 (815)
..+ ...++..++++++.+.|+++ |+++++.+.. .++++|.+..... ..+ ...+.+.+.+.|+
T Consensus 389 ~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-------~~~v~f~~~~~~~-~~~~l~~~l~~~l~~~G~ 454 (497)
T 2qma_A 389 PKALGDMYDHLLAQTLEVADMIRTN------DQFELLAEPS-------LSTVLFRATHETA-DLDELNKALRLEALTRGI 454 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC------TTEEECSCCS-------SSEEEEEECCSSS-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEEcCCC-------ceEEEEEEcCCcc-CHHHHHHHHHHHHHhCCC
Confidence 222 12288899999999999988 7899875432 6799998864321 110 1235566667787
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec-cCCCCHHHHHHHHHHHHHHHh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY-GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+.++... .+ .+++|+++ ++++|++|+++++++|++++.
T Consensus 455 ~~~~~~~~---------------------------------~g--~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 494 (497)
T 2qma_A 455 AVLGETIV---------------------------------DG--KTALKFTILNPCLTTSDFESLLSKINMLAV 494 (497)
T ss_dssp CBCEEEEE---------------------------------TT--EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeeEE---------------------------------CC--EEEEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 66432110 01 37899998 889999999999999998764
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.3e-25 Score=237.49 Aligned_cols=304 Identities=14% Similarity=0.084 Sum_probs=199.9
Q ss_pred HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhhcc
Q psy16512 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 109 ~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~~~ 184 (815)
++++.+++++|++ +. +++++| ++|+.+++.++. ++|| ++++..+|+++.... ..++..| ...++. .++
T Consensus 2 ~l~~~la~~~g~~-~~--i~~~sG-~~a~~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~d~ 73 (331)
T 1pff_A 2 ALEGKIAKLEHAE-AC--AATASG-MGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM---AVP 73 (331)
T ss_dssp HHHHHHHHHHTCS-EE--EEESSH-HHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---TST
T ss_pred hHHHHHHHHhCCC-eE--EEeCCh-HHHHHHHHHHhc-CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---CCH
Confidence 5789999999986 32 566555 899999999886 8898 999999998876543 3244455 333332 344
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-CCeEEEEecccccCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
+.+++ .+++++++|++++++||||.+.|+++|.++|+ + +|+++++|++++.+....++ .+
T Consensus 74 ~~l~~-------~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~-----------~~~~~~li~D~a~~~~~~~~~~-~~ 134 (331)
T 1pff_A 74 GNIEK-------HLKPNTRIVYFETPANPTLKVIDIEDAVKQAR-----------KQKDILVIVDNTFASPILTNPL-DL 134 (331)
T ss_dssp THHHH-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT-----------TSSSCEEEEECTTTHHHHCCGG-GG
T ss_pred HHHHH-------hhcCCCeEEEEECCCCCcCcccCHHHHHHHHh-----------hhcCCEEEEECCCcccccCChh-hc
Confidence 45544 33467999999999999999999999999999 8 99999999999887643334 46
Q ss_pred CCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
++|+++.|+||+|++|.+ .|++++++ ++++.+++...++ ..++.+....+++..
T Consensus 135 ~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~ 191 (331)
T 1pff_A 135 GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDI-----------------------TGAIISPHDAWLITR 191 (331)
T ss_dssp TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCC-----------------------CCCCCCHHHHHHHHH
T ss_pred CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhh-----------------------cCCCCCHHHHHHHHc
Confidence 799999999999997766 79999998 7766554432110 123455555555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
+++.+... .++.....+.+.+.+++.. + ....|+++++.+.. ...+++++|.+. + ..+
T Consensus 192 ~l~~~~~~---~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~--~-----~~~ 257 (331)
T 1pff_A 192 GTLTLDMR---VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQM----KMFGSMIAFDVD--G-----LEK 257 (331)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHC----SSCCSEEEEECS--S-----HHH
T ss_pred CcchHHHH---HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEEC--C-----HHH
Confidence 55543321 2333444444445554331 0 00112333332211 235789998875 1 235
Q ss_pred HHHhhhcCCcEeccC---------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 413 VQNLANLKKIQLRTG---------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 413 v~~~l~~~gI~v~~g---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
+.+.|.++||.++.. ++|..+.. ..+... .+..+ |...+++|+|++.++++++
T Consensus 258 ~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~---~~~~~~-~~~~~--------------g~~~~~iRis~~~~~t~~~ 319 (331)
T 1pff_A 258 AKKVLDNCHVVSLAVSLGGPESLIQHPASMTH---AGVPKE-EREAA--------------GLTDNLIRLSVGCENVQDI 319 (331)
T ss_dssp HHHHHHTCSSSEECSSCCSSSCEEECHHHHTS---TTSCHH-HHHHT--------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHhCCCceeccCCCCcceeeecchhhcc---cccCHH-HHHhc--------------CCCCCeEEEEEecCCHHHH
Confidence 888899999977654 24432211 011111 11111 2334899999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQY 494 (815)
Q Consensus 484 i~~lv~~L~~~ 494 (815)
+++++++|+++
T Consensus 320 i~~l~~~l~~~ 330 (331)
T 1pff_A 320 IDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=237.68 Aligned_cols=331 Identities=12% Similarity=0.079 Sum_probs=222.2
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCcee-EEecCCchh
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYS-VIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~-iv~t~g~t~ 135 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++|+.+++++ |.+.+..+ |++|+|+++
T Consensus 28 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (389)
T 1gd9_A 28 VISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP-----NIG----LLELREAIAEKLKKQNGIEADPKTEIMVLLGANQ 98 (389)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTH
T ss_pred eEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-----CCC----cHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHH
Confidence 3455554443 24567777777666432111111 122 567778888877 85322225 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
|+.+++.++. ++|| |++....|+++.......+... .++.+.++ .++++.+++++ .+++++|++++++
T Consensus 99 a~~~~~~~~~-~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~~~ 170 (389)
T 1gd9_A 99 AFLMGLSAFL-KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV-------TDKTRALIINSPC 170 (389)
T ss_dssp HHHHHHTTTC-CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC-------CTTEEEEEEESSC
T ss_pred HHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc-------CcCceEEEEECCC
Confidence 9999999997 8898 8899999988766554443332 56666432 34666666543 3578999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC----CCCcEEEEccccccccCC
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~----~~~D~vv~S~~K~~g~p~ 280 (815)
||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++
T Consensus 171 nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 238 (389)
T 1gd9_A 171 NPTGAVLTKKDLEEIADFVV-----------EHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MT 238 (389)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CG
T ss_pred CCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC-Cc
Confidence 99999997 556666776 89999999999876542 222322 346899999999998 66
Q ss_pred c--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh--hhhhH-HHH
Q psy16512 281 G--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK--KRKSF-TNA 355 (815)
Q Consensus 281 G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~--~~~~~-~~~ 355 (815)
| +|++++++++++.+.+... ...++.+.....++.++++.... ....+ ++.
T Consensus 239 G~r~G~~~~~~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 294 (389)
T 1gd9_A 239 GWRLGFVAAPSWIIERMVKFQM------------------------YNATCPVTFIQYAAAKALKDERSWKAVEEMRKEY 294 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHT------------------------TTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECHHHHHHHHHHHh------------------------hhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 7 6999998877665532211 11235566677777667664332 11222 778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGS 434 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~ 434 (815)
.++++++.+.|+++ +++++.+.. +.++++.++.. + .+..++.+.|. ++||.+++|..|...
T Consensus 295 ~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~~- 356 (389)
T 1gd9_A 295 DRRRKLVWKRLNEM-------GLPTVKPKG-------AFYIFPRIRDT-G--LTSKKFSELMLKEARVAVVPGSAFGKA- 356 (389)
T ss_dssp HHHHHHHHHHHHHT-------TCCCCCCCB-------TTEECCBCGGG-T--CCHHHHHHHHHHHTCEECEEGGGGCGG-
T ss_pred HHHHHHHHHHHHHc-------CCeecCCCe-------eeEEEEeccCC-C--CCHHHHHHHHHHhCCEEEeCchhhCCC-
Confidence 88899999999876 455544321 44555565421 1 23345777776 899999988655421
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. ++++++++++.|.+++.+
T Consensus 357 --------------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 357 --------------------------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp --------------------------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 03789999985 899999999999998754
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=235.06 Aligned_cols=340 Identities=13% Similarity=0.114 Sum_probs=229.4
Q ss_pred ccCCCcceeeeccccccchhhhhhhhcc---c-ccchhhHHHHHHHHhhccccCCCChh--hhhhhhhhhHHHHHHHHHh
Q psy16512 43 KTKFGYHIIMVEGKNHLKDICYLDYTGA---G-VYSQSQMNQTIEQLKENIFSHPHGNS--VLSDFCVSEIDQMRTKILQ 116 (815)
Q Consensus 43 ~t~fGyhIi~ved~~~~~~~iyLd~a~~---~-~~p~~v~~al~~~l~~~~~~np~s~~--~~~~~~~~~~~~~r~~la~ 116 (815)
...-|.++. . ++..|+|.... + ..++.+.+++.+.+......++.+.+ ..... ..++++.+++
T Consensus 27 ~~~~g~~~~-~------~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~----~~~l~~~la~ 95 (384)
T 1bs0_A 27 AQGAGRWLV-A------DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVV----HQALEEELAE 95 (384)
T ss_dssp SBCSSSEEE-E------TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHH----HHHHHHHHHH
T ss_pred cCCCCceEE-E------CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHH----HHHHHHHHHH
Confidence 445565544 1 23345565543 2 35677888877766542222222111 22234 7899999999
Q ss_pred HcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhh
Q psy16512 117 YFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQE 193 (815)
Q Consensus 117 ~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~ 193 (815)
++|++ + .++++++++|+..++.++. ++|| |++....|+++...... .| .+.++. .+.+.++++++
T Consensus 96 ~~g~~-~---~i~~~sGt~a~~~~~~~~~-~~gd~v~~~~~~~~~~~~~~~~---~g~~~~~~~~---~d~~~l~~~l~- 163 (384)
T 1bs0_A 96 WLGYS-R---ALLFISGFAANQAVIAAMM-AKEDRIAADRLSHASLLEAASL---SPSQLRRFAH---NDVTHLARLLA- 163 (384)
T ss_dssp HHTCS-E---EEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHT---SSSEEEEECT---TCHHHHHHHHH-
T ss_pred HhCCC-c---EEEeCCcHHHHHHHHHHhC-CCCcEEEEcccccHHHHHHHHH---cCCCEEEeCC---CCHHHHHHHHH-
Confidence 99985 2 4555555899999999987 8999 77888888876554443 34 334432 34455554442
Q ss_pred hhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CC---CCCCCCcE
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LD---LKQHQPDF 267 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~d---l~~~~~D~ 267 (815)
...+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.+... .. .-..++|+
T Consensus 164 ---~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di 229 (384)
T 1bs0_A 164 ---SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ-----------QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPEL 229 (384)
T ss_dssp ---SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSE
T ss_pred ---hcCCCCeEEEEeCCCCCCCCccCHHHHHHHHH-----------HcCcEEEEECCcccceecCCCCchHHhcCCCCcE
Confidence 11124789999999999999999999999999 899999999999766421 11 11135899
Q ss_pred EEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh
Q psy16512 268 ISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347 (815)
Q Consensus 268 vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~ 347 (815)
++.|+||+++ |+| |++++++++++.+...... ....++.+...+.++.++++.+..
T Consensus 230 ~~~s~sK~~~-~~G-G~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 230 LVVTFGKGFG-VSG-AAVLCSSTVADYLLQFARH----------------------LIYSTSMPPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEESSSTTS-SCC-EEEEECHHHHHHHHHHCHH----------------------HHSSBCCCHHHHHHHHHHHHHHHS
T ss_pred EEeeccchhh-ccC-cEEEeCHHHHHHHHHhchh----------------------hhcCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999 878 9999988776654321100 011225677788888888887763
Q ss_pred --hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 348 --KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 348 --~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.....++.+++++++.+.|+++ ++++..+ .++++++.++.. .+..++.+.|.++||.++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~--------~~~~~~~~~~~~----~~~~~l~~~l~~~gi~v~ 346 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDL-------PFTLADS--------CSAIQPLIVGDN----SRALQLAEKLRQQGCWVT 346 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS-------SCEECSC--------CSSBCCEEEESH----HHHHHHHHHHHHTTEECC
T ss_pred cccHHHHHHHHHHHHHHHHHHHhc-------CCcccCC--------CCCEEEEEeCCH----HHHHHHHHHHHHCCcEEE
Confidence 2223388899999999999886 4666532 256777777521 123357788888899998
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+|..+..+ ...+++|++++.+++++++++++++|+++
T Consensus 347 ~~~~~~~~--------------------------------~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 347 AIRPPTVP--------------------------------AGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp EECTTSSC--------------------------------TTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred eecCCCCC--------------------------------CCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 87542110 01378999999999999999999999874
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=238.40 Aligned_cols=317 Identities=14% Similarity=0.108 Sum_probs=218.7
Q ss_pred hhhhhhhcccc-cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAGV-YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~-~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t 134 (815)
.++|+.+.... .++.+.+++.+.+.......+. ... ..++|+.++++++ +++++ |++|+|++
T Consensus 31 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~~----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~~ 99 (370)
T 2z61_A 31 VIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTD-----SRG----ILELREKISELYKDKYKADIIPDN--IIITGGSS 99 (370)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHSSCCCCGGG--EEEESSHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCChhh--EEECCChH
Confidence 34555544432 4567777776666432111111 122 5678888888774 56666 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+|+.+++.++. ++|| |++....|+++...... .| .+.++ .+++.+++++ .+++++|++++++
T Consensus 100 ~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~---~g~~~~~v~----~d~~~l~~~l-------~~~~~~v~~~~p~ 164 (370)
T 2z61_A 100 LGLFFALSSII-DDGDEVLIQNPCYPCYKNFIRF---LGAKPVFCD----FTVESLEEAL-------SDKTKAIIINSPS 164 (370)
T ss_dssp HHHHHHHHHHC-CTTCEEEEESSCCTHHHHHHHH---TTCEEEEEC----SSHHHHHHHC-------CSSEEEEEEESSC
T ss_pred HHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHH---cCCEEEEeC----CCHHHHHHhc-------ccCceEEEEcCCC
Confidence 99999999997 8898 88999888877654433 44 33333 4555555433 3578999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC----CCCcEEEEccccccccCCc--c
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ----HQPDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~----~~~D~vv~S~~K~~g~p~G--~ 282 (815)
||||.++|++ |.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++| +
T Consensus 165 nptG~~~~~~-l~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~ 231 (370)
T 2z61_A 165 NPLGEVIDRE-IYEFAY-----------ENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYA-MTGWRI 231 (370)
T ss_dssp TTTCCCCCHH-HHHHHH-----------HHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTT-CGGGCC
T ss_pred CCcCcccCHH-HHHHHH-----------HcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccC-CccceE
Confidence 9999999999 999999 89999999999876532 223322 357899999999998 667 8
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-HHhhhhh-HHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-MEKKRKS-FTNAFELSQ 360 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l~~~~~~-~~~~~~l~~ 360 (815)
|++++++++++.+.... ....++.+.....++.++++. ....... .+++.++++
T Consensus 232 G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (370)
T 2z61_A 232 GYVISNDEIIEAILKLQ------------------------QNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRR 287 (370)
T ss_dssp EEEECCHHHHHHHHHHH------------------------HHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHH------------------------hhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999987766553321 111235677777777677654 2222122 277888899
Q ss_pred HHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhc
Q psy16512 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFL 439 (815)
Q Consensus 361 ~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~ 439 (815)
++.+.|+++ +++++.+.. +.++++.++. +..++.+.|. ++||.+++|..|...
T Consensus 288 ~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~f~~~------ 341 (370)
T 2z61_A 288 LVLKYVKDF-------GWEVNNPIG-------AYYVFPNIGE------DGREFAYKLLKEKFVALTPGIGFGSK------ 341 (370)
T ss_dssp HHHHHHHHT-------TCBCCCCCB-------TTEECCBCSS------CHHHHHHHHHHHHCEECEEGGGGCGG------
T ss_pred HHHHHHHHc-------CCeecCCCc-------ceEEEEecCC------CHHHHHHHHHHhCCEEEeCchhhCCC------
Confidence 999999876 455543321 4455555543 2335777775 789999988655320
Q ss_pred CCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 440 GLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 440 g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|++++ +++++++++++.|.+++.
T Consensus 342 ---------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 342 ---------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp ---------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred ---------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 0378999999 689999999999998764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-23 Score=238.08 Aligned_cols=347 Identities=10% Similarity=0.004 Sum_probs=230.3
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~ 133 (815)
.+.|..+... ..++.+.+++.+.+.... ...+. ... ..++|+.++++++ +++++ |++|+|+
T Consensus 46 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~~~~~~g~~~~~~~--i~~t~g~ 114 (437)
T 3g0t_A 46 FCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPN-----LDG----LPELKQEASRFAKLFVNIDIPARA--CVPTVGS 114 (437)
T ss_dssp CEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHH
T ss_pred EEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCC-----CCC----hHHHHHHHHHHHHHhhCCCCCccc--EEEeCCH
Confidence 3444444433 345777777777665322 22221 112 5678888888877 56666 9999999
Q ss_pred hhhHHHHHhhhcc-CCCc---EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 134 TSAIKTVSEYFEF-NEGS---FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 134 t~al~~~~~al~~-~~gd---vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+|+.+++.++.+ ++|| |++...+|+++.......+... .++++.++ .++++.++++++ ++++++|++
T Consensus 115 t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~------~~~~~~v~l 188 (437)
T 3g0t_A 115 MQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ------TGQFCSIIY 188 (437)
T ss_dssp HHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT------TTCCCEEEE
T ss_pred HHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh------cCCceEEEE
Confidence 9999999999852 5666 7888888877665555444333 66665433 367777766442 467999999
Q ss_pred ecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC----CC--------CCCCC-CCCcEEEEc
Q psy16512 208 PAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NM--------LDLKQ-HQPDFISIS 271 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~--------~dl~~-~~~D~vv~S 271 (815)
++++||||.++|.++ |.++|+ ++|+++|+|++++... .+ .++.. .+.++++.|
T Consensus 189 ~~p~nptG~~~~~~~l~~i~~~a~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 257 (437)
T 3g0t_A 189 SNPNNPTWQCMTDEELRIIGELAT-----------KHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALS 257 (437)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEE
T ss_pred eCCCCCCCCcCCHHHHHHHHHHHH-----------HCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEc
Confidence 999999999999665 556666 8999999999987422 12 12222 456799999
Q ss_pred cccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-
Q psy16512 272 FYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK- 347 (815)
Q Consensus 272 ~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~- 347 (815)
+||++| ++| +|++++++++++ .+.......+... . .+. .-........++.+..+..++.++++....
T Consensus 258 ~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~--~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 329 (437)
T 3g0t_A 258 SSKAFS-YAGQRIGVLMISGKLYEREYPDLEESFGRLR----F-GEA--LSSSALYALSSGATHSAQWGMAAMLKACNDG 329 (437)
T ss_dssp STTTTS-CGGGCCEEEEECHHHHHCBCGGGHHHHSCSB----H-HHH--HHTTHHHHHHSSSCHHHHHHHHHHHHHHHTT
T ss_pred CccCCC-CccceeEEEEECHHHhhhhhhcccccccccc----h-hHH--HHHHHHhhhcCCCCHHHHHHHHHHHhCcHhH
Confidence 999998 556 899999988766 5211110000000 0 000 000001222456777888888888876553
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc------CC-CCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 348 ---KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY------HD-TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 348 ---~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~------~~-~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
.....+++.++++++.+.|+++ +++++ .+ . .+.++++.+++ .+..++.+.|
T Consensus 330 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~L 390 (437)
T 3g0t_A 330 EYNFRDSVIEYGRKARIMKKMFLDN-------GFNIVYDKDGNEPLA-------DGFYFTVGYKG-----MDSSKLIEKF 390 (437)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTT-------TEEESSCEETTEECC-------SSSEEEEEETT-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-------CCEEeccccCCCCCc-------eeEEEEEecCC-----CCHHHHHHHH
Confidence 2222388899999999999887 67777 23 2 26778888763 2334688888
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.++||.+++|..|... ..+++|+|++. .+++++++++++|++++.+
T Consensus 391 ~~~gi~v~~~~~~~~~---------------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 391 VRYGMCAITLKTTGSK---------------------------------RNEAMRICTSL-LPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HHTTEECEESTTTTCC---------------------------------CTTCEEEECSS-SCGGGHHHHHHHHHHHHHH
T ss_pred HHcCeEEeeccccCCC---------------------------------CCCEEEEEEec-CCHHHHHHHHHHHHHHHhc
Confidence 8899999988665321 12679999994 4899999999999997654
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=244.27 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=221.8
Q ss_pred HHHHHHHHHhHcCCC--CCceeEEecCCchhhHHHHHhhhcc----CCC---c-EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 107 IDQMRTKILQYFNTD--SDHYSVIFTSGATSAIKTVSEYFEF----NEG---S-FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g~~--~~~~~iv~t~g~t~al~~~~~al~~----~~g---d-vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
.+++++++++++|++ ++. +++|+|+|+|+.+++.++.. .+| + |+++...|+++.......+... .++
T Consensus 109 ~~~~~~~la~~~g~~~~~~~--~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~ 186 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGC--GTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVE 186 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCC--EEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHHHHHHSCCEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCe--EEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHHHHHHcCCeEEEEe
Confidence 678999999999998 444 99999999999999998851 145 5 8899999988766555543222 556
Q ss_pred cCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 176 FSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 176 ~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
++. ++.++++++++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+
T Consensus 187 ~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~p~nptG~~~~l~~i~~la~-----------~~g~~livD~a~~~~ 248 (497)
T 3mc6_A 187 LDPTTYQVDLGKVKKFI-------NKNTVLLVGSAPNFPHGIADDIEGLGKIAQ-----------KYKLPLHVDSCLGSF 248 (497)
T ss_dssp BCTTTCSBCTTTTGGGC-------CSSEEEEEEETTCTTTCCCCSCTTTTTHHH-----------HTTCCEEEETTTTHH
T ss_pred cCcccCcCCHHHHHHHH-------hhCCEEEEEECCCCCCCcCCCHHHHHHHHH-----------HhCCEEEEECcchhh
Confidence 665 4567788777644 467999999999999999999999999999 899999999998732
Q ss_pred C-----------C-CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc----ccccCceEEEEecCCcccccc
Q psy16512 255 S-----------N-MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK----TFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 255 ~-----------~-~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~----~~~g~~~~~~~~~~~~~~~~~ 318 (815)
. . +++....++|+++.|+||++++|.|+|+++++++.+..... .+.++..
T Consensus 249 ~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 314 (497)
T 3mc6_A 249 IVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLY-------------- 314 (497)
T ss_dssp HHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCTTSCB--------------
T ss_pred hhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhcccccccCCCc--------------
Confidence 2 2 35566678999999999997668899999998876543321 1111110
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
......|+.+...++++.++++.+...+. .+ ++..++++++.+.|++ + |+++++.+. .+++
T Consensus 315 ---~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~------~g~~~~~~~-------~~~~ 378 (497)
T 3mc6_A 315 ---GSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENI------PDLDIMGNP-------RYSV 378 (497)
T ss_dssp ---CCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTCEECSCC-------CSSE
T ss_pred ---CCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCC-------CeeE
Confidence 01122456666667778888887765542 22 8889999999999998 6 788888653 2678
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+.|...+. +..++.+.|.++||.++.+.. ...+|+++
T Consensus 379 v~~~~~~~-----~~~~l~~~L~~~Gi~v~~~~~--------------------------------------~~~~ri~~ 415 (497)
T 3mc6_A 379 ISFSSKTL-----NIHELSDRLSKKGWHFNALQK--------------------------------------PVALHMAF 415 (497)
T ss_dssp EEEECTTT-----THHHHHHHHHTTTCBCEECCS--------------------------------------SCCEEEEC
T ss_pred EEEeCCCC-----CHHHHHHHHHhCCEEEecCCC--------------------------------------CCeEEEEE
Confidence 88875432 334688999999998865421 24589998
Q ss_pred cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~~ 497 (815)
. ..+++++++++++|++++.+
T Consensus 416 ~-~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 416 T-RLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp C-TTTTCTHHHHHHHHHHHHHH
T ss_pred e-CCCHHHHHHHHHHHHHHHHH
Confidence 8 67999999999999998754
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=235.44 Aligned_cols=318 Identities=9% Similarity=0.070 Sum_probs=216.5
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
..++.+.+++.+.+.......+.. ..++|+.++++++ +++++ |++|+|+++|+.+++.++.
T Consensus 36 ~~~~~v~~a~~~~~~~~~~~y~~~-----------~~~lr~~la~~~~~~~~~~~~~~~--i~~t~g~~~a~~~~~~~~~ 102 (377)
T 3fdb_A 36 STCPAVLQAITDAVQREAFGYQPD-----------GSLLSQATAEFYADRYGYQARPEW--IFPIPDVVRGLYIAIDHFT 102 (377)
T ss_dssp CCCHHHHHHHHHHHHTTCCSSCCS-----------SCCHHHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCC-----------CHHHHHHHHHHHHHHhCCCCCHHH--EEEeCChHHHHHHHHHHhc
Confidence 356778888877665422222221 1245566666655 66666 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC 223 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I 223 (815)
++|| |++....|+++.......+... .++.+.+ ++++.++++++ ++++++++++++||||.++|.+++
T Consensus 103 -~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~~~l~-------~~~~~v~i~~p~nptG~~~~~~~l 172 (377)
T 3fdb_A 103 -PAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVEKGFQ-------AGARSILLCNPYNPLGMVFAPEWL 172 (377)
T ss_dssp -CTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHHHHHH-------TTCCEEEEESSBTTTTBCCCHHHH
T ss_pred -CCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHHHHhc-------cCCCEEEEeCCCCCCCCCCCHHHH
Confidence 8998 8888988888766555443333 6666655 67777776543 568999999999999999987776
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCC---CCCcEEEEccccccccCCc--ceEEEE-ecccc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQ---HQPDFISISFYKMFGYPTG--LGALIV-KQKSA 292 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~---~~~D~vv~S~~K~~g~p~G--~G~l~~-~~~~~ 292 (815)
.++++ .|+++|+++|+|++++... .+.++.. .+.++++.|+||++| ++| +|++++ ++++.
T Consensus 173 ~~l~~--------~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~ 243 (377)
T 3fdb_A 173 NELCD--------LAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWN-IAGLKCAQIIFSNPSDA 243 (377)
T ss_dssp HHHHH--------HHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTT-CGGGCCEEEECCSHHHH
T ss_pred HHHHH--------HHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhcc-CcchhheEEEeCCHHHH
Confidence 65543 2338999999999987632 2222222 234488999999998 446 798887 45555
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHh-cc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQ-LS 370 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~-l~ 370 (815)
+.+.... ....++.+.++..++.++++........ .++.+++++++.+.|++ +
T Consensus 244 ~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~- 298 (377)
T 3fdb_A 244 EHWQQLS------------------------PVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRI- 298 (377)
T ss_dssp HHHHHSC------------------------HHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHH------------------------HhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence 4442211 1122466777777777777653222122 38888999999999988 6
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK-DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~-~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|+++++.+.. +.++++.++.. .... .+..+++++||.+++|..|...
T Consensus 299 -----~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~l~~~~gi~v~~g~~~~~~---------------- 346 (377)
T 3fdb_A 299 -----PGAKITPMQA-------TYLMWIDFRDTTIEGS----PSEFFIEKAKVAMNDGAWFGED---------------- 346 (377)
T ss_dssp -----TTCEECCCSB-------CSEEEEECTTSCCCSC----HHHHHHHHHCEECEEGGGGCGG----------------
T ss_pred -----CCceEecCCe-------eEEEEEECcccCCCHH----HHHHHHHhCCEEecCChhccCC----------------
Confidence 6788876542 44556777642 1222 2444456669999998766532
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. +++++++++++|.+++.+
T Consensus 347 -----------------~~~~~Ris~~~--~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 347 -----------------GTGFCRLNFAT--SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp -----------------GTTEEEEECCS--CHHHHHHHHHHHHHHHTT
T ss_pred -----------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 13789999984 899999999999998753
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=230.56 Aligned_cols=320 Identities=12% Similarity=0.064 Sum_probs=222.6
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
..+.|..+... ..++.+.+++.+.+.. ...+|+ .. ..++|+++++++++++++ |++|+|+|+|+.+
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~------~~----~~~l~~~la~~~~~~~~~--i~~~~g~t~al~~ 93 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVYPD------VN----YRRLNKSIENYLKLKDIG--IVLGNGASEIIEL 93 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSCCC------TT----CHHHHHHHHHHHTCCSCE--EEEESSHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCC------cc----HHHHHHHHHHHhCCCcce--EEEcCCHHHHHHH
Confidence 34555544333 3567777777766553 222232 12 678999999999998876 9999999999999
Q ss_pred HHhhhccCCCcEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 140 VSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 140 ~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++.++ ..|++....|+++.......+... .++++.++.++++.+++++ ++ +++|++++++||||.++
T Consensus 94 ~~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l-------~~-~~~v~i~~p~nptG~~~ 161 (361)
T 3ftb_A 94 SISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKI-------DD-VDSVIIGNPNNPNGGLI 161 (361)
T ss_dssp HHTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHT-------TT-CSEEEEETTBTTTTBCC
T ss_pred HHHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhc-------cC-CCEEEEeCCCCCCCCCC
Confidence 99887 338888888877655544433222 6677766566666666543 34 89999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCC-CCCCCcEEEEccccccccCCc--ceEEE-Eec
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDL-KQHQPDFISISFYKMFGYPTG--LGALI-VKQ 289 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~-~~~ 289 (815)
|.+++.++++ .|+++|+++|+|++++..... ... ...+..+++.|+||.+| ++| +|+++ .++
T Consensus 162 ~~~~l~~i~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~g~~~~~~~ 232 (361)
T 3ftb_A 162 NKEKFIHVLK--------LAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFA-MPGIRFGYGITNNK 232 (361)
T ss_dssp CHHHHHHHHH--------HHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTS-CGGGCCEEEEESCH
T ss_pred CHHHHHHHHH--------HhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcC-CCCcceeEEEeCCH
Confidence 9777555554 334899999999998743321 111 12234577889999998 445 79988 566
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
++.+.+... ...++++..+..++.++++.........++..++++++.+.|+++
T Consensus 233 ~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 286 (361)
T 3ftb_A 233 EIAAKIKAK--------------------------QNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKI 286 (361)
T ss_dssp HHHHHHHTT--------------------------SCTTCSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh--------------------------CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 665544221 112367778888777777642222222378888999999999988
Q ss_pred cccCCCCcEE-EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 370 SYSNGQPLVE-LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 370 ~~~~~~p~~~-l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
|++. ++.+. ++++++.++.. +..++.+.|.++||.+++|..|..
T Consensus 287 ------~~~~~~~~~~--------~~~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~---------------- 331 (361)
T 3ftb_A 287 ------GFIKRVFSPH--------ANFVLCRLENI-----SGEKLYDSLLKEDIVIRRCCNFIG---------------- 331 (361)
T ss_dssp ------SSEEEEECCS--------SSEEEEEESSS-----CHHHHHHHHHTTTEECEECTTSTT----------------
T ss_pred ------CCCceecCCC--------CeEEEEEcCCC-----CHHHHHHHHHHCCeEEeeCccCCC----------------
Confidence 7888 66443 67788887652 334588888888999998876531
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+++|+|++ +.+++++++++|+++.
T Consensus 332 -----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~ 358 (361)
T 3ftb_A 332 -----------------LDDSFVRFAIK---DEKKNTKFLRALKGVE 358 (361)
T ss_dssp -----------------CCTTEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 11479999998 8899999999998865
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-25 Score=250.24 Aligned_cols=349 Identities=10% Similarity=0.057 Sum_probs=234.9
Q ss_pred hcccccchhhHHHHHHHHhhccc--cCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCc--eeEEecCCchhhHHHHHh
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENIF--SHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDH--YSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~~--~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~--~~iv~t~g~t~al~~~~~ 142 (815)
++..+.++.+.+++.+.+.. .+ ++|++. +..........+.+++++++++|+++++ ..|++++|+ +|+.+++.
T Consensus 51 a~e~~~~~~V~eA~~~~l~~-~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~ 128 (483)
T 1rv3_A 51 ASENFASRAVLEALGSCLNN-KYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYT 128 (483)
T ss_dssp TTCCCCCHHHHHHHTSGGGT-CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhc-cCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHH
Confidence 34556788888888776654 23 566543 1111221122567889999999998754 237787777 88888899
Q ss_pred hhccCCCc-EEEecCCCcchhhH--------HHHhhccc-eEEc--C-chhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGM--------RELVKTNQ-IYSF--S-VDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~--------~~~~~~~g-~v~~--~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
++. ++|| |+++..+|+++... ....+... .+++ + .++.+|++.++++++ .++|++|++ +
T Consensus 129 all-~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~------~~~tklIi~-~ 200 (483)
T 1rv3_A 129 ALV-EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR------LFHPKLIIA-G 200 (483)
T ss_dssp HHT-CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEE-C
T ss_pred Hhc-CCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHHHHHHh------hcCCcEEEE-e
Confidence 987 9999 88888888876531 12222112 4444 4 345678888776543 146899999 8
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEccccccccCCcceEEE
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
++|++ .+.|+++|.++|+ ++|+++++|++|+.|....++... ++|++++|+||+|++|.| |+++
T Consensus 201 ~sn~~-~~~dl~~i~~ia~-----------~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~ 267 (483)
T 1rv3_A 201 TSCYS-RNLDYGRLRKIAD-----------ENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIF 267 (483)
T ss_dssp CSSCC-SCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEE
T ss_pred CCcCC-CcCCHHHHHHHHH-----------HcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEE
Confidence 99998 9999999999999 899999999999876544333333 689999999999877988 9999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~ 364 (815)
++++... ++ ..++... .+ ...............|+++...+.++.++++.+...+ ..+ ++..++++++.+
T Consensus 268 ~~~~~~~-~~--~~~g~~~----~y-~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~ 339 (483)
T 1rv3_A 268 YRRGVRS-VD--PKTGKEI----LY-NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSA 339 (483)
T ss_dssp EECSBCC----------CC----BC-CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred Ecchhhh-hc--cccCcch----hh-HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 9987542 22 1111100 00 0000000000011267888888999888888765322 233 888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec----cCccCCchhhhhhcC
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR----TGCHCNPGSCQRFLG 440 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~----~g~~~~~~~~~~~~g 440 (815)
.|.++ +++++.+.. ...++.+.+... .++..++.+.|.+.||.++ +|..|. +
T Consensus 340 ~L~~~-------g~~~~~~~~------~~~~~~v~~~~~---g~~~~~~~~~L~~~gI~v~~~~~pg~~~~-------~- 395 (483)
T 1rv3_A 340 ALVEL-------GYKIVTGGS------DNHLILVDLRSK---GTDGGRAEKVLEACSIACNKNTCPGDKSA-------L- 395 (483)
T ss_dssp HHHHT-------TCEEGGGSC------SSSEEEEEGGGG---TCCHHHHHHHHHHTTEECEEECCSSCSCT-------T-
T ss_pred HHHhc-------CCEeccCCC------CCceEEEeccCC---CCCHHHHHHHHHhCCcEEecCCCCCCCcC-------C-
Confidence 99887 678876431 124555555421 1234468888999999998 654321 1
Q ss_pred CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHHhh
Q psy16512 441 LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 441 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~~~ 497 (815)
..+++|||++.+++ ++|+++++++|.+++..
T Consensus 396 --------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 396 --------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp --------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 13789999998888 99999999999998765
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=235.38 Aligned_cols=306 Identities=10% Similarity=0.033 Sum_probs=205.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++. +++++|+++|+.+++.++. ++|| ||++...|++..... ..++..| ...++.+
T Consensus 84 ~~~le~~lA~l~g~~~----~i~~ssGt~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~--- 155 (415)
T 2fq6_A 84 HFSLQQAMCELEGGAG----CVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL--- 155 (415)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHTTC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCCe----EEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC---
Confidence 7899999999999852 5566788999999999987 8999 889998998876543 4455556 3334332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl 260 (815)
++++++++| +++|++|++++++||+|.+.|+++|+++|+ + +|+++++|++++.+.....+
T Consensus 156 d~~~le~ai-------~~~tklV~~e~~~NptG~v~dl~~I~~la~-----------~~~~g~~livD~a~a~~~~~~p~ 217 (415)
T 2fq6_A 156 IGADIVKHL-------QPNTKIVFLESPGSITMEVHDVPAIVAAVR-----------SVVPDAIIMIDNTWAAGVLFKAL 217 (415)
T ss_dssp CGGGGGGGC-------CTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHCTTCEEEEECTTTTTTSSCGG
T ss_pred CHHHHHHhh-------ccCCcEEEEECCCCCCCEeecHHHHHHHHH-----------hhcCCCEEEEECCCcccccCCcc
Confidence 555555533 467999999999999999999999999999 8 99999999999866432222
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|++++|+||+++++.+ .|+++.+++.++.++... +...++.+....+.+
T Consensus 218 -~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~------------------------~~~G~~~~~~~a~~~ 272 (415)
T 2fq6_A 218 -DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA------------------------YLMGQMVDADTAYIT 272 (415)
T ss_dssp -GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH------------------------HHTTCCCCHHHHHHH
T ss_pred -ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH------------------------HhcCCCCCHHHHHHH
Confidence 45899999999999994433 699998887655442211 111223333333333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecC-CCCc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHK-DGTY 407 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~-~~~~ 407 (815)
..+++.+. ..+++..+.+..+.+.|.+. |.+. ++.|.....+ ...+++++|.+++. +...
T Consensus 273 ~~~l~~l~---~r~~~~~~n~~~l~~~L~~~------~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~ 343 (415)
T 2fq6_A 273 SRGLRTLG---VRLRQHHESSLKVAEWLAEH------PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE 343 (415)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHH
T ss_pred HhhhhHHH---HHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHH
Confidence 34444332 23356677777888888776 4443 2222210001 13588999999752 1111
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhh-----hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSC-----QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
...+...|...+|.++.|..|+.... ..+... . . .-|...+.||+|+|.+++++
T Consensus 344 --~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~-~--------------~----~~g~~~~~iRlS~G~e~~~d 402 (415)
T 2fq6_A 344 --LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP-Q--------------G----EIDFSGTLIRLHIGLEDVDD 402 (415)
T ss_dssp --HHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCT-T--------------C----CCCCCSCEEEEECCSSCHHH
T ss_pred --HHHHHHhCCcCeEeccCCCCceeEEecCCCccccccc-h--------------h----hcCCCCCEEEEEecCCCHHH
Confidence 12345555667788899988874321 111000 0 0 01333589999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQ 493 (815)
Q Consensus 483 di~~lv~~L~~ 493 (815)
+|+++.++|++
T Consensus 403 ~i~~l~~al~~ 413 (415)
T 2fq6_A 403 LIADLDAGFAR 413 (415)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=236.29 Aligned_cols=309 Identities=14% Similarity=0.086 Sum_probs=210.1
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~ 180 (815)
..++++++++++++|++ + .+++++|+ +|+.+++.++. ++|| ||++...|++++.+.. .+...| ...++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~-~--~v~~~sG~-~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 187 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAE-S--TLLMASGM-CASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA- 187 (445)
T ss_dssp HHHHHHHHHHHHHHTCS-E--EEEESCHH-HHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS-
T ss_pred hHHHHHHHHHHHHhCCC-c--EEEeCCHH-HHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-
Confidence 34889999999999985 3 36666665 99999999987 8999 8888888988776544 355556 3344432
Q ss_pred hhcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD 259 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d 259 (815)
+++.++++|+ ++| ++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....
T Consensus 188 --d~~~l~~ai~-------~~tv~lV~le~p~NptG~v~dl~~I~~la~-----------~~g~~livD~a~~~~~~~~~ 247 (445)
T 1qgn_A 188 --DVGALELALN-------QKKVNLFFTESPTNPFLRCVDIELVSKLCH-----------EKGALVCIDGTFATPLNQKA 247 (445)
T ss_dssp --CHHHHHHHHH-------HSCEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCT
T ss_pred --CHHHHHHHhc-------cCCCCEEEEeCCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCc
Confidence 4555555442 568 99999999999999999999999999 89999999999987764322
Q ss_pred CCCCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAII 336 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~ 336 (815)
..+++|+++.|+||++| +.| +|+++.++++++.+.... +...++++....+
T Consensus 248 -~~~g~Div~~S~sK~~g-g~gd~~~G~l~~~~~l~~~l~~~~------------------------~~~g~~~~~~~a~ 301 (445)
T 1qgn_A 248 -LALGADLVLHSATKFLG-GHNDVLAGCISGPLKLVSEIRNLH------------------------HILGGALNPNAAY 301 (445)
T ss_dssp -TTTTCSEEEECTTTTTT-CSSSCCCEEEEECHHHHHHHHHHH------------------------HHHCCCCCHHHHH
T ss_pred -cccCCEEEEECCccccc-ccccceEEEEEECHHHHHHHHHHH------------------------HHhCCCCCHHHHH
Confidence 35689999999999999 656 899999887765543211 1112334444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCC---------CcccceEEEEEecCCCC
Q psy16512 337 SLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGES---------KYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 337 al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~---------~~~~~i~~f~~~~~~~~ 406 (815)
.+..+++.+. ..+++..+.++++.+.|+++ |++ +++.|...+.+ ...+++++|.+++.. .
T Consensus 302 ~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~-~ 371 (445)
T 1qgn_A 302 LIIRGMKTLH---LRVQQQNSTALRMAEILEAH------PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL-L 371 (445)
T ss_dssp HHHHHGGGHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH-H
T ss_pred HHHHhHHHHH---HHHHHHHHHHHHHHHHHhcC------CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH-H
Confidence 4444444432 23355566688888889887 677 55554210001 135899999997521 1
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCch---hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPG---SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~---~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+...|...+|.++.|..|+.. ....+..++.+. +..+ |...+.||+|+|. ||
T Consensus 372 ~--~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~-~~~~--------------g~~~~~iRlSvG~----Ed 430 (445)
T 1qgn_A 372 T--TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSD-RAKY--------------GIMDNLVRFSFGV----ED 430 (445)
T ss_dssp H--HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHH-HHTT--------------TCCSSEEEEECCS----SC
T ss_pred H--HHHHHHhCCCceEeccCCCCceeeecccccccccCCHHH-HHhc--------------CCCCCeEEEEecc----CC
Confidence 0 123555666678999999888642 222222333322 2221 3445899999993 67
Q ss_pred HHHHHHHHHHHHh
Q psy16512 484 VKYFLSFLNQYFL 496 (815)
Q Consensus 484 i~~lv~~L~~~~~ 496 (815)
++++++.|++.+.
T Consensus 431 id~li~~L~~al~ 443 (445)
T 1qgn_A 431 FDDLKADILQALD 443 (445)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=233.42 Aligned_cols=314 Identities=11% Similarity=0.061 Sum_probs=208.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.++.+.+++.+.+.......+. ... ..++|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 45 ~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~g~~~al~~~~~~l~- 112 (385)
T 1b5p_A 45 TPEHVKEAARRALAQGKTKYAP-----PAG----IPELREALAEKFRRENGLSVTPEE--TIVTVGGSQALFNLFQAIL- 112 (385)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHTTCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCChHH--EEEcCChHHHHHHHHHHhc-
Confidence 3466677666655432111111 122 566777777776 4 34555 9999999999999999997
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP--- 219 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~--- 219 (815)
++|| |+++.+.|+.+....+..+... .+++++++ .++++.+++++ .+++++|++++++||||.++|
T Consensus 113 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~NPtG~~~~~~~ 185 (385)
T 1b5p_A 113 DPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI-------TPRTKALVVNSPNNPTGAVYPKEV 185 (385)
T ss_dssp CTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC-------CTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhc-------CCCCEEEEEeCCCCCCCCCcCHHH
Confidence 8999 9999988877665544433222 56666422 45666666533 457899999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCCC--CCcEEEEccccccccCCc--ceEEEEecccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQKSA 292 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~ 292 (815)
+++|.++|+ ++|+++|+|++++.... ..++..+ +.++++.|+||+|| ++| +|+++++++++
T Consensus 186 l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~ 253 (385)
T 1b5p_A 186 LEALARLAV-----------EHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVI 253 (385)
T ss_dssp HHHHHHHHH-----------HTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcC-CcccceEEEEeCHHHH
Confidence 555666666 89999999999765321 1222222 56789999999999 558 89999988776
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT----MEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~----l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+.+.+.. .....+.+.....++.++++. ...+....+++++.++++.+.|++
T Consensus 254 ~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 309 (385)
T 1b5p_A 254 KAMASVS------------------------RQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA 309 (385)
T ss_dssp HHHHHHH------------------------HTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------------hhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5553221 011124455666666566643 112212227778888889999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +++++.+.. +.++.+.++.. + .+..++.+.|.++||.+++|..|..
T Consensus 310 ~-------g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~l~~~l~~~gv~v~~g~~f~~---------------- 356 (385)
T 1b5p_A 310 L-------GLKAVRPSG-------AFYVLMDTSPI-A--PDEVRAAERLLEAGVAVVPGTDFAA---------------- 356 (385)
T ss_dssp H-------TCCBCCCSB-------TTEEEEECTTT-C--SSHHHHHHHHHHTTEECEESGGGTC----------------
T ss_pred C-------CCeecCCCe-------eEEEEEecCCC-C--CCHHHHHHHHHHCCeEEecccccCC----------------
Confidence 6 455554432 44555555421 1 2344677777899999998865421
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|||++ +++++++++++.|.+++
T Consensus 357 -------------------~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 357 -------------------FGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp -------------------TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred -------------------CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 278999998 68999999999887754
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=236.13 Aligned_cols=328 Identities=12% Similarity=0.027 Sum_probs=216.8
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cC--CCCC-ceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FN--TDSD-HYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g--~~~~-~~~iv~t~g~ 133 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++++.++++ +| ++++ + |++|+|+
T Consensus 32 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~l~~~~g~~~~~~~~--v~~~~g~ 100 (386)
T 1u08_A 32 AINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP-----MTG----VQALREAIAQKTERLYGYQPDADSD--ITVTAGA 100 (386)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHSCCCCTTTT--EEEESSH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCCCCCC--EEEcCCh
Confidence 4555555433 34577777777666431111111 112 45666777766 46 4455 6 9999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++|+.+++.++. ++|| |++....|+++....+..+... .++.+.+ ...+++.+++++ .+++++|+++++
T Consensus 101 ~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~~p 172 (386)
T 1u08_A 101 TEALYAAITALV-RNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL-------SERTRLVILNTP 172 (386)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHC-------CTTEEEEEEESS
T ss_pred HHHHHHHHHHhC-CCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhh-------cccCEEEEEeCC
Confidence 999999999997 8898 8899988987765444332222 5566542 345666666533 467899999999
Q ss_pred cCCCccccChH---HHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCC----CCCCcEEEEccccccccC
Q psy16512 211 SNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLK----QHQPDFISISFYKMFGYP 279 (815)
Q Consensus 211 ~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~----~~~~D~vv~S~~K~~g~p 279 (815)
+||||.++|.+ +|.++|+ ++|+++|+|++++. |....++. ..+.|+++.|+||+|| +
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~ 240 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIA-----------GHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYH-M 240 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHT-----------TSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTT-C
T ss_pred CCCCCccCCHHHHHHHHHHHH-----------HcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcC-C
Confidence 99999999864 4555666 89999999999875 22222222 2367999999999999 6
Q ss_pred Cc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHH
Q psy16512 280 TG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAF 356 (815)
Q Consensus 280 ~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~ 356 (815)
+| +|++++++++++.+.+.. ....++.+.+...++.++++........+ ++..
T Consensus 241 ~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 296 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAEIRKVH------------------------QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYR 296 (386)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHH
T ss_pred cccceEEEEcCHHHHHHHHHHH------------------------HhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 68 899999888766553221 11123456666666666766432111222 7788
Q ss_pred HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhh
Q psy16512 357 ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 357 ~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~ 435 (815)
++++++.+.|+++ +++++.+.. +.++++.++... ..+..++.+.| .++||.+++|..|....
T Consensus 297 ~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~--~~~~~~~~~~l~~~~gi~v~~g~~f~~~~- 359 (386)
T 1u08_A 297 QKRDILVNALNES-------RLEILPCEG-------TYFLLVDYSAVS--TLDDVEFCQWLTQEHGVAAIPLSVFCADP- 359 (386)
T ss_dssp HHHHHHHHHTTSS-------SCEECCCCB-------SSEEEEECTTTC--CSCHHHHHHHHHHHSCEECEEGGGGCSSC-
T ss_pred HHHHHHHHHHHHC-------CCeecCCCc-------eEEEEEecCCCC--CCCHHHHHHHHHHhCCEEEeCchHhCCCC-
Confidence 8888898888776 567765432 567888775421 02234566655 57899999875432110
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
...+++|+|++ ++++++++++++|++
T Consensus 360 ------------------------------~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 360 ------------------------------FPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ------------------------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ------------------------------CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 11378999998 489999999998864
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=233.17 Aligned_cols=331 Identities=13% Similarity=0.057 Sum_probs=224.3
Q ss_pred hhhhhhhcc-----cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-----CCCCceeEEecC
Q psy16512 62 ICYLDYTGA-----GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-----TDSDHYSVIFTS 131 (815)
Q Consensus 62 ~iyLd~a~~-----~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-----~~~~~~~iv~t~ 131 (815)
.++|..... .++++.+.+++.+.+..... ..+..... ..++|+.++++++ +++++ |++|+
T Consensus 56 ~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~----~~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~--v~~t~ 125 (427)
T 3dyd_A 56 MISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY----NGYAPSIG----FLSSREEIASYYHCPEAPLEAKD--VILTS 125 (427)
T ss_dssp CEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCS----SSCCCTTC----CHHHHHHHHHHHCBTTBCCCGGG--EEEES
T ss_pred EEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcC----CCCCCCCC----cHHHHHHHHHHHhhcCCCCChHH--EEEec
Confidence 466665543 25677888888776654211 01111223 7789999999998 66776 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+|+|+.+++.++. ++|| |++..+.|+.+.......+... .++.+++ ..++++.+++++ .+++++|++
T Consensus 126 g~t~al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i 197 (427)
T 3dyd_A 126 GCSQAIDLCLAVLA-NPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLI-------DEKTACLIV 197 (427)
T ss_dssp SHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSC-------CTTEEEEEE
T ss_pred CcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHh-------ccCCCEEEE
Confidence 99999999999998 8898 8888877776554444333222 4555432 245666666533 457899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCCCCc---EEEEccccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQHQPD---FISISFYKMFG 277 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~~~D---~vv~S~~K~~g 277 (815)
++++||||..+| +++|.++|+ ++|+++|+|+++.. +....++..++.+ +++.|+||.|+
T Consensus 198 ~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~ 266 (427)
T 3dyd_A 198 NNPSNPCGSVFSKRHLQKILAVAA-----------RQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWL 266 (427)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHH-----------HCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCC
Confidence 999999999999 777777777 89999999999875 2222233333333 66789999988
Q ss_pred cCCc--ceEEEEecc-------cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--H
Q psy16512 278 YPTG--LGALIVKQK-------SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--E 346 (815)
Q Consensus 278 ~p~G--~G~l~~~~~-------~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~ 346 (815)
++| +|++++++. +.+.+... .....+++.++..++.++++.. .
T Consensus 267 -~~G~riG~~~~~~~~~~~~~~i~~~l~~~-------------------------~~~~~~~~~~~~~a~~~~L~~~~~~ 320 (427)
T 3dyd_A 267 -VPGWRLGWILIHDRRDIFGNEIRDGLVKL-------------------------SQRILGPCTIVQGALKSILCRTPGE 320 (427)
T ss_dssp -CGGGCCEEEEEECSTTSSHHHHHHHHHHH-------------------------HHHHCCSCHHHHHHHHHHHHHSCHH
T ss_pred -CcCcceEEEEecCcchhhHHHHHHHHHHH-------------------------HhccCCCCHHHHHHHHHHHHhcCHH
Confidence 457 799999853 22222110 0012467777787777777642 1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCccCHHHHHHhh-hcCCcEe
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQNLA-NLKKIQL 424 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~~~l-~~~gI~v 424 (815)
......++..++++++.+.|+++ |+++++.+.. +.++.+.+.... ....+..++.+.| .++||.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~p~~-------g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v 387 (427)
T 3dyd_A 321 FYHNTLSFLKSNADLCYGALAAI------PGLRPVRPSG-------AMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHC 387 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCSB-------TTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCceecCCCe-------eEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEE
Confidence 12112278888999999999988 7888876543 667777775210 0012233455555 6899999
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+|..|.. .+++|++++ ++++++++++++|.+++.+
T Consensus 388 ~~g~~~~~-----------------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 388 LPATCFEY-----------------------------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp EEGGGGTC-----------------------------------TTEEEEESC--SCHHHHHHHHHHHHHHHHH
T ss_pred ECCcccCC-----------------------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHH
Confidence 98865431 378999987 6899999999999998754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=240.39 Aligned_cols=296 Identities=11% Similarity=0.031 Sum_probs=220.9
Q ss_pred HHHHHHHHHhHcCCCC--CceeE--EecCCchhhHHHHHhhhccCCC--------c-EEEecCCCcchhhHHHHhhccc-
Q psy16512 107 IDQMRTKILQYFNTDS--DHYSV--IFTSGATSAIKTVSEYFEFNEG--------S-FIYLTDNHTSVLGMRELVKTNQ- 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~--~~~~i--v~t~g~t~al~~~~~al~~~~g--------d-vv~~~~~h~s~~~~~~~~~~~g- 172 (815)
.+++++++++++|++. ++ + ++|+|+|+|+.+++.++. .+| | |+++...|+++.......+...
T Consensus 141 e~~l~~~la~~~g~~~~~~~--v~~~~t~ggt~a~~~al~a~~-~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~ 217 (514)
T 3mad_A 141 EAEVVAMTAHMLGGDAAGGT--VCGTVTSGGTESLLLAMKTYR-DWARATKGITAPEAVVPVSAHAAFDKAAQYFGIKLV 217 (514)
T ss_dssp HHHHHHHHHHHTTGGGGTSC--CEEEEESSHHHHHHHHHHHHH-HHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHcCCCCccCC--cceEEcCcHHHHHHHHHHHHH-HHhhhhcCCCCCeEEEeCccchHHHHHHHHcCCeeE
Confidence 5678899999999874 44 6 999999999999999987 554 6 8899999988766655543332
Q ss_pred eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.++++.++.++++.++++| ++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++
T Consensus 218 ~v~~~~~~~~d~~~Le~~i-------~~~~~~v~~~~~~nptG~~~~l~~i~~la~-----------~~~i~livDea~~ 279 (514)
T 3mad_A 218 RTPLDADYRADVAAMREAI-------TPNTVVVAGSAPGYPHGVVDPIPEIAALAA-----------EHGIGCHVDACLG 279 (514)
T ss_dssp EECBCTTSCBCHHHHHHHC-------CTTEEEEEEETTCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTT
T ss_pred EeeeCCCCCCCHHHHHHHh-------ccCCEEEEEeCCCCCCccccCHHHHHHHHH-----------HhCCeEEEecccc
Confidence 5666666667888777644 467999999999999999999999999999 8999999999977
Q ss_pred cCC-----------CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc----cccCceEEEEecCCccccc
Q psy16512 253 CGS-----------NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT----FYGGGTVKISMANENFHIK 317 (815)
Q Consensus 253 ~g~-----------~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~----~~g~~~~~~~~~~~~~~~~ 317 (815)
.+. .+++....++|++++|+||++++|.|+|+++++++........ +.++..
T Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------- 346 (514)
T 3mad_A 280 GFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLY------------- 346 (514)
T ss_dssp TTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSE-------------
T ss_pred cccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcc-------------
Confidence 432 2455566789999999999966688999999998765432211 111111
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccce
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNI 395 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i 395 (815)
......|+.+...++++.+++..+...+.. .++..++++++.+.|+++ ++++++.+. .++
T Consensus 347 ----~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~--------~~~ 408 (514)
T 3mad_A 347 ----FSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI------PSLKILGDP--------LWV 408 (514)
T ss_dssp ----EESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------TTCEESSCC--------SSE
T ss_pred ----cCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC------CCeEEeCCC--------eEE
Confidence 011235677777788888888877654322 288899999999999988 788888654 347
Q ss_pred EEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 396 VNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 396 ~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
+.|...+ .+..++.+.|.++||.+ .|..+ .+.+|+++
T Consensus 409 ~~~~~~~-----~~~~~l~~~L~~~Gi~v-~g~~~-------------------------------------~~~~Ri~~ 445 (514)
T 3mad_A 409 IAVASDE-----LNIYQVMEEMAGRGWRL-NGLHR-------------------------------------PPAFHVAL 445 (514)
T ss_dssp EEEECSS-----SCHHHHHHHHHTTTCBC-EEETT-------------------------------------TTEEEEEC
T ss_pred EEEeCCC-----CCHHHHHHHHHhcCCEe-ccCCC-------------------------------------CCeEEEEE
Confidence 7776533 23346888898899987 33211 25799999
Q ss_pred cC-CCCHHHHHHHHHHHHHHHhh
Q psy16512 476 GH-ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 476 g~-~~t~edi~~lv~~L~~~~~~ 497 (815)
+. .++++++++++++|++++.+
T Consensus 446 ~~~~~~~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 446 TLRHTEPGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp CGGGGSTTHHHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHHHH
Confidence 84 45679999999999988753
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=237.58 Aligned_cols=305 Identities=12% Similarity=0.059 Sum_probs=209.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcC-chhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFS-VDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~-~~~~ 181 (815)
+.++++++++++|+++++ +++++|+|.+++.+..++..++|| ||++..+|+++.. +...++..| .+.++ .++.
T Consensus 110 ~~~~~~~la~~~g~~~~~--i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~ 187 (438)
T 1wyu_A 110 TFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR 187 (438)
T ss_dssp HHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred HHHHHHHHHHHhCCCccc--eEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence 889999999999998766 899999996655555554447888 9999999999875 444455556 33333 3333
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc-cccCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA-TYCGSNMLDL 260 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a-~~~g~~~~dl 260 (815)
+++++ | +++|++|+++++ |+||.+.|+++|.++|+ ++|+++++|+. ++.|....+
T Consensus 188 ~d~~~----i-------~~~t~~v~i~~p-n~tG~~~~l~~i~~la~-----------~~g~~vivd~d~~a~g~~~~~- 243 (438)
T 1wyu_A 188 TPLPE----V-------GEEVGAVVVQNP-NFLGALEDLGPFAEAAH-----------GAGALFVAVADPLSLGVLKPP- 243 (438)
T ss_dssp CCCCC----C-------CTTEEEEEEESS-CTTSBCCCHHHHHHHHH-----------HTTCEEEEECCTTGGGTBCCH-
T ss_pred cCHHH----h-------CCCeEEEEEECC-CCCeEEecHHHHHHHHH-----------HcCCEEEEEechhhccCcCCC-
Confidence 44433 2 367999999998 99999999999999999 89999998855 555654333
Q ss_pred CCCCCcEEEEcccc-----ccccCCcceEEEEecccccccCcccccCceEEEEecC-Ccccccc--cCccccccCCCCCh
Q psy16512 261 KQHQPDFISISFYK-----MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMAN-ENFHIKK--DGLFEKFEDGTVNY 332 (815)
Q Consensus 261 ~~~~~D~vv~S~~K-----~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~-~~~~~~~--~~~~~~~~~gt~~~ 332 (815)
..+++|++++|.|| ++++| |+|++++++++.+.+.....|+ ... ... ..+.... .....+++.++.|+
T Consensus 244 ~~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~-~~~--~~~~~~~~~~l~~~~~~~r~~~~t~~~ 319 (438)
T 1wyu_A 244 GAYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSE-TVD--VEGRRGFILTLQAREQYIRRAKAKSNI 319 (438)
T ss_dssp HHHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEE-EEB--TTSCEEEEECCGGGSHHHHGGGSSCCC
T ss_pred ccCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceecc-ccc--cCCCcceeeeccccccccchhcccCCc
Confidence 34578999999777 56668 8999999998877664433222 110 000 0011000 11122455677776
Q ss_pred ---hHHHHHHHH--HHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 333 ---LAIISLKYG--FDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 333 ---~~~~al~~a--l~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
..+.++.++ +..+...+. .+ ++..++++++.+.|+++ ++++++.+.. .-.++.+.+.
T Consensus 320 ~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~------~~~~~~~~~~---- 383 (438)
T 1wyu_A 320 TTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV------PGVRPFTPKP------FFNEFALALP---- 383 (438)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTCEECSCSS------BCSEEEEECS----
T ss_pred cchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEECCCCC------eEEEEEEeCC----
Confidence 445555444 555544322 22 88899999999999988 7888876421 1233444432
Q ss_pred CccCHHHHHHhhhcCCcEe--ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 406 TYYGYSEVQNLANLKKIQL--RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 406 ~~~~~~~v~~~l~~~gI~v--~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
.+..++.+.|.++||.+ +.+.+|. .+++|||++.++|++|
T Consensus 384 --~~~~~~~~~L~~~gi~v~~~~~~~~~------------------------------------~~~lRis~~~~~t~ed 425 (438)
T 1wyu_A 384 --KDPEAVRRALAERGFHGATPVPREYG------------------------------------ENLALFAATELHEEED 425 (438)
T ss_dssp --SCHHHHHHHHHHTTCCCCEECCTTSC------------------------------------SSEEEEECCTTCCHHH
T ss_pred --CCHHHHHHHHHHCCceeccccccccC------------------------------------CCeEEEEecccCCHHH
Confidence 23346888888889998 5454321 3789999999999999
Q ss_pred HHHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQYF 495 (815)
Q Consensus 484 i~~lv~~L~~~~ 495 (815)
+++++++|++++
T Consensus 426 i~~~~~~l~~~l 437 (438)
T 1wyu_A 426 LLALREALKEVL 437 (438)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=232.76 Aligned_cols=328 Identities=10% Similarity=0.076 Sum_probs=214.3
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchh
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~ 135 (815)
+.|..+... ..++.+.+++.+.+.......+ .... ..++|+.++++++ +++++ |++|+|+++
T Consensus 34 i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~lr~~ia~~~~~~~g~~~~~~~--v~~t~g~~~ 102 (391)
T 3h14_A 34 IHMEVGQPGTGAPRGAVEALAKSLETDALGYT-----VALG----LPALRQRIARLYGEWYGVDLDPGR--VVITPGSSG 102 (391)
T ss_dssp EECCCSSCSSCSCHHHHHHHHHHHC---------------C----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----hHHHHHHHHHHHHHHhCCCCCHHH--EEEecChHH
Confidence 444443333 2356677777766543211111 1122 5667777777764 56666 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
|+.+++.++. ++|| |++....|+++....+..+... .++++.++ .++++.+++ . ++++|++++++
T Consensus 103 al~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-------~---~~~~v~i~~p~ 171 (391)
T 3h14_A 103 GFLLAFTALF-DSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAG-------L---DLAGLMVASPA 171 (391)
T ss_dssp HHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTT-------S---CCSEEEEESSC
T ss_pred HHHHHHHHhc-CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHh-------c---CCeEEEECCCC
Confidence 9999999997 8999 8888888877655444433222 66776554 346655553 1 68999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC-CCCcEEEEccccccccCCc--c
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ-HQPDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~-~~~D~vv~S~~K~~g~p~G--~ 282 (815)
||||.++| +++|.++|+ ++|+++|+|++++... .+..... .+.++++.|++|++| ++| +
T Consensus 172 nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~ 239 (391)
T 3h14_A 172 NPTGTMLDHAAMGALIEAAQ-----------AQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFS-MTGWRV 239 (391)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTC-CTTSCC
T ss_pred CCCCccCCHHHHHHHHHHHH-----------HcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccC-Ccccee
Confidence 99999999 455566666 8999999999987432 1222222 245688899999998 556 7
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYT 362 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l 362 (815)
|++++++++++.+.... ....++.+..+..++.++++....+....++..++++++
T Consensus 240 G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 295 (391)
T 3h14_A 240 GWMVVPEDQVRVVERIA------------------------QNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLM 295 (391)
T ss_dssp EEEECCGGGHHHHHHHH------------------------HHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHH------------------------hhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 99999888766553221 122346677777777666652222222237888889999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.+.|+++ +...+..+. .+.++.+.++... .+..++.+.| +++||.+++|..|..+.
T Consensus 296 ~~~l~~~------~~~~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~~~~~~------- 352 (391)
T 3h14_A 296 LERLPKA------GFTRIAPPD-------GAFYVYADVSDLT---DDSRAFAAEILEKAGVAVTPGLDFDPER------- 352 (391)
T ss_dssp HHHHHHH------TCCCBCCCC-------BTTEEEEECTTTC---SCHHHHHHHHHHHHCEECEEGGGTCTTT-------
T ss_pred HHHHHHc------CCCcccCCC-------eeEEEEEecCccC---CCHHHHHHHHHHHCCEEEcCchhhCCCC-------
Confidence 9999887 222222332 1455666665311 2233566665 45699999988765411
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
..+++|+|++. +++++++++++|.+++...
T Consensus 353 -------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~~ 382 (391)
T 3h14_A 353 -------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQAR 382 (391)
T ss_dssp -------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHHC
T ss_pred -------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 13799999996 7899999999999987543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=224.00 Aligned_cols=314 Identities=12% Similarity=0.075 Sum_probs=220.1
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhH------cCCCCCceeEEecCC
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQY------FNTDSDHYSVIFTSG 132 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~------~g~~~~~~~iv~t~g 132 (815)
++|+.+... ..++.+.+++.+.+... ....+. .. ..++++.++++ +++++++ |++|+|
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~------~~----~~~l~~~la~~l~~~~g~~~~~~~--v~~~~G 100 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNRYPE------RD----AVELRDELAAYITKQTGVAVTRDN--LWAANG 100 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCC------TT----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCC------cc----HHHHHHHHHHhhhhcccCCCChHh--EEECCC
Confidence 445544433 35677788777766432 111111 11 34677788877 5666666 999999
Q ss_pred chhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCC-CccEEEEec
Q psy16512 133 ATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRH-SNSLFVYPA 209 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~-~t~lv~i~~ 209 (815)
+++++.+++.++. ++|| |++....|+++.......+... .++.+.+...+++.++++++ + ++++|++++
T Consensus 101 ~~~al~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-------~~~~~~v~~~~ 172 (369)
T 3cq5_A 101 SNEILQQLLQAFG-GPGRTALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIR-------AKQPDIVFVTT 172 (369)
T ss_dssp HHHHHHHHHHHHC-STTCEEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHH-------HHCCSEEEEES
T ss_pred hHHHHHHHHHHhc-CCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhh-------ccCCCEEEEeC
Confidence 9999999999997 8898 8888988887765444433222 55655444567777766443 3 689999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CCC-CCCC-CcEEEEccccccccCCc--c
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LDL-KQHQ-PDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~dl-~~~~-~D~vv~S~~K~~g~p~G--~ 282 (815)
++||||.++|++++.++++ .+++++|+|++++.+... ..+ ...+ .++++.|+||+|| ++| +
T Consensus 173 ~~nptG~~~~~~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~ 240 (369)
T 3cq5_A 173 PNNPTGDVTSLDDVERIIN-----------VAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFD-FAGGRL 240 (369)
T ss_dssp SCTTTCCCCCHHHHHHHHH-----------HCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTS-CGGGCC
T ss_pred CCCCCCCCCCHHHHHHHHH-----------hCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcC-Ccccce
Confidence 9999999999999999999 667999999998866532 221 2234 6689999999998 447 6
Q ss_pred eEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy16512 283 GALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYT 362 (815)
Q Consensus 283 G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l 362 (815)
|++++++++++.+.... ...+.+.....++.++++.........++..++++++
T Consensus 241 G~~~~~~~~~~~l~~~~--------------------------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l 294 (369)
T 3cq5_A 241 GYFVANPAFIDAVMLVR--------------------------LPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRV 294 (369)
T ss_dssp EEEEECTHHHHHHHTTS--------------------------CTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHcC--------------------------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99999988765543211 1124666777777777765322222237888899999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
.+.|++. +++++.+ .++++++.++ . +..++.+.|.++||.+++|. .
T Consensus 295 ~~~L~~~-------g~~~~~~--------~~~~~~~~~~-~-----~~~~l~~~l~~~gi~v~~~~------~------- 340 (369)
T 3cq5_A 295 AARLEEL-------GYAVVPS--------ESNFVFFGDF-S-----DQHAAWQAFLDRGVLIRDVG------I------- 340 (369)
T ss_dssp HHHHHHH-------TCEEECC--------SSSEEEEECC-S-----SHHHHHHHHHHTTEECBCCS------C-------
T ss_pred HHHHHhC-------CCEECCC--------CCeEEEEECC-C-----CHHHHHHHHHHCCEEEEECC------C-------
Confidence 9999875 5666532 2577777764 1 23457788889999998751 0
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++|+++++++|++++.
T Consensus 341 -------------------------~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 341 -------------------------AGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -------------------------TTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 268999998 78999999999998763
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-24 Score=235.97 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=215.6
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCCceeEEecCCch
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~~~~iv~t~g~t 134 (815)
.++|+.+... ..++.+.+++.+.+.......+ .... ..++|+.+++++ |+ ++++ |++|+|++
T Consensus 43 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~lr~~la~~~~~~~g~~~~~~~--v~~~~g~t 111 (389)
T 1o4s_A 43 VINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYT-----DPRG----IYELREGIAKRIGERYKKDISPDQ--VVVTNGAK 111 (389)
T ss_dssp CEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCC-----CTTC----CHHHHHHHHHHHHHHHTCCCCGGG--EEEESHHH
T ss_pred EEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----CHHHHHHHHHHHHHHhCCCCCHHH--EEEecCHH
Confidence 3455554433 3456777777666643211111 1122 567788888877 65 5555 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+++++ .+++++|+++++
T Consensus 112 ~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p 183 (389)
T 1o4s_A 112 QALFNAFMALL-DPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL-------VGKTKAVLINSP 183 (389)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC-------CTTEEEEEEESS
T ss_pred HHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc-------ccCceEEEEcCC
Confidence 99999999996 8898 8899989988766554433222 5666543 234666666533 457899999999
Q ss_pred cCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC----CCCcEEEEccccccccCC
Q psy16512 211 SNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 211 ~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~----~~~D~vv~S~~K~~g~p~ 280 (815)
+||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+|| ++
T Consensus 184 ~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 251 (389)
T 1o4s_A 184 NNPTGVVYRREFLEGLVRLAK-----------KRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MT 251 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CG
T ss_pred CCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcC-Cc
Confidence 999999999 666777777 89999999999876542 122211 367999999999998 66
Q ss_pred c--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy16512 281 G--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358 (815)
Q Consensus 281 G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l 358 (815)
| +|++++++++++.+.+.... ...+.+.....++.++++.. .....++..++
T Consensus 252 G~r~G~l~~~~~~~~~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~ 305 (389)
T 1o4s_A 252 GWRVGYLISSEKVATAVSKIQSH------------------------TTSCINTVAQYAALKALEVD--NSYMVQTFKER 305 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHH------------------------HTCSCCHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHHHHhhh------------------------cccCCCHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 7 89999988876655332111 11233445555444444321 11122788889
Q ss_pred HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhh
Q psy16512 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQR 437 (815)
Q Consensus 359 ~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~ 437 (815)
++++.+.|+++ +++++.+. .+.++++.++ . +..++.+.|. ++||.+++|..|..
T Consensus 306 ~~~l~~~L~~~-------g~~~~~~~-------~~~~~~~~~~-~-----~~~~l~~~l~~~~gi~v~~g~~f~~----- 360 (389)
T 1o4s_A 306 KNFVVERLKKM-------GVKFVEPE-------GAFYLFFKVR-G-----DDVKFCERLLEEKKVALVPGSAFLK----- 360 (389)
T ss_dssp HHHHHHHHHHT-------TCCCCCCS-------BSSEEEEECS-S-----CHHHHHHHHHHHHCEECEEGGGGTC-----
T ss_pred HHHHHHHHHhc-------CCeeecCC-------cceEEEEeCC-C-----CHHHHHHHHHHHCCEEEeCchhcCC-----
Confidence 99999999886 45554332 2455666664 1 2345777775 89999988754321
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++. ++++++++++.|.+++.
T Consensus 361 ------------------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 361 ------------------------------PGFVRLSFAT--SIERLTEALDRIEDFLN 387 (389)
T ss_dssp ------------------------------TTEEEEECCS--CHHHHHHHHHHHHHHHT
T ss_pred ------------------------------CCeEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 2689999983 89999999999998764
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=234.98 Aligned_cols=321 Identities=12% Similarity=0.073 Sum_probs=221.6
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC--CCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
..++.+.+++.+.+....+..+.. ..+. .+++.+++++.+| +++++ |+||+|+++|+.+++.++. ++|
T Consensus 74 ~~~~~v~~a~~~~~~~~~~~y~~~---~~~l----~~~l~~~l~~~~g~~~~~~~--v~~~~g~~ea~~~a~~~~~-~~g 143 (421)
T 3l8a_A 74 LPVPEIKEAIINYGREHIFGYNYF---NDDL----YQAVIDWERKEHDYAVVKED--ILFIDGVVPAISIALQAFS-EKG 143 (421)
T ss_dssp CCCHHHHHHHHHHHHHCCSSCBCC---CHHH----HHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS-CTE
T ss_pred CCCHHHHHHHHHHHhcCCcCCCCC---CHHH----HHHHHHHHHHHhCCCCCHHH--EEEcCCHHHHHHHHHHHhc-CCC
Confidence 346788888877765433322221 1334 6778888888888 55665 9999999999999999997 899
Q ss_pred c-EEEecCCCcchhhHHHHhhccc-eEEcC-chh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh---H
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ-IYSFS-VDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL---S 221 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~-~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l---~ 221 (815)
| |++....|+++.......+... .++++ .++ .++++.++++++ .+++++|++++++||||.++|. +
T Consensus 144 d~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~------~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 144 DAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDII------DNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp EEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHH------HTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhh------ccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 8 8888888877665554443332 55654 222 357777766443 2579999999999999999664 4
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCC-----CCCcEEEEccccccccCCc--ceEEEEe-c
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVK-Q 289 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~-~ 289 (815)
+|.++|+ ++|+++|+|++|+.. .....+.. .+.++++.|++|+|| ++| +|+++++ +
T Consensus 218 ~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~~~G~~~~~~~ 285 (421)
T 3l8a_A 218 KIAELCK-----------KHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFN-IAGTKNSFAIIQNE 285 (421)
T ss_dssp HHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHT-CGGGCCEEEECCSH
T ss_pred HHHHHHH-----------HcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhcc-CchhheEeEEcCCH
Confidence 5566666 899999999998642 22222222 234588999999998 446 6999988 5
Q ss_pred ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh
Q psy16512 290 KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 290 ~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~ 368 (815)
++.+.+.+.. .....++.|..++.++.++++......... ++..++++++.+.|++
T Consensus 286 ~l~~~~~~~~-----------------------~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~ 342 (421)
T 3l8a_A 286 SLRRKFQYRQ-----------------------LANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA 342 (421)
T ss_dssp HHHHHHHHHH-----------------------HHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----------------------HhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655442211 112334678888888888877533322223 7888899999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEec--CCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH--KDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~--~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+ |+++++.+.. +.++++.++. .+.. ++.+.| +++||.+++|..|...
T Consensus 343 ~------~~i~~~~~~~-------~~~~~v~~~~~~~~~~-----~l~~~l~~~~gi~v~~g~~f~~~------------ 392 (421)
T 3l8a_A 343 K------TKIKVMEPEG-------TYLVWLDFSAYAIAQP-----QLSEKLQNEAKVVLNDGAHFGKE------------ 392 (421)
T ss_dssp H------CSCEEECCSB-------SSEEEEECGGGTCCTT-----HHHHHHHHTTCEECEEGGGGCGG------------
T ss_pred C------CCceEeCCCe-------eEEEEEeccccCCCHH-----HHHHHHHHhCCEEEECchhhCCC------------
Confidence 7 6788876542 3444477664 2333 366666 5779999988765421
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|++++ +++++++++++.|++++.
T Consensus 393 ---------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 393 ---------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ---------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ---------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 1379999998 589999999999998763
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-24 Score=238.19 Aligned_cols=342 Identities=11% Similarity=-0.011 Sum_probs=220.1
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCC-ceeEEecCCc
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSD-HYSVIFTSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~-~~~iv~t~g~ 133 (815)
.++|+.+... ..++.+.+++.+.+.......+. ... ..++++.+++++ |. +++ + |++|+|+
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~~--v~~t~g~ 95 (411)
T 2o0r_A 27 AVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPP-----GPG----SAPLRRAIAAQRRRHFGVDYDPETE--VLVTVGA 95 (411)
T ss_dssp CEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCTTTS--EEEEEHH
T ss_pred eeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHHcCCCCCCCce--EEEeCCH
Confidence 3455544433 34567777777766531111111 122 456666676665 64 454 5 9999999
Q ss_pred hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 134 TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 134 t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
++|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ..++++.+++++ .+++++|+++
T Consensus 96 ~~al~~~~~~~~-~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~ 167 (411)
T 2o0r_A 96 TEAIAAAVLGLV-EPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAV-------TPRTRALIIN 167 (411)
T ss_dssp HHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHC-------CTTEEEEEEE
T ss_pred HHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhh-------ccCceEEEEe
Confidence 999999999997 8898 8899989988765544333222 5555543 235666666533 4678999999
Q ss_pred cccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC----CCCcEEEEccccccc
Q psy16512 209 AESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ----HQPDFISISFYKMFG 277 (815)
Q Consensus 209 ~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~----~~~D~vv~S~~K~~g 277 (815)
+++||||.++|. ++|.++|+ ++|+++|+|++++.+.. +.++.. .+.|+++.|+||+||
T Consensus 168 ~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (411)
T 2o0r_A 168 SPHNPTGAVLSATELAAIAEIAV-----------AANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFN 236 (411)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcC
Confidence 999999999997 55666676 89999999999875431 222222 357899999999999
Q ss_pred cCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HH
Q psy16512 278 YPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TN 354 (815)
Q Consensus 278 ~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~ 354 (815)
++| +|++++++++++.+.... ....++.+.....++.++++........+ ++
T Consensus 237 -~~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~ 291 (411)
T 2o0r_A 237 -CTGWKIGWACGPAELIAGVRAAK------------------------QYLSYVGGAPFQPAVALALDTEDAWVAALRNS 291 (411)
T ss_dssp -CTTTCEEEEECCHHHHHHHHHHH------------------------HHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHH
T ss_pred -CccceEEEEeeCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHHHhCChHHHHHHHHH
Confidence 668 899999887765543211 11122444555666666666432221222 78
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCch
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPG 433 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~ 433 (815)
..++++++.+.|+++ +++++.+.. +.++++.++.... .+..++.+.| .++||.+++|..|...
T Consensus 292 ~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~--~~~~~~~~~l~~~~gi~v~~g~~f~~~ 355 (411)
T 2o0r_A 292 LRARRDRLAAGLTEI-------GFAVHDSYG-------TYFLCADPRPLGY--DDSTEFCAALPEKVGVAAIPMSAFCDP 355 (411)
T ss_dssp HHHHHHHHHHHHHHH-------TCEECCCCB-------SSEEEEECGGGTC--CCHHHHHHHHHHHHSEECEEGGGGSCC
T ss_pred HHHHHHHHHHHHHHc-------CCEecCCCe-------eEEEEEecCCCCC--CCHHHHHHHHHHhCCEEEcChhhhCCC
Confidence 888899999999886 567665432 5577888764210 1233566655 5789999988665321
Q ss_pred hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 434 SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 434 ~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.... .+. ......+++|||++ ++++++++++++|++++.+.
T Consensus 356 ~~~~------~~~----------------~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 356 AAGQ------ASQ----------------QADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp C------------------------------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC--
T ss_pred cccc------ccc----------------cccCCCCeEEEEec--CCHHHHHHHHHHHHHHHhcc
Confidence 1000 000 00001378999997 38999999999998865443
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=233.14 Aligned_cols=312 Identities=11% Similarity=0.094 Sum_probs=201.9
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~ 180 (815)
...+++++++++++|.+ + .++++++++|+.+++.++. ++|| |+++...|+++.... ..+...| ...++..
T Consensus 65 ~~~~~l~~~la~~~g~~-~---~i~~~sG~~a~~~~l~~~~-~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 138 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE-A---GLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA- 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-
T ss_pred hHHHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHHh-cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-
Confidence 33889999999999986 2 4555555799999999987 8898 899999999876544 3335555 3333322
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+....++
T Consensus 139 --d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~ 198 (398)
T 1gc0_A 139 --DLQALEA-------AMTPATRVIYFESPANPNMHMADIAGVAKIAR-----------KHGATVVVDNTYCTPYLQRPL 198 (398)
T ss_dssp --CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHG-----------GGTCEEEEECTTTHHHHCCGG
T ss_pred --CHHHHHH-------hcCCCCeEEEEECCCCCCcccccHHHHHHHHH-----------HcCCEEEEECCCcccccCCch
Confidence 4444444 33467999999999999999999999999999 899999999999877643333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|+||+|++|.+ .|+++++++.++ .+++... .+..++.+....++
T Consensus 199 -~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~ 254 (398)
T 1gc0_A 199 -ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLK-----------------------DMTGAVLSPHDAAL 254 (398)
T ss_dssp -GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHH-----------------------HHTCCCCCHHHHHH
T ss_pred -hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhh-----------------------ccCCCCCCHHHHHH
Confidence 35789999999999997765 499998877654 3322110 11235666666666
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
+..+++.+.. .+++..+.++.+.+.|.++. + ....|+++++.+.. ...+++++|.+.+.
T Consensus 255 ~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~----~~~~~~~~~~l~~~------ 321 (398)
T 1gc0_A 255 LMRGIKTLNL---RMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQM----SQPGGMIAFELKGG------ 321 (398)
T ss_dssp HHHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEEEC--------------------CCTTEEEEEETTH------
T ss_pred HHhccchHHH---HHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhC----CCCceEEEEEECCC------
Confidence 6566654322 23556666777777776641 0 01123444443321 23589999988632
Q ss_pred HHHHHHhhhcCCcEecc---CccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 410 YSEVQNLANLKKIQLRT---GCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
...+.+.+.+.+|.++. |...+ ++....+..++.+. +..+ |...+.||+|++.++++++
T Consensus 322 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~-~~~~--------------g~~~~~iRis~g~~~~~~~ 386 (398)
T 1gc0_A 322 IGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEE-RAHY--------------GISEGLVRLSVGLEDIDDL 386 (398)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHH-HHHT--------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHH-HHhc--------------CCCCCeEEEEeCcCCHHHH
Confidence 12366777788877655 42200 01111111122211 1111 3335899999999999999
Q ss_pred HHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQY 494 (815)
Q Consensus 484 i~~lv~~L~~~ 494 (815)
|+.+.++|+++
T Consensus 387 i~~l~~al~~~ 397 (398)
T 1gc0_A 387 LADVQQALKAS 397 (398)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999874
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=229.06 Aligned_cols=341 Identities=14% Similarity=0.092 Sum_probs=219.7
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc--cC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE--FN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~--~~ 147 (815)
.+++++.+.+++.+.+... ..+|+ .. ..++++.+++++|++ + +++|+|+++|+.+++.++. .+
T Consensus 8 ~~~~~~~v~~a~~~~~~~~-~~~~~------~~----~~~l~~~la~~~~~~--~--v~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSK-QLTQG------KR----SLLFEEALCEFLGVK--H--ALVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSS-CCSSS------HH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCHHHHHHHHHHHHcC-cccCC------hH----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHhcccCC
Confidence 4567788888888776532 22332 23 789999999999986 3 9999999999999999993 38
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
+|| |+++..+|+++.......+... .+++++++.++++.+++++ ++++++|+++++ ||.+.|+++|.+
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~~~---tG~~~~l~~i~~ 142 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLI-------NERTKAIVSVDY---AGKSVEVESVQK 142 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGC-------CTTEEEEEEECG---GGCCCCHHHHHH
T ss_pred CCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhc-------CcCceEEEEeCC---cCCccCHHHHHH
Confidence 898 8899999988766544432222 4455544456777766543 467888888766 999999999999
Q ss_pred HhhccccccccccCCCCeEEEEecccccCCCCCC--CCCCCCcEEEEccc--cccccCCcceEEEEe--cccccccCccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LKQHQPDFISISFY--KMFGYPTGLGALIVK--QKSAHVLNKTF 299 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~~~~~D~vv~S~~--K~~g~p~G~G~l~~~--~~~~~~l~~~~ 299 (815)
+|+ ++|+++|+|++++.+..+.. +..+ .|+++.|++ |+++ | |+|++++. +++.+.+++..
T Consensus 143 l~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~-~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~~~~~~~~~ 208 (375)
T 2fnu_A 143 LCK-----------KHSLSFLSDSSHALGSEYQNKKVGGF-ALASVFSFHAIKPIT-T-AEGGAVVTNDSELHEKMKLFR 208 (375)
T ss_dssp HHH-----------HHTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-C-SSCEEEEESCHHHHHHHHHHT
T ss_pred HHH-----------HcCCEEEEECccccCCeECCeecccc-CCeEEEeCCCCCCcc-c-cCceEEEeCCHHHHHHHHHHH
Confidence 999 89999999999988765432 2222 367777766 9998 7 89999985 44555554433
Q ss_pred ccCceEEEEecCCcccccccCcccccc---CCCC-ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCC
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFE---DGTV-NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~---~gt~-~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
.++.. . . . +.+++ .+.. ....+.++ .++..+..+....++.+++++++.+.|+++
T Consensus 209 ~~~~~-~---~-~---------~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------ 267 (375)
T 2fnu_A 209 SHGML-K---K-D---------FFEGEVKSIGHNFRLNEIQSA-LGLSQLKKAPFLMQKREEAALTYDRIFKDN------ 267 (375)
T ss_dssp BTTEE-E---S-S---------SSCEEESSCCCBCCCCHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred hcCCc-c---c-c---------ccccccccccccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 22221 0 0 0 00111 1111 11111111 122222222222388889999999999987
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcC-------CCHHHHH
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG-------LSDITIK 447 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g-------~~~~~~~ 447 (815)
|+++++.+... ....+.++.+.++.. .+ +..++.+.|.++||.++. .|.+......++ +...+
T Consensus 268 ~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gi~v~~--~~~p~~~~~~~~~~~~~~~~~~~~-- 338 (375)
T 2fnu_A 268 PYFTPLHPLLK--DKSSNHLYPILMHQK---FFTCKKLILESLHKRGILAQV--HYKPIYQYQLYQQLFNTAPLKSAE-- 338 (375)
T ss_dssp SSEEESGGGCS--SCCCCSCEEEEECGG---GGGGHHHHHHHHHHTTEECBC--CCCCGGGSHHHHHHHCCCCCHHHH--
T ss_pred CCccccCCCCC--CCcceEEEEEEeCcc---ccchHHHHHHHHHHCCCCccc--cccccccchhhhcCCCccCChHHH--
Confidence 78888765210 011234456666531 11 234688888899999984 344432211111 10000
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
....+++||+++.++|++|+++++++|++++.
T Consensus 339 -----------------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~ 370 (375)
T 2fnu_A 339 -----------------DFYHAEISLPCHANLNLESVQNIAHSVLKTFE 370 (375)
T ss_dssp -----------------HHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence 01137899999999999999999999999764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=234.40 Aligned_cols=343 Identities=10% Similarity=0.028 Sum_probs=221.7
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCceeEEecCCchhh
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~iv~t~g~t~a 136 (815)
.+.|..+... ..++.+.+++.+.+...........+..... ..++++.+++++ ++++++ |++|+|++++
T Consensus 71 ~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~lr~~ia~~~~~g~~~~~~~--i~~t~G~~~a 144 (449)
T 3qgu_A 71 IISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQG----QGALREAVASTFYGHAGRAADE--IFISDGSKCD 144 (449)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTC----CHHHHHHHHHHHHTTTTCCGGG--EEEESCHHHH
T ss_pred EEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCC----cHHHHHHHHHHHHcCCCCCHHH--EEEccCHHHH
Confidence 3445444333 3567788888776653211011111222233 678999999998 777776 9999999999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc----------c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN----------Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~----------g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+.++ .++. ++|| |++..+.|+++......++.. . .++++.++.+..+. ++ .+++++
T Consensus 145 l~~~-~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~ 212 (449)
T 3qgu_A 145 IARI-QMMF-GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDL-SK---------AKRTDI 212 (449)
T ss_dssp HHHH-HHHH-CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCG-GG---------CCCCSE
T ss_pred HHHH-HHHh-CCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCCh-hH---------cCCCCE
Confidence 9998 7777 8998 999999999988777777665 3 55666543333221 11 156899
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCC----CCcEEEEcccccc
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQH----QPDFISISFYKMF 276 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~----~~D~vv~S~~K~~ 276 (815)
|++++++||||.++|.+++.++++ .|+++|+++|+|++++.. ..+.++..+ +.++++.|++|+|
T Consensus 213 v~l~~p~NPtG~~~~~~~l~~l~~--------l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 213 IFFCSPNNPTGAAATRAQLTELVN--------FARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp EEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred EEEeCCCCCCCCcCCHHHHHHHHH--------HHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc
Confidence 999999999999999666555443 233899999999998762 222233222 4568999999999
Q ss_pred ccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH--hhhhhH
Q psy16512 277 GYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME--KKRKSF 352 (815)
Q Consensus 277 g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~--~~~~~~ 352 (815)
| ++| +|++++++++++.....+.. .+. ........+.+.++..++.++++... ......
T Consensus 285 g-~~G~r~G~~~~~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 347 (449)
T 3qgu_A 285 G-FTGVRLGWTVVPKALKYANGEPVHA-----------DWN-----RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMI 347 (449)
T ss_dssp T-CTTCCCEEEECCTTCBCTTSCBHHH-----------HHH-----HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred C-CccceeEEEecCHHHHhhhhhhHHH-----------HHH-----HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHH
Confidence 8 556 89999988876420000000 000 00112233566677776666665421 121122
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCC
Q psy16512 353 TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCN 431 (815)
Q Consensus 353 ~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~ 431 (815)
+++.++++++.+.|+++ +++++.+.. +.++++.+++ .+..++.+.| +++||.+++|..|.
T Consensus 348 ~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~~l~~~~gI~v~pg~~f~ 408 (449)
T 3qgu_A 348 KFYKENAQILKTTFTEM-------GFSVYGGDD-------APYIWVGFPG-----KPSWDVFAEILERCNIVTTPGSGYG 408 (449)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCCEEESSS-------SSEEEEECTT-----SCHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHHHC-------CCeeeCCCC-------eeEEEEECCC-----CCHHHHHHHHHHHCCEEEecchHhC
Confidence 78889999999999887 566665432 6777777762 1223455555 55699999987665
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
+.. .+++|||+. .+++++++++++|++++....+.
T Consensus 409 ~~~---------------------------------~~~iRis~~--~~~e~i~~~l~~l~~~~~~~~~~ 443 (449)
T 3qgu_A 409 PAG---------------------------------EGFVRASAF--GSRENILEAVRRFKEAYGKRNAS 443 (449)
T ss_dssp GGG---------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHC-----
T ss_pred CCC---------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHhcCcc
Confidence 311 379999965 49999999999999987665544
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-24 Score=236.74 Aligned_cols=330 Identities=12% Similarity=0.071 Sum_probs=219.3
Q ss_pred hhhhhhhcc---c-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecC
Q psy16512 62 ICYLDYTGA---G-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTS 131 (815)
Q Consensus 62 ~iyLd~a~~---~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~ 131 (815)
.++|+.+.. . ..++.+.+++.+.+.......+ .... ..++++.+++++ ++++++ |++|+
T Consensus 40 ~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~-----~~~g----~~~l~~~la~~l~~~~g~~~~~~~--v~~t~ 108 (406)
T 1xi9_A 40 VIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYG-----DSEG----LPELRKAIVEREKRKNGVDITPDD--VRVTA 108 (406)
T ss_dssp CEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCC-----CTTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEES
T ss_pred EEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCC-----CCCC----cHHHHHHHHHHHHHhcCCCCCHHH--EEEcC
Confidence 455665544 2 3456777777666643211111 1122 567777788776 455666 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+++|+.+++.++. ++|| |++...+|+++.......+... .++.+.+. .++++.+++++ .+++++|++
T Consensus 109 g~~~al~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i 180 (406)
T 1xi9_A 109 AVTEALQLIFGALL-DPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI-------TDRTKAIAV 180 (406)
T ss_dssp HHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHC-------CTTEEEEEE
T ss_pred ChHHHHHHHHHHhC-CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhh-------CcCceEEEE
Confidence 99999999999996 8898 8899988887655444332222 45555422 34666666543 357899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCCC--CCC-cEEEEcccccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLKQ--HQP-DFISISFYKMFGY 278 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~~--~~~-D~vv~S~~K~~g~ 278 (815)
++++||||.++| +++|.++|+ ++|+++|+|++++.+.. +.++.. .+. ++++.|+||+++
T Consensus 181 ~~p~nptG~~~~~~~l~~i~~~a~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 248 (406)
T 1xi9_A 181 INPNNPTGALYDKKTLEEILNIAG-----------EYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF- 248 (406)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-
T ss_pred ECCCCCCCCCcCHHHHHHHHHHHH-----------HcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccC-
Confidence 999999999998 666777777 89999999999876432 122222 245 789999999998
Q ss_pred CCc--ceEEE--Eec----ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh
Q psy16512 279 PTG--LGALI--VKQ----KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK 350 (815)
Q Consensus 279 p~G--~G~l~--~~~----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~ 350 (815)
++| +|+++ .++ ++++.+.... ... ++.+.....++.++++.......
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l~~~l~~~~------------------------~~~-~~~~~~~~~a~~~~l~~~~~~~~ 303 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEVREAIDRLA------------------------RIR-LCPNTPAQFAAIAGLTGPMDYLK 303 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHHHHHHHHHH------------------------HHT-CCSCSHHHHHHHHHHHSCCHHHH
T ss_pred CCccEEEEEEEecCchhHHHHHHHHHHHH------------------------Hhh-cCCCHHHHHHHHHHHhCCcHHHH
Confidence 667 89999 777 6655442211 111 45666677777677642211111
Q ss_pred h-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCc
Q psy16512 351 S-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGC 428 (815)
Q Consensus 351 ~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~ 428 (815)
. .++..++++++.+.|+++ |+++++.+.. +.++.+.++...+ .+..++.+.|. ++||.+++|.
T Consensus 304 ~~~~~~~~~~~~l~~~L~~~------~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~~l~~~l~~~~gi~v~~g~ 368 (406)
T 1xi9_A 304 EYMKKLKERRDYIYKRLNEI------PGISTTKPQG-------AFYIFPKIEVGPW--KNDKEFVLDVLHNAHVLFVHGS 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------SSEECCEECSCSC--SSHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHHhC------CCCeeecCCe-------eEEEEEecCccCC--CCHHHHHHHHHHhCCEEEeCch
Confidence 2 277888899999999887 6787765432 3444445542101 22345666664 8999999886
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.|... ..+++|+|++ +++++++++++.|.+++.+
T Consensus 369 ~f~~~---------------------------------~~~~lRis~~--~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 369 GFGEY---------------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp GGCGG---------------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred hcCCC---------------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 55320 0378999998 7999999999999987743
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=235.45 Aligned_cols=307 Identities=13% Similarity=0.078 Sum_probs=200.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+ + .+++++| ++|+.+++. +. ++|| |+++...|++.+. +...+...| ...++.+
T Consensus 69 ~~~l~~~la~~~g~~-~--~i~~~sG-~~ai~~~~~-l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 139 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-Y--CLAFASG-LAATVTITH-LL-KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS--- 139 (403)
T ss_dssp HHHHHHHHHHHHTCS-E--EEEESCH-HHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c--EEEECCH-HHHHHHHHH-Hh-CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence 788999999999986 3 3777666 589999998 75 8998 9999999987665 444455566 4444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC-eEEEEecccccCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN-CFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g-i~vivD~a~~~g~~~~dl~ 261 (815)
+++.+++ .++++|++|++++++||||.+.|+++|.++|+ ++| +++|+|++++.+.....+
T Consensus 140 d~~~l~~-------~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~-----------~~g~~~livD~~~~~~~~~~~~- 200 (403)
T 3cog_A 140 KIKLLEA-------AITPETKLVWIETPTNPTQKVIDIEGCAHIVH-----------KHGDIILVVDNTFMSPYFQRPL- 200 (403)
T ss_dssp SHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT-----------SSSCCEEEEECTTTCTTTCCTT-
T ss_pred CHHHHHH-------hcCcCCeEEEEECCCCCCCeeeCHHHHHHHHH-----------HcCCCEEEEECCCcccccCCcc-
Confidence 4444444 33468999999999999999999999999999 899 999999999887532233
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|+++.|+||+|++|.| +|+++++ +++.+.+++...+ ..++.+....+++
T Consensus 201 ~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~------------------------~g~~~~~~~~~~~ 256 (403)
T 3cog_A 201 ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNS------------------------LGAVPSPIDCYLC 256 (403)
T ss_dssp TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHH------------------------HCCCCCHHHHHHH
T ss_pred ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHh------------------------cCCCCCHHHHHHH
Confidence 25899999999999998876 4999986 4655555332211 1224455555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
..+++.+.. .+++..+.+..+.+.|++.+ + ....|+++++.+. ....+++++|.+++..
T Consensus 257 ~~~l~~l~~---r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~----~~~~g~~~~~~l~~~~------ 323 (403)
T 3cog_A 257 NRGLKTLHV---RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQ----CTGCTGMVTFYIKGTL------ 323 (403)
T ss_dssp HHHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHH----CSCCCSEEEEEESSCH------
T ss_pred HhhhhHHHH---HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhc----CCCCceEEEEEecCCH------
Confidence 555554322 23444555555666665541 0 0011233322211 0134889999876421
Q ss_pred HHHHHhhhcCCcEecc---Cc------cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 411 SEVQNLANLKKIQLRT---GC------HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~---g~------~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
..+.+.+.+.||.++. |. +|.... +..++.+.. ..+ |...+.||+|+|.++++
T Consensus 324 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~---~~~~~~~~~-~~~--------------g~~~~~iRlSvg~e~~~ 385 (403)
T 3cog_A 324 QHAEIFLKNLKLFTLAESLGGFESLAELPAIMT---HASVLKNDR-DVL--------------GISDTLIRLSVGLEDEE 385 (403)
T ss_dssp HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTT---TTTSCHHHH-HHH--------------TCCTTEEEEECCSSCHH
T ss_pred HHHHHHHHhCCcceEccCCCCcceeeecccccc---cccCCHHHH-Hhc--------------CCCcCeEEEEeCCCCHH
Confidence 2467778888886542 42 332211 111111111 111 23358999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
++|++|.++|++++.
T Consensus 386 d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 386 DLLEDLDQALKAAHP 400 (403)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988654
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-23 Score=225.26 Aligned_cols=303 Identities=14% Similarity=0.115 Sum_probs=211.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+ .....+|.. . ..++|+++++++|+++++ |++|+|+++|+.+++.++. || |
T Consensus 29 ~~~~v~~a~~~~~-~~~~~y~~~------~----~~~lr~~la~~~~~~~~~--i~~t~g~~~al~~~~~~l~---gd~V 92 (350)
T 3fkd_A 29 DKDHLEKHLVENL-NCIRHYPEP------D----AGTLRQMLAKRNSVDNNA--ILVTNGPTAAFYQIAQAFR---GSRS 92 (350)
T ss_dssp CCHHHHHHHHHTG-GGGGSCCCT------T----CHHHHHHHHHHTTCCGGG--EEEESHHHHHHHHHHHHTT---TCEE
T ss_pred CCHHHHHHHHHhH-hHHhcCCCC------c----HHHHHHHHHHHhCcCHHH--EEEcCCHHHHHHHHHHHHC---CCEE
Confidence 5577777776655 223333331 1 468999999999998887 9999999999999999986 88 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEc-CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSF-SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~-~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
++....|+++.......+... .+++ +.++.+++ +++++|++++++||||.++|+++|.++++
T Consensus 93 i~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~---------------~~~~~v~i~~p~nptG~~~~~~~l~~l~~- 156 (350)
T 3fkd_A 93 LIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF---------------SNMDFCWLCNPNNPDGRLLQRTEILRLLN- 156 (350)
T ss_dssp EEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC---------------TTCSEEEEESSCTTTCCCCCHHHHHHHHH-
T ss_pred EEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc---------------CCCCEEEEeCCCCCcCCCCCHHHHHHHHH-
Confidence 888878777654444332222 5555 43332222 35899999999999999999999999998
Q ss_pred cccccccccCCCCeEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~ 302 (815)
.|++ .++|+|++++..... ..+...+.++++.|+||++| ++| +|++++++++++.+....
T Consensus 157 -------~~~~--~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~--- 223 (350)
T 3fkd_A 157 -------DHPD--TTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYG-IPGLRIGYIVANKDFMKRVAAFS--- 223 (350)
T ss_dssp -------HCTT--SEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHS-CGGGCCEEEECCHHHHHHHHTTC---
T ss_pred -------hCCC--CEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhcc-CcchheEeEEeCHHHHHHHHHhC---
Confidence 2223 399999998643211 11223455688999999998 445 799999887766553221
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
..++++..+..++..+++....+....++..++++++.+.|+++ |+++++.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~ 274 (350)
T 3fkd_A 224 -----------------------TPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL------DGVEVHP 274 (350)
T ss_dssp -----------------------CTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS------TTEEECC
T ss_pred -----------------------CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC------CCcEECC
Confidence 12356666666666666543222233344458899999999887 7888864
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
+. ++++.+.++.. +..++.+.|.+ +||.+++|..|..
T Consensus 275 ~~--------~~~~~~~~~~~-----~~~~l~~~L~~~~gi~v~~g~~f~~----------------------------- 312 (350)
T 3fkd_A 275 SG--------TTFFLLRLKKG-----TAAELKKYMLEEYNMLIRDASNFRG----------------------------- 312 (350)
T ss_dssp CS--------SSEEEEEESSS-----CHHHHHHHHHHTTCEECEECTTSTT-----------------------------
T ss_pred CC--------CcEEEEECCCC-----CHHHHHHHHHHHCCEEEEeCccCCC-----------------------------
Confidence 32 67777887653 23457777777 9999999876531
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+++|+|++ +.+++++++++|+++....
T Consensus 313 ----~~~~~iRis~~---~~~~~~~l~~al~~~~~~~ 342 (350)
T 3fkd_A 313 ----LDESYVRITTQ---RPAQNQLFIKALETFLEKY 342 (350)
T ss_dssp ----CCTTEEEEECC---CHHHHHHHHHHHHHHHTC-
T ss_pred ----CCCCEEEEEcC---CHHHHHHHHHHHHHHHHHh
Confidence 11379999998 8899999999999976544
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=235.93 Aligned_cols=363 Identities=12% Similarity=0.065 Sum_probs=227.0
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
..|+++...+..+..+..++.....+.....+........+ .+++++++++++|++.+...++||+|+|+|+.+++
T Consensus 93 p~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l----e~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al 168 (504)
T 2okj_A 93 PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLM----EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI 168 (504)
T ss_dssp TTEESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHHHHHH----HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHH
T ss_pred CCEEEEccCCCCHHHHHHHHHHHhhccCCCchhhChHHHHH----HHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHH
Confidence 45777776666666655544443322111111111222222 55677999999999831224999999999999998
Q ss_pred hhhcc-------CCC-----c--EEEecCCCcchhhHHHHhhc---cc-eEEcCchhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 142 EYFEF-------NEG-----S--FIYLTDNHTSVLGMRELVKT---NQ-IYSFSVDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 142 ~al~~-------~~g-----d--vv~~~~~h~s~~~~~~~~~~---~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
.++.. ++| + ++++...|+++......++. .. .++++.++.++++.++++|+.-. ....+|+
T Consensus 169 ~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~-~~g~~~~ 247 (504)
T 2okj_A 169 MAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAK-QKGYVPF 247 (504)
T ss_dssp HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEE
T ss_pred HHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHH-HCCCCce
Confidence 88752 245 5 77778899998776666543 12 56666666788888887664111 1122589
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCCC-CCCcEEEEccccccc
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQ-HQPDFISISFYKMFG 277 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~-~~~D~vv~S~~K~~g 277 (815)
+|++++++|+||.+.|+++|+++|+ ++|+++|+|++++.+... ..+.. .++|++++|+|||++
T Consensus 248 ~V~~~~~~~~tG~i~~l~~I~~la~-----------~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~ 316 (504)
T 2okj_A 248 YVNATAGTTVYGAFDPIQEIADICE-----------KYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMG 316 (504)
T ss_dssp EEEECBSCSSSCCBCCHHHHHHHHH-----------HHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTC
T ss_pred EEEEeCCCCCCCCcCCHHHHHHHHH-----------HcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcC
Confidence 9999999999999999999999999 899999999998877643 22332 268999999999999
Q ss_pred cCCcceEEEEecc-cccc----cCcccccCceEEE-EecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--
Q psy16512 278 YPTGLGALIVKQK-SAHV----LNKTFYGGGTVKI-SMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-- 349 (815)
Q Consensus 278 ~p~G~G~l~~~~~-~~~~----l~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-- 349 (815)
+|.|+|+++++++ .++. ..+.+.+++.... ......+. -+..++ .+...++++ ++.+...+
T Consensus 317 ~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~rr-----~~~l~~~a~---l~~lg~~g~~ 385 (504)
T 2okj_A 317 VLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA---IQCGRH-----VDIFKFWLM---WKAKGTVGFE 385 (504)
T ss_dssp CCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS---SCSSCB-----CCHHHHHHH---HHHHHHHHHH
T ss_pred CCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC---CCCCCC-----ccHHHHHHH---HHHhhHHHHH
Confidence 8989999999874 4432 1122222221000 00000000 000111 123333333 33333222
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC--C----Cc----cC--HHHHHHhh
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD--G----TY----YG--YSEVQNLA 417 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~--~----~~----~~--~~~v~~~l 417 (815)
...++..++++++.+.|+++ |+++++.+.. ...++++|...... + .. ++ ...+.+.|
T Consensus 386 ~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~~-----p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 454 (504)
T 2okj_A 386 NQINKCLELAEYLYAKIKNR------EEFEMVFNGE-----PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALM 454 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------TTEEESSSSC-----CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCEEEEecCC-----CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHH
Confidence 12388899999999999987 7899986311 23567788763211 0 00 00 13466677
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~ 496 (815)
.++|+.+..+... .+ ..+++|++++ .++|++||++++++|+++..
T Consensus 455 ~~~G~~~~~~~~~---------------------------------~~-~~~~lRis~~~~~~t~edi~~~~~~l~~~~~ 500 (504)
T 2okj_A 455 MESGTTMVGYQPQ---------------------------------GD-KANFFRMVISNPAATQSDIDFLIEEIERLGQ 500 (504)
T ss_dssp HHHTSCEEEEEEE---------------------------------TT-EEEEEEECCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HhCCcEEEEeeEE---------------------------------CC-ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 7777543221100 01 0268999996 89999999999999998764
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-23 Score=229.92 Aligned_cols=326 Identities=12% Similarity=0.112 Sum_probs=215.1
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cC--CCCCceeEEecCCchh
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FN--TDSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~~~iv~t~g~t~ 135 (815)
++|..+... ..++.+.+++.+.+.......+.. ..++++.++++ +| +++++ |++|+|+++
T Consensus 34 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----------~~~l~~~la~~l~~~~g~~~~~~~--v~~t~g~~~ 100 (399)
T 1c7n_A 34 VPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP-----------TEEYKKTVKKWMKDRHQWDIQTDW--IINTAGVVP 100 (399)
T ss_dssp CCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC-----------CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHH
T ss_pred eeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC-----------cHHHHHHHHHHHHHHhCCCCChhh--EEEcCCHHH
Confidence 444444332 345677777777664322222211 34566666665 47 55666 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eE--EcCch-h--hhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IY--SFSVD-D--ARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v--~~~~~-~--~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
|+.+++.++. ++|| |++..+.|+++..... ..| .+ +.+.+ + .++++.++++++ .+++++|++
T Consensus 101 a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~------~~~~~~v~~ 170 (399)
T 1c7n_A 101 AVFNAVREFT-KPGDGVIIITPVYYPFFMAIK---NQERKIIECELLEKDGYYTIDFQKLEKLSK------DKNNKALLF 170 (399)
T ss_dssp HHHHHHHHHC-CTTCEEEECSSCCTHHHHHHH---TTTCEEEECCCEEETTEEECCHHHHHHHHT------CTTEEEEEE
T ss_pred HHHHHHHHhc-CCCCEEEEcCCCcHhHHHHHH---HcCCEEEecccccCCCCEEEcHHHHHHHhc------cCCCcEEEE
Confidence 9999999997 8898 8888877777654433 344 33 33312 1 256666665432 256899999
Q ss_pred ecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCC-----CCcEEEEccccc
Q psy16512 208 PAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQH-----QPDFISISFYKM 275 (815)
Q Consensus 208 ~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~-----~~D~vv~S~~K~ 275 (815)
++++||||.++| +++|.++|+ ++|+++|+|++++... .+.++..+ +.++++.|+||+
T Consensus 171 ~~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~ 239 (399)
T 1c7n_A 171 CSPHNPVGRVWKKDELQKIKDIVL-----------KSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKT 239 (399)
T ss_dssp ESSBTTTTBCCCHHHHHHHHHHHH-----------HSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHH
T ss_pred cCCCCCCCcCcCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhh
Confidence 999999999999 667777777 8999999999987532 22333322 456889999999
Q ss_pred cccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-
Q psy16512 276 FGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS- 351 (815)
Q Consensus 276 ~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~- 351 (815)
|| ++| +|++++++ ++++.+.... ..+..++++..+..++.++++.....-..
T Consensus 240 ~~-~~G~r~G~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 295 (399)
T 1c7n_A 240 FN-IAGMGMSNIIIKNPDIRERFTKSR-----------------------DATSGMPFTTLGYKACEICYKECGKWLDGC 295 (399)
T ss_dssp HT-CGGGCCEEEECCCHHHHHHHHHHH-----------------------HHTTCCCCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred cc-ccchheEEEEECCHHHHHHHHHHH-----------------------hhcccCCCCHHHHHHHHHHHhCChHHHHHH
Confidence 98 557 79999874 4665543221 01222356777777777777642222122
Q ss_pred HHHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCcc
Q psy16512 352 FTNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCH 429 (815)
Q Consensus 352 ~~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~ 429 (815)
.++..++++++.+.|++ + |+++++.+.. +.++++.++... .+..++.+.|. ++||.+++|..
T Consensus 296 ~~~~~~~~~~l~~~L~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~~l~~~~gi~v~~g~~ 359 (399)
T 1c7n_A 296 IKVIDKNQRIVKDFFEVNH------PEIKAPLIEG-------TYLQWIDFRALK---MDHKAMEEFMIHKAQIFFDEGYI 359 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHC------TTSBCCCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTTCCCCEEGGG
T ss_pred HHHHHHHHHHHHHHHHhhC------CCCeEecCCc-------eEEEEEEcccCC---CCHHHHHHHHHHhCCEEEeCccc
Confidence 27788889999999987 6 5666554331 344457775320 22345777775 79999998866
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|.+. ..+++|+|++.. +++++++++.|.+++.+
T Consensus 360 ~~~~---------------------------------~~~~iRis~~~~--~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 360 FGDG---------------------------------GIGFERINLAAP--SSVIQESLERLNKALKD 392 (399)
T ss_dssp GCGG---------------------------------GTTEEEEECCSC--HHHHHHHHHHHHHHHHH
T ss_pred cCCC---------------------------------CCCeEEEEeccC--HHHHHHHHHHHHHHHHH
Confidence 5421 037899999864 78999999999987643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=234.00 Aligned_cols=316 Identities=15% Similarity=0.133 Sum_probs=206.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.++.+.+++.+.+.......+. ... ..++++.+++++ |+ ++++ |++|+|+++|+.+++.++.
T Consensus 44 ~~~~v~~a~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~~~a~~~~~~~~~- 111 (388)
T 1j32_A 44 TPKHIVEAAKAALEQGKTRYGP-----AAG----EPRLREAIAQKLQRDNGLCYGADN--ILVTNGGKQSIFNLMLAMI- 111 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHHHHHhcCCCCChhh--EEEcCCHHHHHHHHHHHhc-
Confidence 4566777776665432111111 112 455666666665 53 4555 9999999999999999996
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP--- 219 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~--- 219 (815)
++|| |++...+|+++....+..+... .++.+.+ ..++++.+++++ .+++++|++++++||||.++|
T Consensus 112 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~nptG~~~~~~~ 184 (388)
T 1j32_A 112 EPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI-------TPKTKLLVFNTPSNPTGMVYTPDE 184 (388)
T ss_dssp CTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC-------CTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc-------CcCceEEEEeCCCCCCCcCCCHHH
Confidence 8998 8899988888765444332222 4455442 235666666533 457899999999999999987
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC-----CCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+++|.++|+ ++|+++|+|++++.... ..++.. .+.|+++.|+||+|| ++| +|+++++
T Consensus 185 l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~-~~G~r~G~~~~~ 252 (388)
T 1j32_A 185 VRAIAQVAV-----------EAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGP 252 (388)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECC
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccC-CcccceEEEEeC
Confidence 566677777 89999999999875321 112221 346899999999998 668 8999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFK 367 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~ 367 (815)
+++++.+.+... ....+.+.....++.++++........ .++..++++++.+.|+
T Consensus 253 ~~~~~~l~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 308 (388)
T 1j32_A 253 VPLVKAATKIQG------------------------HSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALN 308 (388)
T ss_dssp HHHHHHHHHHHH------------------------TTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------------------------hcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 887665533211 111233445555554555421111112 2778888999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDITI 446 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~~~ 446 (815)
++ |+++++.+.. +.++.+.++.. + .+..++.+.|. ++||.+++|..|..
T Consensus 309 ~~------~g~~~~~~~~-------~~~~~~~~~~~-~--~~~~~~~~~l~~~~gi~v~~g~~~~~-------------- 358 (388)
T 1j32_A 309 AM------PGLECPKPDG-------AFYMFPSIAKT-G--RSSLDFCSELLDQHQVATVPGAAFGA-------------- 358 (388)
T ss_dssp TC------TTCBCCCCCB-------TTEECCBCGGG-T--CCHHHHHHHHHHHHCEECEEGGGGTC--------------
T ss_pred hC------CCCcccCCCe-------eEEEEEecCCC-C--CCHHHHHHHHHHhCCEEEeChhhhCC--------------
Confidence 87 6776664432 33444444321 1 23345777775 47999988754321
Q ss_pred HHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 447 KFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 447 ~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++ +++++++++++.|++++.
T Consensus 359 ---------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 359 ---------------------DDCIRLSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp ---------------------TTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCcEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 268999997 689999999999998764
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=232.67 Aligned_cols=328 Identities=13% Similarity=0.046 Sum_probs=217.5
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCch
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t 134 (815)
.++|+.+... ..++.+.+++ +.+.......+ .... ..++++.++++++ +++++ |++|+|++
T Consensus 45 ~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~-----~~~g----~~~l~~~la~~~~~~~g~~~~~~~--v~~~~g~t 112 (409)
T 2gb3_A 45 IHHLNIGQPDLKTPEVFFERI-YENKPEVVYYS-----HSAG----IWELREAFASYYKRRQRVDVKPEN--VLVTNGGS 112 (409)
T ss_dssp EEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCC-----CTTC----CHHHHHHHHHHHHHTSCCCCCGGG--EEEESHHH
T ss_pred EEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCC-----CCCC----cHHHHHHHHHHHHHHhCCCCCHHH--EEEeCCHH
Confidence 4566655544 3456777777 65543111111 1122 5677788888764 45555 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc-chhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN-MLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~-~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+|+.+++.++. ++|| |++....|+++.......+... .++.+.++.++ ++.++++ +.+++++|++++++
T Consensus 113 ~a~~~~~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~-------l~~~~~~v~~~~p~ 184 (409)
T 2gb3_A 113 EAILFSFAVIA-NPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESF-------INERTKGIVLSNPC 184 (409)
T ss_dssp HHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGG-------CCTTEEEEEEESSC
T ss_pred HHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCccHHHHHHh-------hCcCCeEEEECCCC
Confidence 99999999997 8898 8899989988766554443332 56666433333 5555543 34578999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC---CCC-CCC-CCCcEEEEccccccccCCc--
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLD-LKQ-HQPDFISISFYKMFGYPTG-- 281 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~d-l~~-~~~D~vv~S~~K~~g~p~G-- 281 (815)
||||.++| +++|.++|+ ++|+++|+|++++.+.. +.+ +.. .+.|+++.|+||+|| ++|
T Consensus 185 nptG~~~~~~~l~~i~~~~~-----------~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r 252 (409)
T 2gb3_A 185 NPTGVVYGKDEMRYLVEIAE-----------RHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFS-ACGAR 252 (409)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTT-CGGGC
T ss_pred CCCCCCcCHHHHHHHHHHHH-----------HcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccC-Cccce
Confidence 99999987 455666676 89999999999876532 222 222 357999999999998 567
Q ss_pred ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHH
Q psy16512 282 LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELS 359 (815)
Q Consensus 282 ~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~ 359 (815)
+|++++++ ++++.+.... .... +.+.+...++.++++........ .++..+++
T Consensus 253 ~G~~~~~~~~l~~~l~~~~------------------------~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 307 (409)
T 2gb3_A 253 VGCLITRNEELISHAMKLA------------------------QGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERV 307 (409)
T ss_dssp CEEEECSCHHHHHHHHHHH------------------------HHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHH------------------------hccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 89999998 7766553221 0111 45666666666666431111122 27778888
Q ss_pred HHHHHHHHhccccCCCCcEEE-cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC------CcEeccCccCCc
Q psy16512 360 QYTYFYFKQLSYSNGQPLVEL-YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK------KIQLRTGCHCNP 432 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l-~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~------gI~v~~g~~~~~ 432 (815)
+++.+.|+++ ++++ ..+. .+.++.+.+++ .+..++.+.|.++ ||.+++|..|..
T Consensus 308 ~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~ 368 (409)
T 2gb3_A 308 ETVLKKLEEH-------GLKRFTKPS-------GAFYITAELPV-----EDAEEFARWMLTDFNMDGETTMVAPLRGFYL 368 (409)
T ss_dssp HHHHHHHHHT-------TCCCBCCCS-------BSSEEEEECSS-----SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS
T ss_pred HHHHHHHHHc-------CceeeeCCC-------eeEEEEEEeCC-----CCHHHHHHHHHhccccccCcEEEeCchHhCC
Confidence 8999999876 4555 3332 24555556652 2334577777655 999998765432
Q ss_pred hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 433 GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 433 ~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.. +...+++|++++ ++++++++++++|++++.+
T Consensus 369 ~~------------------------------~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~ 401 (409)
T 2gb3_A 369 TP------------------------------GLGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 401 (409)
T ss_dssp ST------------------------------TTTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred CC------------------------------CCCCCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 10 111478999998 7999999999999988753
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-24 Score=236.77 Aligned_cols=324 Identities=10% Similarity=0.062 Sum_probs=217.3
Q ss_pred ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC---CceeEEecCCchhhHHHHHhhhccC
Q psy16512 72 VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS---DHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~---~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
..++.+.+++.+.+... .+..+.. ...... .+++.+.+++++|.+. ++ |++|+|+++|+.+++.++. +
T Consensus 53 ~~~~~v~~a~~~~~~~~~~~~y~~~-~g~~~l----~~~l~~~l~~~~g~~~~~~~~--i~~~~g~~~a~~~~~~~l~-~ 124 (407)
T 3nra_A 53 EPTPGAFDLFSAGVQSGGVQAYTEY-RGDLGI----RDLLAPRLAAFTGAPVDARDG--LIITPGTQGALFLAVAATV-A 124 (407)
T ss_dssp CCCTTHHHHHHHHHHHTHHHHSCCT-TCCHHH----HHHHHHHHHHHHTSCCCTTTS--EEEESHHHHHHHHHHHTTC-C
T ss_pred CCcHHHHHHHHHHHhcCCCCCcCCC-CCCHHH----HHHHHHHHHHHhCCCCCCCCc--EEEeCCcHHHHHHHHHHhC-C
Confidence 46677888887766532 1111110 112233 6678888888888752 45 9999999999999999997 8
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcC------chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS------VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~------~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++....|+++....+..+... .++.+ .+..++++.++++++ +++++|++++++||||.++|
T Consensus 125 ~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~~v~~~~p~nptG~~~~ 197 (407)
T 3nra_A 125 RGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK-------AGARVFLFSNPNNPAGVVYS 197 (407)
T ss_dssp TTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH-------TTCCEEEEESSCTTTCCCCC
T ss_pred CCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh-------hCCcEEEEcCCCCCCCcccC
Confidence 999 8888888887765555443332 55652 344567777776553 47899999999999999999
Q ss_pred ---hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCC-----CCCCcEEEEccccccccCCc--ceEE
Q psy16512 220 ---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLK-----QHQPDFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 220 ---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~-----~~~~D~vv~S~~K~~g~p~G--~G~l 285 (815)
+++|.++|+ ++|+++|+|++|+.+. ....+. ..+.++++.|+||+|| ++| +|++
T Consensus 198 ~~~l~~i~~~~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~ 265 (407)
T 3nra_A 198 AEEIGQIAALAA-----------RYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTES-LSGYRLGVA 265 (407)
T ss_dssp HHHHHHHHHHHH-----------HHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTC-CGGGCCEEE
T ss_pred HHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccC-CCeeeEEEE
Confidence 666777777 8999999999987632 222222 2345688999999998 446 7999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYF 364 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~ 364 (815)
+.++++++.+.... +....+.+.....++..+++.... .....++.+++++++.+
T Consensus 266 ~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 321 (407)
T 3nra_A 266 FGSRAIIARMEKLQ------------------------AIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLH 321 (407)
T ss_dssp EECHHHHHHHHHHH------------------------HHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHH------------------------hhhccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99887766553221 111223344444444444331111 11122777888899999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.|+++ |+++++.+.. +.++.+.++.. ..+..++.+.| +++||.+++|..|.+.
T Consensus 322 ~L~~~------~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~l~~~~gi~v~~g~~~~~~---------- 375 (407)
T 3nra_A 322 VLRGC------EGVFARTPQA-------GSYLFPRLPKL---AVAPAEFVKILRLQAGVVVTPGTEFSPH---------- 375 (407)
T ss_dssp HHHTS------TTCBCCCCSB-------SSEECCBCCCB---SSCHHHHHHHHHHHHCEECEEGGGTCTT----------
T ss_pred HHhcC------CCceeccCCe-------eEEEEEeCCCC---CCCHHHHHHHHHHhCCEEEeCchhhCCC----------
Confidence 99887 6777665432 45665555431 12334577777 4579999998766531
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|+|++. +++++++++++|.+++.+
T Consensus 376 -----------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 376 -----------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVER 404 (407)
T ss_dssp -----------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 13789999984 899999999999998753
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=235.25 Aligned_cols=313 Identities=13% Similarity=0.080 Sum_probs=204.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + .++++++++|+.+++.++. ++|| |+++...|+++.... ..+...| .+.++.+
T Consensus 66 ~~~l~~~la~~~g~~-~---~i~~~sG~~a~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--- 137 (398)
T 2rfv_A 66 TDALEKKLAVLERGE-A---GLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA--- 137 (398)
T ss_dssp HHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c---EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC---
Confidence 889999999999986 2 5555666799999999987 8898 899999998876543 3334455 3444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 138 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~-~ 198 (398)
T 2rfv_A 138 KPEEIRA-------AMRPETKVVYIETPANPTLSLVDIETVAGIAH-----------QQGALLVVDNTFMSPYCQQPL-Q 198 (398)
T ss_dssp SHHHHHH-------HCCTTEEEEEEESSBTTTTBCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-h
Confidence 4444544 33467999999999999999999999999999 899999999999877643222 3
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+|++|.+ .|+++++++.++ .+++... .+..++.+....+++.
T Consensus 199 ~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~ 255 (398)
T 2rfv_A 199 LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLK-----------------------DITGGCMSPFNAWLTL 255 (398)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHH-----------------------HTTCCCCCHHHHHHHH
T ss_pred hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHH-----------------------hCCCCCCCHHHHHHHH
Confidence 5789999999999987765 499999987764 3322211 1113466666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
++++.+.. .+++..+.++.+.+.|.+.. + ....|+++++.+.. ...+++++|.+++.. . ...
T Consensus 256 ~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~~~g~~~~~~~~~~~-~--~~~ 325 (398)
T 2rfv_A 256 RGVKTLGI---RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQM----SLPGGIISFEIAGGL-E--AGR 325 (398)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHC----SSCCSEEEEEETTHH-H--HHH
T ss_pred hhhhhHHH---HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEEcCCH-H--HHH
Confidence 66654322 22455566667777776641 0 00112233222210 135889999886320 0 112
Q ss_pred HHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
.+.+.+...||.++.|..++. .....+..++.+.+ .. .|...+.||+|++.+++++++++++
T Consensus 326 ~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~-~~--------------~g~~~~~iRls~~~~~~~~~i~~l~ 390 (398)
T 2rfv_A 326 RMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEER-LK--------------AGITDGLIRLSVGLEDPEDIINDLE 390 (398)
T ss_dssp HHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHH-HH--------------TTCCTTEEEEECCSSCHHHHHHHHH
T ss_pred HHHHhCCcceeccCCCCcceeeecccccccccCCHHHH-Hh--------------cCCCCCeEEEEecCCCHHHHHHHHH
Confidence 244445556888888854320 11111111222111 11 1233589999999999999999999
Q ss_pred HHHHHH
Q psy16512 489 SFLNQY 494 (815)
Q Consensus 489 ~~L~~~ 494 (815)
++|+++
T Consensus 391 ~al~~~ 396 (398)
T 2rfv_A 391 HAIRKA 396 (398)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999864
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=230.52 Aligned_cols=322 Identities=11% Similarity=0.063 Sum_probs=205.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|++ + +++++|+++|+.+++.++. ++|| |+++..+|++++. +...+...| .+.++.+
T Consensus 58 ~~~l~~~la~~~g~~--~--~~~~~~gt~a~~~al~~l~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 129 (412)
T 2cb1_A 58 AKALEERLKALEGAL--E--AVVLASGQAATFAALLALL-RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--- 129 (412)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHTTC-CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS---
T ss_pred HHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence 889999999999985 3 8999999999999999986 8898 8999999987665 333345555 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+........
T Consensus 130 -~~~l~~-------~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~-----------~~~~~li~D~~~~~~~~~~~~~~ 190 (412)
T 2cb1_A 130 -PEAVRE-------ALSAKTRAVFVETVANPALLVPDLEALATLAE-----------EAGVALVVDNTFGAAGALCRPLA 190 (412)
T ss_dssp -HHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECGGGTTTTSCCGGG
T ss_pred -HHHHHH-------HhccCCeEEEEeCCCCCCcccccHHHHHHHHH-----------HcCCEEEEECCCccccccCCccc
Confidence 344443 34467999999999999999999999999999 89999999999988722222224
Q ss_pred CCCcEEEEccccccccCCc-ceEEEEeccccc-----ccCcccccCceEEEEecC--CcccccccCccccccCC-CCChh
Q psy16512 263 HQPDFISISFYKMFGYPTG-LGALIVKQKSAH-----VLNKTFYGGGTVKISMAN--ENFHIKKDGLFEKFEDG-TVNYL 333 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G-~G~l~~~~~~~~-----~l~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~g-t~~~~ 333 (815)
.++|+++.|+||++++|.+ +|++++.++... .+.+....+.. ....+ ..+......... ...| ..+..
T Consensus 191 ~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~ 267 (412)
T 2cb1_A 191 WGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQI--PWEALRARCFPERVRTLGL-SLCGMALSPF 267 (412)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC---------HHHHGGGHHHHHHHHHHT-TTTCCCCCHH
T ss_pred cCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccc--hhhccchHHHHHHHHHHHH-HhcCCCCChH
Confidence 5799999999999987866 788888763311 11111111100 00000 000000000000 0012 22323
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecC
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHK 403 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~ 403 (815)
..+.+..+++.+ ....++..++++++.+.|.+. +++. ++.|.....+ ...+++++|.+ +
T Consensus 268 ~a~~~~~~l~~l---~~~~~~~~~~~~~l~~~L~~~------~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~- 336 (412)
T 2cb1_A 268 NAYLLFQGLETV---ALRVARMSETARFLAERLQGH------PKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G- 336 (412)
T ss_dssp HHHHHHHHGGGH---HHHHHHHHHHHHHHHHHHHTC------TTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-
T ss_pred HhHHHHcCCchH---HHHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-
Confidence 332222333322 222366678899999999887 6666 3333210000 13588999998 4
Q ss_pred CCCccCHHHHHHhhhcCCcEeccCc---------cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 404 DGTYYGYSEVQNLANLKKIQLRTGC---------HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 404 ~~~~~~~~~v~~~l~~~gI~v~~g~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
+. ..+.+.+++.||.+ .++ +|...... .++.. .+..+ |...+.||+|
T Consensus 337 ~~-----~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~---~~~~~-~~~~~--------------g~~~~~iR~s 392 (412)
T 2cb1_A 337 DL-----ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHS---RLKEE-ARLQA--------------GVTPGLVRVS 392 (412)
T ss_dssp SH-----HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTT---TSCHH-HHHHT--------------TCCTTEEEEE
T ss_pred CH-----HHHHHHHHhCCeee-ecccCCCcceeecCcccccc---cCCHH-HHHhc--------------CCCCCeEEEE
Confidence 32 24788888999999 874 55433211 12221 11121 2335899999
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy16512 475 YGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~ 493 (815)
++.++++++|++++++|++
T Consensus 393 ~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 393 VGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CCSSCHHHHHHHHHHHHHC
T ss_pred eccCCHHHHHHHHHHHHhh
Confidence 9999999999999999874
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=229.54 Aligned_cols=326 Identities=10% Similarity=0.045 Sum_probs=218.4
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------------CCCCceeEEecCCchhhHH
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------------TDSDHYSVIFTSGATSAIK 138 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------------~~~~~~~iv~t~g~t~al~ 138 (815)
..+++.+.+++.+.+..... . .+..... ..++|+.++++++ +++++ |++|+|+++|+.
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~---~-~y~~~~~----~~~lr~~la~~~~~~~~~~~~~~~~~~~~~--v~~~~g~~~al~ 118 (416)
T 1bw0_A 49 LLTSAAQIKKLKEAIDSQEC---N-GYFPTVG----SPEAREAVATWWRNSFVHKEELKSTIVKDN--VVLCSGGSHGIL 118 (416)
T ss_dssp SCCCHHHHHHHHHHHHTTCS---S-SCCCTTC----CHHHHHHHHHHHHHHHCCSTTTGGGCCGGG--EEEESHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhCCcc---C-CcCCCCC----CHHHHHHHHHHHHhhhcccccCCCCCCcce--EEEeCChHHHHH
Confidence 35667788887776643210 0 0111122 6788999999888 66776 999999999999
Q ss_pred HHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 139 TVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 139 ~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
+++.++. ++|| |++...+|+++.......+... .++.+.+ ..++++.+++++ .++++++++++++|||
T Consensus 119 ~~~~~l~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l-------~~~~~~v~i~~p~npt 190 (416)
T 1bw0_A 119 MAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLK-------DDKTKLLIVTNPSNPC 190 (416)
T ss_dssp HHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHC-------CTTEEEEEEESSCTTT
T ss_pred HHHHHhC-CCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHh-------ccCCeEEEEeCCCCCC
Confidence 9999997 8898 8888888887655444332222 4555443 235666665533 4578999999999999
Q ss_pred ccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CC----CCCCCCCC---CCcEEEEccccccccCC
Q psy16512 215 GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GS----NMLDLKQH---QPDFISISFYKMFGYPT 280 (815)
Q Consensus 215 G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~----~~~dl~~~---~~D~vv~S~~K~~g~p~ 280 (815)
|.++| +++|.++|+ ++|+++|+|++++. +. ...++..+ +.++++.|+||+|+ .+
T Consensus 191 G~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~ 258 (416)
T 1bw0_A 191 GSNFSRKHVEDIVRLAE-----------ELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VP 258 (416)
T ss_dssp CCCCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CG
T ss_pred CcccCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCC-CC
Confidence 99999 667777777 89999999999875 22 12233222 23577889999998 44
Q ss_pred c--ceEEEEecc--cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH--HhhhhhHHH
Q psy16512 281 G--LGALIVKQK--SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM--EKKRKSFTN 354 (815)
Q Consensus 281 G--~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l--~~~~~~~~~ 354 (815)
| +|+++++++ +++.+...... .....++++.....++.++++.. .......++
T Consensus 259 Glr~G~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 317 (416)
T 1bw0_A 259 GWRLGWLLYVDPHGNGPSFLEGLKR---------------------VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAK 317 (416)
T ss_dssp GGCCEEEEEECTTCSCHHHHHHHHH---------------------HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CceEEEEEeeCchhhHHHHHHHHHH---------------------HhccccCCCcHHHHHHHHHHhcccHHHHHHHHHH
Confidence 7 799999874 44333211000 00123466777777777777632 111112277
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCccCHHHHHHhh-hcCCcEeccCccCCc
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYYGYSEVQNLA-NLKKIQLRTGCHCNP 432 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~~~~~v~~~l-~~~gI~v~~g~~~~~ 432 (815)
.+++++++.+.|+++ |++.++.+.. +.++++.++... ....+..++.+.| .++||.+++|..|..
T Consensus 318 ~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~ 384 (416)
T 1bw0_A 318 IEESAMYLYNHIGEC------IGLAPTMPRG-------AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA 384 (416)
T ss_dssp HHHHHHHHHHHHTTS------TTEEECCCCB-------TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC
T ss_pred HHHHHHHHHHHHHhC------CCCcccCCCe-------eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC
Confidence 888899999999887 6888775542 667777775310 0001233466655 689999998764321
Q ss_pred hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 433 GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 433 ~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ .++++++++++.|.+++.+
T Consensus 385 -----------------------------------~~~iRis~~--~~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 385 -----------------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQR 412 (416)
T ss_dssp -----------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 278999996 5899999999999988754
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=233.06 Aligned_cols=295 Identities=11% Similarity=0.076 Sum_probs=203.8
Q ss_pred HHHHHHHHHhHc----CC--CC-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----NT--DS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++++.+++++ |. ++ ++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+
T Consensus 77 ~~~l~~~ia~~~~~~~g~~~~~~~~--v~~t~g~~~a~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T 2x5d_A 77 IPRLRRAISHWYRDRYDVQIDPESE--AIVTIGSKEGLAHLMLATL-DHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLV 153 (412)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTS--EEEESCHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHHHTCEEEEEECS
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcC--EEEcCChHHHHHHHHHHhC-CCCCEEEEcCCCchhHHHHHHHcCCEEEEeecC
Confidence 667888888888 75 44 45 9999999999999999997 8898 8898988887765554433222 55666
Q ss_pred ch-h-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 178 VD-D-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 178 ~~-~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+ + ..+++.+++++ .+++++|++++++||||.++|.+ +|.++|+ ++|+++|+|++++
T Consensus 154 ~~~~~~~d~~~l~~~i-------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~ 215 (412)
T 2x5d_A 154 PGIDFFNELERAIRES-------IPKPRMMILGFPSNPTAQCVELDFFERVVALAK-----------QYDVMVVHDLAYA 215 (412)
T ss_dssp TTSCHHHHHHHHHHTE-------ESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTT
T ss_pred CccCCCCCHHHHHHhc-------ccCceEEEECCCCCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEecccc
Confidence 53 2 24556665533 36789999999999999999865 4566666 8999999999987
Q ss_pred cCC----CCCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 253 CGS----NMLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 253 ~g~----~~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
.+. .+.++.. .+.++++.|+||+|| ++| +|++++++++++.+....
T Consensus 216 ~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~----------------------- 271 (412)
T 2x5d_A 216 DIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYN-MAGWRIGFMVGNPELVSALARIK----------------------- 271 (412)
T ss_dssp TCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCS-CTTSCCEEEEECHHHHHHHHHHH-----------------------
T ss_pred ccccCCCCCCChhhccCccCcEEEEecCccccC-CcccceEEEEcCHHHHHHHHHHH-----------------------
Confidence 643 1223222 356899999999998 557 799999888766553211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
....++.+.++..++.++++........+ ++.+++++++.+.|+++ +++++.+. .+.++++.++
T Consensus 272 -~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-------~g~~~~~~~~ 336 (412)
T 2x5d_A 272 -SYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA-------GWMVENPK-------ASMYVWAKIP 336 (412)
T ss_dssp -HHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCS-------BSSEEEEECC
T ss_pred -hhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEecCCC-------eeeEEEEEcC
Confidence 11234566777777666665322111222 77888889999999876 45544332 1456777775
Q ss_pred cCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.... ..+..++.+.| .++||.+++|..|... ..+++|+|++. +
T Consensus 337 ~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~ 380 (412)
T 2x5d_A 337 EPYA-HLGSLEFAKKLLQDAKVSVSPGIGFGDY---------------------------------GDDHVRFALIE--N 380 (412)
T ss_dssp TTTG-GGCHHHHHHHHHHHHCEECEEGGGGCGG---------------------------------GTTEEEEECCS--C
T ss_pred CccC-CCCHHHHHHHHHHHCCEEEeCchhhCCC---------------------------------CCCeEEEEecC--C
Confidence 3110 00234566666 5679999988765321 03789999996 8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
+++++.+++.|.+++.+
T Consensus 381 ~~~l~~~l~~l~~~l~~ 397 (412)
T 2x5d_A 381 RDRLRQAVRGIKAMFRA 397 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999998755
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=234.73 Aligned_cols=304 Identities=14% Similarity=0.113 Sum_probs=203.9
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ | +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++.+
T Consensus 87 ~~~lr~~la~~l~~~~g~~~~~~~~--v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (425)
T 1vp4_A 87 DPVLKQQILKLLERMYGITGLDEDN--LIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAFRQYLANFVVVPLE 163 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHhccCCCCCCccc--EEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC
Confidence 667888888888 8 55666 9999999999999999997 8898 8888888777654443322222 45555
Q ss_pred chhhhcchhhhhhhhhhhhh-cCCCccEE-EEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 178 VDDARNMLNEFKESQENVEN-MRHSNSLF-VYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~-~~~~t~lv-~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+ .++++.++++++..... ..+++++| ++++++||||.++|.++ |.++|+ ++|+++|+|++++
T Consensus 164 ~~-~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~ 231 (425)
T 1vp4_A 164 DD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAE-----------KYDLFIVEDDPYG 231 (425)
T ss_dssp TT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECSST
T ss_pred CC-CCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEECCCc
Confidence 43 36777776655311000 01257887 58999999999999665 555666 8999999999987
Q ss_pred cCC----CCCCCC---CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 253 CGS----NMLDLK---QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 253 ~g~----~~~dl~---~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
... .+.++. ..+.++++.|+||+|+ | | +|++++++++++.+....
T Consensus 232 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~l~~~~------------------------ 285 (425)
T 1vp4_A 232 ALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAK------------------------ 285 (425)
T ss_dssp TCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHH------------------------
T ss_pred cccCCCCCCcCHHHhCCCCCEEEEeccccccc-c-ccceEEEeeCHHHHHHHHHHh------------------------
Confidence 632 122221 2245788999999999 6 6 699999987766553221
Q ss_pred cccCCCCChhHHHHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEE
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTM--EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l--~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~ 400 (815)
.....+.+.++..++.++++.. ...-.. .++..++++++.+.|+++. .+.++++++.+.. +.++++.+
T Consensus 286 ~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~g~~~~~~~~-------g~~~~~~~ 356 (425)
T 1vp4_A 286 QSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYF--SDIPGVKWVKSEG-------GLFIWLTL 356 (425)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHS--TTSTTCEECCCSB-------SSEEEEEC
T ss_pred hhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCceEEecCCc-------cEEEEEEc
Confidence 0111244666777776776652 221122 2677788888999887641 0001577765432 67888888
Q ss_pred ec-CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 401 LH-KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 401 ~~-~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+. .+... +.+.|.++||.+++|..|.... ...+++|||++..
T Consensus 357 ~~~~~~~~-----l~~~l~~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~- 399 (425)
T 1vp4_A 357 PEGFDTWE-----MFEYAKRKKVFYVPGRVFKVYD-------------------------------EPSPSMRLSFCLP- 399 (425)
T ss_dssp CTTCCTTT-----THHHHHHHTEECEEGGGGCTTC-------------------------------CCCSEEEEECSSS-
T ss_pred CCCCCHHH-----HHHHHHHCCCEEECchhhcCCC-------------------------------CCCCeEEEEeCCC-
Confidence 63 23332 6667767799999886543210 1137899999975
Q ss_pred CHHHHHHHHHHHHHHHhh
Q psy16512 480 NWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~~ 497 (815)
+++++++++++|++++.+
T Consensus 400 ~~e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 400 PDEKIVEGIKRLREVVLE 417 (425)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999987653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=226.74 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=211.3
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHH-HHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQ-MRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~-~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.++.+.+++.+.+.......+.. ..+ +|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 42 ~~~~v~~a~~~~~~~~~~~y~~~-----------~~~~lr~~la~~l~~~~g~~~~~~~--v~~t~g~~~al~~~~~~l~ 108 (390)
T 1d2f_A 42 TAPCIIEALNQRLMHGVFGYSRW-----------KNDEFLAAIAHWFSTQHYTAIDSQT--VVYGPSVIYMVSELIRQWS 108 (390)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCS-----------CCHHHHHHHHHHHHHHSCCCCCGGG--EEEESCHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCC-----------ChHHHHHHHHHHHHHhcCCCCCHHH--EEEcCCHHHHHHHHHHHhc
Confidence 56777887777664322222221 223 566666654 6 66666 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC-
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP- 219 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~- 219 (815)
++|| |++..+.|+++.......+... .++.+.++ ..+++.++++++ ..++++|++++++||||.++|
T Consensus 109 -~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~l~~p~nptG~~~~~ 181 (390)
T 1d2f_A 109 -ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA------KPECKIMLLCSPQNPTGKVWTC 181 (390)
T ss_dssp -CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHT------STTEEEEEEESSCTTTCCCCCT
T ss_pred -CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhc------cCCCeEEEEeCCCCCCCcCcCH
Confidence 8898 8888888877655444332222 45554432 256666665442 236899999999999999999
Q ss_pred --hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCCC---cEEEEccccccccCCc--ceEEEEe
Q psy16512 220 --LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQP---DFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 --l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~~---D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
+++|.++|+ ++|+++|+|++++... ...++..+.. |. +.|+||+|| ++| +|+++++
T Consensus 182 ~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~-~~G~r~G~~~~~ 248 (390)
T 1d2f_A 182 DELEIMADLCE-----------RHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN-IPALTGAYGIIE 248 (390)
T ss_dssp THHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT-CGGGCCEEEEEC
T ss_pred HHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc-ccChhheEEEEC
Confidence 556677777 8999999999987632 2233333322 67 999999998 557 6999996
Q ss_pred -cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHH
Q psy16512 289 -QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYF 366 (815)
Q Consensus 289 -~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L 366 (815)
+++.+.+.....+ ....++.+..+..++.++++.....-.. .++..++++++.+.|
T Consensus 249 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 306 (390)
T 1d2f_A 249 NSSSRDAYLSALKG----------------------RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKM 306 (390)
T ss_dssp SHHHHHHHHHHHHT----------------------TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh----------------------hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544322110 1122467777777777777642222122 277888889999999
Q ss_pred Hh-ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 367 KQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 367 ~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
++ + |+++++.+.. +.++++.++... ++..++.+.|. ++||.+++|..|.+.
T Consensus 307 ~~~~------~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~l~~~l~~~~gi~v~~g~~f~~~----------- 359 (390)
T 1d2f_A 307 NAAF------PELNWQIPQS-------TYLAWLDLRPLN---IDDNALQKALIEQEKVAIMPGYTYGEE----------- 359 (390)
T ss_dssp HHHC------SSCCCCCCSB-------CSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCGG-----------
T ss_pred HhhC------CCCEEecCCc-------cEEEEEEccccC---CCHHHHHHHHHHHcCEEeeCccccCCC-----------
Confidence 87 6 5666554331 344567775420 22345777776 789999988765421
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++|||++. ++++++.+++.|.+++.+
T Consensus 360 ----------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 360 ----------------------GRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp ----------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 03789999996 588999999999987643
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.1e-23 Score=227.96 Aligned_cols=292 Identities=12% Similarity=0.072 Sum_probs=202.4
Q ss_pred HHHHHHHHHhHc----CCC--C-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----NTD--S-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g~~--~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.+++++ |++ + ++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+
T Consensus 87 ~~~lr~~ia~~~~~~~g~~~~~~~~--v~~t~G~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~ 163 (404)
T 2o1b_A 87 KEAFKQAIVDFYQRQYNVTLDKEDE--VCILYGTKNGLVAVPTCVI-NPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE 163 (404)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTS--EEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCCccc--EEEcCCcHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC
Confidence 567888888887 865 2 45 9999999999999999997 8898 8888888887765544433222 55665
Q ss_pred chh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 178 VDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 178 ~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.++ ..+++.++++++ +++++|++++++||||.++|.++ |.++|+ ++|+++|+|++++.
T Consensus 164 ~~~~~~d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~ 225 (404)
T 2o1b_A 164 PPHYLPDWSKVDSQII-------DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFK-----------GTDTKIVHDFAYGA 225 (404)
T ss_dssp TTTCCCCGGGSCHHHH-------HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHT-----------TSSCEEEEECTTTT
T ss_pred cccCcCCHHHHHHhhc-------cCceEEEEcCCCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEccchh
Confidence 433 256666665442 46899999999999999998655 555565 89999999999876
Q ss_pred CC---CCCCCCCC----CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 254 GS---NMLDLKQH----QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 254 g~---~~~dl~~~----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
.. .+.++..+ +.++++.|+||+|| ++| +|++++++++++.+.... .
T Consensus 226 ~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~l~~~~------------------------~ 280 (404)
T 2o1b_A 226 FGFDAKNPSILASENGKDVAIEIYSLSKGYN-MSGFRVGFAVGNKDMIQALKKYQ------------------------T 280 (404)
T ss_dssp CBSSSCCCCGGGSTTHHHHEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH------------------------H
T ss_pred cccCCCCCChhhcCCCCCCEEEEEecchhcc-CchhheEeEecCHHHHHHHHHHH------------------------h
Confidence 43 22233222 35789999999998 446 799999888776553221 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
...++.+.....++.++++.... .....++.+++++++.+.|+++ +++++.+.. +.++++.++..
T Consensus 281 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~ 346 (404)
T 2o1b_A 281 HTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA-------DLPFVHAKG-------GIYVWLETPPG 346 (404)
T ss_dssp HHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEECCCB-------SSEEEEECCTT
T ss_pred hccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-------CCeecCCCc-------ceEEEEeCCCC
Confidence 12235667777777677665221 2112277788889999999876 455554431 44577777521
Q ss_pred CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 ~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
++..++.+.| +++||.+++|..|... ..+++|+|++. +++
T Consensus 347 ----~~~~~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRis~~~--~~e 387 (404)
T 2o1b_A 347 ----YDSEQFEQFLVQEKSILVAPGKPFGEN---------------------------------GNRYVRISLAL--DDQ 387 (404)
T ss_dssp ----CCHHHHHHHHHHHHCEECEESGGGCGG---------------------------------GTTEEEEECCS--CTT
T ss_pred ----CCHHHHHHHHHHHCCEEEeCchhhCcC---------------------------------CCCeEEEEEcC--CHH
Confidence 2233566665 4789999988765421 03789999996 688
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
+++++++.|.+++.+
T Consensus 388 ~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 388 KLDEAAIRLTELAYL 402 (404)
T ss_dssp HHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887643
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=232.35 Aligned_cols=318 Identities=12% Similarity=0.077 Sum_probs=208.3
Q ss_pred cchhhHHHHHHHHhhc----cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHh
Q psy16512 73 YSQSQMNQTIEQLKEN----IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~----~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.++.+.+++.+.+... ....+. ... ..++++.+++++ | +++++ |++|+|+++|+.+++.
T Consensus 49 ~~~~v~~a~~~~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~l~~~~g~~~~~~~--i~~~~g~~~al~~~~~ 117 (398)
T 3ele_A 49 APQIVNDTIKELVTDYDSVALHGYTS-----AQG----DVETRAAIAEFLNNTHGTHFNADN--LYMTMGAAASLSICFR 117 (398)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCccccCCcCC-----CCC----cHHHHHHHHHHHHHHhCCCCChHH--EEEccCHHHHHHHHHH
Confidence 4567777776665431 111111 111 355666666654 4 56666 9999999999999999
Q ss_pred hhccCCC-c-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 143 YFEFNEG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 143 al~~~~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
++. ++| | |++..+.|+++....+..+... .++++.+ ..++++.+++++ .+++++|++++++||||.++
T Consensus 118 ~l~-~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~~p~nptG~~~ 189 (398)
T 3ele_A 118 ALT-SDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERI-------NAHTRGVIINSPNNPSGTVY 189 (398)
T ss_dssp HHC-CSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTC-------CTTEEEEEECSSCTTTCCCC
T ss_pred HHc-CCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHh-------CcCCCEEEEcCCCCCCCCCC
Confidence 997 899 8 8888888877655444332222 4555543 256777766543 46799999999999999999
Q ss_pred ChHHHHHHhhccccccccccCC------CCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCc--ceEE
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSR------SNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~------~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l 285 (815)
|.+++.++++ .|++ +|+++|+|++++... .+......+.++++.|+||+|| ++| +|++
T Consensus 190 ~~~~l~~l~~--------~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~ 260 (398)
T 3ele_A 190 SEETIKKLSD--------LLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLS-LPGERIGYV 260 (398)
T ss_dssp CHHHHHHHHH--------HHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSS-CTTTCCEEE
T ss_pred CHHHHHHHHH--------HHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCC-CccceeEEE
Confidence 9666554433 2226 899999999987522 1222233456789999999998 446 8999
Q ss_pred EEecccccc--cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy16512 286 IVKQKSAHV--LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~--l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~ 363 (815)
+++++..+. +...+.. ........+.+.....++..+++ . ....+++.++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~a~~~~l~---~-~~~~~~~~~~~~~l~ 317 (398)
T 3ele_A 261 LVPDEVYDKAELYAAVCG-------------------AGRALGYVCAPSLFQKMIVKCQG---A-TGDINAYKENRDLLY 317 (398)
T ss_dssp ECCTTSTTHHHHHHHHHH-------------------HHHHTTCCCSCHHHHHHHTTCTT---C-CCCHHHHHHHHHHHH
T ss_pred EEcchhhhHHHHHHHHHH-------------------HhhhccccCCCHHHHHHHHHHhc---C-HHHHHHHHHHHHHHH
Confidence 998876532 1000000 00011122344444444433332 1 123478888999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ +++++.+.. +.++++.++..+ ..++.+.|.++||.+++|..|..
T Consensus 318 ~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~g~~~~~----------- 367 (398)
T 3ele_A 318 EGLTRI-------GYHCFKPDG-------AFYMFVKALEDD-----SNAFCEKAKEEDVLIVAADGFGC----------- 367 (398)
T ss_dssp HHHHHH-------TCCEECCSB-------SSEEEEECSSSC-----HHHHHHHHHTTTEECEESGGGTC-----------
T ss_pred HHHHHc-------CCeecCCCe-------eEEEEEEcCCCC-----HHHHHHHHHHCCEEEeCccccCC-----------
Confidence 999887 566665432 455777765432 34577888999999998865431
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ ++++++++++++|.+++.+
T Consensus 368 ------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~ 395 (398)
T 3ele_A 368 ------------------------PGWVRISYC--VDREMIKHSMPAFEKIYKK 395 (398)
T ss_dssp ------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 278999997 6999999999999997753
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=223.61 Aligned_cols=291 Identities=11% Similarity=0.126 Sum_probs=207.2
Q ss_pred HHHHHHHHHhHc-CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhh--
Q psy16512 107 IDQMRTKILQYF-NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDA-- 181 (815)
Q Consensus 107 ~~~~r~~la~~~-g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~-- 181 (815)
..++++.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++++.++.
T Consensus 65 ~~~l~~~la~~~~~~~~~~--v~~~~g~~~a~~~~~~~l~-~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 141 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPEQ--ILQTNGATGANLLVLYSLI-EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWL 141 (375)
T ss_dssp CHHHHHHHHTTSSSCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGGGTTE
T ss_pred hHHHHHHHHHHhccCChhh--EEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCCCC
Confidence 678999999998 567776 9999999999999999997 8999 8888888887765544433222 555554333
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM- 257 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~- 257 (815)
++++.+++++ .+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++.....
T Consensus 142 ~d~~~l~~~l-------~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~-----------~~~~~li~De~~~~~~~~~ 203 (375)
T 3op7_A 142 PDLEKLRQLI-------RPTTKMICINNANNPTGAVMDRTYLEELVEIAS-----------EVGAYILSDEVYRSFSELD 203 (375)
T ss_dssp ECHHHHHHHC-------CTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------TTTCEEEEECCSCCCSSSC
T ss_pred CCHHHHHHhh-------ccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHH-----------HcCCEEEEEcccccccccC
Confidence 5666666543 468999999999999999999 777888888 999999999998754321
Q ss_pred -CC-CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 258 -LD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 258 -~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.. ....+.++++.|++|.+| ++| +|++++++++++.++... .....+.+..
T Consensus 204 ~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~v~~~~~l~~~~~~~~------------------------~~~~~~~~~~ 258 (375)
T 3op7_A 204 VPSIIEVYDKGIAVNSLSKTYS-LPGIRIGWVAANHQVTDILRDYR------------------------DYTMICAGVF 258 (375)
T ss_dssp CCCHHHHCTTEEEEEESSSSSS-CGGGCCEEEECCHHHHHHHTTTG------------------------GGTTSCCCHH
T ss_pred CCchhhhcCCEEEEeEChhhcC-CcccceEEEEeCHHHHHHHHHHH------------------------hhhccCCCcH
Confidence 11 112345688999999998 446 699999888776664322 1122344556
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 334 AIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
...++..+++......... ++..++++++.+.|++. +++.+..+.. +.++.+.++.. .+..+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~-------~~~~~~~~~~~----~~~~~ 321 (375)
T 3op7_A 259 DDLVAQLALAHYQEILERNRHILEENLAILDQWIEEE------PLVSYIRPAV-------VSTSFVKIAVD----MPMED 321 (375)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECCCSS-------SSCEEEEECCS----SCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhC------CCceEecCCC-------eEEEeEEcCCC----CCHHH
Confidence 6666666666544332233 66688888899999887 6888776543 44555555432 12234
Q ss_pred HHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 413 VQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 413 v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
+.+.+ .++||.+++|..|.. .+++|++++. +.+++++++++|
T Consensus 322 ~~~~ll~~~gi~v~~g~~~~~-----------------------------------~~~iRi~~~~--~~~~i~~~l~~l 364 (375)
T 3op7_A 322 FCLQLLQEHGVLLVPGNRFER-----------------------------------DGYVRLGFAC--EQETLIKGLEKL 364 (375)
T ss_dssp HHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEECCCS--CHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeChhhhCC-----------------------------------CCeEEEEecC--CHHHHHHHHHHH
Confidence 55555 789999988754321 2789999885 458999999999
Q ss_pred HHHHhh
Q psy16512 492 NQYFLQ 497 (815)
Q Consensus 492 ~~~~~~ 497 (815)
.+++.+
T Consensus 365 ~~~l~~ 370 (375)
T 3op7_A 365 SQFLRR 370 (375)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 998754
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.2e-23 Score=231.11 Aligned_cols=336 Identities=11% Similarity=0.002 Sum_probs=221.4
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhc---cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCC-ceeEEec
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKEN---IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSD-HYSVIFT 130 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~---~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~-~~~iv~t 130 (815)
.++|+.+... ..++.+.+++.+.+... ....+. ... ..++++.+++++ | ++++ + |++|
T Consensus 39 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~l~~~~g~~~~~~~~--v~~~ 107 (429)
T 1yiz_A 39 PLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTR-----GFG----HPRLVQALSKLYSQLVDRTINPMTE--VLVT 107 (429)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCC-----SSC----CHHHHHHHHHHHHHHHTSCCCTTTS--EEEE
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCC-----CCC----cHHHHHHHHHHHHHHhCCCCCCcCC--EEEe
Confidence 4566665443 35577777777766431 111111 112 456667777665 7 4555 6 9999
Q ss_pred CCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch----------hhhcchhhhhhhhhhhhhc
Q psy16512 131 SGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD----------DARNMLNEFKESQENVENM 198 (815)
Q Consensus 131 ~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~----------~~~~~~~~~~~l~~~~~~~ 198 (815)
+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.+ ...+++.++++ +
T Consensus 108 ~g~~~a~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~-------l 179 (429)
T 1yiz_A 108 VGAYEALYATIQGHV-DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEAL-------F 179 (429)
T ss_dssp SHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHH-------C
T ss_pred cChHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHHH-------h
Confidence 999999999999997 8898 8888888887665544332222 5565543 23566666553 3
Q ss_pred CCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCC---CC-CCCCcE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLD---LK-QHQPDF 267 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~d---l~-~~~~D~ 267 (815)
.+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++.. ..... +. ..+.|+
T Consensus 180 ~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 248 (429)
T 1yiz_A 180 NEKTKMIIINTPHNPLGKVMDRAELEVVANLCK-----------KWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI 248 (429)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEE
T ss_pred ccCceEEEECCCCCCCCccCCHHHHHHHHHHHH-----------HcCcEEEEeccccccccCCCCCcChhhccCCcCceE
Confidence 467899999999999999997 666677777 899999999998742 11112 21 345789
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT- 344 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~- 344 (815)
++.|+||+|| ++| +|++++++++++.+.... ....++.+.+...++.++++.
T Consensus 249 ~~~s~sK~~~-~~G~r~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 303 (429)
T 1yiz_A 249 TIGSAGKTFS-LTGWKIGWAYGPEALLKNLQMVH------------------------QNCVYTCATPIQEAIAVGFETE 303 (429)
T ss_dssp EEEEHHHHHT-CGGGCCEEEESCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEecchhccC-CCCcceEEEEeCHHHHHHHHHHH------------------------hhcccCCChHHHHHHHHHHhcc
Confidence 9999999999 668 899999887766553211 122345666777777777765
Q ss_pred ----H--HhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--------CccC
Q psy16512 345 ----M--EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--------TYYG 409 (815)
Q Consensus 345 ----l--~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--------~~~~ 409 (815)
. ...-... ++.+++++++.+.|+++ +++++.+.. +.++++.++.... ...+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 369 (429)
T 1yiz_A 304 LKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG-------GYFMVADWSSLDSKVDLTQETDARK 369 (429)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-------TCEEEECSB-------SSEEEEECCSSCTTTTCCSSSSSCH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhC-------CCcccCCCc-------ceEEEEEcccccccccccccccCCC
Confidence 2 1111122 77788888999999876 566654432 5678888764210 0012
Q ss_pred HHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 410 YSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 410 ~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
..++.+.| .++||.+++|..|...... +...+++|+|++ ++++++++++
T Consensus 370 ~~~l~~~l~~~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~--~~~e~i~~~l 419 (429)
T 1yiz_A 370 DYRFTKWMTKSVGLQGIPPSAFYSEPNK----------------------------HLGEDFVRYCFF--KKDENLQKAA 419 (429)
T ss_dssp HHHHHHHHHHHTSEECBCGGGGSCGGGG----------------------------GGTTTEEEEECC--SCHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEeCchHhCCCccc----------------------------CCCCCeEEEEec--CCHHHHHHHH
Confidence 33566655 5899999988654321100 001378999998 4899999999
Q ss_pred HHHHHHHh
Q psy16512 489 SFLNQYFL 496 (815)
Q Consensus 489 ~~L~~~~~ 496 (815)
++|++++.
T Consensus 420 ~~l~~~l~ 427 (429)
T 1yiz_A 420 EILRKWKG 427 (429)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcc
Confidence 99998753
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=233.82 Aligned_cols=297 Identities=14% Similarity=0.100 Sum_probs=203.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
..++|+.+++++|+++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.++ +++
T Consensus 76 ~~~l~~~la~~~g~~~~~--v~~~~g~~~al~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~ 151 (397)
T 2zyj_A 76 YAPLRAFVAEWIGVRPEE--VLITTGSQQALDLVGKVFL-DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDL 151 (397)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECH
T ss_pred CHHHHHHHHHHhCCChhh--EEEeccHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCH
Confidence 678999999999987776 9999999999999999997 8898 8888878777654433322111 45554433 666
Q ss_pred hhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccCC----C
Q psy16512 185 LNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----N 256 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~ 256 (815)
+.++++++ ..++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++... .
T Consensus 152 ~~l~~~l~------~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~g~~ 214 (397)
T 2zyj_A 152 DALEEVLK------RERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVM-----------ERGLVVVEDDAYRELYFGEAR 214 (397)
T ss_dssp HHHHHHHH------HCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHH-----------HHTCCEEEECTTTTCBCSSCC
T ss_pred HHHHHHHh------hcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEeCCcccccCCCCC
Confidence 66666443 1257887 5799999999999977 5666666 8999999999988643 2
Q ss_pred CCCCCCCC------CcEEEEccccccccCC-cceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 257 MLDLKQHQ------PDFISISFYKMFGYPT-GLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 257 ~~dl~~~~------~D~vv~S~~K~~g~p~-G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
+.++..++ ..+++.|+||+|+ |. ++|++++++++++.+..... .+..++
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~-----------------------~~~~~~ 270 (397)
T 2zyj_A 215 LPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQ-----------------------GADLHT 270 (397)
T ss_dssp CCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHHHHHHHHHHH-----------------------HHHSSC
T ss_pred CCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHHHHHHHHHHH-----------------------hhcCCC
Confidence 23332232 3388899999999 62 37999999877665532210 111223
Q ss_pred CChhHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 VNYLAIISLKYGFDTME--KKRKSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~--~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
+..+..++.++++... ......++..++++++.+.|++.. | ++++..+.. +.++++.++..
T Consensus 271 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~~~~-------g~~~~~~~~~~--- 334 (397)
T 2zyj_A 271 -PMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREV-----PKEVRYTRPKG-------GMFVWMELPKG--- 334 (397)
T ss_dssp -CHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTTSEECCCSB-------SSEEEEECSTT---
T ss_pred -CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEccCCc-------cEEEEEEcCCC---
Confidence 5566666656654321 111112677788888888887631 4 467665432 67778877531
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+.|.++||.+++|..|.... ...+++|+|++.. +++++++
T Consensus 335 -~~~~~~~~~l~~~gi~v~~g~~f~~~~-------------------------------~~~~~iRis~~~~-~~~~i~~ 381 (397)
T 2zyj_A 335 -LSAEGLFRRALEENVAFVPGGPFFANG-------------------------------GGENTLRLSYATL-DREGIAE 381 (397)
T ss_dssp -CCHHHHHHHHHHTTEEEEESGGGCTTS-------------------------------CCTTEEEEECSSS-CHHHHHH
T ss_pred -CCHHHHHHHHHHCCCEEechHHhcCCC-------------------------------CCCCeEEEEcCCC-CHHHHHH
Confidence 233457888888899999886543210 1137899999976 8999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|.+++.+
T Consensus 382 ~~~~l~~~l~~ 392 (397)
T 2zyj_A 382 GVRRLGRALKG 392 (397)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987743
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=233.97 Aligned_cols=325 Identities=10% Similarity=0.043 Sum_probs=214.7
Q ss_pred cchhhHHHHHHHHhhcc--ccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCC-CceeEEecCCchhhHHHHHhh
Q psy16512 73 YSQSQMNQTIEQLKENI--FSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDS-DHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~--~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~-~~~~iv~t~g~t~al~~~~~a 143 (815)
+++.+.+++.+.+.... ...+. ... ..++|+.++++++ +++ ++ |++|+|+++|+.+++.+
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~y~~-----~~g----~~~lr~~la~~~~~~~g~~~~~~~~--i~~~~g~~~a~~~~~~~ 110 (422)
T 3fvs_A 42 PPDFAVEAFQHAVSGDFMLNQYTK-----TFG----YPPLTKILASFFGELLGQEIDPLRN--VLVTVGGYGALFTAFQA 110 (422)
T ss_dssp CCHHHHHHHHHHHHSCGGGGSCCC-----TTC----CHHHHHHHHHHHHHHHTCCCCHHHH--EEEESHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCccCCCCC-----CCC----CHHHHHHHHHHHHHhhCCCCCCCCc--EEEECChHHHHHHHHHH
Confidence 56777777777665321 11111 111 4556666666654 444 45 99999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc----h--------hhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV----D--------DARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~----~--------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+. ++|| |++....|+++.......+... .++++. + ..++++.++++ +.+++++|++++
T Consensus 111 ~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~-------~~~~~~~v~~~~ 182 (422)
T 3fvs_A 111 LV-DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGK-------FTSRTKALVLNT 182 (422)
T ss_dssp HC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTT-------CCTTEEEEEEES
T ss_pred Hc-CCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhh-------cCCCceEEEECC
Confidence 97 8999 8888888887665554443322 556654 1 13455555553 346799999999
Q ss_pred ccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc----CCCCCCCCCC----CCcEEEEcccccccc
Q psy16512 210 ESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----GSNMLDLKQH----QPDFISISFYKMFGY 278 (815)
Q Consensus 210 ~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g~~~~dl~~~----~~D~vv~S~~K~~g~ 278 (815)
++||||.++| +++|.++|+ ++|+++|+|++++. +..+.++..+ +.++++.|+||.||
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g- 250 (422)
T 3fvs_A 183 PNNPLGKVFSREELELVASLCQ-----------QHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFS- 250 (422)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHT-
T ss_pred CCCCCCcCCCHHHHHHHHHHHH-----------HcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccC-
Confidence 9999999996 555666676 89999999999875 2222233222 34588999999998
Q ss_pred CCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------Hhhh
Q psy16512 279 PTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKR 349 (815)
Q Consensus 279 p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~ 349 (815)
++| +|++++++++++.+.... ....++.+.....++.++++.. ....
T Consensus 251 ~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 306 (422)
T 3fvs_A 251 ATGWKVGWVLGPDHIMKHLRTVH------------------------QNSVFHCPTQSQAAVAESFEREQLLFRQPSSYF 306 (422)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHH
T ss_pred CccceEEEEEeCHHHHHHHHHHH------------------------hhccCCCCcHHHHHHHHHHhhccccccchHHHH
Confidence 556 899999887765542211 1123356667777777777641 1111
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---C------CccCHHHHHH-hhh
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---G------TYYGYSEVQN-LAN 418 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~------~~~~~~~v~~-~l~ 418 (815)
... ++..++++++.+.|+++ +++++.+.. +.++++.+.... . ......++.+ ++.
T Consensus 307 ~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 372 (422)
T 3fvs_A 307 VQFPQAMQRCRDHMIRSLQSV-------GLKPIIPQG-------SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIK 372 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB-------SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-------CCeecCCCe-------eeEEEEechhhcccccccccccccccHHHHHHHHHH
Confidence 122 78888899999999886 677665543 667777665310 0 0000123444 467
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++||.+.+|..|...... ....+++|+|++. +++++++++++|++++.
T Consensus 373 ~~gv~v~~g~~f~~~~~~----------------------------~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~ 420 (422)
T 3fvs_A 373 NKGLVAIPVSIFYSVPHQ----------------------------KHFDHYIRFCFVK--DEATLQAMDEKLRKWKV 420 (422)
T ss_dssp HHCEECEEGGGGSCHHHH----------------------------TTSCSEEEEECCC--CHHHHHHHHHHHHHHHH
T ss_pred hcCEEEeCcHHhcCCcCC----------------------------CCCCCeEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 789999999876543211 0114899999986 99999999999998764
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=225.64 Aligned_cols=340 Identities=12% Similarity=0.020 Sum_probs=211.9
Q ss_pred hhhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH--cC-CCCCceeEEecCCchhhH
Q psy16512 62 ICYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY--FN-TDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~--~g-~~~~~~~iv~t~g~t~al 137 (815)
.++|+.+... ..++.+.+++.+.+...........+..... ..++|+.++++ +| +++++ |++|+|+++++
T Consensus 35 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~lr~~la~~l~~g~~~~~~--v~~~~G~~~al 108 (400)
T 3asa_A 35 VINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFG----LPALRQKLSEDFYRGFVDAKE--IFISDGAKVDL 108 (400)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTC----CHHHHHHHHHTTSTTSSCGGG--EEEESCHHHHH
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCC----CHHHHHHHHHHHHcCCCCHHH--EEEccChHHHH
Confidence 3555555443 4566777777666543210000001111223 67899999999 57 66766 99999999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc-c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN-Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~-g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
.+++..+ .+|| |++..+.|+++.......+.. . .++.+.++.+..+ +++ .+++++|++++++|||
T Consensus 109 ~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~---------~~~~~~v~l~~p~npt 176 (400)
T 3asa_A 109 FRLLSFF--GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE---------DTHIDILCLCSPNNPT 176 (400)
T ss_dssp HHHHHHH--CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT---------TCCCSEEEEESSCTTT
T ss_pred HHHHHHc--CCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh---------ccCccEEEEeCCCCCC
Confidence 9876543 7888 888888888776555554444 3 5566544333322 211 1468999999999999
Q ss_pred ccccChHHHHHHhhccccccccccCCCCeEEEEecccc-c---CCCCCCCCCCC----CcEEEEccccccccCCc--ceE
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C---GSNMLDLKQHQ----PDFISISFYKMFGYPTG--LGA 284 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~---g~~~~dl~~~~----~D~vv~S~~K~~g~p~G--~G~ 284 (815)
|.++|.+++.++++ .|+++|+++|+|++++ + +..+.++..++ .++++.|++|+|| ++| +|+
T Consensus 177 G~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~GlriG~ 247 (400)
T 3asa_A 177 GTVLNKDQLRAIVH--------YAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLG-FAGIRLGW 247 (400)
T ss_dssp CCCCCHHHHHHHHH--------HHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGT-TTTCCCEE
T ss_pred CCcCCHHHHHHHHH--------HHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcC-CcchheeE
Confidence 99999766444433 2228999999999987 3 22223333332 3588999999998 567 799
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYF 364 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~ 364 (815)
+++++++.+... ... .... ........++.+.++..++..+++.. ......++++++++++.+
T Consensus 248 ~~~~~~~~~~~~-----~~~-------~~~~----~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~l~~ 310 (400)
T 3asa_A 248 TVIPQELTYADG-----HFV-------IQDW----ERFLSTTFNGASIPAQEAGVAGLSIL-PQLEAIHYYRENSDLLRK 310 (400)
T ss_dssp EECCTTCBCTTS-----CBH-------HHHH----HHHHHHHCCCCCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred EeeChhhccchh-----hhH-------HHHH----HHHhccCccCCChHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 999887732110 000 0000 00011123466777777776666543 221223788889999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEE-Eec-CCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCC
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFN-LLH-KDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGL 441 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~-~~~-~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~ 441 (815)
.|+++ +++++.+.. ++++++. ++. .+... +.+.| +++||.+++|..|.+..
T Consensus 311 ~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~-----~~~~l~~~~gv~v~~g~~f~~~~------- 364 (400)
T 3asa_A 311 ALLAT-------GFEVFGGEH-------APYLWVKPTQANISDRD-----LFDFFLREYHIAITPGIGFGRSG------- 364 (400)
T ss_dssp HHHHT-------TCEEEECSS-------SSEEEEECCCTTCCTTT-----HHHHHHHHHSEECEEGGGGCGGG-------
T ss_pred HHHHC-------CCeeeCCCC-------ceEEEEeccCCCCCHHH-----HHHHHHHhCCEEEeChhHhCCCC-------
Confidence 99886 566664432 6778887 653 22222 44444 56799999887654210
Q ss_pred CHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 442 SDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 442 ~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
.+++|+|+ +++++++++++++|++++..-+
T Consensus 365 --------------------------~~~iRis~--~~~~e~i~~~l~~l~~~~~~~~ 394 (400)
T 3asa_A 365 --------------------------SGFVRFSS--LGKREDILAACERLQMAPALQS 394 (400)
T ss_dssp --------------------------TTCEEEEC--CSCHHHHHHHHHHHHC------
T ss_pred --------------------------CCEEEEEe--eCCHHHHHHHHHHHHHHHHhhh
Confidence 27899994 5799999999999998775443
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=229.61 Aligned_cols=328 Identities=12% Similarity=0.075 Sum_probs=215.5
Q ss_pred hhhhhhccc-ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCceeEEecCCchhhH
Q psy16512 63 CYLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 63 iyLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~~~iv~t~g~t~al 137 (815)
+.|..+... ..++.+.+++.+.+......+....+..... ..++++.+++++ ++++++ |++|+|+++++
T Consensus 59 i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g----~~~l~~~ia~~~~~~~~~~~~~--i~~t~G~~~al 132 (432)
T 3ei9_A 59 ISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQG----AKPLRAAIAKTFYGGLGIGDDD--VFVSDGAKCDI 132 (432)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTC----CHHHHHHHHHHHHTTTTCCGGG--EEEESCHHHHH
T ss_pred EEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC----CHHHHHHHHHHHHccCCCCcce--EEECCChHHHH
Confidence 445444333 4567788888776653211111111222223 678888888886 777776 99999999999
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhcc------------c-eEEcCchhhhcchhhhhhhhhhhhhcCCCcc
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTN------------Q-IYSFSVDDARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~------------g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
.++ .++. ++|| |++..++|+++......++.. . .++++.++.+..+ +++ .++++
T Consensus 133 ~~l-~~l~-~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~---------~~~~~ 200 (432)
T 3ei9_A 133 SRL-QVMF-GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD-LST---------VGRTD 200 (432)
T ss_dssp HHH-HHHH-CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC-GGG---------CCCCS
T ss_pred HHH-HHHc-CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC-hhh---------CCCCC
Confidence 875 6666 8998 999999999988777766642 2 5555544322222 211 25689
Q ss_pred EEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC----CCCcEEEEcccccc
Q psy16512 204 LFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ----HQPDFISISFYKMF 276 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~----~~~D~vv~S~~K~~ 276 (815)
+|++++++||||.++|.+++.++++ .|+++|+++|+|++|+... .+..+.. .+.++++.|+||+|
T Consensus 201 ~v~l~~p~NPtG~~~~~~~l~~l~~--------la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 272 (432)
T 3ei9_A 201 IIFFCSPNNPTGAAATREQLTQLVE--------FAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYA 272 (432)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHH
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHH--------HHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhcc
Confidence 9999999999999999777666644 2338999999999988432 2222221 23568999999999
Q ss_pred ccCCc--ceEEEEecccc--------cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH--
Q psy16512 277 GYPTG--LGALIVKQKSA--------HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-- 344 (815)
Q Consensus 277 g~p~G--~G~l~~~~~~~--------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-- 344 (815)
| ++| +|+++++++.+ +.+... .....++.+.++..++.+++..
T Consensus 273 g-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~ 327 (432)
T 3ei9_A 273 G-FTGVRLGWTVIPKKLLYSDGFPVAKDFNRI------------------------ICTCFNGASNISQAGALACLTPEG 327 (432)
T ss_dssp C-TTTTCCEEEECCTTCBCTTSCBHHHHHHHH------------------------HHHSCCCSCHHHHHHHHHHSSHHH
T ss_pred C-CcccceEEEEEChHHhhcchHHHHHHHHHH------------------------hccccCCCCHHHHHHHHHHHhccc
Confidence 9 557 79999988773 211110 0122345666767666666532
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcE
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQ 423 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~ 423 (815)
........+++.++++++.+.|+++ +++++.+.. +.++++.+++.+ ..++.+. ++++||.
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~ll~~~gv~ 388 (432)
T 3ei9_A 328 LEAMHKVIGFYKENTNIIIDTFTSL-------GYDVYGGKN-------APYVWVHFPNQS-----SWDVFAEILEKTHVV 388 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-------TCCEEECSS-------SSEEEEECTTSC-----HHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-------CceecCCCc-------ceEEEEECCCCC-----HHHHHHHHHHHCCEE
Confidence 1112122378888999999999886 566664432 677888776322 2234444 5667999
Q ss_pred eccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 424 LRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 424 v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+++|..|.+.. .+++|||+. +++++++++++.|++..
T Consensus 389 v~~g~~f~~~~---------------------------------~~~iRis~~--~~~e~l~~~l~rl~~~~ 425 (432)
T 3ei9_A 389 TTPGSGFGPGG---------------------------------EGFVRVSAF--GHRENILEACRRFKQLY 425 (432)
T ss_dssp CEEGGGGCGGG---------------------------------TTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred EeCchHhCCCC---------------------------------CCEEEEEec--CCHHHHHHHHHHHHHHh
Confidence 99987665321 378999974 59999999999998754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-23 Score=226.38 Aligned_cols=324 Identities=13% Similarity=0.037 Sum_probs=218.6
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.+||+++..+..++.+.+++.+.+.. +.. . ...... .+++++++++++|+++++ |++|+|+++|+.+++
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~~--~~~-~--~g~~~~----~~~~~~~l~~~~g~~~~~--v~~~~g~t~a~~~~~ 83 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNMT--QHA-G--YGQDSH----CAKAARLIGELLERPDAD--VHFISGGTQTNLIAC 83 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTTC--CCC-S--TTCSHH----HHHHHHHHHHHHTCTTSE--EEEESCHHHHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHhh--ccc-c--ccccHH----HHHHHHHHHHHhCCCCcc--EEEeCCchHHHHHHH
Confidence 57888887778888888888776542 111 1 122334 788999999999988776 999999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
.++. ++|| |+++...|+++... ..+...| .++.+ +..++++.++++++........++++|+++++ ||||.
T Consensus 84 ~~~~-~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~ 159 (359)
T 1svv_A 84 SLAL-RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGT 159 (359)
T ss_dssp HHHC-CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSC
T ss_pred HHHh-CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCce
Confidence 9997 8898 88999899887653 1123334 44443 34566777776553100001124899999998 79999
Q ss_pred ccC---hHHHHHHhhccccccccccCCCCeEEEEeccc---ccCCCCCCCCC----CCCcEEEEccccccccCCcceEEE
Q psy16512 217 KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT---YCGSNMLDLKQ----HQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 217 ~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~---~~g~~~~dl~~----~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
++| +++|.++|+ ++|+++|+|+++ +.+..+.+... ..+|+++.|+||+++ |.|+|+++
T Consensus 160 ~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~-~~~~g~l~ 227 (359)
T 1svv_A 160 QYTKQELEDISASCK-----------EHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGG-MFGEALII 227 (359)
T ss_dssp CCCHHHHHHHHHHHH-----------HHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTC-SSCEEEEE
T ss_pred ecCHHHHHHHHHHHH-----------HhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCC-CCceEEEE
Confidence 999 667788887 899999999998 55655444332 357999999999855 88899999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~ 364 (815)
+++++++.+.+....++. .+ +.+.....++... +...+ ... ++..++++++.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~ 282 (359)
T 1svv_A 228 LNDALKPNARHLIKQRGA-------------------LM---AKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKA 282 (359)
T ss_dssp CSGGGCTTHHHHHHHTTC-------------------CC---TTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHH
T ss_pred EcccHHHHHHHHHhcCCc-------------------cc---ccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHH
Confidence 998877655432111111 00 0111222222222 22211 122 788899999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
.| +. ++++++.+.. ++++++.++. ++.+.|.++ ||.+. +.. +
T Consensus 283 ~L-~~------~~~~~~~~~~-------~~~~~~~~~~---------~~~~~l~~~~gi~v~-~~~---~---------- 325 (359)
T 1svv_A 283 GL-EA------CGIRLAWPSA-------SNQLFPILEN---------TMIAELNNDFDMYTV-EPL---K---------- 325 (359)
T ss_dssp HH-HH------TTCCBSSCCS-------SSEECBEEEH---------HHHHHHTTTEECEEE-EEE---T----------
T ss_pred Hh-cc------CCeEEccCCc-------cceEEEEcCH---------HHHHHHHHhcCEEEE-ecc---c----------
Confidence 99 55 5677765543 5666665541 366777666 99982 100 0
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+++++.++++|+++++++|++++.
T Consensus 326 ----------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 356 (359)
T 1svv_A 326 ----------------------DGTCIMRLCTSWATEEKECHRFVEVLKRLVA 356 (359)
T ss_dssp ----------------------TTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred ----------------------CCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence 0137899999999999999999999998654
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=231.36 Aligned_cols=334 Identities=10% Similarity=-0.013 Sum_probs=217.1
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCC-CceeEEecC
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDS-DHYSVIFTS 131 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~-~~~~iv~t~ 131 (815)
+.++|..+... +.++.+.+++.+.+... ....+. ... ..++|+.++++++ +++ ++ |++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~g----~~~l~~~la~~~~~~~~~~~~~~~~--i~~~~ 92 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTR-----GFG----HPALVKALSCLYGKIYQRQIDPNEE--ILVAV 92 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCC-----TTC----CHHHHHHHHHHHHHHHTSCCCTTTS--EEEES
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCC-----CCC----hHHHHHHHHHHHHHHhCCCCCCCCC--EEEeC
Confidence 34566655544 35677777777766432 111111 112 4567777777766 555 55 99999
Q ss_pred CchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc-----------hhhhcchhhhhhhhhhhhhc
Q psy16512 132 GATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-----------DDARNMLNEFKESQENVENM 198 (815)
Q Consensus 132 g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-----------~~~~~~~~~~~~l~~~~~~~ 198 (815)
|+++|+.+++.++. ++|| |++....|+++.......+... .++++. +..++++.++++ +
T Consensus 93 g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~-------~ 164 (410)
T 3e2y_A 93 GAYGSLFNSIQGLV-DPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESK-------F 164 (410)
T ss_dssp HHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTT-------C
T ss_pred CcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhh-------c
Confidence 99999999999997 8999 8888888877765554443322 455542 223456666553 3
Q ss_pred CCCccEEEEecccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEecccccC----CCCCCCCCC----CCcE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQH----QPDF 267 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~----~~D~ 267 (815)
.+++++|++++++||||.+++. ++|.++|+ ++|+++|+|++++.. ..+.++..+ +.++
T Consensus 165 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i 233 (410)
T 3e2y_A 165 SSKTKAIILNTPHNPLGKVYTRQELQVIADLCV-----------KHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTI 233 (410)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEE
T ss_pred CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHH-----------HcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEE
Confidence 4679999999999999999864 45566666 899999999998642 222222222 3458
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
++.|++|.|| ++| +|++++++++++.+.... .....+.+.....++..+++..
T Consensus 234 ~~~S~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 234 TIGSAGKTFS-VTGWKLGWSIGPAHLIKHLQTVQ------------------------QNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp EEEEHHHHSS-CGGGCCEEEECCHHHHHHHHHHH------------------------HTTTCCCCHHHHHHHHHHHHHH
T ss_pred EEecchhhcC-CCCceEEEEEECHHHHHHHHHHH------------------------HhhccCCChHHHHHHHHHHHhh
Confidence 8899999998 556 899999888766553211 1123355667777776766531
Q ss_pred -------HhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-------cC-
Q psy16512 346 -------EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-------YG- 409 (815)
Q Consensus 346 -------~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-------~~- 409 (815)
......+ ++.+++++++.+.|+++ ++++..+.. +.++++.+....... .+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (410)
T 3e2y_A 289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-------GLKPIVPDG-------GYFIIADVSSLGADLSDMNSDEPYD 354 (410)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEBCSB-------SSEEEEECGGGCCCCTTCCSSCCHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-------CCeecCCCc-------cEEEEEEchhhhcccccccccccCH
Confidence 1111122 77788889999999886 567665543 667777765422100 00
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
...+.+++.++||.+.+|..|....... ...+++|+|++. ++++++++++
T Consensus 355 ~~~~~~ll~~~gv~v~~g~~f~~~~~~~----------------------------~~~~~iRis~~~--~~e~l~~~l~ 404 (410)
T 3e2y_A 355 YKFVKWMTKHKKLTAIPVSAFCDSKSKP----------------------------HFEKLVRFCFIK--KDSTLDAAEE 404 (410)
T ss_dssp HHHHHHHHHHHSEECEEGGGGSCTTTHH----------------------------HHTTEEEEECCC--CHHHHHHHHH
T ss_pred HHHHHHHHHHcCEEEeCchhhCCCCCCC----------------------------CCCCEEEEEEcC--CHHHHHHHHH
Confidence 1224445678899999987764321100 013899999885 9999999999
Q ss_pred HHHH
Q psy16512 490 FLNQ 493 (815)
Q Consensus 490 ~L~~ 493 (815)
+|++
T Consensus 405 ~l~~ 408 (410)
T 3e2y_A 405 IFRA 408 (410)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=230.63 Aligned_cols=307 Identities=11% Similarity=0.030 Sum_probs=200.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
++++|+++++++|++ + .+++++ +++|+++++. +. ++|| ||++..+|++.+.+. ..++..| ...++.+
T Consensus 57 ~~~lr~~la~~~g~~-~--~i~~~s-Gt~a~~~al~-~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 127 (393)
T 1n8p_A 57 RENLERAVAALENAQ-Y--GLAFSS-GSATTATILQ-SL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--- 127 (393)
T ss_dssp HHHHHHHHHHHTTCS-E--EEEESC-HHHHHHHHHH-TS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH---
T ss_pred HHHHHHHHHHHhCCC-c--EEEECC-hHHHHHHHHH-Hc-CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC---
Confidence 889999999999986 2 255555 5899999999 76 8898 888888888765543 3455556 4444433
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCC----CeEEEEecccccCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRS----NCFVLLDAATYCGSNML 258 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~----gi~vivD~a~~~g~~~~ 258 (815)
+ +.+++ .++++|++|++++++||||.++|+++|.++|+ ++ |+++|+|++++.+...
T Consensus 128 d-~~l~~-------~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~-----------~~~~~~~~~livD~a~~~~~~~- 187 (393)
T 1n8p_A 128 L-NDLPQ-------LIKENTKLVWIETPTNPTLKVTDIQKVADLIK-----------KHAAGQDVILVVDNTFLSPYIS- 187 (393)
T ss_dssp H-HHHHH-------HSCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-----------HHTTTTTCEEEEECTTTHHHHC-
T ss_pred h-HHHHH-------hcccCceEEEEECCCCCcceecCHHHHHHHHH-----------HhCCCCCCEEEEeCCccccccC-
Confidence 3 44444 33467999999999999999999999999999 78 9999999999877542
Q ss_pred CCCCCCCcEEEEccccccccCCc--c-eEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTG--L-GALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G--~-G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
+...+++|+++.|+||++| |+| + |+++++ +++++.+.+.. ....++.+...
T Consensus 188 ~~~~~~~di~~~S~sK~~g-~~G~rigG~~~~~~~~~~~~l~~~~------------------------~~~g~~~~~~~ 242 (393)
T 1n8p_A 188 NPLNFGADIVVHSATKYIN-GHSDVVLGVLATNNKPLYERLQFLQ------------------------NAIGAIPSPFD 242 (393)
T ss_dssp CGGGGTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH------------------------HHHCCCCCHHH
T ss_pred CHHHcCCeEEEEECccccc-CCCCceeEEEEeCCHHHHHHHHHHH------------------------HhcCCCCCHHH
Confidence 3344579999999999999 767 6 888885 55655443211 01122334444
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EE-EcCCCCCCCC---------Cc-c-cceEEEEEe
Q psy16512 335 IISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VE-LYHDTDYGES---------KY-Q-GNIVNFNLL 401 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~-l~~~~~~~~~---------~~-~-~~i~~f~~~ 401 (815)
.+++..+++.+. ..+++..+.+..+.+.|.+. +. +. +..|...+.+ .. . +++++|.++
T Consensus 243 ~~~~~~~l~~~~---~~~~~~~~~~~~l~~~L~~~------~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~ 313 (393)
T 1n8p_A 243 AWLTHRGLKTLH---LRVRQAALSANKIAEFLAAD------KENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK 313 (393)
T ss_dssp HHHHHHHHTTHH---HHHHHHHHHHHHHHHHHTSC------TTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred HHHHHhccchHH---HHHHHHHHHHHHHHHHHHhC------CCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence 444444444322 22355566677777777765 33 33 2222110001 11 4 789999987
Q ss_pred cCCCCccCHHHHHHhhhcCCcEeccCccCCchhh---hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 402 HKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC---QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~---~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
+.. . ....+...+...+|.++.|..|+.... ..+..++.+. +. .-|...+.||+|+|.+
T Consensus 314 ~~~-~--~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~-~~--------------~~g~~~~~iRlS~g~~ 375 (393)
T 1n8p_A 314 GGA-E--AASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEA-RE--------------ASGVFDDLVRISVGIE 375 (393)
T ss_dssp SCH-H--HHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTT-TT--------------TTSCCTTEEEEECCSS
T ss_pred CcH-H--HHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHH-HH--------------hcCCCCCeEEEEEccC
Confidence 421 1 112355566667788888877764321 1111111100 00 1133358999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy16512 479 SNWDDVKYFLSFLNQY 494 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~ 494 (815)
+++++++++.++|+++
T Consensus 376 ~~~~~i~~l~~al~~~ 391 (393)
T 1n8p_A 376 DTDDLLEDIKQALKQA 391 (393)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=227.11 Aligned_cols=330 Identities=10% Similarity=0.065 Sum_probs=218.3
Q ss_pred hhhhhccc-ccchhhHHHHHHHHhhccccCCCCh---hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 64 YLDYTGAG-VYSQSQMNQTIEQLKENIFSHPHGN---SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 64 yLd~a~~~-~~p~~v~~al~~~l~~~~~~np~s~---~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
|+++...+ ..++.+.+++.+.+... ..+++.. +..... ..++++++++++|.+ + .|++++|++ ++..
T Consensus 51 ~~~~~~~~~~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~----~~~l~~~la~~~~~~-~--~i~~~sG~~-a~~~ 121 (401)
T 2bwn_A 51 WCGNDYLGMGQHPVVLAAMHEALEAV-GAGSGGTRNISGTTAY----HRRLEAEIAGLHQKE-A--ALVFSSAYN-ANDA 121 (401)
T ss_dssp CSCSCTTSGGGCHHHHHHHHHHHHHH-CSCCCSBTTTBCCBHH----HHHHHHHHHHHTTCS-E--EEEESCHHH-HHHH
T ss_pred eeCCCcccCCCCHHHHHHHHHHHHHc-CCCCCCcCcccCChHH----HHHHHHHHHHHhCCC-c--EEEECCcHH-HHHH
Confidence 44443323 23567888887766542 2233311 222334 889999999999973 3 388887776 7777
Q ss_pred HHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcC-CCccEEEEecccCCCcc
Q psy16512 140 VSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMR-HSNSLFVYPAESNFSGT 216 (815)
Q Consensus 140 ~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~ 216 (815)
++.++. +.+|| |++...+|+++.......+.. .+.++.+ +.+.++++++ ... +++++|++++++||||.
T Consensus 122 ~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~-~~~v~~~---d~~~le~~l~----~~~~~~~~~v~~~~~~nptG~ 193 (401)
T 2bwn_A 122 TLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGP-KRIFRHN---DVAHLRELIA----ADDPAAPKLIAFESVYSMDGD 193 (401)
T ss_dssp HHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCC-EEEECTT---CHHHHHHHHH----HSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCe-EEEEcCC---CHHHHHHHHH----hhccCCceEEEEecCcCCCCC
Confidence 766553 25888 888888998876544332211 3333332 3444544332 222 47899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCC--C---CCC--CCcEEEEccccccccCCcceEEEEe
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLD--L---KQH--QPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~d--l---~~~--~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
+.|+++|.++|+ ++|+++|+|++++.|.. +.. + ... .+|+++.|++|+|+ .+| |+++.+
T Consensus 194 ~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~-~~G-G~~~~~ 260 (401)
T 2bwn_A 194 FGPIKEICDIAE-----------EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYG-VFG-GYIAAS 260 (401)
T ss_dssp BCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTC-SCC-EEEEEC
T ss_pred cCCHHHHHHHHH-----------HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhcc-CCC-CEEecC
Confidence 999999999999 89999999999986532 110 0 011 35899999999999 456 898888
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHH
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR--KSFTNAFELSQYTYFYF 366 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~--~~~~~~~~l~~~l~~~L 366 (815)
+++.+.+.... ....+..++++ ..++++.++++++...+ ...++.+++++++.+.|
T Consensus 261 ~~~~~~l~~~~---------------------~~~~~~~~~~~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 318 (401)
T 2bwn_A 261 ARMVDAVRSYA---------------------PGFIFSTSLPP-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRL 318 (401)
T ss_dssp HHHHHHHHHHC---------------------HHHHTSBCCCH-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---------------------cCceecCCCCH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 76654432110 00123344544 67777778888876542 22388899999999999
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+++ +++++.+. ++++++.++.. .+..++.+.| .++||.++++..+..+
T Consensus 319 ~~~-------g~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~L~~~~gi~v~~~~~~~~~------------ 367 (401)
T 2bwn_A 319 KAL-------GMPIIDHG--------SHIVPVVIGDP----VHTKAVSDMLLSDYGVYVQPINFPTVP------------ 367 (401)
T ss_dssp HHH-------TCCBCCCS--------SSCEEEECCCH----HHHHHHHHHHHHHHCEECCEECTTTSC------------
T ss_pred HHC-------CCcccCCC--------CCeEEEEeCCh----HHHHHHHHHHHhcCCEEEeecCCCCCC------------
Confidence 886 45555332 46888877531 1233577777 5889999876432100
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...+++|+|++.+++++|+++++++|++++.
T Consensus 368 --------------------~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 368 --------------------RGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp --------------------TTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred --------------------CCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 0126899999999999999999999998753
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-22 Score=228.01 Aligned_cols=323 Identities=13% Similarity=0.080 Sum_probs=215.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC-------------CCc-EEEecCCCcchhhHHHHhhc--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN-------------EGS-FIYLTDNHTSVLGMRELVKT-- 170 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~-------------~gd-vv~~~~~h~s~~~~~~~~~~-- 170 (815)
.+++.+++++++|.+.+...++||+|+|+|+..++.++... +++ |+++...|+++......++.
T Consensus 137 e~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~ 216 (511)
T 3vp6_A 137 EQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGT 216 (511)
T ss_dssp HHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCC
Confidence 56788999999999853234999999999999888777521 455 77888899999887777654
Q ss_pred -cc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 171 -NQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 171 -~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
.. .++++.++.++++.++++|+... .....+++|++++++|++|.+.|+++|+++|+ ++|+++|+|
T Consensus 217 ~~~~~v~~d~~~~~d~~~Le~~i~~~~-~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~-----------~~~~~lhvD 284 (511)
T 3vp6_A 217 DNVILIKCNERGKIIPADFEAKILEAK-QKGYVPFYVNATAGTTVYGAFDPIQEIADICE-----------KYNLWLHVD 284 (511)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHH-HTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHH-----------HHTCEEEEE
T ss_pred CcEEEeecCCCCccCHHHHHHHHHHHH-hcCCCcEEEEEecCCCCCcccccHHHHHHHHH-----------HcCCEEEEE
Confidence 22 56677677788888888664211 11223899999999999999999999999999 899999999
Q ss_pred cccccCCCCCC-----CC-CCCCcEEEEccccccccCCcceEEEEeccc-cccc---CcccccCceEEEEecCCcccccc
Q psy16512 249 AATYCGSNMLD-----LK-QHQPDFISISFYKMFGYPTGLGALIVKQKS-AHVL---NKTFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 249 ~a~~~g~~~~d-----l~-~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l---~~~~~g~~~~~~~~~~~~~~~~~ 318 (815)
++++.+....+ +. ..++|++++++||||+.|.|+|+++++++. ++.. .+.+...... .... .+
T Consensus 285 ~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~----~~~~---~~ 357 (511)
T 3vp6_A 285 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDK----HYDV---SY 357 (511)
T ss_dssp ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSC----SSCG---GG
T ss_pred ccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccc----cccc---cc
Confidence 99988765321 11 125799999999999989999999998753 3221 1222111100 0000 00
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
......+..+. . ...+++..+++.+...+. .+++..++++++.+.|+++ |+++++.+.. ...+++
T Consensus 358 ~~~~~~~~~~r-~-~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~------pg~~l~~~~~-----p~~~~v 424 (511)
T 3vp6_A 358 DTGDKAIQCGR-H-VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR------EEFEMVFNGE-----PEHTNV 424 (511)
T ss_dssp CCGGGSSCSSC-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC------TTEEESSSSC-----CSSSCE
T ss_pred CccCCCCCCCC-c-hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEecCC-----CCeEEE
Confidence 00001112222 1 234455566665544332 2288999999999999988 8999987311 135778
Q ss_pred EEEEecCC--C---CccC-------HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 397 NFNLLHKD--G---TYYG-------YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 397 ~f~~~~~~--~---~~~~-------~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+|.+.... . .... ..++.+.|.++|+.+..... .
T Consensus 425 ~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~-----~----------------------------- 470 (511)
T 3vp6_A 425 CFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP-----Q----------------------------- 470 (511)
T ss_dssp EEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE-----E-----------------------------
T ss_pred EEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE-----e-----------------------------
Confidence 88764211 0 0000 12466777777865432100 0
Q ss_pred CCCceEEEEec-cCCCCHHHHHHHHHHHHHHH
Q psy16512 465 GKPTGSIRISY-GHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 465 ~~~~g~iRvs~-g~~~t~edi~~lv~~L~~~~ 495 (815)
+...+++|+++ +..++.+||++++++|+++-
T Consensus 471 ~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~ 502 (511)
T 3vp6_A 471 GDKANFFRMVISNPAATQSDIDFLIEEIERLG 502 (511)
T ss_dssp TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 00126899999 78999999999999998864
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=229.54 Aligned_cols=301 Identities=12% Similarity=0.091 Sum_probs=203.5
Q ss_pred HHHHHHHHHhHc----CC-CCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch
Q psy16512 107 IDQMRTKILQYF----NT-DSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD 179 (815)
Q Consensus 107 ~~~~r~~la~~~----g~-~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~ 179 (815)
..++|+.+++++ |. ++++ |++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++.+.+
T Consensus 120 ~~~lr~~ia~~~~~~~g~~~~~~--v~~t~G~~~al~~~~~~l~-~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 196 (448)
T 3aow_A 120 FTPLRETLMKWLGKRYGISQDND--IMITSGSQQALDLIGRVFL-NPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE 196 (448)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTSE--EEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred cHHHHHHHHHHHHHhcCcCChhh--EEEeCcHHHHHHHHHHHHc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC
Confidence 667888888888 98 5554 9999999999999999997 8999 8888877776654443322111 4555543
Q ss_pred hhhcchhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 180 DARNMLNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
+ ++++.++++++... ...+++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++...
T Consensus 197 g-~d~~~L~~~l~~~~-~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~-----------~~~~~lI~De~y~~~~ 263 (448)
T 3aow_A 197 G-MKVEILEEKLKELK-SQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELAS-----------EYDFIVVEDDPYGELR 263 (448)
T ss_dssp E-ECHHHHHHHHHHHH-HTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECSCTTCB
T ss_pred C-CCHHHHHHHHhhhh-ccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHH-----------HcCCEEEEECCCcccc
Confidence 3 66777666442000 011368887 5789999999999976 4566666 8999999999987642
Q ss_pred ----CCCCCC---CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 ----NMLDLK---QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ----~~~dl~---~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
...++. ..+.++++.||+|+|+ | | +||+++++++++.+..... ..
T Consensus 264 ~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~-GlriG~v~~~~~l~~~l~~~~~-----------------------~~- 317 (448)
T 3aow_A 264 YSGNPEKKIKALDNEGRVIYLGTFSKILA-P-GFRIGWMVGDPGIIRKMEIAKQ-----------------------ST- 317 (448)
T ss_dssp CSSCCCCCTGGGCTTSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHHH-----------------------HH-
T ss_pred CCCCCCcCHHhcCCCCCEEEEccchhhcc-c-cccEEEEEeCHHHHHHHHHHHH-----------------------Hh-
Confidence 122222 2346789999999999 6 7 7999999887765532210 01
Q ss_pred CCCCChhHHHHHHHHHHHH--Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 327 DGTVNYLAIISLKYGFDTM--EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~l--~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
..+.+.+...++.++++.. ...-.. .++++++++++.+.|++.. | ++++..+.. +.++++.++.
T Consensus 318 ~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~g~~~~~p~~-------g~~~~v~~~~ 385 (448)
T 3aow_A 318 DLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFM-----PEGVKWTKPEG-------GMFIWVTLPD 385 (448)
T ss_dssp HSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CTTCEECCCSB-------SSEEEEECST
T ss_pred cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEeCCCc-------cEEEEEEcCC
Confidence 1234556666666666531 111112 2667788888888887631 4 577765543 6778888763
Q ss_pred CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
. ++..++.+.|.++||.+++|..|.+. +...+++|+|++.. +++
T Consensus 386 ~----~~~~~l~~~l~~~gV~v~pg~~f~~~-------------------------------~~~~~~iRls~~~~-~~e 429 (448)
T 3aow_A 386 G----IDSKKMLERAIKKGVAYVPGEAFYAH-------------------------------RDVKNTMRLNFTYV-DED 429 (448)
T ss_dssp T----CCHHHHHHHHHHTTEECEEGGGGSTT-------------------------------CCCCSEEEEECSSS-CTH
T ss_pred C----CCHHHHHHHHHHCCcEEEcchhhcCC-------------------------------CCCCCEEEEEeCCC-CHH
Confidence 1 23345777787789999988655321 01137899999864 789
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
++++++++|.+++.+
T Consensus 430 ~i~~~~~~L~~~l~~ 444 (448)
T 3aow_A 430 KIMEGIKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987743
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=223.43 Aligned_cols=288 Identities=9% Similarity=0.002 Sum_probs=195.2
Q ss_pred HHHHHHHHHhHc----CC--CCCceeEEecCCchhhHHHHHhhhccCC--Cc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYF----NT--DSDHYSVIFTSGATSAIKTVSEYFEFNE--GS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~----g~--~~~~~~iv~t~g~t~al~~~~~al~~~~--gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++ |+ ++++ |++|+|+++|+.+++.++. ++ || |++....|+++.......+... .++.
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~~~--i~~t~g~~~al~~~~~~~~-~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 137 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKENE--LISTLGSREVLFNFPSFVL-FDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPL 137 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGG--EEEESSSHHHHHHHHHHHT-TTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHH--EEECcCcHHHHHHHHHHHc-CCCCCCEEEEecCCcHhHHHHHHHcCCEEEEccc
Confidence 445666666655 87 5666 9999999999999999997 88 88 8888888877655444333222 6677
Q ss_pred CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC
Q psy16512 177 SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN 256 (815)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~ 256 (815)
+.++.+++ .+++++ .+++++|++++++||||.++|.+++.++++ .|+++|+++|+|++++....
T Consensus 138 ~~~~~~~~-~l~~~~-------~~~~~~v~~~~p~nptG~~~~~~~l~~i~~--------~~~~~~~~li~De~~~~~~~ 201 (376)
T 3ezs_A 138 TKENDFTP-SLNEKE-------LQEVDLVILNSPNNPTGRTLSLEELISWVK--------LALKHDFILINDECYSEIYE 201 (376)
T ss_dssp CGGGTSCC-CCCHHH-------HHHCSEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTTTCBS
T ss_pred CCCCCcch-hHHhhh-------ccCCCEEEEcCCCCCcCCCCCHHHHHHHHH--------HHHHcCcEEEEEccchhhcc
Confidence 66654554 444433 246899999999999999999776655543 23389999999999875322
Q ss_pred ---CCCCC---------CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 257 ---MLDLK---------QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 257 ---~~dl~---------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
+.++. ..+.++++.|+||+|| ++| +|+++.++++++.+....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~----------------------- 257 (376)
T 3ezs_A 202 NTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSS-APGLRSGFIAGDSRLLEKYKAFR----------------------- 257 (376)
T ss_dssp SSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTT-CGGGCCEEEEECHHHHHHHHHHH-----------------------
T ss_pred CCCCCCHHHccccccccccCcEEEEecchhccC-CccceeEEEeeCHHHHHHHHHHH-----------------------
Confidence 22211 3467799999999998 446 799999887766553211
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
....++.+.....++.++++.........++..++++++.+.|+ ++. .+ ..+.++++.++
T Consensus 258 -~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~---------~~~--~~-------~~~~~~~~~~~- 317 (376)
T 3ezs_A 258 -AYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLKLARKIFK---------NTL--IY-------PYSFYVYLPVQ- 317 (376)
T ss_dssp -TTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHST---------TCC--CC-------SBSSEEEEECS-
T ss_pred -hhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhc---------CCC--CC-------CcceEEEEECC-
Confidence 12234667777777777776422221122556666666666554 111 12 23667777765
Q ss_pred CCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 403 KDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
+ ..++.+.|.+ +||.+++|..|.... ...+++|+|++. ++
T Consensus 318 -~-----~~~~~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~--~~ 358 (376)
T 3ezs_A 318 -N-----GENFAKTLYQNEGIITLPALYLGRNR-------------------------------IGADYVRLALVY--DT 358 (376)
T ss_dssp -C-----HHHHHHHHHHHHCCBCEEGGGGCSTT-------------------------------TTTTEEEEECCS--CH
T ss_pred -C-----HHHHHHHHHHhCCEEEeCcHHhCCCC-------------------------------CCCCeEEEEEcC--CH
Confidence 1 2346777766 899999987765311 114799999984 89
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
+++++++++|.+++.
T Consensus 359 ~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 359 PLLEKPLEIIETYRE 373 (376)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999774
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.9e-23 Score=227.69 Aligned_cols=301 Identities=13% Similarity=0.104 Sum_probs=201.9
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++++.+++++ | +++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.
T Consensus 77 ~~~l~~~la~~~~~~~g~~~~~~~--v~~t~g~t~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~ 153 (407)
T 2zc0_A 77 IPELREELAAFLKKYDHLEVSPEN--IVITIGGTGALDLLGRVLI-DPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN 153 (407)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET
T ss_pred CHHHHHHHHHHHHHhcCCCCCcce--EEEecCHHHHHHHHHHHhc-CCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC
Confidence 677888888888 8 45555 9999999999999999997 8898 8888877776544433322211 455544
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEE-EEecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLF-VYPAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv-~i~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
++ ++++.++++++.... ..+++++| ++++++||||.++|.+ +|.++|+ ++|+++|+|++++.+
T Consensus 154 ~~-~d~~~l~~~l~~~~~-~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~ 220 (407)
T 2zc0_A 154 DG-MRVDLLEEKIKELKA-KGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIAS-----------KYDLLIIEDTAYNFM 220 (407)
T ss_dssp TE-ECHHHHHHHHHHHHH-TTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTS
T ss_pred CC-CCHHHHHHHHHhhhc-ccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEECCCccc
Confidence 33 666666654421000 11367887 5789999999999998 6777777 899999999998764
Q ss_pred CC----CCCCCCC---CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccc
Q psy16512 255 SN----MLDLKQH---QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKF 325 (815)
Q Consensus 255 ~~----~~dl~~~---~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (815)
.. ..++..+ +.++++.|+||+|+ | | +|++++++++++.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~-G~r~G~~~~~~~~~~~~~~~~~~------------------------ 274 (407)
T 2zc0_A 221 RYEGGDIVPLKALDNEGRVIVAGTLSKVLG-T-GFRIGWIIAEGEILKKVLMQKQP------------------------ 274 (407)
T ss_dssp BSSCSSCCCGGGGCSSCCEEEEEESTTTTC-T-TSCCEEEECCHHHHHHHHHHHTT------------------------
T ss_pred ccCCCCCCChhhcCCCCCEEEEcccccccC-C-CcceEEEecCHHHHHHHHHHHHh------------------------
Confidence 32 1222222 34578899999999 6 5 89999988776655322100
Q ss_pred cCCCCChhHHHHHHHHHHHH--H-hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 326 EDGTVNYLAIISLKYGFDTM--E-KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 326 ~~gt~~~~~~~al~~al~~l--~-~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
...+.+.....++..+++.. . ..-... ++..++++++.+.|++.. |+++++.+. .+.++++.++
T Consensus 275 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~~-------~~~~~~~~~~ 342 (407)
T 2zc0_A 275 IDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL-----PNAEFTKPI-------AGMFVMFFLP 342 (407)
T ss_dssp TTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC-----TTSCBCCCS-------BSSEEEEECS
T ss_pred hcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEecCC-------CcEEEEEEcC
Confidence 01123555666665666542 1 111222 777888899999997631 455554433 2567778775
Q ss_pred cCCCCccCHHHHHHhhhcC-CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 402 HKDGTYYGYSEVQNLANLK-KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 402 ~~~~~~~~~~~v~~~l~~~-gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.. ++..++.+.|.++ ||.+++|..|.... ...+++|+|++.. +
T Consensus 343 ~~----~~~~~l~~~l~~~~gi~v~~g~~~~~~~-------------------------------~~~~~iRis~~~~-~ 386 (407)
T 2zc0_A 343 EG----ADGISFANELMEREGVVVVPGKPFYTDE-------------------------------SGKNAIRLNFSRP-S 386 (407)
T ss_dssp TT----CCHHHHHHHHHHHTCEECBCSGGGCSSS-------------------------------CCTTEEEEECSSS-C
T ss_pred CC----CCHHHHHHHHHHhCCeEEECchhccCCC-------------------------------CCCCeEEEEeCCC-C
Confidence 31 2334577777766 99999887654321 0137899999977 8
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy16512 481 WDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 481 ~edi~~lv~~L~~~~~~ 497 (815)
++++++++++|.+++.+
T Consensus 387 ~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 387 KEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987643
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-22 Score=219.95 Aligned_cols=305 Identities=16% Similarity=0.102 Sum_probs=205.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..+++++++++++.+ + .+++++| ++|+.+++.++. ++|| |++...+|++.+. +...+...| ...++.+
T Consensus 54 ~~~l~~~la~~~~~~-~--~i~~~sG-t~a~~~~~~~~~-~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 125 (386)
T 1cs1_A 54 RDVVQRALAELEGGA-G--AVLTNTG-MSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--- 125 (386)
T ss_dssp HHHHHHHHHHHHTCS-E--EEEESSH-HHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c--EEEeCCH-HHHHHHHHHHHh-CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC---
Confidence 788999999999986 3 3777666 899999999986 8898 8899999988665 334445556 3333322
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++++ .+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+....++ .
T Consensus 126 d~~~l~~~i-------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~-~ 186 (386)
T 1cs1_A 126 DEQALRAAL-------AEKPKLVLVESPSNPLLRVVDIAKICHLAR-----------EVGAVSVVDNTFLSPALQNPL-A 186 (386)
T ss_dssp CHHHHHHHH-------HTCCSEEEEECSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHHhh-------ccCCcEEEEeCCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCCcccccCCcc-c
Confidence 445555533 257899999999999999999999999999 899999999999887654333 4
Q ss_pred CCCcEEEEccccccccCCcc--eEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGL--GALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||++++|.+. |++++++ ++++.+.+...+ ..++.+....+++.
T Consensus 187 ~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~------------------------~~~~~~~~~~~~~~ 242 (386)
T 1cs1_A 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN------------------------IGVTGGAFDSYLLL 242 (386)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH------------------------HTCBCCHHHHHHHH
T ss_pred cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHh------------------------cCCCCCHHHHHHHH
Confidence 57899999999999977663 9999987 666555332211 12344555555444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+.. ..++..+.++.+.+.|+++ +.+.-+ .+.-... ....++++.|.+.+.
T Consensus 243 ~~l~~~~~---~~~~~~~~~~~l~~~l~~~------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 307 (386)
T 1cs1_A 243 RGLRTLVP---RMELAQRNAQAIVKYLQTQ------PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD------ 307 (386)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHTTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC------
T ss_pred hcccHHHH---HHHHHHHHHHHHHHHHhcC------CCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC------
Confidence 45443321 2255666677777777776 344322 1110000 023488999987642
Q ss_pred HHHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 410 YSEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
...+.+.|.++||.++. | +.|..... ..... +.+..+ |...+++|+|++.+++
T Consensus 308 ~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~---~~~~~-~~~~~~--------------g~~~~~iRis~~~~~~ 369 (386)
T 1cs1_A 308 EQTLRRFLGGLSLFTLAESLGGVESLISHAATMTH---AGMAP-EARAAA--------------GISETLLRISTGIEDG 369 (386)
T ss_dssp HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTT---TTSCH-HHHHHH--------------TCCTTEEEEECCSSCH
T ss_pred HHHHHHHHHhCCcceEcccCCCcceeeeccccccc---ccCCH-HHHHhc--------------CCCCCeEEEEEccCCH
Confidence 23577888899999874 4 22221110 00110 111111 2334899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLNQYF 495 (815)
Q Consensus 481 ~edi~~lv~~L~~~~ 495 (815)
+++++++.++|+++.
T Consensus 370 ~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 370 EDLIADLENGFRAAN 384 (386)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998753
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=228.91 Aligned_cols=315 Identities=11% Similarity=-0.027 Sum_probs=209.6
Q ss_pred HHHHHHHHHhHcCCCCCc-------eeEEecCCchhhHHHHHhhhccC------------------CCc-EEEecCCCcc
Q psy16512 107 IDQMRTKILQYFNTDSDH-------YSVIFTSGATSAIKTVSEYFEFN------------------EGS-FIYLTDNHTS 160 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~-------~~iv~t~g~t~al~~~~~al~~~------------------~gd-vv~~~~~h~s 160 (815)
.+++.+++++++|.+.+. ...+||+|+|+|+..++.+.... +++ ++++..+|+|
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s 194 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSS 194 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHH
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHH
Confidence 567888999999987531 14899999999998888776311 234 7888899999
Q ss_pred hhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccC
Q psy16512 161 VLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 161 ~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~ 239 (815)
+.......+... .++++.++ ++++.++++|+... .....+.+|++++++|++|.+.|+++|+++|+
T Consensus 195 ~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~-~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~----------- 261 (475)
T 3k40_A 195 VERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDV-AEGLIPFYAVVTLGTTNSCAFDYLDECGPVGN----------- 261 (475)
T ss_dssp HHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHH-HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------
T ss_pred HHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHH-HCCCccEEEEEEecCCCCcCcCCHHHHHHHHH-----------
Confidence 877666554333 67777777 99999988765211 11123778999999999999999999999999
Q ss_pred CCCeEEEEecccccCCCCCC-----CCC-CCCcEEEEccccccccCCcceEEEEecccc-c-cc--CcccccCceEEEEe
Q psy16512 240 RSNCFVLLDAATYCGSNMLD-----LKQ-HQPDFISISFYKMFGYPTGLGALIVKQKSA-H-VL--NKTFYGGGTVKISM 309 (815)
Q Consensus 240 ~~gi~vivD~a~~~g~~~~d-----l~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~~ 309 (815)
++|+++|+|++++.+....+ +.. ..+|++++|+|||++.|.|+|++++++... . .+ .+.+..........
T Consensus 262 ~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 262 KHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp HTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC--------------------
T ss_pred HhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 89999999999987643211 111 146999999999998899999999987643 1 11 11121111100000
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~ 387 (815)
.+. ...++.+. + ...+++..++..+...+.. .++..++++++.+.|+++ |+++++.+..
T Consensus 342 ~~~---------~~~~~~sr-~-~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~l~~~~~-- 402 (475)
T 3k40_A 342 DYR---------HWQIPLGR-R-FRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD------SRFELAAEIN-- 402 (475)
T ss_dssp ----------------CCCG-G-GTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEESSCCB--
T ss_pred Ccc---------cccccCCC-c-ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCEEEecCCc--
Confidence 000 01122222 2 2345566666665544322 288999999999999998 8999987543
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
.++++|++.+.+. ...++.+.|.++|+...++ ... .|
T Consensus 403 -----~~iv~f~~~~~~~---~~~~l~~~L~~~g~~~~~~-----~~~----------------------------~g-- 439 (475)
T 3k40_A 403 -----MGLVCFRLKGSNE---RNEALLKRINGRGHIHLVP-----AKI----------------------------KD-- 439 (475)
T ss_dssp -----TTEEEEEESSCHH---HHHHHHHHHHHHTSCBCEE-----EEE----------------------------TT--
T ss_pred -----eEEEEEEeCCchH---HHHHHHHHHHhCCcEEEEe-----eEE----------------------------CC--
Confidence 6899999864211 1235667777666543221 100 01
Q ss_pred ceEEEEecc-CCCCHHHHHHHHHHHHHHHh
Q psy16512 468 TGSIRISYG-HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 468 ~g~iRvs~g-~~~t~edi~~lv~~L~~~~~ 496 (815)
..++|+++. +.+|++||++++++|+++..
T Consensus 440 ~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 469 (475)
T 3k40_A 440 VYFLRMAICSRFTQSEDMEYSWKEVSAAAD 469 (475)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 378999976 45699999999999998764
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=223.49 Aligned_cols=314 Identities=10% Similarity=0.041 Sum_probs=206.5
Q ss_pred cchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCC--CC-ceeEEecCCchhhHHHHHhhh
Q psy16512 73 YSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTD--SD-HYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~--~~-~~~iv~t~g~t~al~~~~~al 144 (815)
.++.+.+++.+.+... ....+. ... ..++|+.+++++ |++ ++ + |++|+|+++|+.+++.++
T Consensus 39 ~~~~v~~a~~~~~~~~~~~~y~~-----~~~----~~~l~~~ia~~~~~~~g~~~~~~~~--v~~~~g~~~a~~~~~~~l 107 (376)
T 2dou_A 39 PPEAPLKALAEALNDPTTYGYCL-----KSC----TLPFLEEAARWYEGRYGVGLDPRRE--ALALIGSQEGLAHLLLAL 107 (376)
T ss_dssp CCHHHHHHHHHHTTCGGGSSCCC-----HHH----HHHHHHHHHHHHHHHHSCCCCTTTS--EEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcCCCCC-----CCC----CHHHHHHHHHHHHHHhCCCCCCCcc--EEEcCCcHHHHHHHHHHh
Confidence 3566777776655321 111111 123 677888888887 875 33 5 999999999999999999
Q ss_pred ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 145 EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 145 ~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
. ++|| |++....|+++.......+... .++.+.....+++.++++++ +++++|++++++||||.++|.++
T Consensus 108 ~-~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~-------~~~~~v~l~~p~nptG~~~~~~~ 179 (376)
T 2dou_A 108 T-EPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW-------REAKVLLLNYPNNPTGAVADWGY 179 (376)
T ss_dssp C-CTTCEEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH-------HHEEEEEECSSCTTTCCCCCHHH
T ss_pred c-CCCCEEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc-------cCceEEEECCCCCCcCccCCHHH
Confidence 7 8898 8888877777654443322221 34442122356666665442 46899999999999999999655
Q ss_pred ---HHHHhhccccccccccCCCCeEEEEecccccCCC---CCCCC----CCCCcEEEEccccccccCCc--ceEEEEecc
Q psy16512 223 ---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLK----QHQPDFISISFYKMFGYPTG--LGALIVKQK 290 (815)
Q Consensus 223 ---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~----~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~ 290 (815)
|.++|+ ++|+++|+|++++.+.. +.++. ..+.++++.|+||+|| ++| +|+++.+++
T Consensus 180 l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~ 247 (376)
T 2dou_A 180 FEEALGLAR-----------KHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYN-LAGFRLGFALGSEE 247 (376)
T ss_dssp HHHHHHHHH-----------HTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHT-CGGGCCEEEEECHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcC-ChhheeEEEecCHH
Confidence 555666 89999999999875421 22211 1246788999999998 457 799999888
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l 369 (815)
+++.+.... .....+.+.....++.++++.... .....++.+++++++.+.|+++
T Consensus 248 ~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 303 (376)
T 2dou_A 248 ALARLERVK------------------------GVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKGV 303 (376)
T ss_dssp HHHHHHHHH------------------------HHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHH------------------------HhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766553221 111224566666666666654211 1112267777888888888653
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
++++.+. .+.++++.++.. .+..++.+.|.++||.+++|..|...
T Consensus 304 --------~~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~l~~~gi~v~~g~~f~~~---------------- 348 (376)
T 2dou_A 304 --------LSLLPPR-------ATMYLWGRLPEG----VDDLEFGLRLVERGVALAPGRGFGPG---------------- 348 (376)
T ss_dssp --------SEECCCC-------BSSEEEEECCTT----CCHHHHHHHHHHTTEECEEGGGGCGG----------------
T ss_pred --------cCccCCC-------eeEEEEEECCCC----CCHHHHHHHHHHCCEEEcCchhhCCC----------------
Confidence 3444332 245677777531 23345777887779999988665321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..+++|+|++. ++++++++++.|++++
T Consensus 349 -----------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 349 -----------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp -----------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred -----------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 03789999985 7899999999998754
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=234.17 Aligned_cols=277 Identities=17% Similarity=0.125 Sum_probs=202.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--Cch---
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVD--- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~--- 179 (815)
+.++++++++ +|++ + .+++|+|+|+|+.+++.++. ++|| |+++..+|+++.......+... .++. +.+
T Consensus 59 ~~~~~~~la~-~g~~-~--~v~~~~G~t~a~~~~~~a~~-~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~ 133 (446)
T 2x3l_A 59 ILKSMKQVEK-HSDY-D--GYFLVNGTTSGILSVIQSFS-QKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTNH 133 (446)
T ss_dssp HHHHHHHHCS-CTTE-E--EEEESSHHHHHHHHHHHTTT-TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTSS
T ss_pred HHHHHHHHHh-cCCC-c--eEEEeCCHHHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccCc
Confidence 7899999999 9986 3 49999999999999999997 8999 9999999999877665544333 4444 322
Q ss_pred -hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--
Q psy16512 180 -DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-- 256 (815)
Q Consensus 180 -~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-- 256 (815)
..++++.+ ..+++++|++++ .|++|.+.|+++|.++|+ ++|+++++|++|+. ..
T Consensus 134 ~~~~d~~~l----------~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~-----------~~~~~livDea~~~-~~~f 190 (446)
T 2x3l_A 134 YNKVNLSRL----------NNDGHKLVVLTY-PNYYGETFNVEEVIKSLH-----------QLNIPVLIDEAHGA-HFGL 190 (446)
T ss_dssp EEEEEC-----------------CCEEEEES-SCTTSCCCCHHHHHHHHH-----------HTTCCEEEECTTCT-TTTS
T ss_pred CCCCCHHHH----------cCCCceEEEEEC-CCCCeEecCHHHHHHHHH-----------hcCCeEEEcchhhh-hhcc
Confidence 23444433 135689999999 566999999999999999 89999999999876 22
Q ss_pred ---CCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 257 ---MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 257 ---~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
+.+....++|+++.|+||+++++.|+|+++++++.++ +.+...+ ...+..+++++.
T Consensus 191 ~~~~~~~~~~g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~--------------------~~~~~~~s~~~~ 249 (446)
T 2x3l_A 191 QGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEY--------------------LSYFQTSSPSYL 249 (446)
T ss_dssp TTSCCCGGGGTCSEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHH--------------------HHHHSCSSCCHH
T ss_pred CCCCCChHHcCCCEEEECCccccccccccEEEEEcCCcCC-HHHHHHH--------------------HHHHcCCCchHH
Confidence 4444455789999999997766889999999988654 2111100 123557788998
Q ss_pred HHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 334 AIISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.++++.++++++...+.. . ++..++++++.+. . ++++.+.. +..+++.+++ ++..
T Consensus 250 ~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~--g---------~~~~~~~~-------~~~l~i~~~~-----~~~~ 306 (446)
T 2x3l_A 250 IMASLESAAQFYKTYDSTLFFAKRAQLIECLENK--G---------FEMLQVDD-------PLKLLIKYEG-----FTGH 306 (446)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--T---------CEEEECSS-------TTEEEEECTT-----SCHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc--C---------CEECcCCC-------CeEEEEEeCC-----cCHH
Confidence 888888888888876544 3 6777777766665 2 34444322 3456666652 2334
Q ss_pred HHHHhhhcCCcEec-cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 412 EVQNLANLKKIQLR-TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 412 ~v~~~l~~~gI~v~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
++.+.|.++||.++ .| .+++|++++.++|++++ +++++
T Consensus 307 ~l~~~L~~~GI~v~~~g----------------------------------------~~~iRi~~~~~~t~e~i-~l~~a 345 (446)
T 2x3l_A 307 DIQNWFMNAHIYLELAD----------------------------------------DYQALAILPLWHHDDTY-LFDSL 345 (446)
T ss_dssp HHHHHHHHTTEEESEEC----------------------------------------SSCEEEECCCCCTTCCC-CHHHH
T ss_pred HHHHHHHHCCCEEEecC----------------------------------------CCEEEEEeecCCCHHHH-HHHHH
Confidence 58888888899986 32 15799999999999999 99999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
|++++.
T Consensus 346 L~~~~~ 351 (446)
T 2x3l_A 346 LRKIED 351 (446)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 999753
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=223.82 Aligned_cols=338 Identities=14% Similarity=0.095 Sum_probs=210.6
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+ . .... .+++++.+++++|.+ + +++++|+|+|+.+++.++..++|| |
T Consensus 15 ~~~~~~~a~~~~~~~~~~-~------~~~~----~~~l~~~la~~~~~~--~--~i~~~sgt~al~~~l~~l~~~~gd~V 79 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNWF-I------LGDE----DKKFEQEFADYCNVN--Y--CIGCGNGLDALHLILKGYDIGFGDEV 79 (373)
T ss_dssp HHHHHHHHHHHHHHHTCC-S------SSHH----HHHHHHHHHHHHTSS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHCCCc-c------CCch----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 345666666665543322 1 1233 889999999999985 3 899999999999999999338998 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .+++++ +..++++.+++++ ++++++|+ ++|+||...|+++|.++|+
T Consensus 80 i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~---~~n~~G~~~~l~~i~~l~~- 148 (373)
T 3frk_A 80 IVPSNTFIATALAVSYTGAKPIFVEPDIRTYNIDPSLIESAI-------TEKTKAII---AVHLYGQPADMDEIKRIAK- 148 (373)
T ss_dssp EEETTSCTHHHHHHHHHSCEEEEECEETTTTEECGGGTGGGC-------CTTEEEEE---EECCTTCCCCHHHHHHHHH-
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEeccccccCcCHHHHHHhc-------CCCCeEEE---EECCCcCcccHHHHHHHHH-
Confidence 999999998776554443222 444442 3456777776644 45788888 6789999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC--CcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCce
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ--PDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGGT 304 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~--~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~ 304 (815)
++|+++|+|++|+.|.. .+....+ .|++++||+ |+++++...|+++.+++ +.+.+++...++..
T Consensus 149 ----------~~~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~ 217 (373)
T 3frk_A 149 ----------KYNLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSE 217 (373)
T ss_dssp ----------HHTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCS
T ss_pred ----------HcCCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcc
Confidence 89999999999998765 4444445 799999966 99983233567776654 44444433322221
Q ss_pred EEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
. .+ .....|. .....+.+ ..++..+.......++.+++++++.+.|.++ + +.+...
T Consensus 218 ~-------~~--------~~~~~g~~~~~~~~~a-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~-~~~~~~ 274 (373)
T 3frk_A 218 K-------KY--------HHIYKGFNSRLDELQA-GFLRVKLKYLDKWNEERRKIAQKYIAGINNP------N-VIIPVE 274 (373)
T ss_dssp B-------TT--------BCCSCCCBCCCCHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHCCCT------T-EECCCC
T ss_pred c-------CC--------ccccccccCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------c-eEeccC
Confidence 0 00 0111121 11111111 1122222222222377888888888888877 4 555432
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
.. .....+..|.+...+ ..++.+.|.++||.++.+. +|.+.. ..++......
T Consensus 275 ~~----~~~~~~~~~~~~~~~-----~~~l~~~L~~~gI~v~~~~~~~~~~~~~~--~~~~~~~~~~------------- 330 (373)
T 3frk_A 275 AD----YAKHVWYTFVIRSEK-----RDELQKYLNNNGIGTLIHYPIPIHLQQAY--KDLGFKTGNF------------- 330 (373)
T ss_dssp CT----TEECCCSSEEEEESS-----HHHHHHHHHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSS-------------
T ss_pred CC----CCceeeEEEEEEeCC-----HHHHHHHHHHCCCCcccCcCCccccChHH--HhcCCCCCCC-------------
Confidence 21 122333334443322 3458899999999999764 222211 1122211000
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
...+....+.+|+|++.++|++||++++++|+++.
T Consensus 331 -~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~ 365 (373)
T 3frk_A 331 -PIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWK 365 (373)
T ss_dssp -HHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 00000113789999999999999999999998754
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=224.69 Aligned_cols=318 Identities=14% Similarity=0.095 Sum_probs=219.9
Q ss_pred cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.++.+.+++.+.+.........+. ...... .+++++++++++|.+. .+++ +++++|+..++.++. ++||
T Consensus 74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~----~~~l~~~la~~~g~~~---~i~~-~sGt~a~~~~l~~~~-~~gd 144 (409)
T 3kki_A 74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYD----KPMIEKRLAKFTGFDE---CLLS-QSGWNANVGLLQTIC-QPNT 144 (409)
T ss_dssp TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTT----SCHHHHHHHHHHTCSE---EEEE-SCHHHHHHHHHHHHC-CTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCCccccccCCcHH----HHHHHHHHHHHhCCCe---EEEe-cchHHHHHHHHHHhc-CCCC
Confidence 357788888777654211111111 122233 6789999999999864 2555 555799999999997 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
|++....|+++.......+.. .++++. .++++++++++ ..++++|++++++||||.+.|+++|.++|+
T Consensus 145 ~Vl~~~~~~~~~~~~~~~~g~~-~~~~~~---~d~~~le~~l~------~~~~~~vi~~~~~nptG~~~~l~~l~~la~- 213 (409)
T 3kki_A 145 NVYIDFFAHMSLWEGARYANAQ-AHPFMH---NNCDHLRMLIQ------RHGPGIIVVDSIYSTLGTIAPLAELVNISK- 213 (409)
T ss_dssp EEEEETTSCHHHHHHHHHTTCE-EEEECT---TCHHHHHHHHH------HHCSCEEEEESBCTTTCCBCCHHHHHHHHH-
T ss_pred EEEECCCcCHHHHHHHHHcCCe-EEEecC---CCHHHHHHHHH------hcCCeEEEECCCCCCCCCcCCHHHHHHHHH-
Confidence 888888998876655443221 344332 34555655443 124799999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCC---------CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM---------LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~---------~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
++|+++|+|++++.+... .++ ..++|+++.|++|+|+ +. .|+++.++++++.+.....
T Consensus 214 ----------~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~-~~-gg~v~~~~~~~~~~~~~~~ 280 (409)
T 3kki_A 214 ----------EFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFA-YR-AGAIWCNNEVNRCVPFISY 280 (409)
T ss_dssp ----------HHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTC-SS-CEEEEESSSGGGTHHHHCH
T ss_pred ----------HcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhC-CC-ceEEEECHHHHHHHHHhCc
Confidence 899999999999765421 111 1257899999999999 43 4999998887765432110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
. ....++.+...+.++.++++.+.......++..++++++.+.|+++ ++++
T Consensus 281 ~----------------------~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~ 331 (409)
T 3kki_A 281 P----------------------AIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-------GLTI 331 (409)
T ss_dssp H----------------------HHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-------TCCC
T ss_pred C----------------------ccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-------CCcc
Confidence 0 0112345667777888888887665333378899999999999887 4444
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
.+ .++++.+.++... +..++.+.|.++||.+++++++..+
T Consensus 332 ~~---------~~~~~~~~~~~~~----~~~~~~~~L~~~Gv~v~~~~~~~~~--------------------------- 371 (409)
T 3kki_A 332 RS---------ESQIIGLETGDER----NTEKVRDYLESNGVFGSVFCRPATS--------------------------- 371 (409)
T ss_dssp CC---------SSSEEEEEEESHH----HHHHHHHHHHHTTEECEEECTTSSC---------------------------
T ss_pred CC---------CCCEEEEEeCCHH----HHHHHHHHHHHCCceEeeeCCCCcC---------------------------
Confidence 31 2678888876421 1234777888889998764332110
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...+++|++++.+++++|+++++++|++++..
T Consensus 372 -----~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 372 -----KNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp -----TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 11489999999999999999999999998754
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=224.84 Aligned_cols=318 Identities=10% Similarity=0.018 Sum_probs=208.9
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhH----cCC---CCC-ceeEEecCCchhhHHHHHhhh
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQY----FNT---DSD-HYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~----~g~---~~~-~~~iv~t~g~t~al~~~~~al 144 (815)
.++.+.+++.+.+. ....++.. .. ..++|+.++++ +|. +++ + |++|+|+++|+.+++.++
T Consensus 44 ~~~~v~~a~~~~~~-~~~~y~~~-----~g----~~~lr~~la~~l~~~~g~~~~~~~~~--i~~t~g~~~al~~~~~~~ 111 (396)
T 3jtx_A 44 TPKVITDALTASLH-ELEKYPLT-----AG----LPELRQACANWLKRRYDGLTVDADNE--ILPVLGSREALFSFVQTV 111 (396)
T ss_dssp CCHHHHHHHHHTGG-GGGSCCCT-----TC----CHHHHHHHHHHHHHHTTTCCCCTTTS--EEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhh-hccCCCCC-----CC----cHHHHHHHHHHHHHhcCCCCCCCCCe--EEEcCCcHHHHHHHHHHH
Confidence 45677777766553 22223321 11 34455555554 474 466 6 999999999999999999
Q ss_pred ccCCC-----c-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 145 EFNEG-----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 145 ~~~~g-----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
. ++| | |++....|+++.......+... .++++.++ ..+++.++++++ +++++|++++++||||.
T Consensus 112 ~-~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~-------~~~~~v~l~~p~nptG~ 183 (396)
T 3jtx_A 112 L-NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW-------KRTKLVFVCSPNNPSGS 183 (396)
T ss_dssp C-CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH-------HTEEEEEEESSCTTTCC
T ss_pred h-CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc-------cCcEEEEEECCCCCCCC
Confidence 7 785 6 8888888877655444433222 56664433 356667766443 47899999999999999
Q ss_pred ccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC----CCCCC--------CCCCCcEEEEccccccccCCc
Q psy16512 217 KYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDL--------KQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 217 ~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl--------~~~~~D~vv~S~~K~~g~p~G 281 (815)
++|.++ |.++|+ ++|+++|+|++++... .+... ...+.++++.|+||.|+ .+|
T Consensus 184 ~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G 251 (396)
T 3jtx_A 184 VLDLDGWKEVFDLQD-----------KYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSN-VPG 251 (396)
T ss_dssp CCCHHHHHHHHHHHH-----------HHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSS-CGG
T ss_pred cCCHHHHHHHHHHHH-----------HcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccC-Ccc
Confidence 999888 555555 8999999999987532 12221 02467899999999888 446
Q ss_pred --ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHH
Q psy16512 282 --LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELS 359 (815)
Q Consensus 282 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~ 359 (815)
+|+++.++++++.+.... ....++.+.++..++.++++.........++..+++
T Consensus 252 ~r~G~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (396)
T 3jtx_A 252 LRSGFVAGDAELLKNFLLYR------------------------TYHGSAMSIPVQRASIAAWDDEQHVIDNRRLYQEKF 307 (396)
T ss_dssp GCCEEEEECHHHHHHHHHHH------------------------HHHTCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHHH------------------------hhcccCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 799998887766553211 122346777777777777754222212226777778
Q ss_pred HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhh
Q psy16512 360 QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRF 438 (815)
Q Consensus 360 ~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~ 438 (815)
+++.+.|.++ +.+..+. .+.++++.++.. +..++.+.| +++||.+.+|..|......
T Consensus 308 ~~l~~~l~~~--------~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~~~~~~~~-- 365 (396)
T 3jtx_A 308 ERVIPILQQV--------FDVKLPD-------ASFYIWLKVPDG-----DDLAFARNLWQKAAIQVLPGRFLARDTEQ-- 365 (396)
T ss_dssp HHHHHHHTTT--------SCCCCCS-------SSSEEEEECTTS-----CHHHHHHHHHHHHCEECEEGGGGCCCCTT--
T ss_pred HHHHHHHHhc--------CCccCCC-------eeEEEEEECCCC-----CHHHHHHHHHHHCCEEEeCChHhCCcccc--
Confidence 8888888664 1222222 256777777642 223456656 6789999999876542110
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.....+++|||++. +++++++++++|.+++
T Consensus 366 -------------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 366 -------------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp -------------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred -------------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 01124899999985 8999999999998864
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=221.37 Aligned_cols=324 Identities=11% Similarity=0.049 Sum_probs=211.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.++|+.......++.+.+++.+.+.. . ...+..... .+++++++++++| .+. ++++|+|+|+|+.+++
T Consensus 9 ~id~~~~~~~~~~~~v~~a~~~~~~~----~-~~~~~~~~~----~~~l~~~la~~~g-~~~--~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 9 ALGFSSDNIAGASPEVAQALVKHSSG----Q-AGPYGTDEL----TAQVKRKFCEIFE-RDV--EVFLVPTGTAANALCL 76 (356)
T ss_dssp CCBCSCGGGCCCCHHHHHHHHHTTSS----C-CCSTTCSHH----HHHHHHHHHHHHT-SCC--EEEEESCHHHHHHHHH
T ss_pred eEeeccCCccCCCHHHHHHHHhhccC----c-ccccccchH----HHHHHHHHHHHhC-CCC--cEEEeCCccHHHHHHH
Confidence 35566655566778888887665321 0 111222344 7899999999999 433 4999999999999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhH--HHHhhccc--eEEcCc-hhhhcchhhhh-hhhhhhhhcCCCccEEEEecccCCC
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGM--RELVKTNQ--IYSFSV-DDARNMLNEFK-ESQENVENMRHSNSLFVYPAESNFS 214 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~--~~~~~~~g--~v~~~~-~~~~~~~~~~~-~l~~~~~~~~~~t~lv~i~~~~n~t 214 (815)
.++. ++|| |++....|++.+.. ...... | .+.++. ++.++++.+++ +++.......+++++|++++++| |
T Consensus 77 ~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~-g~~~~~v~~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-t 153 (356)
T 1v72_A 77 SAMT-PPWGNIYCHPASHINNDECGAPEFFSN-GAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-V 153 (356)
T ss_dssp HTSC-CTTEEEEECTTSHHHHSSTTHHHHHTT-SCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-T
T ss_pred HHhc-CCCCEEEEcCccchhhhhchHHHHHhC-CcEEEEecCCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-C
Confidence 9987 8999 88888788776544 333210 3 333332 24456666665 44300000112689999999876 9
Q ss_pred ccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc------CCCCCCCC-CCCCcEEEEccccccccCCcceE
Q psy16512 215 GTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC------GSNMLDLK-QHQPDFISISFYKMFGYPTGLGA 284 (815)
Q Consensus 215 G~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~------g~~~~dl~-~~~~D~vv~S~~K~~g~p~G~G~ 284 (815)
|.++|. ++|.++|+ ++|+++|+|++++. +..+..+. ..+.|++++|+||+ |+|.|.|+
T Consensus 154 G~~~~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~ 221 (356)
T 1v72_A 154 GSIYTLDEIEAIGDVCK-----------SSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAI 221 (356)
T ss_dssp SCCCCHHHHHHHHHHHH-----------HTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEE
T ss_pred CccCCHHHHHHHHHHHH-----------HcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEE
Confidence 997765 45666666 89999999998763 22221111 13678999999999 55878889
Q ss_pred EEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh-hhh-HHHHHHHHHHH
Q psy16512 285 LIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKS-FTNAFELSQYT 362 (815)
Q Consensus 285 l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~-~~~~~~l~~~l 362 (815)
+++++++++.+..... ..|+.......++..+++.+... ... .++..++++++
T Consensus 222 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 276 (356)
T 1v72_A 222 VLFNTSLATEMSYRRK-------------------------RAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRL 276 (356)
T ss_dssp EESSGGGHHHHHHHHH-------------------------HTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHhhHHHHhh-------------------------ccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 9888887665432110 01111111223333334433321 011 26778889999
Q ss_pred HHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCC
Q psy16512 363 YFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLS 442 (815)
Q Consensus 363 ~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~ 442 (815)
.+.|+++ +++++..+.. ++++++.++. ++.+.|.++||.+++|.+ .
T Consensus 277 ~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~---------~~~~~l~~~gi~v~~g~~-~----------- 322 (356)
T 1v72_A 277 AQGLEGL------GGVEVLGGTE-------ANILFCRLDS---------AMIDALLKAGFGFYHDRW-G----------- 322 (356)
T ss_dssp HHHHTTC------TTEEEESCCC-------SSEEEEEECH---------HHHHHHHHTTCBCBCSSS-S-----------
T ss_pred HHHHhhC------CCcEEccCCC-------ccEEEEEcCH---------HHHHHHHhcCeEEecccc-C-----------
Confidence 9999887 6888875543 6777777642 377778889999987641 1
Q ss_pred HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 443 DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+++++.++++++++++++|++++.
T Consensus 323 -------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 351 (356)
T 1v72_A 323 -------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAAD 351 (356)
T ss_dssp -------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred -------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999998754
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=229.21 Aligned_cols=322 Identities=10% Similarity=0.002 Sum_probs=212.0
Q ss_pred cchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 73 YSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.++.+.+++.+.+... ....+ .... ..++++.+++++ | .++++ |++|+|+++|+.+++.++.
T Consensus 71 ~~~~v~~a~~~~~~~~~~~~Y~-----~~~g----~~~lr~~ia~~l~~~~g~~~~~~~--v~~t~G~~~al~~~~~~l~ 139 (447)
T 3b46_A 71 PPQFAIKEAQKALDIPMVNQYS-----PTRG----RPSLINSLIKLYSPIYNTELKAEN--VTVTTGANEGILSCLMGLL 139 (447)
T ss_dssp CCHHHHHHHHHHTTSGGGGSCC-----CTTC----CHHHHHHHHHHHTTTTTSCCCGGG--EEEESHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCcCCCCCC-----CCCC----CHHHHHHHHHHHHHhcCCCCChhh--EEEeCCHHHHHHHHHHHHc
Confidence 4566777776665431 11111 1112 456777777765 4 34455 9999999999999999997
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch------------hhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD------------DARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~------------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++|| |++....|+++.......+... .++++.+ ...+++.+++++ .+++++|++++++
T Consensus 140 -~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l-------~~~~~~v~l~~p~ 211 (447)
T 3b46_A 140 -NAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI-------TSKTKAVIINTPH 211 (447)
T ss_dssp -CTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTC-------CTTEEEEEEESSC
T ss_pred -CCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhh-------ccCCeEEEEeCCC
Confidence 8999 8888888887766554443322 4555432 245666665533 4679999999999
Q ss_pred CCCccccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC-----CCCcEEEEccccccccCC
Q psy16512 212 NFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ-----HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 212 n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~-----~~~D~vv~S~~K~~g~p~ 280 (815)
||||.++| +++|.++|+ ++|+++|+|+++.... ....+.. .+.++++.|+||+|+ ++
T Consensus 212 nptG~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~-~~ 279 (447)
T 3b46_A 212 NPIGKVFTREELTTLGNICV-----------KHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFA-AT 279 (447)
T ss_dssp TTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTT-CT
T ss_pred CCCCcccCHHHHHHHHHHHH-----------HcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcC-Cc
Confidence 99999987 445566666 8999999999987522 1122222 367899999999998 66
Q ss_pred c--ceEEEE-ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH--hhhhhH-HH
Q psy16512 281 G--LGALIV-KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME--KKRKSF-TN 354 (815)
Q Consensus 281 G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~--~~~~~~-~~ 354 (815)
| +|++++ ++++++.+.... .....+.+.+...++.++++... .....+ ++
T Consensus 280 G~riG~~~~~~~~l~~~l~~~~------------------------~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~ 335 (447)
T 3b46_A 280 GWRIGWVLSLNAELLSYAAKAH------------------------TRICFASPSPLQEACANSINDALKIGYFEKMRQE 335 (447)
T ss_dssp TSCCEEEECSCHHHHHHHHHHH------------------------HHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhEEEEeCCHHHHHHHHHHH------------------------hhccCCCChHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 8 899999 777765543211 11223556677777777777642 211222 78
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CC--------ccCHHHHHHhh-hcCCc
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GT--------YYGYSEVQNLA-NLKKI 422 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~--------~~~~~~v~~~l-~~~gI 422 (815)
.+++++++.+.|+++ ++++..+.. +.++++.++... .. ..+..++.+.| .++||
T Consensus 336 ~~~~~~~l~~~L~~~-------g~~~~~~~~-------g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV 401 (447)
T 3b46_A 336 YINKFKIFTSIFDEL-------GLPYTAPEG-------TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGV 401 (447)
T ss_dssp HHHHHHHHHHHHHHH-------TCCEECCSB-------SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHC-------CCeecCCCe-------eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCE
Confidence 888999999999887 455554432 567777775420 00 01223466555 57899
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.+.+|..|...... ....+++|+|++. ++++++++++.|.+
T Consensus 402 ~v~pg~~f~~~~~~----------------------------~~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 402 VAIPPTEFYIKEHE----------------------------KAAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp ECBCGGGGSCGGGG----------------------------GGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred EEECchHhCCCCcc----------------------------CCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 99988654322110 0013789999984 89999999999977
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-23 Score=224.14 Aligned_cols=324 Identities=12% Similarity=0.078 Sum_probs=202.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
.++|+.+....+++.+.+++.+.... ...+..... ..++++++++++|.+ + +++++|+++|+.+++
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~~------~~~y~~~~~----~~~l~~~la~~~g~~--~--~~~~~~gt~a~~~~~ 70 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEVG------DDVYGEDPT----INELERLAAETFGKE--A--ALFVPSGTMGNQVSI 70 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCCC------CGGGTCCHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCCC------CcccCCChH----HHHHHHHHHHHhCCc--e--EEEecCcHHHHHHHH
Confidence 46777777777667766666432110 011111223 778999999999985 2 788888899999999
Q ss_pred hhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-cc
Q psy16512 142 EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GT 216 (815)
Q Consensus 142 ~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~ 216 (815)
.++. ++|| |+++..+|.+.+.....+...| .+.+. .++.++++.++++++.. ....++|++|++++++||| |.
T Consensus 71 ~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~d~~~l~~~i~~~-~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 71 MAHT-QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPR-NIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp HHHC-CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCS-CTTSCCEEEEEEESSBTTTTSB
T ss_pred HHhc-CCCCEEEEcCcchhhhccccchhhccCeEEEEecCCCCccCHHHHHHHhccc-cccccCceEEEEeccccccCCc
Confidence 8887 8999 8888888877554222333334 33332 23345666666544200 0001268999999999999 99
Q ss_pred ccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC---CCCCCCC--CCCcEEEEccccccccCCcce-EEEE
Q psy16512 217 KYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLDLKQ--HQPDFISISFYKMFGYPTGLG-ALIV 287 (815)
Q Consensus 217 ~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~dl~~--~~~D~vv~S~~K~~g~p~G~G-~l~~ 287 (815)
++|.++ |.++|+ ++|+++++|+++..+. ...+... ...|.+++|+||++++| +| +++.
T Consensus 149 ~~~~~~l~~i~~~a~-----------~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~--~G~~~~~ 215 (347)
T 1jg8_A 149 VVPLENIKEICTIAK-----------EHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP--VGSVVVG 215 (347)
T ss_dssp CCCHHHHHHHHHHHH-----------HHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS--SCEEEEE
T ss_pred cCcHHHHHHHHHHHH-----------HCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC--ceEEEEc
Confidence 999765 556666 8999999999874421 1122211 25788889999999955 45 4556
Q ss_pred ecccccccCcccccCceEEEEecCCcccccccCccccccCCCC--ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q psy16512 288 KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV--NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFY 365 (815)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~--~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~ 365 (815)
++++++.+..... ...++. +.....+...+++ .....+++..+.++++.+.
T Consensus 216 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~l~~~ 268 (347)
T 1jg8_A 216 DRDFIERARKARK------------------------MLGGGMRQAGVLAAAGIIALT---KMVDRLKEDHENARFLALK 268 (347)
T ss_dssp CHHHHHHHHHHHH------------------------HHTCCCSSTHHHHHHHHHHHH---HSSTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH------------------------HcCCchhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 6666554422110 001111 1122222223333 2222234445677888888
Q ss_pred HHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 366 FKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 366 L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
|+++ ++++..+ ...++++++.++.. ..+..++.+.|.++||.++++.
T Consensus 269 L~~~-------~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~----------------- 315 (347)
T 1jg8_A 269 LKEI-------GYSVNPE------DVKTNMVILRTDNL---KVNAHGFIEALRNSGVLANAVS----------------- 315 (347)
T ss_dssp HHHH-------TCBCCGG------GCCSSEEEEECTTS---SSCHHHHHHHHHHHTEECEEEE-----------------
T ss_pred HHhc-------CceeccC------CCcceEEEEEcccc---cCCHHHHHHHHHHCCCEEecCC-----------------
Confidence 8776 3333211 12367788877531 1234467888888999987531
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|++++.+++++|+++++++|++++.
T Consensus 316 ----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 316 ----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp ----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 26799999999999999999999998764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=225.19 Aligned_cols=303 Identities=11% Similarity=0.052 Sum_probs=199.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhH--HHHHhhhccC--C----------Cc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAI--KTVSEYFEFN--E----------GS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al--~~~~~al~~~--~----------gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.+++++++++++ |++|+|+++++ .+++.++. . + || |++..+.|+++....+.++..
T Consensus 80 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~ 156 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQ--VLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFE 156 (427)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHHhCCCcce--EEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCE
Confidence 788999999999999887 99999999999 58888876 4 5 88 888888887765554444332
Q ss_pred c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEe-cccCCCccccChHHHHHHhhcccccccccc-CCCCeEEEEe
Q psy16512 172 Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYP-AESNFSGTKYPLSWCNTVHRNHVFKKHFKC-SRSNCFVLLD 248 (815)
Q Consensus 172 g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~-~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~-~~~gi~vivD 248 (815)
. .++++.++ ++++.++++++ .+++++|++. +++||||.++|.+++.++++ .| +++|+++|+|
T Consensus 157 ~~~v~~~~~g-~d~~~l~~~l~------~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~--------~a~~~~~~~ii~D 221 (427)
T 3ppl_A 157 MISVPMNEDG-PDMDAVEELVK------NPQVKGMWVVPVFSNPTGFTVTEDVAKRLSA--------METAAPDFRVVWD 221 (427)
T ss_dssp EEEEEEETTE-ECHHHHHHHTT------STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--------CCCSSTTCEEEEE
T ss_pred EEEeCCCCCC-CCHHHHHHHHh------cCCCeEEEECCCCCCCCCccCCHHHHHHHHH--------HHhhcCCCEEEEE
Confidence 2 56666544 67777665442 3568888865 89999999999996666665 44 5999999999
Q ss_pred cccccCC------CCCCCC-------CCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcc
Q psy16512 249 AATYCGS------NMLDLK-------QHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 249 ~a~~~g~------~~~dl~-------~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
++++... .++++. ..+.++++.|+||+++ | -++||++.++++++.+....
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G~r~G~~~~~~~l~~~~~~~~--------------- 285 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHA--------------- 285 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TTSSCEEEECCHHHHHHHHHHH---------------
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccC-cCccEEEEEcCHHHHHHHHHHh---------------
Confidence 9986421 111221 3356789999999954 5 24899999887766553221
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHHHH---Hh-hhhhHHHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EK-KRKSFTNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~-~~~~~~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~ 389 (815)
.....+.+.....++..+++.. .. +....+++.+.++.+.+.|.+ +. +.+++.+..+..
T Consensus 286 ---------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~---~~~~~~~~~p~~---- 349 (427)
T 3ppl_A 286 ---------GIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLA---EYGVAQWTVPAG---- 349 (427)
T ss_dssp ---------HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG---GGTCCEECCCSB----
T ss_pred ---------hcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCceEEeCCCc----
Confidence 1112234555555554544431 11 111114445555555555543 10 002466655543
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.++..+ ..++.+.|.++||.+++|..|..... ....+
T Consensus 350 ---g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~-----------------------------~~~~~ 392 (427)
T 3ppl_A 350 ---GYFISLDVVPGT-----ASRVAELAKEAGIALTGAGSSYPLRQ-----------------------------DPENK 392 (427)
T ss_dssp ---SSCEEEECSTTC-----HHHHHHHHHHTTEECCCTTTTSGGGC-----------------------------CTTSC
T ss_pred ---cEEEEEECCcch-----HHHHHHHHHHCCCEEecCcCcCCCCC-----------------------------CCCCC
Confidence 778888886532 34578888999999998443322100 01148
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++.. +++++++++++|.+++.+
T Consensus 393 ~~Ris~~~~-~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 393 NLRLAPSLP-PVEELEVAMDGVATCVLL 419 (427)
T ss_dssp EEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCC-CHHHHHHHHHHHHHHHHH
Confidence 999999765 899999999999988754
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=220.52 Aligned_cols=301 Identities=11% Similarity=0.068 Sum_probs=201.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHH--HHHhhhccC--C---------Cc-EEEecCCCcchhhHHHHhhccc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIK--TVSEYFEFN--E---------GS-FIYLTDNHTSVLGMRELVKTNQ 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~--~~~~al~~~--~---------gd-vv~~~~~h~s~~~~~~~~~~~g 172 (815)
..++|+.+++++++++++ |++|+|+++++. +++.++. . + || |++..+.|+.+.......+...
T Consensus 72 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 148 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAEN--VLVWNNSSLELQGLVLTFALL-HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFEL 148 (423)
T ss_dssp CHHHHHHHHHHTTSCGGG--EEECSSCHHHHHHHHHHHHHH-TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHhCCChhh--EEEeCCcHHHHHHHHHHHHHh-ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEE
Confidence 678999999999998887 999999999998 8888887 5 6 57 8888888877665554443332
Q ss_pred -eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE-ecccCCCccccChHHHHHHhhcccccccccc-CCCCeEEEEec
Q psy16512 173 -IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY-PAESNFSGTKYPLSWCNTVHRNHVFKKHFKC-SRSNCFVLLDA 249 (815)
Q Consensus 173 -~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i-~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~-~~~gi~vivD~ 249 (815)
.++++.+ .++++.++++++ ..+++++|++ ++++||||.++|.+++.++++ .| +++|+++|+|+
T Consensus 149 ~~v~~~~~-g~d~~~l~~~l~-----~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~--------~a~~~~~~~li~De 214 (423)
T 3ez1_A 149 LTVDMQSD-GPDVDAVERLAG-----TDPSVKGILFVPTYSNPGGETISLEKARRLAG--------LQAAAPDFTIFADD 214 (423)
T ss_dssp EEEEEETT-EECHHHHHHHHH-----SCTTEEEEEECSSSCTTTCCCCCHHHHHHHHT--------CCCSSTTCEEEEEC
T ss_pred EeccCCCC-CCCHHHHHHHHh-----hCCCceEEEECCCCCCCCCcCCCHHHHHHHHH--------HHHhccCCEEEEEC
Confidence 5566554 367777766441 1357888875 589999999999997777766 55 59999999999
Q ss_pred ccccCC-------CCCCC-------CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCccc
Q psy16512 250 ATYCGS-------NMLDL-------KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 250 a~~~g~-------~~~dl-------~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
++.... .+.++ ...+.++++.|+||+++...++|++++++++++.+....
T Consensus 215 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~---------------- 278 (423)
T 3ez1_A 215 AYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYL---------------- 278 (423)
T ss_dssp TTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHH----------------
T ss_pred CcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHH----------------
Confidence 987321 11111 133567899999997442235899999988776553221
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHH-H----HhhhhhHHHHHHHHHHHHHHH----HhccccCCCC-cEEEcCCCC
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDT-M----EKKRKSFTNAFELSQYTYFYF----KQLSYSNGQP-LVELYHDTD 385 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~-l----~~~~~~~~~~~~l~~~l~~~L----~~l~~~~~~p-~~~l~~~~~ 385 (815)
.....+.+.....++..+++. . ..+....+.+.+.++.+.+.| ..+ + ++++..+..
T Consensus 279 --------~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~~~~~p~~ 344 (423)
T 3ez1_A 279 --------GAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEG------GEYATWTLPKG 344 (423)
T ss_dssp --------HHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------TSSEEECCCSB
T ss_pred --------hhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC------CCceEEeCCCc
Confidence 111234555555555555554 1 111111133334444444444 333 3 377765543
Q ss_pred CCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 386 YGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 386 ~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+.++++.++..+ ...+.+.|.++||.+++ |.+|..+.
T Consensus 345 -------g~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~~g~~~~~~~------------------------------ 382 (423)
T 3ez1_A 345 -------GYFISLDTAEPV-----ADRVVKLAEAAGVSLTPAGATYPAGQ------------------------------ 382 (423)
T ss_dssp -------SSCEEEEESSSC-----HHHHHHHHHHTTEECCCTTTTSSTTC------------------------------
T ss_pred -------cEEEEEECCCCc-----HHHHHHHHHHCCcEEecCcccccCCC------------------------------
Confidence 678888886532 34588889999999998 65553210
Q ss_pred CCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|||++.. +++++++++++|.+++.+
T Consensus 383 ~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 383 DPHNRNLRLAPTRP-PVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CSSSCEEEECCSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHH
Confidence 01248999999866 899999999999998754
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=227.01 Aligned_cols=319 Identities=11% Similarity=0.031 Sum_probs=207.5
Q ss_pred HHHHHHHHHhHcCCCCC-------ceeEEecCCchhhHHHHHhhhccC--C------C---------c--EEEecCCCcc
Q psy16512 107 IDQMRTKILQYFNTDSD-------HYSVIFTSGATSAIKTVSEYFEFN--E------G---------S--FIYLTDNHTS 160 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~-------~~~iv~t~g~t~al~~~~~al~~~--~------g---------d--vv~~~~~h~s 160 (815)
.+++++++++++|++.+ ...+++|+|+|+|+.+++.++... + | + ++++...|++
T Consensus 115 e~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s 194 (486)
T 1js3_A 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSS 194 (486)
T ss_dssp HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHH
T ss_pred HHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHH
Confidence 56788999999999753 124899999999999888776411 0 2 4 6678889998
Q ss_pred hhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccC
Q psy16512 161 VLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS 239 (815)
Q Consensus 161 ~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~ 239 (815)
+.......+... .++++.++.++++.++++|+.-. .....+.+|++++++|+||.+.|+++|+++|+
T Consensus 195 ~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~-~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~----------- 262 (486)
T 1js3_A 195 VERAGLIGGVKLKAIPSDGKFAMRASALQEALERDK-AAGLIPFFVVATLGTTSCCSFDNLLEVGPICH----------- 262 (486)
T ss_dssp HHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHH-HTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------
T ss_pred HHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHH-hCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH-----------
Confidence 876666554332 66666666788888888664110 00111359999999999999999999999999
Q ss_pred CCCeEEEEecccccCCCCC-CCCC-----CCCcEEEEccccccccCCcceEEEEeccc--ccccC--cccccCceEEEEe
Q psy16512 240 RSNCFVLLDAATYCGSNML-DLKQ-----HQPDFISISFYKMFGYPTGLGALIVKQKS--AHVLN--KTFYGGGTVKISM 309 (815)
Q Consensus 240 ~~gi~vivD~a~~~g~~~~-dl~~-----~~~D~vv~S~~K~~g~p~G~G~l~~~~~~--~~~l~--~~~~g~~~~~~~~ 309 (815)
++|+++|+|++++.+.... +... .++|++++|+||+++.|.|+|+++++++. .+.+. +.+..+..... .
T Consensus 263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~-~ 341 (486)
T 1js3_A 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS-G 341 (486)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------C-C
T ss_pred HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccc-c
Confidence 8999999999998765432 2211 25899999999999988899999998753 23332 22221111000 0
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~ 387 (815)
...++. ....+.+. .+ ..+++.+++..+...+. ..++..++++++.+.|+++ |+++++.+.
T Consensus 342 ~~~~~~------~~~~~~~r-r~-~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~~~~~~~~~--- 404 (486)
T 1js3_A 342 LITDYR------HWQLPLGR-RF-RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEV--- 404 (486)
T ss_dssp SCCCGG------GSSSCSCC-CC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCC---
T ss_pred CCCCcc------ccCCCCCC-ch-hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEeCCC---
Confidence 000000 00011111 11 23445555555433221 2388889999999999998 799998643
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
..++++|.+...+ .++ .++.+.|.++|+.+..+.. ++ +
T Consensus 405 ----~~~~v~f~~~~~~--~~~-~~l~~~L~~~g~~~~~~~~---------~~------------------------~-- 442 (486)
T 1js3_A 405 ----TLGLVCFRLKGSD--GLN-EALLERINSARKIHLVPCR---------LR------------------------G-- 442 (486)
T ss_dssp ----CSSEEEEEESSCH--HHH-HHHHHHHHHHTSCBCEEEE---------ET------------------------T--
T ss_pred ----ceeEEEEEecChH--HHH-HHHHHHHHhcCCEEEEEEE---------EC------------------------C--
Confidence 2678999876321 111 3467777777865432211 00 0
Q ss_pred ceEEEEec-cCCCCHHHHHHHHHHHHHHHhh
Q psy16512 468 TGSIRISY-GHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 468 ~g~iRvs~-g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+++ +.++|++||++++++|++++.+
T Consensus 443 ~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 443 QFVLRFAICSRKVESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 37999997 6678999999999999987643
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=221.72 Aligned_cols=303 Identities=11% Similarity=0.018 Sum_probs=205.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++.++. ++|| ||++...|+++.... ..+...| ...++.+
T Consensus 68 ~~~l~~~la~~~g~~--~--~~~~~sGt~A~~~al~~~~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 139 (392)
T 3qhx_A 68 RTALEAALAAVEDAA--F--GRAFSSGMAAADCALRAML-RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALA--- 139 (392)
T ss_dssp HHHHHHHHHHHTTCS--E--EEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCC---
Confidence 889999999999986 2 7888899999999999886 8998 999999998776543 4445556 3444432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+... +...
T Consensus 140 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~-----------~~g~~li~D~~~~~~~~~-~~~~ 200 (392)
T 3qhx_A 140 DLDAVRA-------AIRPTTRLIWVETPTNPLLSIADIAGIAQLGA-----------DSSAKVLVDNTFASPALQ-QPLS 200 (392)
T ss_dssp CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTTCTTTC-CGGG
T ss_pred CHHHHHH-------hhCCCCeEEEEECCCCCCcEEecHHHHHHHHH-----------HcCCEEEEECCCcccccC-ChHH
Confidence 4455554 33468999999999999999999999999999 899999999999876432 2234
Q ss_pred CCCcEEEEccccccccCCc---ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG---LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G---~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
+++|+++.|+||++| ++| .|+++.++ ++.+.+.... .....+.+....+++
T Consensus 201 ~~~di~~~S~sK~lg-~~g~~~~G~v~~~~~~~~~~l~~~~------------------------~~~g~~~~~~~~~~~ 255 (392)
T 3qhx_A 201 LGADVVLHSTTKYIG-GHSDVVGGALVTNDEELDQSFAFLQ------------------------NGAGAVPGPFDAYLT 255 (392)
T ss_dssp GTCSEEEEETTTTTT-CSSCCCCEEEEESCHHHHHHHHHHH------------------------HHHCCCCCHHHHHHH
T ss_pred hCCcEEEEcCccccC-CCCCceEEEEEECcHHHHHHHHHHH------------------------HhcCCCCCHHHHHHH
Confidence 579999999999999 445 78888874 5544432211 111223444444444
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++.+. ..+++..+.++++.+.|.+. |.+. +..|...+.+ ...+++++|.+++.. .
T Consensus 256 ~~~l~~l~---~~~~~~~~~~~~l~~~L~~~------~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~---~ 323 (392)
T 3qhx_A 256 MRGLKTLV---LRMQRHSENAAAVAEFLAEH------PAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR---T 323 (392)
T ss_dssp HHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH---H
T ss_pred HhhhhHHH---HHHHHHHHHHHHHHHHHhcC------CCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH---H
Confidence 44444322 23466777788888888876 5553 3322210000 224789999997521 1
Q ss_pred CHHHHHHhhhcCCcEeccCccCCch---hhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPG---SCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~---~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
....+...|...+|.++.|..|+.. ....+.++..+ ..|..++.||+|+|.++++++++
T Consensus 324 ~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------------~~g~~~~~iRlSvg~e~~~~~i~ 385 (392)
T 3qhx_A 324 AAEQLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGS------------------QLEVPDDLVRLSVGIEDVADLLD 385 (392)
T ss_dssp HHHHHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTT------------------BCCCCTTEEEEECCSSCHHHHHH
T ss_pred HHHHHHHhCCCceECCCCCCCCceeeCcccccccccCHH------------------HcCCCCCeEEEEeccCCHHHHHH
Confidence 1234677788889999999876531 11111111100 12455689999999999999898
Q ss_pred HHHHHH
Q psy16512 486 YFLSFL 491 (815)
Q Consensus 486 ~lv~~L 491 (815)
.+.++|
T Consensus 386 ~l~~al 391 (392)
T 3qhx_A 386 DLKQAL 391 (392)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-22 Score=218.31 Aligned_cols=303 Identities=17% Similarity=0.200 Sum_probs=207.8
Q ss_pred hhhhhhhhccc-ccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHHHHHHhHcC---CCCCceeEEecCCchh
Q psy16512 61 DICYLDYTGAG-VYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN---TDSDHYSVIFTSGATS 135 (815)
Q Consensus 61 ~~iyLd~a~~~-~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g---~~~~~~~iv~t~g~t~ 135 (815)
..++|+.+... ..++.+.+++.+.+.. .....+. .. ..++|+.++++++ +++++ |++|+|+++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~~~~~~~~~~--v~~~~G~~~ 87 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNN--VSVGNGADE 87 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGG--EEEESSHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----hHHHHHHHHHHcCCCCCCHHH--EEEcCChHH
Confidence 45778877664 3567788877665521 1111111 12 7789999999999 77776 999999999
Q ss_pred hHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 136 AIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 136 al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
|+.+++.++ || |++. +.|+++....+..+... .++.+.+..++++.+ +++++|++++++||
T Consensus 88 al~~~~~~~----gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l------------~~~~~v~l~~p~np 150 (335)
T 1uu1_A 88 IIYVMMLMF----DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV------------GEGDVVFIPNPNNP 150 (335)
T ss_dssp HHHHHHHHS----SEEEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC------------CTTEEEEEESSCTT
T ss_pred HHHHHHHHh----CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc------------CCCCEEEEeCCCCC
Confidence 999999988 78 7777 77776654433322211 333333223333332 35899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC--CCCC-CCCCCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS--NMLD-LKQHQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~--~~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
||.++|.+++.++++ ..| ++|+|++++... ..++ +...+.++++.|+||+|| ++| +|+++++
T Consensus 151 tG~~~~~~~l~~l~~-----------~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g-~~G~r~G~~~~~ 217 (335)
T 1uu1_A 151 TGHVFEREEIERILK-----------TGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVAS 217 (335)
T ss_dssp TCCCCCHHHHHHHHH-----------TTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTT-CGGGCCEEEEEC
T ss_pred CCCCCCHHHHHHHHH-----------hCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcC-CcccCeEEEEeC
Confidence 999999999999999 558 899999987321 1122 233456799999999998 557 7999998
Q ss_pred cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 289 QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 289 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
+++++.+.+.. ...+.|..+..++.++++.........++..++++++.+.|++
T Consensus 218 ~~~~~~l~~~~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 271 (335)
T 1uu1_A 218 EKFIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE 271 (335)
T ss_dssp HHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--------------------------CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87765553211 1136677777777777765322222237788889999999987
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ ++++. +. .++++++.++. .+..++.+.|.++||.++++
T Consensus 272 ~-------g~~~~-~~-------~~~~~~~~~~~-----~~~~~~~~~l~~~gi~v~~~--------------------- 310 (335)
T 1uu1_A 272 M-------GYRIT-DS-------RGNFVFVFMEK-----EEKERLLEHLRTKNVAVRSF--------------------- 310 (335)
T ss_dssp H-------TCCBC-CC-------CSSEEEEECCT-----HHHHHHHHHHHHHTEEEEEE---------------------
T ss_pred C-------CcEEc-CC-------CCeEEEEECCC-----CCHHHHHHHHHHCCEEEEEC---------------------
Confidence 6 34433 22 25677777653 12335777788889998751
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|+|++ +.+|+++++++|+++
T Consensus 311 -------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 -------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 268999997 578999999998753
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=226.59 Aligned_cols=340 Identities=12% Similarity=0.094 Sum_probs=225.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhc-cccCCCCh-----hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKEN-IFSHPHGN-----SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~-~~~np~s~-----~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
.+++..+..+.++.+.+++.+.+... ..+++++. ...... .+.+|+++++++|++++. +++++| ++|
T Consensus 25 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~r~~la~~~g~~~~~--i~~~sG-t~a 97 (405)
T 2vi8_A 25 KIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIV----EELARERAKQLFGAEHAN--VQPHSG-AQA 97 (405)
T ss_dssp SEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHH----HHHHHHHHHHHHTCSEEE--CCCSSH-HHH
T ss_pred ceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHH----HHHHHHHHHHHhCCCceE--EEecCc-HHH
Confidence 34555556666888888887765421 22334322 111222 345889999999987542 334555 999
Q ss_pred HHHHHhhhccCCCc-EEEecCCCcchhh-HH--HHhhc--cc-eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 137 IKTVSEYFEFNEGS-FIYLTDNHTSVLG-MR--ELVKT--NQ-IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 137 l~~~~~al~~~~gd-vv~~~~~h~s~~~-~~--~~~~~--~g-~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+.+++.++. ++|| |+++...|+++.. +. ...+. .. .++++ .+...+++.++++++ ..++++|+++
T Consensus 98 ~~~a~~~~~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~ 170 (405)
T 2vi8_A 98 NMAVYFTVL-EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR------LHRPKLIVAA 170 (405)
T ss_dssp HHHHHHHHC-CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEEC
T ss_pred HHHHHHHhc-CCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHH------hcCCeEEEEe
Confidence 999999996 8999 8888888888753 21 12221 11 33333 234567777766443 1157888874
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEccccccccCCcceEE
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISFYKMFGYPTGLGAL 285 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~~K~~g~p~G~G~l 285 (815)
++| .|...++++|.++|+ ++|+++|+|++++.+..+.+.... .+|++++|+||+|++|.| |++
T Consensus 171 -~~~-~~~~~~l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~ 236 (405)
T 2vi8_A 171 -AAA-YPRIIDFAKFREIAD-----------EVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMI 236 (405)
T ss_dssp -CSS-CCSCCCHHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEE
T ss_pred -CCC-CCccCCHHHHHHHHH-----------HcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEE
Confidence 333 367779999999999 899999999998865322222111 589999999999987888 999
Q ss_pred EEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHH
Q psy16512 286 IVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTY 363 (815)
Q Consensus 286 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~ 363 (815)
++++++.+.+.+.. ..+..++++...+.++.++++.+...+ .. .++..++++++.
T Consensus 237 ~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~ 293 (405)
T 2vi8_A 237 LCQEQFAKQIDKAI-----------------------FPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLA 293 (405)
T ss_dssp EECHHHHHHHHHHH-----------------------TTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEcHHHHHHHHhhh-----------------------cccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99977765553221 012345677778888778887765322 22 388899999999
Q ss_pred HHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCH
Q psy16512 364 FYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSD 443 (815)
Q Consensus 364 ~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~ 443 (815)
+.|+++ +++++.+.. .++++.+.++... .+..++.+.|.++||.+++|..+.. . .+
T Consensus 294 ~~L~~~-------g~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~g~~~~~--~---~~--- 349 (405)
T 2vi8_A 294 SALQNE-------GFTLVSGGT------DNHLLLVDLRPQQ---LTGKTAEKVLDEVGITVNKNTIPYD--P---ES--- 349 (405)
T ss_dssp HHHHHT-------TCEEGGGSC------SSSEEEEECGGGT---CCHHHHHHHHHHHTEECEEECCTTC--S---SC---
T ss_pred HHHHhC-------CCeEecCCC------CceEEEEEccCCC---CCHHHHHHHHHHcCceeccCcCccc--c---CC---
Confidence 999887 577775421 2678888876321 2344688888999999998763210 0 00
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhc
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~ 498 (815)
....+++|+|++.+ .+++|+++++++|++++.+-
T Consensus 350 ---------------------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 387 (405)
T 2vi8_A 350 ---------------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV 387 (405)
T ss_dssp ---------------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred ---------------------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhcc
Confidence 00136799999973 57999999999999987543
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=228.23 Aligned_cols=299 Identities=13% Similarity=0.093 Sum_probs=200.1
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc----e
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~ 173 (815)
..++++.++++++ +++++ |++|+|+++++.+++.++. ++|| |++....|+++... .+...| .
T Consensus 85 ~~~lr~~la~~~~~~~g~~~~~~~~~--i~~~~G~~~ai~~~~~~~~-~~gd~Vl~~~p~y~~~~~~--~~~~~g~~~~~ 159 (428)
T 1iay_A 85 LPEFRKAIAKFMEKTRGGRVRFDPER--VVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRD--LRWRTGVQLIP 159 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTS--CEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHH--TTTTTCCEEEE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCChhh--EEEccChHHHHHHHHHHhC-CCCCeEEEccCCCcchHHH--HHHhcCCEEEE
Confidence 5678888888876 66776 9999999999999999997 8998 88988888776432 222334 3
Q ss_pred EEcCch-h-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 174 YSFSVD-D-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 174 v~~~~~-~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
++.+.+ + .++++.++++++... ...+++++|++++++||||.++| +++|.++|+ ++|+++|+|
T Consensus 160 v~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~D 227 (428)
T 1iay_A 160 IHCESSNNFKITSKAVKEAYENAQ-KSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTN-----------QHNIHLVCD 227 (428)
T ss_dssp ECCCTTTTTCCCHHHHHHHHHHHH-HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------TTTCEEEEE
T ss_pred eecCCccCCcCCHHHHHHHHHHHH-hcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHH-----------HCCeEEEEe
Confidence 444432 1 356666666543110 01246899999999999999999 666777777 899999999
Q ss_pred cccccCC----CCCCCCC---------CCCc--EEEEccccccccCCc--ceEEEE-ecccccccCcccccCceEEEEec
Q psy16512 249 AATYCGS----NMLDLKQ---------HQPD--FISISFYKMFGYPTG--LGALIV-KQKSAHVLNKTFYGGGTVKISMA 310 (815)
Q Consensus 249 ~a~~~g~----~~~dl~~---------~~~D--~vv~S~~K~~g~p~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~ 310 (815)
++++... ...++.. +++| +++.|+||+|| ++| +|++++ ++++++.++..
T Consensus 228 ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g-~~Glr~G~~~~~~~~~~~~~~~~------------ 294 (428)
T 1iay_A 228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKM------------ 294 (428)
T ss_dssp CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHH------------
T ss_pred ccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcC-CCCceEEEEEeCCHHHHHHHHHH------------
Confidence 9987532 1112111 1257 88999999998 557 599999 45555544211
Q ss_pred CCcccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 311 NENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
...++.+.++..++..+++... ...... +++.++++++.+.|+++ +++++.+.
T Consensus 295 --------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~-- 351 (428)
T 1iay_A 295 --------------SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-------GIKCLKNN-- 351 (428)
T ss_dssp --------------HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCBCCCS--
T ss_pred --------------HhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCC--
Confidence 0112455666666666665422 111222 77888899999999886 45554332
Q ss_pred CCCCcccceEEEEEecCCC-Cc-cCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 387 GESKYQGNIVNFNLLHKDG-TY-YGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~-~~-~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
.+.++++.++.... .. ....++.+.|.+ +||.+++|..|...
T Consensus 352 -----~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~------------------------------ 396 (428)
T 1iay_A 352 -----AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ------------------------------ 396 (428)
T ss_dssp -----SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS------------------------------
T ss_pred -----eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC------------------------------
Confidence 26778888764210 00 012246666655 59999987543211
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++||+++ ..+++++++++++|++++.+
T Consensus 397 ---~~~~iRis~~-~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 397 ---EPGWFRVCFA-NMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp ---SSSEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred ---CCCEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence 1378999999 57999999999999997643
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-22 Score=216.96 Aligned_cols=317 Identities=15% Similarity=0.144 Sum_probs=210.6
Q ss_pred hhhhhhhhcccc------cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAGV------YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~~------~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|.....+ .++.+.+++.+.+... .++...+. ... ..++++++++++|+ +++ +++|+|++
T Consensus 27 g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~--~~~~~~y~-~~~----~~~l~~~la~~~g~-~~~--v~~~~g~t 96 (375)
T 2eh6_A 27 GKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL--LHVSNLYE-NPW----QEELAHKLVKHFWT-EGK--VFFANSGT 96 (375)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC--SCCCTTBC-CHH----HHHHHHHHHHTSSS-CEE--EEEESSHH
T ss_pred CCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc--cccCcccC-CHH----HHHHHHHHHhhcCC-CCe--EEEeCchH
Confidence 356667654332 5677888887766432 23222221 223 67899999999998 344 99999999
Q ss_pred hhHHHHHhhh--cc---CCC-c-EEEecCCCcchhh-HHHHhhcc----ceEEcCchh----hhcchhhhhhhhhhhhhc
Q psy16512 135 SAIKTVSEYF--EF---NEG-S-FIYLTDNHTSVLG-MRELVKTN----QIYSFSVDD----ARNMLNEFKESQENVENM 198 (815)
Q Consensus 135 ~al~~~~~al--~~---~~g-d-vv~~~~~h~s~~~-~~~~~~~~----g~v~~~~~~----~~~~~~~~~~l~~~~~~~ 198 (815)
+|+.+++.++ .. ++| | |++....|+.... +....... +..+...+. ..+++.+++ .+
T Consensus 97 ~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~l 169 (375)
T 2eh6_A 97 ESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK-------LL 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHH-------Hh
Confidence 9999998753 12 467 7 8888877655433 33322111 111111111 124445544 33
Q ss_pred CCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCCCCC--CcEEE
Q psy16512 199 RHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLKQHQ--PDFIS 269 (815)
Q Consensus 199 ~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~~~~--~D~vv 269 (815)
.+++++|++++++||||.+.| +++|.++|+ ++|+++|+|++++ ++... .++..++ +|++
T Consensus 170 ~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~- 237 (375)
T 2eh6_A 170 DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICK-----------EKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI- 237 (375)
T ss_dssp CTTEEEEEECSEETTTTSEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE-
T ss_pred cCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE-
Confidence 467999999999999999988 888999998 8999999999998 54332 2333444 8877
Q ss_pred EccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh
Q psy16512 270 ISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR 349 (815)
Q Consensus 270 ~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~ 349 (815)
|++|+++++.++|++++++++++.+++...+ ... ..+.....++.++++.+.
T Consensus 238 -s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~l~~~~--- 289 (375)
T 2eh6_A 238 -ALAKGLGGGVPIGAILAREEVAQSFTPGSHG-----------------------STF-GGNPLACRAGTVVVDEVE--- 289 (375)
T ss_dssp -EECGGGGTTSCCEEEEEEHHHHTTCCTTSCC-----------------------CSS-TTCHHHHHHHHHHHHHHH---
T ss_pred -EEcccccCCCCeEEEEEcHHHHhhhcCCCCC-----------------------CCC-CCCHHHHHHHHHHHHHHH---
Confidence 5559998555699999998877666442111 111 234555555556666654
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCcc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCH 429 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~ 429 (815)
...++.+++++++.+.|+++ +. ... ...++++++.++. +. .++.+.|.++||.++++.
T Consensus 290 ~~~~~~~~~~~~l~~~L~~~------~~-~~~--------~~~g~~~~~~~~~-~~-----~~~~~~l~~~gi~~~~~~- 347 (375)
T 2eh6_A 290 KLLPHVREVGNYFKEKLKEL------GK-GKV--------KGRGLMLGLELER-EC-----KDYVLKALEKGLLINCTA- 347 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------TS-SEE--------EEETTEEEEECSS-CC-----HHHHHHHHHTTEECEEET-
T ss_pred HHHHHHHHHHHHHHHHHHHH------hc-CCc--------eEEEEEEEEEEcC-cH-----HHHHHHHHHCCCEEecCC-
Confidence 23388889999999999887 22 111 1236788887753 22 247777878999987531
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|++++..++++|+++++++|+++
T Consensus 348 --------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 348 --------------------------------------GKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp --------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred --------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 268999999889999999999999875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=226.01 Aligned_cols=336 Identities=13% Similarity=0.053 Sum_probs=217.7
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
..|..++++..+.+.... +.....+..... ..++|+.++++++ +++++ |++|+|+++|+.+++.++.
T Consensus 106 ~~p~~~~~~a~~~l~~~~-~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~~~al~~~~~~l~ 178 (500)
T 3tcm_A 106 LFSADSISRAKQILAMIP-GRATGAYSHSQG----IHGLRDAIASGIASRDGFPANADD--IFLTDGASPGVHLMMQLLI 178 (500)
T ss_dssp HSCHHHHHHHHHHHTTST-TSCSSSCCCTTC----CHHHHHHHHHHHHHHHSSCCCGGG--EEEESSSHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHcCC-CCcCCCcCCCcC----hHHHHHHHHHHHHhhcCCCCCccc--EEEcCCHHHHHHHHHHHHc
Confidence 356667777655554311 101111222233 5667777777763 56666 9999999999999999986
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~ 221 (815)
..+|| |+++.+.|+++......++... .++++.+. .++++.++++|+... ....++++|++++++||||.+++.+
T Consensus 179 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~k~ivl~~p~NPtG~~~s~~ 257 (500)
T 3tcm_A 179 RNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDAR-SRGINVRALVVINPGNPTGQVLAEE 257 (500)
T ss_dssp CSTTEEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHH-HTTCEEEEEEEESSCTTTCCCCCHH
T ss_pred CCCCCEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHH-hcCCCceEEEEECCCCCCcccCCHH
Confidence 46898 9999989988766655544333 56666543 567788877664211 1123689999999999999999977
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCC---------CCCC-cEEEEcccccc-ccCCc--ce
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLK---------QHQP-DFISISFYKMF-GYPTG--LG 283 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~---------~~~~-D~vv~S~~K~~-g~p~G--~G 283 (815)
++.++++ +|+++|+++|+|+++..... ..++. .... .+++.|+||.| | ++| +|
T Consensus 258 ~l~~i~~--------la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g-~~G~R~G 328 (500)
T 3tcm_A 258 NQYDIVK--------FCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYG-ECGKRGG 328 (500)
T ss_dssp HHHHHHH--------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTC-CGGGCCE
T ss_pred HHHHHHH--------HHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCC-CCccceE
Confidence 7666644 23389999999999765321 11110 1112 26677999998 6 557 79
Q ss_pred EEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH-----------HHHhhh
Q psy16512 284 ALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----------TMEKKR 349 (815)
Q Consensus 284 ~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-----------~l~~~~ 349 (815)
|+++ ++++++.+.... ....+++..+..++..+++ +.....
T Consensus 329 ~~~~~~~~~~~~~~l~~~~-------------------------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 383 (500)
T 3tcm_A 329 YFEITGFSAPVREQIYKIA-------------------------SVNLCSNITGQILASLVMNPPKASDESYASYKAEKD 383 (500)
T ss_dssp EEEEESCCTTHHHHHHHHH-------------------------HTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHH-------------------------hcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHH
Confidence 9998 677665543211 1123566777777766664 222222
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-------ccCHH--HHHHhhhcC
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-------YYGYS--EVQNLANLK 420 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-------~~~~~--~v~~~l~~~ 420 (815)
...++++++++++.+.|+++ |++.+..+.+ +.+++..+...... ..... .+.++|.++
T Consensus 384 ~~~~~l~~~~~~l~~~L~~~------~g~~~~~~~g-------~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~ 450 (500)
T 3tcm_A 384 GILASLARRAKALEHAFNKL------EGITCNEAEG-------AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLEST 450 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCcEEecCCe-------EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHC
Confidence 22377888899999999988 7888876542 33333333211100 00111 134777889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||.+.+|+.|.... ..+++|++++ .+++++++++++|.+++.
T Consensus 451 gI~v~pg~~f~~~~--------------------------------g~~~iRis~~--~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 451 GIVVVPGSGFGQVP--------------------------------GTWHFRCTIL--PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp CEECEESTTTCCCT--------------------------------TCCBEEEESC--SCTTTHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCCC--------------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence 99999998765311 1368999999 688999999999988764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-22 Score=227.56 Aligned_cols=304 Identities=12% Similarity=0.083 Sum_probs=200.3
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc-eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ-IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g-~v~ 175 (815)
..++++.++++++ +++++ |++|+|+++|+.+++.++. ++|| |++....|+++..... ..+... .++
T Consensus 88 ~~~l~~~la~~~~~~~~~~~~~~~~~--v~~~~gg~~a~~~~~~~l~-~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~ 164 (435)
T 3piu_A 88 LPAFKKAMVDFMAEIRGNKVTFDPNH--LVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 164 (435)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHHhhCCCCCCCHHH--EEEcCChHHHHHHHHHHhc-CCCCeEEECCCccccHHHHHHHhcCCEEEEee
Confidence 5788999999887 66776 9999999999999999997 8999 8888888887754333 221111 556
Q ss_pred cCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.+.++ .++++.++++++... ....++++|++++++||||.++|.+++.++++ .|+++|+++|+|++|+.
T Consensus 165 ~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~--------~~~~~~~~li~Dea~~~ 235 (435)
T 3piu_A 165 CTSSNGFQITETALEEAYQEAE-KRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS--------FVEDKGIHLISDEIYSG 235 (435)
T ss_dssp CCGGGTSCCCHHHHHHHHHHHH-HTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGG
T ss_pred CCCccCCcCCHHHHHHHHHHHH-hcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHH--------HHHHcCCEEEEeccccc
Confidence 65543 256777776554211 11246899999999999999999866555443 23389999999999875
Q ss_pred CC----CCCCCCC-------------CCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCc
Q psy16512 254 GS----NMLDLKQ-------------HQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 254 g~----~~~dl~~-------------~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
+. ...++.. .+..+++.|+||.|| .+| +|+++++++ +.+.++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g-~~G~r~G~~~~~~~~~~~~~~~~--------------- 299 (435)
T 3piu_A 236 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM--------------- 299 (435)
T ss_dssp GCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHH---------------
T ss_pred cccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC-CCceeEEEEEeCCHHHHHHHHHH---------------
Confidence 32 1111111 112388899999998 446 799998543 43333111
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
...++.+.+...++.++++... +..... +++.++++++.+.|+++ +++++.+..
T Consensus 300 -----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~---- 357 (435)
T 3piu_A 300 -----------SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-------GISCLNGNA---- 357 (435)
T ss_dssp -----------GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCEECCCCS----
T ss_pred -----------hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccCCCe----
Confidence 0112344455555555554322 111222 77788888899999876 677765542
Q ss_pred CcccceEEEEEecCCCC-cc-CHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCC
Q psy16512 390 KYQGNIVNFNLLHKDGT-YY-GYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGK 466 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~-~~-~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~ 466 (815)
+.++++.++..... .. ...++.+.| +++||.+++|..|.+.
T Consensus 358 ---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~--------------------------------- 401 (435)
T 3piu_A 358 ---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT--------------------------------- 401 (435)
T ss_dssp ---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS---------------------------------
T ss_pred ---eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC---------------------------------
Confidence 57888887642110 00 122455555 5559999988655421
Q ss_pred CceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 467 PTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 467 ~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
..+++||+++.. +++++++++++|.+++.+
T Consensus 402 ~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 402 EPGWFRVCFANL-PERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp STTEEEEECSSS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHH
Confidence 137899999866 899999999999998754
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=218.18 Aligned_cols=318 Identities=11% Similarity=0.115 Sum_probs=201.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
..++++.++++++.+ + +++++|+|+|+.+++.++..++|| |+++..+|+++.......+... .++++.+..+++
T Consensus 40 ~~~l~~~la~~~~~~--~--~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ 115 (374)
T 3uwc_A 40 LEKFEKRFAALHNAP--H--AIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGYVIDP 115 (374)
T ss_dssp HHHHHHHHHHHTTCS--E--EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCG
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCH
Confidence 789999999999986 3 899999999999999999338998 8899989988765544332222 455554455677
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ 264 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~ 264 (815)
+.+++++ ++++++|+ ++||||.+.|+++|.++|+ ++|+++|+|++++.|.. ++....+
T Consensus 116 ~~l~~~~-------~~~~~~v~---~~n~~G~~~~~~~i~~~~~-----------~~~~~li~D~~~~~g~~-~~~~~~~ 173 (374)
T 3uwc_A 116 EKIEAAI-------TDKTKAIM---PVHYTGNIADMPALAKIAK-----------KHNLHIVEDACQTILGR-INDKFVG 173 (374)
T ss_dssp GGTGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-----------HTTCEEEEECTTCTTCE-ETTEETT
T ss_pred HHHHHhC-------CCCceEEE---EeCCcCCcCCHHHHHHHHH-----------HcCCEEEEeCCCccCce-eCCeecc
Confidence 7776644 35788877 7899999999999999999 89999999999988754 3333333
Q ss_pred --CcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 265 --PDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 265 --~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+|++++|+| |+++++...|+++.+++ +.+.+++....+... .+. ....+.++ .+..+.
T Consensus 174 ~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~~~~~~~~-~~~~~~ 236 (374)
T 3uwc_A 174 SWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDV---------CVEYGINC-RMDTIQ 236 (374)
T ss_dssp SSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEE-------TTE---------ESSCCCBC-BCCHHH
T ss_pred ccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccc-------cCc---------cccccccC-CCCHHH
Confidence 699999988 99983233677776653 444443332222110 000 00011111 111122
Q ss_pred HHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh
Q psy16512 340 YGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL 416 (815)
Q Consensus 340 ~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~ 416 (815)
+++.. +..+....++.+++++++.+.|.++ ++ +++..... .....+..|.+...+ ..++.+.
T Consensus 237 aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~l~~~ 301 (374)
T 3uwc_A 237 AVIANRLMNQLETITEKRRGIAHLYDQSFVDL------SEFIDVPVRRE----GVYHVFHIYVLRVKY-----RDQLFQY 301 (374)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHTGGG------TTTEECCCCCT----TEECCCSSEEEEETT-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCeEEeccCCC----CCceeeEEEEEEcCC-----HHHHHHH
Confidence 22222 2222122377888899999999887 55 77653321 112232333333222 3458888
Q ss_pred hhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 417 ANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 417 l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
|.++||.++++. ++.+.. ..++....... ..+....+.+|++++.++|++||++++++|+
T Consensus 302 L~~~gi~v~~~~~~~~~~~~~~--~~~~~~~~~~~--------------~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~ 365 (374)
T 3uwc_A 302 LKDNGIEVKIHYPIAMHLQPAA--KSLGYQQGDFP--------------MAEKHGEAVITLPAHPYLTEEEINYIIKKVR 365 (374)
T ss_dssp HHHTTBCCBCSCSSCGGGSGGG--GGGCCCTTSCH--------------HHHHHHHHEEEECCCTTSCHHHHHHHHHHHH
T ss_pred HHHCCCccccCCCCccccChhh--hhcCCccCCCc--------------cHHHHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 999999999875 222111 11121100000 0000113789999999999999999999999
Q ss_pred HHHhhc
Q psy16512 493 QYFLQQ 498 (815)
Q Consensus 493 ~~~~~~ 498 (815)
+++.+.
T Consensus 366 ~~l~~~ 371 (374)
T 3uwc_A 366 EFYLEK 371 (374)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 987653
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=215.08 Aligned_cols=301 Identities=11% Similarity=0.042 Sum_probs=200.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
..++++++++++|.+ + .++++|+++|+.+++.++. ++|| |+++...|++... +...+...| ...++. .
T Consensus 61 ~~~l~~~la~~~g~~-~---~i~~~sG~~ai~~~~~~~~-~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~---~ 132 (389)
T 3acz_A 61 VEQFEEMVCSIEGAA-G---SAAFGSGMGAISSSTLAFL-QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT---S 132 (389)
T ss_dssp HHHHHHHHHHHHTCS-E---EEEESSHHHHHHHHHTTTC-CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT---T
T ss_pred HHHHHHHHHHHhCCC-e---EEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC---C
Confidence 789999999999986 2 5666677899999999886 8898 9999999988655 333355556 334433 2
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+++++++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+ .
T Consensus 133 d~~~l~~-------~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~-----------~~~~~livD~~~~~~~~~~~~-~ 193 (389)
T 3acz_A 133 DVEKVKA-------AWKPNTKMVYLESPANPTCKVSDIKGIAVVCH-----------ERGARLVVDATFTSPCFLKPL-E 193 (389)
T ss_dssp CHHHHHH-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------hcCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCccccccCcc-c
Confidence 4444444 33467999999999999999999999999999 899999999999877532222 2
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||++++|.+ .|++++++ ++++.+++... ...++.+....+++.
T Consensus 194 ~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~------------------------~~g~~~~~~~~~~~~ 249 (389)
T 3acz_A 194 LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRK------------------------DAGSLMAPMDAFLCA 249 (389)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH------------------------HHCCCCCHHHHHHHH
T ss_pred cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHH------------------------hcCCCCCHHHHHHHH
Confidence 5799999999999997866 49999998 77665533221 112233444444444
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. ..+++..+.+..+.+.|++. +.++-+ .+.-... ....+++++|.+.+
T Consensus 250 ~~l~~l~---~r~~~~~~~~~~l~~~l~~~------~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------- 313 (389)
T 3acz_A 250 RGMKTLP---IRMQIHMENGLKVAKFLEQH------EKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------- 313 (389)
T ss_dssp HHHTTHH---HHHHHHHHHHHHHHHHHHHC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-------
T ss_pred cCccHHH---HHHHHHHHHHHHHHHHHHcC------CCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-------
Confidence 4444332 22355566677777777765 222211 1110000 02347899999864
Q ss_pred HHHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 410 YSEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
..++.+.+.+.||.++. | ++|..... ..++.+... .+ |...+.||+|++.+++
T Consensus 314 ~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~---~~~~~~~~~-~~--------------g~~~~~iRlsvg~~~~ 375 (389)
T 3acz_A 314 FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTH---AAVPENIMR-KQ--------------GITPELVRISVGIENV 375 (389)
T ss_dssp HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTT---SSSCHHHHH-HH--------------TCCTTEEEEECCSSCH
T ss_pred HHHHHHHHHhCCCcEECcCCCCcccEeeCCccccc---ccCCHHHHH-hc--------------CCCcCeEEEEeccCCH
Confidence 12477888888988776 5 56654322 122332211 11 3335899999999877
Q ss_pred HHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLN 492 (815)
Q Consensus 481 ~edi~~lv~~L~ 492 (815)
++.++.+.++|+
T Consensus 376 ~~li~~l~~al~ 387 (389)
T 3acz_A 376 DDIIADLKQALE 387 (389)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 777777777764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=217.58 Aligned_cols=305 Identities=10% Similarity=0.048 Sum_probs=199.3
Q ss_pred HHHHHHHHhHcCCCCC-------ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 108 DQMRTKILQYFNTDSD-------HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 108 ~~~r~~la~~~g~~~~-------~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
+.+.+.+++.+|.+.+ ..+|++|+|+++|+.+++.++. ++|| |++..+.|+.+....+..+... .++.+.
T Consensus 85 ~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 163 (425)
T 2r2n_A 85 SWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-NPGDNVLLDEPAYSGTLQSLHPLGCNIINVASDE 163 (425)
T ss_dssp HHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHGGGTCEEEEECEET
T ss_pred HHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-CCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCcCC
Confidence 3444444455687641 1259999999999999999997 8999 8888877776654443322211 344433
Q ss_pred hhhhcchhhhhhhhhhhh-----hcCCCccEEEE-ecccCCCccccChH---HHHHHhhccccccccccCCCCeEEEEec
Q psy16512 179 DDARNMLNEFKESQENVE-----NMRHSNSLFVY-PAESNFSGTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~-----~~~~~t~lv~i-~~~~n~tG~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
+ .++++.++++++.... ...+++++|++ ++++||||.++|.+ +|.++|+ ++|+++|+|+
T Consensus 164 ~-~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~-----------~~~~~li~De 231 (425)
T 2r2n_A 164 S-GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR-----------KYDFLIIEDD 231 (425)
T ss_dssp T-EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEEC
T ss_pred C-CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHH-----------HcCCEEEEEC
Confidence 3 3566666654420000 00145788866 79999999999988 5666666 8999999999
Q ss_pred cccc----CCCCCCCCC---CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccC
Q psy16512 250 ATYC----GSNMLDLKQ---HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 250 a~~~----g~~~~dl~~---~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
+++. +..+.++.. .+.++++.|+||+|+ | | +||+++++++++.+....
T Consensus 232 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~-GlRiG~~~~~~~l~~~l~~~~--------------------- 288 (425)
T 2r2n_A 232 PYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S-GLRIGFLTGPKPLIERVILHI--------------------- 288 (425)
T ss_dssp TTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S-TTCCEEEEEEHHHHHHHHHHH---------------------
T ss_pred CcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C-ccceEEEecCHHHHHHHHHHH---------------------
Confidence 9862 322223322 245688999999998 6 6 799999988776553221
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHH-----hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCCCCccc
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDTME-----KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGESKYQG 393 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~l~-----~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~~~~~~ 393 (815)
....++.+.+...++.++++.+. ..-..+ +++++.++++.+.|++.. |++ .+..+. .+
T Consensus 289 ---~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-----~~~~~~~~p~-------~g 353 (425)
T 2r2n_A 289 ---QVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWL-----TGLAEWHVPA-------AG 353 (425)
T ss_dssp ---HTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----SSSEEECCCS-------BS
T ss_pred ---HHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCeEEeCCC-------ce
Confidence 12234667777777777776532 111122 677778888888887631 454 444443 26
Q ss_pred ceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEE
Q psy16512 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRI 473 (815)
Q Consensus 394 ~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRv 473 (815)
.++++.++..... ...+.+.|.++||.+++|..|.... ....+++|+
T Consensus 354 ~~~~~~~~~~~~~---~~~~~~~l~~~gv~v~pg~~f~~~~------------------------------~~~~~~iRi 400 (425)
T 2r2n_A 354 MFLWIKVKGINDV---KELIEEKAVKMGVLMLPGNAFYVDS------------------------------SAPSPYLRA 400 (425)
T ss_dssp SEEEEEETTCSCC---HHHHHTHHHHTTEECEEGGGGSSST------------------------------TSCCCEEEE
T ss_pred EEEEEEeCCCCCH---HHHHHHHHHHCCcEEechhhhcCCC------------------------------CCCCCEEEE
Confidence 7788888642111 1125778889999999887654211 011378999
Q ss_pred eccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 474 SYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 474 s~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|++. .+++++++++++|.+++.+
T Consensus 401 s~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 401 SFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred EeCC-CCHHHHHHHHHHHHHHHHH
Confidence 9984 4899999999999987643
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-21 Score=218.41 Aligned_cols=310 Identities=14% Similarity=0.060 Sum_probs=203.7
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDA 181 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~ 181 (815)
..+++++++++++|.+ + +++++|+++|+.+++.++. ++|| ||++...|+++.... ..+...| .+.++.+
T Consensus 82 ~~~~l~~~la~~~g~~--~--~~~~~sG~~Ai~~al~~l~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAP--A--AFATASGMAAVFTSLGALL-GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-- 154 (414)
T ss_dssp HHHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHTTC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred HHHHHHHHHHHHHCCC--c--EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC--
Confidence 3789999999999973 2 7888999999999999997 8999 888888888765533 3344455 4444433
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.++++ +.++|++|++++++||||.+.|+++|.++|+ ++|+++|+|++++.+.....+
T Consensus 155 -d~~~l~~a-------i~~~t~~v~le~p~NptG~~~~l~~i~~la~-----------~~g~~livDe~~~~~~~~~~~- 214 (414)
T 3ndn_A 155 -DLSQWERA-------LSVPTQAVFFETPSNPMQSLVDIAAVTELAH-----------AAGAKVVLDNVFATPLLQQGF- 214 (414)
T ss_dssp -CHHHHHHH-------TSSCCSEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHCCCG-
T ss_pred -CHHHHHHh-------cCCCCeEEEEECCCCCCCccccHHHHHHHHH-----------HcCCEEEEECCCcccccCCch-
Confidence 44555543 3468999999999999999999999999999 899999999999876533333
Q ss_pred CCCCcEEEEccccccccCCc---ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG---LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|++|+|+ +.| .|+++.+++.+. .++... +...++.+....+.
T Consensus 215 ~~g~div~~S~sK~l~-~~G~~~~G~vv~~~~~~~~~l~~~~------------------------~~~g~~~~~~~a~~ 269 (414)
T 3ndn_A 215 PLGVDVVVYSGTKHID-GQGRVLGGAILGDREYIDGPVQKLM------------------------RHTGPAMSAFNAWV 269 (414)
T ss_dssp GGTCSEEEEETTTTTT-CSSCCCCEEEEECHHHHTTHHHHHH------------------------HHHCCCCCHHHHHH
T ss_pred hcCCCeEeccCCcccc-CCCCceEEEEEECHHHHHHHHHHHH------------------------HHcCCCCCHHHHHH
Confidence 4578999999999999 556 699988877653 232111 11122333333333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCC-C
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDG-T 406 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~-~ 406 (815)
+..+++. +...+++..+.++++.+.|++. |.+. +..|.-.+. ....+++++|.+++... .
T Consensus 270 ~~~~l~~---l~~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~ 340 (414)
T 3ndn_A 270 LLKGLET---LAIRVQHSNASAQRIAEFLNGH------PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVA 340 (414)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhcC------CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcccc
Confidence 3333333 2223467778888888888877 5554 333321000 02257899999975200 0
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
......+.+.|...++.++.|..++- +....+..++++...+. |..++.||+|+|..+.++.
T Consensus 341 ~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------g~~~~~iRlsvG~e~~~dl 405 (414)
T 3ndn_A 341 KQRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAI---------------GLGDGVVRISVGLEDTDDL 405 (414)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHT---------------TCCTTEEEEECCSSCHHHH
T ss_pred HHHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhc---------------CCCCCeEEEEeCcCCHHHH
Confidence 00123467778888888888876543 33333444444332221 4556899999997655444
Q ss_pred HHHHHHHH
Q psy16512 484 VKYFLSFL 491 (815)
Q Consensus 484 i~~lv~~L 491 (815)
++.|.++|
T Consensus 406 i~dl~~al 413 (414)
T 3ndn_A 406 IADIDRAL 413 (414)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 44444443
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=209.55 Aligned_cols=305 Identities=13% Similarity=0.094 Sum_probs=198.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++.++. ++|| |+++...|+++.. +...+...| .+.++.+
T Consensus 64 ~~~l~~~ia~~~g~~--~--~i~~~~g~~ai~~~~~~l~-~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~--- 135 (404)
T 1e5e_A 64 VSNLEGKIAFLEKTE--A--CVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA--- 135 (404)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCChHHHHHHHHHHHh-CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC---
Confidence 778999999999985 2 6667777899999999987 8999 9999999988765 222345555 4444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCC-CCeEEEEecccccCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR-SNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~-~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.++++ +.++|++|++++++||||.++|+++|.++|+ + +|+++++|++++.+.....+
T Consensus 136 d~~~l~~~-------i~~~t~~v~l~~p~NptG~v~~l~~i~~la~-----------~~~~~~li~De~~~~~~~~~~~- 196 (404)
T 1e5e_A 136 IPGEVKKH-------MKPNTKIVYFETPANPTLKIIDMERVCKDAH-----------SQEGVLVIADNTFCSPMITNPV- 196 (404)
T ss_dssp STTHHHHH-------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------TSTTCEEEEECTTTCTTTCCGG-
T ss_pred CHHHHHHh-------cCCCCcEEEEECCCCCCCcccCHHHHHHHHH-----------hhcCCEEEEECCCchhhhCCcc-
Confidence 44555543 3467999999999999999999999999999 9 99999999999877632222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.++.|+++.|+||+|++|.+ .|+++++++.++ .+.+...+ +..++.+....+++
T Consensus 197 ~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~-----------------------~~g~~~~~~~~~~~ 253 (404)
T 1e5e_A 197 DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKD-----------------------ITGSVISPHDAWLI 253 (404)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCC-----------------------CCCCCCCHHHHHHH
T ss_pred ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHh-----------------------CCCCCCCHHHHHHH
Confidence 35789999999999997765 499999988765 55332211 10234555555555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------cc--CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------YS--NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~~--~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
..+++.+. ..+++..+.++.+.+.|++.. ++ ...|+++++.+.. ...++++.|.+.+. .
T Consensus 254 ~~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~~~g~~~~~~~~~~------~ 320 (404)
T 1e5e_A 254 TRGLSTLN---IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQM----RMYGSMITFILKSG------F 320 (404)
T ss_dssp HHHHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHC----SSCCSEEEEEETTH------H
T ss_pred HHhHhHHH---HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhC----CCCceEEEEEeCCC------H
Confidence 55655432 123555666667777776651 00 0012222221110 12488999987531 1
Q ss_pred HHHHHhhhcCCcEecc---C------ccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCH
Q psy16512 411 SEVQNLANLKKIQLRT---G------CHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNW 481 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~---g------~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ 481 (815)
.++.+.+.+.||.+.. | ++|.... +..++.+.... .|.+.++||+|++.
T Consensus 321 ~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~---~~~~~~~~~~~---------------~g~~~~~iRis~g~---- 378 (404)
T 1e5e_A 321 EGAKKLLDNLKLITLAVSLGGCESLIQHPASMT---HAVVPKEEREA---------------AGITDGMIRLSVGI---- 378 (404)
T ss_dssp HHHHHHHHTCSSSEESSCCCSSSCEEECGGGTT---TTTSCHHHHHH---------------TTCCTTEEEEECCS----
T ss_pred HHHHHHHHhCCCceeccCCCCcceeeecccccc---cccCCHHHHHh---------------cCCCCCeEEEEeCC----
Confidence 2467788888985443 2 2333221 11222222111 13335899999996
Q ss_pred HHHHHHHHHHHHHHh
Q psy16512 482 DDVKYFLSFLNQYFL 496 (815)
Q Consensus 482 edi~~lv~~L~~~~~ 496 (815)
|+++++++.|++++.
T Consensus 379 e~~~~li~~l~~al~ 393 (404)
T 1e5e_A 379 EDADELIADFKQGLD 393 (404)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777777654
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=225.01 Aligned_cols=316 Identities=11% Similarity=-0.002 Sum_probs=210.4
Q ss_pred HHHHHHHHHhHcCCCCCc--------eeEEecCCchhhHHHHHhhhcc------------------CCCc-EEEecCCCc
Q psy16512 107 IDQMRTKILQYFNTDSDH--------YSVIFTSGATSAIKTVSEYFEF------------------NEGS-FIYLTDNHT 159 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~--------~~iv~t~g~t~al~~~~~al~~------------------~~gd-vv~~~~~h~ 159 (815)
.+++.+++++++|.+... -..+||+|+|+|+..++.+... .+++ ++++..+|+
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~ 199 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHS 199 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCH
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchH
Confidence 567888889999987531 1479999999999888877642 1455 778889999
Q ss_pred chhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcccccccccc
Q psy16512 160 SVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC 238 (815)
Q Consensus 160 s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~ 238 (815)
|+.....+.+... .++++.++.+++++++++|+.... ....+.+|++++++|++|.+.|+++|+++|+
T Consensus 200 s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~-~g~~~~~vv~~~~~t~~G~id~l~~I~~la~---------- 268 (481)
T 4e1o_A 200 SVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQ-RGLVPVFVCATLGTTGVCAFDCLSELGPICA---------- 268 (481)
T ss_dssp HHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHH-TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH----------
T ss_pred HHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCCCcCcCCHHHHHHHHH----------
Confidence 9877666543322 667776778899999887752111 1123788999999999999999999999999
Q ss_pred CCCCeEEEEecccccCCCCCC-CC--CC---CCcEEEEccccccccCCcceEEEEecccc-c-cc--CcccccCceEEEE
Q psy16512 239 SRSNCFVLLDAATYCGSNMLD-LK--QH---QPDFISISFYKMFGYPTGLGALIVKQKSA-H-VL--NKTFYGGGTVKIS 308 (815)
Q Consensus 239 ~~~gi~vivD~a~~~g~~~~d-l~--~~---~~D~vv~S~~K~~g~p~G~G~l~~~~~~~-~-~l--~~~~~g~~~~~~~ 308 (815)
++|+++|||++++.+....+ .. .. .+|++++++|||++.|.|+|+++++++.. . .+ .+.+......
T Consensus 269 -~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~--- 344 (481)
T 4e1o_A 269 -REGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS--- 344 (481)
T ss_dssp -HHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT---
T ss_pred -HcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc---
Confidence 89999999999987643211 11 11 35999999999999999999999987542 1 11 1222111000
Q ss_pred ecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 309 MANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
... ..........+. . ...+++.+++..+...+. ..++..++++++.+.|+++ |+++++.+..
T Consensus 345 ---~~~---~~~~~~~~~~~r-~-~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~------~g~~~~~~~~- 409 (481)
T 4e1o_A 345 ---GVA---TDFMHWQIPLSR-R-FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND------PSFEIPAKRH- 409 (481)
T ss_dssp ---TTS---CCGGGGSSSSCC-C-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------TTEECCSCCC-
T ss_pred ---CCC---CCcccccccCCC-C-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC------CCeEEecCCc-
Confidence 000 000001111222 2 233455556665543332 2288899999999999998 7999986543
Q ss_pred CCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCC
Q psy16512 387 GESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGK 466 (815)
Q Consensus 387 ~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~ 466 (815)
.++++|.+.+.+. ...++.+.|.++|+.+.++ .... |
T Consensus 410 ------~~~v~f~~~~~~~---~~~~l~~~L~~~g~~~~~~-----~~~~----------------------------g- 446 (481)
T 4e1o_A 410 ------LGLVVFRLKGPNS---LTENVLKEIAKAGRLFLIP-----ATIQ----------------------------D- 446 (481)
T ss_dssp ------SSEEEEEESSCHH---HHHHHHHHHHHHCSSBCEE-----EEET----------------------------T-
T ss_pred ------eeEEEEEeCCchH---HHHHHHHHHHhCCeEEEEe-----eEEC----------------------------C-
Confidence 6899999864221 1234667777777443221 1000 1
Q ss_pred CceEEEEeccCC-CCHHHHHHHHHHHHHHHh
Q psy16512 467 PTGSIRISYGHA-SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 467 ~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~ 496 (815)
..++|+++..+ +|++||++++++|+++..
T Consensus 447 -~~~lR~~~~~~~tt~~di~~~~~~i~~~~~ 476 (481)
T 4e1o_A 447 -KLIIRFTVTSQFTTRDDILRDWNLIRDAAT 476 (481)
T ss_dssp -EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -EEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 36899997754 589999999999998764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-21 Score=215.72 Aligned_cols=301 Identities=11% Similarity=0.064 Sum_probs=202.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhH--HHHHhhhccCC------------Cc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAI--KTVSEYFEFNE------------GS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al--~~~~~al~~~~------------gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.+++++++++++ |++|+|+++++ .+++.++. .+ ++ |++..+.|+.+....+..+..
T Consensus 78 ~~~lr~~ia~~~~~~~~~--i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~ 154 (422)
T 3d6k_A 78 IADIRELWAEALGLPADL--VVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFE 154 (422)
T ss_dssp CHHHHHHHHHHHTCCGGG--EEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CHHHHHHHHHHhCCChhH--EEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCE
Confidence 678999999999999887 99999999997 67777776 44 33 888888887776555544333
Q ss_pred c-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEE-EecccCCCccccChHHHHHHhhccccccccccC-CCCeEEEEe
Q psy16512 172 Q-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFV-YPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-RSNCFVLLD 248 (815)
Q Consensus 172 g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~-i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-~~gi~vivD 248 (815)
. .++++.++ ++++.++++++ ..++++|+ +++++||||.++|.+++.++++ .|+ ++|+++|+|
T Consensus 155 ~~~v~~~~~g-~d~~~l~~~l~------~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~--------~~~~~~~~~li~D 219 (422)
T 3d6k_A 155 MINVPMTDEG-PDMGVVRELVK------DPQVKGMWTVPVFGNPTGVTFSEQTCRELAE--------MSTAAPDFRIVWD 219 (422)
T ss_dssp EEEEEEETTE-ECHHHHHHHHT------STTEEEEEECCSSCTTTCCCCCHHHHHHHHH--------CCCSSTTCEEEEE
T ss_pred EEecCCCCCC-CCHHHHHHHHh------cCCCeEEEEcCCCCCCCCCCCCHHHHHHHHH--------HHhhccCCEEEEE
Confidence 2 55665543 66666665442 13688888 7999999999999998888887 666 899999999
Q ss_pred ccccc---CCC---CCCC-------CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCc
Q psy16512 249 AATYC---GSN---MLDL-------KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANEN 313 (815)
Q Consensus 249 ~a~~~---g~~---~~dl-------~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~ 313 (815)
++++. ... ..++ ...+.++++.|+||+ ++| | +||+++++++++.+....
T Consensus 220 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~-GlriG~~~~~~~l~~~l~~~~-------------- 283 (422)
T 3d6k_A 220 NAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THA-GSGVSFFASSKENIEWYASHA-------------- 283 (422)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCT-TSSCEEEECCHHHHHHHHHHH--------------
T ss_pred CCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCc-ccceEEEEeCHHHHHHHHHHH--------------
Confidence 99863 111 1122 233567899999998 435 6 899999987766553221
Q ss_pred ccccccCccccccCCCCChhHHHHHHHHHHHH---Hhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 314 FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
....++.+.++..++.++++.. ...-.. .+++++.++++.+.|.+.. ...+++++..+..
T Consensus 284 ----------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l--~~~~~~~~~~p~~---- 347 (422)
T 3d6k_A 284 ----------NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRL--SEYGVAKWTSPTG---- 347 (422)
T ss_dssp ----------HHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--GGGTCEEECCCSB----
T ss_pred ----------HhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcCCceEEeCCCc----
Confidence 1112345666666666666431 111111 1445555556666664310 0003466665542
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
+.++++.++.. +...+.+.|.++||.+++ |.+|..+.. ...
T Consensus 348 ---g~~~~~~~~~~-----~~~~~~~~l~~~gV~v~~~g~~f~~~~~------------------------------~~~ 389 (422)
T 3d6k_A 348 ---GYFISVDVVPG-----TASRVVELAKEAGIALTGAGSSFPLHND------------------------------PNN 389 (422)
T ss_dssp ---SSCEEEEESTT-----CHHHHHHHHHHTTEECCCTTTTSGGGCC------------------------------TTS
T ss_pred ---ceEEEEECCCC-----CHHHHHHHHHHCCeEEEcCccccCCCCC------------------------------CCC
Confidence 67788888643 234577888999999998 444431100 013
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++|||++. .+++++++++++|++++.
T Consensus 390 ~~iRis~~~-~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 390 ENIRLAPSL-PPVAELEVAMDGFATCVL 416 (422)
T ss_dssp CEEEECCSS-SCHHHHHHHHHHHHHHHH
T ss_pred CeEEEecCC-CCHHHHHHHHHHHHHHHH
Confidence 789999997 899999999999998764
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=229.06 Aligned_cols=317 Identities=12% Similarity=0.042 Sum_probs=215.2
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc-eEEcCch---
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ-IYSFSVD--- 179 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g-~v~~~~~--- 179 (815)
.+.++++.+|+++|++. .+++++|+|+|+.+++.++. ++|| ||++..+|+|++.. ....+... +++...+
T Consensus 174 ~i~e~e~~lA~~~gae~---~i~v~nGtt~an~~ai~al~-~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~~~~ 249 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYG 249 (730)
T ss_dssp HHHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTC
T ss_pred HHHHHHHHHHHHHCCCc---EEEECCHHHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCccccC
Confidence 37899999999999864 37888999999999999998 9999 99999999998754 33222111 2322221
Q ss_pred --hhhcchhh-----hhhhhhhhhh--cCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 180 --DARNMLNE-----FKESQENVEN--MRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 180 --~~~~~~~~-----~~~l~~~~~~--~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
+.++.+.+ +++|+..... ..+++ ++++++++ |++|.+.|+++|+++|+ ++|+++++|+
T Consensus 250 i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~-----------~~g~~livDe 317 (730)
T 1c4k_A 250 FIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIG-----------HLCDYIEFDS 317 (730)
T ss_dssp CEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHG-----------GGBSEEEEEC
T ss_pred ccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHH-----------HcCCeEEEEc
Confidence 22466666 4433200000 01112 89999988 68999999999999999 8999999999
Q ss_pred ccccCC---------CCCCCCCCCCc----EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccc
Q psy16512 250 ATYCGS---------NMLDLKQHQPD----FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 250 a~~~g~---------~~~dl~~~~~D----~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+|+.+. .+++...+++| +++.|+||++++|.+.|+++++++.+..- +.+.. ...+
T Consensus 318 Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~-~~~i~---------~~~~-- 385 (730)
T 1c4k_A 318 AWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQ-LRYCD---------HKHF-- 385 (730)
T ss_dssp TTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTS-TTCCC---------HHHH--
T ss_pred ccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCc-ccccC---------HHHH--
Confidence 986421 22344345777 99999999999887788998988754110 00000 0000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCC------
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYG------ 387 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~------ 387 (815)
......+..+++++..++++.++++++.. .+... ++..++++++++.|++ + ++++++.+....
T Consensus 386 --~~~~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i------~g~~v~~p~~~~~~~~~~ 457 (730)
T 1c4k_A 386 --NNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAG------SMFRPFVPPVVNGKKWED 457 (730)
T ss_dssp --HHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------CSSEESSCSEETTEEGGG
T ss_pred --HHHHHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhC------CCeEEccccccccccccc
Confidence 00112356788999999999999988766 34444 8888999999999988 6 578877653100
Q ss_pred --------------------C---C---Cc----ccceEEEEEecC-------CCCccCHHHHHHhhhcCCcEeccCccC
Q psy16512 388 --------------------E---S---KY----QGNIVNFNLLHK-------DGTYYGYSEVQNLANLKKIQLRTGCHC 430 (815)
Q Consensus 388 --------------------~---~---~~----~~~i~~f~~~~~-------~~~~~~~~~v~~~l~~~gI~v~~g~~~ 430 (815)
+ . .. .+..+.+..++. ....++..++.+.|.++||.+...
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~--- 534 (730)
T 1c4k_A 458 GDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS--- 534 (730)
T ss_dssp SCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE---
T ss_pred cccccccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC---
Confidence 0 0 00 011156665421 111244567888998889987531
Q ss_pred CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 431 NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 431 ~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+ .+.+|++++..+|++++++|+++|.++..+
T Consensus 535 ---------~---------------------------~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~ 565 (730)
T 1c4k_A 535 ---------D---------------------------LNSILFLMTPAETPAKMNNLITQLLQLQRL 565 (730)
T ss_dssp ---------C---------------------------SSEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------C---------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 0 267999999999999999999999987654
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=222.26 Aligned_cols=304 Identities=10% Similarity=0.023 Sum_probs=196.9
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc---------------EEEe-cCCCcchhhH
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS---------------FIYL-TDNHTSVLGM 164 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd---------------vv~~-~~~h~s~~~~ 164 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| +|++ ..+|+.+...
T Consensus 85 ~~~lr~~ia~~l~~~~g~~~~~~~--i~~t~G~t~al~~~~~~l~-~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~ 161 (444)
T 3if2_A 85 DSAFIDALVGFFNRHYDWNLTSEN--IALTNGSQNAFFYLFNLFG-GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDV 161 (444)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHHHSS-EEEECC-------CEEEEEEEESSSSCCGGGTTC
T ss_pred CHHHHHHHHHHHHhhcCCCCCHHH--EEEecCcHHHHHHHHHHHh-CCCccccccccccccccceEEEeCCCCccchhhc
Confidence 678999999987 667777 9999999999999999997 7775 5554 6677665442
Q ss_pred HH---Hhhccc--e--EEcCc-h----hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhc
Q psy16512 165 RE---LVKTNQ--I--YSFSV-D----DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRN 229 (815)
Q Consensus 165 ~~---~~~~~g--~--v~~~~-~----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~ 229 (815)
.. .....+ . ++++. + ..++++.+++++. .+.+++++|++++++||||.++| +++|.++|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~- 236 (444)
T 3if2_A 162 HVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPA----LKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAK- 236 (444)
T ss_dssp CSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHH----HHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-
T ss_pred ccccchhhccCceEEecccccccCccccCCCHHHHHHHHH----hcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHH-
Confidence 21 122233 3 34443 1 1467777766432 13567999999999999999999 555666677
Q ss_pred cccccccccCCCCeEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~ 302 (815)
++|+++|+|++++.+... ......+.++++.|+||+ + ++| +||++.++++++.+.....
T Consensus 237 ----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~-~~G~r~G~~~~~~~l~~~~~~~~~-- 302 (444)
T 3if2_A 237 ----------RYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-G-LPGMRTGIIVADAKVIEAVSAMNA-- 302 (444)
T ss_dssp ----------HTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-T-CGGGCCEEEECCHHHHHHHHHHHH--
T ss_pred ----------HCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-c-CCCCceEEEEECHHHHHHHHHHHH--
Confidence 899999999998743221 111224578999999997 4 335 7999888877665532210
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH---hhhhhH-HHHHHHHHHHHHHHHhccccCCCC--
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME---KKRKSF-TNAFELSQYTYFYFKQLSYSNGQP-- 376 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~---~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p-- 376 (815)
....+.+.....++...++... .....+ +++.++++.+.+.|.+.. +
T Consensus 303 ----------------------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~ 355 (444)
T 3if2_A 303 ----------------------VVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQAL-----GDY 355 (444)
T ss_dssp ----------------------HHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHS-----SSS
T ss_pred ----------------------hccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccC
Confidence 0111233344444444443211 111112 455666667777775521 2
Q ss_pred cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 377 LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
++.+..+.. +.++++.++... ++..++.+.|.++||.+++|..|..+.....
T Consensus 356 ~~~~~~~~~-------g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~------------------ 407 (444)
T 3if2_A 356 PLMIHKPEG-------AIFLWLWFKDLP---ISTLDLYERLKAKGTLIVPSEYFFPGVDVSD------------------ 407 (444)
T ss_dssp SEEEECCCB-------SSEEEEEETTCS---SCHHHHHHHHHHTTEECEEGGGSCTTCCCTT------------------
T ss_pred CceEecCCc-------cEEEEEEcCCCC---CCHHHHHHHHHHCCeEEecchhhcCCCCCcc------------------
Confidence 466665442 677777776411 2344688888999999999988754311000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.....+++|||++. ++++|++++++|.+++.
T Consensus 408 -------~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 408 -------YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp -------CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH
T ss_pred -------cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH
Confidence 00113789999996 89999999999998764
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=210.60 Aligned_cols=322 Identities=14% Similarity=0.115 Sum_probs=216.3
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+.. . ...... .+++++++++++| .++ ++|++|++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~-~~~~~~----~~~l~~~la~~~g--~~~--v~~~~~gt 103 (392)
T 3ruy_A 35 GNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTS--R-AFHSDQ----LGPWYEKVAKLTN--KEM--VLPMNTGA 103 (392)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--T-TSEETT----HHHHHHHHHHHHT--CSE--EEEESSHH
T ss_pred CCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccc--c-ccCCHH----HHHHHHHHHHhcC--CCE--EEEeCcHH
Confidence 34566665432 136788888877765422211 1 112333 7899999999998 444 99999999
Q ss_pred hhHHHHHhhhccC--------C-Cc-EEEecCCCcchhhHH-HHhhccc----eEEcCch----hhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN--------E-GS-FIYLTDNHTSVLGMR-ELVKTNQ----IYSFSVD----DARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~~--------~-gd-vv~~~~~h~s~~~~~-~~~~~~g----~v~~~~~----~~~~~~~~~~~l~~~~ 195 (815)
+|+.+++.++... + ++ ||+....|++..... ....... ..+...+ ...+++.+++
T Consensus 104 ~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~------ 177 (392)
T 3ruy_A 104 EAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKA------ 177 (392)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHH------
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHH------
Confidence 9999999876521 2 45 788788876544322 2211111 1110000 0114444444
Q ss_pred hhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCc
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPD 266 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D 266 (815)
.+.+++++|++++++||||.++| +++|.++|+ ++|+++|+|++++ ++.. ..+.....+|
T Consensus 178 -~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d 245 (392)
T 3ruy_A 178 -AITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCK-----------KENVLFVADEIQTGLGRTGKVFACDWDNVTPD 245 (392)
T ss_dssp -HCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------TTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred -HhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeechhCCCccccchhhhccCCCCC
Confidence 33478999999999999999999 999999999 8999999999985 3221 1122233578
Q ss_pred EEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 267 FISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
+++ ++|.+++. ..+|++++++++++.+.+... ....+.+.+++.++.++++.+
T Consensus 246 ~~~--~SK~l~gG~~~~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~ 299 (392)
T 3ruy_A 246 MYI--LGKALGGGVFPISCAAANRDILGVFEPGSH------------------------GSTFGGNPLACAVSIAALEVL 299 (392)
T ss_dssp EEE--ECGGGGTTTSCCEEEEECHHHHTTCCTTSS------------------------CCSSTTCHHHHHHHHHHHHHH
T ss_pred EEE--EchhhhCChhhhEEEEECHHHHhhhccCCc------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 775 46988731 238999999887766543221 112366778888888888876
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.+ +.+....+ .++++.+.++. +. .++.+.|.++||.++
T Consensus 300 ~~-~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~--------~g~~~~~~~~~-~~-----~~l~~~l~~~gi~v~ 360 (392)
T 3ruy_A 300 EE-EKLTERSLQLGEKLVGQLKEIDN----PMITEVRG--------KGLFIGIELNE-PA-----RPYCEQLKAAGLLCK 360 (392)
T ss_dssp HH-TTHHHHHHHHHHHHHHHHTTCCC----TTEEEEEE--------ETTEEEEEESS-CS-----HHHHHHHHTTTEECC
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHhcC----CCceEEEe--------eeeEEEEEEcc-hH-----HHHHHHHHHCCcEEe
Confidence 55 22338899999999999987621 33444322 36788888765 22 357888889999998
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+|. .+++|+++++..+++|+++++++|++++
T Consensus 361 ~~~---------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 361 ETH---------------------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp CBT---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 652 2789999999999999999999999875
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=225.24 Aligned_cols=308 Identities=15% Similarity=0.120 Sum_probs=194.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHH-HHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMR-ELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~-~~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+ + +++++|+++|+.+++. +. ++|| ||++...|+++.... ..+...| .+.++.+
T Consensus 135 ~~~l~~~la~~~g~~--~--~i~~~sGt~al~~~l~-~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 205 (464)
T 1ibj_A 135 RDALESLLAKLDKAD--R--AFCFTSGMAALSAVTH-LI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 205 (464)
T ss_dssp HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHT-TS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC--e--EEEECCHHHHHHHHHH-Hh-CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 788999999999975 3 6777777889998886 54 8898 888998888876532 3344455 3444332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .+.+++++|++++++||||.++|+++|.++|+ ++|+++|+|++++.|.....+ .
T Consensus 206 d~~~l~~-------~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~-----------~~gi~livDea~~~g~~~~~~-~ 266 (464)
T 1ibj_A 206 KLDEVAA-------AIGPQTKLVWLESPTNPRQQISDIRKISEMAH-----------AQGALVLVDNSIMSPVLSRPL-E 266 (464)
T ss_dssp SHHHHHH-------HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-----------TTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------HhccCceEEEEeCCCCCCCEeecHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-h
Confidence 4445544 33478999999999999999999999999999 899999999999887542222 2
Q ss_pred CCCcEEEEccccccccCCcc--eEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGL--GALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~--G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|+||+|++|.|+ |++++++ ++.+.+.... ....++.+....+++.
T Consensus 267 ~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~------------------------~~~g~~~~~~~~~a~~ 322 (464)
T 1ibj_A 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQ------------------------NSEGSGLAPFDCWLCL 322 (464)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHH------------------------HHTTCBCCHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHH------------------------HhcCCCCCHHHHHHHH
Confidence 57999999999999878785 9999986 5555443221 0112234444444544
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------c--cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLS------Y--SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYS 411 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~--~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~ 411 (815)
.+++.+.. .+++.......+.+.|++.. + ....|+++++.+.. ...+++++|.+.+.. ...
T Consensus 323 ~al~~~~~---r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~----~g~g~~~~~~l~~~~----~~~ 391 (464)
T 1ibj_A 323 RGIKTMAL---RIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQA----KGAGSVFSFITGSVA----LSK 391 (464)
T ss_dssp HHHTTHHH---HHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTC----SCCCSEEEEECSCHH----HHH
T ss_pred hchhhHHH---HHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccC----CCCceEEEEEECCHH----HHH
Confidence 55543221 11222222233334443320 0 11224555554432 235789999874210 112
Q ss_pred HHHHhhhcCCcEeccCc----cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 412 EVQNLANLKKIQLRTGC----HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 412 ~v~~~l~~~gI~v~~g~----~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
.+.+.|...||.++.|. .|.+... .+.+.+.+ .-..-|..+++||+|++. ||++++
T Consensus 392 ~~~~~L~~~gi~v~~G~~~sl~~~p~~~-~~~~~~~~---------------~~~~~g~~~~~iRlsvg~----edi~~l 451 (464)
T 1ibj_A 392 HLVETTKYFSIAVSFGSVKSLISMPCFM-SHASIPAE---------------VREARGLTEDLVRISAGI----EDVDDL 451 (464)
T ss_dssp HHHHHCSSSEECSCCCSSSCEEECTTTT-TTCSCCSS---------------SSSSSSCCTTCEEEECCS----SCHHHH
T ss_pred HHHHhcCcceEeecCCCCceeeeccccc-ccccCCHH---------------HHHhcCCCcCeEEEEeCC----CCHHHH
Confidence 36667777899999886 3433211 11111000 000112335789999996 789999
Q ss_pred HHHHHHHHhh
Q psy16512 488 LSFLNQYFLQ 497 (815)
Q Consensus 488 v~~L~~~~~~ 497 (815)
++.|++++..
T Consensus 452 i~~L~~al~~ 461 (464)
T 1ibj_A 452 ISDLDIAFKT 461 (464)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhh
Confidence 9999987753
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=219.59 Aligned_cols=349 Identities=10% Similarity=0.015 Sum_probs=221.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCC----hhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHG----NSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAI 137 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s----~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al 137 (815)
.++|+ .......+.+.+++.+.+.. .+|.. .....+. .+++++++++++|++. .+++++|+++|+
T Consensus 68 ~~~lg-~~~~~~~p~v~~~~~~~~~~---~~~~~~~~~~~g~~~l----~~~l~~~la~~~g~~~---~~~~~~ggt~a~ 136 (474)
T 1wyu_B 68 FYPLG-SCTMKYNPKLHEEAARLFAD---LHPYQDPRTAQGALRL----MWELGEYLKALTGMDA---ITLEPAAGAHGE 136 (474)
T ss_dssp CCCBT-TTCCCCCCHHHHHHHHTTSS---CCTTSCGGGCHHHHHH----HHHHHHHHHHHHTCSE---EECCCSSHHHHH
T ss_pred ccccc-cccccCCHHHHHHHHHHHHh---cCCCCchhhChHHHHH----HHHHHHHHHHHHCCCc---eeecChHHHHHH
Confidence 45666 33344446677776654221 23322 1223344 8899999999999865 277889999999
Q ss_pred HHHHhhhc---cCCC------cEEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 138 KTVSEYFE---FNEG------SFIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 138 ~~~~~al~---~~~g------dvv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
.+++.++. .++| .||++...|+++.......+... .++++.++.++++.+++++ +++|++|++
T Consensus 137 ~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i-------~~~t~~v~~ 209 (474)
T 1wyu_B 137 LTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKREL-------GPHVAALML 209 (474)
T ss_dssp HHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHC-------STTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhh-------CCCceEEEE
Confidence 87555542 1355 38888889988876654433222 5556555666777776644 467999999
Q ss_pred ecccCCCccc-cChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CCCCCCCCCcEEEEccccccccCC-----
Q psy16512 208 PAESNFSGTK-YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDLKQHQPDFISISFYKMFGYPT----- 280 (815)
Q Consensus 208 ~~~~n~tG~~-~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~dl~~~~~D~vv~S~~K~~g~p~----- 280 (815)
+++ |++|.+ .|+++|+++|+ ++|+++|+|++++.+.. ..+...+++|++++|+||+|+.|.
T Consensus 210 ~~p-n~~G~~~~~l~~i~~l~~-----------~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~ 277 (474)
T 1wyu_B 210 TNP-NTLGLFERRILEISRLCK-----------EAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGP 277 (474)
T ss_dssp CSS-CTTSCCCTTHHHHHHHHH-----------HHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCC
T ss_pred ECC-CCCcccCCCHHHHHHHHH-----------HcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCC
Confidence 997 689998 69999999999 89999999999976653 233334578999999999998774
Q ss_pred cceEEEEecccccccCccccc-CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHH
Q psy16512 281 GLGALIVKQKSAHVLNKTFYG-GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFE 357 (815)
Q Consensus 281 G~G~l~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~ 357 (815)
|+|++++++++++.+...+.+ ++. .+.... . +.....++..++.+..++.++...+..+...+ .. .++..+
T Consensus 278 ~~G~~~~~~~l~~~l~~~~~~~~g~-~~~~~~-~----~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~ 351 (474)
T 1wyu_B 278 GSGPVGVKAHLAPYLPVPLVERGEE-GFYLDF-D----RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVL 351 (474)
T ss_dssp CCCCEEECGGGGGGCCSCEEEECSS-CEEEEC-C----CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcHHHHHhCCCCeeeccCC-eeEecc-c----CcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999887766522221 110 011110 0 01111234445556554444444444322211 11 277888
Q ss_pred HHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhh
Q psy16512 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQR 437 (815)
Q Consensus 358 l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~ 437 (815)
+++++.+.|+++ ++++..+.. ....+.+.+. . ..+..++.+.|.++||.+. +..+.
T Consensus 352 ~~~~l~~~L~~~-------g~~~~~~~~------~~~~~~~~~~--~--~~~~~~l~~~L~~~Gi~~~-~~~~~------ 407 (474)
T 1wyu_B 352 NARYLKELLKEK-------GYRVPYDGP------SMHEFVAQPP--E--GFRALDLAKGLLELGFHPP-TVYFP------ 407 (474)
T ss_dssp HHHHHHHHHHHT-------TCBCSSCSS------CCSCEEEBCS--T--TCCHHHHHHHHHHTTCCCC-EESCS------
T ss_pred HHHHHHHHHhhc-------CcEecCCCC------cceEEEEEcC--C--CCCHHHHHHHHHHCCcccc-ccccc------
Confidence 999999999876 445422211 1111223331 1 1334568888888899753 21110
Q ss_pred hcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 438 FLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 438 ~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
....+++||+++.+++++++++++++|++++.+
T Consensus 408 ---------------------------~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 408 ---------------------------LIVKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp ---------------------------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred ---------------------------cccCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 001378999999999999999999999998766
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-21 Score=214.18 Aligned_cols=326 Identities=11% Similarity=0.057 Sum_probs=201.3
Q ss_pred hHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEc-Cchh
Q psy16512 106 EIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSF-SVDD 180 (815)
Q Consensus 106 ~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~-~~~~ 180 (815)
..+++++++++++|.+. .+++++ +++|+.+++.++. ++|| ||++..+|++... +...+...| ...+ +.+
T Consensus 59 ~~~~l~~~la~~~g~~~---~v~~~s-Gt~A~~~~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 132 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA---ALATAS-GHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE- 132 (421)
T ss_dssp HHHHHHHHHHHHHTCSE---EEEESS-HHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC-
T ss_pred HHHHHHHHHHHHhCCCc---eEEecC-HHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC-
Confidence 37899999999999862 255555 5999999999886 8898 8899999988765 333344556 4445 432
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc-ccCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT-YCGSNMLD 259 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~-~~g~~~~d 259 (815)
+++.+++ .+.++|++|++++++||+|.+.|+++|.++|+ ++|+++|+|+++ +.|... +
T Consensus 133 --d~~~l~~-------~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~-----------~~g~~livD~~~~~~g~~~-~ 191 (421)
T 2ctz_A 133 --RPEEFLA-------LTDEKTRAWWVESIGNPALNIPDLEALAQAAR-----------EKGVALIVDNTFGMGGYLL-R 191 (421)
T ss_dssp --CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECGGGGGGTSC-C
T ss_pred --CHHHHHH-------hhccCCeEEEEECCCCCCCcccCHHHHHHHHH-----------HcCCEEEEECCcccccccC-C
Confidence 4445544 33468999999999999999999999999999 899999999999 877532 2
Q ss_pred CCCCCCcEEEEccccccccCCc-ceEEEEec---cc----ccccCcccccCceEEEEecCC--cccccccCccccc----
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG-LGALIVKQ---KS----AHVLNKTFYGGGTVKISMANE--NFHIKKDGLFEKF---- 325 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G-~G~l~~~~---~~----~~~l~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~---- 325 (815)
....++|++++|+||++++|.+ +|++++.+ ++ .+.+.+...++........+. .+.. ..++
T Consensus 192 ~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~-----~~r~~~~~ 266 (421)
T 2ctz_A 192 PLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIV-----KARVDGLR 266 (421)
T ss_dssp GGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHH-----HHHHTHHH
T ss_pred ccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHH-----HHHHHHHH
Confidence 2245799999999999996653 78888852 22 223434333332211000000 0000 0111
Q ss_pred -cCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC-CCCCCCC----------Cccc
Q psy16512 326 -EDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH-DTDYGES----------KYQG 393 (815)
Q Consensus 326 -~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~-~~~~~~~----------~~~~ 393 (815)
.....+....+++..+++.+. ..+++..++++++.+.|+++ |+++.+. |.....+ ...+
T Consensus 267 ~~g~~~~~~~a~~~~~~l~~l~---~r~~~~~~~a~~l~~~L~~~------p~v~~v~~p~~~~~~~~~~~~~~~~~~~g 337 (421)
T 2ctz_A 267 DQGQALGPFEAWVVLLGMETLS---LRAERHVENTLHLAHWLLEQ------PQVAWVNYPGLPHHPHHDRAQKYFKGKPG 337 (421)
T ss_dssp HHCCCCCHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTCTTHHHHHHHHTTCCC
T ss_pred hcCCCCCHHHHHHHHcCcchHH---HHHHHHHHhHHHHHHHHHhC------CCeeEEECCCCCCCCCHHHHHHhccCCCc
Confidence 122444444444444444432 23456668999999999988 7888763 3210000 2468
Q ss_pred ceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCc---hhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceE
Q psy16512 394 NIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNP---GSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGS 470 (815)
Q Consensus 394 ~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~---~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~ 470 (815)
++++|.+.+. .. ....+...+...++.++.|..|+- +....+..++.+..... |..++.
T Consensus 338 ~ivsf~l~~~-~~--~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~---------------g~~~~~ 399 (421)
T 2ctz_A 338 AVLTFGLKGG-YE--AAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQA---------------GVSPEM 399 (421)
T ss_dssp SEEEEEETTH-HH--HHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHH---------------TCCTTE
T ss_pred eEEEEEeCCC-HH--HHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhc---------------CCCCCe
Confidence 9999998642 11 112355555666777777744432 11112223333322221 344589
Q ss_pred EEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 471 IRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 471 iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
||+|+|.++ ++.+++.|++.
T Consensus 400 vRlS~g~e~----~~~li~~l~~a 419 (421)
T 2ctz_A 400 VRLSVGLEH----VEDLKAELKEA 419 (421)
T ss_dssp EEEECCSSC----HHHHHHHHHHH
T ss_pred EEEEeCCCC----HHHHHHHHHHH
Confidence 999999764 55555555543
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=215.85 Aligned_cols=352 Identities=10% Similarity=0.060 Sum_probs=214.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+.+.+.+++.+.+....+. +..... +.++++.+++++|.+ + .|++++| |+|+.+++.++..++|| |
T Consensus 15 ~~~~~~~a~~~~l~~~~~~-----~~~~~~----~~~l~~~la~~~~~~-~--~i~~~sG-t~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 15 YDDAERNGLVRALEQGQWW-----RMGGDE----VNSFEREFAAHHGAA-H--ALAVTNG-THALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCHHHHHHHHHHHHTSCCB-----TTTCSH----HHHHHHHHHHHTTCS-E--EEEESCH-HHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcCCee-----ecCCHH----HHHHHHHHHHHhCCC-e--EEEeCCH-HHHHHHHHHHcCCCCcCEE
Confidence 3467777777766542111 112233 889999999999986 2 3777766 89999999998338898 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+ ++|+||.+.|+++|.++|+
T Consensus 82 i~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~n~tG~~~~l~~i~~la~- 150 (388)
T 1b9h_A 82 IVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAV-------TPRTKVIM---PVHMAGLMADMDALAKISA- 150 (388)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-
T ss_pred EECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhc-------CcCceEEE---EeCCccCcCCHHHHHHHHH-
Confidence 999999998866544332222 4555543 356777766543 45788877 8899999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCC--CCCCCCCCcEEEEccc--cccccCCcceEEEEecc-c--ccccCcccccC
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNM--LDLKQHQPDFISISFY--KMFGYPTGLGALIVKQK-S--AHVLNKTFYGG 302 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~--~dl~~~~~D~vv~S~~--K~~g~p~G~G~l~~~~~-~--~~~l~~~~~g~ 302 (815)
++|+++|+|++++.|... .++..++ |++++||+ |+++++ ..|+++.+++ + ++.+.... +.
T Consensus 151 ----------~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~S~s~~K~l~g~-~~G~~~~~~~~~~~~~~~~~~~-~~ 217 (388)
T 1b9h_A 151 ----------DTGVPLLQDAAHAHGARWQGKRVGELD-SIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRH-SC 217 (388)
T ss_dssp ----------HHTCCBCEECTTCTTCEETTEEGGGSS-SCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHT-BT
T ss_pred ----------HcCCEEEEecchhcCCccCCeeccccc-ceEEEEccCCCcccCC-CeEEEEECCHHHHHHHHHHHHH-hC
Confidence 899999999999887543 2333333 56666655 777644 3688888876 3 33332111 11
Q ss_pred ceEEEEecCCcccccccCccccccCCC---CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGT---VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt---~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
+.. ...+. ......|+ ++....+++..+++.+.. ..++.+++++++.+.|+++ |+++
T Consensus 218 ~~~-----~~~~~------~~~~~~g~~~~~~~~~~a~~~~~~~~l~~---~~~~~~~~~~~l~~~L~~~------~~~~ 277 (388)
T 1b9h_A 218 GRP-----RDDRR------YFHKIAGSNMRLNEFSASVLRAQLARLDE---QIAVRDERWTLLSRLLGAI------DGVV 277 (388)
T ss_dssp TCC-----TTCSS------CCCCSCCCBCBCBHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHTS------TTCE
T ss_pred CCC-----ccCcc------ceeecccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCcc
Confidence 110 00000 00112233 344444443333333322 3367778899999999887 6788
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhh---hcCCCH---HHHHHHhhcC
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQR---FLGLSD---ITIKFHFQQG 453 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~---~~g~~~---~~~~~~~~~~ 453 (815)
++.+... .....++++++.+++... .+..++.+.|.++||.++.+... .+... .+|... +.+...
T Consensus 278 ~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~~~L~~~gI~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 348 (388)
T 1b9h_A 278 PQGGDVR-ADRNSHYMAMFRIPGLTE--ERRNALVDRLVEAGLPAFAAFRA--IYRTDAFWELGAPDESVDAIARR---- 348 (388)
T ss_dssp ECCCCTT-CCBCCCSEEEEECTTCCH--HHHHHHHHHHHHTTCCEEECCCC--GGGSHHHHHSSCCSSCHHHHHHT----
T ss_pred ccCCCcC-CCccceEEEEEEeCCcCc--ccHHHHHHHHHHCCCCcccccCc--cccChHhHhcCCCcccccccccC----
Confidence 7753210 001235788888764210 12335788888899999886432 11111 011110 000000
Q ss_pred CccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHHHHHHh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L~~~~~ 496 (815)
|+. .+....+.||++++..+ |++||++++++|++++.
T Consensus 349 --~~~----~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~ 386 (388)
T 1b9h_A 349 --CPN----TDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA 386 (388)
T ss_dssp --CHH----HHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred --CHH----HHHHHhCeEEecCCCCCCCHHHHHHHHHHHHHHHh
Confidence 000 00011368999999999 99999999999998764
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=215.18 Aligned_cols=299 Identities=9% Similarity=0.054 Sum_probs=191.4
Q ss_pred HHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhccCCCc------EEEe-cCCCcchhhHHHHhh---c
Q psy16512 107 IDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS------FIYL-TDNHTSVLGMRELVK---T 170 (815)
Q Consensus 107 ~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd------vv~~-~~~h~s~~~~~~~~~---~ 170 (815)
..++|+.+++++ ++++++ |++|+|+|+|+.+++.++. ++|| ++++ .++|+.+........ .
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~~--i~~t~G~t~al~~~~~~l~-~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~ 153 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQN--IALTNGSQSAFFYLFNLFA-GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVS 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGGG--EEEESCHHHHHHHHHHHHS-BC----CCBEEEESSCCCHHHHHC-----CCEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCccc--EEEeCCcHHHHHHHHHHHc-CCCccCCcceEEEeCCCccccchhhccchhhhcc
Confidence 678899999887 577776 9999999999999999997 7753 6665 666666544322111 1
Q ss_pred cc--eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCCCC
Q psy16512 171 NQ--IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSRSN 242 (815)
Q Consensus 171 ~g--~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~g 242 (815)
.+ +.+++.+ ..++++.++ +.+++++|++++++||||.++| +++|.++|+ ++|
T Consensus 154 ~~~~~~~~~~~~~~~~~d~~~l~---------~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~-----------~~~ 213 (417)
T 3g7q_A 154 ARPNIELLPEGQFKYHVDFEHLH---------IGEETGMICVSRPTNPTGNVITDEELMKLDRLAN-----------QHN 213 (417)
T ss_dssp CCCEEEEEGGGEEEEECCGGGCC---------CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHH-----------HTT
T ss_pred ccCcccccCCcccccccCHHHhc---------cccCceEEEECCCCCCCCCccCHHHHHHHHHHHH-----------HcC
Confidence 12 3333332 124444443 2467999999999999999999 555666666 899
Q ss_pred eEEEEecccccCCCC-----CCCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccc
Q psy16512 243 CFVLLDAATYCGSNM-----LDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 243 i~vivD~a~~~g~~~-----~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
+++|+|++++.+... ......+.++++.|+|| ++ ++| +|+++.++++++.+....
T Consensus 214 ~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~-~~G~r~G~~~~~~~~~~~~~~~~---------------- 275 (417)
T 3g7q_A 214 IPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LG-LPGSRCGIIIANDKTITAIANMN---------------- 275 (417)
T ss_dssp CCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GT-CTTSCCEEEECCHHHHHHHHHHH----------------
T ss_pred CEEEEeCCCccccccccccccccCCCCCEEEEEechh-cc-CCCcceEEEEeCHHHHHHHHHhh----------------
Confidence 999999998743211 11122356789999999 45 446 899998887776553221
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHHHH---HhhhhhH-HHHHHHHHHHHHHHHhccccCCCC--cEEEcCCCCCCCC
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKSF-TNAFELSQYTYFYFKQLSYSNGQP--LVELYHDTDYGES 389 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p--~~~l~~~~~~~~~ 389 (815)
.....+.+..+..++...++.. ......+ ++.+++++.+.+.|.+.. + ++++..+..
T Consensus 276 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~~~~~~~~---- 338 (417)
T 3g7q_A 276 --------GIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYL-----SEERCLIHKPEG---- 338 (417)
T ss_dssp --------HHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHC-----CTTTCEEECCCB----
T ss_pred --------cceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCceeeCCCc----
Confidence 1111233445555554444321 1111112 556677777777776521 2 356665543
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.++... ++..++.+.|.++||.+++|..|.++.... . +...+
T Consensus 339 ---g~~~~~~~~~~~---~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~---~-----------------------~~~~~ 386 (417)
T 3g7q_A 339 ---AIFLWLWFKDLP---ITTELLYQRLKARGVLMVPGHYFFPGLDKP---W-----------------------PHTHQ 386 (417)
T ss_dssp ---SSEEEEECTTCS---SCHHHHHHHHHHTTEECEEGGGGCTTBSSC---C-----------------------GGGGG
T ss_pred ---ceEEEEEcCCCC---CCHHHHHHHHHHCCEEEECchhhCCCCccc---c-----------------------ccCCC
Confidence 667777776411 234468888899999999998775432100 0 00137
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++. +++++++++++|.+++.+
T Consensus 387 ~iRis~~~--~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 387 CMRMNYVP--EPDKIEAGVKILAEEIER 412 (417)
T ss_dssp EEEEESCS--CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 99999985 899999999999987753
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-21 Score=212.53 Aligned_cols=323 Identities=12% Similarity=0.131 Sum_probs=216.9
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|.... +..++.+.+++.+.+.... +..+.+ .... .+++++++++++++++++ +++|+|+++
T Consensus 45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~~ 115 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM--AMPQTL-PTPM----RGEFYRTLTAILPPELNR--VFPVNSGTE 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC--CCCTTS-CCHH----HHHHHHHHHHTSCTTEEE--EEEESSHHH
T ss_pred CEEEEccCccccccCCCCCHHHHHHHHHHHHhCC--CCcccc-CCHH----HHHHHHHHHHhcCCCcCE--EEEcCcHHH
Confidence 456665432 3467888888877765422 211111 2233 789999999999886665 999999999
Q ss_pred hHHHHHhhhc-cCCCc-EEEecCCCcc-hhhHHHHhhccc----eEEcCchh----hhcchhhhhhhhhhhhhcCCCccE
Q psy16512 136 AIKTVSEYFE-FNEGS-FIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDD----ARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 136 al~~~~~al~-~~~gd-vv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
|+.+++.++. +.+|+ +|+....|++ +..+....+... +.++..+. ..+++.+++ .+++++++
T Consensus 116 a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~-------~i~~~~~~ 188 (395)
T 1vef_A 116 ANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR-------AVDEETAA 188 (395)
T ss_dssp HHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH-------HCCTTEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHH-------HhccCEEE
Confidence 9999998762 13455 8877776654 444444332221 11221110 124445544 33467899
Q ss_pred EEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC----CCCCCCCCCcEEEEccccc
Q psy16512 205 FVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN----MLDLKQHQPDFISISFYKM 275 (815)
Q Consensus 205 v~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~----~~dl~~~~~D~vv~S~~K~ 275 (815)
|++++++|+||.+.| +++|.++|+ ++|+++|+|++++ ++.. +++.....+|++ |+||+
T Consensus 189 v~~~~~~~~tG~~~~~~~~l~~i~~l~~-----------~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~ 255 (395)
T 1vef_A 189 VILEPVQGEGGVRPATPEFLRAAREITQ-----------EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKA 255 (395)
T ss_dssp EEECSEETTTTSEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred EEEeCccCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEccc
Confidence 999988999999988 899999999 8999999999988 3211 111223357866 78999
Q ss_pred cccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 276 FGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 276 ~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
++++.++|++++++++++.+.+.. .....+.+..++.++.++++.+.. ....++.
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~ 310 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPKGG------------------------HGTTFGGNPLAMAAGVAAIRYLER-TRLWERA 310 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCTTS------------------------SCCSSTTCHHHHHHHHHHHHHHHH-HTTHHHH
T ss_pred ccCCCceEEEEehHHHHhhhccCC------------------------cCCCcCCCHHHHHHHHHHHHHHHh-CCHHHHH
Confidence 995456899999988766554310 011225677777778788887765 2233889
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh-cCCcEeccCccCCchh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN-LKKIQLRTGCHCNPGS 434 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~-~~gI~v~~g~~~~~~~ 434 (815)
+++++++.+.|+++.. +.+... ...++++++.++.. . .++.+.|. ++||.++++.
T Consensus 311 ~~~~~~l~~~l~~~~~----~~~~~~--------~~~g~~~~~~~~~~-~-----~~l~~~l~~~~gi~v~~~~------ 366 (395)
T 1vef_A 311 AELGPWFMEKLRAIPS----PKIREV--------RGMGLMVGLELKEK-A-----APYIARLEKEHRVLALQAG------ 366 (395)
T ss_dssp HHHHHHHHHHHHTSCC----TTEEEE--------EEETTEEEEEESSC-S-----HHHHHHHHHHHCEECEESS------
T ss_pred HHHHHHHHHHHHHhhc----CceEEE--------EEEEEEEEEEEcCh-H-----HHHHHHHHHHCCeEEecCC------
Confidence 9999999999988621 212211 12367888887642 2 24777777 8999987631
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+++|++++++++++++++++++|++++
T Consensus 367 ---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 367 ---------------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp ---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2789999999999999999999999875
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-22 Score=221.57 Aligned_cols=295 Identities=14% Similarity=0.106 Sum_probs=204.0
Q ss_pred HHHHHHHHHhHc-----CCCCCce-eEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhc-cc----eE
Q psy16512 107 IDQMRTKILQYF-----NTDSDHY-SVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKT-NQ----IY 174 (815)
Q Consensus 107 ~~~~r~~la~~~-----g~~~~~~-~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~-~g----~v 174 (815)
..++|+.+++++ +++++++ .|++|+|+++|+.+++.++. ++|| |++..+.|+++... +.. .| .+
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~y~~~~~~---~~~~~g~~~~~~ 165 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV-NQDDTILLPEHNWGNYKLV---FNTRNGANLQTY 165 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC-CTTCEEEEESSCCTHHHHH---HTTTTCCEEEEE
T ss_pred CHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh-CCCCEEEEcCCcCccHHHH---HHHhcCCeEEEE
Confidence 678899999998 7766421 28999999999999999997 8999 88888777766443 333 44 44
Q ss_pred EcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC---hHHHHHHhhccccccccccCC-----CCeEE
Q psy16512 175 SFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP---LSWCNTVHRNHVFKKHFKCSR-----SNCFV 245 (815)
Q Consensus 175 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~---l~~I~~l~~~~~~~~~~~~~~-----~gi~v 245 (815)
+.+.+ ..++++.++++++ ...++++++++++++||||.++| +++|.++|+ + +|+++
T Consensus 166 ~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~-----------~~~~~~~~~~l 230 (430)
T 2x5f_A 166 PIFDKDGHYTTDSLVEALQ----SYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIK-----------ALANKGTKVIA 230 (430)
T ss_dssp CCBCTTSCBCSHHHHHHHH----HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHH-----------HHHHTTCEEEE
T ss_pred eccCccCCcCHHHHHHHHH----hcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHH-----------hhhhccCCEEE
Confidence 44432 3567777766553 11236899999999999999999 566677777 8 99999
Q ss_pred EEecccccCCC----CC----CCCC-CCC---cEEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEE
Q psy16512 246 LLDAATYCGSN----ML----DLKQ-HQP---DFISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKIS 308 (815)
Q Consensus 246 ivD~a~~~g~~----~~----dl~~-~~~---D~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~ 308 (815)
|+|++++.... .. ++.. .+. ++++.|+||+|| ++| +|++++ ++++++.+......
T Consensus 231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~~~~~~~~~~~~~l~~~~~~------- 302 (430)
T 2x5f_A 231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFF-AWGFRVGFMTFGTSDQTTKEVLEAKVKG------- 302 (430)
T ss_dssp EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTT-CGGGCCEEEEEBCCCHHHHHHHHHHHHH-------
T ss_pred EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCC-CCCCCeEEEEEecCCHHHHHHHHHHHhh-------
Confidence 99999874321 11 2222 344 678899999998 557 799999 87776655322100
Q ss_pred ecCCcccccccCccccccCCCCChhHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCC
Q psy16512 309 MANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD----TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDT 384 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~----~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~ 384 (815)
..+...++.+.+...++.++++ +...+....++++++++++.+.|++... ..++++..+.
T Consensus 303 -------------~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~g~~~~~~~ 366 (430)
T 2x5f_A 303 -------------LIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQY---HSHWQAYDFN 366 (430)
T ss_dssp -------------HHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG---TTTEEECCCC
T ss_pred -------------hhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCceeeCCC
Confidence 0011234677788888878877 3333222237778888888888873200 0157776543
Q ss_pred CCCCCCcccceEEEEEecCCCCccCHHHHHHhhhc-CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 385 DYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANL-KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 385 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~-~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
. +.++++.+++ .+..++.+.|.+ +||.+++|.
T Consensus 367 ~-------g~~~~~~~~~-----~~~~~~~~~l~~~~gi~v~~g~----------------------------------- 399 (430)
T 2x5f_A 367 S-------GYFMAIKVHD-----VDPEALRKHLIDKYSIGVIALN----------------------------------- 399 (430)
T ss_dssp B-------SSEEEEEESS-----SCHHHHHHHHHHHHCEECEECS-----------------------------------
T ss_pred c-------eEEEEeCCCC-----CCHHHHHHHHHHhCCEEEecCC-----------------------------------
Confidence 2 4567777762 233457777776 999998750
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+|++. .+++++++++++|++++.
T Consensus 400 ----~~~iRis~~~-~~~e~i~~~~~~l~~~l~ 427 (430)
T 2x5f_A 400 ----ATDIRIAFSC-VEKDDIPHVFDSIAKAID 427 (430)
T ss_dssp ----SSEEEEEGGG-SCGGGHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 2789999995 589999999999998764
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=208.42 Aligned_cols=349 Identities=11% Similarity=0.137 Sum_probs=216.4
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhh-----
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYF----- 144 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al----- 144 (815)
...+++++.+++.+.+....+. + ... ..++++.+++++|++ + +++++|+|+|+.+++.++
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~i~~~sGt~a~~~al~~~~~~~~ 74 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDSKMFT-M------GEY----VKQYETQFAKTFGSK--Y--AVMVSSGSTANLLMIAALFFTKK 74 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCS-S------CHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHHcCCCC-C------ChH----HHHHHHHHHHHHCCC--c--EEEECCHHHHHHHHHHHHHhhhh
Confidence 3456778888877766542211 1 233 889999999999986 2 788888889999999998
Q ss_pred -ccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 145 -EFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 145 -~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
..++|| |+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+++ |++|...|+
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~~g~~~~~ 144 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAV-------TDSTKAILTV---NLLGNPNNF 144 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHC-------CTTEEEEEEE---CGGGCCCCH
T ss_pred cCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHh-------CcCCeEEEEE---CCccChhhH
Confidence 237888 9999999998876554432222 5555544 456777766544 4678999987 467889999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCC--cEEEEcc--ccccccCCcceEEEEec-cccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP--DFISISF--YKMFGYPTGLGALIVKQ-KSAHVL 295 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~--D~vv~S~--~K~~g~p~G~G~l~~~~-~~~~~l 295 (815)
++|.++|+ ++|+++|+|++|+.|... +...++. |+.++|+ +|.++++.| |+++.++ ++.+.+
T Consensus 145 ~~i~~l~~-----------~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~ 211 (390)
T 3b8x_A 145 DEINKIIG-----------GRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHIL 211 (390)
T ss_dssp HHHHHHHT-----------TSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHH
Confidence 99999999 899999999999988654 4444443 6666553 344443445 8888886 454444
Q ss_pred CcccccC--ce---EE---EEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy16512 296 NKTFYGG--GT---VK---ISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFK 367 (815)
Q Consensus 296 ~~~~~g~--~~---~~---~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~ 367 (815)
++...++ .. .. .......+...+......+..++.+..+.+++.. ++.+. ...++.+++++++.+.|+
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l~~l~---~~~~~~~~~~~~l~~~L~ 287 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-LKKLP---RFISVRRKNAEYFLDKFK 287 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhc
Confidence 4332222 00 00 0000000000000000112233555555555533 44433 234788899999999998
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc---CccCCc-hhhhh--h---
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT---GCHCNP-GSCQR--F--- 438 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~---g~~~~~-~~~~~--~--- 438 (815)
++ |++++..+.. ......+.+.+.... ..+..++.+.|.++||.++. |+.|.. +.... +
T Consensus 288 ~~------~~~~~~~~~~----~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~ 355 (390)
T 3b8x_A 288 DH------PYLDVQQETG----ESSWFGFSFIIKKDS--GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVH 355 (390)
T ss_dssp TC------SSEEECCCCS----BCCCCEEEEEECTTS--CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEES
T ss_pred CC------CCcccCCCCC----CcccEEEEEEecCcC--cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCc
Confidence 87 7888875421 111123444554211 12345688899999999997 555655 43221 0
Q ss_pred cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 439 LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 439 ~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
..+...+. ...+.||++++.++|++||++++++|
T Consensus 356 ~~~~~~~~-------------------~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 356 NNVDNAEY-------------------LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp SCCHHHHH-------------------HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCChHHHH-------------------HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 01111110 11368999999999999999999986
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=214.19 Aligned_cols=354 Identities=13% Similarity=0.041 Sum_probs=216.5
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+. + ... ..++++.+++++|.+ + +++++|+++|+.+++.++..++|| |
T Consensus 18 ~~~~~~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~~~~~~gt~al~~~~~~~~~~~gd~V 82 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGWIT-T------GPK----NQELEAAFCRLTGNQ--Y--AVAVSSATAGMHIALMALGIGEGDEV 82 (393)
T ss_dssp CCHHHHHHHHHHHHHTCCS-S------SHH----HHHHHHHHHHHHCCS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHhcCCcC-C------ChH----HHHHHHHHHHHhCCC--c--EEEecChHHHHHHHHHHcCCCCCCEE
Confidence 4566777776666442221 1 133 789999999999975 3 899999999999999999338898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .++++++ ..++++.+++++ .+++++|+++ |+||...|+++|.++|+
T Consensus 83 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l-------~~~~~~v~~~---~~~G~~~~~~~i~~l~~- 151 (393)
T 1mdo_A 83 ITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAI-------TPQTKAIIPV---HYAGAPADLDAIYALGE- 151 (393)
T ss_dssp EEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHC-------CTTEEEECCB---CGGGCCCCHHHHHHHHH-
T ss_pred EeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhc-------CCCceEEEEe---CCCCCcCCHHHHHHHHH-
Confidence 999989988765444332222 4555543 246666666543 3578888875 58999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC-CcEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceE
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ-PDFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTV 305 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~-~D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~ 305 (815)
++|+++|+|++++.|... +...++ .|++++|+| |+++ +...|+++.+ +++++.+.+....+...
T Consensus 152 ----------~~~~~li~D~a~~~g~~~-~~~~~~~~d~~~~S~~k~K~l~-~~~~g~~~~~~~~~~~~l~~~~~~~~~~ 219 (393)
T 1mdo_A 152 ----------RYGIPVIEDAAHATGTSY-KGRHIGARGTAIFSFHAIKNIT-CAEGGIVVTDNPQFADKLRSLKFHGLGV 219 (393)
T ss_dssp ----------HHTCCBCEECTTCTTCEE-TTEETTSSSEEEEECCTTSSSC-SSSCEEEEESCHHHHHHHHHHTBTTEEC
T ss_pred ----------HcCCeEEEECccccCCeE-CCeecCCCCeEEEeCCCCCccc-cccceEEEeCCHHHHHHHHHHHhcCCcc
Confidence 899999999999876532 222234 899999999 8887 3336888886 56666554432222211
Q ss_pred EEEecCCcccccccCccccc---cCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc
Q psy16512 306 KISMANENFHIKKDGLFEKF---EDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY 381 (815)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~ 381 (815)
.....+. ...+..+ +.|+ .....+ ++..++..+..+....++.+++++++.+.|.++ + ++++
T Consensus 220 ---~~~~~~~---~~~~~~~~~~~~g~~~~~~~~-~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~------~-~~~~ 285 (393)
T 1mdo_A 220 ---DAWDRQS---GGRAPQAEVLAPGYKYNLPDL-NAAIALAQLQKLDALNARRAAIAAQYHQAMADL------P-FQPL 285 (393)
T ss_dssp ---C--------------CCEESSCCCBCCCCHH-HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTS------S-CEEC
T ss_pred ---cchhhhc---ccccccccccccCccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C-cccc
Confidence 0011100 0001111 2333 111222 122222333333223377778899999999887 4 6765
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC-----CCHHHHHHHhhcCCcc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG-----LSDITIKFHFQQGHIC 456 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~c 456 (815)
..... .....+.++++.++... ...+..++.+.|.++||.++.|..|.+.......+ +...+
T Consensus 286 ~~~~~-~~~~~~~~~~v~~~~~~-~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 352 (393)
T 1mdo_A 286 SLPSW-EHIHAWHLFIIRVDEAR-CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTE----------- 352 (393)
T ss_dssp CCCSS-CEECCCSCEEEECCHHH-HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHH-----------
T ss_pred cCCCC-CCCceeEEEEEEecccc-cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHH-----------
Confidence 32100 00122457777775200 00233468888989999999987663221000000 00000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
....+.+|++++.++|++|+++++++|++++...+
T Consensus 353 --------~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 353 --------WNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp --------HHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred --------HHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 00125899999999999999999999999876554
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=219.32 Aligned_cols=336 Identities=11% Similarity=0.060 Sum_probs=221.2
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
..+.++.+.+++.+.+.. ....+|++............+ .+|+++++++|++++. +++++ +++|+.+++.++. +
T Consensus 32 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~--i~~~s-Gt~a~~~~~~~~~-~ 107 (407)
T 2dkj_A 32 ENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWAN--VQPHS-GSQANMAVYMALM-E 107 (407)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSS-HHHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcce--EEecc-hHHHHHHHHHHhc-C
Confidence 344478888888776643 222334322100000000133 4678999999997643 44555 4669999999996 8
Q ss_pred CCc-EEEecCCCcchh---hHHHHhhccc-eEEc--Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL---GMRELVKTNQ-IYSF--SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~---~~~~~~~~~g-~v~~--~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |+++..+|+++. ......+... .+++ ++ +..++++.++++++ .+++++|++++++|+ ...|
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~------~~~~~~v~~~~p~~~--~~~~ 179 (407)
T 2dkj_A 108 PGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLAL------EHRPKVIVAGASAYP--RFWD 179 (407)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHH------HHCCSEEEECCSSCC--SCCC
T ss_pred CCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHh------hcCCeEEEEeccccC--CCCC
Confidence 998 888888888874 2222222211 3343 32 34567777766443 126899999888886 7889
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC---CCCCcEEEEccccccccCCcceEEEEe-ccccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK---QHQPDFISISFYKMFGYPTGLGALIVK-QKSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~---~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++++.|....+.. ...+|+++.|+||+++++.| |+++++ +++++.+
T Consensus 180 l~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l 247 (407)
T 2dkj_A 180 FKAFREIAD-----------EVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRI 247 (407)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHH
Confidence 999999999 8999999999987643211111 01379999999998877776 999998 5776555
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KS-FTNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~-~~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+... .+..++++...+.++.++++.+...+ .. .++..++++++.+.|+++
T Consensus 248 ~~~~~-----------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 300 (407)
T 2dkj_A 248 DKLIF-----------------------PGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR---- 300 (407)
T ss_dssp HHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred Hhhhc-----------------------ccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----
Confidence 33211 12235667766767777887754222 22 388899999999999887
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+. ..++++++.++... .+..++.+.|.++||.+++|..+... . +
T Consensus 301 ---g~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~--~---~------------- 350 (407)
T 2dkj_A 301 ---GYRIVTGG------TDNHLFLVDLRPKG---LTGKEAEERLDAVGITVNKNAIPFDP--K---P------------- 350 (407)
T ss_dssp ---TCEEGGGS------CSSSEEEEECGGGT---CCHHHHHHHHHHTTEECEECCCTTCS--S---C-------------
T ss_pred ---CceeecCC------CCceEEEEECcccC---CCHHHHHHHHHHcCceecCCcCcccc--c---c-------------
Confidence 56776532 13788888876421 23446888889999999987532100 0 0
Q ss_pred CccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhh
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|+|++.+ .+++|+++++++|++++.+
T Consensus 351 -----------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 -----------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -----------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -----------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 00136899999764 6899999999999998877
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=217.48 Aligned_cols=354 Identities=11% Similarity=0.050 Sum_probs=213.7
Q ss_pred hcccccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCce-eEEecCCchhhHHHHHhhh
Q psy16512 68 TGAGVYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHY-SVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 68 a~~~~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~-~iv~t~g~t~al~~~~~al 144 (815)
++....++.+++++...+.+.. .++|++.+........+++ .++++++++||++.+++ ..++++|+|+|+.+++.++
T Consensus 61 as~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al 140 (490)
T 2a7v_A 61 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL 140 (490)
T ss_dssp TTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH
Confidence 3455678999999877665432 3677654222211112244 67799999999988654 2466778899999999999
Q ss_pred ccCCCc-EEEecCCCcchhh--H------HHHhhccc-eEE--cC-chhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 145 EFNEGS-FIYLTDNHTSVLG--M------RELVKTNQ-IYS--FS-VDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 145 ~~~~gd-vv~~~~~h~s~~~--~------~~~~~~~g-~v~--~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
. ++|| |++...+|.+... . ....+..- .++ ++ .++.+|++.+++++. ..++++|++..++
T Consensus 141 ~-~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~------~~~~klIi~~~s~ 213 (490)
T 2a7v_A 141 L-QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR------LFRPRLIIAGTSA 213 (490)
T ss_dssp C-CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHH------HHCCSEEEECCSS
T ss_pred c-CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHh------hcCCcEEEEcCCC
Confidence 8 9999 7777777755321 1 11222111 233 33 245778888877553 1357899887777
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEE
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
|+ ...|+++|.++|+ ++|+++++|++|+.|. .+.++. ++|++++|+||+|++|.| |+++
T Consensus 214 ~~--~~~dl~~i~~ia~-----------~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~ 277 (490)
T 2a7v_A 214 YA--RLIDYARMREVCD-----------EVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp CC--SCCCHHHHHHHHH-----------HTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEE
T ss_pred CC--CcccHHHHHHHHH-----------HcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hhee
Confidence 65 5679999999999 8999999999987553 222232 589999999999877877 9999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~ 364 (815)
++++... +.+. .+.... + .+.............|+++...++++..|+..... ....+ ++..++++++.+
T Consensus 278 ~~~~~~~-~~~~---~~~~~~---~-~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~ 349 (490)
T 2a7v_A 278 YRKGVKA-VDPK---TGREIP---Y-TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMAD 349 (490)
T ss_dssp EECSEEE-EETT---TEEEEE---C-CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred eccchhc-cccc---ccchhh---H-HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 9876421 0000 000000 0 00000000000112356788888888888776542 22333 888999999999
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.|.+. ++++..+. ...+++.+.+... .++..++.+.|.+.||.+..+..+... +
T Consensus 350 ~L~~~-------G~~v~~~~------t~t~lv~vdl~~~---g~~~~~~~~~L~~~GI~v~~~~~p~d~---~------- 403 (490)
T 2a7v_A 350 ALLER-------GYSLVSGG------TDNHLVLVDLRPK---GLDGARAERVLELVSITANKNTCPGDR---S------- 403 (490)
T ss_dssp HHHHT-------TCEEGGGS------CSSSEEEEECTTT---TCCHHHHHHHHHHTTEECEEECCTTCC---C-------
T ss_pred HHHHc-------CcEEecCC------CCCeEEEEEeCCC---CCCHHHHHHHHHhCCeEEecCccCCCC---C-------
Confidence 99987 78887532 1256777776532 133456888999999999865322110 0
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccC----CCCHHHHHHHHHHHHHHHhhc
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH----ASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~----~~t~edi~~lv~~L~~~~~~~ 498 (815)
...++.||++... ..+++|+++++++|.+++...
T Consensus 404 --------------------p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 404 --------------------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp --------------------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 0113679997643 358999999999999987643
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=209.13 Aligned_cols=345 Identities=13% Similarity=0.057 Sum_probs=212.4
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
...++.+.+++.+.+....+.++ ... ..++++.+++++|.+ + +++++|+|+|+.+++.++..++||
T Consensus 32 p~~~~~~~~a~~~~~~~~~~~~~------~~~----~~~l~~~la~~~~~~--~--~i~~~~gt~al~~~l~~~~~~~gd 97 (391)
T 3dr4_A 32 PRLDGNERDYVLECMDTTWISSV------GRF----IVEFEKAFADYCGVK--H--AIACNNGTTALHLALVAMGIGPGD 97 (391)
T ss_dssp CCCCSSHHHHHHHHHHHTCCSSC------SHH----HHHHHHHHHHHHTCS--E--EEEESSHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHcCCccCC------ChH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 34567777777766654333211 233 789999999999986 3 899999999999999999338898
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|+++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+ ++||||...|+++|.++|
T Consensus 98 ~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~-------~~~~~~v~---~~n~tG~~~~~~~i~~l~ 167 (391)
T 3dr4_A 98 EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALI-------TPRTKAIM---PVHLYGQICDMDPILEVA 167 (391)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhc-------CCCceEEE---EECCCCChhhHHHHHHHH
Confidence 9999999988766554433222 455553 3356777776644 46788887 468999999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCCCCCC-CCCcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ-HQPDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGG 303 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~-~~~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~ 303 (815)
+ ++|+++|+|++++.|....+... .-.|+.++||+ |++++ ...|+++.+++ +.+.+++...++.
T Consensus 168 ~-----------~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~~K~l~~-g~gg~~~~~~~~~~~~~~~~~~~g~ 235 (391)
T 3dr4_A 168 R-----------RHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNAIITT-GEGGMITTNDDDLAAKMRLLRGQGM 235 (391)
T ss_dssp H-----------HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBTTSSSCC-BSCEEEEESCHHHHHHHHHHHBTTC
T ss_pred H-----------HcCCEEEEECcccccceECCeeecccCCEEEEECCCCCcCCc-CCeEEEEECCHHHHHHHHHHHhcCC
Confidence 9 89999999999988764333211 11477777755 99883 23677777654 4444433322221
Q ss_pred eEEEEecCCcccccccCccccccCCC-CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGT-VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt-~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.. ...+. ....|. .....+.++ .++..+..+....++.+++++++.+.|.++ +++++.
T Consensus 236 ~~-----~~~~~--------~~~~g~~~~~~~l~aa-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~ 294 (391)
T 3dr4_A 236 DP-----NRRYW--------FPIVGFNYRMTNIQAA-IGLAQLERVDEHLAARERVVGWYEQKLARL-------GNRVTK 294 (391)
T ss_dssp CT-----TSTTC--------CSSCCCBCBCCHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHGGG-------TTSEEC
T ss_pred CC-----CCccc--------ccccccccCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CccccC
Confidence 10 00000 000111 111122111 222222222222377888899999999876 344443
Q ss_pred C--CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc---cCCchhhhh-hcCCCHHHHHHHhhcCCcc
Q psy16512 383 D--TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC---HCNPGSCQR-FLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 383 ~--~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~---~~~~~~~~~-~~g~~~~~~~~~~~~~~~c 456 (815)
+ ... ......++.+.++... ..+..++.+.|.++||.+++|. +|.+..... ...+....
T Consensus 295 ~~~~~~--~~~~~~~~~i~~~~~~--~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~----------- 359 (391)
T 3dr4_A 295 PHVALT--GRHVFWMYTVRLGEGL--STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAE----------- 359 (391)
T ss_dssp CCCCTT--SCCCCSSEEEEECSSC--SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHH-----------
T ss_pred cCCCCC--CcceeEEEEEEECCcc--chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHH-----------
Confidence 3 110 1122345666665421 2344568899999999999875 333322110 00010000
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
....+.+|++++.++|++||++++++|++++
T Consensus 360 --------~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 360 --------ACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp --------HHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred --------HHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 0113689999999999999999999998754
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=213.94 Aligned_cols=339 Identities=11% Similarity=0.036 Sum_probs=208.4
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
..++++.+++.+.+....+. + ... +.++++.+++++|.+ + +++++|+|+|+.+++.++..++||
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~-~------~~~----~~~l~~~la~~~~~~--~--~~~~~sGt~al~~al~~~~~~~gd~ 77 (367)
T 3nyt_A 13 RIKDKIDAGIQRVLRHGQYI-L------GPE----VTELEDRLADFVGAK--Y--CISCANGTDALQIVQMALGVGPGDE 77 (367)
T ss_dssp HHHHHHHHHHHHHHHHCCCS-S------CHH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTCCTTCE
T ss_pred ccCHHHHHHHHHHHhcCCcc-C------ChH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHhCCCCcCE
Confidence 44566777776655432221 1 123 789999999999986 3 899999999999999999448998
Q ss_pred EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
|+++..+|+++.......+... .++++++ ..++++.+++++ ++++++|+ ++|++|...|+++|.++|+
T Consensus 78 Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~~~~G~~~~~~~i~~la~ 147 (367)
T 3nyt_A 78 VITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAI-------TPRTKAII---PVSLYGQCADFDAINAIAS 147 (367)
T ss_dssp EEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhc-------CcCCcEEE---eeCCccChhhHHHHHHHHH
Confidence 9999999988766554443222 5555554 456777777644 46788887 6789999999999999999
Q ss_pred ccccccccccCCCCeEEEEecccccCCCCCCCCCCCC--cEEEEcc--ccccccCCc-ceEEEEec-ccccccCcccccC
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQP--DFISISF--YKMFGYPTG-LGALIVKQ-KSAHVLNKTFYGG 302 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~--D~vv~S~--~K~~g~p~G-~G~l~~~~-~~~~~l~~~~~g~ 302 (815)
++|+++|+|++++.|.. .+....+. |++++|| ||+++ +.| .|+++.++ ++.+.+++....+
T Consensus 148 -----------~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~-~~g~gg~~~~~~~~l~~~~~~~~~~g 214 (367)
T 3nyt_A 148 -----------KYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLG-CYGDGGAIFTNDDELATAIRQIARHG 214 (367)
T ss_dssp -----------HTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHTBTT
T ss_pred -----------HcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCC-CcCceeEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999987754 22222222 9999997 89999 544 56777753 4544444332222
Q ss_pred ceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.. . .+.. ....+ ....+....++.... +..+....++.+++++++.+.|+++ ++.+..
T Consensus 215 ~~-~---~~~~-------~~~g~-~~~~~~~~aa~~~~~---l~~~~~~~~~~~~~~~~~~~~L~~~-------~~~~~~ 272 (367)
T 3nyt_A 215 QD-R---RYHH-------IRVGV-NSRLDTLQAAILLPK---LEIFEEEIALRQKVAAEYDLSLKQV-------GIGTPF 272 (367)
T ss_dssp EE-E---TTEE-------CSCCC-BCCCCHHHHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHT-------TCCCCC
T ss_pred CC-c---Ccee-------eccCc-CCCccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccC-------CeeccC
Confidence 11 0 0000 00000 112222333322233 3333223377788889999999887 233322
Q ss_pred CCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccc
Q psy16512 383 DTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDI 462 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~ 462 (815)
... .......++.+.+. +...+.+.|.++||.++.+..+ +......+.-.. ....+
T Consensus 273 ~~~--~~~~~~~~~~~~~~-------~~~~l~~~L~~~GI~~~~~~~~-~~~~~~~~~~~~--------------~~~~~ 328 (367)
T 3nyt_A 273 IEV--NNISVYAQYTVRMD-------NRESVQASLKAAGVPTAVHYPI-PLNKQPAVADEK--------------AKLPV 328 (367)
T ss_dssp CCT--TEECCCSSEEEECS-------SHHHHHHHHHHHTCCCBCSCSS-CGGGSGGGCCTT--------------CCCHH
T ss_pred CCC--CCceeeEEEEEEeC-------CHHHHHHHHHHCCCceeccCCC-ccccChhhhccC--------------CCChH
Confidence 111 00111223333332 2345888999999999876431 212222221000 00000
Q ss_pred cCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 463 IDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 463 ~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+......+|++++...|++||++++++|++.
T Consensus 329 ~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 329 GDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp HHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred HHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 01112478999999999999999999999764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=216.41 Aligned_cols=341 Identities=11% Similarity=0.053 Sum_probs=212.4
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++.+.+++.+.+....+. .... ..++++.+++++|.+ + +++++|+++|+.+++.++..++|| |
T Consensus 42 ~~~~v~~a~~~~~~~~~y~-------~~~~----~~~l~~~la~~~~~~--~--~v~~~~Gt~a~~~~l~~~~~~~gd~v 106 (399)
T 2oga_A 42 LRAETDAAIARVLDSGRYL-------LGPE----LEGFEAEFAAYCETD--H--AVGVNSGMDALQLALRGLGIGPGDEV 106 (399)
T ss_dssp THHHHHHHHHHHHHHTCCS-------SSHH----HHHHHHHHHHHTTSS--E--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHhcCCCC-------Cchh----HHHHHHHHHHHHCCC--e--EEEecCHHHHHHHHHHHhCCCCcCEE
Confidence 3477777777665432221 1133 788999999999985 2 778888899999999998338898 8
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
+++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+ ++||||.+.|+++|.++|+
T Consensus 107 l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~---~~n~tG~~~~l~~i~~l~~- 175 (399)
T 2oga_A 107 IVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAI-------TPRTRALL---PVHLYGHPADMDALRELAD- 175 (399)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHC-------CTTEEEEC---CBCGGGCCCCHHHHHHHHH-
T ss_pred EECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhc-------CCCCeEEE---EeCCcCCccCHHHHHHHHH-
Confidence 899988888665444332222 445544 2356666666543 35688777 4689999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCCCCC--CcEEEEcc--ccccccCCc-ceEEEEe-cccccccCcccccCc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ--PDFISISF--YKMFGYPTG-LGALIVK-QKSAHVLNKTFYGGG 303 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~--~D~vv~S~--~K~~g~p~G-~G~l~~~-~~~~~~l~~~~~g~~ 303 (815)
++|+++|+|++++.+... +...++ .|++++|+ +|+++ ++| .|+++.+ +++++.+++....+.
T Consensus 176 ----------~~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~-~~G~~g~~~~~~~~~~~~l~~~~~~g~ 243 (399)
T 2oga_A 176 ----------RHGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLG-CFGDGGAVVTGDPELAERLRMLRNYGS 243 (399)
T ss_dssp ----------HHTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSC-CSSCCEEEEESCHHHHHHHHHHHBTTC
T ss_pred ----------HcCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCC-cCCceEEEEeCCHHHHHHHHHHHhcCc
Confidence 899999999999877532 322233 69999999 59999 545 6777776 566555544322221
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
.. .+. .....+ ..+.+....+++.++++.+.. ..++..++++++.+.|.++ |++++...
T Consensus 244 ~~-------~~~----~~~~g~-~~~~~~~~~a~~~~~l~~~~~---~~~~~~~~~~~l~~~L~~~------~g~~~~~~ 302 (399)
T 2oga_A 244 RQ-------KYS----HETKGT-NSRLDEMQAAVLRIRLAHLDS---WNGRRSALAAEYLSGLAGL------PGIGLPVT 302 (399)
T ss_dssp SS-------TTC----CCSCCC-BCCCCHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHHHTTTC------TTCBCCCC
T ss_pred cc-------ccc----cccccc-CCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccC------CCccccCC
Confidence 10 000 000000 123455666655566655443 2366778888898888877 56665432
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh---hhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC---QRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~---~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
.. .....++.|.+... +..++.+.|.++||.++.++. .+... ...+|.+... |.
T Consensus 303 ~~----~~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~-~~~~~~~~~~~~~~~~~~----------~p--- 359 (399)
T 2oga_A 303 AP----DTDPVWHLFTVRTE-----RRDELRSHLDARGIDTLTHYP-VPVHLSPAYAGEAPPEGS----------LP--- 359 (399)
T ss_dssp CT----TEECCCSSEEEECS-----SHHHHHHHHHHTTBCCBCSCS-SCGGGSHHHHTTSCCTTS----------CH---
T ss_pred CC----CCcceeEEEEEECC-----CHHHHHHHHHHCCCceecCCC-CccccchhhcccCCCCCC----------Ch---
Confidence 11 11111223444322 234588888899999987542 11111 0111211000 00
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+....+++||+++.++|++|+++++++|++++.
T Consensus 360 -~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~ 394 (399)
T 2oga_A 360 -RAESFARQVLSLPIGPHLERPQALRVIDAVREWAE 394 (399)
T ss_dssp -HHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence 00000126899999999999999999999999764
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=209.65 Aligned_cols=350 Identities=11% Similarity=0.077 Sum_probs=220.5
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
+++++.+++.+.+... +.++. ... ..++++.+++++|. ++ +++|+|+|+|+.+++.++..++|| |
T Consensus 10 ~~~~v~~a~~~~~~~~-~~~~~-----g~~----~~~l~~~la~~~~~--~~--v~~~~ggt~al~~~~~~l~~~~gd~V 75 (394)
T 1o69_A 10 MGGNELKYIEEVFKSN-YIAPL-----GEF----VNRFEQSVKDYSKS--EN--ALALNSATAALHLALRVAGVKQDDIV 75 (394)
T ss_dssp --CCHHHHHHHHHHHT-TTSCT-----THH----HHHHHHHHHHHHCC--SE--EEEESCHHHHHHHHHHHTTCCTTCEE
T ss_pred CCHHHHHHHHHHHHcC-CccCC-----ChH----HHHHHHHHHHHhCC--Cc--EEEeCCHHHHHHHHHHHcCCCCCCEE
Confidence 4566777776665432 22221 233 78999999999997 33 999999999999999998338898 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcc
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNH 230 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~ 230 (815)
+++..+|+++.......+... .++++.+..++++.++++++ ....++++|++++ ++|...|+++|.++|+
T Consensus 76 l~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~----~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~-- 146 (394)
T 1o69_A 76 LASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIK----ECEKKPKALILTH---LYGNAAKMDEIVEICK-- 146 (394)
T ss_dssp EEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHH----HCSSCCCEEEEEC---GGGCCCCHHHHHHHHH--
T ss_pred EECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHh----cccCCceEEEEEC---CCCChhhHHHHHHHHH--
Confidence 999999999876655533222 55555444567777776553 1111689999885 8999999999999999
Q ss_pred ccccccccCCCCeEEEEecccccCCCCCCCC--C-CCCcEEEEccccccccCCcceEEEEe-cccccccCcccccCceEE
Q psy16512 231 VFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--Q-HQPDFISISFYKMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTVK 306 (815)
Q Consensus 231 ~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--~-~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~~ 306 (815)
++|+++|+|++++.|....+.. . .++|++++|.||.++ |.++|+++++ +++++.+++....+..
T Consensus 147 ---------~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~-- 214 (394)
T 1o69_A 147 ---------ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARE-- 214 (394)
T ss_dssp ---------HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCC--
T ss_pred ---------HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccc--
Confidence 8999999999998765432211 1 246677777799998 6679999996 5666655432211110
Q ss_pred EEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCC
Q psy16512 307 ISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDY 386 (815)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~ 386 (815)
...+ ......++..++.+..+.+++.. ++++.. ..++.+++++++.+.|.++ ++++.+..
T Consensus 215 ----~~~~---~~~~~~g~~~~~~~~~aa~~l~~-l~~l~~---~~~~~~~~~~~l~~~L~~~--------~~~~~~~~- 274 (394)
T 1o69_A 215 ----NCLH---YEHLDYGYNYRLSNVLGAIGVAQ-MEVLEQ---RVLKKREIYEWYKEFLGEY--------FSFLDELE- 274 (394)
T ss_dssp ----SSSS---CCCSSCCCBCBCCHHHHHHHHHH-HTTHHH---HHHHHHHHHHHHHHHHTTT--------EECCCCCT-
T ss_pred ----cCcc---ccccccCcccCcCHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhccc--------ccccCCCC-
Confidence 0000 01112345556777766666543 444333 2378888899999888763 34443321
Q ss_pred CCCCccc--ceEEEEEecCC---------------C--CccCHHHHHHhhhcCCcEeccCccCCc--hhhhh--hcCCCH
Q psy16512 387 GESKYQG--NIVNFNLLHKD---------------G--TYYGYSEVQNLANLKKIQLRTGCHCNP--GSCQR--FLGLSD 443 (815)
Q Consensus 387 ~~~~~~~--~i~~f~~~~~~---------------~--~~~~~~~v~~~l~~~gI~v~~g~~~~~--~~~~~--~~g~~~ 443 (815)
...+ +++.+.++... + ..++..++.+.|.++||.+++|..|.. +.... ..++..
T Consensus 275 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~ 351 (394)
T 1o69_A 275 ---NSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGN 351 (394)
T ss_dssp ---TEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSH
T ss_pred ---CCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChH
Confidence 1112 25677765210 0 012345688889999999999865422 11100 001111
Q ss_pred HHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 444 ITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 444 ~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
.+-. ....+|++.+.++|++|+++++++|++++..++
T Consensus 352 ~~~~-------------------~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~~ 388 (394)
T 1o69_A 352 SELF-------------------FQKGICLPSGTAMSKDDVYEISKLILKSIKAGS 388 (394)
T ss_dssp HHHH-------------------HHHEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred HHHH-------------------hcCeEEccCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 1100 014566667999999999999999999765554
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=211.14 Aligned_cols=325 Identities=13% Similarity=0.031 Sum_probs=193.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHH-Hhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRE-LVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~-~~~~~g--~v~~~~~~~~ 182 (815)
.+++++++++++|.+. .++++++++|+.+++.++. ++|| ||++...|++...... .+...| .+.++.+
T Consensus 84 ~~~le~~lA~l~g~~~----~v~~~sG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~--- 155 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG----VLALGSGMAAISTAILTLA-RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM--- 155 (430)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC---
Confidence 8899999999999854 4555566799999999997 8999 8889989988766333 555566 4444433
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++ .++++|++|++++++||+|.+.|+++|.++|+ ++|+++|+|++++.+.. .+...
T Consensus 156 d~~~l~~-------ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~-----------~~g~~livD~a~~~~~~-~~~~~ 216 (430)
T 3ri6_A 156 DSLAVEH-------ACDETTKLLFLETISNPQLQVADLEALSKVVH-----------AKGIPLVVDTTMTPPYL-LEAKR 216 (430)
T ss_dssp CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------TTTCCEEEECTTSCTTT-CCGGG
T ss_pred CHHHHHH-------hhCCCCeEEEEECCCCCCCeecCHHHHHHHHH-----------HcCCEEEEECCCccccc-CChHH
Confidence 4555554 33468999999999999999999999999999 89999999999988765 34445
Q ss_pred CCCcEEEEccccccccCC-cceEEEE-eccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPT-GLGALIV-KQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~-G~G~l~~-~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|++|+++++. ++|.+++ +.+. ... ...+..... . .....+.........+...++++....+.+.
T Consensus 217 ~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~-~~~~~~l~~-~--~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l 292 (430)
T 3ri6_A 217 LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKS-LPSLAPYYA-K--AGPMAFLYKARKEVFQNLGPSLSPHNAYLQS 292 (430)
T ss_dssp GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGG-STTTHHHHH-H--HGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred cCCEEEEECCcccccCCCCceEEEEEECChHHhhh-ccchhhhhh-h--hchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 689999999999999442 2455554 3221 100 000000000 0 0000000000000001123344444433333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCCC--------cccc-eEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGESK--------YQGN-IVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~~--------~~~~-i~~f~~~~~~~~~~~ 409 (815)
.+++.+. ..+++..+.+.++.+.|++. |.++ +..|.-.+.+. ..|+ +++|.+++.. .
T Consensus 293 ~~l~~l~---~r~~~~~~na~~la~~L~~~------p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~----~ 359 (430)
T 3ri6_A 293 LGLETMA---LRIERSCQNAQELAHWLLSI------PQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKE----A 359 (430)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHTTC------TTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH----H
T ss_pred hhhhhHH---HHHHHHHHHHHHHHHHHhCC------CCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHH----H
Confidence 4444432 33467788888888999877 6665 44443111010 2367 9999987311 1
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.+...++.++.|..++ ++....+..+++++..+ .|..++.||+|+|..+.++-++.
T Consensus 360 ~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~---------------~g~~~~liRlsvG~E~~~dl~~d 424 (430)
T 3ri6_A 360 SYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLK---------------LEISPAMMRLSVGIEEIEDLKED 424 (430)
T ss_dssp HHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CG---------------GGSCTTEEEEECCSSCHHHHHHH
T ss_pred HHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHh---------------cCCCCCeEEEEeccCCHHHHHHH
Confidence 2246667777777787776544 22222233333322111 14557899999997554444444
Q ss_pred HHHH
Q psy16512 487 FLSF 490 (815)
Q Consensus 487 lv~~ 490 (815)
|-++
T Consensus 425 l~~a 428 (430)
T 3ri6_A 425 ILQA 428 (430)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4333
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-20 Score=208.05 Aligned_cols=364 Identities=9% Similarity=-0.016 Sum_probs=215.5
Q ss_pred ccchhhHHHHHHHHhhcccc-CCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 72 VYSQSQMNQTIEQLKENIFS-HPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~-np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.+++.+.+++.+.+....+. .+. ....... .+++++.+++++|++ + +++++|+|+|+.+++.++..++||
T Consensus 13 ~~~~~~~~a~~~~~~~~~~~~~~~-~~g~~~l----~~~l~~~la~~~g~~--~--~i~~~~gt~al~~~~~~~~~~~gd 83 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSNRWAISGY-WTGEESM----ERKFAKAFADFNGVP--Y--CVPTTSGSTALMLALEALGIGEGD 83 (418)
T ss_dssp CCCHHHHHHHHHHHHHTCCSTTSB-CCSSCCH----HHHHHHHHHHHHTCS--E--EEEESCHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHHHHHhcCCccccCc-ccCCHHH----HHHHHHHHHHHhCCC--c--EEEeCCHHHHHHHHHHHcCCCCcC
Confidence 45677888887766543222 111 1122333 788999999999986 2 677888899999999999338898
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHh
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|+++..+|+++.......+... .+++++ +..++++.+++++ ++++++|+++ |+||...|+++|.++|
T Consensus 84 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~~G~~~~~~~i~~~~ 153 (418)
T 2c81_A 84 EVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAI-------TDKTKAIIPV---HLFGSMANMDEINEIA 153 (418)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGC-------CTTEEEECCB---CCTTCCCCHHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhh-------CCCCeEEEEe---CCcCCcccHHHHHHHH
Confidence 9999999988866554433222 455554 3456777776644 4578888864 6899999999999999
Q ss_pred hccccccccccCCCCeEEEEecccccCCC-C-CCCCCCCCcEEEEcc--ccccccCCcceEEEEe-cccccccCcccccC
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSN-M-LDLKQHQPDFISISF--YKMFGYPTGLGALIVK-QKSAHVLNKTFYGG 302 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~-~dl~~~~~D~vv~S~--~K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~ 302 (815)
+ ++|+++|+|++++.+.. . ..+..+ .|+++.|+ ||+++ +...|+++.+ +++++.+++....+
T Consensus 154 ~-----------~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~-~g~~g~~~~~~~~l~~~~~~~~~~~ 220 (418)
T 2c81_A 154 Q-----------EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLT-AGEGGIIVTKNPRLFELIQQLRADS 220 (418)
T ss_dssp H-----------HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSC-SSSCEEEEESCHHHHHHHHHHHBTT
T ss_pred H-----------HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccC-CCCeEEEEECCHHHHHHHHHHHHhC
Confidence 9 89999999999988752 1 111122 36777777 99999 5347888885 46655554433222
Q ss_pred ceEEEEecCCcccccccCcccccc--CCCCChh------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCC
Q psy16512 303 GTVKISMANENFHIKKDGLFEKFE--DGTVNYL------AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~--~gt~~~~------~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
.... .. .. .....+. .++.... ..+....++..+..+....++.+++++++.+.|.++
T Consensus 221 ~~~~---~~-~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~----- 286 (418)
T 2c81_A 221 RVYC---DD-SS-----ELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSKI----- 286 (418)
T ss_dssp EEEC---SC-GG-----GCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTS-----
T ss_pred cccc---cc-cc-----ccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 2110 00 00 0000111 1111111 111111111222222222377778889999999887
Q ss_pred CCcEEEcCCCCCCCC-Cccc-ceEEEEEecCCCCccCHHHHHHhhhcC-CcE---eccCccCCchhhhhh---cCCC---
Q psy16512 375 QPLVELYHDTDYGES-KYQG-NIVNFNLLHKDGTYYGYSEVQNLANLK-KIQ---LRTGCHCNPGSCQRF---LGLS--- 442 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~-~~~~-~i~~f~~~~~~~~~~~~~~v~~~l~~~-gI~---v~~g~~~~~~~~~~~---~g~~--- 442 (815)
|+++++.+.. . .... .++.+.+++.....++..++.+.|.++ ||. ++.|+.+. +.... ++..
T Consensus 287 -~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~--~~~~~~~~~~~~~~~ 360 (418)
T 2c81_A 287 -DGIKVMKRPP---QVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPV--HKNPLFCPWTKNRYL 360 (418)
T ss_dssp -TTEEECCCCT---TEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCG--GGCTTCCGGGCTTSC
T ss_pred -CCcccCCCCC---CCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCccccccccccc--ccCchhccccccccc
Confidence 7888874321 0 0112 356677753100012345688888888 999 88876332 11110 0000
Q ss_pred ------HHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC-CHHHHHHHHHHHHHHHh
Q psy16512 443 ------DITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS-NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 443 ------~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~-t~edi~~lv~~L~~~~~ 496 (815)
.+.+ ..+ .....+....+.||++++.++ |++||++++++|++++.
T Consensus 361 ~~~~~~~~~~----~~~-----~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~ 412 (418)
T 2c81_A 361 KSVRKTEAYW----RGL-----HYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR 412 (418)
T ss_dssp HHHHCCHHHH----HTC-----CCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccc----ccC-----CChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH
Confidence 0000 000 000000001368999999999 99999999999999764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=213.80 Aligned_cols=296 Identities=12% Similarity=0.045 Sum_probs=194.1
Q ss_pred HHHHHHHHHhHcC-C-CCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-h
Q psy16512 107 IDQMRTKILQYFN-T-DSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-D 180 (815)
Q Consensus 107 ~~~~r~~la~~~g-~-~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~ 180 (815)
..++|+.+++++. . .++ ..+|++|+|+++|+.+++.++. ++|| |++..+.|+++.......+... .++++.+ .
T Consensus 82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 160 (418)
T 3rq1_A 82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT-EPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEHN 160 (418)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS-CTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTTS
T ss_pred hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc-CCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCCC
Confidence 5567777777651 1 122 1149999999999999999997 8999 8888888877665544433322 4555333 3
Q ss_pred hhcchhhhhhhhhhhhhcCCCcc-EEEEecc-cCCCccccChHHHHHHhhccccccccccC------CCCeEEEEecccc
Q psy16512 181 ARNMLNEFKESQENVENMRHSNS-LFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCS------RSNCFVLLDAATY 252 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~-lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~------~~gi~vivD~a~~ 252 (815)
.++++.++++++. ...++++ +++++++ +||||.++|.+++.++++ .|+ ++|+++|+|+++.
T Consensus 161 ~~d~~~l~~~l~~---~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~--------~~~~~~~~~~~~~~li~De~y~ 229 (418)
T 3rq1_A 161 NFNHEAFQNRVNE---LAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILN--------FLKDLVAIGRNNVIIGIDVAYL 229 (418)
T ss_dssp SBCHHHHHHHHHH---HHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHHHHTSSCEEEEEEECTTG
T ss_pred CcCHHHHHHHHHH---hhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHHhhhccCCCeEEEEecccc
Confidence 6677777765531 1112455 8899999 999999999999888887 566 7899999999974
Q ss_pred cCCC------C--CCCCCCCCc---EEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccc
Q psy16512 253 CGSN------M--LDLKQHQPD---FISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 253 ~g~~------~--~dl~~~~~D---~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
.... + ........+ +++.|+||.|| ++| +|++++ ++++++.+.......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-------------- 294 (418)
T 3rq1_A 230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFT-MYGQRVGAMIGISDDEEIADEFFEVNKST-------------- 294 (418)
T ss_dssp GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTT-CCSSCCEEEEEEESSHHHHHHHHHHHHHH--------------
T ss_pred cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCc-CcCCcceEEEEEeCCHHHHHHHHHHHHHH--------------
Confidence 2110 0 011122334 77789999998 556 799998 777766553221000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHH------hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTME------KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGES 389 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~------~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~ 389 (815)
.+....+++..+..++..+++... +....+ ++.+++++++.+.|+++ +++++.+..
T Consensus 295 ------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~~~~---- 357 (418)
T 3rq1_A 295 ------SRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-------GLPMLPYRG---- 357 (418)
T ss_dssp ------HHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TCCCCCCCS----
T ss_pred ------HhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCCCc----
Confidence 000112456666666666553321 111122 66778888888888876 455554432
Q ss_pred CcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCce
Q psy16512 390 KYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTG 469 (815)
Q Consensus 390 ~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 469 (815)
+.++++.+. +..++.+.|.++||.+++| .+
T Consensus 358 ---~~~~~~~~~-------~~~~~~~~l~~~gi~v~~g----------------------------------------~~ 387 (418)
T 3rq1_A 358 ---GFFITIPTD-------SANAICEELKKEHIYVIAL----------------------------------------AN 387 (418)
T ss_dssp ---SSEEEEECT-------THHHHHHHHHHTTEECEEC----------------------------------------SS
T ss_pred ---eEEEEcCCC-------CHHHHHHHHHhCCEEEecC----------------------------------------CC
Confidence 334444332 2235778889999999875 26
Q ss_pred EEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 470 SIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 470 ~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++|+|++ ..+++++++++++|++++.+
T Consensus 388 ~iRis~~-~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 388 GIRIAAC-GIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp EEEEEGG-GSCHHHHTTHHHHHHHHHHH
T ss_pred CeEEEEe-cCCHHHHHHHHHHHHHHHHH
Confidence 7999987 45899999999999998754
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=214.68 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=212.4
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+... ..++|++. +..........+.+++.+++++|+++++ |++++| |+|+.+++.++. +
T Consensus 34 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--i~~~sG-t~a~~~~~~~~~-~ 109 (417)
T 3n0l_A 34 ENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFAN--VQPNSG-SQANQGVYAALI-N 109 (417)
T ss_dssp CCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSSH-HHHHHHHHHHHS-C
T ss_pred cCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcc--eEeccH-HHHHHHHHHHhc-C
Confidence 3445788888877665322 12344322 1111111111446788999999997764 777777 899999999997 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhcc--c--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTN--Q--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~--g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
+|| |++...+|+++.......... + . ++++.++.++++.++++++ .+++++|++++++| |...|+
T Consensus 110 ~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~--G~~~~l 181 (417)
T 3n0l_A 110 PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAK------KEKPKLIVCGASAY--ARVIDF 181 (417)
T ss_dssp TTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHH------HHCCSEEEECCSSC--CSCCCH
T ss_pred CCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHH------hcCCeEEEECCccc--CccCCH
Confidence 999 888888887754422221122 2 2 3345444567777776543 13689999888775 999999
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEe-cccccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVK-QKSAHV 294 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~-~~~~~~ 294 (815)
++|.++|+ ++|+++|+|++|+.|.. +..+. ..|++++|+||+|++|.| |+++.+ +++.+.
T Consensus 182 ~~i~~l~~-----------~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~ 247 (417)
T 3n0l_A 182 AKFREIAD-----------EIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKK 247 (417)
T ss_dssp HHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHH
Confidence 99999999 89999999999865543 22222 479999999998876764 999988 466555
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
+.+.... ...++++...+.++..++....... ..+ ++..++++++.+.|.+.
T Consensus 248 ~~~~~~~-----------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--- 301 (417)
T 3n0l_A 248 INSAIFP-----------------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR--- 301 (417)
T ss_dssp HHHHHTT-----------------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HhhhhCC-----------------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC---
Confidence 4322111 1134566677777766665532111 222 78888889999999875
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++++... ..++++.+.+... .++..++.+.|.++||.++.+....... .
T Consensus 302 ----g~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~--~--------------- 351 (417)
T 3n0l_A 302 ----KFKLVSDG------TDNHLVLMSFLDR---EFSGKDADLALGNAGITANKNTVPGEIR--S--------------- 351 (417)
T ss_dssp ----TCEEGGGS------CSSSEEEEECTTS---SSCHHHHHHHHHHTTEECEECCCTTCCS--C---------------
T ss_pred ----CceeccCC------CCceEEEEEcccC---CCCHHHHHHHHHHcCeEEeccccCCCCc--c---------------
Confidence 67776521 1245666665422 1334568888999999998653211100 0
Q ss_pred CCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcC
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~ 499 (815)
......+|+++... .+++++++++++|++++.+..
T Consensus 352 ------------~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 390 (417)
T 3n0l_A 352 ------------PFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVN 390 (417)
T ss_dssp ------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred ------------cCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhccc
Confidence 01135799997643 368999999999999887654
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=214.30 Aligned_cols=336 Identities=13% Similarity=0.065 Sum_probs=207.3
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChh-hhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNS-VLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~-~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+.. ...++|++.+ ..........+.+++++++++|++++. +++++| ++|+..++.++. +
T Consensus 39 ~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--v~~~sG-s~a~~~a~~~~~-~ 114 (420)
T 3gbx_A 39 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYAN--VQPHSG-SQANFAVYTALL-Q 114 (420)
T ss_dssp CCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEE--CCCSSH-HHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCce--eEecCc-HHHHHHHHHHhc-C
Confidence 334678888888776633 2224454331 111111112456778999999997654 556655 789999999987 8
Q ss_pred CCc-EEEecCCCcchhh-HH--HHhhccc---eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh
Q psy16512 148 EGS-FIYLTDNHTSVLG-MR--ELVKTNQ---IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL 220 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~-~~--~~~~~~g---~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l 220 (815)
+|| |++...+|+++.. .. ...+... .++++.++..+++.++++++ ..++++|++++++|+ ...|+
T Consensus 115 ~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~~--~~~~l 186 (420)
T 3gbx_A 115 PGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAK------EHKPKMIIGGFSAYS--GVVDW 186 (420)
T ss_dssp TTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHH------HHCCSEEEECCTTCC--SCCCH
T ss_pred CCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHH------hcCCeEEEEecCccC--CccCH
Confidence 999 8888888887432 11 1111111 33445445577777776553 124899999888875 57899
Q ss_pred HHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCCcEEEEccccccccCCcceEEEEec---ccc
Q psy16512 221 SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ---KSA 292 (815)
Q Consensus 221 ~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~---~~~ 292 (815)
++|.++|+ ++|+++|+|++|+.+.. +..+. .+|+++.|+||++++|.| |+++.++ ++.
T Consensus 187 ~~l~~l~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~ 252 (420)
T 3gbx_A 187 AKMREIAD-----------SIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELY 252 (420)
T ss_dssp HHHHHHHH-----------HTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHH
T ss_pred HHHHHHHH-----------HcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHH
Confidence 99999999 89999999999875532 22222 389999999999966876 9998887 444
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhh-HHHHHHHHHHHHHHHHhcc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKS-FTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~-~~~~~~l~~~l~~~L~~l~ 370 (815)
+.+....+. ...++++...+.++..++.... ..... .++..++++++.+.|.+.
T Consensus 253 ~~~~~~~~~-----------------------~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 308 (420)
T 3gbx_A 253 KKLNSAVFP-----------------------SAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR- 308 (420)
T ss_dssp HHHHHHHC---------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHhhhhcCC-----------------------CCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 433222111 1123556666666665554432 21122 288888999999999875
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
+++++.+. ..++++.+.+.... .+...+.+.|.++||.+++........ .
T Consensus 309 ------g~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~~~~~~--~------------- 358 (420)
T 3gbx_A 309 ------GYKVVSGG------TENHLFLLDLVDKN---LTGKEADAALGRANITVNKNSVPNDPK--S------------- 358 (420)
T ss_dssp ------TCEEGGGS------CSSSEEEEECGGGT---CCHHHHHHHHHHTTEECEEECCTTCSS--C-------------
T ss_pred ------CCeeccCC------CCCeEEEEEcCCCC---CCHHHHHHHHHHCCcEeccccCCCCcc--c-------------
Confidence 67776532 12567777765321 233457888899999998732111000 0
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCC----CHHHHHHHHHHHHHHHhhcC
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHAS----NWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~----t~edi~~lv~~L~~~~~~~~ 499 (815)
......+|++++..+ +++++++++++|++++.+..
T Consensus 359 --------------~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 359 --------------PFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNIN 397 (420)
T ss_dssp --------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred --------------cCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCcc
Confidence 001245999987653 58999999999999886654
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=222.61 Aligned_cols=309 Identities=12% Similarity=0.055 Sum_probs=218.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD----- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~----- 179 (815)
+.++++.+++++|++. .+++++|+++|+.+++.++. ++|| |+++..+|+++.......+... +++.+.+
T Consensus 207 v~~~ee~la~l~G~d~---~i~~~~Gtt~a~~~~i~al~-~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~~~g~~ 282 (755)
T 2vyc_A 207 FGESEKYAARVFGADR---SWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGII 282 (755)
T ss_dssp HHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBCTTSCB
T ss_pred HHHHHHHHHHHhCCCc---eEEECCcHHHHHHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCCccccc
Confidence 6789999999999863 37888999999999999998 9999 9999999999877655443322 4444332
Q ss_pred hhh-----cchhhhhhhhhh---hhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 180 DAR-----NMLNEFKESQEN---VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 180 ~~~-----~~~~~~~~l~~~---~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
+.+ +++.++++|++. +.+...++++++++++ |++|.+.|+++|+++|+ ++|+++++|++|
T Consensus 283 g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~-----------~~~~~livDeA~ 350 (755)
T 2vyc_A 283 GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLE-----------KTSDRLHFDEAW 350 (755)
T ss_dssp CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHT-----------TTCSEEEEECTT
T ss_pred cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHH-----------HcCCEEEEECcC
Confidence 113 667777655310 0011123459999997 79999999999999999 899999999998
Q ss_pred ccCCC--CC--CCCC-CC--CcE------EEEccccccccCCcceEEEEecc--cccccCcccccCceEEEEecCCcccc
Q psy16512 252 YCGSN--ML--DLKQ-HQ--PDF------ISISFYKMFGYPTGLGALIVKQK--SAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 252 ~~g~~--~~--dl~~-~~--~D~------vv~S~~K~~g~p~G~G~l~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+.+.. +. +... .+ +|+ ++.|+||++++|.|.|+++++++ .++.. .+
T Consensus 351 ~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~--~~----------------- 411 (755)
T 2vyc_A 351 YGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFS--RF----------------- 411 (755)
T ss_dssp CTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHH--HH-----------------
T ss_pred chhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHH--HH-----------------
Confidence 75321 10 1111 34 565 99999999998888899999876 22100 00
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhccccCCCCc---------EEEcCCCC
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQLSYSNGQPL---------VELYHDTD 385 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~---------~~l~~~~~ 385 (815)
......+..+++++..++++.+|++++... +... ++..++++++++.|+++ ++ ++++++..
T Consensus 412 --~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l------~~~~~~~~~~~~~~~~~~~ 483 (755)
T 2vyc_A 412 --NQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARL------YKEFTADGSWFFKPWNKEV 483 (755)
T ss_dssp --HHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHTTTCCCCEESSCSE
T ss_pred --HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc------cccccccccceeeccCchh
Confidence 000124567899999999999999988765 3344 88899999999999887 45 66666532
Q ss_pred CCC--------------------------------------CC----cccceEEEEEec--CCC----CccCHHHHHHhh
Q psy16512 386 YGE--------------------------------------SK----YQGNIVNFNLLH--KDG----TYYGYSEVQNLA 417 (815)
Q Consensus 386 ~~~--------------------------------------~~----~~~~i~~f~~~~--~~~----~~~~~~~v~~~l 417 (815)
... .. .....++|.+++ .++ ..++..++.+.|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L 563 (755)
T 2vyc_A 484 VTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWL 563 (755)
T ss_dssp EECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHH
T ss_pred ccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHH
Confidence 100 00 023467777763 223 124456788899
Q ss_pred hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+++||.+.... .+.+|+++++.+|++++++|+++|.++...
T Consensus 564 ~~~gI~~e~~~---------------------------------------~~~v~~~~~~g~t~~~~~~l~~al~~~~~~ 604 (755)
T 2vyc_A 564 GRHGIVPTRTT---------------------------------------DFQIMFLFSMGVTRGKWGTLVNTLCSFKRH 604 (755)
T ss_dssp HTTTCCCSEEC---------------------------------------SSEEEEECCTTCCTTTTHHHHHHHHHHHHH
T ss_pred HHCCCEEeecC---------------------------------------CCeEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 88998875310 378999999999999999999999997543
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=212.89 Aligned_cols=336 Identities=14% Similarity=0.080 Sum_probs=210.0
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-----CC--CCCceeEEecCCchhhHHHHHhhh
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-----NT--DSDHYSVIFTSGATSAIKTVSEYF 144 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-----g~--~~~~~~iv~t~g~t~al~~~~~al 144 (815)
..|..+.+++.+.+.... +.....+..... ..++|+.+++++ |. ++++ |++|+|+++|+.+++.++
T Consensus 101 ~~P~~~~~~~~~~l~~~~-~~~~~~Y~~~~G----~~~lr~~ia~~~~~~~gG~~~~~~~--i~~t~G~~~ai~~~~~~l 173 (498)
T 3ihj_A 101 SFPEDAKKRARRILQACG-GNSLGSYSASQG----VNCIREDVAAYITRRDGGVPADPDN--IYLTTGASDGISTILKIL 173 (498)
T ss_dssp SSCHHHHHHHHHHHHHC-----------CCS----CHHHHHHHHHHHHHHTTTCCCCGGG--EEEESSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-CCCCCCCCCCCC----HHHHHHHHHHHHHHhcCCCCCCccc--EEEcCCHHHHHHHHHHHH
Confidence 346666666655554311 000011222233 556777777665 34 4565 999999999999999999
Q ss_pred ccCCC----c-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc
Q psy16512 145 EFNEG----S-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT 216 (815)
Q Consensus 145 ~~~~g----d-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~ 216 (815)
. .+| | |++..+.|+++.......+... .++.++++ .++++.++++++... ...++++|++++++||||.
T Consensus 174 ~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~k~i~l~np~NPTG~ 250 (498)
T 3ihj_A 174 V-SGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAK--DHCDPKVLCIINPGNPTGQ 250 (498)
T ss_dssp C-CCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHT--TTSEEEEEEEESSCTTTCC
T ss_pred c-CCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhh--ccCCCeEEEEECCCCCCCC
Confidence 8 665 4 8888999988776665554333 56666553 557777777554110 0125899999999999999
Q ss_pred ccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCC----------CC-cEEEEccccccccCC
Q psy16512 217 KYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQH----------QP-DFISISFYKMFGYPT 280 (815)
Q Consensus 217 ~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~----------~~-D~vv~S~~K~~g~p~ 280 (815)
+++.+++.++++ .|+++++++|+|+++..... ..++... .. .+++.|+||.|.+++
T Consensus 251 v~s~~~l~~i~~--------la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~ 322 (498)
T 3ihj_A 251 VQSRKCIEDVIH--------FAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC 322 (498)
T ss_dssp CCCHHHHHHHHH--------HHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS
T ss_pred cCCHHHHHHHHH--------HHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc
Confidence 999776544443 23389999999999865332 1111110 11 267789999993255
Q ss_pred c--ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH-----------H
Q psy16512 281 G--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD-----------T 344 (815)
Q Consensus 281 G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~-----------~ 344 (815)
| +||+++ ++++++.+.... ....+++.++..++..+++ +
T Consensus 323 G~R~G~~~~~~~~~~l~~~l~~~~-------------------------~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~ 377 (498)
T 3ihj_A 323 GYRGGYMEVINLHPEIKGQLVKLL-------------------------SVRLCPPVSGQAAMDIVVNPPVAGEESFEQF 377 (498)
T ss_dssp SSCCEEEEEESCCHHHHHHHHHHH-------------------------HHSCCCCHHHHHHHHHHTCCCCTTSTTHHHH
T ss_pred ccceEEEEEecCCHHHHHHHHHHH-------------------------hccCCCCHHHHHHHHHHhcCCccCcccHHHH
Confidence 6 799884 555555442211 0122456666666666552 2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-------CccCHHH--HHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-------TYYGYSE--VQN 415 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-------~~~~~~~--v~~ 415 (815)
+.......+++.+.++++.+.|+++ |++++..+.+ +.++++.+..... ..++..+ +.+
T Consensus 378 ~~~~~~~~~~l~~~~~~l~~~L~~~------~g~~~~~p~g-------g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ 444 (498)
T 3ihj_A 378 SREKESVLGNLAKKAKLTEDLFNQV------PGIHCNPLQG-------AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMK 444 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS------TTEECCCCCB-------SSEECCEECCCHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCcEecCCCe-------EEEEEEeccCchhhhHHHHhcCCCcHHHHHHH
Confidence 2222122277888899999999987 7888876542 3333334431110 0112223 466
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+|.++||.+.+|+.|.... ..+++|++++ .++++++.+++.|.+++
T Consensus 445 ll~~~gI~v~pG~~f~~~~--------------------------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~ 490 (498)
T 3ihj_A 445 LLEETGICVVPGSGFGQRE--------------------------------GTYHFRMTIL--PPVEKLKTVLQKVKDFH 490 (498)
T ss_dssp HHHHHCBCCEEGGGTCCCT--------------------------------TCCBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEeCcccCCCC--------------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHH
Confidence 7788999999987765321 1368999996 68999999999999876
Q ss_pred hh
Q psy16512 496 LQ 497 (815)
Q Consensus 496 ~~ 497 (815)
.+
T Consensus 491 ~~ 492 (498)
T 3ihj_A 491 IN 492 (498)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=204.50 Aligned_cols=336 Identities=11% Similarity=0.048 Sum_probs=218.6
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+.... .++...+ .... ..++++++++++++++++ |+||+|++
T Consensus 42 g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~-~~~~~~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~ggt 113 (429)
T 1s0a_A 42 GRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS-HVMFGGI-THAP----AIELCRKLVAMTPQPLEC--VFLADSGS 113 (429)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS-CCCCSSE-ECHH----HHHHHHHHHHHSCTTCCE--EEEESSHH
T ss_pred CCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcc-ccccccc-CCHH----HHHHHHHHHHhCCCCCCE--EEEeCCHH
Confidence 45678875443 247888888888775422 1111111 1122 567888999999987776 99999999
Q ss_pred hhHHHHHhhhcc--C----CCc-EEEecCCC-cchhhHHHHhh-------c-----cc--eEEcCc------hhhhcchh
Q psy16512 135 SAIKTVSEYFEF--N----EGS-FIYLTDNH-TSVLGMRELVK-------T-----NQ--IYSFSV------DDARNMLN 186 (815)
Q Consensus 135 ~al~~~~~al~~--~----~gd-vv~~~~~h-~s~~~~~~~~~-------~-----~g--~v~~~~------~~~~~~~~ 186 (815)
+|+.+++.++.. + +|+ ||+....| .+........+ . .+ .++++. .+..+++.
T Consensus 114 ea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 193 (429)
T 1s0a_A 114 VAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHH
Confidence 999999886531 2 576 77777654 43333322211 0 12 344431 12356666
Q ss_pred hhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC---
Q psy16512 187 EFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--- 257 (815)
Q Consensus 187 ~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--- 257 (815)
++++++ ...+++++|+++.+ +|+||.+.| +++|.++|+ ++|+++|+|++|. ++...
T Consensus 194 l~~~l~----~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 194 FARLMA----AHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD-----------REGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp HHHHHH----HHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSS
T ss_pred HHHHHH----hCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeehhhCCcccchHH
Confidence 665443 11245778888777 899998887 888888888 8999999999987 44221
Q ss_pred -CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 258 -LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 258 -~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
++.....+|++ |++|.++++ .++|++++++++++.+.+.. ... + ......+.|.+++
T Consensus 259 ~~~~~~~~~d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~--~~~---------~--------~~~~t~~~n~~~~ 317 (429)
T 1s0a_A 259 ACEHAEIAPDIL--CLGKALTGGTMTLSATLTTREVAETISNGE--AGC---------F--------MHGPTFMGNPLAC 317 (429)
T ss_dssp GGGGGTCCCSEE--EECGGGGTSSSCCEEEEECHHHHHHHHTST--TSS---------C--------SCCCTTTTCHHHH
T ss_pred HhhhcCCCCCEE--EecccccCCCccceEEEeCHHHHHHhhcCC--Ccc---------c--------ccCCCCCCCHHHH
Confidence 12223457876 567988854 56899999987765543210 000 0 0011224577888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
.++.++++.+... ...++.+++++++.+.|+++.. .|++..+.+ .+.++.+.++.. .+...+.+
T Consensus 318 ~a~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~---~~~~~~~~~--------~g~~~~~~~~~~----~~~~~l~~ 381 (429)
T 1s0a_A 318 AAANASLAILESG-DWQQQVADIEVQLREQLAPARD---AEMVADVRV--------LGAIGVVETTHP----VNMAALQK 381 (429)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHGGGGG---CTTEEEEEE--------ETTEEEEEESSC----BCHHHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHhc---CCCEEEEEE--------eeEEEEEEECCc----ccHHHHHH
Confidence 8888888877652 2238888999999999987621 134543322 267788877542 23445778
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.+++. .+++|+|+++.++++|+++++++|++++
T Consensus 382 ~l~~~Gi~v~~~----------------------------------------~~~iRis~~~~~t~e~i~~~~~~l~~~~ 421 (429)
T 1s0a_A 382 FFVEQGVWIRPF----------------------------------------GKLIYLMPPYIILPQQLQRLTAAVNRAV 421 (429)
T ss_dssp HHHHTTEECCCB----------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCEEecc----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 888899998642 1689999999999999999999999976
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 422 ~ 422 (429)
T 1s0a_A 422 Q 422 (429)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=218.45 Aligned_cols=355 Identities=13% Similarity=0.094 Sum_probs=208.1
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCC-ceeEEecCCchh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSD-HYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~-~~~iv~t~g~t~ 135 (815)
+.|........++.+++++.+.+....+..|.. . ..++|+.+++++ + .+.+ ..+|++|+|+|+
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~------g----~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~ 175 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVANNYPVPDR------C----LVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTA 175 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSS------C----CHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcc------c----HHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHH
Confidence 334444444456777777777665433333331 2 456666666665 2 2221 124999999999
Q ss_pred hHHHHHhh-----hccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc----hhhhcchhhhhhhhhhhhhcCCCccE
Q psy16512 136 AIKTVSEY-----FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV----DDARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 136 al~~~~~a-----l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~----~~~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
|+.+++.+ +. ++|| |++..++|+++.......+... .++++. +..++++.++++ +++++++
T Consensus 176 al~~~~~~l~~~~l~-~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~-------l~~~~k~ 247 (533)
T 3f6t_A 176 AIVYAFHSLAENHLL-KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKL-------KDPSIKA 247 (533)
T ss_dssp HHHHHHHHHHHTTSS-CTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHH-------SCTTEEE
T ss_pred HHHHHHHHhhhhhcc-CCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHH-------hCCCCeE
Confidence 99999998 55 8999 8899989988765544433322 555543 234566666553 3578999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccC-CCCeEEEEecccccCCC-CCCCCC--CCCcEEEEccccccccCC
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCS-RSNCFVLLDAATYCGSN-MLDLKQ--HQPDFISISFYKMFGYPT 280 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~-~~gi~vivD~a~~~g~~-~~dl~~--~~~D~vv~S~~K~~g~p~ 280 (815)
|++++++||||.++|.+++.++++ .|+ ++|+++|+|++++.... ...+.. .+.++++.|+||.|| ++
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~--------la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~ 318 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQ--------AVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFG-CT 318 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHH--------HHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHT-CG
T ss_pred EEEeCCCCCCccccCHHHHHHHHH--------HHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCC-Cc
Confidence 999999999999999996666555 344 58999999999863221 111111 134589999999999 66
Q ss_pred c--ceEEEEecc-----cccccCccc-------ccCceEEEEecC-Cccc---ccccCccccccCCCCChhHHHHHH-HH
Q psy16512 281 G--LGALIVKQK-----SAHVLNKTF-------YGGGTVKISMAN-ENFH---IKKDGLFEKFEDGTVNYLAIISLK-YG 341 (815)
Q Consensus 281 G--~G~l~~~~~-----~~~~l~~~~-------~g~~~~~~~~~~-~~~~---~~~~~~~~~~~~gt~~~~~~~al~-~a 341 (815)
| +|+++++++ +++.+.+.. ++.... .+. ..+. .............+.+.+...++. .+
T Consensus 319 G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~---~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a 395 (533)
T 3f6t_A 319 GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVL---DPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFS 395 (533)
T ss_dssp GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCS---CGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHH
T ss_pred ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhcccc---CcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHH
Confidence 8 899999887 443332100 000000 000 0000 000000111223344555554432 13
Q ss_pred HHHHH------hhh---hh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC----CCC-
Q psy16512 342 FDTME------KKR---KS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK----DGT- 406 (815)
Q Consensus 342 l~~l~------~~~---~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~----~~~- 406 (815)
+..+. ... .. .+++++.++++.+.|. + ++.+..+. .+.++.+.+... .+.
T Consensus 396 ~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~-------~~~~~~~~-------~g~~~~~~l~~~~~~~~g~~ 460 (533)
T 3f6t_A 396 MTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-A-------PKDETDTN-------THYYSLIDIYRLAEKIYGKE 460 (533)
T ss_dssp HHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-C-------CCCCSTTB-------CCSEEEEEHHHHHHHHHCHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-C-------CccccCCC-------ceEEEEEehHhhhhhccchH
Confidence 33332 010 11 1666777777777775 5 33333332 245555555421 000
Q ss_pred -------ccCH-HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 407 -------YYGY-SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 407 -------~~~~-~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
..+. ..+.+++.++||.+.+|..|..+ .+++|+|++.
T Consensus 461 ~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~----------------------------------~~~iRls~a~- 505 (533)
T 3f6t_A 461 FRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAK----------------------------------PGELRVSQAN- 505 (533)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSS----------------------------------TTEEEEESSS-
T ss_pred HHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCC----------------------------------CCEEEEEEee-
Confidence 0011 23456667899999998776531 3789999975
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.+++++++++++|.+++.+
T Consensus 506 ~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 506 LPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4789999999999988754
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=209.05 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=189.1
Q ss_pred HHHHHHHHhHcCC-----CC-CceeEEecCCchhhHHHHHhhhccCCCc-----EEEecCCCcchhhHHHHhhccc-eEE
Q psy16512 108 DQMRTKILQYFNT-----DS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-----FIYLTDNHTSVLGMRELVKTNQ-IYS 175 (815)
Q Consensus 108 ~~~r~~la~~~g~-----~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-----vv~~~~~h~s~~~~~~~~~~~g-~v~ 175 (815)
.++|+.++++++. ++ ++ |++|+|+++|+.+++.++. ++|| |++..+.|+++....+..+... .++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~--i~~t~G~~~al~~~~~~l~-~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~ 147 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRY--IVVGTGSTQLCQAAVHALS-SLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWE 147 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSE--EEEEEHHHHHHHHHHHHHH-HTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCe--EEEeCChHHHHHHHHHHhc-CCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEec
Confidence 7899999998873 23 34 9999999999999999997 7887 7888888887665554433222 444
Q ss_pred cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCC--eEEEEeccccc
Q psy16512 176 FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSN--CFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~g--i~vivD~a~~~ 253 (815)
++.++ ++ .+++++|++++++||||.+++ +| +++ .++ +++|+|++++.
T Consensus 148 ~d~~~------l~----------~~~~k~v~l~~p~NPtG~~~~--~l---~~~----------~~~~~~~ii~De~y~~ 196 (391)
T 3bwn_A 148 GDAWG------FD----------KKGPYIELVTSPNNPDGTIRE--TV---VNR----------PDDDEAKVIHDFAYYW 196 (391)
T ss_dssp EESTT------CC----------CCSCEEEEEESSCTTTCCCCC--CC---C---------------CCCEEEEECTTCS
T ss_pred CCHHH------cC----------CCCCEEEEECCCCCCCchhHH--HH---HHH----------hhcCCCEEEEeCCCCC
Confidence 43321 11 146899999999999999996 33 431 244 99999999885
Q ss_pred CC-CCCCCCCCCCcEEEEccccccccCCc--ceEEEE-ecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 254 GS-NMLDLKQHQPDFISISFYKMFGYPTG--LGALIV-KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 254 g~-~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
+. .++.. ..+.++++.|+||.|| ++| +||+++ ++++++.+.... ....++
T Consensus 197 ~~~~~l~~-~~~~~i~~~S~SK~~g-~~GlRiG~~~~~~~~l~~~l~~~~------------------------~~~~~~ 250 (391)
T 3bwn_A 197 PHYTPITR-RQDHDIMLFTFSKITG-HAGSRIGWALVKDKEVAKKMVEYI------------------------IVNSIG 250 (391)
T ss_dssp TTTSCCCC-CBCCSEEEEEHHHHHS-CGGGCEEEEEECCHHHHHHHHHHH------------------------HHHHSS
T ss_pred CCCCcccc-CCCCeEEEEechhhcC-CCccceEEEEecCHHHHHHHHHHh------------------------cccccC
Confidence 42 22322 3457899999999999 668 599998 667665553221 111235
Q ss_pred CChhHHHHHHHHHHHHH----------hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCC-C-----CCcc
Q psy16512 330 VNYLAIISLKYGFDTME----------KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYG-E-----SKYQ 392 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~----------~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~-~-----~~~~ 392 (815)
.+.+...++..+++... ..-..+ ++++++++++.+.|+++ |++++..+.+.. + ....
T Consensus 251 ~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~~~~~~~p~~~~~~f~~~~~~~~ 324 (391)
T 3bwn_A 251 VSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKES------DAFTLPKYPEAFCNYFGKSLESY 324 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC------SSEECCCCCCEEETTTTEEECCC
T ss_pred CCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcccccCCccccccccccCCCc
Confidence 56677777767776432 111122 77888889999999887 567765443200 0 0112
Q ss_pred cceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 393 GNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 393 ~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
+.++++.+++ ... +.+.|.++||.+++|..|.. ..+++|
T Consensus 325 g~~~~~~~~~--~~~-----~~~~l~~~gV~v~pg~~fg~----------------------------------~~~~iR 363 (391)
T 3bwn_A 325 PAFAWLGTKE--ETD-----LVSELRRHKVMSRAGERCGS----------------------------------DKKHVR 363 (391)
T ss_dssp CSEEEEEESS--SCC-----HHHHHHHTTEECEEGGGGTC----------------------------------CTTEEE
T ss_pred ceEEEecCCc--HHH-----HHHHHHHCCEEEccCCCCCC----------------------------------CCCEEE
Confidence 3467777753 222 77888999999999876521 137899
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||++ ++++++++++++|++++.
T Consensus 364 is~~--~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 364 VSML--SREDVFNVFLERLANMKL 385 (391)
T ss_dssp EESC--SCHHHHHHHHHHHHSCC-
T ss_pred EEec--CCHHHHHHHHHHHHHHHH
Confidence 9998 388999999999988654
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=202.87 Aligned_cols=341 Identities=13% Similarity=0.061 Sum_probs=209.2
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EE
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FI 152 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv 152 (815)
|+.+.+++.+.+....|.+ .... +.++++.+++++|.+ + +++|+|+++|+.+++.++. +|| |+
T Consensus 31 p~~~~~a~~~~~~~~~y~~------~~~~----~~~l~~~la~~~~~~--~--v~~~~ggt~al~~~l~~l~--~gd~Vl 94 (424)
T 2po3_A 31 RARLYERLDRALDSQWLSN------GGPL----VREFEERVAGLAGVR--H--AVATCNATAGLQLLAHAAG--LTGEVI 94 (424)
T ss_dssp HHHHHHHHHHHHHHTCCSS------SCHH----HHHHHHHHHHHHTSS--E--EEEESCHHHHHHHHHHHHT--CCSEEE
T ss_pred hHHHHHHHHHHHhcCCccc------CCHH----HHHHHHHHHHHhCCC--e--EEEeCCHHHHHHHHHHHcC--CCCEEE
Confidence 4567777766554322221 1233 789999999999974 3 9999999999999999984 577 99
Q ss_pred EecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhcc
Q psy16512 153 YLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNH 230 (815)
Q Consensus 153 ~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~ 230 (815)
++..+|+++.......+... .+++++ +..++++.+++++ .+++++|+++ |+||...++++|.++|+
T Consensus 95 v~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i-------~~~~~~v~~~---~~tG~~~~l~~i~~la~-- 162 (424)
T 2po3_A 95 MPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAV-------TPRTSAVVGV---HLWGRPCAADQLRKVAD-- 162 (424)
T ss_dssp EESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGC-------CTTEEEEEEE---CGGGCCCCHHHHHHHHH--
T ss_pred ECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhh-------CcCCcEEEEE---CCCCCcCCHHHHHHHHH--
Confidence 99999988876544433222 455554 3345666666543 4578998885 48999999999999999
Q ss_pred ccccccccCCCCeEEEEecccccCCCCCCCCCC--CCcEEEEccc--cccccCCcceEEEEe-cccccccCcccccCceE
Q psy16512 231 VFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH--QPDFISISFY--KMFGYPTGLGALIVK-QKSAHVLNKTFYGGGTV 305 (815)
Q Consensus 231 ~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~--~~D~vv~S~~--K~~g~p~G~G~l~~~-~~~~~~l~~~~~g~~~~ 305 (815)
++|+++|+|++++.|.. .+.... ..|+++.|+| |+++ +..+|+++.+ +++++.+.+....+...
T Consensus 163 ---------~~~~~li~Dea~~~g~~-~~~~~~~~~~di~~~S~sk~K~l~-~~~~G~~v~~~~~l~~~l~~~~~~~~~~ 231 (424)
T 2po3_A 163 ---------EHGLRLYFDAAHALGCA-VDGRPAGSLGDAEVFSFHATKAVN-AFEGGAVVTDDADLAARIRALHNFGFDL 231 (424)
T ss_dssp ---------HTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHHBTTTTC
T ss_pred ---------HcCCEEEEECccccCCe-ECCeecccccCEEEEeCCCCCCcc-CCCCeEEEeCCHHHHHHHHHHHhcCccc
Confidence 89999999999987553 221111 2589999998 7777 4347898888 56666554332211110
Q ss_pred EEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC-C
Q psy16512 306 KISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD-T 384 (815)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~-~ 384 (815)
.+. ....|........++..++..+.......++..++++++.+.|.++ |+++++.+ .
T Consensus 232 -------~~~--------~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~ 290 (424)
T 2po3_A 232 -------PGG--------SPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLADL------PGVLVADHDR 290 (424)
T ss_dssp -------TTC--------CTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC------TTEEECCGGG
T ss_pred -------ccc--------ccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccccCCCC
Confidence 000 0001111011112222233323333222377788888888888877 68888752 2
Q ss_pred CCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh-hh-hcCCC----HHHHHHHhhcCCccCC
Q psy16512 385 DYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC-QR-FLGLS----DITIKFHFQQGHICGD 458 (815)
Q Consensus 385 ~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~-~~-~~g~~----~~~~~~~~~~~~~c~~ 458 (815)
. ......++.+.++... ..++..++.+.|.++||.++. .|.++.. .. +.++. +..+ +
T Consensus 291 ~---~~~~~~~~~i~~~~~~-~~~~~~~l~~~L~~~gI~v~~--~~~~~~~~~~~~~~~g~~~~~~~~-r---------- 353 (424)
T 2po3_A 291 H---GLNNHQYVIVEIDEAT-TGIHRDLVMEVLKAEGVHTRA--YFSPGCHELEPYRGQPHAPLPHTE-R---------- 353 (424)
T ss_dssp G---SCCCCCCEEEEECHHH-HSSCHHHHHHHHHHTTEECBC--TTCSCGGGSTTTTTSCCCCCHHHH-H----------
T ss_pred C---CccccEEEEEEECCcc-chhhHHHHHHHHHHCCCceec--ccCCccccchhhhhcCCCCChhHH-H----------
Confidence 1 0011245666665200 002334688889999999987 3332110 00 00000 0000 0
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.....+|++++.+++++|+++++++|++++...
T Consensus 354 -------~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~ 386 (424)
T 2po3_A 354 -------LAARVLSLPTGTAIGDDDIRRVADLLRLCATRG 386 (424)
T ss_dssp -------HHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -------HhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 002458898889999999999999999887543
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=207.65 Aligned_cols=328 Identities=11% Similarity=0.045 Sum_probs=196.2
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC------CCceeEEe--cCCch
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD------SDHYSVIF--TSGAT 134 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~------~~~~~iv~--t~g~t 134 (815)
.|+|..+.+...+.+.+++.+.... ..++. +..... ..++|+.++++++.. +++ |++ |+|++
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~--~~~~~--Y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--i~~v~t~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAK--KMDKE--YLPIAG----LADFTRASAELALGENSEAFKSGR--YVTVQGISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT--TCCCC--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHHH
T ss_pred eEECCCCCEechHHHHHHHHHhccc--ccccC--CCCCCC----CHHHHHHHHHHhcCCCccccccCc--eEEEecCcch
Confidence 4566666666666777766554331 11222 111122 678888898888643 665 877 99999
Q ss_pred hhHHHHHhhhc--cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc--hhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 135 SAIKTVSEYFE--FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV--DDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 135 ~al~~~~~al~--~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+|+.+++.++. .++|| |+++.+.|+.+....+..+... .++++. ++.++++.+++.+. ...+++++++++
T Consensus 107 ~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~ 182 (401)
T 7aat_A 107 GSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS----KIPEKSIILLHA 182 (401)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT----TSCTTCEEEEES
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHH----hCCCCcEEEEeC
Confidence 99998877653 27888 8899988888766655544333 556543 34566665555442 234678999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CC-----CC----CCCCCcEEEEcccccccc
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-ML-----DL----KQHQPDFISISFYKMFGY 278 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~-----dl----~~~~~D~vv~S~~K~~g~ 278 (815)
++|||||..++.+++.++++ .|+++|+++++|+++..... .. .+ ...+..+++.|+||.||
T Consensus 183 ~p~NPtG~~~~~~~l~~i~~--------~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~- 253 (401)
T 7aat_A 183 CAHNPTGVDPRQEQWKELAS--------VVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG- 253 (401)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-
T ss_pred CCCCCCCCCCCHHHHHHHHH--------HHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccc-
Confidence 99999999998666554444 23389999999999653321 11 01 12345688899999999
Q ss_pred CCc--ceEEEEe---cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-------HH
Q psy16512 279 PTG--LGALIVK---QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-------ME 346 (815)
Q Consensus 279 p~G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-------l~ 346 (815)
++| +|++++. ++..+.+....... .+....+++.....++..+++. ..
T Consensus 254 ~~G~RiG~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 313 (401)
T 7aat_A 254 LYGERAGAFTVICRDAEEAKRVESQLKIL--------------------IRPMYSNPPMNGARIASLILNTPELRKEWLV 313 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHHH--------------------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred cccCceEEEEEEeCCHHHHHHHHHHHHHH--------------------HHhccCCCChHHHHHHHHHhCCHHHHHHHHH
Confidence 668 7999873 22111111000000 0001112333333333333321 11
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 347 ~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
......++++++++++.+.|.++.. .+++.+..+. ++++.+ .+. +...+..++.++||.+.+
T Consensus 314 ~~~~~~~~~~~~r~~l~~~L~~~~~---~~~~~~~~~~--------~~~~~~--~~~-----~~~~~~~ll~~~gi~v~~ 375 (401)
T 7aat_A 314 EVKGMADRIISMRTQLVSNLKKEGS---SHNWQHITDQ--------IGMFCF--TGL-----KPEQVERLTKEFSIYMTK 375 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---CSCCHHHHHC--------CSSEEE--CCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CCCCceecCC--------cceEEe--cCC-----CHHHHHHHHHhCCEeccC
Confidence 1111227888889999999987610 0123333332 333333 122 223466666888998742
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+|+|++..+++ +|++++++|++++
T Consensus 376 -------------------------------------------~~Ris~~~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 376 -------------------------------------------DGRISVAGVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp -------------------------------------------TCEEEGGGCCTT-THHHHHHHHHHHH
T ss_pred -------------------------------------------CCeEEeccCChh-hHHHHHHHHHHHh
Confidence 269999877665 4999999999865
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=200.80 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=208.1
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+.+... .+..+.+ .... .+++++++++++|. ++ +++|+|++
T Consensus 39 g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~gg~ 107 (397)
T 2ord_A 39 GNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL--IHCSNLF-WNRP----QMELAELLSKNTFG--GK--VFFANTGT 107 (397)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC--SCCCTTS-EEHH----HHHHHHHHHHTTTS--CE--EEEESSHH
T ss_pred CCEEEECCccccccccCCCCHHHHHHHHHHHHhc--ccCcccc-CCHH----HHHHHHHHHHhcCC--Ce--EEEeCCHH
Confidence 3456665433 234678888887776542 2222111 2233 78899999999984 44 99999999
Q ss_pred hhHHHHHhhhccC-----CC-c-EEEecCCC-cchhhHHHHhhcc----c-------eEEcCchhhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN-----EG-S-FIYLTDNH-TSVLGMRELVKTN----Q-------IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~~-----~g-d-vv~~~~~h-~s~~~~~~~~~~~----g-------~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
+|+.+++.++... +| + +|+....| .+...+....+.. + ...+.. .+++.+++
T Consensus 108 ~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~---~d~~~l~~------ 178 (397)
T 2ord_A 108 EANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF---NNVEDLRR------ 178 (397)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT---TCHHHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC---CCHHHHHH------
Confidence 9999999887510 43 4 77776655 4444444443322 0 122221 14444444
Q ss_pred hhcCCCccEEEEecccCCCcc-ccC---hHHHHHHhhccccccccccCCCCeEEEEecccccCCC----CCCCCCC--CC
Q psy16512 196 ENMRHSNSLFVYPAESNFSGT-KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQH--QP 265 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~-~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~~--~~ 265 (815)
.+.+++++|++++++||||. .++ +++|.++|+ ++|+++|+|++++ +.. +..+..+ .+
T Consensus 179 -~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~ 245 (397)
T 2ord_A 179 -KMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCD-----------EYDALLVFDEVQC-GMGRTGKLFAYQKYGVVP 245 (397)
T ss_dssp -HCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTT-TTTTTSSSSHHHHHTCCC
T ss_pred -HhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEeccc-CCccCccchhhhhhCCCC
Confidence 33467999999999999999 555 555666676 8999999999986 321 1111112 37
Q ss_pred cEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
|++ |++|+|+++.++|+++++++++ .+.+.. .....+.+.....++.++++.+
T Consensus 246 d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~~~------------------------~~~~~~~~~~~~~a~~~~l~~~ 298 (397)
T 2ord_A 246 DVL--TTAKGLGGGVPIGAVIVNERAN-VLEPGD------------------------HGTTFGGNPLACRAGVTVIKEL 298 (397)
T ss_dssp SEE--EECGGGGTTSCCEEEEECSTTC-CCCTTS------------------------SCCSSTTCHHHHHHHHHHHHHH
T ss_pred Cee--eeccccCCCcCeEEEEEchHhc-ccCCCC------------------------cCCCCCCCHHHHHHHHHHHHHH
Confidence 865 6789999323489999998765 443210 0111245677777777888776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.. +.+.+... ...++++++.++.. .+..++.+.|.++||.++
T Consensus 299 ~~-~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~--------~~~g~~~~~~~~~~----~~~~~l~~~l~~~gi~v~ 363 (397)
T 2ord_A 299 TK-EGFLEEVEEKGNYLMKKLQEMKE--EYDVVADV--------RGMGLMIGIQFREE----VSNREVATKCFENKLLVV 363 (397)
T ss_dssp TS-TTHHHHHHHHHHHHHHHHHHHHH--HCTTEEEE--------EEETTEEEEEECTT----SCHHHHHHHHHHTTEECE
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHHHH--hCCceEEE--------EEEeEEEEEEECCh----HHHHHHHHHHHHCCCEEc
Confidence 54 22238888999999998877510 00222212 12367888887642 123457788888999987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+|. .+++|+++++..+++|+++++++|++++.
T Consensus 364 ~~~---------------------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 364 PAG---------------------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp EET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 641 26899999888999999999999998764
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=207.12 Aligned_cols=324 Identities=12% Similarity=0.079 Sum_probs=199.8
Q ss_pred hhhhhhcccccchhhHHHHHH-HHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCch
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIE-QLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGAT 134 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~-~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t 134 (815)
.|+|..+.++.++.+.+++.+ .+... ... +..... ..++|+.++++++. +++..+|++|+|++
T Consensus 35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~-----y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASL-----YLPMEG----LNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHSCCCCCC-----CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred EEECCCCCccCcHHHHHHHHhhccCcccccc-----CCCCCc----hHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 355666666777888888877 65431 111 111122 67888889988854 45511399999999
Q ss_pred hhHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 135 SAIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 135 ~al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
+|+.+++ .++. ++|| |++....|+++....+..+... .++. +.+..++++.++++++ ...+++++++++
T Consensus 106 ~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~~~ 180 (397)
T 3fsl_A 106 GALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLK----TLQAGSIVLLHP 180 (397)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHT----TCCTTCEEEECS
T ss_pred HHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHH----hCCCCCEEEEeC
Confidence 9999995 4444 7898 8888888877655544433222 4444 2244567777776543 123568999999
Q ss_pred cccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCCCCC-----C---C-CCCCCcEEEEcccccc
Q psy16512 209 AESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-----D---L-KQHQPDFISISFYKMF 276 (815)
Q Consensus 209 ~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-----d---l-~~~~~D~vv~S~~K~~ 276 (815)
+++||||.+++.++ |.++|+ ++|+++|+|++++...... . + ...+..+++.|++|.|
T Consensus 181 ~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 249 (397)
T 3fsl_A 181 CCHNPTGADLTNDQWDAVIEILK-----------ARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHH-----------hCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc
Confidence 99999999998775 555555 8999999999976443210 0 1 1234568889999999
Q ss_pred ccCCc--ceEEEEec---ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-------
Q psy16512 277 GYPTG--LGALIVKQ---KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT------- 344 (815)
Q Consensus 277 g~p~G--~G~l~~~~---~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~------- 344 (815)
| ++| +|++++.. +.++.+...... ..+...++++..+..++..++..
T Consensus 250 ~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 308 (397)
T 3fsl_A 250 S-LYGERVGGLSVMCEDAEAAGRVLGQLKA--------------------TVRRNYSSPPNFGAQVVAAVLNDEALKASW 308 (397)
T ss_dssp T-CGGGCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHTSHHHHHHH
T ss_pred c-CcCCCeeEEEEecCCHHHHHHHHHHHHH--------------------HHHhccCCCCHHHHHHHHHHhcCHHHHHHH
Confidence 9 667 79988632 222222110000 00111223444555554444432
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
........++++++++++.+.|+++.. ..++.+..+.. +.++.+.+ +...+.+.+.++||.+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~-------~~~~~~~~--------~~~~~~~~l~~~gi~v 370 (397)
T 3fsl_A 309 LKEVEEMRTRILAMRQELVKVLSTEMP---ERNFDYLLNQR-------GMFSYTGL--------SAAQVDRLREEFGVYL 370 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCT---TSCCTHHHHCC-------SSEEECCC--------CHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCceeecCCc-------eEEEecCC--------CHHHHHHHHHhCCEEE
Confidence 111111227888889999999988610 00344443321 33333222 2234777888999998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
++| + |+|++.. ++++|++++++|+++
T Consensus 371 ~~g-----------------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 371 IAS-----------------------------------------G--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp CTT-----------------------------------------C--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred CCC-----------------------------------------C--eEEEEec-CHhhHHHHHHHHHhh
Confidence 753 3 9999755 457799999999875
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=201.58 Aligned_cols=307 Identities=11% Similarity=0.011 Sum_probs=196.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHH-hhccc--eEEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-REL-VKTNQ--IYSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~-~~~~g--~v~~~~~~~ 181 (815)
.+++++++++++|.+. +++++++++|+.+ +.++. ++|| ||+....|.+.+.. ... +...| ...++.+
T Consensus 69 ~~~l~~~la~l~g~~~----~~~~~sG~~Ai~~-~~~l~-~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~-- 140 (400)
T 3nmy_A 69 RFAYERCVAALEGGTR----AFAFASGMAATST-VMELL-DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLT-- 140 (400)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTT--
T ss_pred HHHHHHHHHHHhCCCC----EEEecCHHHHHHH-HHHHc-CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCC--
Confidence 7889999999999752 5666666999998 45666 8998 88888888865543 333 44445 4444433
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK 261 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~ 261 (815)
+++.+++ .+.+++++|++++++||+|.+.|+++|+++|+ ++|+++|+|++++.+.....+
T Consensus 141 -d~~~l~~-------~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~-----------~~g~~livDe~~~~~~~~~~~- 200 (400)
T 3nmy_A 141 -DPAAFKA-------AIRADTKMVWIETPTNPMLKLVDIAAIAVIAR-----------KHGLLTVVDNTFASPMLQRPL- 200 (400)
T ss_dssp -SHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHCCGG-
T ss_pred -CHHHHHH-------HhccCCCEEEEECCCCCCCeeecHHHHHHHHH-----------HcCCEEEEECCCcccccCChh-
Confidence 4444544 33468999999999999999999999999999 899999999998865422112
Q ss_pred CCCCcEEEEccccccccCC-cceE--EEEe-cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPT-GLGA--LIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~-G~G~--l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.+++|+++.|++|++++|. .+|. ++++ +++.+.++... +....+.+....+.
T Consensus 201 ~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~------------------------~~~g~~~~~~~a~~ 256 (400)
T 3nmy_A 201 SLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQ------------------------NSIGGVQGPFDSFL 256 (400)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHH------------------------HHHCCBCCHHHHHH
T ss_pred hcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHH------------------------HhcCCCCCHHHHHH
Confidence 3479999999999999663 2444 4443 34444332211 11122334344333
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCCC---------CcccceEEEEEecCCCCc
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGES---------KYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~~---------~~~~~i~~f~~~~~~~~~ 407 (815)
+..+++.+ ...+++..+.+..+.+.|++. |.+. +..|.-.+.+ ...+++++|.+++.. +
T Consensus 257 ~l~~l~~l---~~r~~~~~~~a~~l~~~L~~~------p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~-~- 325 (400)
T 3nmy_A 257 ALRGLKTL---PLRMRAHCENALALAQWLETH------PAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF-D- 325 (400)
T ss_dssp HHHHHTTH---HHHHHHHHHHHHHHHHHHTTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH-H-
T ss_pred HHHhHhHH---HHHHHHHHHHHHHHHHHHHcC------CCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH-H-
Confidence 33444333 223467778888888888876 5554 3333210000 235789999996421 1
Q ss_pred cCHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
....+.+.+...++.++.|..++ ++....+..++++...+. |..++.+|+|+|.++.++.+
T Consensus 326 -~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~---------------gi~~~liRlsvGle~~~dli 389 (400)
T 3nmy_A 326 -AAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQL---------------GISDALVRLSVGIEDLGDLR 389 (400)
T ss_dssp -HHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHH---------------TCCTTEEEEECCSSCHHHHH
T ss_pred -HHHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhc---------------CCCcCeEEEEeCcCCHHHHH
Confidence 11236667777777777775543 333334455555544333 45568999999988776666
Q ss_pred HHHHHHHH
Q psy16512 485 KYFLSFLN 492 (815)
Q Consensus 485 ~~lv~~L~ 492 (815)
+.|.++|+
T Consensus 390 ~dl~~al~ 397 (400)
T 3nmy_A 390 GDLERALV 397 (400)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 66666654
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-21 Score=211.18 Aligned_cols=317 Identities=11% Similarity=0.075 Sum_probs=198.0
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC--CCCceeEEe--cCCchhhHHHHHhhh
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT--DSDHYSVIF--TSGATSAIKTVSEYF 144 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~--~~~~~~iv~--t~g~t~al~~~~~al 144 (815)
...+++.+.+++.+.+... ..+ .+..... ..++|+.+++++ +. ++++ |++ |+|+++|+.+++.++
T Consensus 42 ~~~~~~~v~~a~~~~~~~~---~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~--v~~~~~~g~~~a~~~~~~~~ 111 (394)
T 2ay1_A 42 HTPIMRAVHAAEQRMLETE---TTK-TYAGLSG----EPEFQKAMGELILGDGLKSET--TATLATVGGTGALRQALELA 111 (394)
T ss_dssp CCCCCHHHHHHHHHHHHHC---CCC-CCCCSSC----CHHHHHHHHHHHHGGGCCGGG--EEEEEEEHHHHHHHHHHHHH
T ss_pred CccCcHHHHHHHHHhcCCc---ccC-CCCCCCC----cHHHHHHHHHHHhCCCCCccc--EEEEecCCchhHHHHHHHHH
Confidence 3455677777776654321 001 0111222 678999999987 55 5666 998 999999999999877
Q ss_pred c-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 145 E-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 145 ~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
. +.+|| |++....|+++.......+... .++.+ .+..++++.++++++ ...++++++++++++||||.++|
T Consensus 112 ~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~~~~~~~~nptG~~~~ 187 (394)
T 2ay1_A 112 RMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA----AAKKGDMVLLHGCCHNPTGANLT 187 (394)
T ss_dssp HHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH----TCCTTCEEEEESSSCTTTCCCCC
T ss_pred HhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHH----hCCCCCEEEEeCCCCCCCCCCCC
Confidence 5 24888 8888888877655544443332 55554 234566777766443 11234788888999999999998
Q ss_pred hHHH---HHHhhccccccccccCCCCeEEEEecccccCCC-------CCC-CCCCCC-cEEEEccccccccCCc--ceEE
Q psy16512 220 LSWC---NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-------MLD-LKQHQP-DFISISFYKMFGYPTG--LGAL 285 (815)
Q Consensus 220 l~~I---~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-------~~d-l~~~~~-D~vv~S~~K~~g~p~G--~G~l 285 (815)
.+++ .++|+ ++|+++|+|++++.... ++. +...+. .+++.|+||+|| ++| +|++
T Consensus 188 ~~~l~~i~~~~~-----------~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~riG~~ 255 (394)
T 2ay1_A 188 LDQWAEIASILE-----------KTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERTGCL 255 (394)
T ss_dssp HHHHHHHHHHHH-----------HHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCEEEE
T ss_pred HHHHHHHHHHHH-----------HCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCc-CcCCccceE
Confidence 7755 55555 89999999999875332 111 211233 467889999999 667 5999
Q ss_pred EE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH------HhhhhhH-HHH
Q psy16512 286 IV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM------EKKRKSF-TNA 355 (815)
Q Consensus 286 ~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l------~~~~~~~-~~~ 355 (815)
++ +++.++.+...+.. ..+...++++..+..++.++++.. ......+ +++
T Consensus 256 ~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~ 315 (394)
T 2ay1_A 256 LALCADAATRELAQGAMAF--------------------LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGM 315 (394)
T ss_dssp EEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHH--------------------HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 98 45443322111100 001122334566666666666533 1111222 778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhh
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSC 435 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~ 435 (815)
+++++++.+.|+++... .++++..+.. +.++.+.++ ...+.+.+.++||.+++|
T Consensus 316 ~~~~~~l~~~L~~~~~~---~~~~~~~~~~-------g~~~~~~~~--------~~~~~~~l~~~gi~v~~~-------- 369 (394)
T 2ay1_A 316 LRLREQLAGELRDLSGS---DRFGFVAEHR-------GMFSRLGAT--------PEQVKRIKEEFGIYMVGD-------- 369 (394)
T ss_dssp HHHHHHHHHHHHHHHTS---STTTHHHHCC-------SSEEECCCC--------HHHHHHHHHHHCEECCTT--------
T ss_pred HHHHHHHHHHHHhcCCC---CCeeEEcCCc-------eEEEeeCCC--------HHHHHHHHHhCCEEecCC--------
Confidence 88888999988876100 0234333321 444443322 134777888999998631
Q ss_pred hhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 436 QRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 436 ~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+|+|++ .++++++++++++|+++
T Consensus 370 -----------------------------------~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 370 -----------------------------------SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp -----------------------------------CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred -----------------------------------CeEEee-cCCHhhHHHHHHHHHHc
Confidence 699998 57899999999999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-19 Score=197.58 Aligned_cols=326 Identities=12% Similarity=0.071 Sum_probs=210.4
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHHHHHh---hhccC
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIKTVSE---YFEFN 147 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~~~~---al~~~ 147 (815)
..++.+.+++.+.+... .+....+..... ..++++.|+++++.+. + +|++|+|+++|+.+++. ++. +
T Consensus 57 ~~~~~v~~a~~~~~~~~--~~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--~v~~~~g~~~a~~~~~~~a~~~~-~ 127 (426)
T 1sff_A 57 HLHPKVVAAVEAQLKKL--SHTCFQVLAYEP----YLELCEIMNQKVPGDFAK--KTLLVTTGSEAVENAVKIARAAT-K 127 (426)
T ss_dssp BTCHHHHHHHHHHTTTC--SCCCTTTEECHH----HHHHHHHHHHHSSCSSCE--EEEEESSHHHHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHhC--CCccccccCCHH----HHHHHHHHHHhCCccccc--EEEEeCchHHHHHHHHHHHHHhh-C
Confidence 35678888887766432 121111222333 7889999999993232 4 49999999999999988 665 6
Q ss_pred CCcEEEecCCCcc-hhhHHHHhhcc------------c--eEEcCch-----hhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 148 EGSFIYLTDNHTS-VLGMRELVKTN------------Q--IYSFSVD-----DARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 148 ~gdvv~~~~~h~s-~~~~~~~~~~~------------g--~v~~~~~-----~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
+|++++....|+. ...+....+.. + .++++.+ ..++++.++++++. ....+++++|++
T Consensus 128 ~~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~~~~~v~~ 205 (426)
T 1sff_A 128 RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN--DAAPEDIAAIVI 205 (426)
T ss_dssp CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH--TCCGGGEEEEEE
T ss_pred CCeEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh--ccCCCceEEEEE
Confidence 7777777776654 44444443321 1 2444321 12466666654430 000135778887
Q ss_pred e-cccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CCCCCCCCcEEEEccccccc
Q psy16512 208 P-AESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LDLKQHQPDFISISFYKMFG 277 (815)
Q Consensus 208 ~-~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~dl~~~~~D~vv~S~~K~~g 277 (815)
+ .++| ||...+ +++|.++|+ ++|+++|+|++++ ++.. . ++.....+|++ |++|+|+
T Consensus 206 ~p~~~n-tG~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~ 271 (426)
T 1sff_A 206 EPVQGE-GGFYASSPAFMQRLRALCD-----------EHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIA 271 (426)
T ss_dssp CSBCTT-TTSCBCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGG
T ss_pred ecccCC-CCcccCCHHHHHHHHHHHH-----------HcCCEEEEechhhccCcccchhhhhhcCCCCCEE--EEccccc
Confidence 5 4456 997777 888888888 8999999999987 2211 1 12222346765 7889999
Q ss_pred cCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 278 YPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 278 ~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
+ | +|++++++++++.+.+.. .....+.+..+..++.++++.+... ...+++
T Consensus 272 -~-GlriG~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a~~aal~~~~~~-~~~~~~ 324 (426)
T 1sff_A 272 -G-GFPLAGVTGRAEVMDAVAPGG------------------------LGGTYAGNPIACVAALEVLKVFEQE-NLLQKA 324 (426)
T ss_dssp -T-SSCCEEEEEEHHHHTTSCTTS------------------------BCCSSSSCHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred -C-CCceEEEEEcHHHHhhhccCC------------------------cCcCCCCCHHHHHHHHHHHHHHHhc-CHHHHH
Confidence 6 7 699999988776553211 0112245777888888888887652 223888
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC----CCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD----GTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~----~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
.++++++.+.|+++.. ..+.+.... ..++++++.+.... ....+..++.+.|.++||.+++|...
T Consensus 325 ~~~~~~l~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~- 393 (426)
T 1sff_A 325 NDLGQKLKDGLLAIAE--KHPEIGDVR--------GLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY- 393 (426)
T ss_dssp HHHHHHHHHHHHHHHH--TCTTEEEEE--------EETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT-
T ss_pred HHHHHHHHHHHHHHHH--hCCCeEEEE--------EEEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC-
Confidence 8999999998877510 003333221 13788888885310 01122345777788889999876420
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|+++++.++++++++++++|++++.
T Consensus 394 ------------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 422 (426)
T 1sff_A 394 ------------------------------------YNVLRILVPLTIEDAQIRQGLEIISQCFD 422 (426)
T ss_dssp ------------------------------------SCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 27899999989999999999999998764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-20 Score=204.62 Aligned_cols=337 Identities=12% Similarity=0.083 Sum_probs=203.7
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhh-hhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLS-DFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~-~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+... ..+++++.+... .......+.+++.+++++|++.. .++++|+++|+..++.++. +
T Consensus 41 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~v~~~~Gs~a~~~al~~~~-~ 116 (425)
T 3ecd_A 41 ENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFNAGHA---NVQPHSGAQANGAVMLALA-K 116 (425)
T ss_dssp CCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHC-C
T ss_pred cCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhCCCCc---eeecCchHHHHHHHHHHcc-C
Confidence 4455788888887665322 123333221111 11011133456889999998753 3568889999999999996 8
Q ss_pred CCc-EEEecCCCcchh-hHHHH-hhccc--eEE--cCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL-GMREL-VKTNQ--IYS--FSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~-~~~~~-~~~~g--~v~--~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++...+|++.. ..... ....+ .++ ++++ ..++++.++++++ .+++++|++++++| |...+
T Consensus 117 ~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~v~~~~~~~--~~~~~ 188 (425)
T 3ecd_A 117 PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQ------QHKPSLIIAGFSAY--PRKLD 188 (425)
T ss_dssp TTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHH------HHCCSEEEEECSCC--CSCCC
T ss_pred CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHh------hcCCcEEEEccccC--CCcCC
Confidence 999 888888888732 22221 11111 223 3322 3567777766543 13689999998877 57889
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC--CCC-CCCcEEEEccccccccCCcceEEEEec-cccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD--LKQ-HQPDFISISFYKMFGYPTGLGALIVKQ-KSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d--l~~-~~~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++|+.|..... ... ..+|+++.|+||+|++|. .|+++.++ .+.+.+
T Consensus 189 l~~i~~l~~-----------~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~ 256 (425)
T 3ecd_A 189 FARFRAIAD-----------SVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKI 256 (425)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCS-CEEEEESCHHHHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCC-cEEEEeCCHHHHHHH
Confidence 999999999 89999999999765532110 111 127899999999997675 59998885 344433
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+....+ ..++++...+.++..++......+ ..+ ++..++++++.+.|.+.
T Consensus 257 ~~~~~~~-----------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---- 309 (425)
T 3ecd_A 257 NSAVFPG-----------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG---- 309 (425)
T ss_dssp HHHHC----------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HhhhCcc-----------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----
Confidence 2221111 123555566666655554432211 223 88889999999999886
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
+++++.+.. .++++.+.+.... .+...+.+.|.++||.++.+.... ....
T Consensus 310 ---g~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~v~~~~~p~--~~~~---------------- 359 (425)
T 3ecd_A 310 ---GVDLVTGGT------DNHLLLVDLRPKG---LKGAQVEQALERAGITCNKNGIPF--DPEK---------------- 359 (425)
T ss_dssp ---TCEEGGGSC------SSSEEEEECGGGT---CCHHHHHHHHHHTTEECEECCCTT--CSSC----------------
T ss_pred ---CCeeccCCC------CceEEEEEeCCCC---CCHHHHHHHHHHcCCEecccccCC--CCCC----------------
Confidence 677775421 2567777765321 233468888899999998653211 0000
Q ss_pred CccCCcccccCCCCceEEEEeccCCCC----HHHHHHHHHHHHHHHhhc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHASN----WDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~~t----~edi~~lv~~L~~~~~~~ 498 (815)
....+.+|++++..++ ++++++++++|++++.+.
T Consensus 360 -----------~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 360 -----------PTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp -----------TTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 0113679999665554 999999999999988664
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-22 Score=220.30 Aligned_cols=292 Identities=12% Similarity=0.134 Sum_probs=187.6
Q ss_pred HHHHHHHHhH----cC--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch
Q psy16512 108 DQMRTKILQY----FN--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD 179 (815)
Q Consensus 108 ~~~r~~la~~----~g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~ 179 (815)
.++++.++++ +| +++++ |++|+|+++|+.+++.++. ++|| |++....|+++.......+... .++.+.+
T Consensus 69 ~~l~~~la~~l~~~~g~~~~~~~--v~~~~g~~~a~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~ 145 (392)
T 3b1d_A 69 DELLQAVLDWEKSEHQYSFDKED--IVFVEGVVPAISIAIQAFT-KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEE 145 (392)
Confidence 3455555554 45 45555 9999999999999999997 8898 8888888877655444332222 4444322
Q ss_pred h---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 180 D---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 180 ~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+ ..+++.++++++ .+++++|++++++||||.++|. ++|.++|+ ++|+++|+|++++.
T Consensus 146 ~g~~~~d~~~l~~~l~------~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~~~~ 208 (392)
T 3b1d_A 146 NGLFQIDFEQLENDIV------ENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQ-----------KHHVILVSDEIHQD 208 (392)
Confidence 2 256666665432 1468899999999999999984 45555555 89999999999875
Q ss_pred CC----CCCCCCC-----CCCcEEEEccccccccCCc--ceEEEEecc-cccccCcccccCceEEEEecCCcccccccCc
Q psy16512 254 GS----NMLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGL 321 (815)
Q Consensus 254 g~----~~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (815)
.. ...++.. .+.++++.|++|+|| .+| +|+++++++ +++.+.....
T Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G~r~G~~~~~~~~~~~~~~~~~~--------------------- 266 (392)
T 3b1d_A 209 LTLFGHEHVSFNTVSPDFKDFALVLSSATKTFN-IAGTKNSYAIIENPTLCAQFKHQQL--------------------- 266 (392)
Confidence 32 1122211 345688899999998 446 799998754 6555432211
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHh-ccccCCCCcEEEcCCCCCCCCCcccceEEEE
Q psy16512 322 FEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQ-LSYSNGQPLVELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 322 ~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~-l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.+..++++.++..++.++++......... ++..++++++.+.|++ + |+++++.+.. +.++++.
T Consensus 267 --~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~-------~~~~~i~ 331 (392)
T 3b1d_A 267 --VNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEA------PRLKVMKPQG-------TYLIWLD 331 (392)
Confidence 11112445555555556665322221222 6677788888888876 5 5676665432 3333456
Q ss_pred EecC--CCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 400 LLHK--DGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 400 ~~~~--~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
++.. +.. ++.+.| .++||.+++|..+.+. ..+++|++++
T Consensus 332 ~~~~~~~~~-----~l~~~l~~~~gi~v~~g~~f~~~---------------------------------~~~~iRi~~~ 373 (392)
T 3b1d_A 332 FSDYGLTDD-----ALFTLLHDQAKVILNRGSDYGSE---------------------------------GELHARLNIA 373 (392)
Confidence 6531 222 366666 4889999987654310 1378999988
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy16512 477 HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~~~~ 496 (815)
. +++++++++++|.+++.
T Consensus 374 ~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 374 A--PKSLVEEICKRIVCCLP 391 (392)
Confidence 5 57899999999988653
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=203.22 Aligned_cols=328 Identities=12% Similarity=0.048 Sum_probs=201.4
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~ 135 (815)
.|+|..+.++.++.+.+++.+.+... ... +..... ..++|+.++++++. +++..+|++|+|+++
T Consensus 58 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~-----Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 58 VYTNEDGKIPLLRAVRDAEKARVEAGLPRG-----YLPIDG----IAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTCCCCC-----CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred eeECCCCCccCcHHHHHHHHHHhccCCCCC-----CCCCCC----cHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 45566566667788888887766541 111 111222 67888888888753 344113999999999
Q ss_pred hHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 136 AIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 136 al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
|+.+++ .++. ++|| |++..+.|+++....+.++... .++. +.+..++++.++++++ ...++++++++++
T Consensus 129 al~~~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~i~~ 203 (420)
T 4f4e_A 129 ALKIGADFLRTL-NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALN----GYEPGTIVVLHAC 203 (420)
T ss_dssp HHHHHHHHHHHH-CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHT----TCCTTCEEEEECS
T ss_pred HHHHHHHHHHHh-CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHH----hCCCCCEEEEeCC
Confidence 999994 4555 8898 9999988877765555443333 5565 2245567777776543 1235789999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-----C---C-CCCCCcEEEEccccccccCC
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-----D---L-KQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-----d---l-~~~~~D~vv~S~~K~~g~p~ 280 (815)
++||||..++.+++.++++ .|+++|+++|+|+++....... . + ...+.++++.|++|.|| ++
T Consensus 204 p~NPtG~~~~~~~l~~i~~--------~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~ 274 (420)
T 4f4e_A 204 CHNPTGVDLNDAQWAQVVE--------VVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS-LY 274 (420)
T ss_dssp SCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT-CG
T ss_pred CCCCCCCCCCHHHHHHHHH--------HHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc-Cc
Confidence 9999999999776554443 2338999999999975432110 0 0 12345688899999999 66
Q ss_pred c--ceEEEEe---cccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH------Hhhh
Q psy16512 281 G--LGALIVK---QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM------EKKR 349 (815)
Q Consensus 281 G--~G~l~~~---~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l------~~~~ 349 (815)
| +|++++. ++.++.+...... ..+....+++.....++..++... ....
T Consensus 275 G~RiG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 334 (420)
T 4f4e_A 275 GERVGALSIITDSKDEAARVLSQLKR--------------------VIRTNYSNPPTHGGAIVAAVLASPELRASWVQEL 334 (420)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHHH--------------------HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8 8998752 2322221100000 001112234444444444444321 1111
Q ss_pred hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc
Q psy16512 350 KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 350 ~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
..+ ++++++++++.+.|+++.. .+++.+..+.. +.++++.+ +...+.+.+.++||.+.++
T Consensus 335 ~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~-------g~~~~~~~--------~~~~~~~~l~~~gI~v~~~- 395 (420)
T 4f4e_A 335 GEMRDRIRAMRNGLVERLKAAGI---ERDFSFINAQR-------GMFSYSGL--------TSAQVDRLREEFGIYAVST- 395 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC---SSCCTHHHHSC-------SSEEECCC--------CHHHHHHHHHHHCEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCCceeECCCc-------cEEEEeCC--------CHHHHHHHHHhCCEEecCC-
Confidence 222 7888889999999987610 01344433321 33333222 2235778888999998642
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+ |+|++.. +++++++++++|++++
T Consensus 396 ----------------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 396 ----------------------------------------G--RICVAAL-NTRNLDVVANAIAAVL 419 (420)
T ss_dssp ----------------------------------------S--EEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ----------------------------------------C--eEEEecC-CHHHHHHHHHHHHHHh
Confidence 2 9999754 5577999999999875
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-20 Score=203.85 Aligned_cols=327 Identities=12% Similarity=0.070 Sum_probs=210.1
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+..... .+. ...... ..++++++++++|.+ + +++|+|++
T Consensus 38 g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~--~~~~~~----~~~l~~~la~~~~~~--~--v~~~~gg~ 106 (406)
T 4adb_A 38 GKEYIDFAGGIAVNALGHAHPELREALNEQASKFWH-TGN--GYTNEP----VLRLAKKLIDATFAD--R--VFFCNSGA 106 (406)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSC-CCT--TSCCHH----HHHHHHHHHHHSSCS--E--EEEESSHH
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccc-ccC--CcCCHH----HHHHHHHHHhhCCCC--e--EEEeCcHH
Confidence 34566665542 2367888888777654211 111 112233 788999999999865 3 99999999
Q ss_pred hhHHHHHhhhccC------CC-c-EEEecCCCcchh-hHHHHhhccc----eEEcCchhh----hcchhhhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN------EG-S-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDA----RNMLNEFKESQENVEN 197 (815)
Q Consensus 135 ~al~~~~~al~~~------~g-d-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~----~~~~~~~~~l~~~~~~ 197 (815)
+|+.+++.++... +| + +|+....|+... .......... ..+...+.. .+++.+++ .
T Consensus 107 ~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~-------~ 179 (406)
T 4adb_A 107 EANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASA-------L 179 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHT-------T
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHH-------H
Confidence 9999999988521 45 5 777777665543 3333222111 111111110 24444444 3
Q ss_pred cCCCccEEEEecccCCCcccc--C---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCCCcE
Q psy16512 198 MRHSNSLFVYPAESNFSGTKY--P---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQPDF 267 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~tG~~~--~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~~D~ 267 (815)
+.+++++|+++ ++||+|.++ + +++|.++|+ ++|+++|+|++++ ++.. +. +.....+|+
T Consensus 180 l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~-----------~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 247 (406)
T 4adb_A 180 IDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCN-----------RHNALLIFDEVQTGVGRTGELYAYMHYGVTPDL 247 (406)
T ss_dssp CSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSE
T ss_pred hcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCccchhHHHHhcCCCCCE
Confidence 34679999999 899999776 4 666777777 8999999999986 2211 11 111234677
Q ss_pred EEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 268 ISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 268 vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
+ |+||+++ + | +|++++++++++.+.+... ....+.+.....++.++++.+
T Consensus 248 ~--t~sK~~~-~-G~r~G~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~a~~~~l~~~ 299 (406)
T 4adb_A 248 L--TTAKALG-G-GFPVGALLATEECARVMTVGTH------------------------GTTYGGNPLASAVAGKVLELI 299 (406)
T ss_dssp E--EECGGGG-T-TSCCEEEEECHHHHHTCCTTSS------------------------CCSSTTCHHHHHHHHHHHHHH
T ss_pred E--Eechhhc-C-CCCeEEEEEcHHHHhhhccCCc------------------------CCCCCCCHHHHHHHHHHHHHH
Confidence 6 5699999 5 5 8999999888766643321 112255667777777777765
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
.. ....++.+++++++.+.|+++.... +.+.-. ...+.++.+.++.... .+..++.+.|.++||.++
T Consensus 300 ~~-~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~ 366 (406)
T 4adb_A 300 NT-PEMLNGVKQRHDWFVERLNTINHRY--GLFSEV--------RGLGLLIGCVLNADYA--GQAKQISQEAAKAGVMVL 366 (406)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEE--------EEETTEEEEEECTTTT--TCHHHHHHHHHHTTEECE
T ss_pred Hh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EEEEEEEEEEEeCCcH--HHHHHHHHHHHHCCcEEe
Confidence 43 2223888888999998887751000 111111 1236788888875321 123468888888899987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++. .+++|++++...+++|+++++++|++++.+
T Consensus 367 ~~~---------------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 399 (406)
T 4adb_A 367 IAG---------------------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEH 399 (406)
T ss_dssp ESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecC---------------------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 642 278999999999999999999999998753
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-20 Score=207.45 Aligned_cols=325 Identities=11% Similarity=0.037 Sum_probs=198.3
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC------CCCCceeEEe--cCCchh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN------TDSDHYSVIF--TSGATS 135 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g------~~~~~~~iv~--t~g~t~ 135 (815)
|++..+..++++.+.+++.+.+... ..+ .+..... ..++|+.++++++ +++++ |++ |+|+++
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~---~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~--v~~~~~~g~~~ 105 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE---TTK-NYLGIDG----IPEFGRCTQELLFGKGSALINDKR--ARTAQTPGGTG 105 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC---CCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEESHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc---ccc-CCCCCCC----CHHHHHHHHHHHhcCCCCcccccc--EEEEecccchh
Confidence 3344334456677888776654421 001 0111223 6789999999882 23555 888 999999
Q ss_pred hHHHHHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 136 AIKTVSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 136 al~~~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
|+.+++.++. +.+|| |++..+.|+++.......+... .++.+ .+..++++.++++++ ...+++++++++++
T Consensus 106 a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v~~~~p 181 (396)
T 2q7w_A 106 ALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLN----EAQAGDVVLFHGCC 181 (396)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT----TCCTTCEEEEECSS
T ss_pred hHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHH----hCCCCCEEEEeCCC
Confidence 9999987764 26888 8888888877655444432222 45553 234556777666443 11234789999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCC---C-CCCcEEEEccccccccCCc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLK---Q-HQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~---~-~~~D~vv~S~~K~~g~p~G 281 (815)
+||||.++|.+++.++++ .|+++|+++|+|+++...... .++. . .+.++++.|+||.|| ++|
T Consensus 182 ~nptG~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~~G 252 (396)
T 2q7w_A 182 HNPTGIDPTLEQWQTLAQ--------LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFG-LYN 252 (396)
T ss_dssp CTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGG
T ss_pred CCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccc-ccc
Confidence 999999998776444433 223899999999997643210 1111 1 134578899999999 668
Q ss_pred --ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------Hhhh
Q psy16512 282 --LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKR 349 (815)
Q Consensus 282 --~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~ 349 (815)
+|++++ +++.++.+...+.. ..+...++++..+..++.++++.. ....
T Consensus 253 ~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 312 (396)
T 2q7w_A 253 ERVGACTLVAADSETVDRAFSQMKA--------------------AIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312 (396)
T ss_dssp GCCEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred cccceEEEEcCCHHHHHHHHHHHHH--------------------HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHH
Confidence 699997 44322222111000 001222345666666666666432 1111
Q ss_pred hhHHHHHHHHHHHHHHHHhccccCCCC-cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc
Q psy16512 350 KSFTNAFELSQYTYFYFKQLSYSNGQP-LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 350 ~~~~~~~~l~~~l~~~L~~l~~~~~~p-~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
...++++++++++.+.|+++.. + ++++..+.. +.++.+.+. ...+.+.+.++||.+++
T Consensus 313 ~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~-------~~~~~~~~~--------~~~~~~~l~~~gv~v~~-- 371 (396)
T 2q7w_A 313 DMRQRIQRMRQLFVNTLQEKGA----NRDFSFIIKQN-------GMFSFSGLT--------KEQVLRLREEFGVYAVA-- 371 (396)
T ss_dssp HC-CHHHHHHHHHHHHHHHTTC----CSCCTHHHHCC-------SSEEECCCC--------HHHHHHHHHHHCEECCT--
T ss_pred HHHHHHHHHHHHHHHHHHhcCC----CCCcceecCCC-------ceEEEecCC--------HHHHHHHHHhcCeeecC--
Confidence 1227788889999999988610 0 244443321 333333221 13477778889999863
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+|+|++.. +++++++++++|+++
T Consensus 372 -----------------------------------------~~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 372 -----------------------------------------SGRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp -----------------------------------------TCEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred -----------------------------------------CceEEEeec-CHHHHHHHHHHHHhc
Confidence 169999854 889999999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=197.00 Aligned_cols=285 Identities=15% Similarity=0.088 Sum_probs=186.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEE-ecCCCcchhhHHHHhhccc--eEEcCc-hh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIY-LTDNHTSVLGMRELVKTNQ--IYSFSV-DD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~-~~~~h~s~~~~~~~~~~~g--~v~~~~-~~ 180 (815)
..++++++++++|.+. .++++|+++|+.+++.++. .+|| +|+ +...|++.+.....+...| .++++. ++
T Consensus 49 ~~~l~~~la~~~~~~~----~i~~~~G~~a~~~al~~~~-~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 123 (357)
T 3lws_A 49 IEPFEQKFADVLGMDD----AVFFPSGTMAQQVALRIWS-DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGAADR 123 (357)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSCTTS
T ss_pred HHHHHHHHHHHhCCCc----EEEecCcHHHHHHHHHHHh-hcCCCcEEEecccceeeeeccchhhhccCcEEEEecCCCC
Confidence 7899999999999843 3555778889999998887 6666 444 4556666554222222234 555543 23
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccC---hHHHHHHhhccccccccccCCCCeEEEEeccccc---
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC--- 253 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~--- 253 (815)
.++++++++ . .++++|++++++||| |.++| +++|.++|+ ++|+++|+|+++..
T Consensus 124 ~~d~~~l~~-------~--~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~-----------~~~~~li~D~a~~~~~~ 183 (357)
T 3lws_A 124 LMTLDEIKA-------L--PDIACLLLELPQREIGGVAPAFSELETISRYCR-----------ERGIRLHLDGARLFEML 183 (357)
T ss_dssp CCCHHHHHT-------C--CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHH-----------HTTCEEEEEETTHHHHH
T ss_pred CcCHHHHhc-------C--cCcceEEEEcccccCCceeCCHHHHHHHHHHHH-----------HcCCEEEEECchhhhhh
Confidence 456666554 1 238999999999998 99998 555666666 89999999998751
Q ss_pred ---CCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC-
Q psy16512 254 ---GSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT- 329 (815)
Q Consensus 254 ---g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt- 329 (815)
+....++. ...|+++.|+||+|++|.| |+++.++++++.+..... ...++
T Consensus 184 ~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~------------------------~~~~~~ 237 (357)
T 3lws_A 184 PYYEKTAAEIA-GLFDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKR------------------------RYGGDL 237 (357)
T ss_dssp HHHTCCHHHHH-TTSSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHH------------------------HTTCCC
T ss_pred hhcCCChHHHH-hcCCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHH------------------------HhcCCc
Confidence 21111111 2468899999999966888 999988877765532110 00111
Q ss_pred --CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCC
Q psy16512 330 --VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGT 406 (815)
Q Consensus 330 --~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~ 406 (815)
.+.....++ .+++. ....+++..+.++++.+.|+++ |++++. .+. .++++++.++....
T Consensus 238 ~~~~~~~~~~~-~~l~~---~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~- 299 (357)
T 3lws_A 238 ISLYPYIVSAD-YYYEL---RKDRMGQYYEQAKQLAEQFNAL------PGVHTTPEVP-------VSNMFHLHFDGQAA- 299 (357)
T ss_dssp SCCHHHHHHHH-HHHHH---HTTCHHHHHHHHHHHHHHHHTS------TTEEEESSSC-------SSSEEEEEEESCHH-
T ss_pred ccchHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHhC------CCCeeccCCC-------cceEEEEEecCChH-
Confidence 122222222 33332 2223355677888999999988 789884 333 26788888875310
Q ss_pred ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC---CCHHH
Q psy16512 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA---SNWDD 483 (815)
Q Consensus 407 ~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~---~t~ed 483 (815)
.+..++.+.|.++||.+++|..+.+ ..+++|++++.. .+.++
T Consensus 300 -~~~~~~~~~l~~~Gi~v~~g~~~~~----------------------------------~~~~~r~~i~~~~~~~~~~~ 344 (357)
T 3lws_A 300 -DISPKLEQVQEETGLGFVGYLVDKD----------------------------------GYCSTEISVGDAYGELDQQT 344 (357)
T ss_dssp -HHHHHHHHHHHHHCEESCSCCEECS----------------------------------SEEEEEEEBCTTGGGSCHHH
T ss_pred -HHHHHHHHHHHhcCeEEecccccCC----------------------------------CceEEEEEecchhhhcCHHH
Confidence 1123577888999999998743221 126899999854 47888
Q ss_pred HHHHHHHHHHHH
Q psy16512 484 VKYFLSFLNQYF 495 (815)
Q Consensus 484 i~~lv~~L~~~~ 495 (815)
++..++.|.+.+
T Consensus 345 l~~al~~l~~al 356 (357)
T 3lws_A 345 RDAGFARLRQAF 356 (357)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 888888887653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=202.89 Aligned_cols=323 Identities=15% Similarity=0.062 Sum_probs=202.8
Q ss_pred hhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC-----CCCceeEEe--cCCchhhH
Q psy16512 66 DYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT-----DSDHYSVIF--TSGATSAI 137 (815)
Q Consensus 66 d~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~-----~~~~~~iv~--t~g~t~al 137 (815)
+..+...+++.+.+++.+.+... ...+ .+..... ..++|+.+++++ +. ++++ |++ |+|+++|+
T Consensus 42 ~~~~~~~~~~~v~~a~~~~~~~~--~~~~-~y~~~~g----~~~lr~~la~~~~~~~~~~~~~~~--v~~~~t~gg~~a~ 112 (412)
T 1ajs_A 42 TDDCQPWVLPVVRKVEQRIANNS--SLNH-EYLPILG----LAEFRTCASRLALGDDSPALQEKR--VGGVQSLGGTGAL 112 (412)
T ss_dssp CTTSCCCCCHHHHHHHHHHHTCT--TCCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHHHHHH
T ss_pred CCCCCccccHHHHHHHHHhhhCh--hhcc-CCCCCCC----CHHHHHHHHHHHhcCCCCccCCCc--EEEEECCCcHHHH
Confidence 33333455677777776654211 0101 0111222 678999999998 53 5566 999 99999999
Q ss_pred HHHHh--hhccCCC-----c-EEEecCCCcchhhHHHHhhcc-c-eEEcC--chhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 138 KTVSE--YFEFNEG-----S-FIYLTDNHTSVLGMRELVKTN-Q-IYSFS--VDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 138 ~~~~~--al~~~~g-----d-vv~~~~~h~s~~~~~~~~~~~-g-~v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
.+++. ++. .+| | |++....|+++.......+.. . .++.+ .+..++++.++++++ ...++++++
T Consensus 113 ~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~v 187 (412)
T 1ajs_A 113 RIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLE----NAPEFSIFV 187 (412)
T ss_dssp HHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHH----HSCTTCEEE
T ss_pred HHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHH----hCCCCcEEE
Confidence 99964 333 688 8 999998988877666665555 4 45553 233556777666443 112467899
Q ss_pred EEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccC-CC-----CCCCC----CCCCcEEEEcc
Q psy16512 206 VYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SN-----MLDLK----QHQPDFISISF 272 (815)
Q Consensus 206 ~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~-----~~dl~----~~~~D~vv~S~ 272 (815)
++++++||||.++|.++ |.++|+ ++|+++|+|+++... .. ...+. ..+.++++.|+
T Consensus 188 ~~~~p~nptG~~~~~~~l~~l~~~~~-----------~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 256 (412)
T 1ajs_A 188 LHACAHNPTGTDPTPEQWKQIASVMK-----------RRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSF 256 (412)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEEC
T ss_pred EECCCCCCCCCCCCHHHHHHHHHHHH-----------HCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEec
Confidence 99999999999998775 555555 899999999996432 21 11111 11234888999
Q ss_pred ccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-
Q psy16512 273 YKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME- 346 (815)
Q Consensus 273 ~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~- 346 (815)
||.|| ++| +|++++ +++.++.+...+.. ..+...++++..+..++.++++...
T Consensus 257 sK~~~-~~G~riG~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~a~~~~l~~~~~ 315 (412)
T 1ajs_A 257 SKNFG-LYNERVGNLTVVAKEPDSILRVLSQMQK--------------------IVRVTWSNPPAQGARIVARTLSDPEL 315 (412)
T ss_dssp TTTSC-CGGGCEEEEEEECSSHHHHHHHHHHHHH--------------------HHHTTTSSCCSHHHHHHHHHHHSHHH
T ss_pred ccccC-CCCcceEEEEEecCCHHHHHHHHHHHHH--------------------HHhcccCCCChHHHHHHHHHHcCcch
Confidence 99999 778 799999 66533222110000 0112223456677777777776432
Q ss_pred -----hhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 347 -----KKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 347 -----~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
..... .++++++++++.+.|+++..+ .+++++.+.. +.++...+ + ...+.+.+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~-------~~~~~~~~---~-----~~~~~~~l~~~ 377 (412)
T 1ajs_A 316 FHEWTGNVKTMADRILSMRSELRARLEALKTP---GTWNHITDQI-------GMFSFTGL---N-----PKQVEYLINQK 377 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHCC-------SSEEECCC---C-----HHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCeeEEcCCC-------ceEEEeCC---C-----HHHHHHHHHhC
Confidence 11122 278888999999999886100 0244443321 33332222 1 23466777889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
||.+++ .+|+|++. .+++++++++++|++++.
T Consensus 378 gv~v~~-------------------------------------------~~Ris~~~-~~~~~i~~~~~~l~~~l~ 409 (412)
T 1ajs_A 378 HIYLLP-------------------------------------------SGRINMCG-LTTKNLDYVATSIHEAVT 409 (412)
T ss_dssp CEECCT-------------------------------------------TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred CEEecC-------------------------------------------CcEEEeee-CCHHHHHHHHHHHHHHHH
Confidence 999863 15999984 488999999999998774
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=208.83 Aligned_cols=347 Identities=13% Similarity=0.107 Sum_probs=204.5
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+..|+|..+.... +.+.+++.+.+..... .+..... ..+++++++++++.+ + ++||+|+|+|+.++
T Consensus 42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~-----~y~~~~~----~~~l~~~la~~~~~~--~--v~~t~ggt~A~~~a 107 (467)
T 1ax4_A 42 SAVYIDLLTDSGT-NAMSDHQWAAMITGDE-----AYAGSRN----YYDLKDKAKELFNYD--Y--IIPAHQGRGAENIL 107 (467)
T ss_dssp GGCSEECSCSSSC-CCEEHHHHHHHHTCCC-----CSSSCHH----HHHHHHHHHHHHCCC--E--EEEESSHHHHHHHH
T ss_pred CceeeecccCcCC-HHHHHHHHHHHhhccc-----ccccCcc----HHHHHHHHHHHcCCC--c--EEEcCCcHHHHHHH
Confidence 4578888655544 6666666655432110 1111123 678999999999873 3 99999999999999
Q ss_pred HhhhccC----CCc----EEEecCCC-cchhhHHHHhhccceEEcCc------------hhhhcchhhhhhhhhhhhhcC
Q psy16512 141 SEYFEFN----EGS----FIYLTDNH-TSVLGMRELVKTNQIYSFSV------------DDARNMLNEFKESQENVENMR 199 (815)
Q Consensus 141 ~~al~~~----~gd----vv~~~~~h-~s~~~~~~~~~~~g~v~~~~------------~~~~~~~~~~~~l~~~~~~~~ 199 (815)
+.++. . +|| +|++ ..| +++.......+.. .+.+.. ++.++++.++++++. ...
T Consensus 108 l~~~~-~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~---~~~ 181 (467)
T 1ax4_A 108 FPVLL-KYKQKEGKAKNPVFIS-NFHFDTTAAHVELNGCK-AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ---HGA 181 (467)
T ss_dssp HHHHH-HHHHHTTCCSSCEEEE-SSCCHHHHHHHHHTTCE-EEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH---HCG
T ss_pred HHHHH-HhhccCCCccceEEEe-ccccchhhHHHhccCCc-eecccccccccccccCCcccccCHHHHHHHHHh---cCC
Confidence 99987 6 887 5665 555 3333333332211 222211 223566776665531 101
Q ss_pred CCccEEEEecccCCC-ccccChH---HHHHHhhccccccccccCCCCeEEEEeccccc-----------CCCCCCCCC--
Q psy16512 200 HSNSLFVYPAESNFS-GTKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-----------GSNMLDLKQ-- 262 (815)
Q Consensus 200 ~~t~lv~i~~~~n~t-G~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-----------g~~~~dl~~-- 262 (815)
+++++|++++++||+ |.++|.+ +|.++|+ +||+++|+|+++.. +....++..
T Consensus 182 ~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~-----------~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (467)
T 1ax4_A 182 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK-----------QHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVI 250 (467)
T ss_dssp GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHH
T ss_pred CCeeEEEEeccccCCCccCCChhHHHHHHHHHH-----------HcCCEEEEEchhhhhcchhccccccccCCCchhhhh
Confidence 368999999999999 8888765 5666666 89999999998665 333332211
Q ss_pred ----CCCcEEEEccccccccCCcceEEEEe-c-ccccccCccccc-CceEEEEecCCcccccccCccccccCCCCChhHH
Q psy16512 263 ----HQPDFISISFYKMFGYPTGLGALIVK-Q-KSAHVLNKTFYG-GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAI 335 (815)
Q Consensus 263 ----~~~D~vv~S~~K~~g~p~G~G~l~~~-~-~~~~~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~ 335 (815)
..+|++++|+||++|.|.| |+++.+ + ++++.+...... ++ ....++.+...+
T Consensus 251 ~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~ 309 (467)
T 1ax4_A 251 FDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPMEG--------------------FVTYGGLAGRDM 309 (467)
T ss_dssp HHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHHTC--------------------STTTTTCCHHHH
T ss_pred hhhccccceEEEeccccCCCCcc-eEEEeCCHHHHHHHHHhhcccccc--------------------ccccCCccchHH
Confidence 1368899999999995534 666666 5 565544321100 00 012234454445
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec----CCCCccCHH
Q psy16512 336 ISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH----KDGTYYGYS 411 (815)
Q Consensus 336 ~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~----~~~~~~~~~ 411 (815)
.++..+++.... ...+++..++++++.+.|.+. ++.+..+.. +.++++.+.. .....++..
T Consensus 310 ~a~~~~l~~~~~-~~~~~~~~~~~~~l~~~L~~~-------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 374 (467)
T 1ax4_A 310 AAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREA-------GIPIQYPTG-------GHAVFVDCKKLVPQIPGDQFPAQ 374 (467)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC-------SSEEEEESTTTCTTSCGGGCHHH
T ss_pred HHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhC-------CCCcccCCC-------ceEEEEehhhhccccccCCCCHH
Confidence 544445543211 012244456778888888763 455544432 5666666211 111112234
Q ss_pred HHHHhh-hcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHHHHHH
Q psy16512 412 EVQNLA-NLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDVKYFL 488 (815)
Q Consensus 412 ~v~~~l-~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv 488 (815)
++.+.| .++||.+++ |.++... ... .|. . .....+++|+|++.+ +|++|+++++
T Consensus 375 ~l~~~L~~~~gv~v~~~g~~~~~~-~~~-~g~-----------------~----~~~~~~~iRls~~~~~~t~e~i~~~~ 431 (467)
T 1ax4_A 375 AVINALYLESGVRAVEIGSFLLGR-DPA-TGE-----------------Q----KHADMEFMRLTIARRVYTNDHMDYIA 431 (467)
T ss_dssp HHHHHHHHHHCEECEEESHHHHCB-CTT-TCS-----------------B----CCCSCCEEEEECCTTSSCHHHHHHHH
T ss_pred HHHHHHHHhcCceeeecCcccccc-ccc-ccc-----------------c----cccccceEEEecccccCCHHHHHHHH
Confidence 577777 899999987 5431000 000 000 0 001137999999954 8999999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|++++..
T Consensus 432 ~~l~~~~~~ 440 (467)
T 1ax4_A 432 DALIGLKEK 440 (467)
T ss_dssp HHHHTTHHH
T ss_pred HHHHHHHHh
Confidence 999987755
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=200.68 Aligned_cols=311 Identities=10% Similarity=0.022 Sum_probs=190.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCC-cchhhHHHHhhccc-eEEcCch-----
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNH-TSVLGMRELVKTNQ-IYSFSVD----- 179 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h-~s~~~~~~~~~~~g-~v~~~~~----- 179 (815)
..+++++++++++.+ + +++|+|+++|+.+++.++. ++|| +++...| +++.......+... .++++.+
T Consensus 77 ~~~l~~~la~~~~~~--~--~~~~~~gt~a~~~al~~l~-~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~ 150 (456)
T 2ez2_A 77 FYHLERTVQELFGFK--H--IVPTHQGRGAENLLSQLAI-KPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGL 150 (456)
T ss_dssp HHHHHHHHHHHHCCS--E--EEEESSHHHHHHHHHHHHC-CTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTC
T ss_pred HHHHHHHHHHHhCCC--c--EEEeCCcHHHHHHHHHHhC-CCCC-EeccccccchhHHHHHHcCCEEEEecccccccccc
Confidence 778999999999975 3 9999999999999999996 8999 8888888 66554444332222 3344421
Q ss_pred -----hhhcchhhhhhhhhhhhhcCCCccEEEEecccC-CCccccC---hHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 180 -----DARNMLNEFKESQENVENMRHSNSLFVYPAESN-FSGTKYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 180 -----~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n-~tG~~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
..++++.++++++ +...+++++|++++++| |||.++| +++|.++|+ ++|+++|+|++
T Consensus 151 ~~~~~~~~d~~~l~~~i~---~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~-----------~~~i~li~De~ 216 (456)
T 2ez2_A 151 NIAFKGDIDLKKLQKLID---EKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTE-----------AHGIKVFYDAT 216 (456)
T ss_dssp CCSCTTCBCHHHHHHHHH---HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HTTCCEEEECT
T ss_pred cccccCCCCHHHHHHHHH---hccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHH-----------HcCCeEEEEcc
Confidence 2456677666553 11012248999999998 9999998 777788887 89999999999
Q ss_pred cccC---------CCCCCCC--------CCCCcEEEEccccccccCCcceEEEE-ecccccccCccccc-CceEEEEecC
Q psy16512 251 TYCG---------SNMLDLK--------QHQPDFISISFYKMFGYPTGLGALIV-KQKSAHVLNKTFYG-GGTVKISMAN 311 (815)
Q Consensus 251 ~~~g---------~~~~dl~--------~~~~D~vv~S~~K~~g~p~G~G~l~~-~~~~~~~l~~~~~g-~~~~~~~~~~ 311 (815)
++.| ....... ...+|++++|+||+++ ++..|+++. ++++++.+...... .+.
T Consensus 217 ~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~------- 288 (456)
T 2ez2_A 217 RCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VNIGGFLCMNDDEMFSSAKELVVVYEGM------- 288 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CSSCEEEEESCHHHHHHHHHHHHHHTCC-------
T ss_pred ccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CCceeEEEECCHHHHHHHHHHHhhccCc-------
Confidence 8864 2111111 1236898889999877 423688888 45665544322100 000
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
...+..+...+.++ ++..+..+. ...++..++.+++.+.|++. ++.+..+..
T Consensus 289 -------------~~~~~~~~~~~~a~--a~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~~~p~~----- 341 (456)
T 2ez2_A 289 -------------PSYGGLAGRDMEAM--AIGLREAMQYEYIEHRVKQVRYLGDKLKAA-------GVPIVEPVG----- 341 (456)
T ss_dssp -------------TTTTTCCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC-----
T ss_pred -------------ccccCcchhHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-------CCccccCCC-----
Confidence 00112233333331 222233332 22266777888888888875 455554432
Q ss_pred cccceEEEEEe----cCCCCccCHHHHHHhh-hcCCcEecc-CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccC
Q psy16512 391 YQGNIVNFNLL----HKDGTYYGYSEVQNLA-NLKKIQLRT-GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIID 464 (815)
Q Consensus 391 ~~~~i~~f~~~----~~~~~~~~~~~v~~~l-~~~gI~v~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~ 464 (815)
+.++.+.+. +.+...+....+.+.| .++||.+.. |.+|.+. ....|. . .
T Consensus 342 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~~g~-----------------~----~ 396 (456)
T 2ez2_A 342 --GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNVTGE-----------------H----H 396 (456)
T ss_dssp --SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTTTCS-----------------B----C
T ss_pred --ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Cccccc-----------------c----c
Confidence 567777653 2222221111224555 788998643 5433110 000010 0 0
Q ss_pred CCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhh
Q psy16512 465 GKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 465 ~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~ 497 (815)
....+++|+|++.. ++++|+++++++|++++.+
T Consensus 397 ~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 397 RPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 01136899999987 8999999999999998755
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-19 Score=195.98 Aligned_cols=324 Identities=13% Similarity=0.113 Sum_probs=209.6
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+... ...... .+++++++++++| .++ ++||+|++
T Consensus 35 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~----~~~l~~~la~~~~--~~~--v~~~~gg~ 103 (395)
T 3nx3_A 35 AKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN---LYYNEN----IAAAAKNLAKASA--LER--VFFTNSGT 103 (395)
T ss_dssp CCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT---TSBCHH----HHHHHHHHHHHHT--CSE--EEEESSHH
T ss_pred CCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc---ccCCHH----HHHHHHHHHHhcC--CCe--EEEeCCHH
Confidence 34577765542 2368888888877654322111 112233 7889999999998 344 99999999
Q ss_pred hhHHHHHhhhcc------CCCc-EEEecCCCcchhhHHHHhhcc----------c--eEEcCchhhhcchhhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF------NEGS-FIYLTDNHTSVLGMRELVKTN----------Q--IYSFSVDDARNMLNEFKESQENV 195 (815)
Q Consensus 135 ~al~~~~~al~~------~~gd-vv~~~~~h~s~~~~~~~~~~~----------g--~v~~~~~~~~~~~~~~~~l~~~~ 195 (815)
+|+..++.++.. .+++ +|+....|+........+... + ...+.. .+++.+++
T Consensus 104 ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~l~~------ 174 (395)
T 3nx3_A 104 ESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY---NDISSVEK------ 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT---TCHHHHHT------
T ss_pred HHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC---CCHHHHHH------
Confidence 999999887641 1345 777776655433211111110 0 111111 13444444
Q ss_pred hhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCCCCCCc
Q psy16512 196 ENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLKQHQPD 266 (815)
Q Consensus 196 ~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~~~~~D 266 (815)
.+++++++|++..++|++|.+.+ +++|.++|+ ++|+++|+|+++. +|... . +.....+|
T Consensus 175 -~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d 242 (395)
T 3nx3_A 175 -LVNEKTCAIILESVQGEGGINPANKDFYKALRKLCD-----------EKDILLIADEIQCGMGRSGKFFAYEHAQILPD 242 (395)
T ss_dssp -TCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred -hccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCCcCCcchhHHhcCCCCC
Confidence 33467899999999999999988 888899998 8999999999976 33211 1 11123467
Q ss_pred EEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH
Q psy16512 267 FISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l 345 (815)
++ |++|.++++.++|++++++++ .+.+.+...+. ..+.|.++..++.++++.+
T Consensus 243 ~~--t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~aa~aal~~~ 296 (395)
T 3nx3_A 243 IM--TSAKALGCGLSVGAFVINQKVASNSLEAGDHGS------------------------TYGGNPLVCAGVNAVFEIF 296 (395)
T ss_dssp EE--EECGGGTTTSCCEEEEECHHHHHHHSCTTCCSS------------------------CBSCCHHHHHHHHHHHHHH
T ss_pred EE--EecccccCCCceEEEEEchhhhhhhcCCcccCC------------------------CCCCCHHHHHHHHHHHHHH
Confidence 65 567988843358999999888 66664432111 1245667777777788766
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
... ...++.+++.+++.+.|.++.. ..|.+.... ..++++.+.+.+.. ....+.+.|.++||.++
T Consensus 297 ~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~----~~~~~~~~l~~~Gi~v~ 361 (395)
T 3nx3_A 297 KEE-KILENVNKLTPYLEQSLDELIN--EFDFCKKRK--------GLGFMQGLSLDKSV----KVAKVIQKCQENALLLI 361 (395)
T ss_dssp HHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEECTTS----CHHHHHHHHHHTTEECE
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEE--------eEEEEEEEEeCCcc----hHHHHHHHHHHCCCEEe
Confidence 432 2236677777777777665410 003343332 23688888886531 23457888889999987
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++. .+++|+++++..|++|+++++++|++++.
T Consensus 362 ~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 393 (395)
T 3nx3_A 362 SCG---------------------------------------ENDLRFLPPLILQKEHIDEMSEKLRKALK 393 (395)
T ss_dssp EET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 641 27899999999999999999999999774
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=205.10 Aligned_cols=324 Identities=14% Similarity=0.066 Sum_probs=201.3
Q ss_pred hhhhhhcccccchhhHHHHHH-HHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEe--cCCc
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIE-QLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIF--TSGA 133 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~-~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~--t~g~ 133 (815)
.|+|..+...+++.+.+++.+ .+... ..+ .+..... ..++|+.++++++. ++++ |++ |+|+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~~---~~~-~y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~t~g~ 107 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDSS---YNH-EYLGITG----LPSLTSNAAKIIFGTQSDALQEDR--VISVQSLSG 107 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCTT---CCC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCcc---ccc-CCCCCCC----cHHHHHHHHHHHhcCCCCCCCcce--EEEEeccch
Confidence 456666666777888888776 54311 001 0111223 67899999998832 4565 999 9999
Q ss_pred hhhHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc-Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 134 TSAIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF-SV-DDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 134 t~al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~-~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
++|+.+++ .... .+|| |++..+.|+++....+..+... .++. ++ +..++++.++++++ ...+.+.++++
T Consensus 108 ~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----~~~~~~~~~~~ 182 (412)
T 1yaa_A 108 TGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQ----KAPEGSIFVLH 182 (412)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHH----HSCTTCEEEEE
T ss_pred HhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHH----hCCCCCEEEEe
Confidence 99999884 3333 6888 9999888887655444332222 4555 32 34567777766543 11123566666
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC--------CC-CCCCCC----CcEEEEcccc
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--------ML-DLKQHQ----PDFISISFYK 274 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--------~~-dl~~~~----~D~vv~S~~K 274 (815)
++++||||.++|.+++.++++ .|+++|+++|+|+++..... ++ ++...+ .++++.|+||
T Consensus 183 ~~p~nPtG~~~~~~~l~~l~~--------~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 254 (412)
T 1yaa_A 183 SCAHNPTGLDPTSEQWVQIVD--------AIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAK 254 (412)
T ss_dssp CSSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CCCCCCCCCCCCHHHHHHHHH--------HHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCC
Confidence 999999999998776544433 22289999999999753211 11 221122 4578899999
Q ss_pred ccccCCc--ceEEE--E-----ecc----cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 275 MFGYPTG--LGALI--V-----KQK----SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 275 ~~g~p~G--~G~l~--~-----~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
.|| |+| +|+++ . +++ +++.+... .+....+++..+..++.++
T Consensus 255 ~~~-~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~------------------------~~~~~~~~~~~~~~a~~~~ 309 (412)
T 1yaa_A 255 NAG-MYGERVGCFHLALTKQAQNKTIKPAVTSQLAKI------------------------IRSEVSNPPAYGAKIVAKL 309 (412)
T ss_dssp TSC-CGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHH------------------------HHTTTSSCCHHHHHHHHHH
T ss_pred CCC-CcCCcceEEEEEecCCCCCHHHHHHHHHHHHHH------------------------HhhccCCCChHHHHHHHHH
Confidence 999 778 69998 6 444 33333111 0122235566777777677
Q ss_pred HHHHH------hhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH
Q psy16512 342 FDTME------KKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ 414 (815)
Q Consensus 342 l~~l~------~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~ 414 (815)
++... ..... .++++++++++.+.|+++... .+++++.+. ++++.+. +. +...+.
T Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~--------~~~~~~~--~~-----~~~~~~ 371 (412)
T 1yaa_A 310 LETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP---GNWDHIVNQ--------CGMFSFT--GL-----TPQMVK 371 (412)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS---SCCTHHHHC--------CSSEEEC--CC-----CHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CCeeeeccC--------ceEEEee--CC-----CHHHHH
Confidence 76432 11122 278888899999999886100 024444333 3333331 21 123466
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+++.++||.+++ ++|||++. .+++++++++++|+++
T Consensus 372 ~~l~~~gi~v~~-------------------------------------------~~Ris~~~-~~~~~i~~~~~~l~~~ 407 (412)
T 1yaa_A 372 RLEETHAVYLVA-------------------------------------------SGRASIAG-LNQGNVEYVAKAIDEV 407 (412)
T ss_dssp HHHHHHCEECCT-------------------------------------------TSEEEGGG-CCTTTHHHHHHHHHHH
T ss_pred HHHHhCCEEecc-------------------------------------------CcEEEEcc-CCHhHHHHHHHHHHHH
Confidence 677788998853 37999985 4889999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 408 ~~ 409 (412)
T 1yaa_A 408 VR 409 (412)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-19 Score=195.46 Aligned_cols=346 Identities=14% Similarity=0.093 Sum_probs=204.1
Q ss_pred chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHH-HhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKI-LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~l-a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v 151 (815)
++.+.+++.+.+....+.+. ... ..++++.+ ++++|. .++ +++++|+|+|+.+++.++..++|| |
T Consensus 15 ~~~i~~a~~~~~~~~~~~~~------~~~----~~~l~~~~~a~~~g~-~~~--~v~~~sgt~al~~al~~l~~~~Gd~V 81 (377)
T 3ju7_A 15 VIEYLDELKEIDASHIYTNY------GPI----NQRFEQTIMSGFFQN-RGA--VTTVANATLGLMAAIQLKKRKKGKYA 81 (377)
T ss_dssp GGGGHHHHHHHHHHTCCSSS------CHH----HHHHHHHHHHHTSTT-CSE--EEEESCHHHHHHHHHHHHSCTTCCEE
T ss_pred cHHHHHHHHHHHHcCCcccC------CHH----HHHHHHHHHHHHhCC-CCe--EEEeCCHHHHHHHHHHHcCCCCcCEE
Confidence 45666777666654333210 122 78899999 999993 233 899999999999999998448999 9
Q ss_pred EEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCC--ccEEEEecccCCCccccChHHHHHHh
Q psy16512 152 IYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHS--NSLFVYPAESNFSGTKYPLSWCNTVH 227 (815)
Q Consensus 152 v~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~--t~lv~i~~~~n~tG~~~~l~~I~~l~ 227 (815)
|++..+|+++.......+... .+++++ +..++++.+++++. +++ |++|+ ++|++|...|+++|.++|
T Consensus 82 i~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~------~~~~~tk~v~---~~~~~G~~~~~~~i~~la 152 (377)
T 3ju7_A 82 LMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIE------ELKEEVAIVV---PYATFGSWMNLEEYEELE 152 (377)
T ss_dssp EEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHH------HHGGGEEEEC---CBCGGGBCCCCHHHHHHH
T ss_pred EECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHh------cCCCCceEEE---EECCCCCccCHHHHHHHH
Confidence 999999998876655443332 555553 34567777776541 234 88887 567899999999999998
Q ss_pred hccccccccccCCCCeEEEEecccccCCCCCCCCCC---CCcEEEEcc--ccccccCCcceEEEEec-ccccccCccccc
Q psy16512 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH---QPDFISISF--YKMFGYPTGLGALIVKQ-KSAHVLNKTFYG 301 (815)
Q Consensus 228 ~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~---~~D~vv~S~--~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g 301 (815)
+ +|++||+|++|+.|... +.... ..|+.++|| ||+++ +...|+++.++ ++.++++.....
T Consensus 153 ~------------~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~-~g~gG~~~~~~~~l~~~~~~~~~~ 218 (377)
T 3ju7_A 153 K------------KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFG-IGEGGLIYSKNEEDIQRIKRMGNF 218 (377)
T ss_dssp H------------TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSC-CBSCEEEEESCHHHHHHHHHHTBT
T ss_pred h------------cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCC-CCCcEEEEECCHHHHHHHHHHHhc
Confidence 7 68999999999988642 22122 257777775 69999 42356666654 344444333222
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE-
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL- 380 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l- 380 (815)
+... . +......+..+..++.+.+ ++..+..+....++.+++++++.+.|+++ +++.+
T Consensus 219 g~~~-------~----~~~~~~g~~~~~~~~~aa~----~~~~l~~l~~~~~~~~~~~~~~~~~L~~~------~~~~~~ 277 (377)
T 3ju7_A 219 GFDT-------N----RECTMMGFNCKMSEYAAAI----GIATMKKWDDKLKERTRISEWYKQLLQSN------GLMKKG 277 (377)
T ss_dssp TBCT-------T----SCBCSSCCBCCCCHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHHHHT------TTTTTT
T ss_pred CCCC-------C----CceeeccccCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcccc
Confidence 2110 0 0000011222222222222 22333333333478888899999999887 33211
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCc--cCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGC--HCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~--~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
+.+... ......++.+.+++. .+..++.+.|.++||.++.+. .|............
T Consensus 278 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~---------------- 335 (377)
T 3ju7_A 278 WQLQKT--EAVIQQFMPILCPEE----VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKST---------------- 335 (377)
T ss_dssp CBCCCC--SCBCCSSEEEECCTT----SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBS----------------
T ss_pred ccCCCC--CcceEEEEEEEeCCh----hhHHHHHHHHHHCCCceecccCCccccchhhhcCCCC----------------
Confidence 111110 011122344544431 124568999999999998875 22211111000000
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
...+.+....+.||++++...|++|+++++++|++++.+.
T Consensus 336 ~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~~ 375 (377)
T 3ju7_A 336 DLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVSA 375 (377)
T ss_dssp CCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-----
T ss_pred CCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 0000111224789999999999999999999999877653
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-20 Score=209.36 Aligned_cols=346 Identities=12% Similarity=0.064 Sum_probs=203.6
Q ss_pred hhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHH
Q psy16512 61 DICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTV 140 (815)
Q Consensus 61 ~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~ 140 (815)
+.+|+|..+.... +.+.+++.+.+.... ..+..... ..+++++++++++.+ + ++||+|+|+|+.++
T Consensus 40 ~~~ylD~~~~~~~-~~v~~a~~~~l~~~~-----~~y~~~~~----~~~l~~~la~~~~~~--~--v~~t~~gt~A~~~a 105 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-GAVTQSMQAAMMRGD-----EAYSGSRS----YYALAESVKNIFGYQ--Y--TIPTHQGRGAEQIY 105 (467)
T ss_dssp GGCSEECSCCSSC-SCCCHHHHHHTTSCC-----CCSSSCHH----HHHHHHHHHHHHCCS--E--EEEEC--CCSHHHH
T ss_pred CCeeEecccCCCc-HHHHHHHHHHhccCc-----ceeccCch----hHHHHHHHHHHhCcC--c--EEEcCCcHHHHHHH
Confidence 4578888765555 777887776653211 01111223 678999999999873 3 99999999999999
Q ss_pred HhhhccCC-----C----c-EEEecCCCcch-hhHHHHhhccceE--------EcC----chhhhcchhhhhhhhhhhhh
Q psy16512 141 SEYFEFNE-----G----S-FIYLTDNHTSV-LGMRELVKTNQIY--------SFS----VDDARNMLNEFKESQENVEN 197 (815)
Q Consensus 141 ~~al~~~~-----g----d-vv~~~~~h~s~-~~~~~~~~~~g~v--------~~~----~~~~~~~~~~~~~l~~~~~~ 197 (815)
+.++. ++ | | |+.. ..|... .......... .+ +.+ .++.++++.++++++. .
T Consensus 106 l~~~~-~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~---~ 179 (467)
T 2oqx_A 106 IPVLI-KKREQEKGLDRSKMVAFS-NYFFDTTQGHSQINGCT-VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEE---V 179 (467)
T ss_dssp HHHHH-HHHHHHHCCCTTTCEEEE-SSCCHHHHHHHHHTTCE-EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHH---H
T ss_pred HHHHh-ccccccCCCCccceEEec-ccccccchhhhhccCcc-eeeccccccccCCCCCCccCCcCHHHHHHHHHh---c
Confidence 99987 66 7 8 6665 556332 2222221111 11 111 1234567777765531 0
Q ss_pred cCCCccEEEEecccCCC-ccccCh---HHHHHHhhccccccccccCCCCeEEEEeccccc-----------CCCCCCCCC
Q psy16512 198 MRHSNSLFVYPAESNFS-GTKYPL---SWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-----------GSNMLDLKQ 262 (815)
Q Consensus 198 ~~~~t~lv~i~~~~n~t-G~~~~l---~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-----------g~~~~dl~~ 262 (815)
..+++++|++++++|++ |.++|. ++|.++|+ +||+++|+|++++. +....+...
T Consensus 180 ~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~-----------~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~ 248 (467)
T 2oqx_A 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK-----------KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQ 248 (467)
T ss_dssp CGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH-----------HTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHH
T ss_pred CCCceeEEEEeccccCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEchhhhhhhhhcccccccccCccHHH
Confidence 01368999999999998 888775 46677777 89999999988765 222222211
Q ss_pred ------CCCcEEEEccccccccCCcceEEEEecc-ccc---ccCccc-ccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 263 ------HQPDFISISFYKMFGYPTGLGALIVKQK-SAH---VLNKTF-YGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 263 ------~~~D~vv~S~~K~~g~p~G~G~l~~~~~-~~~---~l~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
..+|++++|+||++|.|.| |+++.+++ +++ .+++.. .+++. ...++.+
T Consensus 249 ~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 307 (467)
T 2oqx_A 249 ITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF--------------------PTYGGLE 307 (467)
T ss_dssp HHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS--------------------CCCCCCC
T ss_pred HhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc--------------------ccccchh
Confidence 2378889999999995545 67777766 433 222211 11111 1123344
Q ss_pred hhHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec----CCCC
Q psy16512 332 YLAIISLKYGFDTMEKKR-KSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH----KDGT 406 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~-~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~----~~~~ 406 (815)
...+.++..+++. ... ..+++..++++++.+.|.++ ++.+. +.. +.++++.+.. .+..
T Consensus 308 ~~~~~al~~~l~~--~~~~~~~~~~~~~~~~l~~~L~~~-------~~~~~-~~~-------~~~~~~~~~~~~~~~~~~ 370 (467)
T 2oqx_A 308 GGAMERLAVGLYD--GMNLDWLAYRIAQVQYLVDGLEEI-------GVVCQ-QAG-------GHAAFVDAGKLLPHIPAD 370 (467)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHT-------TCCEE-EEC-------SSCEEEEHHHHSTTSCGG
T ss_pred hhHHHHHHHhhHh--hhhHHHHHHHHHHHHHHHHHHHHC-------CCeee-cCC-------ceEEEEechhhcccCCcc
Confidence 4444444333221 111 12355677888899999876 34444 432 5677777642 2222
Q ss_pred ccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHH
Q psy16512 407 YYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDV 484 (815)
Q Consensus 407 ~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi 484 (815)
.++...+.+.| .++||.+.++..|..+.... .|. + .....+++|++++.. ++++|+
T Consensus 371 ~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~-~g~-------------------~--~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 371 QFPAQALACELYKVAGIRAVEIGSFLLGRDPK-TGK-------------------Q--LPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp GCHHHHHHHHHHHHHCEECEEESHHHHCBCTT-TCS-------------------B--CCCSCCEEEECCCTTTSCHHHH
T ss_pred cccHHHHHHHHHHhcCceeccccccccccccc-ccc-------------------c--ccCccCeEEEEecCCCCCHHHH
Confidence 21122346667 89999998743221100000 000 0 001137899999998 999999
Q ss_pred HHHHHHHHHHHhh
Q psy16512 485 KYFLSFLNQYFLQ 497 (815)
Q Consensus 485 ~~lv~~L~~~~~~ 497 (815)
++++++|++++.+
T Consensus 429 ~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 429 DFIIEAFKHVKEN 441 (467)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998754
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=200.75 Aligned_cols=343 Identities=10% Similarity=0.036 Sum_probs=213.7
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCChhhhhhhhhhhHHHHH-HHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGNSVLSDFCVSEIDQMR-TKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~~~~~~~~~~~~~~~r-~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~ 147 (815)
....++.+.+++.+.+.+ ...++|.+.+.........++++. +++++++|++.. .++++|+++|+..++.++. +
T Consensus 54 ~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g~~~~---~v~~~sGs~a~~~a~~~~~-~ 129 (447)
T 3h7f_A 54 ENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFA---NVQPHSGAQANAAVLHALM-S 129 (447)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHHHHC-C
T ss_pred CCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcCCCce---EEEeCCHHHHHHHHHHHhc-C
Confidence 445688888888766542 222344432111111111245454 999999998752 4447778899999999997 9
Q ss_pred CCc-EEEecCCCcchh-hH--HHHhhccc---eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 148 EGS-FIYLTDNHTSVL-GM--RELVKTNQ---IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~-~~--~~~~~~~g---~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+|| |++...+|++.+ .. ....+..- .++++. ++.++++.+++++. ..++++|+++.++|+++. +
T Consensus 130 ~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~------~~~~~~i~~~~~~~~~~~--~ 201 (447)
T 3h7f_A 130 PGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATAL------EFRPKVIIAGWSAYPRVL--D 201 (447)
T ss_dssp TTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHH------HHCCSEEEEECSSCCSCC--C
T ss_pred CCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHH------hcCCeEEEEcCCCCCCcc--C
Confidence 999 888888887732 11 11222211 234442 34567777776543 135789999899998876 9
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCCCCcEEEEccccccccCCcceEEEEeccccccc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVL 295 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l 295 (815)
+++|.++|+ ++|+++|+|++|+.|. ...+.. .++|+++.|+||++++|.| |+++.++++.+.+
T Consensus 202 l~~i~~l~~-----------~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l 268 (447)
T 3h7f_A 202 FAAFRSIAD-----------EVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAI 268 (447)
T ss_dssp HHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHH
T ss_pred HHHHHHHHH-----------HcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHH
Confidence 999999999 8999999999987642 111111 2579999999999988876 9999988776555
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
.+... .+..++++...+.++..++..+.. ..... ++..++++++.+.|.+...
T Consensus 269 ~~~~~-----------------------~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-- 323 (447)
T 3h7f_A 269 NSAVF-----------------------PGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDV-- 323 (447)
T ss_dssp HHHHT-----------------------TTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHH--
T ss_pred hhhcC-----------------------CcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 32211 122345666666676666655432 11222 7788888888888865300
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcC
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQG 453 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 453 (815)
..++++++... ..++++.+.+... .++...+.+.|.++||.++...... ....
T Consensus 324 ~~~g~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~l~~~GI~v~~~~i~~--~~~~---------------- 376 (447)
T 3h7f_A 324 AKAGVSVVSGG------TDVHLVLVDLRDS---PLDGQAAEDLLHEVGITVNRNAVPN--DPRP---------------- 376 (447)
T ss_dssp HHTTCEEGGGS------CSSSEEEEECTTS---SCCHHHHHHHHHHTTEECBC---------------------------
T ss_pred cCCCeEEecCC------CCCCEEEEEcCCC---CCCHHHHHHHHHHCCeEEecccCCC--CCCC----------------
Confidence 00256766421 1245666665432 1234457788888999987321100 0000
Q ss_pred CccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcCc
Q psy16512 454 HICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 454 ~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~~ 500 (815)
...++.+|+++... .+++|+++++++|.+++.+..+
T Consensus 377 -----------p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~~~ 416 (447)
T 3h7f_A 377 -----------PMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSS 416 (447)
T ss_dssp ---------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSGGG
T ss_pred -----------CCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhccCc
Confidence 01136799997654 4689999999999998876543
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=199.56 Aligned_cols=287 Identities=14% Similarity=0.094 Sum_probs=186.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEE-ecCCCcchhhHHHHhhccc--eEEcCc-hh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIY-LTDNHTSVLGMRELVKTNQ--IYSFSV-DD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~-~~~~h~s~~~~~~~~~~~g--~v~~~~-~~ 180 (815)
..++++++++++|.+. .++++|+++|+.+++.++. .+|+ +|+ ....|++.......+...| .++++. ++
T Consensus 50 ~~~l~~~la~~~~~~~----~i~~~~g~~a~~~a~~~~~-~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 124 (359)
T 3pj0_A 50 IEDFETKIAKILGKQS----AVFFPSGTMAQQIALRIWA-DRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTANQ 124 (359)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHH-HHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCTTS
T ss_pred HHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHHH-hcCCCcEEEEeccceeeehhcchHHHhcCceEEecCCcCC
Confidence 7899999999999854 3555888899999999887 6665 444 4455555443222212224 444443 33
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCC-ccccChHHH---HHHhhccccccccccCCCCeEEEEecccccCC-
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFS-GTKYPLSWC---NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS- 255 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~t-G~~~~l~~I---~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~- 255 (815)
.++++.+++ . .+++++|++++++|++ |.++|.+++ .++|+ ++|+++|+|+++..+.
T Consensus 125 ~~d~~~l~~-------~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~-----------~~~~~li~D~a~~~~~~ 185 (359)
T 3pj0_A 125 LLTIDDIKS-------L-REPVSSVLIELPQREIGGQLPAFEELEKISEYCH-----------EQGISLHLDGARLWEIT 185 (359)
T ss_dssp CCCHHHHHT-------C-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHH-----------HHTCEEEEEETTCGGGH
T ss_pred CcCHHHHHh-------c-cCCceEEEEEecccCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEECcchhcch
Confidence 456666554 2 4679999999999998 799998887 66666 8999999999875432
Q ss_pred -----CCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCccc--ccCceEEEEecCCcccccccCccccccCC
Q psy16512 256 -----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTF--YGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 256 -----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
.+.++. .+.|+++.|+||++++|.| |+++.++++++.++... .+++ ..
T Consensus 186 ~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~~-----------------------~~ 240 (359)
T 3pj0_A 186 PFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGGD-----------------------LI 240 (359)
T ss_dssp HHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTCC-----------------------CS
T ss_pred hhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCCC-----------------------cc
Confidence 111111 3578999999999987766 88888888776653211 1100 00
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEc-CCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELY-HDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~-~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
+.+....+++ .+++. ....+++..++++++.+.|+++ |++++. .+. .++++.+.++....
T Consensus 241 ~~~~~~~a~~-~~l~~---~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~-------~~~~~~~~~~~~~~-- 301 (359)
T 3pj0_A 241 SLYPYILSAD-YYFEK---RIGKMAEYFEAAKGLAERFNSC------SGVKTVPEVP-------VSNMFHVYFENSAD-- 301 (359)
T ss_dssp CCHHHHHHHH-HHHHH---HGGGHHHHHHHHHHHHHHHHTS------TTEEEESSSC-------SSSEEEEEESSCHH--
T ss_pred hhHHHHHHHH-HHHHH---HHHHhHHHHHHHHHHHHHHhhC------CCceeeccCC-------cceEEEEEecCccc--
Confidence 1122222222 23332 2223366788889999999988 788885 333 26777877754211
Q ss_pred cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC---CCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA---SNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~---~t~edi 484 (815)
.+..++.+.|.++||.+++|..+..+ ..+++|++++.. .+.+++
T Consensus 302 ~~~~~l~~~l~~~GV~v~~g~~~~~~---------------------------------~~~~~r~~i~~~~~~~~~e~l 348 (359)
T 3pj0_A 302 EIGAILTKIQDETGVGISGYLQEKSA---------------------------------DVCAFEVSVGDAFAEIPAKNL 348 (359)
T ss_dssp HHHHHHHHHHHHHCEECCSCCEEEET---------------------------------TEEEEEEECCTTGGGSCHHHH
T ss_pred hhHHHHHHHHHhcCcEecCCccccCC---------------------------------CceEEEEEecCccccCCHHHH
Confidence 12345788889999999988543211 137899998743 478888
Q ss_pred HHHHHHHHHH
Q psy16512 485 KYFLSFLNQY 494 (815)
Q Consensus 485 ~~lv~~L~~~ 494 (815)
+..++.|.+.
T Consensus 349 ~~~l~~l~~~ 358 (359)
T 3pj0_A 349 ELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888764
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=199.52 Aligned_cols=289 Identities=12% Similarity=0.074 Sum_probs=180.7
Q ss_pred HHHHHHHHhHcCCCC-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchhhhc
Q psy16512 108 DQMRTKILQYFNTDS-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDDARN 183 (815)
Q Consensus 108 ~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~~~~ 183 (815)
+++++.+++++|+++ ++ +++++|+++|+.+++.++ +|| |+++...|++...+...+...| .+.+ .+
T Consensus 61 ~~~~~~~a~~~g~~~~~~--~~~~~ggt~a~~~~~~~~---~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-----~d 130 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDK--CVGFNRTSSAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-----DK 130 (374)
T ss_dssp HHHHHHHHHHHTCCTTEE--EEEESSHHHHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-----SC
T ss_pred HHHHHHHHHHhCCCCcce--EEEEcChHHHHHHHHHhC---CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-----CC
Confidence 456677788999842 33 899999999999999987 788 8888887776555444445556 3333 24
Q ss_pred chhhhhhhhhhhhhcCCCccE-EEEecccCCCc-cccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC-CC-C
Q psy16512 184 MLNEFKESQENVENMRHSNSL-FVYPAESNFSG-TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-ML-D 259 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~l-v~i~~~~n~tG-~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~-d 259 (815)
++.+++ . ++++++ |++++++|||| ...++++|.++|+ ++|+++|+|++++.+.. +. .
T Consensus 131 ~~~l~~-------~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~-----------~~~~~li~De~~~~~~~~~~~~ 191 (374)
T 2aeu_A 131 VGEILN-------K-IDKDTLVIITGSTMDLKVIELENFKKVINTAK-----------NKEAIVFVDDASGARVRLLFNQ 191 (374)
T ss_dssp HHHHHT-------T-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHHH-----------HHTCCEEEECTTHHHHHHHTTC
T ss_pred HHHHHh-------c-CCCccEEEEEccCCCCCCCCcccHHHHHHHHH-----------HcCCEEEEECCccccccccccc
Confidence 444433 2 467899 99999999999 8889999999999 89999999998876531 11 1
Q ss_pred --CCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 --LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 --l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
...+++|+++.|+||+++++ ++|++++++++++.++... ....++++.....+
T Consensus 192 ~~~~~~~~di~~~S~sK~l~g~-~~G~~~~~~~~~~~l~~~~------------------------~~~~~~~~~~~~~a 246 (374)
T 2aeu_A 192 PPALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIYIEG------------------------TKFGLEAQPPLLAG 246 (374)
T ss_dssp CCHHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHHHHH------------------------HTTTCBCCHHHHHH
T ss_pred CCccccCCcEEEecCcccccCc-ceEEEEECHHHHHHHHHhh------------------------ccccCCCCHHHHHH
Confidence 11246899999999998855 7899999988876653221 11123556667777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc-
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELS--------QYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY- 408 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~--------~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~- 408 (815)
+.++++.+.. ..+++..+.+ +.+.+.|..+. ..+++.+..+. .+.++. ..........
T Consensus 247 ~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~g~~~~~~~-------~g~~~~-~~~~~~~~~~~ 313 (374)
T 2aeu_A 247 IYRALKNFNL--ERIRKAFERAKNFDLSKIEKLNKELKAID---DNINIVYERTP-------TGFVIK-RVYKDDTINIK 313 (374)
T ss_dssp HHHHHHHCCH--HHHHHHHHHHHHCCCHHHHHHHHHHTTTC---TTEEEEEEECS-------SEEEEE-EEESSHHHHHH
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccCcceeeCC-------ceEEEE-eeccccccccc
Confidence 7777765321 0122333333 33444443320 01245543222 133322 2211100000
Q ss_pred C-HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC-CCHHHHHH
Q psy16512 409 G-YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA-SNWDDVKY 486 (815)
Q Consensus 409 ~-~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~-~t~edi~~ 486 (815)
+ .....+++.++||.+++|..+. + ..+++||+++.. ..++++++
T Consensus 314 ~~~~~~~~ll~~~gV~v~~g~~~~---------------------------------~-~~~~lRi~~~~~~~~~~~l~~ 359 (374)
T 2aeu_A 314 KLIEIGFNLLKNYGIITITVAGMP---------------------------------G-ASKSLRIDLTSRDAERIDDNY 359 (374)
T ss_dssp HHHHHHHHHHHHHCEECSTTSSSC---------------------------------S-SCCSEEEETTSGGGGGSCHHH
T ss_pred chHHHHHHHHHhCCEEEecCCCCC---------------------------------C-CCCeEEEEcCCchHHHHHHHH
Confidence 0 0013356678899998874321 0 136899999742 23445899
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++.+.+
T Consensus 360 l~~~l~~~l~~ 370 (374)
T 2aeu_A 360 IIKAIVESIKM 370 (374)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=198.17 Aligned_cols=324 Identities=11% Similarity=0.056 Sum_probs=200.8
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CCC-----CCceeEEe--cCCc
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NTD-----SDHYSVIF--TSGA 133 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~~-----~~~~~iv~--t~g~ 133 (815)
-.|+|..+.+.+.+.+.+++.+........+.. +..... ..++|+.+++++ |.+ +++ |++ |+|+
T Consensus 57 g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~--Y~~~~G----~~~lr~~ia~~l~g~~~~~~~~~~--i~~~~t~gg 128 (448)
T 3meb_A 57 GAYRDESGKPWILPAVKEAEAIISSDLSKYNKE--YPPVAG----FPLFLEAAQFLMFGKDSKAAQEGR--IASCQSLSG 128 (448)
T ss_dssp CCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEESHH
T ss_pred ccccCCCCCEechHHHHHHHHHHhhcccCCCCC--CCCCcc----hHHHHHHHHHHhcCCCccccCcCc--EEEEECCcH
Confidence 356777777777777777654432111111222 111122 678999999987 876 455 999 9999
Q ss_pred hhhHHHH--HhhhccCCCc-EEEecCCCcchhhHHH----Hhhccc-eEEc-Cch--hhhcchhhhhhhhhhhhhcCCCc
Q psy16512 134 TSAIKTV--SEYFEFNEGS-FIYLTDNHTSVLGMRE----LVKTNQ-IYSF-SVD--DARNMLNEFKESQENVENMRHSN 202 (815)
Q Consensus 134 t~al~~~--~~al~~~~gd-vv~~~~~h~s~~~~~~----~~~~~g-~v~~-~~~--~~~~~~~~~~~l~~~~~~~~~~t 202 (815)
|+|+.++ +.++. .+|| |+++.+.|+++....+ .++... .++. +.+ ..++++.++++++ ...+++
T Consensus 129 t~al~l~~~~~~~~-~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~----~~~~~~ 203 (448)
T 3meb_A 129 TGSLHIGFEFLHLW-MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQ----SAPEKS 203 (448)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHH----HSCTTC
T ss_pred HHHHHHHHHHHHHh-CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHH----hCCCCc
Confidence 9999884 44555 7898 9999988888766555 333222 5555 443 4667777776553 112457
Q ss_pred cEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEecccccCC-CCC-----CC----CCCCCcEEE
Q psy16512 203 SLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-NML-----DL----KQHQPDFIS 269 (815)
Q Consensus 203 ~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-~~~-----dl----~~~~~D~vv 269 (815)
+++++++++||||..++.++ |+++|+ ++|+++++|+++.... ... .+ ......+++
T Consensus 204 ~~v~~~~p~NPtG~~~~~~~l~~i~~l~~-----------~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (448)
T 3meb_A 204 IFLFHACAHNPSGIDFTEAQWKELLPIMK-----------EKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVA 272 (448)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHH-----------HHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHH-----------HCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEE
Confidence 89999999999999999777 555666 8999999999965322 111 00 111234678
Q ss_pred EccccccccCCc--ceEE--EE--------ec-----ccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 270 ISFYKMFGYPTG--LGAL--IV--------KQ-----KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 270 ~S~~K~~g~p~G--~G~l--~~--------~~-----~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
.|+||.|| ++| +|++ ++ ++ ++.+.+... .+....+++.
T Consensus 273 ~S~SK~~g-~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~------------------------~~~~~~~~~~ 327 (448)
T 3meb_A 273 QSFSKNFG-LYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ------------------------IRKTWSMSAI 327 (448)
T ss_dssp EECTTTSC-CGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH------------------------HHTTTSSCCH
T ss_pred ecccccCC-CccccceeeeeeeccccccccCCHHHHHHHHHHHHHH------------------------HhcccCCccH
Confidence 89999999 667 7998 55 33 222222110 1122334555
Q ss_pred hHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHHHhccccCCCCc------EEEcCCCCCCCCCcccceEEEE
Q psy16512 333 LAIISLKYGFDTM-------EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL------VELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 333 ~~~~al~~al~~l-------~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~------~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.+..++..+++.. .......+++.++++++.+.|+++. .++ +....+. ++++.|
T Consensus 328 ~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~~~~~~~~~~~~~--------~g~~~~- 394 (448)
T 3meb_A 328 HGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK----TPGPGSKGTWDHILTA--------IGMFTF- 394 (448)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCSTTTCCCTHHHHC--------CSSEEE-
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCcCcccccceeCCC--------ceEEEe-
Confidence 6666665555432 1111122788889999999998761 122 2222222 333333
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
.+.+ ...+..++.++||.+.+|+ + |+|++..
T Consensus 395 -~~~~-----~~~~~~ll~~~gV~v~~G~----------------------------------------g--Ris~a~~- 425 (448)
T 3meb_A 395 -TGLT-----PEHVDYLKEKWSIYLVKAG----------------------------------------G--RMSMCGL- 425 (448)
T ss_dssp -CCCC-----HHHHHHHHHHHCEEECSGG----------------------------------------G--EEEGGGC-
T ss_pred -cCCC-----HHHHHHHHHhCCEEEeCCC----------------------------------------c--EEEEecC-
Confidence 2211 2235566688999997641 2 9999754
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy16512 480 NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~ 496 (815)
+.++|++++++|.+++.
T Consensus 426 ~~~~i~~~~~~l~~~l~ 442 (448)
T 3meb_A 426 TESNCDYVAEAIHDAVT 442 (448)
T ss_dssp CTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45669999999999875
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=192.87 Aligned_cols=325 Identities=13% Similarity=0.072 Sum_probs=207.2
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++.... +..... .... .+++++++++++|. ++ ++||+|++
T Consensus 56 g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~ggt 124 (420)
T 2pb2_A 56 GKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW--HTSNVF-TNEP----ALRLGRKLIDATFA--ER--VLFMNSGT 124 (420)
T ss_dssp CCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC--CCCTTS-CCHH----HHHHHHHHHHHSSC--SE--EEEESSHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhcc--cccCcc-CCHH----HHHHHHHHHhhCCC--Ce--EEEeCCHH
Confidence 4456666432 2346788888887765422 221111 2233 78899999999984 44 99999999
Q ss_pred hhHHHHHhhhccC-------CCc--EEEecCCCcc-hhhHHHHhhcc----c-------eEEcCchhhhcchhhhhhhhh
Q psy16512 135 SAIKTVSEYFEFN-------EGS--FIYLTDNHTS-VLGMRELVKTN----Q-------IYSFSVDDARNMLNEFKESQE 193 (815)
Q Consensus 135 ~al~~~~~al~~~-------~gd--vv~~~~~h~s-~~~~~~~~~~~----g-------~v~~~~~~~~~~~~~~~~l~~ 193 (815)
+|+.+++.++. . +|+ ||+....|+. ...+....+.. + ...+.. .+++.+++
T Consensus 125 eA~~~al~~~~-~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~---~d~~~le~---- 196 (420)
T 2pb2_A 125 EANETAFKLAR-HYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF---NDLHAVKA---- 196 (420)
T ss_dssp HHHHHHHHHHH-HHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT---TCHHHHHH----
T ss_pred HHHHHHHHHHH-HHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC---CCHHHHHH----
Confidence 99999999875 3 563 7777766544 33333332211 1 111111 14444444
Q ss_pred hhhhcCCCccEEEEecccCCCcc-ccC---hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGT-KYP---LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~-~~~---l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~ 264 (815)
.+.+++++|+++.++|++|. .+| +++|.++|+ ++|+++|+|+++. ++.. .+ +.....
T Consensus 197 ---~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~-----------~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~ 262 (420)
T 2pb2_A 197 ---VMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCD-----------EHQALLVFDEVQCGMGRTGDLFAYMHYGVT 262 (420)
T ss_dssp ---HCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred ---HhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHH-----------HcCCEEEEEcCCcCcccCCcHHHHHhcCCC
Confidence 33467999999999998886 344 666777777 8999999999985 2211 11 111235
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
+|++ |++|++++...+|++++++++++.+.+...+ ...+.|..+..++.++++.
T Consensus 263 ~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~------------------------~t~~~~~~~~aa~~a~L~~ 316 (420)
T 2pb2_A 263 PDIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHG------------------------STYGGNPLACAVAGAAFDI 316 (420)
T ss_dssp CSEE--EECGGGGTTSCCEEEEECHHHHTTCC----C------------------------CEECCCHHHHHHHHHHHHH
T ss_pred CCeE--EecccccCCCceEEEEEhHHHHHhhcCCCcC------------------------cccCcCHHHHHHHHHHHHH
Confidence 7876 6789998222389999998876655331100 0114566777777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.. ....++.+++++++.+.|+++.. +.|.+.... ..+.++.+.+..... .+..++.+.|.++||.+
T Consensus 317 ~~~-~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~--------~~g~~~~v~~~~~~~--~~~~~l~~~l~~~Gi~v 383 (420)
T 2pb2_A 317 INT-PEVLQGIHTKRQQFVQHLQAIDE--QFDIFSDIR--------GMGLLIGAELKPKYK--GRARDFLYAGAEAGVMV 383 (420)
T ss_dssp HSS-HHHHHHHHHHHHHHHHHHHHHHH--HHCCEEEEE--------EETTEEEEEECGGGT--TCHHHHHHHHHHTTEEC
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHh--cCCCeEEEE--------ecceEEEEEECCCch--HHHHHHHHHHHHCCCEE
Confidence 654 12238888899999998876510 002333221 237888888764211 12345778888899998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++. .+++|+++++..+++|+++++++|++++.
T Consensus 384 ~~~~---------------------------------------~~~iRl~~~~~~t~eei~~~~~~l~~~l~ 416 (420)
T 2pb2_A 384 LNAG---------------------------------------ADVMRFAPSLVVEEADIHEGMQRFAQAVG 416 (420)
T ss_dssp EESS---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EeCC---------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 7641 26899999988999999999999998764
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=195.15 Aligned_cols=342 Identities=12% Similarity=0.047 Sum_probs=214.5
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
..|+|..+. +..++.+.+++.+.+.... .+.. ...... ..++++.++++++.++++ |+||+|++
T Consensus 50 ~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~----~~~l~~~la~~~~~~~~~--v~~~~ggs 120 (449)
T 3a8u_X 50 RKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD---YSPGFQYGHPL----SFQLAEKITDLTPGNLNH--VFFTDSGS 120 (449)
T ss_dssp CEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS---CCCSSSCCCHH----HHHHHHHHHTTSSTTEEE--EEEESSHH
T ss_pred CEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC---CccccccCCHH----HHHHHHHHHHhCCCCCCE--EEEcCcHH
Confidence 456665321 2346888888877765321 1111 112233 678999999999877665 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcc-hhhHHHHhhc-----------cc--eEEcCchhh-----hc----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTS-VLGMRELVKT-----------NQ--IYSFSVDDA-----RN---- 183 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s-~~~~~~~~~~-----------~g--~v~~~~~~~-----~~---- 183 (815)
+|+.+++.++.. .+++ ||+....|+. ........+. .+ .++++.... ++
T Consensus 121 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~ 200 (449)
T 3a8u_X 121 ECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEG 200 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHH
Confidence 999999988751 1566 7776665544 4434433221 12 233221100 12
Q ss_pred ----chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 184 ----MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 184 ----~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
++.++++++ +...+++++|+++..+|+||.+.| +++|.++|+ ++|+++|+|+++. +|
T Consensus 201 ~~~~~~~le~~l~---~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~-----------~~~~~li~Dev~~~~g 266 (449)
T 3a8u_X 201 GIALADELLKLIE---LHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICN-----------QHNILLVFDEVITGFG 266 (449)
T ss_dssp HHHHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHHH---hcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHH-----------HhCCEEEEeccccCcc
Confidence 455554332 111135788888887888999888 999999999 8999999999994 55
Q ss_pred CCC--CCCC--CCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 255 SNM--LDLK--QHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 255 ~~~--~dl~--~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
... ..+. ...+|++ |++|+|+ + | +|++++++++++.+......... ... .....
T Consensus 267 ~~g~~~~~~~~~~~~di~--s~sK~l~-~-G~~~~G~~~~~~~~~~~l~~~~~~~~~--------------~~~-~~~~t 327 (449)
T 3a8u_X 267 RTGSMFGADSFGVTPDLM--CIAKQVT-N-GAIPMGAVIASTEIYQTFMNQPTPEYA--------------VEF-PHGYT 327 (449)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGG-T-TSSCCEEEEEEHHHHHHHHTCSSCTTS--------------CSS-CCCCT
T ss_pred ccCcchhhhhcCCCCCEE--EEccccc-C-CCCceEEEEECHHHHHHhhccCccccc--------------ccc-cccCC
Confidence 321 1111 2347866 7779998 4 5 89999998776655321100000 000 00112
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~ 407 (815)
.+.|.++++++.++++.+... ...++.+++++++.+.|+++. ..+.+..+ ...+.++++.++......
T Consensus 328 ~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~~~~~--------~~~g~~~~i~~~~~~~~~ 395 (449)
T 3a8u_X 328 YSAHPVACAAGLAALCLLQKE-NLVQSVAEVAPHFEKALHGIK---GAKNVIDI--------RNFGLAGAIQIAPRDGDA 395 (449)
T ss_dssp TTTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTT---TSTTEEEE--------EEETTEEEEEECCBTTBS
T ss_pred CcccHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh---cCCCeEEE--------eeeEEEEEEEEecCcccc
Confidence 245677777778888877652 233888999999999998752 01333222 123788888886432110
Q ss_pred -cCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 408 -YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 408 -~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
.+..++.+.|.++||.++++ .+++|+++++..+++|+++
T Consensus 396 ~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRis~~~~~t~~~i~~ 435 (449)
T 3a8u_X 396 IVRPFEAGMALWKAGFYVRFG----------------------------------------GDTLQFGPTFNSKPQDLDR 435 (449)
T ss_dssp SHHHHHHHHHHHHHTEECEEE----------------------------------------TTEEEECCCTTCCHHHHHH
T ss_pred cccHHHHHHHHHHCCcEEecC----------------------------------------CCEEEEECCCcCCHHHHHH
Confidence 01124777777889998753 1579999998999999999
Q ss_pred HHHHHHHHHhh
Q psy16512 487 FLSFLNQYFLQ 497 (815)
Q Consensus 487 lv~~L~~~~~~ 497 (815)
++++|++++.+
T Consensus 436 ~l~~l~~~l~~ 446 (449)
T 3a8u_X 436 LFDAVGEVLNK 446 (449)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998743
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-18 Score=190.14 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=204.1
Q ss_pred hhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|..+.. ..++.+.+++.+++.......+. ...... ..+++++++++++.+.++ |+||+|+++
T Consensus 29 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~e 100 (430)
T 3i4j_A 29 RRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGS--QFSSDV----LEEYAGRLARFVGLPTFR--FWAVSGGSE 100 (430)
T ss_dssp CEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT--TCEEHH----HHHHHHHHHHHTTCTTCE--EEEESSHHH
T ss_pred CEEEECCCchhccccCCCCHHHHHHHHHHHHhccccccc--ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCcHHH
Confidence 4566665431 23788888888776543221111 122233 678889999999987776 999999999
Q ss_pred hHHHHHhhhcc-------CCCc-EEEecCCCcchhhHHHHhhcc--------------c--eEEcCch---hhhcchhhh
Q psy16512 136 AIKTVSEYFEF-------NEGS-FIYLTDNHTSVLGMRELVKTN--------------Q--IYSFSVD---DARNMLNEF 188 (815)
Q Consensus 136 al~~~~~al~~-------~~gd-vv~~~~~h~s~~~~~~~~~~~--------------g--~v~~~~~---~~~~~~~~~ 188 (815)
|+..++.++.. ..++ +|+....|+........+... + .++.+.. +..+++.++
T Consensus 101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 180 (430)
T 3i4j_A 101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR 180 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence 99999988752 1244 777776655433221111111 1 1222111 122345555
Q ss_pred hhhhhhhhhcC-CCccEEEEecccC-CCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCC
Q psy16512 189 KESQENVENMR-HSNSLFVYPAESN-FSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLD 259 (815)
Q Consensus 189 ~~l~~~~~~~~-~~t~lv~i~~~~n-~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~d 259 (815)
++++ ... +++++|+++.++| ++|.+.+ +++|.++|+ ++|+++|+|+++. ++.. ...
T Consensus 181 ~~l~----~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~~~~~~g~~~~ 245 (430)
T 3i4j_A 181 ALLE----REGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICD-----------EAGIIFIADEVMSGMGRCGSPLA 245 (430)
T ss_dssp HHHH----HHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSG
T ss_pred HHHH----hcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHH-----------HcCCEEEEechhhCCCcccchhh
Confidence 5443 111 4567888888888 9999887 888899998 8999999999976 3221 111
Q ss_pred CC---CCCCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 260 LK---QHQPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 260 l~---~~~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
.. ...+|++ +++|.++ + | +|++++++++++.+.+.- .. . ......+.|.+
T Consensus 246 ~~~~~~~~~di~--t~sK~l~-~-G~~r~G~~~~~~~i~~~~~~~~---~~----------------~-~~~~t~~~~~~ 301 (430)
T 3i4j_A 246 LSRWSGVTPDIA--VLGKGLA-A-GYAPLAGLLAAPQVYETVMGGS---GA----------------F-MHGFTYAGHPV 301 (430)
T ss_dssp GGGTTTCCCSEE--EECGGGT-T-TSSCCEEEEECHHHHHHHHHTT---CB----------------C-CCCCTTTTCHH
T ss_pred hhhhcCCCCcEE--EEccccc-C-CccccEEEEECHHHHHHHhccC---Cc----------------c-cccCCCCCCHH
Confidence 11 2346766 4679998 4 5 799999988876553210 00 0 01112245677
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc-----c
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY-----Y 408 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~-----~ 408 (815)
+..++.++++.+... ...++.+++.+++.+.|.++. ...|.+..+.+ .+.++.+.+.+..... -
T Consensus 302 ~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 3i4j_A 302 SVAAGLSVLDIVERE-DLTGAAKERGAQLLAGLQALQ--ARFPQMMQVRG--------TGLLLGVVLGDLATGQAFETPG 370 (430)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--HHCTTEEEEEE--------ETTEEEEEEC------------
T ss_pred HHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHH--HhCCCeEEEEE--------EEEEEEEEeccccccCCCccHH
Confidence 777777888876542 223667777777777665531 00145554432 3678888875322100 0
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
...++.+.|.++||.++++.+... +...+++||++++..+++++++++
T Consensus 371 ~~~~~~~~l~~~Gv~v~~~~~~~~--------------------------------~~~~~~iRi~~~~~~t~e~i~~~l 418 (430)
T 3i4j_A 371 IASRIGAAALKRGLITYPGSGAEP--------------------------------NGRGDHLLLGPPLSITAAEVDGLL 418 (430)
T ss_dssp CHHHHHHHHHHTTEECC-------------------------------------------CEEEECCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEecccccC--------------------------------CCCCCEEEEECCCCCCHHHHHHHH
Confidence 123577888899999987632111 111378999999889999999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|++++.+
T Consensus 419 ~~l~~~l~~ 427 (430)
T 3i4j_A 419 ALLAGALED 427 (430)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-18 Score=189.08 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=206.1
Q ss_pred hhhhhhhhccc---c---c-chhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCC
Q psy16512 61 DICYLDYTGAG---V---Y-SQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSG 132 (815)
Q Consensus 61 ~~iyLd~a~~~---~---~-p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g 132 (815)
+..|+|..+.. + . ++.+.+++.+.+.......+.+ + .... ..++++.+++++|.+ +++ |+||+|
T Consensus 41 g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~-~-~~~~----~~~l~~~la~~~~~~~~~~--v~~~~g 112 (419)
T 2eo5_A 41 GNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND-F-YNIP----QLELAKKLVTYSPGNFQKK--VFFSNS 112 (419)
T ss_dssp SCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC-S-CCHH----HHHHHHHHHHHSSCSSCEE--EEEESS
T ss_pred CCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc-c-CCHH----HHHHHHHHHHhCCCCcCCE--EEEeCc
Confidence 34677765433 2 2 6888898888775422111111 1 1122 567888999999987 555 999999
Q ss_pred chhhHHHHHhhhccCCCc-EEEecCCCc-chhhHHHHhhc------------cc--eEEcCchhh---------------
Q psy16512 133 ATSAIKTVSEYFEFNEGS-FIYLTDNHT-SVLGMRELVKT------------NQ--IYSFSVDDA--------------- 181 (815)
Q Consensus 133 ~t~al~~~~~al~~~~gd-vv~~~~~h~-s~~~~~~~~~~------------~g--~v~~~~~~~--------------- 181 (815)
+++|+.+++.++...+|+ ||+....|+ +.......... .+ .++.+.+..
T Consensus 113 g~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~ 192 (419)
T 2eo5_A 113 GTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192 (419)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhH
Confidence 999999999876421366 877776554 44433332111 02 333332110
Q ss_pred -hcchhhh-hhhhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-c
Q psy16512 182 -RNMLNEF-KESQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-C 253 (815)
Q Consensus 182 -~~~~~~~-~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~ 253 (815)
.+++.++ ++++ +... +++++|+++.++|+||.+.+ +++|.++|+ ++|+++|+|+++. +
T Consensus 193 ~~~~~~l~~~~i~---~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~-----------~~~~~li~DE~~~~~ 258 (419)
T 2eo5_A 193 NRVIEFIEDYIFV---NLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAK-----------KYGILLVDDEVQMGL 258 (419)
T ss_dssp HHHHHHHHHTHHH---HTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTT
T ss_pred HHHHHHHHHHHHh---hccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCC
Confidence 2345555 5432 1100 34677777766778998777 888888888 8999999999987 4
Q ss_pred CCCC----CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCC
Q psy16512 254 GSNM----LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDG 328 (815)
Q Consensus 254 g~~~----~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 328 (815)
+... ++.....+|++ |++|.|+++ -++|+++++++++ .+ ... .....
T Consensus 259 g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~------------------------~~~t~ 310 (419)
T 2eo5_A 259 GRTGKLFAIENFNTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGM------------------------HSNTF 310 (419)
T ss_dssp TTTSSSSGGGGGTCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC-------------------------------CC
T ss_pred ccCcchhhHHhcCCCCCEE--EecccccCCccceEEEEEchHhh-cC-Ccc------------------------cCCCC
Confidence 3221 12223356765 688999843 4579999998765 43 100 01122
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCcc
Q psy16512 329 TVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 329 t~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~ 408 (815)
+.|.+++.++.++++.+.+ ..++++++++++.+.|.++. ..+ ...++++.+.+.. +. .
T Consensus 311 ~~n~~~~~aa~aal~~~~~---~~~~~~~~~~~l~~~L~~~~-----~~~-----------~~~g~~~~i~~~~-~~-~- 368 (419)
T 2eo5_A 311 GGNALACAIGSKVIDIVKD---LLPHVNEIGKIFAEELQGLA-----DDV-----------RGIGLAWGLEYNE-KK-V- 368 (419)
T ss_dssp CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTTSS-----SEE-----------EEETTEEEEECSC-HH-H-
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh-----hhe-----------EeeeEEEEEEEec-Cc-c-
Confidence 4577888888888887654 34888899999999987640 111 1236777777631 00 0
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
... +.+.|.++||.++++. .+++||++++..+++++++++
T Consensus 369 ~~~-~~~~l~~~Gv~v~~~~---------------------------------------~~~lRis~~~~~t~e~i~~~l 408 (419)
T 2eo5_A 369 RDR-IIGESFKRGLLLLPAG---------------------------------------RSAIRVIPPLVISEEEAKQGL 408 (419)
T ss_dssp HHH-HHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred HHH-HHHHHHHCCCEEecCC---------------------------------------CCEEEEECCCCCCHHHHHHHH
Confidence 122 5666778999987641 268999999999999999999
Q ss_pred HHHHHHHh
Q psy16512 489 SFLNQYFL 496 (815)
Q Consensus 489 ~~L~~~~~ 496 (815)
++|++++.
T Consensus 409 ~~l~~~l~ 416 (419)
T 2eo5_A 409 DILKKVIK 416 (419)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=7.1e-18 Score=190.35 Aligned_cols=340 Identities=11% Similarity=0.035 Sum_probs=213.0
Q ss_pred hhhhhhhhcccc------cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCc
Q psy16512 61 DICYLDYTGAGV------YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~~~------~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~ 133 (815)
+..|+|..+... .++.+.+++.+.+.... +.......... ..+++++++++++... ++ ++||+|+
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~----~~~l~~~la~~~~~~~~~~--v~~~~gg 113 (439)
T 3dxv_A 42 GRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA--GATILSASNAP----AVTLAERLLASFPGEGTHK--IWFGHSG 113 (439)
T ss_dssp SCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS--CSCSSSSEEHH----HHHHHHHHHHTTTCTTTEE--EEEESSH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc--CccccccCCHH----HHHHHHHHHHhCCCCCCCE--EEEeCCH
Confidence 345666654333 56788888877765421 11111222333 7789999999997655 44 9999999
Q ss_pred hhhHHHHHhhhc--cCCCcEEEecCCC-cchhhHHHHhhcc------c---------eEEcCchhhh-----cchhhhhh
Q psy16512 134 TSAIKTVSEYFE--FNEGSFIYLTDNH-TSVLGMRELVKTN------Q---------IYSFSVDDAR-----NMLNEFKE 190 (815)
Q Consensus 134 t~al~~~~~al~--~~~gdvv~~~~~h-~s~~~~~~~~~~~------g---------~v~~~~~~~~-----~~~~~~~~ 190 (815)
++|+..++.++. ..++++|+....| .+........... + .++.+..... +++.++++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 193 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK 193 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence 999999998842 1445577666554 4443332221110 0 1111111000 34455543
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC----CCCCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS----NMLDLK 261 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~----~~~dl~ 261 (815)
++ +...+++++|+++.++|++|.+.| +++|.++|+ +||+++|+|+++. ++. ...+..
T Consensus 194 l~---~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DE~~~g~g~~g~~~~~~~~ 259 (439)
T 3dxv_A 194 LA---AVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICR-----------AHGILVVCDEVKVGLARSGRLHCFEHE 259 (439)
T ss_dssp HH---TSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTCTTTTSSSSGGGGT
T ss_pred HH---hcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCcCchhhHHHhc
Confidence 31 112456899999999999999999 899999999 8999999999986 221 111222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
...+|++ |++|.|+ + | +|++++++++++.+.+... .... .+..++.++.
T Consensus 260 ~~~~di~--s~sK~~~-~-G~riG~~~~~~~~~~~~~~~~~------------------------~~t~-~~~~~~~aa~ 310 (439)
T 3dxv_A 260 GFVPDIL--VLGKGLG-G-GLPLSAVIAPAEILDCASAFAM------------------------QTLH-GNPISAAAGL 310 (439)
T ss_dssp TCCCSEE--EECGGGG-T-TSCCEEEEEEHHHHTSCSSSSC------------------------CTTT-TCHHHHHHHH
T ss_pred CCCCCEE--EEcchhc-C-CcceEEEEECHHHHhhhcCCCc------------------------CCCc-ccHHHHHHHH
Confidence 3357776 7889998 4 5 7999999888766543210 1112 4566677777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC----CccCHHHHHH
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG----TYYGYSEVQN 415 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~----~~~~~~~v~~ 415 (815)
++++.+.. ....++.+++++++.+.|.++... .+.+.... ..+.++.+.+..... .......+.+
T Consensus 311 aal~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (439)
T 3dxv_A 311 AVLETIDR-DDLPAMAERKGRLLRDGLSELAKR--HPLIGDIR--------GRGLACGMELVCDRQSREPARAETAKLIY 379 (439)
T ss_dssp HHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH--CTTEEEEE--------EETTEEEEEEEEETTTTEECHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHh--CCCeEEEE--------EEEEEEEEEEecCccccCCCHHHHHHHHH
Confidence 77776655 222377788888888877664100 03344332 236788887742110 1111335777
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.++++.. ..+++|+++++..+++++++++++|++++
T Consensus 380 ~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 422 (439)
T 3dxv_A 380 RAYQLGLVVYYVGM-------------------------------------NGNVLEFTPPLTITETDIHKALDLLDRAF 422 (439)
T ss_dssp HHHHHTEECEEEST-------------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEeecCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 78788999886521 13789999999999999999999999988
Q ss_pred hhcC
Q psy16512 496 LQQA 499 (815)
Q Consensus 496 ~~~~ 499 (815)
.+-.
T Consensus 423 ~~~~ 426 (439)
T 3dxv_A 423 SELS 426 (439)
T ss_dssp HTGG
T ss_pred HHHh
Confidence 6543
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-17 Score=185.67 Aligned_cols=325 Identities=12% Similarity=0.069 Sum_probs=211.6
Q ss_pred hhhhhhhhcc---cc---cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA---GV---YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~---~~---~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. .. .++.+.+++.+++.... +.++.. .... ..++++++++++|. +. ++|++|++
T Consensus 75 g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~sGs 143 (439)
T 2oat_A 75 GRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT--LTSRAF-YNNV----LGEYEEYITKLFNY--HK--VLPMNTGV 143 (439)
T ss_dssp CCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS--CCCTTS-EESS----HHHHHHHHHHHHTC--SE--EEEESSHH
T ss_pred CCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC--cccCcc-CCHH----HHHHHHHHHHhcCC--CE--EEEeCCHH
Confidence 4567775441 11 56888888887765422 111111 2233 77899999999984 44 99999999
Q ss_pred hhHHHHHhhhcc--------CCC-c-EEEecCCC-cchhhHHHHhhc-----------cceEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEYFEF--------NEG-S-FIYLTDNH-TSVLGMRELVKT-----------NQIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~al~~--------~~g-d-vv~~~~~h-~s~~~~~~~~~~-----------~g~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+..++.++.. .+| + +|+....| .+.......... .+...+.. .+++.++++++
T Consensus 144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---~d~~~le~~l~ 220 (439)
T 2oat_A 144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY---NDLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS---SCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC---CCHHHHHHHhC
Confidence 999999987641 246 5 77777655 444444333221 11222221 14445544331
Q ss_pred hhhhhcCCCccEEEEecccCCCcccc----ChHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--C--CCCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKY----PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--M--LDLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~----~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~--~dl~~~ 263 (815)
.+++++|+++.+++++|.+. ++++|.++|+ ++|+++|+|+++. ++.. . .+....
T Consensus 221 ------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~g~g~~g~~~~~~~~~~ 283 (439)
T 2oat_A 221 ------DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCT-----------RHQVLFIADEIQTGLARTGRWLAVDYENV 283 (439)
T ss_dssp ------STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred ------CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCccCCcchhHHHhCC
Confidence 35688999888888899877 6888999998 8999999999984 2211 1 111223
Q ss_pred CCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
.+|++ |++|.+++. ..+|++++++++++.+.+... ....+.|..+.+++.+++
T Consensus 284 ~~Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~------------------------~~t~~~~~~~~aaa~aal 337 (439)
T 2oat_A 284 RPDIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEH------------------------GSTYGGNPLGCRVAIAAL 337 (439)
T ss_dssp CCSEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSS------------------------CCSSTTCHHHHHHHHHHH
T ss_pred CCcEE--EecccccCCCCCeEEEEECHHHHhccCCCCc------------------------ccCCCcCHHHHHHHHHHH
Confidence 57876 788999831 128999999887765543110 001144667777777888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCc
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKI 422 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI 422 (815)
+.+... ...++.+++++++.+.|+++. .+.+... ...+.++.+.+..... .+..++.+.|.++||
T Consensus 338 ~~~~~~-~~~~~~~~~~~~l~~~L~~l~----~~~~~~~--------~~~g~~~~v~l~~~~~--~~~~~l~~~l~~~Gv 402 (439)
T 2oat_A 338 EVLEEE-NLAENADKLGIILRNELMKLP----SDVVTAV--------RGKGLLNAIVIKETKD--WDAWKVCLRLRDNGL 402 (439)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHTTSC----TTTEEEE--------EEETTEEEEEECCCSS--CCHHHHHHHHHHTTE
T ss_pred HHHhhh-hHHHHHHHHHHHHHHHHHHhc----CCCcEEE--------EeeeeEEEEEEecCcc--HHHHHHHHHHHHCCe
Confidence 877653 223889999999999998762 1322222 1236888888764311 123467888888999
Q ss_pred EeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 423 QLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 423 ~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.++++. .+++|+++++..+++|+++++++|++++.
T Consensus 403 ~v~~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 437 (439)
T 2oat_A 403 LAKPTH---------------------------------------GDIIRFAPPLVIKEDELRESIEIINKTIL 437 (439)
T ss_dssp ECCBSS---------------------------------------SSEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEecCC---------------------------------------CCEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 987520 27899999999999999999999998764
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=197.92 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=108.5
Q ss_pred eEEecCCchhhHHHHHhhh----ccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhh--hcchhhhhhhhhh
Q psy16512 126 SVIFTSGATSAIKTVSEYF----EFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDA--RNMLNEFKESQEN 194 (815)
Q Consensus 126 ~iv~t~g~t~al~~~~~al----~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~--~~~~~~~~~l~~~ 194 (815)
+|++|+|+++|+.+++.++ ..++|| |++..+.|+.+....... ..| .++.++++. ++++.++++
T Consensus 167 ~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~~~l~~~---- 241 (546)
T 2zy4_A 167 NLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELA-QYALEEVAINADPSLNWQYPDSELDKL---- 241 (546)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHST-TSCCEEEEEECBGGGTTBCCHHHHGGG----
T ss_pred eEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHc-CCCcEEEEEecCcccCCCCCHHHHHHh----
Confidence 4999999999999999884 127899 888888887766544333 223 455555442 555555542
Q ss_pred hhhcCCCccEEEEecccCCCccccChHHHHHHhhcccccccccc--CCCCeEEEEecccccCCC-CCCCCC--CCCcEEE
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC--SRSNCFVLLDAATYCGSN-MLDLKQ--HQPDFIS 269 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~--~~~gi~vivD~a~~~g~~-~~dl~~--~~~D~vv 269 (815)
..+++++|++++++||||.++|.+++.++++ .| +++|+++|+|++++.... +.++.. .+.++++
T Consensus 242 ---~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~--------~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~ 310 (546)
T 2zy4_A 242 ---KDPAIKIFFCVNPSNPPSVKMDQRSLERVRN--------IVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLV 310 (546)
T ss_dssp ---GSTTEEEEEEESSCSSSCBCCCHHHHHHHHH--------HHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEE
T ss_pred ---hCCCCeEEEEECCCCCCCccCCHHHHHHHHH--------HHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEE
Confidence 3467999999999999999999777655544 22 389999999999874331 111111 1356889
Q ss_pred EccccccccCCc--ceEEEEecc-ccccc
Q psy16512 270 ISFYKMFGYPTG--LGALIVKQK-SAHVL 295 (815)
Q Consensus 270 ~S~~K~~g~p~G--~G~l~~~~~-~~~~l 295 (815)
.|+||+|| .+| +||++++++ +++.+
T Consensus 311 ~S~SK~~g-~~GlRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 311 YSFSKYFG-ATGWRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp EESTTTTT-CGGGCEEEEEEESSCHHHHH
T ss_pred EeCccccC-CCCcceEEEEECCHHHHHHH
Confidence 99999998 558 799999886 55443
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=192.96 Aligned_cols=285 Identities=13% Similarity=0.093 Sum_probs=187.0
Q ss_pred HHHHHHHHHhHcC------CCCCceeEEecCCchhhHHHHHhhh--------ccCCCc-EEEecCCCcchhhHHHHhhcc
Q psy16512 107 IDQMRTKILQYFN------TDSDHYSVIFTSGATSAIKTVSEYF--------EFNEGS-FIYLTDNHTSVLGMRELVKTN 171 (815)
Q Consensus 107 ~~~~r~~la~~~g------~~~~~~~iv~t~g~t~al~~~~~al--------~~~~gd-vv~~~~~h~s~~~~~~~~~~~ 171 (815)
..++|+.++++++ +++++ |++|+|+++|+.+++.++ . ++|| |++..+.|+.+....+..+..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~--iv~t~G~~~al~~~~~~l~~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~ 178 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRY--IVFGVGVTQLIHGLVISLSPNMTATPD-APESKVVAHAPFYPVFREQTKYFDKK 178 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCE--EEEESHHHHHHHHHHHHHSCCTTTCTT-SCCEEEEECSSCCHHHHHHHHHSCBT
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCE--EEEeCCHHHHHHHHHHHHhhccccccC-CCCCEEEEeCCCcccHHHHHHHcCCe
Confidence 5678889998886 56665 999999999999999999 5 8999 888888887766555443222
Q ss_pred ceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 172 QIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 172 g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
.+. ..++++.+++++ .+++++|++++++||||.+++ + +++ ++..++|.++
T Consensus 179 -~~~----~~~d~~~l~~~~-------~~~~k~v~l~~p~NPtG~~~~-~----~l~-------------~~~~i~d~~~ 228 (427)
T 2hox_A 179 -GYV----WAGNAANYVNVS-------NPEQYIEMVTSPNNPEGLLRH-A----VIK-------------GCKSIYDMVY 228 (427)
T ss_dssp -TEE----EEEEGGGGTTCS-------CGGGEEEEEESSCTTTCCCCC-C----SST-------------TCEEEEECTT
T ss_pred -eee----ecCCHHHHHHhh-------cCCceEEEEcCCCCCcccccH-H----HHc-------------CCCEEEeecc
Confidence 221 123445555433 356899999999999999999 4 334 2467888776
Q ss_pred ccCCC-CCCCCCCCCcEEEEccccccccCCc--ceEEEEe-cccccccCcccccCceEEEEecCCcccccccCccccccC
Q psy16512 252 YCGSN-MLDLKQHQPDFISISFYKMFGYPTG--LGALIVK-QKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 252 ~~g~~-~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~-~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
+.+.. ..++. .+.++++.|+||.|| ++| +||++++ +++++.+.... ....
T Consensus 229 ~~~~~s~~~~~-~~~~i~~~S~SK~~g-~~G~RiG~~~~~~~~l~~~l~~~~------------------------~~~~ 282 (427)
T 2hox_A 229 YWPHYTPIKYK-ADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYM------------------------TKNT 282 (427)
T ss_dssp CSTTTSCCCSC-BCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHH------------------------HHHT
T ss_pred cCCCCCccccC-CCceEEEEeChhcCC-CCCceEEEEEECCHHHHHHHHHHH------------------------HhcC
Confidence 53221 12222 467899999999999 668 8999995 67766553321 1111
Q ss_pred CCCChhHHHHHHHHHHHHHh--------hh---h-hHHHHHHHHHHHHHHHHhccccCCCCcEEE--cC-CCC---CC-C
Q psy16512 328 GTVNYLAIISLKYGFDTMEK--------KR---K-SFTNAFELSQYTYFYFKQLSYSNGQPLVEL--YH-DTD---YG-E 388 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~--------~~---~-~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l--~~-~~~---~~-~ 388 (815)
.+.+.....++..+++.... .. . ..+++++.++++.+.|+++ +++.+ +. +.. .. .
T Consensus 283 ~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~------~g~~~~~~~~~~~~~~~~~~ 356 (427)
T 2hox_A 283 EGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS------DRFSYQELPQSEYCNYFRRM 356 (427)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS------SSEECCCCCSCEEETTTTEE
T ss_pred CCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhC------cCcccccccccccccccccc
Confidence 23444555555555553211 00 1 1267777888888899877 56665 22 210 00 0
Q ss_pred CCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 389 SKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 389 ~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
....+.++++.++. +...+ +.+++.++||.+++|..|.. ..
T Consensus 357 ~p~~g~f~~~~~~~-~~~~~----~~~ll~~~gI~v~pg~~f~~----------------------------------~~ 397 (427)
T 2hox_A 357 RPPSPSYAWVKCEW-EEDKD----CYQTFQNGRINTQNGVGFEA----------------------------------SS 397 (427)
T ss_dssp ECCCCSEEEEEECS-GGGCS----HHHHHHHTTEECEEGGGGTS----------------------------------CT
T ss_pred CCCCceEEEEECCC-cHHHH----HHHHHHHCCEEEcCCCccCC----------------------------------CC
Confidence 01225677777764 22221 44556789999999865431 13
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+++|||++. ++++++.+++.|.+++..
T Consensus 398 ~~~Ris~~~--~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 398 RYVRLSLIK--TQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp TEEEEECSS--CHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 789999984 889999999999997743
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-17 Score=180.94 Aligned_cols=325 Identities=14% Similarity=0.094 Sum_probs=206.6
Q ss_pred hhhhhhhhc---c-c--ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG---A-G--VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~---~-~--~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ . . ..++.+.+++.+++.... +.+... .... ..++++++++++|. +. ++|++|++
T Consensus 64 G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~--~~~~~~-~~~~----~~~l~~~la~~~g~--~~--v~~~~sGs 132 (433)
T 1z7d_A 64 DKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT--ICSRAF-FSVP----LGICERYLTNLLGY--DK--VLMMNTGA 132 (433)
T ss_dssp CCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS--CCCTTS-EEHH----HHHHHHHHHHHHTC--SE--EEEESSHH
T ss_pred CCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC--CccCCc-CCHH----HHHHHHHHHhhcCC--Ce--EEEeCCHH
Confidence 456777544 1 1 156888888887765422 222111 2223 67888999999984 44 99999999
Q ss_pred hhHHHHHhhhc--------cCCC-c-EEEecCCCcc-hhhHHHHhhcc-----------ceEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEYFE--------FNEG-S-FIYLTDNHTS-VLGMRELVKTN-----------QIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~al~--------~~~g-d-vv~~~~~h~s-~~~~~~~~~~~-----------g~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+.+++.++. ..+| + ||+....|+. ...+....... +...+.. .+++.++++++
T Consensus 133 eA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~---~d~~~le~~l~ 209 (433)
T 1z7d_A 133 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY---DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT---TCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC---CCHHHHHHHhC
Confidence 99999988753 1356 5 7777765543 33333332210 1111211 14445544331
Q ss_pred hhhhhcCCCccEEEEecccCCCcccc----ChHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKY----PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~----~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~~~ 263 (815)
.+++++|+++.+++++|.+. ++++|.++|+ ++|+++|+|+++. ++... . +....
T Consensus 210 ------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~~g~g~~g~~~~~~~~~~ 272 (433)
T 1z7d_A 210 ------DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICK-----------KYNVLFVADEVQTGLGRTGKLLCVHHYNV 272 (433)
T ss_dssp ------STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSGGGGGTC
T ss_pred ------CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEecCccCCCcCCcchhhHhcCC
Confidence 35688999988888899876 5788888888 8999999999986 22111 1 11123
Q ss_pred CCcEEEEccccccccCCc---ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTG---LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
.+|++ |++|+++ + | +|++++++++++.+.+... ....+.|..+.+++.+
T Consensus 273 ~~di~--t~sK~l~-~-G~~~~G~v~~~~~~~~~l~~~~~------------------------~~t~~~~~~~~aaa~a 324 (433)
T 1z7d_A 273 KPDVI--LLGKALS-G-GHYPISAVLANDDIMLVIKPGEH------------------------GSTYGGNPLAASICVE 324 (433)
T ss_dssp CCSEE--EECGGGG-T-TSSCCEEEEECHHHHTTCCTTCC------------------------CCTTTTCHHHHHHHHH
T ss_pred CCCEE--EECcccc-C-CCCCeEEEEECHHHHhhhccccc------------------------cccCCCCHHHHHHHHH
Confidence 57876 7789998 4 5 8999999887765543110 0111456677777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+... ...++..++++++.+.|+++. .+.|.+..+ ...++++.+.+.... .+..++.+.|.++
T Consensus 325 al~~~~~~-~~~~~~~~~~~~l~~~L~~l~--~~~~~~~~~--------~~~g~~~~i~~~~~~---~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 325 ALNVLINE-KLCENAEKLGGPFLENLKREL--KDSKIVRDV--------RGKGLLCAIEFKNEL---VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTCTTEEEE--------EEETTEEEEEECTTT---CCHHHHHHHHHHT
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--HhCCCeEEE--------EeeeeEEEEEEccCh---hHHHHHHHHHHHC
Confidence 88877652 223888899999999997751 011333222 123788888886431 1234577888889
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.++++. .+++|+++++..|++|+++++++|++++.+
T Consensus 391 Gv~v~~~~---------------------------------------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 391 GLITRDVH---------------------------------------DKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp TEECCEET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 99987530 268999999999999999999999988653
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=193.70 Aligned_cols=306 Identities=14% Similarity=0.088 Sum_probs=202.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-h--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-A-- 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~-- 181 (815)
+.++++.+|++||++. .+++++|++.|+.+++.++. ++|| |++...+|.|+......++... +++.+.+. .
T Consensus 197 i~eaE~~lA~~fGa~~---a~~v~nGts~An~~ai~al~-~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~~gi~ 272 (715)
T 3n75_A 197 HKEAEQYIARVFNADR---SYMVTNGTSTANKIVGMYSA-PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNAYGIL 272 (715)
T ss_dssp HHHHHHHHHHHHTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCTTCCB
T ss_pred HHHHHHHHHHHhCCCC---ceEECcHHHHHHHHHHHHhC-CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccccccc
Confidence 8899999999999964 36777887899999999998 9999 9999999999987655544333 44433221 1
Q ss_pred --h-----cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 182 --R-----NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 182 --~-----~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
+ +.+.++++|++. ...+.+++++++++ |++|.++|+++|.++|+ .++ +++|+||+.+
T Consensus 273 ~~i~~~~~d~e~Le~~l~~~--~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~-----------~~~--livDEAH~~~ 336 (715)
T 3n75_A 273 GGIPQSEFQHATIAKRVKET--PNATWPVHAVITNS-TYDGLLYNTDFIKKTLD-----------VKS--IHFDSAWVPY 336 (715)
T ss_dssp CCCCGGGGSHHHHHHHHHHS--TTCCSCSEEEEESS-CTTSEEECHHHHHHHCC-----------CSE--EEEECTTCTT
T ss_pred cCcccccCCHHHHHHHHhhC--cCccCceEEEEECC-CCCCccCCHHHHHHHhC-----------cCc--EEEccccccc
Confidence 1 566666655310 00112348999999 99999999999999998 664 7999999865
Q ss_pred C--CC----CCCCCC--CCcEE---EEccccccccCCcceEEEEeccccc-ccCcccccCceEEEEecCCcccccccCcc
Q psy16512 255 S--NM----LDLKQH--QPDFI---SISFYKMFGYPTGLGALIVKQKSAH-VLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 255 ~--~~----~dl~~~--~~D~v---v~S~~K~~g~p~G~G~l~~~~~~~~-~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
. .+ ...-.. ++|++ +.|+||+++++++.|+++++++... .+.. ..
T Consensus 337 ~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~-----------------------~~ 393 (715)
T 3n75_A 337 TNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE-----------------------AY 393 (715)
T ss_dssp GGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHH-----------------------HH
T ss_pred cccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHH-----------------------HH
Confidence 3 11 111111 25765 8999999998888899999876321 1100 01
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHh-hhhhH-HHHHHHHHHHHHHHHhccccCCCCc--EEEcCCCCCCCC---------
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEK-KRKSF-TNAFELSQYTYFYFKQLSYSNGQPL--VELYHDTDYGES--------- 389 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~-~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~--~~l~~~~~~~~~--------- 389 (815)
..+..++++++.++++.++++++.. .+... ++..++++++++.|+++.... ++ ++++.+......
T Consensus 394 ~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (715)
T 3n75_A 394 MMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTES--DGWFFDVWQPDHIDTTECWPLRSDS 471 (715)
T ss_dssp HHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSCCCEESSCSCCCSCSCEECCTTC
T ss_pred HhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhc--ccceeeccCcccccchhhhccCccc
Confidence 2355678999999999999998874 44444 889999999999998872100 01 455544310000
Q ss_pred -------------CcccceEEEEEecC--CCC----ccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHh
Q psy16512 390 -------------KYQGNIVNFNLLHK--DGT----YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHF 450 (815)
Q Consensus 390 -------------~~~~~i~~f~~~~~--~~~----~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~ 450 (815)
...+.-+.+..++. ++. .+.-.++.+.|+++||.+-...
T Consensus 472 ~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---------------------- 529 (715)
T 3n75_A 472 TWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---------------------- 529 (715)
T ss_dssp CTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE----------------------
T ss_pred ccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC----------------------
Confidence 00122234444332 121 2334467777877888764321
Q ss_pred hcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 451 QQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 451 ~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
...|=+-++..+|++++++|+++|.++-.
T Consensus 530 -----------------~~~vl~l~s~g~~~~~~~~L~~aL~~~~~ 558 (715)
T 3n75_A 530 -----------------PYNLLFLFSIGIDKTKALSLLRALTDFKR 558 (715)
T ss_dssp -----------------TTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 14455666666899999999999998643
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-17 Score=185.81 Aligned_cols=343 Identities=10% Similarity=0.027 Sum_probs=212.1
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+.. ..++.+.+++.+.+....+.++ .+ .... ..+++++++++++.++++ |+||+|++
T Consensus 42 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~--~~-~~~~----~~~l~~~la~~~~~~~~~--v~~~~gg~ 112 (433)
T 1zod_A 42 GRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS--EM-LSRP----VVDLATRLANITPPGLDR--ALLLSTGA 112 (433)
T ss_dssp CCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT--TC-CCHH----HHHHHHHHHHHSCTTCCE--EEEESCHH
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCccccc--cc-CCHH----HHHHHHHHHHhCCCCcCE--EEEeCchH
Confidence 34566653321 2368888888877754221111 11 1122 678888999999987765 99999999
Q ss_pred hhHHHHHhhhcc-CCCc-EEEecCCCc-chhhHHHHhh----------ccc--eEEcCc------h------hhhcchhh
Q psy16512 135 SAIKTVSEYFEF-NEGS-FIYLTDNHT-SVLGMRELVK----------TNQ--IYSFSV------D------DARNMLNE 187 (815)
Q Consensus 135 ~al~~~~~al~~-~~gd-vv~~~~~h~-s~~~~~~~~~----------~~g--~v~~~~------~------~~~~~~~~ 187 (815)
+|+..++.++.. ..++ ||+....|+ +......... ..+ .++++. + +..+++.+
T Consensus 113 ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l 192 (433)
T 1zod_A 113 ESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYA 192 (433)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHH
Confidence 999999886531 2344 777776544 3333222210 012 232221 0 11345555
Q ss_pred hhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--
Q psy16512 188 FKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L-- 258 (815)
Q Consensus 188 ~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~-- 258 (815)
+++++ +...+++++|+++.++|+||.+.+ +++|.++|+ ++|+++|+|+++. ++... .
T Consensus 193 e~~l~---~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~~~g~~g~~~~~ 258 (433)
T 1zod_A 193 FDLID---RQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE-----------ARGMLLILDEAQTGVGRTGTMFAC 258 (433)
T ss_dssp HHHHH---HHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTH
T ss_pred HHHHH---hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCcCchHhHH
Confidence 55442 111145778888777789998777 888888888 8999999999987 44221 1
Q ss_pred CCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 259 DLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 259 dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
+.....+|++ |++|.|++.-.+|++++++++++.+.+.... +....+.|..+..++
T Consensus 259 ~~~~~~~di~--s~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~----------------------~~~t~~~~~~~~~a~ 314 (433)
T 1zod_A 259 QRDGVTPDIL--TLSKTLGAGLPLAAIVTSAAIEERAHELGYL----------------------FYTTHVSDPLPAAVG 314 (433)
T ss_dssp HHHTCCCSEE--EECHHHHTTSSCEEEEECHHHHHHHHHTTCC----------------------CCCTTTTCHHHHHHH
T ss_pred hhcCCCCCEE--EecccccCCCCeeEEEEhHHHHHhhccCCCC----------------------CCCCCCcCHHHHHHH
Confidence 1112346764 7789998322389999998876655321000 001124467777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CC---ccCHHHHH
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GT---YYGYSEVQ 414 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~---~~~~~~v~ 414 (815)
.++++.+... ...++.+++++++.+.|+++.. ..|.+..+. ..+.++.+.+.... .. ......+.
T Consensus 315 ~aal~~~~~~-~~~~~~~~~~~~l~~~l~~l~~--~~~~~~~~~--------~~g~~~~i~~~~~~~~~~~~~~~~~~~~ 383 (433)
T 1zod_A 315 LRVLDVVQRD-GLVARANVMGDRLRRGLLDLME--RFDCIGDVR--------GRGLLLGVEIVKDRRTKEPADGLGAKIT 383 (433)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEEEEETTTTEECTTHHHHHH
T ss_pred HHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHH--hCCCeEEEE--------EEEEEEEEEEecCccccCCChHHHHHHH
Confidence 7888877652 2238888889999888876510 003333332 23678888876321 00 01134577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.+++|..+. ..+++|+++++..+++++++++++|+++
T Consensus 384 ~~l~~~Gv~v~~~~~~~-----------------------------------~~~~lRi~~~~~~t~~~i~~~l~~l~~~ 428 (433)
T 1zod_A 384 RECMNLGLSMNIVQLPG-----------------------------------MGGVFRIAPPLTVSEDEIDLGLSLLGQA 428 (433)
T ss_dssp HHHHHTTEECCEECCTT-----------------------------------SCCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEeccCCCC-----------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHH
Confidence 77788999998763210 0378999999899999999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 429 l~ 430 (433)
T 1zod_A 429 IE 430 (433)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=185.18 Aligned_cols=335 Identities=12% Similarity=0.017 Sum_probs=214.8
Q ss_pred hhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 63 CYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
.|+|..+. +..++.+.+++.+++......... ...... ..+++++++++++.+.+. |+|++|+++|
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~L~e~la~~~~~~~~~--v~~~~sGseA 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFG--GLTHEP----AARLAKLLVDITPAGLDT--VFFSDSGSVS 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSS--SEECHH----HHHHHHHHHHHSSTTEEE--EEEESSHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCcCE--EEEeCcHHHH
Confidence 67776543 234688888888777642111111 112233 678999999999876665 9999999999
Q ss_pred HHHHHhhhccC------CCc--EEEecCCCcc-hhhHHHHhhc------------cc--eEEcCch--hhhcchhhhhhh
Q psy16512 137 IKTVSEYFEFN------EGS--FIYLTDNHTS-VLGMRELVKT------------NQ--IYSFSVD--DARNMLNEFKES 191 (815)
Q Consensus 137 l~~~~~al~~~------~gd--vv~~~~~h~s-~~~~~~~~~~------------~g--~v~~~~~--~~~~~~~~~~~l 191 (815)
+..++..+..- +|+ +|.....|.. .......... .+ .++.... ...+++.+++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 99998887521 554 6666655433 3222222110 01 2222111 113455555544
Q ss_pred hhhhhhcCCCccEEEEec-ccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCC
Q psy16512 192 QENVENMRHSNSLFVYPA-ESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLK 261 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~-~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~ 261 (815)
+ ...+++++|+++. ++|++|.+.| +++|.++|+ ++|+++|+|+++. +|... . +..
T Consensus 228 ~----~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~g~gr~G~~~a~~~~ 292 (457)
T 3tfu_A 228 A----QHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICR-----------RYEVLLIFDEIATGFGRTGALFAADHA 292 (457)
T ss_dssp H----HHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred H----hCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEcCccCCccccchhHhHhc
Confidence 3 1124688999999 9999999987 788888998 8999999999975 33211 1 111
Q ss_pred CCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
...+|++ |++|.+++. ..+|++++++++++.+.....+.. ......+.|.++.+++.+
T Consensus 293 ~~~pdii--t~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~-------------------~~~~t~~~n~~a~aaa~a 351 (457)
T 3tfu_A 293 GVSPDIM--CVGKALTGGYLSLAATLCTADVAHTISAGAAGAL-------------------MHGPTFMANPLACAVSVA 351 (457)
T ss_dssp TCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSC-------------------CCCCTTTTCHHHHHHHHH
T ss_pred CCCceEE--EEChhhhCCCcceEEEEEcHHHHHHhhccCCCce-------------------eEecCCCcCHHHHHHHHH
Confidence 2357877 778988843 148999999988765521000000 001112456777777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
+++.+... ...++.+++.+++.+.|.++. ..|.+..+. ..+.++.+.+.... +..++.+.|.++
T Consensus 352 aL~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~v~~vr--------~~G~~~~i~l~~~~----~~~~~~~~l~~~ 415 (457)
T 3tfu_A 352 SVELLLGQ-DWRTRITELAAGLTAGLDTAR---ALPAVTDVR--------VCGAIGVIECDRPV----DLAVATPAALDR 415 (457)
T ss_dssp HHHHHHTS-CHHHHHHHHHHHHHHHHGGGG---GSTTEEEEE--------ECSSCEEEEESSCC----CHHHHHHHHHHT
T ss_pred HHHHHhhh-HHHHHHHHHHHHHHHHHHHHh---cCCCeeeee--------cCCeEEEEEECCcc----cHHHHHHHHHHC
Confidence 88876542 223888899999999998762 114444332 23678888876431 234688888888
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||.+++. .+++|+++++..|++|+++++++|++++.+
T Consensus 416 Gv~v~~~----------------------------------------~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 416 GVWLRPF----------------------------------------RNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp TEECCCB----------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998742 257999999888999999999999998764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=188.76 Aligned_cols=333 Identities=13% Similarity=0.130 Sum_probs=207.0
Q ss_pred hhhhhhhhcc------cccchhhH-H-HHHH---HHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-CCCCceeEE
Q psy16512 61 DICYLDYTGA------GVYSQSQM-N-QTIE---QLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-TDSDHYSVI 128 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~-~-al~~---~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-~~~~~~~iv 128 (815)
+..|+|..+. +..++.+. + ++.+ ++.......+ .. .... ..++++.++++++ .+.++ |+
T Consensus 53 g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~--~~-~~~~----~~~la~~la~~~~~~~~~~--v~ 123 (449)
T 2cjg_A 53 GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNS--DV-YSVA----MARFVETFARVLGDPALPH--LF 123 (449)
T ss_dssp CCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTT--TC-CCHH----HHHHHHHHHHHHCCTTCCE--EE
T ss_pred CcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCc--cc-CCHH----HHHHHHHHHHhcCCCCCCE--EE
Confidence 4567775322 22467888 7 8877 5543211111 11 1222 6788889999997 44554 99
Q ss_pred ecCCchhhHHHHHhhhc-c-C-----------CCc-EEEecCCCcc-hhhHHHHhhc-------c-----c--eEEcCc-
Q psy16512 129 FTSGATSAIKTVSEYFE-F-N-----------EGS-FIYLTDNHTS-VLGMRELVKT-------N-----Q--IYSFSV- 178 (815)
Q Consensus 129 ~t~g~t~al~~~~~al~-~-~-----------~gd-vv~~~~~h~s-~~~~~~~~~~-------~-----g--~v~~~~- 178 (815)
|++|+++|+..++..+. + . +|+ ||+....|+. ...+...... . + .++.+.
T Consensus 124 ~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 203 (449)
T 2cjg_A 124 FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRP 203 (449)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCT
T ss_pred EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCc
Confidence 99999999999887542 1 1 266 7877765544 3332222211 1 1 222222
Q ss_pred --hh-------hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEE
Q psy16512 179 --DD-------ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFV 245 (815)
Q Consensus 179 --~~-------~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~v 245 (815)
+. ..+++.++++++ ...+++++|+++.++|++|.+.+ +++|.++|+ ++|+++
T Consensus 204 ~~~~~~~~~~~~~~~~~le~~i~----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~ll 268 (449)
T 2cjg_A 204 GLDEPAMAALEAEALRQARAAFE----TRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD-----------EFDALL 268 (449)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH----HSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH-----------HTTCEE
T ss_pred hhhccccchhhHHHHHHHHHHHH----hcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH-----------HCCcEE
Confidence 10 123333444332 11357899999988999998777 778888888 899999
Q ss_pred EEecccc-cCCCC--CC--CCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccC
Q psy16512 246 LLDAATY-CGSNM--LD--LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDG 320 (815)
Q Consensus 246 ivD~a~~-~g~~~--~d--l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~ 320 (815)
|+|++|. +|... .. .....+|++ |++|+| | +|++++++++++.+.+.+.+...
T Consensus 269 i~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~--iG~~~~~~~~~~~l~~~~~~~~~---------------- 326 (449)
T 2cjg_A 269 IFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q--VCGVMAGRRVDEVADNVFAVPSR---------------- 326 (449)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S--SEEEEECGGGGGSTTCTTTSTTS----------------
T ss_pred EEeccccCCCccCcceeecccCCCceEE--EecCcc--c--EEEEEECHHHhhhhhhcccCCcc----------------
Confidence 9999987 43221 11 112357876 567988 4 79999998887665432211100
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEE
Q psy16512 321 LFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFN 399 (815)
Q Consensus 321 ~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~ 399 (815)
.....+.|..+..++.++++.+... ...++.+++++++.+.|+++.. +.|. +..+. ..+.++.+.
T Consensus 327 ---~~~t~~~n~~~~~aa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~--------~~g~~~~~~ 392 (449)
T 2cjg_A 327 ---LNSTWGGNLTDMVRARRILEVIEAE-GLFERAVQHGKYLRARLDELAA--DFPAVVLDPR--------GRGLMCAFS 392 (449)
T ss_dssp ---SCCSSSSCHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHH--HSTTTSEEEE--------EETTEEEEE
T ss_pred ---cccCCCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHh--hCCCceeeEe--------eccEEEEEE
Confidence 0112245677788888888877652 2238888999999999876510 0022 32221 236788887
Q ss_pred EecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCC
Q psy16512 400 LLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHAS 479 (815)
Q Consensus 400 ~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~ 479 (815)
+.... ...++.+.|.++||.++++. .+++|+++++.+
T Consensus 393 ~~~~~----~~~~~~~~l~~~Gv~v~~~g---------------------------------------~~~iRi~~~~~~ 429 (449)
T 2cjg_A 393 LPTTA----DRDELIRQLWQRAVIVLPAG---------------------------------------ADTVRFRPPLTV 429 (449)
T ss_dssp CSSHH----HHHHHHHHHHHTTEECEEET---------------------------------------TTEEEECCCTTC
T ss_pred ECChH----HHHHHHHHHHHCCeEEecCC---------------------------------------CCEEEEECCCCC
Confidence 65310 12347777778999987531 268999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy16512 480 NWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 480 t~edi~~lv~~L~~~~~ 496 (815)
|++++++++++|++++.
T Consensus 430 t~e~i~~~l~~l~~~l~ 446 (449)
T 2cjg_A 430 STAEIDAAIAAVRSALP 446 (449)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=185.40 Aligned_cols=285 Identities=14% Similarity=0.064 Sum_probs=182.1
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-v 151 (815)
.++++++.+........++.+.+...+. ..+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| +
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~all-~~GD~V 104 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGYDDE---GRDTLERVYATVFKTEAA---LVRPQIISGTHAISTVLFGIL-RPDDEL 104 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTSCSHHHHHHHHHHHHC-CTTCEE
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCCChh---HHHHHHHHHHHHhCCCcE---EEECCCccHHHHHHHHHHHhc-CCCCEE
Confidence 4566666554322122233333322222 267889999999998652 554 7888999999999997 9999 7
Q ss_pred EEec-CCCcchhhHH-------HHhhccc--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCCc
Q psy16512 152 IYLT-DNHTSVLGMR-------ELVKTNQ--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFSG 215 (815)
Q Consensus 152 v~~~-~~h~s~~~~~-------~~~~~~g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~tG 215 (815)
|++. ..|..+.... ..+...| + ++.++++..+++.+++++ +++|++|++++ ++||||
T Consensus 105 l~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai-------~~~tklV~i~~s~g~p~nptg 177 (409)
T 3jzl_A 105 LYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKM-------TPKTKMIGIQRSRGYADRPSF 177 (409)
T ss_dssp EECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHC-------CTTEEEEEEECSCTTSSSCCC
T ss_pred EEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhc-------cCCCeEEEEECCCCCCCCCcC
Confidence 7776 6777665443 3344455 3 344445557777776644 46899999999 999999
Q ss_pred cccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCC--cceEEEEeccc
Q psy16512 216 TKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPT--GLGALIVKQKS 291 (815)
Q Consensus 216 ~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~--G~G~l~~~~~~ 291 (815)
.+.|+++|.++|+ + +|+++++|++++.+....+....++|+++.|+||++|++. ..|+++.++++
T Consensus 178 ~v~~l~~I~~la~-----------~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~l 246 (409)
T 3jzl_A 178 TIEKIKEMIVFVK-----------NINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEAL 246 (409)
T ss_dssp CHHHHHHHHHHHH-----------HHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHH
T ss_pred ccccHHHHHHHHH-----------hhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHH
Confidence 9999999999999 7 9999999999987763333335678999999999999432 14899999888
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~ 371 (815)
++.++......+. ....|.. .....++..++..+. ..+++..+.+.++.+.|+++
T Consensus 247 i~~l~~~~~~~~~-------------------g~~~g~~-~~~~~~~l~gl~~~~---~r~~~~~~~a~~la~~L~~~-- 301 (409)
T 3jzl_A 247 VDLCGYRLTTPGI-------------------GREAGAS-LYSLLEMYQGFFLAP---HVTAQAIKGARFTAAMLAEF-- 301 (409)
T ss_dssp HHHHHHHHSCTTT-------------------GGGCCCC-TTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHhccccc-------------------ccccccc-HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhC--
Confidence 7766432110000 0111111 111223334443332 23477788899999999988
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCC
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKK 421 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~g 421 (815)
+++++.... ..++.-+++|.+.+. +. ...+.+.|....
T Consensus 302 -----g~~v~p~~~---~~~~~~i~~i~l~~~--~~--~~~~~~~L~~~~ 339 (409)
T 3jzl_A 302 -----GVEADPVWD---APRTDLIQSVSFHNK--EK--MVAFAQAIQAAS 339 (409)
T ss_dssp -----TCEEESCTT---SCCSSSCCEEECSCH--HH--HHHHHHHHHHTS
T ss_pred -----CCcccCCCC---CCCccEEEEEEeCCH--HH--HHHHHHHHHhcC
Confidence 456643221 123344888887532 11 123556666554
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-16 Score=176.81 Aligned_cols=347 Identities=11% Similarity=0.071 Sum_probs=210.9
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+ ......... ..+++++++++++.+.+ |+||+|++
T Consensus 48 g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~----~~~la~~l~~~~~~~~~---v~~~~ggs 117 (452)
T 3n5m_A 48 GKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY---FPMSQSHEP----AIKLAEKLNEWLGGEYV---IFFSNSGS 117 (452)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC---CCTTSEEHH----HHHHHHHHHHHHTSCEE---EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC---cccccCCHH----HHHHHHHHHHhCCCCce---EEEeCchH
Confidence 3456665543 22368888888887754222 111122233 67899999999986543 99999999
Q ss_pred hhHHHHHhhhcc----C---CCc-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchh------------
Q psy16512 135 SAIKTVSEYFEF----N---EGS-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDD------------ 180 (815)
Q Consensus 135 ~al~~~~~al~~----~---~gd-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~------------ 180 (815)
+|+..++..+.. . +++ ||+....|+........+... + .++.....
T Consensus 118 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (452)
T 3n5m_A 118 EANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYD 197 (452)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHH
Confidence 999999988751 2 455 777776655433222211111 0 11110000
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
..+++.++++++ ....+++++|+++.+ +| +|.+.| +++|.++|+ +||+++|+|+++. +|
T Consensus 198 ~~~~~~le~~l~---~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g 262 (452)
T 3n5m_A 198 VECVKEVDRVMT---WELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQ-----------KHGALLISDEVICGFG 262 (452)
T ss_dssp CHHHHHHHHHHH---HHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHH---hcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHH-----------HcCCEEEEecchhCCC
Confidence 001344444332 111245788899888 89 999887 888889998 8999999999976 33
Q ss_pred CC--C--CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SN--M--LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~--~--~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
.. . .+.....+|++ +++|.+++. -.+|++++++++++.+.+....... ......+
T Consensus 263 ~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~------------------~~~~t~~ 322 (452)
T 3n5m_A 263 RTGKAFGFMNYDVKPDII--TMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFF------------------RHINTFG 322 (452)
T ss_dssp TTSSSSGGGGTTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSC------------------CCCCSST
T ss_pred cccccchhhhcCCCCCEE--eecccccCCCcceEEEEECHHHHHHHhhccCCCCc------------------cccCCCC
Confidence 21 1 12222346766 467988843 3479999999887766321000000 0011224
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC--CCc
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD--GTY 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~--~~~ 407 (815)
.|.++++++.++++.+... ...++.+++.+++.+.|.++. ...|.+..+.+ .+.++.+.+.... ...
T Consensus 323 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~--~~~~~~~~~~~--------~g~~~~i~~~~~~~~~~~ 391 (452)
T 3n5m_A 323 GNPAACALALKNLEIIENE-NLIERSAQMGSLLLEQLKEEI--GEHPLVGDIRG--------KGLLVGIELVNDKETKEP 391 (452)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTCTTEEEEEE--------SSSCEEEEEEEETTTTEE
T ss_pred CCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--hcCCCeEEEEE--------EEEEEEEEEecCCcccCC
Confidence 5667777777888876542 223777888888888776641 01144444322 3667777764321 111
Q ss_pred cC---HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YG---YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~---~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
++ ...+.+.|.++||.++++..+.++ ..+++||++++..|++++
T Consensus 392 ~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~---------------------------------~~~~iRi~~~~~~t~e~i 438 (452)
T 3n5m_A 392 IDNDKIASVVNACKEKGLIIGRNGMTTAG---------------------------------YNNILTLAPPLVISSEEI 438 (452)
T ss_dssp CCHHHHHHHHHHHHHTTEECEECTTSSTT---------------------------------CCCEEEECCCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCcEEeecCcccCC---------------------------------CCCEEEEECCCCCCHHHH
Confidence 11 134777788899999886543211 137899999999999999
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
++++++|++++.
T Consensus 439 ~~~l~~l~~~l~ 450 (452)
T 3n5m_A 439 AFVIGTLKTAME 450 (452)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-17 Score=181.52 Aligned_cols=332 Identities=11% Similarity=0.058 Sum_probs=204.4
Q ss_pred chhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+.. ..++.+.+++.+++.... +..|+ .. ..+++++++++++ +++. ++|++|
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~------~~----~~~l~~~la~~~~-~~~~--v~~~~s 119 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPT------AL----EVKFAKMLKEAMP-ALDK--VRFVNS 119 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCC------HH----HHHHHHHHHHHCT-TCSE--EEEESS
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCC------HH----HHHHHHHHHHhCC-CCCE--EEEeCc
Confidence 345677776543 247888888888775421 11221 22 6678889999987 4555 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-------------------eEEcCchhhhcchhhhhhh
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-------------------IYSFSVDDARNMLNEFKES 191 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-------------------~v~~~~~~~~~~~~~~~~l 191 (815)
+|+|+..++..+.. .+++ +|+....|.........+...+ .+.+.. .+++.+++++
T Consensus 120 Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l 196 (434)
T 3l44_A 120 GTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPF---NNVETLKEAL 196 (434)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECT---TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCc---ccHHHHHHHH
Confidence 99999999987652 2455 7777766544322111111111 011110 1444555443
Q ss_pred hhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc---CCCC-CCCCCC
Q psy16512 192 QENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC---GSNM-LDLKQH 263 (815)
Q Consensus 192 ~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~---g~~~-~dl~~~ 263 (815)
+ ...+++++|+++.++|++|.+.| +++|.++|+ +||+++|+|+++.. |... .+....
T Consensus 197 ~----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~illI~DEv~~g~~~g~~~~~~~~~~ 261 (434)
T 3l44_A 197 D----KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVH-----------EAGALVIYDEVITAFRFMYGGAQDLLGV 261 (434)
T ss_dssp H----HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------TTTCEEEEECTTTTTTSSSSCHHHHHTC
T ss_pred H----hCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccceeccccHHHHHcCC
Confidence 2 11245788999888889999988 889999999 99999999999862 1100 011123
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|.++++-.+|++++++++++.+.+.-. . ......+.|..+.+++.++++
T Consensus 262 ~~di~--t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~---~------------------~~~~t~~~~~~a~aaa~aal~ 318 (434)
T 3l44_A 262 TPDLT--ALGKVIGGGLPIGAYGGKKEIMEQVAPLGP---A------------------YQAGTMAGNPASMASGIACLE 318 (434)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTSS---B------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred CCCee--ehhhhhcCCcCeeeEEEcHHHHHhhccCCC---c------------------ccCCCCCcCHHHHHHHHHHHH
Confidence 46754 677988843348999999888766543100 0 011123556777777777887
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~ 414 (815)
.+.. ....++.+++++++.+.|.++.... +.+... ...+.++.+.+...... ......+.
T Consensus 319 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (434)
T 3l44_A 319 VLQQ-EGLYEKLDELGATLEKGILEQAAKH--NIDITL--------NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFF 387 (434)
T ss_dssp HHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCEEE--------EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHH
T ss_pred HHHc-ccHHHHHHHHHHHHHHHHHHHHHhC--CCCEEE--------EeeccEEEEEEecCcccchhhccccCHHHHHHHH
Confidence 7654 2223778888888888887641000 111111 12377888887532210 00123467
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++. .+.+|+++ ..|++|+++++++|+++
T Consensus 388 ~~l~~~Gv~v~~~~---------------------------------------~~~~rl~~--~~t~e~i~~~l~~l~~~ 426 (434)
T 3l44_A 388 KLMLQEGVNLAPSK---------------------------------------YEAWFLTT--EHTKEDIEYTIEAVGRA 426 (434)
T ss_dssp HHHHHTTEECCSST---------------------------------------TCCEECCT--TCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeecC---------------------------------------CCcEEEec--ccCHHHHHHHHHHHHHH
Confidence 77888999987652 14588864 57999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
+.+
T Consensus 427 l~~ 429 (434)
T 3l44_A 427 FAA 429 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=185.54 Aligned_cols=271 Identities=13% Similarity=0.002 Sum_probs=175.2
Q ss_pred hhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-E
Q psy16512 75 QSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-F 151 (815)
Q Consensus 75 ~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-v 151 (815)
+++++++.+........++.+.+...+. ..+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| |
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~gy~y~~~---~~~~Le~~lA~l~g~e~a---lv~p~~~sGt~Ai~~al~all-~pGD~V 118 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSGYGYGDI---GRDSLDAVYARVFNTESA---LVRPHFVNGTHALGAALFGNL-RPGNTM 118 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCTTCH---HHHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHHC-CTTCEE
T ss_pred HHHHHHHHHhchhHHhcCCCCCCCCCHH---HHHHHHHHHHHHhCCcce---EEeCCCccHHHHHHHHHHHHh-CCCCEE
Confidence 4566666553222122223333322222 267888999999998653 564 7888999999999998 9999 7
Q ss_pred EEec-CCCcchhhHH--------HHhhccc--e--EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCC
Q psy16512 152 IYLT-DNHTSVLGMR--------ELVKTNQ--I--YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFS 214 (815)
Q Consensus 152 v~~~-~~h~s~~~~~--------~~~~~~g--~--v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~t 214 (815)
|++. ..|+...... ..+...| + ++.+.++..+++.++++++ . .++|++|++++ ++||+
T Consensus 119 l~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~----~-~~~tklV~i~~s~~~p~npt 193 (427)
T 3i16_A 119 LSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLK----E-DESITLVHIQRSTGYGWRRA 193 (427)
T ss_dssp EESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHH----T-CTTEEEEEEECSCCSSSSCC
T ss_pred EEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhh----C-CCCCEEEEEEcCCCCCCCCc
Confidence 7776 6777665444 3444455 3 3444555677777776442 0 15799999999 99999
Q ss_pred ccccChHHHHHHhhccccccccccCC--CCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccC--CcceEEEEecc
Q psy16512 215 GTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP--TGLGALIVKQK 290 (815)
Q Consensus 215 G~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p--~G~G~l~~~~~ 290 (815)
|.+.|+++|.++|+ + +|+++++|++++.+....+....++|+++.|+||++|++ ...|+++.+++
T Consensus 194 g~i~dl~~i~~la~-----------~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 194 LLIEDIKSIVDCVK-----------NIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCHHHHHHHHHHHH-----------HHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccHHHHHHHHHHHH-----------HhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHH
Confidence 99999999999999 7 999999999998776323333457899999999999942 12499999988
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~ 370 (815)
+++.++......+. .... .+.+.....+..++..+ ...+++..+.+.++.+.|+++
T Consensus 263 li~~l~~~~~~~~~-------------------g~~~-~~~~~~a~~~l~gl~~~---~~r~~~~~~~a~~la~~L~~~- 318 (427)
T 3i16_A 263 CIEKTSYRLTVPGI-------------------GGEC-GSTFGVVRSMYQGLFLA---PHISMEALKGAILCSRIMELA- 318 (427)
T ss_dssp HHHHHHHHHSCTTT-------------------GGGC-CCCTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhcccCcc-------------------CccC-CccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhC-
Confidence 87766432110000 0000 11111122233344333 223477888889999999988
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
+++++.... ...+.-+++|.+.
T Consensus 319 ------g~~V~p~~~---~~~~~~i~~i~l~ 340 (427)
T 3i16_A 319 ------GFEVMPKYD---EKRSDIIQSIKFN 340 (427)
T ss_dssp ------TCEEESCTT---SCCSSSCEEEECS
T ss_pred ------CCeecCCCC---CCCccEEEEEEEC
Confidence 446643211 1223348888885
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-16 Score=175.90 Aligned_cols=348 Identities=12% Similarity=0.019 Sum_probs=207.0
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++......... ....... ..++.++++++++.+.+. |+||+|++
T Consensus 50 G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~-~~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~gGs 122 (460)
T 3gju_A 50 GRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY-VGHGTEA----SITLAKMIIDRAPKGMSR--VYFGLSGS 122 (460)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCC-TTCCCHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccc-cccCCHH----HHHHHHHHHhhCCCCcCE--EEEeCchH
Confidence 3456665433 233688888887777643211111 1111223 678889999998776665 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcchh-hHHHHhhc---------c--c--eEEcCchh-----hh-----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTSVL-GMRELVKT---------N--Q--IYSFSVDD-----AR----- 182 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s~~-~~~~~~~~---------~--g--~v~~~~~~-----~~----- 182 (815)
+|+..++.++.. .+++ ||+....|+... ........ . + .++..... ..
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 999999988752 1234 777666654433 22221110 0 1 22211100 01
Q ss_pred ---cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cC
Q psy16512 183 ---NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CG 254 (815)
Q Consensus 183 ---~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g 254 (815)
+++.++++++ +...+++++|+++.++|++|.+.+ +++|.++|+ +||+++|+|+++. +|
T Consensus 203 ~~~~~~~le~~i~---~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g 268 (460)
T 3gju_A 203 SQHCADKLEEMIL---AEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLK-----------KYDVLLVADEVVTGFG 268 (460)
T ss_dssp HHHHHHHHHHHHH---HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTT
T ss_pred HHHHHHHHHHHHH---hcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCC
Confidence 1344444332 111245789999999999999776 788888898 8999999999976 43
Q ss_pred CCC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
... . +.....+|+++ ++|.+++. -.+|++++++++++.+......... .......+
T Consensus 269 r~g~~~~~~~~~~~pdi~t--~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~-----------------~~~~~t~~ 329 (460)
T 3gju_A 269 RLGTMFGSDHYGIKPDLIT--IAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS-----------------LGHGWTYS 329 (460)
T ss_dssp TTSSSCHHHHHTCCCSEEE--ECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS-----------------CSCCCTTT
T ss_pred cccccchHhhcCCCCCeee--eehhhcCCCCCeEEEEECHHHHHHHhcccccccc-----------------cccCCCCC
Confidence 211 1 11123467764 66988842 2379999999887665211000000 00011224
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC--c
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT--Y 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~--~ 407 (815)
.|.++.+++.++++.+... ...++.+++.+++++.|.+.. ...|.+..+. ..+.++.+.+...... .
T Consensus 330 ~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~~l--~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~ 398 (460)
T 3gju_A 330 AHPICVAAGVANLELIDEM-DLVTNAGETGAYFRAELAKAV--GGHKNVGEVR--------GDGMLAAVEFVADKDDRVF 398 (460)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHH--TTSTTEEEEE--------EETTEEEEEECSBTTTTBC
T ss_pred CCHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHH--hcCCCeEEEe--------eeeEEEEEEEccCcccccc
Confidence 5667777777888876542 122566666666666663320 0114454442 2367888877642211 0
Q ss_pred c-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 Y-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
+ ....+.+.|.++||.++++. ..+++||++++..|++
T Consensus 399 ~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------------------~~~~iRi~~~~~~t~e 440 (460)
T 3gju_A 399 FDASQKIGPQVATALAASGVIGRAMP--------------------------------------QGDILGFAPPLCLTRE 440 (460)
T ss_dssp CCGGGCHHHHHHHHHHHTTEECEECS--------------------------------------SSCEEEECCCTTCCHH
T ss_pred ccchHHHHHHHHHHHHHCCeEEecCC--------------------------------------CCCEEEEECCCCCCHH
Confidence 0 02356777888999987642 0378999999889999
Q ss_pred HHHHHHHHHHHHHhh
Q psy16512 483 DVKYFLSFLNQYFLQ 497 (815)
Q Consensus 483 di~~lv~~L~~~~~~ 497 (815)
++++++++|++++.+
T Consensus 441 ~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 441 QADIVVSKTADAVKS 455 (460)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=183.21 Aligned_cols=283 Identities=13% Similarity=0.066 Sum_probs=176.3
Q ss_pred HHHHHHHHHhHc-CCC-----CCceeE--EecCCchhhHHHH---HhhhccCCCc-EEEecCCCcchhhHHHHhhccc-e
Q psy16512 107 IDQMRTKILQYF-NTD-----SDHYSV--IFTSGATSAIKTV---SEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-I 173 (815)
Q Consensus 107 ~~~~r~~la~~~-g~~-----~~~~~i--v~t~g~t~al~~~---~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~ 173 (815)
..++|+.+++++ |.. +++ | ..|.++++|+.++ +.++. ++|| |++..+.|+++....+..+... .
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~~--i~~~~~~~g~ga~~~~~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 157 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDGR--IASCQTLGGTGALRIGGDLLNRFV-ANCNRIYGPDVGYPNHESIFAKAGMELTP 157 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTTC--EEEEEESHHHHHHHHHHHHGGGTS-SSCCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHcCCCchhhccCc--eeeeecccchHHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHcCCeEEE
Confidence 578999999976 665 455 6 4488999998765 44454 7888 8888888887766555443332 4
Q ss_pred EEcC--chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH---HHHHhhccccccccccCCCCeEEEEe
Q psy16512 174 YSFS--VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW---CNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 174 v~~~--~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~---I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
+++. .+..++++.++++++ ...++++++++++++||||.+++.++ |.++|+ ++|+++|+|
T Consensus 158 ~~~~~~~~~~~d~~~l~~~l~----~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~-----------~~~~~li~D 222 (409)
T 4eu1_A 158 YSYYDPATKGLNLAGMLECLD----KAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIK-----------RRNHIPFVD 222 (409)
T ss_dssp ECCEETTTTEECHHHHHHHHH----HSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH-----------HTTCEEEEE
T ss_pred EEeecCcCCcCcHHHHHHHHH----hCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHH-----------hCCcEEEEe
Confidence 4442 234567777776543 11235678888999999999999777 555566 899999999
Q ss_pred cccccCCC-C-----C---CC-CCCCCcEEEEccccccccCCc--ceEE--EEec-c----cccccCcccccCceEEEEe
Q psy16512 249 AATYCGSN-M-----L---DL-KQHQPDFISISFYKMFGYPTG--LGAL--IVKQ-K----SAHVLNKTFYGGGTVKISM 309 (815)
Q Consensus 249 ~a~~~g~~-~-----~---dl-~~~~~D~vv~S~~K~~g~p~G--~G~l--~~~~-~----~~~~l~~~~~g~~~~~~~~ 309 (815)
+++..... . . .+ ......+++.|++|.|| ++| +||+ ++.+ + +.+.++...
T Consensus 223 e~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g-~~G~riG~~~~v~~~~~~~~~l~~~~~~~~---------- 291 (409)
T 4eu1_A 223 MAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFG-LYGHRCGALHISTASAEEAKRLVSQLALLI---------- 291 (409)
T ss_dssp ESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSS-CGGGCCEEEEEECSSHHHHHHHHHHHHHHH----------
T ss_pred ccccccccCCcccchHHHHHHHhhCCcEEEEecCccccc-CccCCceEEEEEeCCHHHHHHHHHHHHHHH----------
Confidence 99664321 1 0 01 11234478889999999 557 7997 5544 4 333221110
Q ss_pred cCCcccccccCccccccCCCCChhHHHHHHHHHHHH-------HhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEc
Q psy16512 310 ANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-------EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELY 381 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-------~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~ 381 (815)
+....+++.....++..+++.. .......++.+++++++.+.|+++. .|+ +++.
T Consensus 292 --------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~ 353 (409)
T 4eu1_A 292 --------------RPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG----SVHDWSHI 353 (409)
T ss_dssp --------------HHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----CCSCCHHH
T ss_pred --------------hhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCccee
Confidence 0111244556666665666531 1121122788888999999998761 011 4444
Q ss_pred CCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 382 HDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 382 ~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
.+. ++++.+ .+. +...+.++++++||.+.+|
T Consensus 354 ~~~--------~~~~~~--~~~-----~~~~~~~ll~~~gv~v~p~---------------------------------- 384 (409)
T 4eu1_A 354 ERQ--------VGMMAY--TGL-----TREQVELLRSEYHIYMTLN---------------------------------- 384 (409)
T ss_dssp HHS--------CSSEEE--CCC-----CHHHHHHHHHHHCEECCTT----------------------------------
T ss_pred cCC--------ceEEEE--eCC-----CHHHHHHHHHcCCEEEcCC----------------------------------
Confidence 332 344333 121 1223556667889998642
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|++++.. +++++++++++|++++
T Consensus 385 ---------~Ri~~~~~-~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ---------GRAAVSGL-NSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ---------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred ---------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence 37888765 4567999999999865
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-16 Score=175.51 Aligned_cols=338 Identities=12% Similarity=0.046 Sum_probs=209.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+.++.. ...... ..++.++++++++.+.+. |+||+|++
T Consensus 49 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~ggs 121 (459)
T 4a6r_A 49 GNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFF-KTTHPA----VVELSSLLAEVTPAGFDR--VFYTNSGS 121 (459)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTS-SSCCHH----HHHHHHHHHHHSCTTCCE--EEEESSHH
T ss_pred CCEEEECCCchhcccCCCCCHHHHHHHHHHHHhcccccccc-ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCchH
Confidence 3456776543 2236888888888776432111111 112233 678899999999877765 99999999
Q ss_pred hhHHHHHhhhcc-------CCCc-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchhh----hc-----
Q psy16512 135 SAIKTVSEYFEF-------NEGS-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDDA----RN----- 183 (815)
Q Consensus 135 ~al~~~~~al~~-------~~gd-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~~----~~----- 183 (815)
+|+..++..+.. .+++ ||+....|+........+... + .+++..... .+
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~ 201 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFG 201 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHH
Confidence 999999988862 1345 777776655433222222111 1 222111000 01
Q ss_pred ---chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC
Q psy16512 184 ---MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS 255 (815)
Q Consensus 184 ---~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~ 255 (815)
++.++++++ +...+++++|+++.+++++|.+.+ +++|.++|+ ++|+++|+|+++. +|.
T Consensus 202 ~~~~~~le~~i~---~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~gr 267 (459)
T 4a6r_A 202 VVAARWLEEKIL---EIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICR-----------KYDVLLVADEVICGFGR 267 (459)
T ss_dssp HHHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTT
T ss_pred HHHHHHHHHHHH---HcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEeccccCCCc
Confidence 344444332 111135788888888888898887 888999998 8999999999976 332
Q ss_pred CC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccC---cccccCceEEEEecCCcccccccCccccccC
Q psy16512 256 NM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLN---KTFYGGGTVKISMANENFHIKKDGLFEKFED 327 (815)
Q Consensus 256 ~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (815)
.. . +.....+|+++ ++|.+++. -.+|++++++++++.+. +...+ ..
T Consensus 268 ~G~~~~~~~~~~~pdi~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~------------------------~t 321 (459)
T 4a6r_A 268 TGEWFGHQHFGFQPDLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHG------------------------FT 321 (459)
T ss_dssp TSSSSHHHHHTCCCSEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHH------------------------HH
T ss_pred ccccchHhhcCCCCCeee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccC------------------------CC
Confidence 11 1 11123578765 56988743 24799999988876553 11111 11
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHH-HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC
Q psy16512 328 GTVNYLAIISLKYGFDTMEKKRKSFTNAF-ELSQYTYFYF-KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG 405 (815)
Q Consensus 328 gt~~~~~~~al~~al~~l~~~~~~~~~~~-~l~~~l~~~L-~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~ 405 (815)
.+.|.++.+++.++++.+... ...++.+ ++.+++.+.| +.+. ..|.+..+. ..+.++.+.+.....
T Consensus 322 ~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~--------~~g~~~~~~~~~~~~ 389 (459)
T 4a6r_A 322 YSGHPVCAAVAHANVAALRDE-GIVQRVKDDIGPYMQKRWRETFS---RFEHVDDVR--------GVGMVQAFTLVKNKA 389 (459)
T ss_dssp HCSCHHHHHHHHHHHHHHHHT-CHHHHHHHTHHHHHHHHHHHHHT---TCTTEEEEE--------EETTEEEEEECSBTT
T ss_pred CCCCHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------EEEEEEEEEEecCcc
Confidence 245667777777788776542 1236667 7777777777 4441 114454442 236788888764221
Q ss_pred C--cc-----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC
Q psy16512 406 T--YY-----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478 (815)
Q Consensus 406 ~--~~-----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~ 478 (815)
. .+ ....+.+.|.++||.++++ .+++||++++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~~~~~ 429 (459)
T 4a6r_A 390 KRELFPDFGEIGTLCRDIFFRNNLIMRAC----------------------------------------GDHIVSAPPLV 429 (459)
T ss_dssp TTBCCSSTTHHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTT
T ss_pred ccccccchHHHHHHHHHHHHHCCeEEecC----------------------------------------CCEEEEECCCC
Confidence 1 00 0235677788889998753 15799999999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q psy16512 479 SNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 479 ~t~edi~~lv~~L~~~~~~ 497 (815)
.|++++++++++|++++.+
T Consensus 430 ~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 430 MTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998754
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-16 Score=174.01 Aligned_cols=343 Identities=13% Similarity=0.066 Sum_probs=204.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..+. ...... ..++.++++++++...+. |+||+|++
T Consensus 43 g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~sGs 114 (448)
T 3dod_A 43 GKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLL--GMTNVP----ATQLAETLIDISPKKLTR--VFYSDSGA 114 (448)
T ss_dssp SCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCS--SSEEHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc--ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCchH
Confidence 3456665542 234688888888877543221111 112233 678889999999766555 99999999
Q ss_pred hhHHHHHhhhccC---CC----c-EEEecCCCcchh-hHHHHhhcc-----------c--eEEcCch-----------hh
Q psy16512 135 SAIKTVSEYFEFN---EG----S-FIYLTDNHTSVL-GMRELVKTN-----------Q--IYSFSVD-----------DA 181 (815)
Q Consensus 135 ~al~~~~~al~~~---~g----d-vv~~~~~h~s~~-~~~~~~~~~-----------g--~v~~~~~-----------~~ 181 (815)
+|+..++..+... +| + ||+....|+... ......... + .++.... ..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD 194 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence 9999999887621 44 5 777776654322 211111100 0 1111110 11
Q ss_pred hcchhhhhhhhhhhhhcCCCccEEEEeccc-CCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCC
Q psy16512 182 RNMLNEFKESQENVENMRHSNSLFVYPAES-NFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGS 255 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~-n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~ 255 (815)
.+++.++++++ ...+++++|+++.++ |++|.+.+ +++|.++|+ +||+++|+|+++. +|.
T Consensus 195 ~d~~~le~~l~----~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~lI~DEv~~g~g~ 259 (448)
T 3dod_A 195 QCLRELAQLLE----EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCT-----------TYDVLMIVDEVATGFGR 259 (448)
T ss_dssp HHHHHHHHHHH----HHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTT
T ss_pred HHHHHHHHHHH----hCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHH-----------HhCCEEEEeccccCCCc
Confidence 13444554332 112457888888888 99998877 888899998 8999999999976 332
Q ss_pred C--C--CCCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 256 N--M--LDLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 256 ~--~--~dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
. . .+.....+|++ +++|.+++. ..+|++++++++++.+.+....... . ......+.
T Consensus 260 ~g~~~a~~~~~~~~di~--t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~----------------~-~~~~t~~~ 320 (448)
T 3dod_A 260 TGKMFACEHENVQPDLM--AAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT----------------F-FHGHSYTG 320 (448)
T ss_dssp TSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC----------------C-CCCCTTTT
T ss_pred ccchhhhhhcCCCCCEE--EecccccCCcCceEEEEECHHHHHHhhhccccCCc----------------c-cccCCCCc
Confidence 1 1 11122346766 466988843 1479999999887766431100000 0 00112245
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc--c
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY--Y 408 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~--~ 408 (815)
|.+++.++.++++.+... ...++.+++.+++.+.|.++. ..|.+.... ..+.++.+.+....... +
T Consensus 321 ~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~ 388 (448)
T 3dod_A 321 NQLGCAVALENLALFESE-NIVEQVAEKSKKLHFLLQDLH---ALPHVGDIR--------QLGFMCGAELVRSKETKEPY 388 (448)
T ss_dssp CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT---TSTTEEEEE--------EETTEEEEEECSBTTTTBCC
T ss_pred CHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------eeeEEEEEEEccCccccccc
Confidence 667777777888776542 123677777777777776531 113343331 23678888876422110 0
Q ss_pred C-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 409 G-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 409 ~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
. ...+.+.|.++||.++++ .+++|+++++..|+++
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~----------------------------------------~~~iRi~~~~~~t~e~ 428 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPL----------------------------------------GDVIAFLPPLASTAEE 428 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEE----------------------------------------TTEEEECCCTTCCHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEecc----------------------------------------CCEEEEECCCCCCHHH
Confidence 0 135777788889998753 1689999998999999
Q ss_pred HHHHHHHHHHHHhh
Q psy16512 484 VKYFLSFLNQYFLQ 497 (815)
Q Consensus 484 i~~lv~~L~~~~~~ 497 (815)
+++++++|++++.+
T Consensus 429 i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 429 LSEMVAIMKQAIHE 442 (448)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-15 Score=170.38 Aligned_cols=345 Identities=13% Similarity=0.089 Sum_probs=212.6
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..+. ...... ..++.++++++++.+.+. |+|++|++
T Consensus 53 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--v~~~~sGs 124 (476)
T 3i5t_A 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPW--YMATSP----AARLAEKIATLTPGDLNR--IFFTTGGS 124 (476)
T ss_dssp CCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTT--TCBCHH----HHHHHHHHHTTSSTTCCE--EEEESSHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccC--ccCCHH----HHHHHHHHHhcCCCCcCE--EEEeCchH
Confidence 4456665443 234788899888877653222221 112233 678889999999766665 99999999
Q ss_pred hhHHHHHhhhccC------CC-c-EEEecCCCcchhhHHHHhhcc------------c--eEEcCchhh-hc--------
Q psy16512 135 SAIKTVSEYFEFN------EG-S-FIYLTDNHTSVLGMRELVKTN------------Q--IYSFSVDDA-RN-------- 183 (815)
Q Consensus 135 ~al~~~~~al~~~------~g-d-vv~~~~~h~s~~~~~~~~~~~------------g--~v~~~~~~~-~~-------- 183 (815)
+|+..++..+... +| + ||.....|.........+... + .++...... .+
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999999887521 33 3 777666654433222111110 1 121111000 01
Q ss_pred --chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC
Q psy16512 184 --MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN 256 (815)
Q Consensus 184 --~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~ 256 (815)
.+.++++++ +...+++++|+++.+++++|.+.+ +++|.++|+ ++|+++|+|+++. +|..
T Consensus 205 ~~~~~le~~i~---~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~-----------~~gillI~DEv~~g~gr~ 270 (476)
T 3i5t_A 205 DLVQEFEDRIE---SLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICE-----------KHDILYISDEVVTGFGRC 270 (476)
T ss_dssp HHHHHHHHHHH---HHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTT
T ss_pred HHHHHHHHHHH---hcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCccc
Confidence 334444332 111145789999999999998766 788888888 8999999999976 3221
Q ss_pred --CC--C-CCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCC
Q psy16512 257 --ML--D-LKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTV 330 (815)
Q Consensus 257 --~~--d-l~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 330 (815)
.. . .....+|+++ ++|.+++. -.+|++++++++++.+.+........ ......+.
T Consensus 271 G~~~~~~~~~~v~pdi~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~-----------------~~~~t~~~ 331 (476)
T 3i5t_A 271 GEWFASEKVFGVVPDIIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWF-----------------TNGYTYSN 331 (476)
T ss_dssp SSSCHHHHTTCCCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEE-----------------CCCCTTTT
T ss_pred cCceeeecccCCCcchhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccc-----------------cccCCCCc
Confidence 11 1 2233578775 56988842 23799999998876664321000000 00112245
Q ss_pred ChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCc--c
Q psy16512 331 NYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY--Y 408 (815)
Q Consensus 331 ~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~--~ 408 (815)
|..+++|+.++++.+... ...++.+++.+++.+.|+.+. ..|.+..+. ..+.++.+.+....... +
T Consensus 332 np~a~aAa~aaL~~~~~~-~~~~~~~~~~~~l~~~L~~l~---~~~~v~~v~--------~~G~~~~i~~~~~~~~~~~~ 399 (476)
T 3i5t_A 332 QPVACAAALANIELMERE-GIVDQAREMADYFAAALASLR---DLPGVAETR--------SVGLVGCVQCLLDPTRADGT 399 (476)
T ss_dssp CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHTTT---TSTTEEEEE--------EETTEEEEEECCC-----CC
T ss_pred CHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHh---cCCCeEEEE--------ecCceeEEEEecCccccccc
Confidence 667777777888877542 223888888999999888652 124454442 23678888876432110 0
Q ss_pred -----CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHH
Q psy16512 409 -----GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDD 483 (815)
Q Consensus 409 -----~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~ed 483 (815)
....+.+.|.++||.+++. .+++||++++..|+++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~p~l~~t~e~ 439 (476)
T 3i5t_A 400 AEDKAFTLKIDERCFELGLIVRPL----------------------------------------GDLCVISPPLIISRAQ 439 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTTCCHHH
T ss_pred cchhHHHHHHHHHHHHCCCEEEec----------------------------------------CCEEEEECCCCCCHHH
Confidence 0234667778889998751 1689999998899999
Q ss_pred HHHHHHHHHHHHhhc
Q psy16512 484 VKYFLSFLNQYFLQQ 498 (815)
Q Consensus 484 i~~lv~~L~~~~~~~ 498 (815)
+++++++|++++.+-
T Consensus 440 i~~~l~~l~~~l~~~ 454 (476)
T 3i5t_A 440 IDEMVAIMRQAITEV 454 (476)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987543
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=178.73 Aligned_cols=329 Identities=11% Similarity=0.031 Sum_probs=201.0
Q ss_pred hhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 61 DICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
+..|+|..+.. ..++.+.+++.+++.... +.. .... ..++.++++++++ +++. |+|++|+
T Consensus 51 g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~----~~~la~~l~~~~~-~~~~--v~~~~gg 117 (427)
T 3fq8_A 51 GNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGA------PCAL----ENVLAEMVNDAVP-SIEM--VRFVNSG 117 (427)
T ss_dssp SCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSS------CCHH----HHHHHHHHHHHST-TCSE--EEEESSH
T ss_pred CCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCC------CCHH----HHHHHHHHHHhCC-CCCE--EEEeCCH
Confidence 44577765432 237888888887775421 111 2233 6788899999997 5555 9999999
Q ss_pred hhhHHHHHh---hhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchh------------hhcchhhhhhhhhh
Q psy16512 134 TSAIKTVSE---YFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDD------------ARNMLNEFKESQEN 194 (815)
Q Consensus 134 t~al~~~~~---al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~------------~~~~~~~~~~l~~~ 194 (815)
++|+..++. .+. +++++|+....|+........+...+ .++..... ..+++.++++++
T Consensus 118 sea~~~al~~a~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~-- 194 (427)
T 3fq8_A 118 TEACMAVLRIMRAYT-GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFA-- 194 (427)
T ss_dssp HHHHHHHHHHHHHHH-CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhh-CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHH--
Confidence 999999984 333 34447776666544222111110000 00110000 014455555443
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC-----CCCCCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-----MLDLKQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-----~~dl~~~~~ 265 (815)
...+++++|+++.++|++|.+.| +++|.++|+ ++|+++|+|+++. +.. ..+.....+
T Consensus 195 --~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~-g~~~g~~~~~~~~~~~~ 260 (427)
T 3fq8_A 195 --ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITL-----------EHDALLVFDEVIT-GFRIAYGGVQEKFGVTP 260 (427)
T ss_dssp --HSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTT-BTTTBTTHHHHHTTCCC
T ss_pred --hCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecccc-ccccCcchhhHhcCCCC
Confidence 12236899999999999999999 999999999 8999999999987 220 011112346
Q ss_pred cEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 266 D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
|++ |++|.|+ + | +|++++++++++.+.+... . ......+.|..+++++.++++
T Consensus 261 di~--t~sK~~~-~-G~~~G~~~~~~~~~~~~~~~~~--~-------------------~~~~t~~~~~~~~aa~~aal~ 315 (427)
T 3fq8_A 261 DLT--TLGKIIG-G-GLPVGAYGGKREIMQLVAPAGP--M-------------------YQAGTLSGNPLAMTAGIKTLE 315 (427)
T ss_dssp SEE--EECGGGG-T-TSSCEEEEECHHHHTTBTTTSS--B-------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred Chh--hhhhhhh-C-CcceEEEEEcHHHHHhhccCCC--c-------------------cccCCCCcCHHHHHHHHHHHH
Confidence 764 5669998 4 5 8999999888766643100 0 001112347777777778877
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~ 414 (815)
.+.. ....++.+++.+++.+.|.++.... +..... ...+.++.+.+...... ......+.
T Consensus 316 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 384 (427)
T 3fq8_A 316 LLRQ-PGTYEYLDQITKRLSDGLLAIAQET--GHAACG--------GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFH 384 (427)
T ss_dssp HHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCCeEE--------EEeeeEEEEEEecCccccccccccccHHHHHHHH
Confidence 6644 1223778888888888887651000 100011 12367888877542211 00123577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. . |++++...|++|+++++++|+++
T Consensus 385 ~~l~~~Gi~v~~~~~---------------------------------------~--r~~~~~~~t~e~i~~~l~~l~~~ 423 (427)
T 3fq8_A 385 RGMLEQGIYLAPSQF---------------------------------------E--AGFTSLAHTEEDIDATLAAARTV 423 (427)
T ss_dssp HHHHHTTEECCSSTT---------------------------------------S--CEECCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCcEEecCCC---------------------------------------C--CEEeeCcCCHHHHHHHHHHHHHH
Confidence 778889999876421 2 44556678999999999999998
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 424 l~ 425 (427)
T 3fq8_A 424 MS 425 (427)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=177.22 Aligned_cols=242 Identities=14% Similarity=0.007 Sum_probs=162.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEe--cCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHH--------HHhhccc--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMR--------ELVKTNQ-- 172 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~--t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~--------~~~~~~g-- 172 (815)
.+++++.+++++|++.. +++ ++|+++|+.+++.++. ++|| |++.. ..|+....+. ..+...|
T Consensus 76 ~~~Le~~lA~l~g~e~a---lv~p~~~sGt~A~~~al~all-~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 151 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA---FVRPHFVNGTHAIGAALFGNL-RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVK 151 (427)
T ss_dssp HHHHHHHHHHHHTCSEE---EEETTCCSHHHHHHHHHHHTC-CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCE
T ss_pred HHHHHHHHHHHhCCCce---EEeCCCCcHHHHHHHHHHHhc-CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCE
Confidence 77899999999998652 554 7888999999999997 9999 77776 6776655333 3344455
Q ss_pred eEEcC-chhhhcchhhhhhhhhhhhhcCCCccEEEEec----ccCCCccccChHHHHHHhhccccccccccCC--CCeEE
Q psy16512 173 IYSFS-VDDARNMLNEFKESQENVENMRHSNSLFVYPA----ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR--SNCFV 245 (815)
Q Consensus 173 ~v~~~-~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~----~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~--~gi~v 245 (815)
+..++ .++..+++.++++++ + .++|++|++++ ++||||.+.|+++|.++|+ + +|+++
T Consensus 152 ~~~v~~~~~~~d~e~l~~~i~---~--~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~-----------~~~~g~~l 215 (427)
T 3hvy_A 152 YKMVDLKDGKVDINTVKEELK---K--DDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIR-----------EVNENVIV 215 (427)
T ss_dssp EEECCCBTTBCCHHHHHHHHH---H--CTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHH-----------HHCSSSEE
T ss_pred EEEecCCCCCcCHHHHHHHhh---C--CCCCEEEEEECCCCCCCCccccHHHHHHHHHHHH-----------HhCCCCEE
Confidence 44444 345677777776442 0 15799999999 9999999999999999999 7 89999
Q ss_pred EEecccccCCCCCCCCCCCCcEEEEccccccccC--CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccc
Q psy16512 246 LLDAATYCGSNMLDLKQHQPDFISISFYKMFGYP--TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFE 323 (815)
Q Consensus 246 ivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p--~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 323 (815)
++|++++.+........+++|+++.|+||++|++ ...|+++.++++++.++......+.
T Consensus 216 ivD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~------------------- 276 (427)
T 3hvy_A 216 FVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGI------------------- 276 (427)
T ss_dssp EEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTT-------------------
T ss_pred EEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCc-------------------
Confidence 9999998776222223457899999999999952 1238999998887766432110000
Q ss_pred cccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 324 KFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 324 ~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
....+ +++.....+..++..+. ...++..+.+.++.+.|+++ +++++.... ...+.-+++|.+.
T Consensus 277 g~~~~-~~~~~a~~~~~gl~~~~---~r~~~~~~~a~~la~~L~~~-------g~~V~p~~~---~~~~~li~~~~l~ 340 (427)
T 3hvy_A 277 GGECG-STFGVMRSLYEGLFMAP---HVTIEAVKGAVFCARIMELA-------GFDVLPKYN---DKRTDIIQAIKFN 340 (427)
T ss_dssp GGGCC-CCTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT-------TCEEESCTT---SCCSSSEEEEECS
T ss_pred ccccC-CCHHHHHHHHHhHhHHH---HHHHHHHHHHHHHHHHHHhC-------CCeecCCCC---CCCceEEEEEeCC
Confidence 01111 11111223333443332 23477888888999999987 456643221 1233448888875
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=173.46 Aligned_cols=341 Identities=12% Similarity=0.055 Sum_probs=212.1
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++....+..... ...... ..++.++++++++.+.+. |+|++|++
T Consensus 54 G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~-~~~~~~----~~~lae~l~~~~~~~~~~--v~~~~sGs 126 (472)
T 3hmu_A 54 GEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF-KTTHVP----AIALAQKLAELAPGDLNH--VFFAGGGS 126 (472)
T ss_dssp CCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS-SEECHH----HHHHHHHHHHHSCTTEEE--EEEESSHH
T ss_pred CCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc-ccCCHH----HHHHHHHHHHhCCCCCCE--EEEeCCHH
Confidence 4556665542 2346888888888776532111111 112223 668889999998776655 99999999
Q ss_pred hhHHHHHhhhcc------CC-Cc-EEEecCCCcchhhHHHHhhcc-----------c--eEEcCchhh----hc------
Q psy16512 135 SAIKTVSEYFEF------NE-GS-FIYLTDNHTSVLGMRELVKTN-----------Q--IYSFSVDDA----RN------ 183 (815)
Q Consensus 135 ~al~~~~~al~~------~~-gd-vv~~~~~h~s~~~~~~~~~~~-----------g--~v~~~~~~~----~~------ 183 (815)
+|+..++..+.. ++ ++ +|.....|.........+... + .++...... .+
T Consensus 127 eA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~~ 206 (472)
T 3hmu_A 127 EANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHHH
Confidence 999999988762 12 34 777666554432211111110 1 222211000 01
Q ss_pred --chhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC
Q psy16512 184 --MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN 256 (815)
Q Consensus 184 --~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~ 256 (815)
++.++++++ +...+++++|+++.+++++|.+.| +++|.++|+ ++|+++|+|+++. +|..
T Consensus 207 ~~~~~le~~i~---~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~-----------~~gillI~DEv~~gfgr~ 272 (472)
T 3hmu_A 207 ARARELEEAIL---ELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICD-----------KYDILLIADEVICGFGRT 272 (472)
T ss_dssp HHHHHHHHHHH---HHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTT
T ss_pred HHHHHHHHHHH---hcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEEccccCCccc
Confidence 334444332 111245789999999999999987 888999998 8999999999976 3321
Q ss_pred C--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 257 M--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 257 ~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
. . +.....+|+++ ++|.+++. -.+|++++++++++.+.+..+. .....+.|
T Consensus 273 G~~~a~~~~~v~pdi~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~----------------------~~~t~~~n 328 (472)
T 3hmu_A 273 GNWFGTQTMGIRPHIMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFN----------------------HGYTYSGH 328 (472)
T ss_dssp SSSCHHHHHTCCCSEEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBC----------------------CCCTTTTC
T ss_pred CccchhHHhCCCCceee--echhhhcCCcceEEEEECHHHHHhcccCCcc----------------------ccCCCCCC
Confidence 1 1 11123578875 56988743 2379999999887665221000 01112456
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Ccc
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAF-ELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TYY 408 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~-~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~~ 408 (815)
.++.+++.++++.+... ...++.+ ++.+++++.|+++.. .|.+..+. ..+.++.+.+..... ..+
T Consensus 329 p~a~aAa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~l~~---~~~v~~vr--------~~G~~~~i~~~~~~~~~~~~ 396 (472)
T 3hmu_A 329 PVAAAVALENLRILEEE-NILDHVRNVAAPYLKEKWEALTD---HPLVGEAK--------IVGMMASIALTPNKASRAKF 396 (472)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHTHHHHHHHHHHGGGG---STTEEEEE--------EETTEEEEEECSCGGGTCCB
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHhc---CCCeEEEE--------ecCceEEEEEecCccccccc
Confidence 67777777888876542 2237788 888889988877621 14454442 236788888763211 000
Q ss_pred ------CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 409 ------GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 409 ------~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
....+.+.|.++||.++++ .++|||++.+..|++
T Consensus 397 ~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------------------g~~iRi~p~~~~t~e 436 (472)
T 3hmu_A 397 ASEPGTIGYICRERCFANNLIMRHV----------------------------------------GDRMIISPPLVITPA 436 (472)
T ss_dssp SSCTTHHHHHHHHHHHHTTBCCEEE----------------------------------------TTEEEECCCTTCCHH
T ss_pred cchhHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEECCCCCCHH
Confidence 0235677788889988753 158999999899999
Q ss_pred HHHHHHHHHHHHHhhc
Q psy16512 483 DVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 483 di~~lv~~L~~~~~~~ 498 (815)
++++++++|++++.+-
T Consensus 437 ~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 437 EIDEMFVRIRKSLDEA 452 (472)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987654
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-15 Score=169.94 Aligned_cols=340 Identities=10% Similarity=-0.013 Sum_probs=206.2
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+..|+|..+. +.-++.+.+++.+++.... +.......... ..++.++++++++.. .+ .++||+|+
T Consensus 60 g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~~~~~~~~----~~~la~~l~~~~~~~~~~--~v~~~~sG 131 (451)
T 3oks_A 60 GNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT--HTCFMVTPYEG----YVAVCEQLNRLTPVRGDK--RSALFNSG 131 (451)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS--CCTTTTSCCHH----HHHHHHHHHHHSSCCSSE--EEEEESSH
T ss_pred CCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc--cccCCccCCHH----HHHHHHHHHHhCCcCCCC--EEEEeCcH
Confidence 4457776543 1236888888888775421 11111112223 668889999998754 23 49999999
Q ss_pred hhhHHHHHhhhccCCC-c-EEEecCCCcchhh-HHHHhhcc------------c--eEEcCchh-------------hhc
Q psy16512 134 TSAIKTVSEYFEFNEG-S-FIYLTDNHTSVLG-MRELVKTN------------Q--IYSFSVDD-------------ARN 183 (815)
Q Consensus 134 t~al~~~~~al~~~~g-d-vv~~~~~h~s~~~-~~~~~~~~------------g--~v~~~~~~-------------~~~ 183 (815)
++|+..++..+...+| + +|.....|+.... ........ + .+++.... ..+
T Consensus 132 seA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 211 (451)
T 3oks_A 132 SEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELA 211 (451)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHH
Confidence 9999999977652134 4 7776666554332 22221110 1 23333110 011
Q ss_pred chhhhhhhhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC-
Q psy16512 184 MLNEFKESQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN- 256 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~- 256 (815)
.+.+.+. +.+.+. +++.+|+++..++..|.+.+ +++|.++|+ +||+++|+|+++. ++..
T Consensus 212 ~~~~~~~---l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~g~g~~g 277 (451)
T 3oks_A 212 AKRAITV---IDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCR-----------KNDVVFIADEVQTGFARTG 277 (451)
T ss_dssp HHHHHHH---HHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTS
T ss_pred HHHHHHH---HHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEecccCCCccc
Confidence 2222222 222223 34677777777777778777 888999999 8999999999976 3221
Q ss_pred -C--CCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 257 -M--LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 257 -~--~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
. .+.....+|++ |++|.+++.-.+|++++++++++.+.+... ....+.|.+
T Consensus 278 ~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~------------------------~~t~~~~~~ 331 (451)
T 3oks_A 278 AMFACEHEGIDPDLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGL------------------------GGTYGGNPI 331 (451)
T ss_dssp SSSGGGGGTCCCSEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSB------------------------CCSSSSCHH
T ss_pred cchhhhhcCCCCCee--eehhhhhCCcceEEEEECHHHHhhhcCCCc------------------------CCCCCCCHH
Confidence 1 11112346776 677999832237999999888766643221 112245667
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CCccCH
Q psy16512 334 AIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GTYYGY 410 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~ 410 (815)
+..++.++++.+... ...++.+++.+++++.|.++.. ..|.+..+. ..+.++.+.+.... ......
T Consensus 332 ~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~--------~~G~~~~~~~~~~~~~~~~~~~~ 400 (451)
T 3oks_A 332 ACAAALATIETIESE-GLVARAQQIEKIMKDRLGRLQA--EDDRIGDVR--------GRGAMIAMELVKAGTTEPDADLT 400 (451)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTEEEEE--------EETTEEEEEEBSTTSCCBCHHHH
T ss_pred HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEE--------EeeEEEEEEEecCccCCCCHHHH
Confidence 777777888876542 2237777777777777765410 003443332 23678888875311 011123
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
..+.+.|.++||.++++.. ..+++|+++++..+++++++++++
T Consensus 401 ~~~~~~l~~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~ 443 (451)
T 3oks_A 401 KALCAGAHAAGVIVLSCGT-------------------------------------YGNVVRFLPPLSIGDDLLNEGLDV 443 (451)
T ss_dssp HHHHHHHHHTTEECEEECT-------------------------------------TSCEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcEEecCCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHH
Confidence 4577788899999876421 136899999999999999999999
Q ss_pred HHHHHh
Q psy16512 491 LNQYFL 496 (815)
Q Consensus 491 L~~~~~ 496 (815)
|++++.
T Consensus 444 l~~~l~ 449 (451)
T 3oks_A 444 LEEVLR 449 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-16 Score=173.20 Aligned_cols=330 Identities=12% Similarity=0.089 Sum_probs=199.8
Q ss_pred chhhhhhhhcccc------cchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAGV------YSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~~------~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+... .++.+.+++.+++.... ++.|+ .. ..++.++++++++ ..+. ++|++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~------~~----~~~la~~l~~~~~-~~~~--v~~~~s 117 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT------EM----EVKMAQLVTDLVP-TMDM--VRMVNS 117 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC------HH----HHHHHHHHHHHST-TCSE--EEEESS
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC------HH----HHHHHHHHHhhCC-CCCE--EEEeCc
Confidence 3567888765432 46888888888775421 12222 23 6788899999987 4555 999999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcchhh-HHHHhhccc-------------------eEEcCchhhhcchhhhhh
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTSVLG-MRELVKTNQ-------------------IYSFSVDDARNMLNEFKE 190 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s~~~-~~~~~~~~g-------------------~v~~~~~~~~~~~~~~~~ 190 (815)
+++|+..++..+.. .++.+|.....|..... ..... ..+ ...+.. .+++.++++
T Consensus 118 Gsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~ 193 (429)
T 4e77_A 118 GTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKA-GSGALTLGQPNSPGVPTDFAKHTLTCTY---NDLASVRQA 193 (429)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhc-CCcccccCCCCcCCCCCccCCceeecCC---CCHHHHHHH
Confidence 99999999885431 33347666655443322 11100 000 011111 134455544
Q ss_pred hhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc---cCCCC-CCCCC
Q psy16512 191 SQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY---CGSNM-LDLKQ 262 (815)
Q Consensus 191 l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~---~g~~~-~dl~~ 262 (815)
++ ...+++++|+++.+++.+|.+.| +++|.++|+ ++|+++|+|+++. .|... .+...
T Consensus 194 l~----~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~-----------~~~~lli~DEv~~g~r~g~~~~~~~~~ 258 (429)
T 4e77_A 194 FE----QYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCD-----------EFGALLIIDEVMTGFRVALAGAQDYYH 258 (429)
T ss_dssp HH----HSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HHTCEEEEEETTTBTTTBTTCHHHHTT
T ss_pred HH----hcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEeccccCcccCcchHHHhcC
Confidence 32 22245788888877777888888 899999999 8999999999987 22210 11112
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
..+|++ |++|.+++.-.+|+++.++++++.+.+.-.. ......+.|..+++++.+++
T Consensus 259 ~~pdi~--t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~---------------------~~~~t~~~~~~~~aaa~aal 315 (429)
T 4e77_A 259 VIPDLT--CLGKIIGGGMPVGAFGGRREVMNALAPTGPV---------------------YQAGTLSGNPIAMAAGFACL 315 (429)
T ss_dssp CCCSEE--EEEGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CC--CCCCCHHHHHHHHHHH
T ss_pred CCCCee--eecccccCCCCeEEEEECHHHHHHhccCCCc---------------------cccCCCCCCHHHHHHHHHHH
Confidence 346764 7779988322489999998887665431000 01112256778888888888
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-c---------cCHHH
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-Y---------YGYSE 412 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~---------~~~~~ 412 (815)
+.+.. ....++.+++.+++.+.|.++.... +..... ...+.++.+.+...... . ....+
T Consensus 316 ~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (429)
T 4e77_A 316 TEISQ-VGVYETLTELTDSLATGLRHAAKEE--NIPLVV--------NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKR 384 (429)
T ss_dssp HHHTS-TTHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EEeeeEEEEEEccCcccccccccccccHHHHHH
Confidence 87643 2223778888888888886641000 111111 22477888887653210 0 01135
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+.+.|.++||.++++.. ..+|++ ...|++|+++++++|+
T Consensus 385 ~~~~l~~~Gi~v~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~l~~l~ 423 (429)
T 4e77_A 385 FFHLMLEEGVYLAPSAF---------------------------------------EAGFMS--LAHSNEDIQKTVNAAR 423 (429)
T ss_dssp HHHHHHHTTEECCSSTT---------------------------------------SCEECC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEeecCC---------------------------------------CCEEEe--ccCCHHHHHHHHHHHH
Confidence 77778888999876421 235554 5679999999999999
Q ss_pred HHHh
Q psy16512 493 QYFL 496 (815)
Q Consensus 493 ~~~~ 496 (815)
+++.
T Consensus 424 ~~l~ 427 (429)
T 4e77_A 424 RCFA 427 (429)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-15 Score=170.23 Aligned_cols=344 Identities=9% Similarity=0.005 Sum_probs=203.5
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC-CCceeEEecCCc
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD-SDHYSVIFTSGA 133 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~-~~~~~iv~t~g~ 133 (815)
+..|+|..+. +..++.+.+++.+++.......+. ...... ..+++++++++++.+ .+ .|+||+|+
T Consensus 63 G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~--~~~~~~----~~~la~~l~~~~~~~~~~--~v~~~~sG 134 (453)
T 4ffc_A 63 GNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFM--VTPYEQ----YVQVAELLNALTPGDHDK--RTALFNSG 134 (453)
T ss_dssp SCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTT--TSCCHH----HHHHHHHHHHHSSCSSCE--EEEEESSH
T ss_pred CCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccC--cCCCHH----HHHHHHHHHHhCCCCCCc--EEEEeCcH
Confidence 4457776553 223788888888877542111111 112233 668889999999754 33 49999999
Q ss_pred hhhHHHHHhhhccCCC-c-EEEecCCCcchh-hHHHHhhcc------------c--eEEcCc---h--hhhcchhhhhhh
Q psy16512 134 TSAIKTVSEYFEFNEG-S-FIYLTDNHTSVL-GMRELVKTN------------Q--IYSFSV---D--DARNMLNEFKES 191 (815)
Q Consensus 134 t~al~~~~~al~~~~g-d-vv~~~~~h~s~~-~~~~~~~~~------------g--~v~~~~---~--~~~~~~~~~~~l 191 (815)
++|+..++..+...+| + +|.....|+... ......... + .+++.. + +....+.++..+
T Consensus 135 seA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 214 (453)
T 4ffc_A 135 AEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAI 214 (453)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHH
Confidence 9999999976642123 4 777776655433 222221111 1 233321 0 000011122112
Q ss_pred hhhhhhcCCC-ccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--C--CCC
Q psy16512 192 QENVENMRHS-NSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--L--DLK 261 (815)
Q Consensus 192 ~~~~~~~~~~-t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~--dl~ 261 (815)
..+++.+.++ +.+|+++..++..|.+.+ +++|.++|+ +||+++|+|+++. ++... . +..
T Consensus 215 ~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~-----------~~~~llI~DEv~~g~g~~g~~~a~~~~ 283 (453)
T 4ffc_A 215 SRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWAS-----------ENGVVFIADEVQTGFARTGAWFASEHE 283 (453)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHH
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEecCccCCCcccccchhhhc
Confidence 2223333333 566666665555667766 788888998 8999999999976 32211 1 111
Q ss_pred CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHH
Q psy16512 262 QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYG 341 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~a 341 (815)
...+|++ +++|.+++.-.+|++++++++++.+.+...+ ...+.|.++.+++.++
T Consensus 284 ~~~pdi~--t~sK~~~~G~~~G~~~~~~~i~~~~~~~~~~------------------------~t~~~~~~~~aaa~aa 337 (453)
T 4ffc_A 284 GIVPDIV--TMAKGIAGGMPLSAVTGRAELMDAVYAGGLG------------------------GTYGGNPVTCAAAVAA 337 (453)
T ss_dssp TCCCSEE--EECGGGGTTSSCEEEEEEHHHHTTSCTTSSC------------------------CSSSSCHHHHHHHHHH
T ss_pred CCCcchH--hhhhhhcCCcCeEEEEECHHHHhhhcccCcC------------------------CCCCcCHHHHHHHHHH
Confidence 2246765 5679998322389999998887666432211 1224566777777778
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC---CCccCHHHHHHhhh
Q psy16512 342 FDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD---GTYYGYSEVQNLAN 418 (815)
Q Consensus 342 l~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~---~~~~~~~~v~~~l~ 418 (815)
++.+... ...++.+++.+++.+.|.++.. ..|.+..+. ..+.++.+.+.... ........+.+.|.
T Consensus 338 l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 406 (453)
T 4ffc_A 338 LGVMREL-DLPARARAIEASVTSRLSALAE--EVDIIGEVR--------GRGAMLAIEIVKPGTLEPDAALTKSIAAEAL 406 (453)
T ss_dssp HHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCSSEEEEE--------EETTEEEEEEBCTTSCCBCHHHHHHHHHHHH
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHh--hCCCeEEEE--------eeceEEEEEEecCcccCCCHHHHHHHHHHHH
Confidence 8776542 2236777777777777655410 003444332 23678888875411 01112345777888
Q ss_pred cCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++||.++++.. ..+++|+++++..+++++++++++|++++.+
T Consensus 407 ~~Gv~v~~~~~-------------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 407 SQGVLILTCGT-------------------------------------FGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp HTTEECCEECT-------------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEecCCC-------------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999876421 1368999999999999999999999998754
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=176.21 Aligned_cols=332 Identities=9% Similarity=0.020 Sum_probs=200.4
Q ss_pred chhhhhhhhccc------ccchhhHHHHHHHHhhcc-ccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 60 KDICYLDYTGAG------VYSQSQMNQTIEQLKENI-FSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 60 ~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~-~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
++..|+|..+.. ..++.+.+++.+++.... +..|+ .. ..+++++++++++ ..+. ++|++|
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~------~~----~~~l~~~la~~~~-~~~~--v~~~~~ 117 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPT------EI----ENKLAKLVIERVP-SIEI--VRMVNS 117 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCC------HH----HHHHHHHHHHHST-TCSE--EEEESS
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCC------HH----HHHHHHHHHHhCC-CCCE--EEEeCC
Confidence 345688876543 247888888888776421 11221 22 6678899999986 4554 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcc-hhhHHHHhhccc--eEEcCc-hh-------------hhcchhhhhhhhh
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTS-VLGMRELVKTNQ--IYSFSV-DD-------------ARNMLNEFKESQE 193 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s-~~~~~~~~~~~g--~v~~~~-~~-------------~~~~~~~~~~l~~ 193 (815)
+++|+..++..+.. .+++ +|.....|.. ....... ...+ ...... .+ ..+++.++++++
T Consensus 118 Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~- 195 (429)
T 3k28_A 118 GTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIK-AGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFE- 195 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSS-CCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHh-cCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHH-
Confidence 99999999887652 2344 6666655433 2221111 1111 111100 00 013445554432
Q ss_pred hhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-----CCCCCCC
Q psy16512 194 NVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-----LDLKQHQ 264 (815)
Q Consensus 194 ~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-----~dl~~~~ 264 (815)
...+++++|++..++|++|.+.| +++|.++|+ +||+++|+|+++. +... .+.....
T Consensus 196 ---~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~~~~li~DEv~~-g~~~g~~~~~~~~~~~ 260 (429)
T 3k28_A 196 ---QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTE-----------QNGALLIFDEVMT-GFRVAYNCGQGYYGVT 260 (429)
T ss_dssp ---HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTT-TTTSSTTHHHHHHTCC
T ss_pred ---hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHH-----------HcCCEEEEecccc-ccccCcchHHHHhCCC
Confidence 11245788999888889999998 889999999 8999999999985 2110 0011224
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
+|++ +++|.|++...+|++++++++++.+.+.... ......+.|..++.++.++++.
T Consensus 261 ~di~--t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~---------------------~~~~t~~~~~~a~aaa~aal~~ 317 (429)
T 3k28_A 261 PDLT--CLGKVIGGGLPVGAYGGKAEIMRQVAPSGPI---------------------YQAGTLSGNPLAMAAGYETLVQ 317 (429)
T ss_dssp CSEE--EECGGGGTTSCCEEEEECHHHHTTBTTTSSB---------------------CCCCTTTTCHHHHHHHHHHHHT
T ss_pred Ccee--hhhhhhcCCCCeEEEEEcHHHHhhhccCCCc---------------------cccCCCCCChHHHHHHHHHHHH
Confidence 6765 5779888433489999998887665331000 0011224566677766677665
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC---------ccCHHHHHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT---------YYGYSEVQN 415 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~---------~~~~~~v~~ 415 (815)
+. ....++++++++++.+.|.++.... +.+..+ ...+.++.+.+...... .....++.+
T Consensus 318 ~~--~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (429)
T 3k28_A 318 LT--PESYVEFERKAEMLEAGLRKAAEKH--GIPHHI--------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYR 385 (429)
T ss_dssp CC--HHHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHhhC--CCCEEE--------EeeccEEEEEEecCCcccccccccccHHHHHHHHH
Confidence 43 1222788888888888887651000 111111 22367778876532210 001235677
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.|.++||.++++. .+.+|+++ ..|++|+++++++|++++
T Consensus 386 ~l~~~Gv~v~~~~---------------------------------------~~~~r~~~--~~t~e~i~~~l~~l~~~l 424 (429)
T 3k28_A 386 EMVEQGVFLPPSQ---------------------------------------FEGLFLST--VHSDADIEATIAAAEIAM 424 (429)
T ss_dssp HHHHTTEECCSST---------------------------------------TSCBCCCT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEecCC---------------------------------------CCCEEEEC--CCCHHHHHHHHHHHHHHH
Confidence 7888999987641 14578865 579999999999999987
Q ss_pred hh
Q psy16512 496 LQ 497 (815)
Q Consensus 496 ~~ 497 (815)
.+
T Consensus 425 ~~ 426 (429)
T 3k28_A 425 SK 426 (429)
T ss_dssp HT
T ss_pred HH
Confidence 53
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=172.73 Aligned_cols=291 Identities=12% Similarity=0.065 Sum_probs=175.0
Q ss_pred HHHHHHHHHhHc-CC-----CCCceeEEecCCchhhHHHHHhhhccC--CCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYF-NT-----DSDHYSVIFTSGATSAIKTVSEYFEFN--EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~-g~-----~~~~~~iv~t~g~t~al~~~~~al~~~--~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++ +. ++++.+++.|+|+++|+.+++.++. . + | |++..+.|+.+....+.++... .+++
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~-~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 151 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLK-MLNV-ETLYVTNPPYINHVNMIESRGFNLKYINF 151 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHH-TTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECC
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHH-hcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEec
Confidence 678888888876 21 2233246999999999999999887 5 7 8 9999988877765555443332 4444
Q ss_pred -Cc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecc-cCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 177 -SV-DDARNMLNEFKESQENVENMRHSNSLFVYPAE-SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 177 -~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~-~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
+. +..++.+.++++++ ..+++++++++.+ |||||..++.+++.++++ .|+++++++|+|.++.-
T Consensus 152 ~~~~~~~~d~~~l~~~l~-----~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~--------~~~~~~~~vi~De~Y~~ 218 (405)
T 3k7y_A 152 FDYNLIDINYDLFLNDLR-----NIPNGSSVILQISCYNPCSVNIEEKYFDEIIE--------IVLHKKHVIIFDIAYQG 218 (405)
T ss_dssp EETTTTEECHHHHHHHHH-----HSCSSCEEEECCSSCTTTCCCCCHHHHHHHHH--------HHHHHCCEEEEEESCTT
T ss_pred cccccCCcCHHHHHHHHH-----hCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHH--------HHHHCCeEEEEecCccc
Confidence 22 24567777766543 1235678888665 899999999888666655 34489999999988642
Q ss_pred CC-CCC--------CC-CCCCCcEEEEccccccccCCc--ceEEEE---ecccccccCcccccCceEEEEecCCcccccc
Q psy16512 254 GS-NML--------DL-KQHQPDFISISFYKMFGYPTG--LGALIV---KQKSAHVLNKTFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 254 g~-~~~--------dl-~~~~~D~vv~S~~K~~g~p~G--~G~l~~---~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 318 (815)
-. ... .+ .....-+++.||+|.|+ .+| +||+++ +++.++.+...+..
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlRiG~~~~~~~~~~~~~~~~~~l~~----------------- 280 (405)
T 3k7y_A 219 FGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS-LYGERAGALHIVCKNQEEKKIVFNNLCF----------------- 280 (405)
T ss_dssp TSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC-CTTTTEEEEEEECSSHHHHHHHHHHHHH-----------------
T ss_pred ccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC-CccccceEEEEEeCCHHHHHHHHHHHHH-----------------
Confidence 11 100 00 11123477889999999 667 899875 23333222111000
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHH---Hhhh---hhH-HHHHHHHHHHHHHHH----hccccCCCCcEEEcCCCCCC
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTM---EKKR---KSF-TNAFELSQYTYFYFK----QLSYSNGQPLVELYHDTDYG 387 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~---~~~-~~~~~l~~~l~~~L~----~l~~~~~~p~~~l~~~~~~~ 387 (815)
..+....+++..+..++..+++.- ..+. ..+ +++++.++++.+.|+ ++.. ...++++.+.+
T Consensus 281 ---~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~---~~~~~~~~p~g-- 352 (405)
T 3k7y_A 281 ---IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL---NYDWNVYKKQR-- 352 (405)
T ss_dssp ---HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC---CCCGGGGSSCC--
T ss_pred ---HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCCccccCCc--
Confidence 001111234445554544444321 1111 122 667888899999998 6610 00134443332
Q ss_pred CCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 388 ESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 388 ~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.++++.++. + ..+.|.++||.+.+|
T Consensus 353 -----g~f~~~~l~~---~------~~~~L~~~gV~v~p~---------------------------------------- 378 (405)
T 3k7y_A 353 -----GLFSFVPLLA---K------IAEHLKTHHIYIINN---------------------------------------- 378 (405)
T ss_dssp -----SSEEECGGGG---G------GTTTTTTTTEECCTT----------------------------------------
T ss_pred -----eEEEecCCCH---H------HHHHHHHCCEeecCC----------------------------------------
Confidence 3344433321 1 223458889988642
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+ |||++.. ++++|++++++|.+++.
T Consensus 379 -~--Ris~a~~-~~~~i~~~~~~i~~~~~ 403 (405)
T 3k7y_A 379 -G--RINVSGI-TKNNVDYIADKICLSLS 403 (405)
T ss_dssp -S--EEEGGGC-CTTHHHHHHHHHHHHHH
T ss_pred -C--eEEEecc-CHHHHHHHHHHHHHHHh
Confidence 3 9999743 56889999999999764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=175.52 Aligned_cols=257 Identities=12% Similarity=0.074 Sum_probs=162.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEec-CCCcchhhHH-------HHhhccc----e
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLT-DNHTSVLGMR-------ELVKTNQ----I 173 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~-~~h~s~~~~~-------~~~~~~g----~ 173 (815)
.+++++.+++++|++.....++++ |+|+|+..++.++. ++|| ||+.. ..|+++.... ..++..| .
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~-~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~ 144 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGIL-RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNA 144 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTC-CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEE
T ss_pred HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhC-CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEE
Confidence 678999999999987643112355 66899999999987 9999 77776 7888766544 2333345 3
Q ss_pred EEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEec-ccCCCccc---cChHHHHHHhhccccccccccCC--CCeEEEE
Q psy16512 174 YSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPA-ESNFSGTK---YPLSWCNTVHRNHVFKKHFKCSR--SNCFVLL 247 (815)
Q Consensus 174 v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~-~~n~tG~~---~~l~~I~~l~~~~~~~~~~~~~~--~gi~viv 247 (815)
++.++++..+++.+++++ +++|++|++++ ++||+|.. .++++|.++|+ + +|+++++
T Consensus 145 v~~~~~~~~d~e~l~~~l-------~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~-----------~~~~~~~liv 206 (431)
T 3ht4_A 145 VPLTEGGLVDFEAVAAAI-------HSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVK-----------EIKPDVVVFV 206 (431)
T ss_dssp CCBCTTSSBCHHHHHHHC-------CTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHH-----------HHCTTCEEEE
T ss_pred eCCCCCCCcCHHHHHhhc-------CCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHH-----------hhCCCCEEEE
Confidence 444445556777776644 46899999995 55555554 45666677777 7 9999999
Q ss_pred ecccccCCCCCCCCCCCCcEEEEcccccccc---CCcceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 248 DAATYCGSNMLDLKQHQPDFISISFYKMFGY---PTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 248 D~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~---p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
|++++.+....+...+++|+++.|++|++|+ |.| |+++.++++++.++......+. .
T Consensus 207 Dea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~-------------------g 266 (431)
T 3ht4_A 207 DNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGI-------------------G 266 (431)
T ss_dssp ECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTT-------------------T
T ss_pred eCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCc-------------------c
Confidence 9999887643334455789999999999775 666 9999998887766432211000 0
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~ 404 (815)
...+ +++....++..++..+. ...++..+.+.++.+.|+++ +++++.... ...++-++.+.+.+.
T Consensus 267 ~~~~-~~~~~~~~~~~~l~~~~---~~~~~~~~~a~~l~~~L~~~-------g~~v~p~~~---~~~~~li~~i~l~~~- 331 (431)
T 3ht4_A 267 AEAG-ASLYSLQEMYQGFFLAP---HVAGQALKGAIFTAAFLEKL-------GMNTSPAWN---APRTDLIQSVQFDDK- 331 (431)
T ss_dssp TSCS-CCCSCSHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-------TCCEESCTT---SCCSSSCCEEECCCH-
T ss_pred cccC-ccHHHHHHHHhHhhhHH---HHHHHHHHHHHHHHHHHHhC-------cCEecCCCC---CCCccEEEEEEeCCH-
Confidence 0111 11111122333444332 22367788888899999887 445543221 223445778877532
Q ss_pred CCccCHHHHHHhhhcCC
Q psy16512 405 GTYYGYSEVQNLANLKK 421 (815)
Q Consensus 405 ~~~~~~~~v~~~l~~~g 421 (815)
+ ....+.+.|.+..
T Consensus 332 -~--~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 332 -D--RMIAFCQAIQYAS 345 (431)
T ss_dssp -H--HHHHHHHHHHHTS
T ss_pred -H--HHHHHHHHHHhcC
Confidence 1 1123555565543
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=171.52 Aligned_cols=329 Identities=10% Similarity=0.026 Sum_probs=202.3
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+.+... . +.. ..... ..+++++++++++ ..+. |+|++|++
T Consensus 55 g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~---~-~~~-~~~~~----~~~l~~~la~~~~-~~~~--v~~~~sgs 122 (434)
T 2epj_A 55 GARIVDLVLAYGPLILGHKHPRVLEAVEEALARG---W-LYG-APGEA----EVLLAEKILGYVK-RGGM--IRFVNSGT 122 (434)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---S-CCS-SCCHH----HHHHHHHHHHHHC-TTCE--EEEESSHH
T ss_pred CCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC---C-CCC-CCCHH----HHHHHHHHHHhCC-CCCE--EEEeCCHH
Confidence 3456665433 235678888888776542 1 111 11223 6788999999985 3444 99999999
Q ss_pred hhHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhh----------ccc--------eEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVK----------TNQ--------IYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~----------~~g--------~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+.+++.+ +. .++++|+....|+.... ...... ..| .+++.. .+++.++++++
T Consensus 123 eA~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---~d~~~le~~l~ 198 (434)
T 2epj_A 123 EATMTAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY---NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC---CCHHHHHHHHH
Confidence 999999987 54 55557777666544221 110000 001 111111 24455555443
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCC--C-C--CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN--M-L--DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~--~-~--dl~~~ 263 (815)
...+++++|+++.+++++|.+.| +++|.++|+ ++|+++|+|++++ |.. . . +....
T Consensus 199 ----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~-g~~~g~~~~~~~~~~ 262 (434)
T 2epj_A 199 ----EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSR-----------ESGALLILDEVVT-GFRLGLEGAQGYFNI 262 (434)
T ss_dssp ----HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHH-----------HHTCEEEEEETTT-TTTSSTTHHHHHHTC
T ss_pred ----hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHH-----------HcCCEEEEEcchh-ceeCCcchhhHHhCC
Confidence 11135788888888888999998 889999999 8999999999987 321 1 0 01122
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|++++.-.+|++++++++++.+.+.. .. ......+.|..+++++.++++
T Consensus 263 ~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~---~~------------------~~~~t~~~~~~~~aa~~a~l~ 319 (434)
T 2epj_A 263 EGDII--VLGKIIGGGFPVGAVAGSREVMSLLTPQG---KV------------------FNAGTFNAHPITMAAGLATLK 319 (434)
T ss_dssp CCSEE--EEEGGGGTTSSCEEEEECHHHHTTBTTTS---SB------------------CCCCTTTTCHHHHHHHHHHHH
T ss_pred CCCee--eecchhcCCcceeeeeecHHHHHhhccCC---Cc------------------ccCCCCCcCHHHHHHHHHHHH
Confidence 47865 77899983112799999988776554310 00 001112456777778888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~ 414 (815)
.+.+ ....++.+++++++.+.|+++.... +....+ ...++++.+.+..... .......+.
T Consensus 320 ~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 2epj_A 320 ALEE-EPVYSVSREAAKALEEAASEVLDRT--GLPYTI--------NRVESMMQLFIGVEEVSNAAQARKADKKFYVKLH 388 (434)
T ss_dssp HHHH-SCHHHHHHHHHHHHHHHHHHHHHHH--TCCEEE--------EEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHHHHHHHHHHHHHhhC--CCcEEE--------EEeeeEEEEEEeCCCcccchhccccCHHHHHHHH
Confidence 7765 2233888889999998887651000 111111 1236788888764110 001134577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. ..+|++ ...+++|+++++++|+++
T Consensus 389 ~~l~~~Gv~v~~~~~---------------------------------------~~~~~~--~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 389 EEMLRRGVFIAPSNL---------------------------------------EAVFTG--LPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHTTEECCSSTT---------------------------------------SCEECC--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccCC---------------------------------------CcEEEe--ccCCHHHHHHHHHHHHHH
Confidence 778889999886521 235655 567999999999999987
Q ss_pred Hh
Q psy16512 495 FL 496 (815)
Q Consensus 495 ~~ 496 (815)
+.
T Consensus 428 l~ 429 (434)
T 2epj_A 428 LK 429 (434)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-15 Score=166.54 Aligned_cols=333 Identities=13% Similarity=0.123 Sum_probs=197.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecC
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTS 131 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~ 131 (815)
++..|+|..+. +.-++.+.+++.+++....+.+.... ....+. .+++.+.++++++...+. |+|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l----~~~la~~l~~~~~~~~~~--v~f~~ 134 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENF----VEKLRESLLSVAPKGMSQ--LITMA 134 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTH----HHHHHHTGGGGCCTTCCE--EEEES
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHH----HHHHHHHHHHhCCCCcCE--EEEeC
Confidence 34567776432 23478888888765432211121111 111222 444555566666544554 99999
Q ss_pred CchhhHHHHHhhhc-------cC-----------------CC---c-EEEecCCCcc-hhhHHHHhhc-----cc-----
Q psy16512 132 GATSAIKTVSEYFE-------FN-----------------EG---S-FIYLTDNHTS-VLGMRELVKT-----NQ----- 172 (815)
Q Consensus 132 g~t~al~~~~~al~-------~~-----------------~g---d-vv~~~~~h~s-~~~~~~~~~~-----~g----- 172 (815)
|+++|+..++..+. .. +| + ||.....|.. .......... .+
T Consensus 135 sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~ 214 (472)
T 1ohv_A 135 CGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD 214 (472)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCC
T ss_pred CchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCC
Confidence 99999999997762 01 35 5 7777755444 4333333221 11
Q ss_pred --eEEcCc-----h------h---hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhcccc
Q psy16512 173 --IYSFSV-----D------D---ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVF 232 (815)
Q Consensus 173 --~v~~~~-----~------~---~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~ 232 (815)
.+++.. . + ..+++.++++|+... ....++++|++..++|++|.+.| +++|.++|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~---- 289 (472)
T 1ohv_A 215 WPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYR-KKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISR---- 289 (472)
T ss_dssp CCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHH----
T ss_pred CcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHH----
Confidence 112210 0 0 124455555443100 00116899999999999999887 888999999
Q ss_pred ccccccCCCCeEEEEecccc-cCCCC--CCCCCCC----CcEEEEccccc-cccCCcceEEEEecccccccCcccccCce
Q psy16512 233 KKHFKCSRSNCFVLLDAATY-CGSNM--LDLKQHQ----PDFISISFYKM-FGYPTGLGALIVKQKSAHVLNKTFYGGGT 304 (815)
Q Consensus 233 ~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~~~~----~D~vv~S~~K~-~g~p~G~G~l~~~~~~~~~l~~~~~g~~~ 304 (815)
++|+++|+|+++. +|... +....++ +|++ |++|. ++ | |+++ ++++. .+.+..
T Consensus 290 -------~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~---G-G~~~-~~~~~-~~~~~~----- 349 (472)
T 1ohv_A 290 -------KHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT---G-GFFH-KEEFR-PNAPYR----- 349 (472)
T ss_dssp -------HTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS---E-EEEE-CGGGS-CSSSSS-----
T ss_pred -------HhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc---C-CccC-chhhc-cccccc-----
Confidence 8999999999987 44321 2333333 7876 56698 45 3 6655 44431 111110
Q ss_pred EEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCC
Q psy16512 305 VKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHD 383 (815)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~ 383 (815)
.+...+.|.++++++.++++.+.+. ...++.+++++++.+.|+++.. +.|. +..+
T Consensus 350 -------------------~~~T~~~~~~~~aaa~aal~~~~~~-~~~~~~~~~~~~l~~~L~~l~~--~~~~~v~~~-- 405 (472)
T 1ohv_A 350 -------------------IFNTWLGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGLLDLQA--RYPQFISRV-- 405 (472)
T ss_dssp -------------------SCCSSSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHH--HCTTTCEEE--
T ss_pred -------------------ccCccCccHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHh--hCCCcEEee--
Confidence 0111234677777888888887652 2238889999999999877610 0021 2211
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
...+.++.|.+.+. .....+.+.|.++||.+.++.
T Consensus 406 ------~~~g~~~~~~~~~~----~~~~~~~~~l~~~Gv~~~~~g----------------------------------- 440 (472)
T 1ohv_A 406 ------RGRGTFCSFDTPDE----SIRNKLISIARNKGVMLGGCG----------------------------------- 440 (472)
T ss_dssp ------EEETTEEEEECSSH----HHHHHHHHHHHHTTEECEEET-----------------------------------
T ss_pred ------cCCceEEEEEeCCh----hHHHHHHHHHHHCCeEEecCC-----------------------------------
Confidence 12367777766421 112357777778999886520
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.++||+++++.+|++||++++++|++++.
T Consensus 441 ----~~~iRi~~~~~~t~e~i~~~~~~l~~~l~ 469 (472)
T 1ohv_A 441 ----DKSIRFRPTLVFRDHHAHLFLNIFSDILA 469 (472)
T ss_dssp ----TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-15 Score=168.79 Aligned_cols=328 Identities=13% Similarity=0.071 Sum_probs=198.4
Q ss_pred hhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+. +..++.+.+++.+++.... +.. ..... ..+++++++++++ .++. |+|++|++
T Consensus 51 g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~-~~~~~----~~~l~~~l~~~~~-~~~~--v~~~~~g~ 118 (424)
T 2e7u_A 51 GNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL----TFG-APSPL----EVALAKKVKRAYP-FVDL--VRFVNSGT 118 (424)
T ss_dssp CCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS----CCS-SCCHH----HHHHHHHHHHHCT-TCCE--EEEESSHH
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCC----CCC-CCCHH----HHHHHHHHHHhCC-CCCE--EEEeCCHH
Confidence 3456665532 2356888888887775421 111 11223 6788899999986 4554 99999999
Q ss_pred hhHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhh----------ccc--------eEEcCchhhhcchhhhhhhh
Q psy16512 135 SAIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVK----------TNQ--------IYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 135 ~al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~----------~~g--------~v~~~~~~~~~~~~~~~~l~ 192 (815)
+|+..++.. +. .++++|+....|+.... ...... ..| .+.+.. .+++.++++++
T Consensus 119 ea~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~---~d~~~le~~l~ 194 (424)
T 2e7u_A 119 EATMSALRLARGYT-GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY---NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC---CCHHHHHHHHH
Confidence 999999885 54 55557777766554322 111110 001 122211 24445554332
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--C---CCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--L---DLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--~---dl~~~ 263 (815)
...+++++|+++..++++|.+.| +++|.++ + ++|+++|+|+++. |... . +....
T Consensus 195 ----~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~-----------~~g~~lI~DEv~~-g~~~g~~~~~~~~~~ 257 (424)
T 2e7u_A 195 ----RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-K-----------AYGVLLIADEVMT-GFRLAFGGATELLGL 257 (424)
T ss_dssp ----HHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-G-----------GGTCEEEEECTTT-TTTSSTTHHHHHHTC
T ss_pred ----hCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-H-----------HcCCEEEEecCcc-ccccchhHHHHHhCC
Confidence 11135677777766666999887 8888888 8 8999999999987 3211 0 01112
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.+|++ |++|++++.-.+|++++++++++.+.+.. . . ......+.|..++.++.++++
T Consensus 258 ~~di~--s~sK~l~~G~~~G~~~~~~~~~~~~~~~~--~-~------------------~~~~t~~~~~~~~aaa~aal~ 314 (424)
T 2e7u_A 258 KPDLV--TLGKILGGGLPAAAYAGRREIMEKVAPLG--P-V------------------YQAGTLSGNPLAMAAGLATLE 314 (424)
T ss_dssp CCSEE--EECGGGGTTSSCEEEEECHHHHTTBTTTS--S-B------------------CCCCTTCSCHHHHHHHHHHHH
T ss_pred Ccchh--hhhhhhhCCcceEEEEEcHHHHhhhcccC--C-c------------------ccCCCCCCCHHHHHHHHHHHH
Confidence 47865 78899993223899999988776654310 0 0 001122456677778888888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHH
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQ 414 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~ 414 (815)
.+.......++..++++++.+.|+++.... +....+ ...++++.+.+..... .......+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~--------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (424)
T 2e7u_A 315 LLEENPGYYAYLEDLGARLEAGLKEVLKEK--GLPHTV--------NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFF 384 (424)
T ss_dssp HHHHCTHHHHHHHHHHHHHHHHHHHHHHHT--TCCCEE--------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhC--CCceEE--------EeeceEEEEEEeCCCCcchhhhcccCHHHHHHHH
Confidence 776532233888889999999887751000 111111 1236788887753110 001123577
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.|.++||.++++.. ..+|++ ...+++++++++++|+++
T Consensus 385 ~~l~~~Gv~v~~~~~---------------------------------------~~~~~~--~~~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 385 HGLLDRGIYWPPSNF---------------------------------------EAAFLS--VAHREEDVEKTLEALRKA 423 (424)
T ss_dssp HHHHTTTEECCSSSS---------------------------------------SCEECC--TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeccCC---------------------------------------CceEee--ccCCHHHHHHHHHHHHHh
Confidence 777789999986521 236665 567999999999999875
Q ss_pred H
Q psy16512 495 F 495 (815)
Q Consensus 495 ~ 495 (815)
+
T Consensus 424 l 424 (424)
T 2e7u_A 424 L 424 (424)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-15 Score=168.22 Aligned_cols=327 Identities=13% Similarity=0.065 Sum_probs=194.6
Q ss_pred hhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
..|+|.... +..++.+.+++.+.+.... +. ....+. .+++.+++++.++ +.+. |+|++|+++
T Consensus 57 ~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~----~~-~~~~~~----~~~la~~l~~~~~-~~~~--v~~~~gg~e 124 (453)
T 2cy8_A 57 NVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV----QY-AASHPL----EVRWAERIVAAFP-SIRK--LRFTGSGTE 124 (453)
T ss_dssp CEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC----SS-CSSCHH----HHHHHHHHHHHCT-TCSE--EEEESCHHH
T ss_pred CEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC----CC-CCCCHH----HHHHHHHHHhhCC-CCCE--EEEeCCHHH
Confidence 456665432 2356788888877765321 11 112223 5677778888776 4554 999999999
Q ss_pred hHHHHHhh---hccCCCcEEEecCCCcchhh-HHHHhhc-------cc--------eEEcCchhhhcchhhhhhhhhhhh
Q psy16512 136 AIKTVSEY---FEFNEGSFIYLTDNHTSVLG-MRELVKT-------NQ--------IYSFSVDDARNMLNEFKESQENVE 196 (815)
Q Consensus 136 al~~~~~a---l~~~~gdvv~~~~~h~s~~~-~~~~~~~-------~g--------~v~~~~~~~~~~~~~~~~l~~~~~ 196 (815)
|+.+++.+ +. +++++|+....|+.... ....... .| .+.+.. .+++.++++++
T Consensus 125 A~~~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~---- 196 (453)
T 2cy8_A 125 TTLLALRVARAFT-GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP---DDIEGMREVFA---- 196 (453)
T ss_dssp HHHHHHHHHHHHH-CCCEEEEECC----------------------------CGGGEEEECT---TCHHHHHHHHH----
T ss_pred HHHHHHHHHHHhh-CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC---CCHHHHHHHHH----
Confidence 99999988 65 55667777765543222 1111100 11 111111 24455555442
Q ss_pred hcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC------CCCCCCc
Q psy16512 197 NMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD------LKQHQPD 266 (815)
Q Consensus 197 ~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d------l~~~~~D 266 (815)
...+++++|+++.++|+||.+.| +++|.++|+ +||+++|+|+++. |. ... .....+|
T Consensus 197 ~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~-----------~~g~~lI~DEv~~-g~-~~g~~~~~~~~~~~~d 263 (453)
T 2cy8_A 197 NHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELAR-----------QYGALFILDEVIS-GF-RVGNHGMQALLDVQPD 263 (453)
T ss_dssp HHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHH-----------HTTCEEEEECTTT-TT-TTCTTHHHHHHTCCCS
T ss_pred hcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHH-----------HcCCEEEEecCcc-cc-ccCchhhhHHhCCCCc
Confidence 11135788888888888999888 888999999 8999999999987 33 111 0123468
Q ss_pred EEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH-H
Q psy16512 267 FISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT-M 345 (815)
Q Consensus 267 ~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~-l 345 (815)
++ |++|++++...+|++++++++++.+.+...+.. ......+.|..+.+++.++++. +
T Consensus 264 i~--s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~-------------------~~~~t~~~n~~~~aa~~aal~~~~ 322 (453)
T 2cy8_A 264 LT--CLAKASAGGLPGGILGGREDVMGVLSRGSDRKV-------------------LHQGTFTGNPITAAAAIAAIDTIL 322 (453)
T ss_dssp EE--EEEGGGGTTSSCEEEEECHHHHTTSSSCC----------------------------CCCCHHHHHHHHHHHHHHH
T ss_pred EE--EEChhhhCCcceEEEechHHHHHHhccccCCCc-------------------eeCCCCCCCHHHHHHHHHHHHHHh
Confidence 65 778999842248999999887766543100000 0011224567777777788887 6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec-----C-------CC---CccCH
Q psy16512 346 EKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH-----K-------DG---TYYGY 410 (815)
Q Consensus 346 ~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~-----~-------~~---~~~~~ 410 (815)
. ....++.+++++++.+.|+++... .+....+. ..+.++.+.+.. . +. .....
T Consensus 323 -~-~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~--------~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (453)
T 2cy8_A 323 -E-DDVCAKINDLGQFAREAMNHLFAR--KGLNWLAY--------GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI 390 (453)
T ss_dssp -H-TTHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEE--------CCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHH
T ss_pred -h-hhHHHHHHHHHHHHHHHHHHHHhh--CCCcEEEE--------EeeeEEEEEEeccccccccccccccccccccHHHH
Confidence 2 223388888999999888765100 01111121 236788888763 1 00 00112
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSF 490 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~ 490 (815)
.++.+.|.++||.++++ +.+|++ ...+++++++++++
T Consensus 391 ~~l~~~l~~~Gv~v~~~-----------------------------------------~~~~l~--~~~t~~~i~~~l~~ 427 (453)
T 2cy8_A 391 AAMRMALILEGVDIGGR-----------------------------------------GSVFLS--AQHEREHVEHLVTT 427 (453)
T ss_dssp HHHHHHHHHTTEECBTT-----------------------------------------TEEECC--TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEeCC-----------------------------------------CCEEee--ccCCHHHHHHHHHH
Confidence 35777777889988421 236665 56799999999999
Q ss_pred HHHHHhh
Q psy16512 491 LNQYFLQ 497 (815)
Q Consensus 491 L~~~~~~ 497 (815)
|++++.+
T Consensus 428 l~~~l~~ 434 (453)
T 2cy8_A 428 FDRVLDR 434 (453)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=165.95 Aligned_cols=334 Identities=13% Similarity=0.053 Sum_probs=196.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc-CC--CCCceeEEecCCchhhHHH
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF-NT--DSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~-g~--~~~~~~iv~t~g~t~al~~ 139 (815)
+|.|..+.++..+.|.++....+... . .+. +..... +.++|+.+++++ |- +.+....+-|.|+|.|+..
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~-~--~~~-Y~p~~G----~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~ 124 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDMN-L--DYE-YLPISG----YQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSL 124 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHTT-C--CCC-CCCTTC----CHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcCC-C--CCC-CCCcCC----hHHHHHHHHHHhcCCCccccccceeeecCchHHHHH
Confidence 66777777777777777664433321 1 111 222233 678888888864 32 2222234558899988876
Q ss_pred HHhhhc---cCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCch--hhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 140 VSEYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVD--DARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 140 ~~~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~--~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++..+. ..+|| |+++++.++++..+.+.++... ..+.... ...+.+...+.+. ...+++++++++.++
T Consensus 125 a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~----~~~~~~~vll~~~p~ 200 (420)
T 4h51_A 125 GAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDIL----AAPDGSVFILHQCAH 200 (420)
T ss_dssp HHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHH----HSCSSCEEEEESSSC
T ss_pred HHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHh----ccCCCcEEEEeCCCC
Confidence 665443 17899 9999999998887777776543 2222222 2334444443332 345678899999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC-CCCCC---------CCCCCCcEEEEccccccccCCc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SNMLD---------LKQHQPDFISISFYKMFGYPTG 281 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~~~d---------l~~~~~D~vv~S~~K~~g~p~G 281 (815)
||||..++.+++.++++ .|++++++++.|.++.-- ....+ ......-+++.||+|.|+ .+|
T Consensus 201 NPtG~~~~~~~~~~i~~--------~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G 271 (420)
T 4h51_A 201 NPTGVDPSQEQWNEIAS--------LMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG-LYS 271 (420)
T ss_dssp TTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-CGG
T ss_pred CCCCCCCCHHHHHHHHH--------HHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc-ccc
Confidence 99999999887666655 344899999999886421 11000 011123477889999999 667
Q ss_pred --ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH--H----HhhhhhH-
Q psy16512 282 --LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT--M----EKKRKSF- 352 (815)
Q Consensus 282 --~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~--l----~~~~~~~- 352 (815)
+|++++..+..+......... ....+....+++..+..++...+.. + ...-..+
T Consensus 272 ~RvG~~~~~~~~~~~~~~~~~~l-----------------~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~ 334 (420)
T 4h51_A 272 ERAGTLSLLLKDKTKRADVKSVM-----------------DSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMA 334 (420)
T ss_dssp GCEEEEEEECSCHHHHHHHHHHH-----------------HHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCHHHHHHHHHHH-----------------HHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 899998776544321111000 0001222334555555555444431 1 1111223
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 353 TNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 353 ~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
+++.+.++.+.+.|.++. .++ +..+.+ +++++++ .+. +.. ..+.|.++||.+.++
T Consensus 335 ~r~~~~R~~l~~~L~~~g----~~~~~~~i~~--------q~GmF~~--~gl-----s~e-~v~~L~e~~Vy~~~~---- 390 (420)
T 4h51_A 335 ERIRTMRRTVYDELLRLQ----TPGSWEHVIN--------QIGMFSF--LGL-----SKA-QCEYCQNHNIFITVS---- 390 (420)
T ss_dssp HHHHHHHHHHHHHHHHTT----CSSCCTHHHH--------CCSSEEE--CCC-----CHH-HHHHHHHTTEECCTT----
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCCCeecC--------CCceEEe--cCc-----CHH-HHHHHHhCCEEEcCC----
Confidence 778888999999998761 111 111211 2344333 222 222 346778899876432
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
| |||+.. -+++.|++++++|.+++++-
T Consensus 391 -------------------------------------g--Ris~Ag-l~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 391 -------------------------------------G--RANMAG-LTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp -------------------------------------C--EEEGGG-CCHHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------C--EEEecc-CCHHHHHHHHHHHHHHHHHh
Confidence 3 999864 36899999999999988653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-15 Score=164.39 Aligned_cols=168 Identities=11% Similarity=-0.032 Sum_probs=121.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC---CCc-EEEecCCCcchhhHHHHhhccc-eEEc---Cc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN---EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~---~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~ 178 (815)
.+.+..++.+++|.+.. +..++++|+|.++.+++.+.... +++ +|++...|.|+.....+++... +++. +.
T Consensus 100 e~~~~~~~~~~lGlp~~-~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~ 178 (450)
T 3bc8_A 100 TNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 178 (450)
T ss_dssp HHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHhCCCCCC-ceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCc
Confidence 66788899999998654 35689999985555454444312 266 8889999999998888876554 3322 44
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML 258 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~ 258 (815)
...++++.++++|++ .....+.+|+.+..++.+|.+.|+++|+++|+ ++|+++|||+||+.-....
T Consensus 179 ~~~id~~~le~aI~~---~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~-----------~~gi~l~VD~A~G~~~~~~ 244 (450)
T 3bc8_A 179 ELRTDLKAVEAKIQE---LGPEHILCLHSTTACFAPRVPDRLEELAVICA-----------NYDIPHVVNNAYGLQSSKC 244 (450)
T ss_dssp EEECCHHHHHHHHHH---HCGGGEEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHH
T ss_pred cCCcCHHHHHHHHHh---cCCCCEEEEEEECCcCCCceecCHHHHHHHHH-----------HCCCeEEEECCCchhhhhh
Confidence 456788888887642 11123455555555555679999999999999 8999999999998643211
Q ss_pred -CC--C--C-CCCcEEEEccccccccCCcceEEEEec
Q psy16512 259 -DL--K--Q-HQPDFISISFYKMFGYPTGLGALIVKQ 289 (815)
Q Consensus 259 -dl--~--~-~~~D~vv~S~~K~~g~p~G~G~l~~~~ 289 (815)
++ . . .++|+++.|.|||++.|.|.+++++++
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd 281 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN 281 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESC
T ss_pred HhHHHHHhcccCCCEEEECCccCCCchhccEEEEecC
Confidence 01 1 1 268999999999999999999999864
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=148.91 Aligned_cols=335 Identities=13% Similarity=0.109 Sum_probs=205.6
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHH-HHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhcc
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEID-QMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~~ 146 (815)
....++.+++++..-+.+. ..+.|...+...-....+++ -+.++.+++||++...|.| |-..+++.|+..+..++.
T Consensus 63 EN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All- 141 (490)
T 3ou5_A 63 ENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL- 141 (490)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-
T ss_pred CCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc-
Confidence 4456778888776655543 23456654222211122233 4677888999999875433 445677889999999999
Q ss_pred CCCc-EEEecCCCcchh--hH-H--HHhhccc------eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 147 NEGS-FIYLTDNHTSVL--GM-R--ELVKTNQ------IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~--~~-~--~~~~~~g------~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
+||| |+..+..|...+ +. . ......| .+.+++ ++.+|.+.+++... ..++++|+.-.-.
T Consensus 142 ~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~------~~kPklIi~G~Sa-- 213 (490)
T 3ou5_A 142 QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR------LFRPRLIIAGTSA-- 213 (490)
T ss_dssp C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHH------HHCCSEEEECCSS--
T ss_pred CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHh------hcCCCeEEECCcc--
Confidence 9999 665554433211 11 0 0111111 223443 35678888776432 2468999986533
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEe
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVK 288 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~ 288 (815)
.-..+|.+++.++|+ +.|+++++|.+|.+|. .|-++. .+|++++|.||+|.+|.| |+++.+
T Consensus 214 Y~r~id~~~~reIAd-----------~vGA~Lm~DmAHiaGLVA~g~~psP~~--~ADvVTtTTHKTLrGPrG-G~Il~~ 279 (490)
T 3ou5_A 214 YARLIDYARMREVCD-----------EVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYR 279 (490)
T ss_dssp CCSCCCHHHHHHHHH-----------HHTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSSTTCSCSC-EEEEEE
T ss_pred CccccCHHHHHHHHh-----------hcccEEEechhhhhhhhcccccCCccc--cceEEeccccccccCCCc-eEEEec
Confidence 346789999999999 8899999999998753 333332 379999999999998985 788877
Q ss_pred ccccc---------------ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH-HhhhhhH
Q psy16512 289 QKSAH---------------VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM-EKKRKSF 352 (815)
Q Consensus 289 ~~~~~---------------~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l-~~~~~~~ 352 (815)
++... ++....|-| .-|.+..+.++|...++... ...+..+
T Consensus 280 ~~~~~~~~k~~~~~~~~~~kkin~aVFPg-----------------------~qggp~~h~IAAkAVaf~Ea~~p~fk~Y 336 (490)
T 3ou5_A 280 KGVKAVDPKTGREIPYTFEDRINFAVFPS-----------------------LQGGPHNHAIAAVAVALKQACTPMFREY 336 (490)
T ss_dssp CSEEEECC--CCEEECCCHHHHHHHHTTT-----------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHH
T ss_pred cccccccccccchhHHHHHHHHHhhcCcc-----------------------ccccchHHHHHHHHHHHHHHHhHhHHHH
Confidence 75321 111111111 12456667777777777653 3344455
Q ss_pred -HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCC
Q psy16512 353 -TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCN 431 (815)
Q Consensus 353 -~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~ 431 (815)
+++.++++.|.+.|.+. |+++++... ..+++.+.+... .++..++.+.|.+.||.+..-....
T Consensus 337 a~qVv~NAkaLA~~L~~~-------G~~vvsGgT------dnHlvLvDl~~~---g~tG~~ae~~Le~agItvNkN~iP~ 400 (490)
T 3ou5_A 337 SLQVLKNARAMADALLER-------GYSLVSGGT------DNHLVLVDLRPK---GLDGARAERVLELVSITANKNTCPG 400 (490)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCEEGGGSC------SSSEEEEECGGG---TCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHHHHHHHHHHHHHHHhC-------CCeeecCCC------CceEEEEecccc---CCCHHHHHHHHHHcCcEECCCCCCC
Confidence 88999999999999987 899985432 357777776532 1344568899999999875321110
Q ss_pred chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHh
Q psy16512 432 PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 432 ~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~ 496 (815)
| -....++.|||..... -.++|++.+.+.|.+.+.
T Consensus 401 -----------------------------D-~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 401 -----------------------------D-RSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp -----------------------------C-CCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------------C-CCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 0 0011246799986532 367999999999988765
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-13 Score=144.29 Aligned_cols=317 Identities=12% Similarity=0.020 Sum_probs=188.8
Q ss_pred HHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccC--CC-c-EEEecCCCcchhhHHHHhhccc-eEEc---Cchhh
Q psy16512 110 MRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFN--EG-S-FIYLTDNHTSVLGMRELVKTNQ-IYSF---SVDDA 181 (815)
Q Consensus 110 ~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~--~g-d-vv~~~~~h~s~~~~~~~~~~~g-~v~~---~~~~~ 181 (815)
+.++|+++ |.+... ..++++|+|.++.+++.+.... +| + ||++...|-|++....+++... +++. +....
T Consensus 122 ~ld~L~~~-G~~~~~-~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~ 199 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVA-NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELR 199 (501)
T ss_dssp HHHHHHHT-TCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEE
T ss_pred HHHHHHHc-CCCCCC-cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccC
Confidence 44445444 887543 5788999997777776666522 23 6 9999999999998888876665 3332 22345
Q ss_pred hcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC--
Q psy16512 182 RNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-- 258 (815)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-- 258 (815)
++++.++++|++ . .... .+|+.+..+|..|.+.|+++|+++|+ ++|++++||+||++-....
T Consensus 200 id~e~le~aI~e---~-ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch-----------~~gIpllVDeAhGah~~~~~~ 264 (501)
T 3hl2_A 200 TDLKAVEAKVQE---L-GPDCILCIHSTTSCFAPRVPDRLEELAVICA-----------NYDIPHIVNNAYGVQSSKCMH 264 (501)
T ss_dssp ECHHHHHHHHHH---H-CGGGEEEEEEECSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTCTTCHHHHH
T ss_pred CCHHHHHHHHHh---c-CCCcEEEEEecCCCCCCcccccHHHHHHHHH-----------HcCCeEEEeCcchhhhhhhhh
Confidence 677777776641 1 2233 34444444444567799999999999 8999999999987643111
Q ss_pred ---CCCCCC-CcEEEEccccccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChh
Q psy16512 259 ---DLKQHQ-PDFISISFYKMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYL 333 (815)
Q Consensus 259 ---dl~~~~-~D~vv~S~~K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~ 333 (815)
..-.++ +|+++.|.||++..|.|.|+++.++ +.++.+...+ +|+.+..
T Consensus 265 lp~sA~~~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~y---------------------------PGr~S~S 317 (501)
T 3hl2_A 265 LIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMY---------------------------PGRASAS 317 (501)
T ss_dssp HHHHHHHHSCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTS---------------------------CSCBCSH
T ss_pred hHHHHHhcCCCcEEEecccccceeecCceEEEeCCHHHHHHHHHhC---------------------------CCCCCCc
Confidence 111235 9999999999988787866666665 3444432222 2333333
Q ss_pred HHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC-ccCH
Q psy16512 334 AIISLKYGFDTMEKKRK-SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT-YYGY 410 (815)
Q Consensus 334 ~~~al~~al~~l~~~~~-~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~-~~~~ 410 (815)
..+.+..++..+...+. .+ ++..+++++|.+.|+++..-. +-+++.... ..--+++.+...... .-..
T Consensus 318 psldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~---ge~ll~~~~------n~is~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 318 PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY---NERLLHTPH------NPISLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCCBCCCTT------CSSEEEEECTTSCTTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhhcCCCC------CceeEEEecccccccccccH
Confidence 44434344444433322 22 888999999999998873211 223332221 122334444332111 1112
Q ss_pred HHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc----ccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD----IIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~----~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
..+-.+|-.++|.-.-...+ +..+ .+||-++. -.+.++..|+-+....-.+.+|||.
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~--~~~~-----------------~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~ 449 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPL--GSMQ-----------------TVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDL 449 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECT--TCCE-----------------EETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeecC--CCce-----------------EECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHH
Confidence 34666676666541110000 0000 11111111 1235667899999888899999999
Q ss_pred HHHHHHHHHhhc
Q psy16512 487 FLSFLNQYFLQQ 498 (815)
Q Consensus 487 lv~~L~~~~~~~ 498 (815)
|++.|++++..-
T Consensus 450 ~~~~l~~~~~~~ 461 (501)
T 3hl2_A 450 FIKRLDRCLKAV 461 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987543
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.3e-14 Score=157.15 Aligned_cols=333 Identities=9% Similarity=-0.005 Sum_probs=194.6
Q ss_pred cchhhhhhhhccc------ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGAG------VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~~------~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+.- --++.+.+++.+++.... + ....... ..++.++|+++++ ..+. ++|+++
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~----~-~~~~~~~----~~~Lae~L~~~~p-~~~~--v~~~nS 164 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL----N-LSTQTEN----EALFAEAVCDRFP-SIDL--VRFTNS 164 (465)
Confidence 3456677765422 235778888777655311 0 0111122 6678889999985 3344 999999
Q ss_pred chhhHHHHHhhhcc-CCCc-EEEecCCCcc-hhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 133 ATSAIKTVSEYFEF-NEGS-FIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 133 ~t~al~~~~~al~~-~~gd-vv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+++|+..++..+.. ..++ ||.....|.. ......-....| .+.++. .+++.++++++ ...+++++|
T Consensus 165 GseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~---~d~~~l~~~l~----~~~~~~aav 237 (465)
T 2yky_A 165 GTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY---NDVEGTADLLK----RHGHDCAAI 237 (465)
Confidence 99999999887531 2334 7776655433 322220000111 111111 24445554332 112568899
Q ss_pred EEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCC--CCCCC--CCCcEEEEccccccc
Q psy16512 206 VYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM--LDLKQ--HQPDFISISFYKMFG 277 (815)
Q Consensus 206 ~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~--~dl~~--~~~D~vv~S~~K~~g 277 (815)
++..+++++|.+.| +++|.++|+ ++|+++|+|+++. +... ..... ..+|++ |++|++|
T Consensus 238 i~epv~~~~G~~~~~~~~l~~l~~l~~-----------~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg 303 (465)
T 2yky_A 238 LVEPMLGAGGCVPAERAFLDLLRAEAS-----------RCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIG 303 (465)
Confidence 99887777998887 778888888 9999999999998 4211 11111 236654 7889999
Q ss_pred cCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHH
Q psy16512 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFE 357 (815)
Q Consensus 278 ~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~ 357 (815)
+.-.+|++++++++++.+.+...+... .....+.|.++.+++.++++.+.+. ...++..+
T Consensus 304 ~G~piG~v~~~~~i~~~l~~~~~g~~~-------------------~~~T~~~npla~aAa~aaL~~l~~~-~~~~~~~~ 363 (465)
T 2yky_A 304 GGMSFGAFGGRRDLMERFDPARDGAFA-------------------HAGTFNNNILTMSAGHAALTQIYTR-QAASDLSA 363 (465)
Confidence 311279999999887766441000000 0011134556666777778777553 22388888
Q ss_pred HHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC---------CccCHHHHHHhhhcCCcEeccCc
Q psy16512 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG---------TYYGYSEVQNLANLKKIQLRTGC 428 (815)
Q Consensus 358 l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~---------~~~~~~~v~~~l~~~gI~v~~g~ 428 (815)
+.+++.+.|+++.. ...+... ....+.++.+.+.+... ..-....+.+.|.++||.+.++.
T Consensus 364 ~~~~l~~~L~~~~~-----~~~~~~~-----v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~ 433 (465)
T 2yky_A 364 SGDRFRANLNRIAV-----ENQAPLQ-----FTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRG 433 (465)
Confidence 88888888877510 1111111 12347788877653110 00012246667778999887542
Q ss_pred cCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 429 HCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 429 ~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+ +. + ++..|++||++++++|++++.+
T Consensus 434 ~---------------------------------------~~--~--s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 434 M---------------------------------------YA--L--SLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 1 11 3 3456899999999999987643
|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=126.38 Aligned_cols=159 Identities=10% Similarity=0.058 Sum_probs=114.1
Q ss_pred CccEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEE-EeCCCceEEeccccccccccceeecCCCeEEEEeCCCCe
Q psy16512 531 KENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMI-ITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGS 609 (815)
Q Consensus 531 ~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~-~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~ 609 (815)
..++|.+||++|.|+...+.++ ++.++..||++||.+.. ....|+ . .. .|++.
T Consensus 8 ~~g~v~~v~~~~~~g~~k~~v~-~~~l~~~Gl~GD~~~g~~~~hggr------~--------~~----------~p~gt- 61 (195)
T 1oru_A 8 MTAKAEGLYIADTKSFVTKQMD-KLDFDYGGIPGDLHFGLTKKAGAR------E--------PM----------FSRGT- 61 (195)
T ss_dssp EEEEEEEEEECCSSCSSCEEES-EEEEBTTBSTTSTTCSSEEECCTT------S--------TT----------SCTTC-
T ss_pred ceeEEEEEEeCCCCCccceecC-cEEEecCCcCCccccCcccCCCcc------c--------cc----------CCccc-
Confidence 3578999999999999999999 99999999999996532 222221 0 00 11110
Q ss_pred eEEEecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCCCcccccccccceeeecHHhHHHHH
Q psy16512 610 TVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITLPSIQAQL 689 (815)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~~~~~~f~d~~p~~l~s~~Sl~~l~ 689 (815)
...+..+++|++.+|++.++
T Consensus 62 ------------------------------------------------------------~~~~~r~V~l~~~e~~~~~~ 81 (195)
T 1oru_A 62 ------------------------------------------------------------EIFNRRQISIVSIEECNEIA 81 (195)
T ss_dssp ------------------------------------------------------------EEECCCCEEEEEHHHHHHHH
T ss_pred ------------------------------------------------------------cCCCCceEEECCHHHHHHHH
Confidence 01234569999999999999
Q ss_pred HHhhhhcCcccccccccceEEEcCCCCcc-cCCCcceEEEecCCCC-eEEEecccCCCcccc--ccCccCCCCCCChhHH
Q psy16512 690 ENLNAIFELENFVNRFRSNFVVSGQFEAN-AENDWDQVLIETNDGL-LSFQVTSQCTRCQYI--YIDQETALNTDVPLGE 765 (815)
Q Consensus 690 ~~l~~~~~~~~~~~rFRpNivi~~~~~~~-~Ed~w~~i~Ig~~~~~-~~~~~~~~~~RC~~~--~vd~~tg~~~~~~l~~ 765 (815)
+.++.+ .+++.|||+||+++|. +.+ +.+-|++++|| + +.|+|+.+|.||..+ ++++.++. .+...+.
T Consensus 82 ~~~g~~---~l~~g~fgeNl~v~Gi-~~~~~l~iG~~l~iG----~~a~leVt~~~~pC~~~~~~i~~~~~~-~~g~~~~ 152 (195)
T 1oru_A 82 LKMGVP---RILPEWLGANVAVSGM-PDLTSLKEGSRIIFP----SGAALLCEGENDPCIQPGEVIQSYYPD-QPKLASA 152 (195)
T ss_dssp HHHTCS---CCCGGGGTCSEEEESC-TTGGGCCTTCEEECT----TSCEEEEEEECCCCHHHHHHHHHHSTT-STTHHHH
T ss_pred HHcCCC---CCCcccccCCEEEeCC-CChhhCCCCCEEEEC----CCEEEEEeeccCCCCCCccccchhccc-ccchHHH
Confidence 987531 3789999999999998 444 44457999999 7 999999999999985 56765532 3456666
Q ss_pred HHhccccccccCccccccccccc
Q psy16512 766 YQTRNFSTVSLNVKEFFNNLEKT 788 (815)
Q Consensus 766 l~~~r~~~~~~~~~~~~~~~~~~ 788 (815)
+.+... ..+|+|+-+...|
T Consensus 153 ~~~~~~----~r~G~~~rVl~~G 171 (195)
T 1oru_A 153 FVRHAL----GIRGIVCIVERPG 171 (195)
T ss_dssp HHHHST----TSSCEEEEEEECE
T ss_pred HHhhcc----CCccEEEEEecCc
Confidence 665222 1457777776543
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-10 Score=126.43 Aligned_cols=348 Identities=12% Similarity=0.058 Sum_probs=202.4
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++.... +........+. ..++.++|.+++..+.. ..++|++++
T Consensus 62 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~--~~~~~~~~~~~----~~~lae~L~~~~p~~~~-~~v~f~~sG 134 (456)
T 4atq_A 62 DGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT--HTCFMVTPYEG----YVAVTEQLNRLTPGDHA-KRTVLFNSG 134 (456)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS--CCTTTTSCCHH----HHHHHHHHHHHSSCSSC-EEEEEESSH
T ss_pred CCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc--CcccCccCcHH----HHHHHHHHHHhCCCCCC-cEEEEeCCh
Confidence 44567775432 2345788888877665421 11111111122 44566778888754322 248899999
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhcc-------c-------eEEcCch------hhhcchhhhhh
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTN-------Q-------IYSFSVD------DARNMLNEFKE 190 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~-------g-------~v~~~~~------~~~~~~~~~~~ 190 (815)
|+|++.++..... .+..+|.....|.. ........... + .+|.... ...+.+.....
T Consensus 135 sEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 214 (456)
T 4atq_A 135 AEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRA 214 (456)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHH
Confidence 9999888865532 22236666554433 33322221110 1 1222110 00111222222
Q ss_pred hhhhhhhcC-CCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCCC--C--CC
Q psy16512 191 SQENVENMR-HSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSNM--L--DL 260 (815)
Q Consensus 191 l~~~~~~~~-~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~--~--dl 260 (815)
+..+..... .++.+|++.-+....|.+.| +++|.++|+ +||+++|+|+++.. |..- . ..
T Consensus 215 ~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~-----------~~gillI~DEV~tG~GRtG~~~a~e~ 283 (456)
T 4atq_A 215 ITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAK-----------EKGIVFIADEVQSGFCRTGEWFAVDH 283 (456)
T ss_dssp HHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred HHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHh-----------hcCCceEecccccccCCccccccccc
Confidence 222222222 35788999888888898877 667888888 99999999998763 2211 1 11
Q ss_pred CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
-...||+++++ |.+|+-.-+|++++++++.+.+.+...++ ..+-|..+.++..+
T Consensus 284 ~gv~PDivt~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~------------------------Tf~gnpla~aaala 337 (456)
T 4atq_A 284 EGVVPDIITMA--KGIAGGLPLSAITGRADLLDAVHPGGLGG------------------------TYGGNPVACAAALA 337 (456)
T ss_dssp TTCCCSEEEEC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCC------------------------SSSSCHHHHHHHHH
T ss_pred cCCCCchhhhh--hcccCcCCceeeEecHHHHhcccccCCCC------------------------CCCCChHHHHhhHH
Confidence 12358998775 76653222799999998876664432111 11346677777778
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcc--ccC-CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC---HHHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLS--YSN-GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG---YSEVQ 414 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~--~~~-~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~---~~~v~ 414 (815)
.++.+.+.+ -.++.+++-+++.+.|+++. ++. .+|.+.-+ ...|.++.+.+.......-+ ...+.
T Consensus 338 ~L~~i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~V--------RG~Gl~~giel~~~~~~~~~~~~~~~v~ 408 (456)
T 4atq_A 338 AIDTMEQHD-LNGRARHIEELALGKLRELAAELSAGGGSVVGDI--------RGRGAMLAIELVQPGSKEPNAELTKAVA 408 (456)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEE--------EEETTEEEEEEBCTTSCCBCHHHHHHHH
T ss_pred HHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEe--------eecceEEEEEEecCCCCCcCHHHHHHHH
Confidence 888877642 22777888888888777652 111 11222211 23478888888643221111 23466
Q ss_pred HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 415 NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 415 ~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
+.+.++|+.+... |...+.||+.+.+..|+++++++++.|++.
T Consensus 409 ~~~~~~Gvl~~~~-------------------------------------g~~~~~irl~PpL~it~~~id~~l~~l~~a 451 (456)
T 4atq_A 409 AACLKEGVIILTC-------------------------------------GTYGNVIRLLPPLVISDELLIDGLEVLAAA 451 (456)
T ss_dssp HHHHHTTEECEEE-------------------------------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEec-------------------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7778899987642 111368999999889999999999999998
Q ss_pred Hhh
Q psy16512 495 FLQ 497 (815)
Q Consensus 495 ~~~ 497 (815)
++.
T Consensus 452 l~a 454 (456)
T 4atq_A 452 IKA 454 (456)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.5e-11 Score=132.18 Aligned_cols=333 Identities=12% Similarity=0.107 Sum_probs=193.5
Q ss_pred cchhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCC
Q psy16512 59 LKDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSG 132 (815)
Q Consensus 59 ~~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g 132 (815)
.++..|+|..+. +--.+.+.+++.+++.... +... .... ..++.+.|++.+.. .+ .+.|+++
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~--~~~~---~~~~----~~~lae~l~~~~p~-~~--~v~f~~S 151 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI--NLTG---HNLL----EGRLARLICERFPQ-IE--QLRFTNS 151 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS--CCCS---EESS----HHHHHHHHHHHSTT-CS--EEEEESS
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC--CccC---CcHH----HHHHHHHHHHhCCC-CC--EEEEeCc
Confidence 345678876542 2245788888888775421 1111 1122 45677788888853 33 3999999
Q ss_pred chhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEE
Q psy16512 133 ATSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLF 205 (815)
Q Consensus 133 ~t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv 205 (815)
+|+|+..++..... .+.+||.....|.. ............ ...+..+ +.+.+++.+. ...+++.+|
T Consensus 152 GsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n---d~~~l~~~l~----~~~~~iAav 224 (454)
T 4ao9_A 152 GTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN---DAQTARAQIE----RHGPEIAVV 224 (454)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT---CHHHHHHHHH----HTGGGEEEE
T ss_pred hHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc---hHHHHHHHHh----hcCCceEEE
Confidence 99999988876542 33346666654432 221111000000 2222222 2333343332 223458899
Q ss_pred EEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC----CCCCCcEEEEccccccc
Q psy16512 206 VYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL----KQHQPDFISISFYKMFG 277 (815)
Q Consensus 206 ~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl----~~~~~D~vv~S~~K~~g 277 (815)
++..+....|.+.| +++|.++|+ ++|+++|+|+++. |..-.-. -...||+++ +.|.+|
T Consensus 225 IvEPv~g~~G~~~p~~~fL~~lr~lc~-----------~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t--~gK~lg 290 (454)
T 4ao9_A 225 LVEPMQGASGCIPGQPDFLQALRESAT-----------QVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTT--LGKYIG 290 (454)
T ss_dssp EECSEESTTTCEECCHHHHHHHHHHHH-----------HHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEE--EEGGGG
T ss_pred EeccccCCCCccCCchhhHHHHHHHHh-----------hcCCEEEEECCCc-CCCccccchhccCCCCcEEE--eccccC
Confidence 99999999999988 778889998 8999999999986 4211101 113589875 457666
Q ss_pred cCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC--CChhHHHHHHHHHHHHHhhhhhHHHH
Q psy16512 278 YPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT--VNYLAIISLKYGFDTMEKKRKSFTNA 355 (815)
Q Consensus 278 ~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt--~~~~~~~al~~al~~l~~~~~~~~~~ 355 (815)
+...+|++.+++++.+.+.+.. + ..+..+| -|..++++..++|+.+.+. ...+++
T Consensus 291 gG~Piga~~~~~ei~~~~~~~~---~-------------------~~~h~~T~~gnPla~AAala~L~~l~~~-~~~~~~ 347 (454)
T 4ao9_A 291 GGMSFGAFGGRADVMALFDPRT---G-------------------PLAHSGTFNNNVMTMAAGYAGLTKLFTP-EAAGAL 347 (454)
T ss_dssp TTSSCEEEEECHHHHGGGCTTT---C-------------------SCCCCCTTTTCHHHHHHHHHHHHHTSCH-HHHHHH
T ss_pred CCCcceeeeeHHHHHHHHhhcc---C-------------------CccccCCCCCCHHHHHHHHHHHHHHhcc-ChhHHH
Confidence 3223799999998877664321 0 0112233 3556666666777766432 122778
Q ss_pred HHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC------ccC---HHHHHHhhhcCCcEecc
Q psy16512 356 FELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT------YYG---YSEVQNLANLKKIQLRT 426 (815)
Q Consensus 356 ~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~------~~~---~~~v~~~l~~~gI~v~~ 426 (815)
.++.++|.+.|+++....+.+ ..+ ...|.++.+.+...+.. ..+ ...+...+.++||.+.+
T Consensus 348 ~~~g~~l~~~L~~l~~~~~~~-~~v---------rg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p 417 (454)
T 4ao9_A 348 AERGEALRARLNALCANEGVA-MQF---------TGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSP 417 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHTBS-CEE---------EEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCT
T ss_pred HHHHHHHHHHHHHHHhhCCCC-EEE---------eeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcC
Confidence 888888888887652100101 111 12366777766432110 011 12344556788988754
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhcCc
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~~~ 500 (815)
. +.+.+|+. .|++|||+++++|++++..-.-
T Consensus 418 ~-----------------------------------------~~~~~s~~--~T~~dId~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 418 R-----------------------------------------GFVVLSLP--LTDADIDRYVAAIGSFIGGHGA 448 (454)
T ss_dssp T-----------------------------------------CEEECCTT--CCHHHHHHHHHHHHHHHHHSGG
T ss_pred C-----------------------------------------CCEEEeCC--CCHHHHHHHHHHHHHHHHhccc
Confidence 2 44555554 5899999999999998866443
|
| >2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=117.38 Aligned_cols=46 Identities=35% Similarity=0.538 Sum_probs=43.7
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
-+||||||+.+|+|+|+|++++|.|++|+||+ ||+|+||||||++.
T Consensus 69 ~~GGdLG~~~~~~~~~~f~~a~~~l~~GeiS~------pv~t~~G~HIIkl~ 114 (115)
T 2lj4_A 69 ASGGDLGFFSSGEMMKPFEDAVRALKIGDISP------IVQTDSGLHIIKRL 114 (115)
T ss_dssp GTTSEEEEEETTSSCHHHHHHHTTSCBTCBCC------CEECSSSEEEEEEC
T ss_pred ccCCccceecCCCCCchHHHHHhcCCCCCCCC------cEEeCCeEEEEEEe
Confidence 47999999999999999999999999999998 88999999999973
|
| >3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=114.17 Aligned_cols=54 Identities=69% Similarity=1.296 Sum_probs=51.3
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|+.|++|+|.+++.||+|+||||||+++++
T Consensus 47 ~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIikv~~r 100 (101)
T 3ui4_A 47 RQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 100 (101)
T ss_dssp GGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEEEEEEE
T ss_pred hcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcccCCcEEECCEEEEEEEEee
Confidence 479999999999999999999999999999999888999999999999999875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-08 Score=112.22 Aligned_cols=345 Identities=13% Similarity=0.044 Sum_probs=199.7
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.+... ....+. ..++-++|.++...+-+. |.|++++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~-~~~~~~----~~~lAe~L~~~~p~~~~~--v~f~~sG 137 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFF-GRMSDQ----TVMLSEKLVEVSPFDSGR--VFYTNSG 137 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCT-TEEEHH----HHHHHHHHHHHSSCSSCE--EEEESSH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccc-cccCHH----HHHHHHHHHhhCCCCccE--EEEeCch
Confidence 45667776542 3345778888877776532211110 111122 445677888887655544 9999999
Q ss_pred hhhHHHHHhhhcc------CCCc--EEEecCCC-cchhhHHHHhhc-----cc-----eE--EcCch------h----h-
Q psy16512 134 TSAIKTVSEYFEF------NEGS--FIYLTDNH-TSVLGMRELVKT-----NQ-----IY--SFSVD------D----A- 181 (815)
Q Consensus 134 t~al~~~~~al~~------~~gd--vv~~~~~h-~s~~~~~~~~~~-----~g-----~v--~~~~~------~----~- 181 (815)
|+|++.++..... +++. +|.....| ............ .+ .. +.... . .
T Consensus 138 sEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 217 (473)
T 4e3q_A 138 SEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQF 217 (473)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHH
Confidence 9999988875421 2343 56555544 333332222111 11 11 11110 0 0
Q ss_pred --hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-C
Q psy16512 182 --RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-G 254 (815)
Q Consensus 182 --~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g 254 (815)
.....+++.+ .....++..+|++.-+....|.+.| +++|.++|+ ++|+++|+|+++.. |
T Consensus 218 ~~~~~~~l~~~i---~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~-----------~~gilLI~DEV~tGfG 283 (473)
T 4e3q_A 218 VARLARELEETI---QREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR-----------KYDIPVISDEVICGFG 283 (473)
T ss_dssp HHHHHHHHHHHH---HHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCCEEEECTTTSSS
T ss_pred HHHHHHHHHHHH---HhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc-----------ccceEEeccCccccCC
Confidence 0011122211 2222345788999988888898877 666888888 99999999998753 2
Q ss_pred CCC--C--CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNM--L--DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~--~--dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
-.- . ..-...||++++ .|.+++- .-+|++++++++.+.+.+.....+. .. .-...+
T Consensus 284 RtG~~fa~e~~gv~PDi~t~--~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~----------------~~-hg~T~~ 344 (473)
T 4e3q_A 284 RTGNTWGCVTYDFTPDAIIS--SKNLTAGFFPMGAVILGPELSKRLETAIEAIEE----------------FP-HGFTAS 344 (473)
T ss_dssp TTSSSCHHHHTTCCCSEEEE--CGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSC----------------CC-CCCTTT
T ss_pred cccchhHHHhcCCCCChHHh--cccccCCCCCcccccccHHHHHHhccccccccc----------------cc-cCCCCC
Confidence 211 1 111235898765 5866521 1279999999887655321100000 00 000113
Q ss_pred CChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--Cc
Q psy16512 330 VNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG--TY 407 (815)
Q Consensus 330 ~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~--~~ 407 (815)
-|..+.++..+.++.+.+. .-.++++++.++|.+.|+++.. +|.+.-+ ...|.++.+.+..... ..
T Consensus 345 Gnpla~Aaala~L~~i~~~-~l~~~~~~~g~~l~~~L~~l~~---~~~v~~v--------RG~Gl~~gielv~~~~~~~~ 412 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNE-GLAENVRRLAPRFEERLKHIAE---RPNIGEY--------RGIGFMWALEAVKDKASKTP 412 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHS-SHHHHHHHHHHHHHHHHHHHTT---STTEEEE--------EEETTEEEEEECSBTTTTBC
T ss_pred CCcchhhhhhhhhhhhccc-cHHHHHHHHHHHHHHHHHHHhc---CCCeeEE--------eecceEEEEEEecCcccccc
Confidence 3566777777777777654 1228888899999999987621 1343322 2346788887753221 11
Q ss_pred cC-----HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 408 YG-----YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 408 ~~-----~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
++ ...+.+.+.++|+.+++. .+.||++..+..|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~Gll~~~~----------------------------------------g~~i~l~PPL~it~~ 452 (473)
T 4e3q_A 413 FDGNLSVSERIANTCTDLGLICRPL----------------------------------------GQSVVLCPPFILTEA 452 (473)
T ss_dssp CCGGGCHHHHHHHHHHHTTEECEEE----------------------------------------TTEEEECCCTTCCHH
T ss_pred ccccHHHHHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCCCCCCHH
Confidence 11 234677788899987642 257999998889999
Q ss_pred HHHHHHHHHHHHHh
Q psy16512 483 DVKYFLSFLNQYFL 496 (815)
Q Consensus 483 di~~lv~~L~~~~~ 496 (815)
|+|.++++|.+.+.
T Consensus 453 eid~~~~~l~~al~ 466 (473)
T 4e3q_A 453 QMDEMFDKLEKALD 466 (473)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
|
| >3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-11 Score=110.67 Aligned_cols=47 Identities=38% Similarity=0.586 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
.+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.+
T Consensus 77 ~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~------pv~t~~G~hIi~v~E 123 (123)
T 3i6c_A 77 KARGDLGAFSRGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE 123 (123)
T ss_dssp GGTTEEEEEETTTSCHHHHHHHHHSCTTCBCS------CEEETTEEEEEEECC
T ss_pred hhCCceeeEcCCCCCHHHHHHHHhCCCCCccc------cEEECCEEEEEEEeC
Confidence 47999999999999999999999999999998 889999999999854
|
| >4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-11 Score=109.45 Aligned_cols=50 Identities=30% Similarity=0.597 Sum_probs=46.7
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-+||||||+.+++|+|+|++++|.|++|++|. ||+|+||||||++++++.
T Consensus 60 ~~GG~lG~~~~~~l~~~f~~a~~~l~~Geis~------pv~t~~G~hIikv~~~r~ 109 (110)
T 4g2p_A 60 NQGGDLGWATPDIFDPAFRDALTKLHKGQISA------PVHSSFGWHLIELLDTRK 109 (110)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHTCCTTCBCC------CEEETTEEEEEEEEEEEE
T ss_pred ccccccCeecccccCHHHHHHHHcCCCCCcCc------cEEECCEEEEEEEEEEec
Confidence 46999999999999999999999999999998 889999999999988753
|
| >1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-11 Score=105.17 Aligned_cols=48 Identities=40% Similarity=0.664 Sum_probs=45.4
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.++
T Consensus 44 ~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~~ 91 (92)
T 1jns_A 44 KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------PLHTQFGYHIIKVLYR 91 (92)
T ss_dssp TTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------EEEETTEEEEEEEECC
T ss_pred hcCCeeeEEcCcccCHHHHHHHHhCCCCCcCC------cEEECCEEEEEEEEee
Confidence 47999999999999999999999999999998 8899999999999775
|
| >3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-11 Score=109.01 Aligned_cols=52 Identities=21% Similarity=0.460 Sum_probs=48.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~ 60 (815)
-+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.+.++..
T Consensus 56 ~~GGdlG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~~~~~~~ 107 (112)
T 3gpk_A 56 AVGGDLGWIRLAQLPTELATTAASMGPGQLAG------PVEIRGGFSILYLIDKREGH 107 (112)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHHCCTTCEEE------EEEETTEEEEEEEEEEECCS
T ss_pred hcCcccceEcccccCHHHHHHHHhCCCCCccc------eEEECCEEEEEEEEeEeccc
Confidence 47999999999999999999999999999998 88999999999999886643
|
| >2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-11 Score=102.32 Aligned_cols=47 Identities=47% Similarity=0.875 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.+
T Consensus 51 ~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~d 97 (97)
T 2rqs_A 51 KRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSE------PVKSEFGYHVIKRLG 97 (97)
T ss_dssp GGTTEEEEECTTSSCHHHHHHHTTCTTSCBCC------CEECSSCEEEEEECC
T ss_pred hcCceeeeEcCCCCCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEeC
Confidence 37999999999999999999999999999998 889999999999864
|
| >1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-10 Score=100.51 Aligned_cols=47 Identities=47% Similarity=0.866 Sum_probs=44.2
Q ss_pred CCCCcccccc-CCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVV-RGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~-~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
-+||||||+. +++|+|+|++++|.|++|++|. ||+|++|||||++.+
T Consensus 45 ~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 45 SKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSD------PVKTQYGYHIIKKTE 92 (93)
T ss_dssp GGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCC------CEECSSCEEEEEEEE
T ss_pred hhCCeeeeecccccCCHHHHHHHHcCCCCCccc------eEEECCEEEEEEEec
Confidence 4799999999 9999999999999999999998 889999999999864
|
| >2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-11 Score=104.70 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=47.0
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLK 60 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~ 60 (815)
-+||||||+.+++|+|+|++++|. ++|++|+ ||+|+||||||+++++++..
T Consensus 47 ~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~------pv~t~~G~hIikv~~~~~~~ 97 (102)
T 2kgj_A 47 RNGGDMGWLEDATIPDELKNAGLK-EKGQLSG------VIKSSVGFLIVRLDDIQAAH 97 (102)
T ss_dssp TTTSEEEEEETTCCCHHHHTTCCC-STTCEEE------EEEETTEEEEEEEEEEECSS
T ss_pred hcCCccceecccccCHHHHHHHhc-CCCCccc------cEEECCEEEEEEEeeccccc
Confidence 479999999999999999999999 9999998 88999999999998876653
|
| >2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-11 Score=104.60 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=45.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|+||||||++.++
T Consensus 55 ~~gG~lg~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hii~v~~~ 102 (103)
T 2pv1_A 55 LNGGQMGWGRIQELPGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDL 102 (103)
T ss_dssp GGTTEEEEECGGGSCHHHHHHTTTCCTTCEEE------EEEETTEEEEEEEEEE
T ss_pred ccCCccceEchhhcCHHHHHHHHcCCCCCeec------cEEECCEEEEEEEEEE
Confidence 47999999999999999999999999999998 8899999999999764
|
| >2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=102.78 Aligned_cols=47 Identities=38% Similarity=0.709 Sum_probs=44.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
.+||||||+.+++|+++|++++|.|++|++|. ||+|+||||||++.+
T Consensus 65 ~~gG~lG~~~~~~l~~~f~~a~~~l~~G~is~------pv~t~~G~hIi~v~~ 111 (111)
T 2jzv_A 65 KKDGELGYVLKGQTDKDFEKALFKLKDGEVSE------VVKSSFGYHIIKADK 111 (111)
T ss_dssp TTTTEEEEEETTSSCHHHHHHHHTCCTTCBCC------CEEETTEEEEEEECC
T ss_pred hhCCccceecCCcccHHHHHHHHhCCCCCcCc------cEEECCEEEEEEEeC
Confidence 46999999999999999999999999999998 889999999999853
|
| >1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-10 Score=106.52 Aligned_cols=45 Identities=33% Similarity=0.561 Sum_probs=43.1
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
+||||||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.
T Consensus 94 ~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~------pv~t~~G~hIikv~ 138 (139)
T 1j6y_A 94 RGGDLGSFGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT 138 (139)
T ss_dssp TCSEEEECSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred cCCeeeeecccccCHHHHHHHHcCCCCCccc------cEEECCEEEEEEEe
Confidence 7999999999999999999999999999998 88999999999974
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-08 Score=117.87 Aligned_cols=212 Identities=10% Similarity=0.004 Sum_probs=131.2
Q ss_pred CCccEEEEecc-cCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCC--CCCC--CCCCcEEE
Q psy16512 200 HSNSLFVYPAE-SNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNM--LDLK--QHQPDFIS 269 (815)
Q Consensus 200 ~~t~lv~i~~~-~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~--~dl~--~~~~D~vv 269 (815)
.++.+|++..+ ++..|.+.+ +++|.++|+ +||+++|+|+++. +|..- +-.. ...+|++
T Consensus 593 ~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~-----------~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDii- 660 (831)
T 4a0g_A 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECR-----------NRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIA- 660 (831)
T ss_dssp CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHH-----------HTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEE-
T ss_pred CcEEEEEEecccccCCCCccCCHHHHHHHHHHHH-----------HcCCeEEEEcCccccccCCCchhhHhcCCCCcEE-
Confidence 45788999886 888898876 677888888 9999999998765 33211 1111 2357876
Q ss_pred EccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 270 ISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 270 ~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
++.|.+++- --+|++++++++.+.+.+..... . +. .....+.|..+.+++.++++.+.+.
T Consensus 661 -tlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~-~----------------~~-hg~T~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 661 -CFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLK-A----------------LL-HGHSYSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp -EECGGGGTTSSCCEEEEECHHHHHTTCSSCGGG-S----------------CC-CCCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred -EEecccccCccCcEEEEECHHHHHHHhcccccc-c----------------ce-eecCCcccHHHHHHHHHHHHHHHhh
Confidence 577988731 01699999998876553211000 0 00 0011245667777778888887653
Q ss_pred hhhHHHH----HHH----HHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCC----ccCHHHHHHh
Q psy16512 349 RKSFTNA----FEL----SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT----YYGYSEVQNL 416 (815)
Q Consensus 349 ~~~~~~~----~~l----~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~----~~~~~~v~~~ 416 (815)
.. .++. ..+ .+.+.+.+.+. |.+.-+. ..|.++.+.+...... ......+.+.
T Consensus 722 ~l-~~~~~~~~~~l~~~l~~~l~~~l~~~------~~v~~vr--------g~Gl~~~iel~~~~~~~~~~~~~a~~~~~~ 786 (831)
T 4a0g_A 722 ET-NHNITSQGKTLRELWDEELVQQISSH------SAVQRVV--------VIGTLFALELKADASNSGYASLYAKSLLIM 786 (831)
T ss_dssp TT-CTTBCTTSSBBCCCSCHHHHHHHHHS------TTEEEEE--------EETTEEEEEEC---------CHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhC------CCceeEe--------ecccEEEEEEecCccccccchHHHHHHHHH
Confidence 21 1111 111 22344455554 4444332 2377888887542110 0012347777
Q ss_pred hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 417 ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 417 l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.++||.++++ .+.||+++.+..|++||++++++|.+++.
T Consensus 787 l~e~Gv~v~p~----------------------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~ 826 (831)
T 4a0g_A 787 LREDGIFTRPL----------------------------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLG 826 (831)
T ss_dssp HHHTTEECCCB----------------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHCCcEEEec----------------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 88899998753 26899999989999999999999999875
Q ss_pred h
Q psy16512 497 Q 497 (815)
Q Consensus 497 ~ 497 (815)
+
T Consensus 827 ~ 827 (831)
T 4a0g_A 827 E 827 (831)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.1e-09 Score=106.32 Aligned_cols=50 Identities=44% Similarity=0.833 Sum_probs=46.5
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCccc-CCCcCCCCcccCCCcceeeecccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVN-NPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is-~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
+||||||+.+++|+|+|++++|.|++|++| . ||+|+||||||++.++.+.
T Consensus 161 ~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~------pv~t~~G~hii~v~~~~~~ 211 (252)
T 3rfw_A 161 QGGELGWFDQSTMVKPFTDAAFALKNGTITTT------PVKTNFGYHVILKENSQAK 211 (252)
T ss_dssp GTTEEEEECSSSSCHHHHHHHHHSCTTEECSS------CEEETTEEEEEEEEEEECC
T ss_pred cCCcccccccccccHHHHHHHHcCCCCCccCc------eEEECCEEEEEEEEEecCC
Confidence 499999999999999999999999999999 5 7899999999999988654
|
| >3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.44 E-value=7.9e-08 Score=99.23 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=46.7
Q ss_pred CCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 4 LSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 4 ~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
.||+|||+..++|+|+|++++|.|++|++|. ||+|+||||||++.++.+.
T Consensus 160 l~g~lg~~~~~~l~~~~~~a~~~l~~G~is~------pv~t~~G~hiikv~~~~~~ 209 (252)
T 3rgc_A 160 LKPQNASLNTSNADPRLLGLLSQIPVGSFSP------VLNGKNGYELYEVKSKDGT 209 (252)
T ss_dssp SCCEEEEEETTTSCHHHHHHHHHSCTTCBCC------CBTTTTCEEEEEEEECSCE
T ss_pred cccccceecHHhcCHHHHHHHHcCCCCCcCC------cEEeCCeEEEEEEecccCC
Confidence 4899999999999999999999999999997 8899999999999988654
|
| >3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-07 Score=101.29 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=45.6
Q ss_pred CCCccccccCCCCc---hHHHHHHhcCCCCcccCCCcCCCCcccCC-Ccceeeecccc
Q psy16512 4 LSGDLGWVVRGSMV---GEFQDAAFKLPISTVNNPVYTEPPIKTKF-GYHIIMVEGKN 57 (815)
Q Consensus 4 ~gg~lgw~~~~~~~---~~f~~a~~~l~~g~is~~~~~~~pv~t~f-GyhIi~ved~~ 57 (815)
+||+|||+.+++|+ |+|++++|.|++|++|. ||+|+| |||||++.++.
T Consensus 214 ~gG~lg~~~~~~l~~~~~~~~~a~~~l~~Geis~------pv~t~~~G~hIikv~~~~ 265 (325)
T 3nrk_A 214 RRGMVEWISSFDLYKYSKITATIAAPLPNGGVSE------VFRDERKRYCILKIEGKR 265 (325)
T ss_dssp TTTEEEEEEHHHHHHHCHHHHHHHTTCCTTCBCC------CEECTTSCEEEEEEEEEE
T ss_pred cCCcccccccccccccCHHHHHHHHcCCCCCCCc------eEEeCCCeEEEEEEeccC
Confidence 79999999999999 99999999999999998 889999 99999998873
|
| >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-06 Score=97.37 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=46.6
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-+||+|||+.+++|+|+|++++|.|++|++|. ||+|++||||+++.+..+
T Consensus 316 ~~gg~lg~~~~~~~~~~~~~a~f~l~~G~~s~------~v~~~~g~~ii~v~~~~~ 365 (408)
T 1m5y_A 316 NQGGDLGWATPDIFDPAFRDALTRLNKGQMSA------PVHSSFGWHLIELLDTRN 365 (408)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHTCCTTCBCC------CEECSSCEEEEEEEEEEE
T ss_pred hcCCcCcccCcccchHHHHHHHHcCCCCCccC------cEeeCCeEEEEEEeeecC
Confidence 36999999999999999999999999999998 889999999999988764
|
| >1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.3e-06 Score=97.01 Aligned_cols=51 Identities=24% Similarity=0.417 Sum_probs=47.2
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNHL 59 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~~ 59 (815)
-+||||||+.+++|+|+|++++|.|++|++|+ ||+|++||||+++.+....
T Consensus 206 ~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs~------pv~~~~g~~iikv~~~~~~ 256 (408)
T 1m5y_A 206 LNGGQMGWGRIQELPGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLRGE 256 (408)
T ss_dssp GGTTEEEEECGGGSCHHHHTGGGTCCTTCEEE------EEEETTEEEEEEEEEECCC
T ss_pred ccCCcccccchhhccHHHHHHHHhCCCCCccC------eeecCCeEEEEEEEEecCC
Confidence 37999999999999999999999999999998 8899999999999887654
|
| >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.7e-05 Score=78.40 Aligned_cols=98 Identities=10% Similarity=-0.003 Sum_probs=75.4
Q ss_pred cceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCc--ceEEEecCCCCeEEEecccCCCccccccC
Q psy16512 675 GQYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW--DQVLIETNDGLLSFQVTSQCTRCQYIYID 752 (815)
Q Consensus 675 ~p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w--~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd 752 (815)
..|++++.++++.+++.++.+ ...+++-+||-||+++|. . .++-| ++++|| ++.|+|+.||.+|.-++..
T Consensus 67 rqV~l~~~E~~~~~~~~~g~~-~~~l~pg~fgENLtv~Gl-~--~~~l~iG~rlrIG----~avLeVTq~r~PC~~~~~~ 138 (246)
T 1o65_A 67 RALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDGL-T--ESNVYMGDIFRWG----EALIQVSQPRSPCYKLNYH 138 (246)
T ss_dssp GSEEEEETHHHHHHHHHCGGG-GGGCSTTTTCCSEEESSC-C--TTTCBTTCEEEET----TEEEEEEEECCCCTHHHHH
T ss_pred CeEEECCHHHHHHHHHHhCCC-cccCCcccccCCEEECCc-c--hhhCCCCCEEEEC----CEEEEEEeCcCccHhHHHH
Confidence 459999999999999887542 114778999999999998 3 44557 999999 9999999999999987665
Q ss_pred ccCCCCCCChhHHHHhccccccccCccccccccccccc
Q psy16512 753 QETALNTDVPLGEYQTRNFSTVSLNVKEFFNNLEKTYN 790 (815)
Q Consensus 753 ~~tg~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~ 790 (815)
++. ++..+.+.+.+ ..|+|+-++..|.-
T Consensus 139 --~g~--~~~~~~~~~~~------r~G~y~rVl~~G~V 166 (246)
T 1o65_A 139 --FDI--SDIAQLMQNTG------KVGWLYSVIAPGKV 166 (246)
T ss_dssp --TTC--TTHHHHHHHHT------CCCEEEEEEECEEE
T ss_pred --hcC--cCHHHHHhhCC------CcEEEEEEeeCcEE
Confidence 343 35666666532 45888888866543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 815 | ||||
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 3e-24 | |
| d2exna1 | 128 | b.165.1.1 (A:1-128) Hypothetical protein BB0938 {B | 5e-23 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 9e-23 | |
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 4e-21 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 6e-15 | |
| d1eq3a_ | 96 | d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar | 9e-12 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 8e-10 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 7e-09 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 2e-08 | |
| d1m32a_ | 361 | c.67.1.3 (A:) 2-aminoethylphosphonate transaminase | 2e-08 | |
| d1elua_ | 381 | c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst | 8e-07 | |
| d1jnsa_ | 92 | d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi | 9e-07 | |
| d1j6ya_ | 120 | d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha | 2e-05 | |
| d1m5ya3 | 108 | d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase | 0.002 | |
| d1pina2 | 119 | d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain | 0.003 |
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 103 bits (257), Expect = 3e-24
Identities = 72/441 (16%), Positives = 135/441 (30%), Gaps = 58/441 (13%)
Query: 56 KNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115
+ + + YLD ++ + + + + + + G LS + +R K+
Sbjct: 17 EINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 76
Query: 116 QYFNTDSDHYSVIF--TSGATSAIKTVSEYFEFNEGSFIYLTD-NHTSVLGMRELVKTNQ 172
++ N S V + A + + G I T H S L ++V
Sbjct: 77 KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT 136
Query: 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVF 232
+ + E + + + L SN G P +
Sbjct: 137 G--AVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQA-- 192
Query: 233 KKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292
VL+DA LD++ D++ S + PTG+G L K++
Sbjct: 193 ---------GAKVLVDACQSAPHYPLDVQLIDCDWLVASGH-KMCAPTGIGFLYGKEEIL 242
Query: 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF 352
F+GGG + + ++F L KFE GT I+L D +
Sbjct: 243 E-AMPPFFGGGEMIAEVFFDHFTT--GELPHKFEAGTPAIAEAIALGAAVDYLTDLGMEN 299
Query: 353 TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412
+ +E+ Y + + + + +FN+ S+
Sbjct: 300 IHNYEVELTHYLWQGLGQIPQL------RLYGPNPKHGDRAALASFNVAGLHA-----SD 348
Query: 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472
V + + I +R+G HC + F +GS R
Sbjct: 349 VATMVDQDGIAIRSGHHCTQPLHRLF---------------------------DASGSAR 381
Query: 473 ISYGHASNWDDVKYFLSFLNQ 493
S + +++ FL L
Sbjct: 382 ASLYFYNTKEEIDLFLQSLQA 402
|
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Score = 93.1 bits (231), Expect = 5e-23
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 8/132 (6%)
Query: 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFD 594
+ + P+ CG + + ++W++ +G L + L L V
Sbjct: 1 MSTTAYQPIAECGATTQ-------SEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELR 53
Query: 595 ITRNIMTLCYKSSGSTVEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGL 654
+ ++ I+++ V + D G A W+
Sbjct: 54 MGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVP-C 112
Query: 655 RLIRISKRSSKR 666
R++++ ++
Sbjct: 113 RILKVHPDMAEV 124
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (246), Expect = 9e-23
Identities = 76/436 (17%), Positives = 138/436 (31%), Gaps = 72/436 (16%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQL-KENIFSHPH-GNSVLSDFCVSEIDQMRTKILQYFNTD 121
YLDY+ + ++ + + F +P + +D R +I D
Sbjct: 5 YLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD 64
Query: 122 SDHYSVIFTSGATSAIKTVSEYFEFNEGS----FIYLTDNHTSVLGMRELVKTNQIYSFS 177
++FTSGAT + + I H +VL ++ F
Sbjct: 65 PRE--IVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE---GFE 119
Query: 178 VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFK 237
V N + +E MR L +N G ++ + R
Sbjct: 120 VTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR------- 172
Query: 238 CSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297
+DA G +DL Q + D +S S +K++G G+GAL V++K +
Sbjct: 173 ----GIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPK-GIGALYVRRKPRVRIEA 227
Query: 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFE 357
+GGG + + + G+ G K + T
Sbjct: 228 QMHGGGHERGMRSGTLPVHQIVGM-------------------GEAYRIAKEEMATEMER 268
Query: 358 LSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417
L + + V L D ++G NI+N + + +G +
Sbjct: 269 LRGLRNRLWNGIKDIEE---VYLNGDLEHG----APNILNVSFNYVEG-------ESLIM 314
Query: 418 NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477
LK + + +G C S + L + + D SIR S G
Sbjct: 315 ALKDLAVSSGSACTSASLEPSYVLRAL----------------GLNDELAHSSIRFSLGR 358
Query: 478 ASNWDDVKYFLSFLNQ 493
+ +++ Y + + +
Sbjct: 359 FTTEEEIDYTIELVRK 374
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 94.2 bits (233), Expect = 4e-21
Identities = 76/446 (17%), Positives = 148/446 (33%), Gaps = 71/446 (15%)
Query: 56 KNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115
+ + + YLD + ++ E + + G LS +++ +R +
Sbjct: 17 EVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRAS 76
Query: 116 QYFNTDSDHYSVIFTSGATSAIKTVSE---YFEFNEGSFIYLT--DNHTSVLGMRELVKT 170
+ N S ++F G T I V+ G I ++ ++H +++ + L
Sbjct: 77 LFINARSAEE-LVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCAR 135
Query: 171 N--QIYSFSVDDARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNTVH 227
++ ++ + E + + L SN GT+ PL+ T+
Sbjct: 136 VGAELRVIPLNP------DGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLA 189
Query: 228 RNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIV 287
H VL+D A + +D++ DF S +K++G PTG+G L V
Sbjct: 190 HQH-----------GAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYV 237
Query: 288 KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK 347
K+ + GG + +E K +FE GT N II L + +
Sbjct: 238 KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAP--WRFEAGTPNTGGIIGLGAALEYVSA 295
Query: 348 KRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTY 407
+ +E + Y + +E D + + ++ FNL
Sbjct: 296 LGLNNIAEYEQNLMHYALSQ----------LESVPDLTLYGPQNRLGVIAFNLGKHHA-- 343
Query: 408 YGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467
+V + + I +RTG HC + +
Sbjct: 344 ---YDVGSFLDNYGIAVRTGHHCAMP-LMAYYNV-------------------------- 373
Query: 468 TGSIRISYGHASNWDDVKYFLSFLNQ 493
R S + ++V ++ L +
Sbjct: 374 PAMCRASLAMYNTHEEVDRLVTGLQR 399
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 75.1 bits (183), Expect = 6e-15
Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 68/433 (15%)
Query: 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD 123
Y D + + I +E + +P+ + +++ R K+ +
Sbjct: 4 YFDNNATTRVDDRVLEEMIVFYREK-YGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS 62
Query: 124 HYSVIFTSGATSAIKTV---SEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSFSVDD 180
+ FTS AT +I + I T + E +K + F V
Sbjct: 63 E--IFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKA--VLETMKYLSMKGFKVKY 118
Query: 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSR 240
+ +E + + L A +N GT P+ + + +
Sbjct: 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178
Query: 241 SNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300
G L++ + D+ S S +K G P G+G +++ + +
Sbjct: 179 VQT---------IGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKG--VPIRPLIH 226
Query: 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQ 360
GGG + GT N I+ + ++ E +
Sbjct: 227 GGGQER-----------------GLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLR 269
Query: 361 YTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420
L N ++ + + G S +QNL +
Sbjct: 270 SKLVSGLM----------NLGAHIITPLEISLPNTLSVSFPNIRG-----STLQNLLSGY 314
Query: 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480
I + T C + H+ D + G+IRIS +
Sbjct: 315 GIYVSTSSACTSKD---------------ERLRHVL-DAMGVDRRIAQGAIRISLCKYNT 358
Query: 481 WDDVKYFLSFLNQ 493
++V YFL + +
Sbjct: 359 EEEVDYFLKKIEE 371
|
| >d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Parvulin species: Human (Homo sapiens), hpar14 [TaxId: 9606]
Score = 59.7 bits (144), Expect = 9e-12
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 1 MQCLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
GDLGW+ RGSMVG FQ+AAF LP+S ++ PV+T+PP+KTKFGYHIIMVEG+
Sbjct: 40 KARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGR 95
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 8e-10
Identities = 34/332 (10%), Positives = 77/332 (23%), Gaps = 27/332 (8%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D+++ I F T + +++ + A++ SF+ + +
Sbjct: 54 MDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNVLEPGDSFLVGANGIWGQRAVDI 112
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ D + + ++ L +T
Sbjct: 113 GERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHG--------------ESSTG 158
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ C R C +L+D+ G L + + D + K P G +
Sbjct: 159 VLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLIS 218
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346
K K K + + + ++ + Y
Sbjct: 219 FSDK-----AKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESL 273
Query: 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406
Q+ L D + + +
Sbjct: 274 ALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKD----PALRLPTVTTVAV---PAG 326
Query: 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
Y V + + I++ G + G R
Sbjct: 327 YDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRI 358
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 56.3 bits (134), Expect = 7e-09
Identities = 34/332 (10%), Positives = 86/332 (25%), Gaps = 31/332 (9%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D++++ + + T+ + ++ + T+A++ + + +
Sbjct: 53 MDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDM 111
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ + + + H ++ +G + PL +
Sbjct: 112 AGRYGADVRTISKPWGEVFSLE---ELRTALETHRPAILALVHAETSTGARQPLEGVGEL 168
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
R +L+D T G + L D K G G
Sbjct: 169 CREF-----------GTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASP-- 215
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME 346
+ + T + + + K E+ T +L+ +
Sbjct: 216 --FTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIA 273
Query: 347 KKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGT 406
E + ++ + L ++ + + + DG
Sbjct: 274 ---------QEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCI--PDG- 321
Query: 407 YYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
G + + L N I++ G G R
Sbjct: 322 VDGKAVARRLLNEHNIEVGGGLGELAGKVWRV 353
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 54.7 bits (130), Expect = 2e-08
Identities = 26/334 (7%), Positives = 82/334 (24%), Gaps = 31/334 (9%)
Query: 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRE 166
+D+++ + F T+ + ++ + A + ++ + + + + +
Sbjct: 52 MDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAERAVEM 110
Query: 167 LVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226
+ + ++ + L ++
Sbjct: 111 SERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHG--------------DSSSG 156
Query: 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALI 286
+ C + +C +++DA + + + D + K+ +
Sbjct: 157 LLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVL---GAPPGIT 213
Query: 287 VKQKSAHVLNKTFYGGGTVKISMANENF--HIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344
S L+ K+ + + K TV I +L+
Sbjct: 214 PISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ 273
Query: 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD 404
+ ++ + Y + + + +
Sbjct: 274 IAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKD--------PRHRLPTVTGIMI--PK 323
Query: 405 GTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRF 438
G + Q N ++++ G G R
Sbjct: 324 G-VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRV 356
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 22/203 (10%), Positives = 58/203 (28%), Gaps = 13/203 (6%)
Query: 99 LSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNH 158
D+ + ++Q+R ++ + SV+ + A++ V + + +++
Sbjct: 27 DDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGA 86
Query: 159 TSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218
+ + + + S+ V+
Sbjct: 87 YGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVH----------- 135
Query: 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGY 278
S T N + + R ++DA + G +D+ D++ S K
Sbjct: 136 --SETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQG 193
Query: 279 PTGLGALIVKQKSAHVLNKTFYG 301
G +I +++
Sbjct: 194 VPGFAFVIAREQKLAACKGHSRS 216
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Score = 49.9 bits (117), Expect = 8e-07
Identities = 59/436 (13%), Positives = 124/436 (28%), Gaps = 61/436 (13%)
Query: 59 LKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF 118
L + Y ++ G G+ + + I + + + + + I Q+R + + F
Sbjct: 5 LANKTYFNFGGQGILPTVAL-EAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF 63
Query: 119 NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSFSV 178
N D + + T T+ V ++++G I LTD + +
Sbjct: 64 NVDPNT--ITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYR 121
Query: 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKC 238
++ + N + V + ++ + +
Sbjct: 122 FFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAE------IMAVCRRHQ 175
Query: 239 SRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298
VL+D A GS LD + + D+ + + +K F P G+G L + +N T
Sbjct: 176 GNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPT 235
Query: 299 FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFEL 358
+ + G E + V A ++ ++ T
Sbjct: 236 YV-----GWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERY 290
Query: 359 SQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418
N P V S Q +V+F + G+ +
Sbjct: 291 QAICQRSEFLWRGLNQLPHVHC-----LATSAPQAGLVSFTVDSPL----GHRAIVQKLE 341
Query: 419 LKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA 478
++I LRT IR +
Sbjct: 342 EQRIYLRTIAD--------------------------------------PDCIRACCHYI 363
Query: 479 SNWDDVKYFLSFLNQY 494
++ +++ + L+ L +
Sbjct: 364 TDEEEINHLLARLADF 379
|
| >d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Parvulin 10 (rotamase C) species: Escherichia coli [TaxId: 562]
Score = 45.4 bits (107), Expect = 9e-07
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 9 GWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57
G +G MV F F P+ P+ T+FGYHII V +N
Sbjct: 50 GEFRQGQMVPAFDKVVFSCPVLEPTGPL------HTQFGYHIIKVLYRN 92
|
| >d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Mitotic rotamase PIN1, domain 2 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 5 SGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMV 53
GDLG RG M F++A + L + +++ V T G HII
Sbjct: 76 GGDLGSFGRGQMQKPFEEATYALKVGDISDIV------DTDSGVHIIKR 118
|
| >d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Porin chaperone SurA, PPIase domains species: Escherichia coli [TaxId: 562]
Score = 36.3 bits (83), Expect = 0.002
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 10 WVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56
W F+DA +L ++ PV + FG+H+I +
Sbjct: 65 WATPDIFDPAFRDALTRLNKGQMSAPV------HSSFGWHLIELLDT 105
|
| >d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Mitotic rotamase PIN1, domain 2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 10 WVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54
RG M F+DA+F L ++ PV T G HII+
Sbjct: 80 AFSRGQMQKPFEDASFALRTGEMSGPV------FTDSGIHIILRT 118
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 815 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.97 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.97 | |
| d2exna1 | 128 | Hypothetical protein BB0938 {Bordetella bronchisep | 99.96 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.96 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.95 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.95 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.95 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.92 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.91 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.9 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.9 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.89 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.89 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.89 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.88 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.88 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.88 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.87 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.87 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.87 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.86 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.86 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.86 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.85 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.85 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.84 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.84 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.83 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.83 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.83 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.83 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.83 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.83 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.83 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.83 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.82 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.82 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.82 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.82 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.81 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.79 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.79 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.77 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.77 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.77 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.77 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.76 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.76 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.75 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.75 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.71 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.71 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.69 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.67 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.66 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.65 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.65 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.64 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.63 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.62 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.61 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.58 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.54 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.54 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.53 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.53 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.51 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.46 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.46 | |
| d1eq3a_ | 96 | Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960 | 99.4 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.33 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.28 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.26 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.26 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.26 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.23 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.22 | |
| d1jnsa_ | 92 | Parvulin 10 (rotamase C) {Escherichia coli [TaxId: | 99.15 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.13 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.12 | |
| d1pina2 | 119 | Mitotic rotamase PIN1, domain 2 {Human (Homo sapie | 99.1 | |
| d1j6ya_ | 120 | Mitotic rotamase PIN1, domain 2 {Thale cress (Arab | 99.08 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.08 | |
| d1m5ya3 | 108 | Porin chaperone SurA, PPIase domains {Escherichia | 99.04 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.01 | |
| d2pv2a1 | 103 | Porin chaperone SurA, PPIase domains {Escherichia | 98.85 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 98.68 | |
| d1o65a_ | 233 | Hypothetical protein YiiM {Escherichia coli [TaxId | 96.15 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-42 Score=386.53 Aligned_cols=367 Identities=20% Similarity=0.272 Sum_probs=302.9
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~ 139 (815)
.+|||+++.+++|+.+++++.+.+.+ .++||++. +.....+.+.++++|+.+++++|+.+ ++ |+|++|+|++++.
T Consensus 23 ~iYld~a~~~~~p~~v~~~~~~~~~~-~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~--i~~~~~~T~~~~~ 99 (405)
T d1jf9a_ 23 LAYLDSAASAQKPSQVIDAEAEFYRH-GYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEE--LVFVRGTTEGINL 99 (405)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHH-TCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGG--EEEESSHHHHHHH
T ss_pred eEEEeCccccCCCHHHHHHHHHHHHh-ccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCccc--ccccCcHHHHHHH
Confidence 58999999999999999999776654 57888765 34444445559999999999999754 55 9999999999999
Q ss_pred HHhh---hccCCCc-EEEecCCCcchh-hHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 140 VSEY---FEFNEGS-FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 140 ~~~a---l~~~~gd-vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++.+ ..+.+|+ +|++..+|++.. .|..++++.| .+++++++.++++.++. .++++|++|+++++
T Consensus 100 ~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~-------~i~~~t~lv~~~~v 172 (405)
T d1jf9a_ 100 VANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPT-------LFDEKTRLLAITHV 172 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHH-------HCCTTEEEEEEESB
T ss_pred HHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHH-------hccCCcEEEEEecC
Confidence 8887 3357888 999999999865 5777777777 66777777777776665 44689999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|.||.++|+++|.++|| ++|+++++|++|++|..++|+..+++|++++|+|||+| |.|+|+++++++
T Consensus 173 ~~~tG~~~pi~~i~~~~~-----------~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~G-p~G~g~l~v~~~ 240 (405)
T d1jf9a_ 173 SNVLGTENPLAEMITLAH-----------QHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYG-PTGIGILYVKEA 240 (405)
T ss_dssp CTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CSSCEEEEECHH
T ss_pred CCcccccCchHHhhhHHH-----------HcCCeeecccceeccccccchhhcCCceeecccccccc-CCCceeeeechh
Confidence 999999999999999999 89999999999999999999999999999999999987 999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHh
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~ 368 (815)
..+.+.+...++............ .+...+.+|+.||+|+.+++++..+++++..++... ++...|.+++.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~ 318 (405)
T d1jf9a_ 241 LLQEMPPWEGGGSMIATVSLSEGT--TWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES 318 (405)
T ss_dssp HHTTCCCSSCSSSSEEECCTTTCC--EECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhcccCcccccccccCcccccccc--ccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc
Confidence 888777766665554443322222 234567889999999999999999999999887554 8889999999999988
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
+ +.+.+..+. .++++++|.+++.++. ++...|.++||.+++|++|+.+... .++.
T Consensus 319 ~------~~~~~~~~~------~r~~ivsf~~~~~~~~-----~~~~~L~~~gI~v~~G~~c~~~~~~-~~~~------- 373 (405)
T d1jf9a_ 319 V------PDLTLYGPQ------NRLGVIAFNLGKHHAY-----DVGSFLDNYGIAVRTGHHCAMPLMA-YYNV------- 373 (405)
T ss_dssp S------TTEEEESCT------TCCSEEEEEETTCCHH-----HHHHHHHHTTEECEEECTTCHHHHH-HTTC-------
T ss_pred C------CcccccCCc------CcCcEEEEEcCCCCHH-----HHHHHHHHCCcEEEccchhhhhHHH-hcCC-------
Confidence 8 677877764 3478999999765443 4788899999999999999876543 2221
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+|+||||+|+|||.+||++++++|+++.+
T Consensus 374 -------------------~g~iRiS~~~ynt~eDid~l~~~l~~i~r 402 (405)
T d1jf9a_ 374 -------------------PAMCRASLAMYNTHEEVDRLVTGLQRIHR 402 (405)
T ss_dssp -------------------SCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999998753
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=3.7e-42 Score=382.76 Aligned_cols=370 Identities=21% Similarity=0.291 Sum_probs=299.0
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCC-CceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDS-DHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~-~~~~iv~t~g~t~al~~ 139 (815)
.+|||+++.+++|+.+++++.+.+.. .++||++. +.....+...++++|+.+++++|+++ +. +++++|+++++++
T Consensus 23 ~iYld~a~~~~~p~~v~~~~~~~~~~-~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~--i~~~~~tt~~~n~ 99 (408)
T d1t3ia_ 23 LVYLDNAATSQKPRAVLEKLMHYYEN-DNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPRE--IVYTRNATEAINL 99 (408)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHH-TCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGG--EEEESSHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHh-cCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCccc--EEeecchHHHHHH
Confidence 58999999999999999999887664 47888765 44444445569999999999999975 54 8999999999999
Q ss_pred HHhhh---ccCCCc-EEEecCCCcchhh-HHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 140 VSEYF---EFNEGS-FIYLTDNHTSVLG-MRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 140 ~~~al---~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
++.++ .+++|+ |+++..+|++... |...+++.| .++.+.++..+.+.+.. .++++|++|+++++
T Consensus 100 ~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~-------~~~~~t~lv~i~~~ 172 (408)
T d1t3ia_ 100 VAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKT-------LLSEKTKLVTVVHI 172 (408)
T ss_dssp HHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHH-------HCCTTEEEEEEESB
T ss_pred HHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhh-------ccCCCceEEEEecc
Confidence 88773 347888 8999999999765 555666666 45555555556665554 44689999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|.||.++|+++|.++|+ ++|+++++|++|++|..++|+..+++|++++|+|||+| |.|+|+++++++
T Consensus 173 ~~~tG~~~p~~~i~~~~~-----------~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~g-p~G~g~l~v~~~ 240 (408)
T d1t3ia_ 173 SNTLGCVNPAEEIAQLAH-----------QAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCA-PTGIGFLYGKEE 240 (408)
T ss_dssp CTTTCBBCCHHHHHHHHH-----------HTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTS-CTTCEEEEECHH
T ss_pred cccccccCcHHHHhhhhh-----------ccCceeeeccceecccccccccccCCceEEeccccccC-CCCccccccchh
Confidence 999999999999999999 89999999999999999999999999999999999987 999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHh
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~ 368 (815)
......|...||..... .....+. +...+.+|+.||+++++++++..+++++..++... ++...+.+++.+.+..
T Consensus 241 ~~~~~~p~~~g~~~~~~-~~~~~~~--~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~ 317 (408)
T d1t3ia_ 241 ILEAMPPFFGGGEMIAE-VFFDHFT--TGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ 317 (408)
T ss_dssp HHHHSCCCSCSTTSEEE-ECSSCEE--ECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCceecCCccccc-ccccccc--cCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc
Confidence 88766565555444332 2222222 34567899999999999999999999999887654 8888999999999998
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
. +++.++++.. ....++++++|.+++.++ .++.+.|.++||.+++|++|+.+... .++
T Consensus 318 ~------~~~~~~~~~~--~~~~~~~iv~f~~~~~~~-----~~v~~~L~~~gI~v~~G~~c~~~~~~-~~~-------- 375 (408)
T d1t3ia_ 318 I------PQLRLYGPNP--KHGDRAALASFNVAGLHA-----SDVATMVDQDGIAIRSGHHCTQPLHR-LFD-------- 375 (408)
T ss_dssp C------TTEEEESCCG--GGSCBCSEEEEEETTBCH-----HHHHHHHHTTTEECBCSCTTCHHHHH-HTT--------
T ss_pred C------ccccccCCCc--cccCcceEEEEEeCCCCH-----HHHHHHHhhCCcEEecCcccccHHHH-hhc--------
Confidence 8 7899987653 123467899999876544 35888899999999999999876542 121
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+.||||+|+|||++|||+++++|+++++
T Consensus 376 ------------------~~g~vRiS~~~ynt~~did~li~~L~~~~~ 405 (408)
T d1t3ia_ 376 ------------------ASGSARASLYFYNTKEEIDLFLQSLQATIR 405 (408)
T ss_dssp ------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 147899999999999999999999999764
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=6.2e-39 Score=353.76 Aligned_cols=372 Identities=17% Similarity=0.225 Sum_probs=292.0
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+||.+++.+|||+++.++.|..+++++.+.+... ..++.............++++|+.+++++|+++++ |+||+|+|
T Consensus 1 ~fp~l~~~~yld~~~~~~~p~~v~ea~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~--i~~~~g~t 77 (381)
T d1elua_ 1 QFPGLANKTYFNFGGQGILPTVALEAITAMYGYL-QENGPFSIAANQHIQQLIAQLRQALAETFNVDPNT--ITITDNVT 77 (381)
T ss_dssp CCGGGTTSEECCTTTCCCCCHHHHHHHHHHHHHH-HHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGG--EEEESSHH
T ss_pred CCCCCCCCEEeeCCcccCCCHHHHHHHHHHHHHh-hcCCCccchhhHHHHHHHHHHHHHHHHHhCCCccc--EEEECChH
Confidence 4678888999999999999999999887776542 33443333333333344889999999999999987 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecc
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAE 210 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~ 210 (815)
+|+++++.++.+++|+ ++++..+|+++.. |..++++.| ...++.+.....+...+ .+++.++++|++++++++
T Consensus 78 ~a~~~~~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~---~l~~~i~~~t~~v~i~~~ 154 (381)
T d1elua_ 78 TGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAA---VLANHLGPKTRLVILSHL 154 (381)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHH---HHHTTCCTTEEEEEEESB
T ss_pred HHhhhcchhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHH---HHHhhhcccccccccccc
Confidence 9999999999778999 9999999999776 455555556 33333332222222222 123456788999999999
Q ss_pred cCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecc
Q psy16512 211 SNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQK 290 (815)
Q Consensus 211 ~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~ 290 (815)
+|+||.+.|+++|.++|+++. ..+++++++|++|++|..++++..+++|++++|+|||+++|.|+|+++++++
T Consensus 155 ~n~tG~~~~~~~I~~l~~~~~-------~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~ 227 (381)
T d1elua_ 155 LWNTGQVLPLAEIMAVCRRHQ-------GNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGD 227 (381)
T ss_dssp CTTTCCBCCHHHHHHHHHHCC-------SSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTT
T ss_pred cccccccchhhHHHHHHhhcc-------cccccccccccccccccccccccccccccccccccccccccchhhHHHhhHH
Confidence 999999999999999998321 1368999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHH
Q psy16512 291 SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS---FTNAFELSQYTYFYFK 367 (815)
Q Consensus 291 ~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~---~~~~~~l~~~l~~~L~ 367 (815)
..+.+.|.+.++......... +...+.....+++.||++...++++.++++.+...+.. .++...+++++.+.|+
T Consensus 228 ~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~ 305 (381)
T d1elua_ 228 CLGEINPTYVGWRSITYGAKG--EPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLN 305 (381)
T ss_dssp TGGGCCCCSCCTTTEEECTTS--CEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCccccccccccccccc--ccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHh
Confidence 998888888777654432221 11123445677899999999999999999998877542 2788889999999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ |+++++++.. .++++++|.+.+... .+.+.+.|.++||.++...
T Consensus 306 ~~------~~~~~~~~~~-----~~~~~vsf~~~~~~~----~~~i~~~L~~~gi~v~~~~------------------- 351 (381)
T d1elua_ 306 QL------PHVHCLATSA-----PQAGLVSFTVDSPLG----HRAIVQKLEEQRIYLRTIA------------------- 351 (381)
T ss_dssp HS------TTEEESCSSC-----CSSSEEEEEECSSSC----HHHHHHHHHHTTEECEEET-------------------
T ss_pred cC------CCeEecCCCC-----ccccEEEEEcCCCCC----HHHHHHHHHhCCcEEEecC-------------------
Confidence 99 7999997653 357899999875432 3458889999999886410
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
. +++||+|+++|||++||++++++|+++
T Consensus 352 ------------------~-~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 352 ------------------D-PDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp ------------------T-TTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred ------------------C-CCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 0 378999999999999999999999864
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-38 Score=349.73 Aligned_cols=360 Identities=21% Similarity=0.291 Sum_probs=283.2
Q ss_pred hhhhhhhcccccchhhHHHHHHHHh-hccccCCCCh-hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLK-ENIFSHPHGN-SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKT 139 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~-~~~~~np~s~-~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~ 139 (815)
+||||++++++.++.+.+++.+.+. ...++||++. +.....+.+.++++|+.+|+++|+++++ |+||+|+|++++.
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~--I~~~~~~t~~l~~ 80 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPRE--IVFTSGATESDNL 80 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGG--EEEESSHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCc--EEEECCHHHHHHH
Confidence 5899999999999999999988765 3456788876 3333334455899999999999999988 9999999999999
Q ss_pred HHhhhc---cCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 140 VSEYFE---FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 140 ~~~al~---~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++.++. +++|| ||++..+|+++..+.+.++..| .++.+.++.++++.+++ +++++|++|++++++
T Consensus 81 ~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~-------~i~~~T~lv~is~~~ 153 (391)
T d1p3wa_ 81 AIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEA-------AMRDDTILVSIMHVN 153 (391)
T ss_dssp HHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHH-------HCCTTEEEEECCSBC
T ss_pred HHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHH-------hCCCCcEEEEEECCC
Confidence 988764 37888 9999999999888777776667 55556666667776665 446899999999999
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|+||.++|+++|+++|+ ++|+++++|++|++|..++|+...++|++++|+|||+| |.|+|+++++++.
T Consensus 154 n~tG~~~~~~~I~~~~~-----------~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g-~~g~g~~~~~~~~ 221 (391)
T d1p3wa_ 154 NEIGVVQDIAAIGEMCR-----------ARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG-PKGIGALYVRRKP 221 (391)
T ss_dssp TTTCCBCCHHHHHHHHH-----------HHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTS-CSSCEEEEECBTT
T ss_pred CCCeeECCHHHHHHHhc-----------cCCcEEEEeeccccCCccccchhccccccccccccccC-CCceEEEEEecch
Confidence 99999999999999999 89999999999999999999999999999999999988 8899999999998
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~ 370 (815)
.....+.+.||.. +.++..|+.+.....++..+++......... ++..+++.++.+.|..+
T Consensus 222 ~~~~~~~~~gg~~-----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 283 (391)
T d1p3wa_ 222 RVRIEAQMHGGGH-----------------ERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDI- 283 (391)
T ss_dssp BCCCCCSSCSSCT-----------------TTTTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-
T ss_pred hcccCCcccCCcc-----------------ccCcccCcchhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHhh-
Confidence 8777777655432 3467788999988888877777666544333 88888899999988887
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhh-----hhcCCCHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ-----RFLGLSDIT 445 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~-----~~~g~~~~~ 445 (815)
+...+..... .....+++|.++..... .+...| ++|.++.|++|.++... ..+|+++.
T Consensus 284 -----~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~l--~~i~v~~G~~c~~~~~~~~~~l~~~g~~~~- 346 (391)
T d1p3wa_ 284 -----EEVYLNGDLE----HGAPNILNVSFNYVEGE-----SLIMAL--KDLAVSSGSACTSASLEPSYVLRALGLNDE- 346 (391)
T ss_dssp -----TTEEECSCTT----TSCTTEEEEEETTSCHH-----HHHHHT--TTEECBCCCC------CCCHHHHHHTCCHH-
T ss_pred -----cCeeeccccc----ccCceEEEEEeCCCChH-----HHHHHh--CCCEEEccccccCCccchhHHHHHcCCCcc-
Confidence 5666654432 34567788877765433 244444 57899999999865432 22344332
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...|+||||+|+|||++||++++++|++++..
T Consensus 347 --------------------~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~ 378 (391)
T d1p3wa_ 347 --------------------LAHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 378 (391)
T ss_dssp --------------------HHHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccCCEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 12478999999999999999999999997643
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3e-37 Score=339.61 Aligned_cols=358 Identities=18% Similarity=0.230 Sum_probs=277.1
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHH
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVS 141 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~ 141 (815)
+||||+++.+++|+.+.+++.+.+. ..++||++.+.....+.+.++++|+++++++|+++++ |+|++|+|++++.++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~-~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~~--i~~~~~~T~~l~~~~ 78 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYR-EKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSE--IFFTSCATESINWIL 78 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHH-TCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGG--EEEESCHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHH-HcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCc--EEEECCHHHHHHhhh
Confidence 5899999999999999999988776 4588998876555555666899999999999999988 999999999999998
Q ss_pred hhh---ccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 142 EYF---EFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 142 ~al---~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.++ .+.+|+ +++...+|+++..+.+.++..| .+|++.++.++++++.+ .++++|++|++++++|+
T Consensus 79 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~-------~i~~~t~lv~is~v~~~ 151 (376)
T d1eg5a_ 79 KTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEK-------LVDEDTFLVSIMAANNE 151 (376)
T ss_dssp HHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHH-------HCCTTEEEEEEESBCTT
T ss_pred hcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHH-------hcCCCceEEEEECCccc
Confidence 754 236677 6666677777888888887777 45667667777777766 44689999999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
||.+.|++++.++++.. ..+++++||++|++|..++|+..+++|++++|+|||+| |+|.|+++++++..
T Consensus 152 tG~~~~~~~i~~~~~~~---------~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~g-p~G~~~l~~~~~~~- 220 (376)
T d1eg5a_ 152 VGTIQPVEDVTRIVKKK---------NKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHG-PKGVGITYIRKGVP- 220 (376)
T ss_dssp TCBBCCHHHHHHHHHHH---------CTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTS-CTTCEEEEECTTSC-
T ss_pred cceeeeehhhhhhhhhc---------ccCceeEEEeeeccccccccccccCccceecccceeec-CCCceeEEeccCcc-
Confidence 99999999999998622 67999999999999999999999999999999999987 99999999988753
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
++|.+.+++. ...+..|+.+......+..+........... .+...+..++.+.|...
T Consensus 221 -~~p~~~g~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 279 (376)
T d1eg5a_ 221 -IRPLIHGGGQ-----------------ERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--- 279 (376)
T ss_dssp -CCCSBCSSCT-----------------TTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred -cCCcccCCCC-----------------cccccCCcccchhhhhHHHHhhccccchhhhhhhhhhhhhhhccccccc---
Confidence 6677666543 2356778888888888777766654433333 67777788888888776
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhh-----hhcCCCHHHHH
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQ-----RFLGLSDITIK 447 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~-----~~~g~~~~~~~ 447 (815)
...+..... .....++.+.+++.++. .+...|+.+||.+++|++|+++... ..+|++.+.
T Consensus 280 ----~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~L~~~gI~vr~G~~c~~~~~~~~~~l~~~gi~~~~-- 344 (376)
T d1eg5a_ 280 ----GAHIITPLE----ISLPNTLSVSFPNIRGS-----TLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRI-- 344 (376)
T ss_dssp ----TCEECSCTT----SBCTTEEEEECTTCCHH-----HHHHHHHHTTEECBC------------CHHHHTTCCHHH--
T ss_pred ----ccccccccc----ccccceeeeccCCCCHH-----HHHHHHhhCCeEEeCcchhcCCccchhHHHHHcCCCccc--
Confidence 334443332 34567888888776554 4888999999999999999876432 123443321
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
..++||||+++|||++|||+++++|++++
T Consensus 345 -------------------~~~~iRiS~~~ynt~edid~l~~~L~~iv 373 (376)
T d1eg5a_ 345 -------------------AQGAIRISLCKYNTEEEVDYFLKKIEEIL 373 (376)
T ss_dssp -------------------HHHEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 13789999999999999999999999976
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=3.3e-33 Score=310.08 Aligned_cols=371 Identities=11% Similarity=0.089 Sum_probs=268.9
Q ss_pred cccccchhhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 55 GKNHLKDICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 55 d~~~~~~~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+|+-.++.+|||+++.++.|..+.+++.+.+.+ .+.|+.........+...++++|+++|+++|+++++ |+||+|+|
T Consensus 21 ~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~e--i~~~~~~T 97 (404)
T d1qz9a_ 21 QFALPEGVIYLDGNSLGARPVAALARAQAVIAE-EWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGE--VVVTDTTS 97 (404)
T ss_dssp GBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHT-CCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTS--EEECSCHH
T ss_pred cCCCCCCCEEcCCcccccCCHHHHHHHHHHHHH-HhcccCcccccchhHHHHHHHHHHHHHHHhCCCCCc--EEEecCch
Confidence 455556789999999999999999999887754 344554332222222344889999999999999998 99999999
Q ss_pred hhHHHHHhhhc-----cCCCc-EEEecCCCcch-hhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 135 SAIKTVSEYFE-----FNEGS-FIYLTDNHTSV-LGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 135 ~al~~~~~al~-----~~~gd-vv~~~~~h~s~-~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
++++.++.+.. +.+++ ++++..+|++. ..+.+.....+.+.++..+..+.+.+++ .++++|++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~T~lV~i 170 (404)
T d1qz9a_ 98 INLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDSPEELPQ-------AIDQDTAVVML 170 (404)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESSGGGHHH-------HCSTTEEEEEE
T ss_pred HHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceeccccccchhHHH-------hcCCCceEEEE
Confidence 99988765432 25677 77777666553 3444433333333333334444444444 45689999999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCc-ceEEE
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTG-LGALI 286 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G-~G~l~ 286 (815)
++++|.||.++|+++|+++|+ ++|++++||++|++|..++++..+++|++++|+|||+++|+| .|+++
T Consensus 171 ~~v~~~tG~~~pv~~i~~~~~-----------~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~ 239 (404)
T d1qz9a_ 171 THVNYKTGYMHDMQALTALSH-----------ECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVW 239 (404)
T ss_dssp ESBCTTTCBBCCHHHHHHHHH-----------HHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEE
T ss_pred ecccccccceecHHHHhcccc-----------ccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEE
Confidence 999999999999999999999 899999999999999999999999999999999998865655 78999
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYF 364 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~ 364 (815)
.++...+.+.+...+++...... ...........+.+++.++++..+...+..++..+...+... ++...+..++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 318 (404)
T d1qz9a_ 240 VSPQLCDLVPQPLSGWFGHSRQF-AMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIE 318 (404)
T ss_dssp ECTTTTTTSCCSCCCGGGBCTTS-CCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred echhhhhhCCccccccCCccccc-cccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 99888776654443333211100 111111234456788999999999999999998887765443 555555555444
Q ss_pred HHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 365 YFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 365 ~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
.+..+. ..+++++++|.. +..++++++|.+++ + .++.+.|.++||.+.. |.
T Consensus 319 l~~~~~---~~~~~~i~~p~~---~~~r~~~vsf~~~~--~-----~~v~~~L~~~gi~~~~---r~------------- 369 (404)
T d1qz9a_ 319 LVEQRC---AAHELTLVTPRE---HAKRGSHVSFEHPE--G-----YAVIQALIDRGVIGDY---RE------------- 369 (404)
T ss_dssp HHHHHH---TTSCCEECSCSS---GGGBCSEEEEECTT--H-----HHHHHHHHTTTEECEE---ET-------------
T ss_pred HHHhhc---cCCCEEEECCCC---ccceeeEEEEecCC--H-----HHHHHHHHHCCCEEee---cC-------------
Confidence 333221 116899998764 45678999998763 2 3588999999996531 11
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHhhcC
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFLQQA 499 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~~~~ 499 (815)
+++||||++ +|||++||++++++|++++.++.
T Consensus 370 -----------------------~~~lRiS~~h~ynt~~did~~~~~L~~vl~~~~ 402 (404)
T d1qz9a_ 370 -----------------------PRIMRFGFTPLYTTFTEVWDAVQILGEILDRKT 402 (404)
T ss_dssp -----------------------TTEEEEECCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred -----------------------CCeEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 378999995 69999999999999999987653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.1e-31 Score=289.47 Aligned_cols=354 Identities=12% Similarity=0.118 Sum_probs=258.6
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
+|-..+.+..++.|++++.. .. -.|+.....+. ++++|+.+++++|++. .|.|+|+.|+|+|+++++.+
T Consensus 21 ~l~~pGP~~~~~~Vl~am~~----~~--i~HRs~~f~~i----~~ea~~~l~~llg~~~-~~~ii~~gsgT~a~~~~i~~ 89 (388)
T d1h0ca_ 21 LLLGPGPSNLPPRIMAAGGL----QM--IGSMSKDMYQI----MDEIKEGIQYVFQTRN-PLTLVISGSGHCALEAALVN 89 (388)
T ss_dssp EECSSSCCCCCHHHHHHHTC----CC--CCTTSHHHHHH----HHHHHHHHHHHHTCCC-SEEEEESSCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhCc----CC--CCCCCHHHHHH----HHHHHHHHHHHhCCCC-CcEEEEcCcHHHHHHHHHHH
Confidence 34455666778888776632 11 12455667777 9999999999999964 45799999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. .+|+ +++....|.+.. +...+...+ .+..+.....+.+...+.+. .++++++++++.+|.||.+.
T Consensus 90 l~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~n~tG~i~ 161 (388)
T d1h0ca_ 90 VL-EPGDSFLVGANGIWGQR-AVDIGERIGARVHPMTKDPGGHYTLQEVEEGLA------QHKPVLLFLTHGESSTGVLQ 161 (388)
T ss_dssp HC-CSSCCEEECBSSHHHHH-HHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHH------HHCCSEEEEESEETTTTEEC
T ss_pred hh-ccCCceeeecccceeee-eccccccccccccccccCCccccchHHHHHHhc------cCCcceEEEeeeeecccccc
Confidence 98 7887 777777766643 333333333 33444444445555444322 35689999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~ 298 (815)
|+++|.++|+ ++|+++++|++|++|..++|+..+++|++++|.||++++|.|+|++++++..++.+.+.
T Consensus 162 pi~~i~~~~~-----------~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~ 230 (388)
T d1h0ca_ 162 PLDGFGELCH-----------RYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSR 230 (388)
T ss_dssp CCTTHHHHHH-----------TTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTC
T ss_pred CHHHHHHHhh-----------cccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhc
Confidence 9999999999 99999999999999999999999999999999999999899999999998887665443
Q ss_pred cccCceEEEEecCCc-ccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCC
Q psy16512 299 FYGGGTVKISMANEN-FHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 299 ~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
..++.... .+... ..........+++.+|+++..++++.++++++...|... ++...+.+++++.+..+
T Consensus 231 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~------ 302 (388)
T d1h0ca_ 231 KTKPFSFY--LDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL------ 302 (388)
T ss_dssp SSCCSCST--TCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred cccccccc--cccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc------
Confidence 22221100 00000 000112234567789999999999999999988876444 88889999999999887
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
++.++.+.. ..+..++++|.+++. ++..++.+.| +++||.++.|..|..
T Consensus 303 -g~~~~~~~~---~~rs~~i~~~~~p~~----~~~~~~~~~L~~~~gI~v~~G~~~~~---------------------- 352 (388)
T d1h0ca_ 303 -GLQLFVKDP---ALRLPTVTTVAVPAG----YDWRDIVSYVIDHFDIEIMGGLGPST---------------------- 352 (388)
T ss_dssp -TCCBSSCSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGGT----------------------
T ss_pred -CcccccCCH---HHcCCeEEEEECCCC----CCHHHHHHHHHhcCCEEEeCCchhhc----------------------
Confidence 444443322 234567889998642 2334566665 667999998854321
Q ss_pred ccCCcccccCCCCceEEEEe-ccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 455 ICGDDKDIIDGKPTGSIRIS-YGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs-~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.+.+||| +|+++|.|||++++++|++++++=
T Consensus 353 -------------~~~iRis~~g~~~t~edid~li~aL~~~L~~l 384 (388)
T d1h0ca_ 353 -------------GKVLRIGLLGCNATRENVDRVTEALRAALQHC 384 (388)
T ss_dssp -------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHS
T ss_pred -------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3689999 899999999999999999988653
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.9e-29 Score=275.04 Aligned_cols=323 Identities=12% Similarity=0.049 Sum_probs=233.1
Q ss_pred hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-E-EEecCCCcchhh-HHHHhhccc-
Q psy16512 97 SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-F-IYLTDNHTSVLG-MRELVKTNQ- 172 (815)
Q Consensus 97 ~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-v-v~~~~~h~s~~~-~~~~~~~~g- 172 (815)
....+. ++++|+++++++|+++++..+++|+|+|.++++++.++. .+++ + ++....++.... +........
T Consensus 29 ~~~~~~----~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (361)
T d1m32a_ 29 DYNIGV----VEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-GPQDKVLIVSNGAYGARMVEMAGLMGIAHH 103 (361)
T ss_dssp HHHTTT----HHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-CTTCCEEEEESSHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHH----HHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh-hhccccceeeehhhhhhHHHHhhhhhcccc
Confidence 444555 899999999999998876568889999999999999998 5555 4 444444443332 222222222
Q ss_pred eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc
Q psy16512 173 IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY 252 (815)
Q Consensus 173 ~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~ 252 (815)
.+..........+.... .....++++++++++.+|.||.+.|+++|+++|+ ++|+++++|++|+
T Consensus 104 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~tG~~~~i~~i~~~~~-----------~~g~~~~vDa~qs 167 (361)
T d1m32a_ 104 AYDCGEVARPDVQAIDA-----ILNADPTISHIAMVHSETTTGMLNPIDEVGALAH-----------RYGKTYIVDAMSS 167 (361)
T ss_dssp EEECCTTSCCCHHHHHH-----HHHHCTTCCEEEEESEETTTTEECCHHHHHHHHH-----------HHTCEEEEECTTT
T ss_pred cccccccCCccchhhHH-----HHHhccCccceEEEeeecccccchhhhhhhhhhc-----------ccceeeEeecccc
Confidence 33333322222211111 1133578999999999999999999999999999 8999999999999
Q ss_pred cCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCCh
Q psy16512 253 CGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNY 332 (815)
Q Consensus 253 ~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~ 332 (815)
+|..++|+.++++|++++|.|||+++|+|+|+++++++..++..+...++.... ...............+|++.
T Consensus 168 ~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~t~~~ 241 (361)
T d1m32a_ 168 FGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDL------YAQWRCMEDNHGKWRFTSPT 241 (361)
T ss_dssp TTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCH------HHHHHHHHHTTTCCSSCCCH
T ss_pred cCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccc------hhhhccccccccccCCCCCc
Confidence 999999999999999999999999889999999999999888877665543210 00000111233455679999
Q ss_pred hHHHHHHHHHHHHHhhhhh-H--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccC
Q psy16512 333 LAIISLKYGFDTMEKKRKS-F--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 333 ~~~~al~~al~~l~~~~~~-~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
..+.++..++..+...+.. . ++...+++.+.+.+... ++.+..+.. .+...+++|.++... ..+
T Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~~~~~----~rs~~v~~~~~p~~~--~~~ 308 (361)
T d1m32a_ 242 HTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-------GFNTLLDDE----LHSPIITAFYSPEDP--QYR 308 (361)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-------TCCBSSCGG----GBCSSEEEEECCCCT--TCC
T ss_pred hhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-------CCcccCChh----hcCCcEEEEECCCCC--CCC
Confidence 9999988888776655432 2 77788888888888876 445444332 234567788776432 234
Q ss_pred HHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
..++.+.|.++||.+.+|..+. .+++|||+..|++++||+++++
T Consensus 309 ~~~~~~~l~~~gi~i~~G~~~~------------------------------------~~~~Ris~~g~~~~~di~~lv~ 352 (361)
T d1m32a_ 309 FSEFYRRLKEQGFVIYPGKVSQ------------------------------------SDCFRIGNIGEVYAADITALLT 352 (361)
T ss_dssp HHHHHHHHHHTTEECEECCCSS------------------------------------SCEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCcEEECCCcCC------------------------------------CCEEEEeCCCCCCHHHHHHHHH
Confidence 5678999999999998774321 3789999766789999999999
Q ss_pred HHHHHH
Q psy16512 490 FLNQYF 495 (815)
Q Consensus 490 ~L~~~~ 495 (815)
+|++++
T Consensus 353 al~~~L 358 (361)
T d1m32a_ 353 AIRTAM 358 (361)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 999875
|
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Probab=99.96 E-value=2.1e-30 Score=235.10 Aligned_cols=119 Identities=15% Similarity=0.282 Sum_probs=110.1
Q ss_pred EeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCeeEEEe
Q psy16512 535 LVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGSTVEIG 614 (815)
Q Consensus 535 v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~~~~~ 614 (815)
|+.|++||||||+|++++ + ||.|||+|||+|++|+|+|||++|+|++|++.+ +++.|+|++|+++ +++||
T Consensus 1 ~s~~~~~PIKsc~g~~~~-~------gl~~DR~wmlvd~~G~fltqR~~P~La~i~~~~--~~~~L~l~~pg~~-~l~vp 70 (128)
T d2exna1 1 MSTTAYQPIAECGATTQS-E------AAAYQKRWLVANDAGQWLNRDLCPRLAEVSVEL--RMGYLVLKAPGML-RLDIP 70 (128)
T ss_dssp CCCCCEEEETTTEEECCG-G------GGGTCCSEEEEETTSCEECTTTCGGGGCCEEEE--CSSEEEEECSSSC-EEEEE
T ss_pred CcceeeecccccCCcccc-c------hhhhceeEEEECCCCCEEEcccCCcEEEEEEEE--eCCEEEEEecCCC-ceeec
Confidence 478999999999999998 5 899999999999999999999999999999999 7899999999999 99999
Q ss_pred cCCC---CCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCC
Q psy16512 615 IDNE---GLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSS 664 (815)
Q Consensus 615 ~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~ 664 (815)
++.. ......+++|++.+.+++||+++++|||++||+| ||||++.++..
T Consensus 71 L~~~~~~~~~~~~v~vw~~~~~a~~~g~~~~~WfS~~LG~~-~rLv~~~p~~~ 122 (128)
T d2exna1 71 LDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVP-CRILKVHPDMA 122 (128)
T ss_dssp SSCCCSSCSCEEEEEETTEEEEEEECCHHHHHHHHHHTCSS-EEEEEECTTTC
T ss_pred cccccccccceEEEEEcCCeeEEEECChHHHHHHHHHhCCc-eEEEEECCCCC
Confidence 9762 3455789999999999999999999999999999 99999988764
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=5.3e-29 Score=273.80 Aligned_cols=351 Identities=11% Similarity=0.066 Sum_probs=244.4
Q ss_pred cccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCC--CCceeEEecCCchhhHHHHHhhhc-
Q psy16512 69 GAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTD--SDHYSVIFTSGATSAIKTVSEYFE- 145 (815)
Q Consensus 69 ~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~--~~~~~iv~t~g~t~al~~~~~al~- 145 (815)
+.++.+++|.+++.. . .-.|+.....+. ++++++.+.+++++. .+...|+||+|+|+++++++.++.
T Consensus 10 GP~~v~~~V~~Am~~----~--~~~hr~~~f~~~----~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~ 79 (382)
T d2bkwa1 10 GPIILSGAVQKALDV----P--SLGHTSPEFVSI----FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFIL 79 (382)
T ss_dssp SSCCCCHHHHHTTSC----C--CCCTTSHHHHHH----HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHhCc----c--cCCCCcHHHHHH----HHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 444566777665521 1 112444555666 777777777877742 122248999999999999999985
Q ss_pred -cCCCc-EEEecCCCcchhhHHHHhhccc----eEE-cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 146 -FNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYS-FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 146 -~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~-~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+++|| +++....|.+.. +...+...+ .+. .+.....+.+.+++++. .++++++++++.+|.||...
T Consensus 80 ~~~~gd~vlv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~tg~~~ 152 (382)
T d2bkwa1 80 SKAPNKNVLVVSTGTFSDR-FADCLRSYGAQVDVVRPLKIGESVPLELITEKLS------QNSYGAVTVTHVDTSTAVLS 152 (382)
T ss_dssp TTCSCCEEEEECSSHHHHH-HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHH------HSCCSEEEEESEETTTTEEC
T ss_pred hcCCCCceEEEEechhhhh-hhhhccccccccccccccCCCCccchhHHHHHhh------hccchheeeeeccccccccc
Confidence 36788 777666665533 334444444 222 22223344444443322 35689999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~ 298 (815)
|++++.++++++ .+++++++|+++++|..|+|+..+++|++++|.||++++|+|+|++++++++++.+.+.
T Consensus 153 ~~~~~~~~~~~~---------~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~ 223 (382)
T d2bkwa1 153 DLKAISQAIKQT---------SPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALND 223 (382)
T ss_dssp CHHHHHHHHHHH---------CTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCH
T ss_pred cchhhhhhcccc---------ccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhc
Confidence 999999988732 67899999999999999999999999999999999998799999999999998877766
Q ss_pred cccCceEEEEecCCccccc--ccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCC
Q psy16512 299 FYGGGTVKISMANENFHIK--KDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNG 374 (815)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~ 374 (815)
..++....+......+... ......+.+.+|+++..++++.++++++...+... ++.+++++++++.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----- 298 (382)
T d2bkwa1 224 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG----- 298 (382)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred ccCCCcccchhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc-----
Confidence 5544331111100011100 01123456788999999999999999988776544 77788999999998775
Q ss_pred CCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 375 QPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 375 ~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
.+...+.... .......+++|.+++ + .++.+.|+++||.++.|..+.
T Consensus 299 -~~~~~~~~~~--~~~~s~~v~~~~~~~--~-----~~~~~~L~~~gi~i~~G~~~~----------------------- 345 (382)
T d2bkwa1 299 -LQLTSVSRYP--SNMSAHGLTAVYVAD--P-----PDVIAFLKSHGVVIAGGIHKD----------------------- 345 (382)
T ss_dssp -TCCEESSCSS--STTBCSSCEEEECSC--H-----HHHHHHHHHTTEECBCCCCTT-----------------------
T ss_pred -ccccccccCc--hhccCCcEEEEcCCC--H-----HHHHHHHHHCCeEEECCCChh-----------------------
Confidence 4555554321 012335667777653 2 358889999999999885432
Q ss_pred ccCCcccccCCCCceEEEEe-ccCCCCHHHHHHHHHHHHHH
Q psy16512 455 ICGDDKDIIDGKPTGSIRIS-YGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs-~g~~~t~edi~~lv~~L~~~ 494 (815)
...+++||| +|+.++++|+++++++|+.+
T Consensus 346 -----------~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i 375 (382)
T d2bkwa1 346 -----------IGPKYIRIGHMGVTACNKNLPYMKNCFDLI 375 (382)
T ss_dssp -----------TGGGEEEECCCGGGTSSTTCTHHHHHHHHH
T ss_pred -----------hcCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 113789999 88888888888888888764
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.95 E-value=8.3e-28 Score=264.65 Aligned_cols=358 Identities=12% Similarity=0.116 Sum_probs=247.7
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
+|-..+.+..+++|++++.... -.|+..++.+. ++++|+.|++++|+++.+ .|+|+.|+|.++++++.+
T Consensus 19 ~l~~PGP~~~~~~V~~Am~~~~------~~hr~~ef~~i----~~~~r~~L~~ll~~~~~~-~i~~~gsgT~a~ea~~~~ 87 (388)
T d2ch1a1 19 IMMGPGPSNCSKRVLTAMTNTV------LSNFHAELFRT----MDEVKDGLRYIFQTENRA-TMCVSGSAHAGMEAMLSN 87 (388)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCC------CCTTCHHHHHH----HHHHHHHHHHHHTCCCSC-EEEESSCHHHHHHHHHHH
T ss_pred eeeeCCCCCCCHHHHHHhCcCC------CCCCCHHHHHH----HHHHHHHHHHHhCCCCCe-EEEEcCcHHHHHHHHHHH
Confidence 4555567777888887753221 12455666777 999999999999996543 467788899999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. .+|+ +++....|.+. .+...+.+.+ .+........+.+....++ ...+++++++++.+|.||...
T Consensus 88 l~-~~~~~vl~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~t~tG~~~ 159 (388)
T d2ch1a1 88 LL-EEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPFSLETLARAI------ELHQPKCLFLTHGDSSSGLLQ 159 (388)
T ss_dssp HC-CTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHH------HHHCCSEEEEESEETTTTEEC
T ss_pred hc-cccccccccccccccc-cchhhhhhhcccccccccccccccchhhhhhhh------ccCCcceeeeeeccccccccc
Confidence 98 7777 66666555443 3344444444 4444444334443333322 235689999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~ 298 (815)
|+++|+++|+ ++|++++||+++++|..++|++++++|++++|.||++++|+|+|+++++++.++...+.
T Consensus 160 ~~~~i~~~~~-----------~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~ 228 (388)
T d2ch1a1 160 PLEGVGQICH-----------QHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNR 228 (388)
T ss_dssp CCTTHHHHHH-----------HTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTC
T ss_pred chhhhcchhc-----------cccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcc
Confidence 9999999999 89999999999999999999999999999999999999899999999998877644322
Q ss_pred cccCceEEEEecCCcccc-cccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCC
Q psy16512 299 FYGGGTVKISMANENFHI-KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
..+... .......+.. .........+.+|++...+.++..+++.+...+... ++...+..++...+...
T Consensus 229 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 300 (388)
T d2ch1a1 229 RTKSKV--FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM------ 300 (388)
T ss_dssp SSCCSC--GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred cCcccc--ccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc------
Confidence 211111 0000000000 001112334567889999999988888876654433 45555555566666554
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
++....+.. ..+...+++|.+++. ++..++.+.| +++||.++.|..|..
T Consensus 301 -~~~~~~~~~---~~rs~~v~~~~~p~g----~~~~~l~~~l~~~~gI~v~~G~~~~~---------------------- 350 (388)
T d2ch1a1 301 -GLDIFVKDP---RHRLPTVTGIMIPKG----VDWWKVSQYAMNNFSLEVQGGLGPTF---------------------- 350 (388)
T ss_dssp -TCCBSSCSG---GGBCTTEEEEECCTT----CCHHHHHHHHHHHHCBCCBCCCGGGT----------------------
T ss_pred -ccccccCCH---HHhCCeEEEEECCCC----CCHHHHHHHHhhcCCEEEeCCCcccc----------------------
Confidence 233332221 134467889998742 3344576666 667999998854321
Q ss_pred ccCCcccccCCCCceEEEEe-ccCCCCHHHHHHHHHHHHHHHhhcCccc
Q psy16512 455 ICGDDKDIIDGKPTGSIRIS-YGHASNWDDVKYFLSFLNQYFLQQADFV 502 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs-~g~~~t~edi~~lv~~L~~~~~~~~~~~ 502 (815)
.+.+||| +|.++|.|||++++++|++++++..+..
T Consensus 351 -------------~~~~RIs~~g~~~t~edI~~ll~alke~L~~~~~~~ 386 (388)
T d2ch1a1 351 -------------GKAWRVGIMGECSTVQKIQFYLYGFKESLKATHPDY 386 (388)
T ss_dssp -------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred -------------CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 3689999 7899999999999999999999987764
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.95 E-value=1.4e-27 Score=261.75 Aligned_cols=350 Identities=12% Similarity=0.087 Sum_probs=251.5
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSE 142 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~ 142 (815)
.+|...+.++.+++|++++... .-.|+..++.+. ++++|+.+++++|++.+ |.|+|++|+|.++++++.
T Consensus 19 ~~l~~PGP~~v~~~Vl~am~~~------~~~hr~~ef~~i----~~~~r~~l~~ll~~~~~-~~i~~~g~gT~~~~~~~~ 87 (377)
T d1vjoa_ 19 RLLLGPGPSNAHPSVLQAMNVS------PVGHLDPAFLAL----MDEIQSLLRYVWQTENP-LTIAVSGTGTAAMEATIA 87 (377)
T ss_dssp CEECSSSCCCCCHHHHHHHSSC------CCCTTSHHHHHH----HHHHHHHHHHHHTCCCS-CEEEESSCHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhCcC------CCCCCCHHHHHH----HHHHHHHHHHHhCCCCC-eEEEEcCcHHHHHHHHHH
Confidence 4677888888999998776321 123555666777 99999999999998644 578999999999999999
Q ss_pred hhccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 143 YFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 143 al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
++. .+|+ +++....|.+.. +...+...+ .+....+.....+..... ...++++++++++.+|.||.+
T Consensus 88 ~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~tg~~ 159 (377)
T d1vjoa_ 88 NAV-EPGDVVLIGVAGYFGNR-LVDMAGRYGADVRTISKPWGEVFSLEELRTA------LETHRPAILALVHAETSTGAR 159 (377)
T ss_dssp HHC-CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHH------HHHHCCSEEEEESEETTTTEE
T ss_pred hcc-ccccccceeeechhhhh-hhhhhhhhcccccccccCCCCcccchhhhhh------hhcCcceeeeeeeeeccceee
Confidence 998 7887 666666665543 233333333 333333333333332221 123568999999999999999
Q ss_pred cChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCc
Q psy16512 218 YPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNK 297 (815)
Q Consensus 218 ~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~ 297 (815)
.|+++|.+++| ++|+++++|++|++|..+++++.+++|++++|.||++++|+|+|++++++..++...+
T Consensus 160 ~~i~~i~~~~~-----------~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~ 228 (377)
T d1vjoa_ 160 QPLEGVGELCR-----------EFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQR 228 (377)
T ss_dssp CCCTTHHHHHH-----------HHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHT
T ss_pred echhhhhhhhh-----------hccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhc
Confidence 99999999999 8999999999999999999999999999999999999889999999999887765443
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
...++.... ....+. .......++..+++++..+.++..+...+...+... ++.+++..++.+.+...
T Consensus 229 ~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~------ 298 (377)
T d1vjoa_ 229 RRTKVANWY---LDMNLL-GKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI------ 298 (377)
T ss_dssp CSSCCSCST---TCHHHH-HHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred cCCCCccee---eccchh-hhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhcc------
Confidence 322221100 000000 001123456677888888888888877777665443 77888888899999876
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh-hcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA-NLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l-~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
++.++.+.. .++..+++|.+++. ++..++.+.| +++||.++.|..|.
T Consensus 299 -~~~~~~~~~----~rs~~v~~~~~p~~----~~~~~l~~~L~~~~gI~v~~G~~~~----------------------- 346 (377)
T d1vjoa_ 299 -GLSLHVEKE----YRLPTLTTVCIPDG----VDGKAVARRLLNEHNIEVGGGLGEL----------------------- 346 (377)
T ss_dssp -TCCBSSCGG----GBCSSEEEEECCTT----CCHHHHHHHHHHHHCEECEECCGGG-----------------------
T ss_pred -CceeecChH----hcCCeEEEEECCCC----CCHHHHHHHHHhcCCEEEecCcccc-----------------------
Confidence 455554332 34567888888642 3334576655 77899998875321
Q ss_pred ccCCcccccCCCCceEEEEe-ccCCCCHHHHHHHHHHHHHHHh
Q psy16512 455 ICGDDKDIIDGKPTGSIRIS-YGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs-~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.++++||| +|+++|.|||++++++|+++++
T Consensus 347 ------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 347 ------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 13689999 6889999999999999999874
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=1.3e-26 Score=250.13 Aligned_cols=339 Identities=12% Similarity=0.063 Sum_probs=245.0
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhh
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEY 143 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~a 143 (815)
||-..+.+..++.|.+++.+... .|+...+.+. ++++++.++++++++.+. +++++|+|.|+++++.+
T Consensus 2 ~L~~PGP~~v~~~V~~am~~~~~------~hr~~~f~~i----~~~~~~~l~~ll~~~~~~--i~~~gsgT~a~e~~~~n 69 (348)
T d1iuga_ 2 WLLTPGPVRLHPKALEALARPQL------HHRTEAAREV----FLKARGLLREAFRTEGEV--LILTGSGTLAMEALVKN 69 (348)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCC------CTTSHHHHHH----HHHHHHHHHHHHTCSSEE--EEEESCHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHhcCCCC------CCCCHHHHHH----HHHHHHHHHHHhCCCCCE--EEEeCchHHHHHHHHHh
Confidence 34445566778888887654221 2444666666 999999999999987654 89999999999999999
Q ss_pred hccCCCc-EEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 144 FEFNEGS-FIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 144 l~~~~gd-vv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+. .+|+ +++....+.+- .+...+++.+ .+..+.....+.+... .+++++|+++|.+|.||.+.
T Consensus 70 l~-~~g~~vlv~~~G~f~~-~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~v~~~h~eTstG~~~ 137 (348)
T d1iuga_ 70 LF-APGERVLVPVYGKFSE-RFYEIALEAGLVVERLDYPYGDTPRPEDVA----------KEGYAGLLLVHSETSTGALA 137 (348)
T ss_dssp HC-CTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCTTTSC----------CSSCSEEEEESEETTTTEEC
T ss_pred cc-cccccceeecchHHHH-HHHHHHHhcCcccccccccCCCcccccccc----------ccCCCeeEEEecchhhhhhc
Confidence 98 8888 66665443322 3566666666 3333333333332222 35789999999999999999
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccccccCcc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKT 298 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~ 298 (815)
|+++|.++|+++ ..+.++++|+++++|..+++++.+++|++++|.||++++|+|+|++++++++++++++.
T Consensus 138 ~i~~i~~~~~~~---------~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~ 208 (348)
T d1iuga_ 138 DLPALARAFKEK---------NPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPR 208 (348)
T ss_dssp CHHHHHHHHHHH---------CTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCC
T ss_pred cHHHHHHHHHhh---------hccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhccc
Confidence 999999999832 45689999999999999999999999999999999997799999999999998877653
Q ss_pred cccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCc
Q psy16512 299 FYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPL 377 (815)
Q Consensus 299 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~ 377 (815)
-+ +.++.............+|+++..++++.++++.+...+... ++.+..+..++..+... +
T Consensus 209 ~~----------~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g 271 (348)
T d1iuga_ 209 GY----------YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG-------G 271 (348)
T ss_dssp SS----------TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT-------T
T ss_pred cc----------ccchhhhhhhhccCcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhh-------h
Confidence 11 111111111123445677999999999999998876554444 33333444444444444 6
Q ss_pred EEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 378 VELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 378 ~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
+++.... .+..+++|.+++. ++..++.+.|.++||.+.+|.. ..
T Consensus 272 l~~~~~~------~s~~v~~~~~P~g----~~~~~~~~~l~~~gi~i~~G~~----~l---------------------- 315 (348)
T d1iuga_ 272 LRPVPKR------FSPAVAAFYLPEG----VPYARVKEAFAQRGAVIAGGQG----PL---------------------- 315 (348)
T ss_dssp CEESCSS------BCTTCEEEECCTT----CCHHHHHHHHHTTTEECEECCG----GG----------------------
T ss_pred hccChhh------cCCeEEEEECCCC----CCHHHHHHHHHHCCeEEEcCcc----cc----------------------
Confidence 7766432 3456889988742 3455688999999999987732 11
Q ss_pred CcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 458 DDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+..+||+...+++.+|+++++++|++++.+
T Consensus 316 ---------~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 316 ---------KGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp ---------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1358999977788999999999999998865
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=2e-24 Score=234.98 Aligned_cols=229 Identities=17% Similarity=0.104 Sum_probs=171.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc--hhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV--DDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~--~~~~ 182 (815)
.+.+++.+|+++|++. +++|+|+|+|+.+++.++. ++|| ||++..+|++++.....++... .+|.+. +..+
T Consensus 49 ~~~~~~~~A~~~g~e~----~~~t~g~t~a~~~~~~al~-~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i 123 (364)
T d2e7ja1 49 HDFIHNQLPKFLGCDV----ARVTNGAREAKFAVMHSLA-KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAI 123 (364)
T ss_dssp HHHHHTHHHHHTTSSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCC
T ss_pred HHHHHHHHHHHhCcCE----EEEECcHHHHHHHHHHHHh-CCCcEEEeecccccccchHHHhccceEEEeeecccccccc
Confidence 6779999999999743 8999999999999999998 9999 9999999998876655544333 566543 3356
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+++.+++++++ .....++++|++++++|+||.+.|+++|.++|+ ++|+++++|++|+.|..++++..
T Consensus 124 ~~~~l~~~i~~--~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~-----------~~~i~livD~a~~~g~~~~~~~~ 190 (364)
T d2e7ja1 124 TPENFAQTIEE--TKKRGEVVLALITYPDGNYGNLPDVKKIAKVCS-----------EYDVPLLVNGAYAIGRMPVSLKE 190 (364)
T ss_dssp CHHHHHHHHHH--HTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHH-----------TTTCCEEEECTTTBTTBCCCHHH
T ss_pred CHHHHHhhhhh--hcccCCceEEEeecCCCCCceeecchhheeccc-----------cccchhhccccchhhhhhhcccc
Confidence 77777776641 111245789999999999999999999999999 99999999999999999888888
Q ss_pred CCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
+++|++++|+||+|+.|.|+|+++++++.++.+........ .....+..++.+.....++.+++
T Consensus 191 ~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l 254 (364)
T d2e7ja1 191 IGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYK----------------NKEVELLGCTARGATIITLMASF 254 (364)
T ss_dssp HTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCT----------------TSBGGGTTCCCCSHHHHHHHHHH
T ss_pred cccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccC----------------cccccccccccchhHHHHHHHHH
Confidence 89999999999999966669999999887755432211000 00112334455556666666777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhc
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQL 369 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l 369 (815)
+...+.........+.++++.++|.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (364)
T d2e7ja1 255 PHVRERIKRWDEEVEKARRFAAEMEKL 281 (364)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 665543333344456777888888887
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.7e-24 Score=238.07 Aligned_cols=357 Identities=11% Similarity=-0.006 Sum_probs=246.0
Q ss_pred hhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCc---eeEEecCCchhhHHHHH
Q psy16512 65 LDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDH---YSVIFTSGATSAIKTVS 141 (815)
Q Consensus 65 Ld~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~---~~iv~t~g~t~al~~~~ 141 (815)
|.....+.+++.+.+.+.+.+.. .+.+.+....+.++ ..++.+++++++|++... ..-++|+|+|+|+.+++
T Consensus 58 ~asf~~t~~~~~~~~l~~~~~~~-N~~~~~~~P~~~~l----E~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~ 132 (450)
T d1pmma_ 58 LATFCQTWDDENVHKLMDLSINK-NWIDKEEYPQSAAI----DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGG 132 (450)
T ss_dssp CSCCSCCCCCHHHHHHHHHTTTC-BTTCTTTSHHHHHH----HHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHhc-CCCCcccCccHHHH----HHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHH
Confidence 33333556667666655554433 23344433444555 778999999999985421 12599999999999988
Q ss_pred hhhcc----------CCCc--EEEecCCCcchhhHHHHhhccc-eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEE
Q psy16512 142 EYFEF----------NEGS--FIYLTDNHTSVLGMRELVKTNQ-IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVY 207 (815)
Q Consensus 142 ~al~~----------~~gd--vv~~~~~h~s~~~~~~~~~~~g-~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i 207 (815)
.+..+ ...+ ++++...|.|+.....+.+-.- .+++++ ++.++++.+++ .++++|.+|+.
T Consensus 133 ~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~-------~i~~~t~~Vv~ 205 (450)
T d1pmma_ 133 MAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIE-------ACDENTIGVVP 205 (450)
T ss_dssp HHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBTTBCSCCHHHHHH-------HCCTTEEEEEC
T ss_pred HHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecCCCCcCcHHHHHH-------HhhhCceEEEe
Confidence 87642 1223 7777778877655544443222 566665 35778777766 44578999999
Q ss_pred ecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC-------CCCCCCCcEEEEccccccccCC
Q psy16512 208 PAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML-------DLKQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 208 ~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~-------dl~~~~~D~vv~S~~K~~g~p~ 280 (815)
++.+|.||.+.|+++|.++++... .|+.+|+|+|||||++.+..++ +....++|++++|+|||++.|.
T Consensus 206 t~gtt~tG~~dpv~~i~~i~~~~~-----~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~ 280 (450)
T d1pmma_ 206 TFGVTYTGNYEFPQPLHDALDKFQ-----ADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL 280 (450)
T ss_dssp BBSCTTTCBBCCHHHHHHHHHHHH-----HHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS
T ss_pred eeeeccCCCccccchhhHHHHHHH-----HHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCC
Confidence 999999999999999888865210 1237899999999988765433 2333469999999999998899
Q ss_pred cceEEEEeccccc-c---cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HH
Q psy16512 281 GLGALIVKQKSAH-V---LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TN 354 (815)
Q Consensus 281 G~G~l~~~~~~~~-~---l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~ 354 (815)
|+|+++++++... . ..+.|.++... .....++.+...+.++...+..+...|... ++
T Consensus 281 g~g~l~~r~~~~~~~~~~~~~~yl~~~~~-----------------~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~ 343 (450)
T d1pmma_ 281 GCGWVIWRDEEALPQELVFNVDYLGGQIG-----------------TFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNA 343 (450)
T ss_dssp SCEEEEESSGGGSCGGGCEEEEETTEEEE-----------------ECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeEEEecChhhhhhhcccccCcCCCCcC-----------------CCcccCccchHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999876431 1 11122222211 112234555566666666777666554333 99
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
..++++++.+.|++. ++++++.+.. +....++++|++.+.....++..++.+.|.++|+.+..-.. ++.
T Consensus 344 ~~~la~~l~~~L~~~------~~~el~~~~~---p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~--p~~ 412 (450)
T d1pmma_ 344 SYQVAAYLADEIAKL------GPYEFICTGR---PDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GGE 412 (450)
T ss_dssp HHHHHHHHHHHHHTT------SCEEEEEECC---TTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC--CTT
T ss_pred HHHHHHHHHHHHHhC------CCeEEEeCCC---CCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc--CCC
Confidence 999999999999998 7899986543 23446889999987665567777899999999988753211 110
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
......+|+++...+|++++++|++.|++.+.
T Consensus 413 ------------------------------~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~ 444 (450)
T d1pmma_ 413 ------------------------------ATDIVVMRIMCRRGFEMDFAELLLEDYKASLK 444 (450)
T ss_dssp ------------------------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------cCCcEEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 11136899999999999999999999998753
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=3e-23 Score=226.22 Aligned_cols=314 Identities=11% Similarity=0.084 Sum_probs=215.7
Q ss_pred cchhhHHHHHHHHhhc-cccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 73 YSQSQMNQTIEQLKEN-IFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~-~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
+|+.+.+++.+.+... .|..+ .. ..++|+.|++++++++++ |++|+|+++++.+++.++. .+||
T Consensus 39 ~p~~i~~al~~~l~~~~~Y~~~-------~G----~~elr~aiA~~~~~~~~~--Iiit~G~~~al~~~~~~l~-~~~d~ 104 (368)
T d1v2da_ 39 PPPFLLEAVRRALGRQDQYAPP-------AG----LPALREALAEEFAVEPES--VVVTSGATEALYVLLQSLV-GPGDE 104 (368)
T ss_dssp CCHHHHHHHHHHTTTSCSCCCT-------TC----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHHC-CTTCE
T ss_pred CCHHHHHHHHHHhhcccCCCCC-------cC----CHHHHHHHHhhcccCCcc--eeeccchHHHHHHHhhccc-ccccc
Confidence 4577777777655432 12222 22 678999999999999988 9999999999999999998 8888
Q ss_pred EEEecCCCcchhhHHHHhhccc-eEEcCc---hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHH
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQ-IYSFSV---DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTV 226 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g-~v~~~~---~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l 226 (815)
+++..+.|+.+.......+... .++++. ...++.+.+++ ...++++++++++++||||..++.+++.++
T Consensus 105 v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~-------~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l 177 (368)
T d1v2da_ 105 VVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEK-------ALTPRTRALLLNTPMNPTGLVFGERELEAI 177 (368)
T ss_dssp EEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHT-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHH-------hhccCceEEEEcCCCCcccccCCHHHHHHH
Confidence 8888888888877666655444 444432 23455566555 335778999999999999999996665554
Q ss_pred hhccccccccccCCCCeEEEEecccccCCCCCCCC-----CCCCcEEEEccccccccCCc--ceEEEEecccccccCccc
Q psy16512 227 HRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK-----QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTF 299 (815)
Q Consensus 227 ~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~-----~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~ 299 (815)
++ .|+++|+++++|+++.......... .....+++.|++|.++.| | +|+++.++++++.+....
T Consensus 178 ~~--------~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~-G~R~g~~~~~~~~~~~~~~~~ 248 (368)
T d1v2da_ 178 AR--------LARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEAT-GYRVGWIVGPKEFMPRLAGMR 248 (368)
T ss_dssp HH--------HHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCG-GGCCEEEECCTTTHHHHHHHH
T ss_pred HH--------HHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccc-ccccccccccccccchhhhhh
Confidence 44 2338999999999876543222221 123457778999988845 6 899999888775543221
Q ss_pred ccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh--hhhH-HHHHHHHHHHHHHHHhccccCCCC
Q psy16512 300 YGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK--RKSF-TNAFELSQYTYFYFKQLSYSNGQP 376 (815)
Q Consensus 300 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~--~~~~-~~~~~l~~~l~~~L~~l~~~~~~p 376 (815)
.....+.+.....++..++...... -... +++++.++++.+.|+++
T Consensus 249 ------------------------~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------- 297 (368)
T d1v2da_ 249 ------------------------QWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM------- 297 (368)
T ss_dssp ------------------------HHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred ------------------------hccccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHhc-------
Confidence 1112234444444444555443321 1112 66777888888999886
Q ss_pred cEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCcc
Q psy16512 377 LVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHIC 456 (815)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c 456 (815)
+++++.+.+ +.++++.+++.+ ..++|.++||.+++|+.|...
T Consensus 298 g~~~~~p~g-------~~~~~~~l~~~~--------~~~ll~~~gI~v~pg~~F~~~----------------------- 339 (368)
T d1v2da_ 298 GLRVYVPEG-------TYFLMAELPGWD--------AFRLVEEARVALIPASAFYLE----------------------- 339 (368)
T ss_dssp TCCEECCSB-------SSEEEEECTTCC--------HHHHHHHTCEECEEGGGGCSS-----------------------
T ss_pred CcEEecCCc-------eeEEEEeCCccH--------HHHHHHhCCEEEEechhhCCC-----------------------
Confidence 677776653 677777775422 456788999999998765421
Q ss_pred CCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 457 GDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 457 ~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+...+++|||++ +++|+++++++.|++++
T Consensus 340 --------~~~~~~iRis~~--~~~e~i~~ai~rL~~~l 368 (368)
T d1v2da_ 340 --------DPPKDLFRFAFC--KTEEELHLALERLGRVV 368 (368)
T ss_dssp --------SCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred --------CCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence 112489999987 57899999999998864
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.90 E-value=2.1e-23 Score=229.08 Aligned_cols=319 Identities=15% Similarity=0.150 Sum_probs=208.9
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.|+.+.+++.+.+......++ .... ..++|+.+++++ ++++++ |++|+|+++|+.+++.++.
T Consensus 44 ~p~~v~~a~~~~~~~~~~~Y~-----~~~G----~~~lR~aia~~~~~~~g~~~~~~~--i~it~G~~~al~~~~~~~~- 111 (388)
T d1j32a_ 44 TPKHIVEAAKAALEQGKTRYG-----PAAG----EPRLREAIAQKLQRDNGLCYGADN--ILVTNGGKQSIFNLMLAMI- 111 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCC-----CTTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCC-----CCCC----CHHHHHHHHHHHHHhcccCCCCce--EEEcCCHHHHHHHHHHHHh-
Confidence 457777777766654221111 1122 556677776654 456666 9999999999999999998
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
++|| |++..+.|+.+.......+... .++...++ .++++++++ .+.++++++++++|+||||.+++.++
T Consensus 112 ~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~-------~~~~~~~~~~~~~P~NPTG~~~~~~~ 184 (388)
T d1j32a_ 112 EPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQ-------AITPKTKLLVFNTPSNPTGMVYTPDE 184 (388)
T ss_dssp CTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHH-------hCCCCCeEEEECCCCCCCCcccchhh
Confidence 9999 8899988888776666554443 44554443 345566554 34578999999999999999999888
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCCC-----CCcEEEEccccccccCCc--ceEEEEeccc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQH-----QPDFISISFYKMFGYPTG--LGALIVKQKS 291 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~~-----~~D~vv~S~~K~~g~p~G--~G~l~~~~~~ 291 (815)
+.++++ .|+++|+++|+|+++..-. ....+... +..+++.|++|.|+ .+| +||++.++++
T Consensus 185 ~~~l~~--------~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~-~~GlRvG~~~~~~~~ 255 (388)
T d1j32a_ 185 VRAIAQ--------VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYA-MTGWRVGFLAGPVPL 255 (388)
T ss_dssp HHHHHH--------HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTT-CTTTCCEEEECCHHH
T ss_pred hhhhhc--------ccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhh-cchhHeEEEEECHHH
Confidence 776665 4448999999999874321 11111111 23578899999999 457 8999998887
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHhcc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-FTNAFELSQYTYFYFKQLS 370 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~~~~~~l~~~l~~~L~~l~ 370 (815)
++.+.... ......++.....++...+......-.. .++.++.++.+.+.|+++
T Consensus 256 ~~~~~~~~------------------------~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 310 (388)
T d1j32a_ 256 VKAATKIQ------------------------GHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM- 310 (388)
T ss_dssp HHHHHHHH------------------------HTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhh------------------------hhccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 65442211 1112244445544444443321111111 266677778888888877
Q ss_pred ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHH-HHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 371 YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEV-QNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 371 ~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v-~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+++.+..|.+ +.++++.++... .+..++ .+++.++||.+.+|+.|..
T Consensus 311 -----~g~~~~~p~g-------g~~l~~~l~~~~---~~~~~~~~~ll~~~gV~v~pG~~F~~----------------- 358 (388)
T d1j32a_ 311 -----PGLECPKPDG-------AFYMFPSIAKTG---RSSLDFCSELLDQHQVATVPGAAFGA----------------- 358 (388)
T ss_dssp -----TTCBCCCCCB-------TTEECCBCGGGT---CCHHHHHHHHHHHHCEECEEGGGGTC-----------------
T ss_pred -----CCCEecCCCc-------eEEEEEECCCCC---CCHHHHHHHHHHhCCEEEEeccccCC-----------------
Confidence 6777665543 556665655321 122234 4556788999998865321
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
++++|++++ .+++++++.++.|++++.
T Consensus 359 ------------------~~~~Rls~~--~~~e~l~~al~rl~~~l~ 385 (388)
T d1j32a_ 359 ------------------DDCIRLSYA--TDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp ------------------TTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCeEEEEEe--CCHHHHHHHHHHHHHHHH
Confidence 378999997 478899999999988764
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.90 E-value=3.9e-22 Score=216.15 Aligned_cols=311 Identities=15% Similarity=0.155 Sum_probs=205.7
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEE
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFI 152 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv 152 (815)
+|+.+.+++.+..... ...|+. . ..++|+.+++++|+++++ |++|+|+++++.+++..+. +++++
T Consensus 36 ~p~~~~~a~~~~~~~~-~~Yp~~------~----~~~Lr~aia~~~~v~~~~--I~~~~g~~~~~~~~~~~~~--~~~~~ 100 (355)
T d1lc5a_ 36 MPVSVKRALIDNLDCI-ERYPDA------D----YFHLHQALARHHQVPASW--ILAGNGETESIFTVASGLK--PRRAM 100 (355)
T ss_dssp CCHHHHHHHHHTGGGG-GSCCCT------T----CHHHHHHHHHHHTSCGGG--EEEESSHHHHHHHHHHHHC--CSEEE
T ss_pred CCHHHHHHHHHHHHHh-ccCCCC------C----hHHHHHHHHHHhCCCHHH--EEecccHHHHHHHHHhhhc--ccccc
Confidence 4566777776654332 112321 1 467999999999999987 9999999999988887764 44444
Q ss_pred EecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccc
Q psy16512 153 YLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHV 231 (815)
Q Consensus 153 ~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~ 231 (815)
+..+.++.+........... .++++.++...++... .+...++++++++++|+||||..++.+++.++++
T Consensus 101 v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~~~v~l~nP~NPtG~~~~~e~l~~i~~--- 171 (355)
T d1lc5a_ 101 IVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAI------LEALTPDLDCLFLCTPNNPTGLLPERPLLQAIAD--- 171 (355)
T ss_dssp EEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTH------HHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHH---
T ss_pred ccCCccceeccccccccccceeeeeeccCCccceeee------eeccccccceeeeecccCcccccchhhhhhhhhh---
Confidence 45555555443333332222 6777765544433211 2245678999999999999999999877666655
Q ss_pred cccccccCCCCeEEEEecccccCCC----CCC-CCCCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccccCc
Q psy16512 232 FKKHFKCSRSNCFVLLDAATYCGSN----MLD-LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFYGGG 303 (815)
Q Consensus 232 ~~~~~~~~~~gi~vivD~a~~~g~~----~~d-l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~g~~ 303 (815)
.|+++++++++|.+++-... ... ....+..+++.|++|.|| .+| +||++++++.+. .++.
T Consensus 172 -----~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~GlR~G~~i~~~~~~~~~~~~------ 239 (355)
T d1lc5a_ 172 -----RCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYA-IPGLRLGYLVNSDDAAMARMRR------ 239 (355)
T ss_dssp -----HHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTT-CTTTCCEEEECCCHHHHHHHHH------
T ss_pred -----hccccccccccccceeeeeeecccccccccccccceeecccccccc-cccccccceeccchhhhHHHHh------
Confidence 34489999999988753211 111 122234588899999999 457 799998876442 2211
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHD 383 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~ 383 (815)
.....+.+..+..++.++++.........++.++.++++.+.|.++ +++.+..
T Consensus 240 --------------------~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~p- 292 (355)
T d1lc5a_ 240 --------------------QQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQL------PLLTVYP- 292 (355)
T ss_dssp --------------------HSCTTCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHTS------TTEEECC-
T ss_pred --------------------hcCCccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhhc------CCcEECC-
Confidence 0112345556666665655543333223367777888888999888 6787653
Q ss_pred CCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccccc
Q psy16512 384 TDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDII 463 (815)
Q Consensus 384 ~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~ 463 (815)
. .++++++.++. +... +.+.|.++||.+++|..+.
T Consensus 293 ~-------~~~f~~~~~~~-~~~~-----~~~~L~~~gv~vr~~~~f~-------------------------------- 327 (355)
T d1lc5a_ 293 G-------RANYLLLRCER-EDID-----LQRRLLTQRILIRSCANYP-------------------------------- 327 (355)
T ss_dssp C-------SSSEEEEEESC-TTCC-----HHHHHHTTTEECEECTTST--------------------------------
T ss_pred C-------CCEEEEEECCC-CHHH-----HHHHHHHCCcEEEeCccCC--------------------------------
Confidence 2 26778888764 3333 7778889999999875332
Q ss_pred CCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 464 DGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 464 ~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+...+++|||++ +++|+++++++|++++
T Consensus 328 -~~~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 328 -GLDSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp -TCCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred -CCCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 112479999998 7999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.89 E-value=1.7e-22 Score=221.22 Aligned_cols=316 Identities=11% Similarity=0.067 Sum_probs=206.7
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc------CCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF------NTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~------g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
.|+.+.+++.+.+.+..+.++. ... ..++|+.+++++ ++++++ |++|+|+++|+..++.++.
T Consensus 45 ~p~~i~~a~~~~~~~~~~~Y~~-----~~G----~~~lR~~ia~~~~~~~~~~~~~~~--i~it~G~~~al~~~~~~l~- 112 (382)
T d1b5pa_ 45 TPEHVKEAARRALAQGKTKYAP-----PAG----IPELREALAEKFRRENGLSVTPEE--TIVTVGGSQALFNLFQAIL- 112 (382)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHTTCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCcCCCC-----CCC----CHHHHHHHHhhhhhhccccccccc--ceecCCHHHHHHHHHHHhC-
Confidence 4567777777766543322222 122 567777777766 456776 9999999999999999998
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
++|| |++..+.|+.+....+.++... .++..+++ ..+++.+++ .++++++++++++|+||||.+++.++
T Consensus 113 ~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~-------~~~~~~~~i~~~~P~NPTG~~~s~~~ 185 (382)
T d1b5pa_ 113 DPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRR-------AITPRTKALVVNSPNNPTGAVYPKEV 185 (382)
T ss_dssp CTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHT-------TCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHH-------hCCCCCeEEEECCCCCCcchhCCHHH
Confidence 9999 8899988887766666555443 56655543 345555554 34578999999999999999999877
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCC---CCCC-CC-CCCCcEEEEccccccccCCc--ceEEEEeccccccc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS---NMLD-LK-QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVL 295 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~---~~~d-l~-~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l 295 (815)
+.++++ .|+++++++|.|+++.--. .+.. .. .....+++.|++|.|+ .+| +||++++++.++.+
T Consensus 186 ~~~l~~--------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~GlR~G~~~~~~~~i~~~ 256 (382)
T d1b5pa_ 186 LEALAR--------LAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA-MTGWRIGYACGPKEVIKAM 256 (382)
T ss_dssp HHHHHH--------HHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT-CGGGCCEEEECCHHHHHHH
T ss_pred HHHHHH--------HHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhcc-CcHhheEEEEECHHHHHHH
Confidence 666655 3448999999999875311 1111 11 1123578889999999 447 89999988876544
Q ss_pred CcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH---Hhhhhh-HHHHHHHHHHHHHHHHhccc
Q psy16512 296 NKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKS-FTNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 296 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~-~~~~~~l~~~l~~~L~~l~~ 371 (815)
.... .....+++.....++..++... ...-.. .+..+..++.+.+.+...
T Consensus 257 ~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 310 (382)
T d1b5pa_ 257 ASVS------------------------RQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-- 310 (382)
T ss_dssp HHHH------------------------HTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHH------------------------HhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc--
Confidence 2211 1122234444433333333211 111111 155566677777777775
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
++.+..|.+ +.++++.+.... .+...+.+.|.++||.+.+|..|..
T Consensus 311 -----g~~~~~p~g-------g~~~~~~~~~~~---~~~~~~~~~l~e~gV~v~PG~~F~~------------------- 356 (382)
T d1b5pa_ 311 -----GLKAVRPSG-------AFYVLMDTSPIA---PDEVRAAERLLEAGVAVVPGTDFAA------------------- 356 (382)
T ss_dssp -----TCCBCCCSB-------TTEEEEECTTTC---SSHHHHHHHHHHTTEECEESGGGTC-------------------
T ss_pred -----CCeEecCCc-------eEEEeEeCCCCC---CCHHHHHHHHHHCCEEEEeCcccCC-------------------
Confidence 566554543 566777664322 2334577888899999999865421
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
.+++|++++ .++|+++..++.|.++
T Consensus 357 ----------------~~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 357 ----------------FGHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp ----------------TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred ----------------CCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 378999997 4788888888888764
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.89 E-value=2.4e-23 Score=226.12 Aligned_cols=343 Identities=10% Similarity=-0.033 Sum_probs=219.1
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccC------CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSH------PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~n------p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
.+|....+..++|++|++++.+.+.+..... .|+...+.+. ++++|+.|++++|+++ +|.|++++|+++
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~----~~~~r~~l~~l~~~~~-~~~i~~~~gt~~ 77 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEV----HEQAQNLLRELLQIPN-DYQILFLQGGAS 77 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHHTCCT-TEEEEEESSHHH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHH----HHHHHHHHHHHhCCCC-CCEEEEeCCcHH
Confidence 3666677888899999999988664321111 1344445555 9999999999999965 467999999988
Q ss_pred hHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eE--EcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IY--SFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v--~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
++..++......+++.++...+|.....+...+...+ .+ ..........+.+.. ..+.+.+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 146 (360)
T d1w23a_ 78 LQFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSE-----------FQLNENDAYLH 146 (360)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGG-----------CCCCTTEEEEE
T ss_pred HHHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhh-----------cccccccceeE
Confidence 8887777766466664444455555566677776666 22 222222222232222 22333345777
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|.||...|+++|.++|+ ++|+++++|+++++|+.++|++++++|+++++.||+++ +|.|+++.++..
T Consensus 147 ~~tg~~~~~~~i~~~~~-----------~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~--~~~~~~~~~~~~ 213 (360)
T d1w23a_ 147 ITSNNTIYGTQYQNFPE-----------INHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPS--GVTVVIVKKDLL 213 (360)
T ss_dssp EESEETTTTEECSSCCC-----------CCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCT--TCEEEEEEHHHH
T ss_pred ecCCccccceeeeeccc-----------cceeeEEeeccccccccccccccccceEEeeccccccC--CcceeeEechhh
Confidence 88999999999999999 89999999999999999999999988888777777544 356776666554
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHh
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF---TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~---~~~~~l~~~l~~~L~~ 368 (815)
.+...+....+.. .. .........+++.....+...++......+... ++....+.........
T Consensus 214 ~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (360)
T d1w23a_ 214 NTKVEQVPTMLQY----------AT---HIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE 280 (360)
T ss_dssp CSCCTTCCGGGCH----------HH---HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccccCCcchhh----------hh---hhhhhhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 4322211111110 00 001122344566666666555555544443322 3444444444444433
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
.. ....+.... ..++..+++|++++. ....++.+.|.++||.++.|..|.
T Consensus 281 ~~-----~~~~~~~~~----~~rS~~vvsf~i~~~----~~~~~~~~~l~~~GI~~~~G~~~~----------------- 330 (360)
T d1w23a_ 281 SN-----GFYVGHAEK----GSRSLMNVTFNLRNE----ELNQQFLAKAKEQGFVGLNGHRSV----------------- 330 (360)
T ss_dssp TT-----TSSEESSCG----GGBCSSEEEEECSSH----HHHHHHHHHHHHTTEESCBCCTTT-----------------
T ss_pred cc-----cccccCCCh----hhcceeEEEEEcCCC----ccHHHHHHHHHHCCCeeeeCCCcc-----------------
Confidence 31 112222222 134467899998742 123357888999999998885432
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+.+|+|+..++|.|||++|+++|+++.+
T Consensus 331 --------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~ 358 (360)
T d1w23a_ 331 --------------------GGCRASIYNAVPIDACIALRELMIQFKE 358 (360)
T ss_dssp --------------------CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred --------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence 3499999888899999999999999754
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=4.5e-22 Score=218.41 Aligned_cols=322 Identities=11% Similarity=0.065 Sum_probs=209.7
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC-------CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN-------TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g-------~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
.|+.+.+++.+.+......++. ... ..++|+.++++++ .++++ |++|+|+++++.+++.++.
T Consensus 39 ~p~~v~~~~~~a~~~~~~~Y~~-----~~G----~~~lr~aia~~~~~~~~~~~~~~~~--i~~t~G~~~~l~~~~~~l~ 107 (388)
T d1gdea_ 39 TPQHIKEYAKEALDKGLTHYGP-----NIG----LLELREAIAEKLKKQNGIEADPKTE--IMVLLGANQAFLMGLSAFL 107 (388)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCTTTS--EEEESSTTHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHhcCccCCCC-----CcC----CHHHHHHHHHHHHhhccccCCChhe--eeeccCcchHHHHHHHHhc
Confidence 4566777777766542222221 122 6678888888763 34444 9999999999999999998
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChH
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLS 221 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~ 221 (815)
++|| |++..+.|+.+......++... .++.+.++ .++++++++ .+.++++++++++|+||||.+++.+
T Consensus 108 -~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~-------~~~~~~~~i~~~~P~NPtG~~~s~~ 179 (388)
T d1gdea_ 108 -KDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKK-------YVTDKTRALIINSPCNPTGAVLTKK 179 (388)
T ss_dssp -CTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHH
T ss_pred -CCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHH-------hCccCCeEEEECCCcCCCCCcCCHH
Confidence 9999 8899988888877666655444 66666544 456666655 3357799999999999999999977
Q ss_pred HHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCC---CCC-CCcEEEEccccccccCCc--ceEEEEeccc
Q psy16512 222 WCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDL---KQH-QPDFISISFYKMFGYPTG--LGALIVKQKS 291 (815)
Q Consensus 222 ~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl---~~~-~~D~vv~S~~K~~g~p~G--~G~l~~~~~~ 291 (815)
++.++++ .|++++++||+|+++..-. ....+ ... +..+++.|++|.|+ .+| +||++++++.
T Consensus 180 ~~~~l~~--------~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~GlR~G~ii~~~~~ 250 (388)
T d1gdea_ 180 DLEEIAD--------FVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA-MTGWRLGFVAAPSWI 250 (388)
T ss_dssp HHHHHHH--------HHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT-CGGGCCEEEECCHHH
T ss_pred HHHHHHH--------HHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhcc-CccccEEEEEeeccc
Confidence 7665554 3348999999999875321 11111 111 23588899999998 447 8999999877
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHh
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTM---EKKRKSFTNAFELSQYTYFYFKQ 368 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l---~~~~~~~~~~~~l~~~l~~~L~~ 368 (815)
++.+.... .....+.+.....++..+++.. .......++..+.+..+.+.|..
T Consensus 251 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (388)
T d1gdea_ 251 IERMVKFQ------------------------MYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE 306 (388)
T ss_dssp HHHHHHHH------------------------HTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcc------------------------ccccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh
Confidence 65543221 1112234444444444444321 11111125556666677777776
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
. ++....|.+ +.++++++++.. .+..++. ++++++||.+.+|+.|....
T Consensus 307 ~-------~~~~~~p~g-------g~fl~~~l~~~~---~~~~~~~~~ll~e~gV~v~PG~~F~~~~------------- 356 (388)
T d1gdea_ 307 M-------GLPTVKPKG-------AFYIFPRIRDTG---LTSKKFSELMLKEARVAVVPGSAFGKAG------------- 356 (388)
T ss_dssp T-------TCCCCCCCB-------TTEECCBCGGGT---CCHHHHHHHHHHHTCEECEEGGGGCGGG-------------
T ss_pred c-------cccccCCCc-------eEEEEEECCCCC---CCHHHHHHHHHHhCCEEEEechhhCCCC-------------
Confidence 5 444444432 556666665321 2223444 45678899999987654321
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
.+++|+|++ +++++++..++.|++++.+.
T Consensus 357 --------------------~~~iRis~~--~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 357 --------------------EGYVRISYA--TAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp --------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------CCEEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 378999997 47899999999999987653
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.88 E-value=2.5e-22 Score=218.20 Aligned_cols=343 Identities=12% Similarity=0.061 Sum_probs=215.8
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccC-------CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSH-------PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATS 135 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~n-------p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~ 135 (815)
.|.-..+.+.+|++|++++.+.+.+.. +. .|+..++.+. ++++|+.|+++|+++. +|.|+|++|++.
T Consensus 4 ~~~F~pGP~~vp~~V~eam~~~~~~~~-~~~~~~~~~sHRs~ef~~~----~~~~r~~l~~l~~~~~-~~~i~~~~gs~t 77 (361)
T d2c0ra1 4 AYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAV----HNEAQARLLALLGNPT-GYKVLFIQGGAS 77 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHTTCCS-SEEEEEESSHHH
T ss_pred CcccCCCCcCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHH----HHHHHHHHHHHhCCCC-CCEEEEECCCch
Confidence 343455677889999999988765421 11 1333455555 9999999999999965 567999888766
Q ss_pred hHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc----eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEeccc
Q psy16512 136 AIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ----IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAES 211 (815)
Q Consensus 136 al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g----~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~ 211 (815)
+...++....+.+|+.++....+.....|...+...| .+..+.....+++.+++.+. .... .+++
T Consensus 78 ~~~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~v~ 146 (361)
T d2c0ra1 78 TQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQL--------QDNA---AYLH 146 (361)
T ss_dssp HHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCC--------CTTE---EEEE
T ss_pred HHHHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhcc--------cCcc---eEEE
Confidence 6544444333377774444444445556888887777 44455555666666654331 2232 3456
Q ss_pred CCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEeccc
Q psy16512 212 NFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS 291 (815)
Q Consensus 212 n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~ 291 (815)
|.||...|+.+|.++|+ ++|++++||+++++|..++|+.++ |+.++|++|.++.|+|.|+++..+.+
T Consensus 147 ~~tg~~~~~~~i~~~~~-----------~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~~~~~~~~~~~ 213 (361)
T d2c0ra1 147 LTSNETIEGAQFKAFPD-----------TGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLV 213 (361)
T ss_dssp EESEETTTTEECSSCCC-----------CTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGS
T ss_pred EecccceecceEEEeec-----------cCCceEEEEeeccccccccccccc--eeEEEecccccccccCcEEEEEhHHh
Confidence 88999999999998888 899999999999999999999876 55567889999955445555554444
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh--H-HHHHHHHHHHHHHHHh
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS--F-TNAFELSQYTYFYFKQ 368 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~--~-~~~~~l~~~l~~~L~~ 368 (815)
.+ ..+....... +..+. .......+.+.....++..+.......+.. . .+.+..+..+......
T Consensus 214 ~~-~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (361)
T d2c0ra1 214 AE-SPKHLPTMLR------YDTYV------KNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ 280 (361)
T ss_dssp SS-CCTTSCGGGC------HHHHH------HTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hh-Cccccccccc------ccccc------ccccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhh
Confidence 32 2221111100 00000 011222344444444444444444433322 2 4445555555555544
Q ss_pred ccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHH
Q psy16512 369 LSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKF 448 (815)
Q Consensus 369 l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~ 448 (815)
.. .......... .++..+++|.+++. ++..++.+.|+++||.++.|..|.
T Consensus 281 ~~-----~~~~~~~~~~----~rS~~~~~~~~~~~----~~~~~~~~~L~~~GI~~~~G~~~~----------------- 330 (361)
T d2c0ra1 281 SG-----GFYRGCVDVD----SRSDMNITFRLASE----ELEKEFVKASEQEGFVGLKGHRSV----------------- 330 (361)
T ss_dssp ST-----TSSEESSCGG----GBCSSEEEEECSCH----HHHHHHHHHHHHTTEESCBCCTTT-----------------
T ss_pred cc-----cccccCCChh----hccceEEEEECCCc----ccHHHHHHHHHHCCCEEecCCCcC-----------------
Confidence 31 1222332221 23456788887632 334578999999999998874321
Q ss_pred HhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 449 HFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 449 ~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
+.+|||+..+++.|||++|+++|+++.++.
T Consensus 331 --------------------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~~ 360 (361)
T d2c0ra1 331 --------------------GGLRASIYNAVPYESCEALVQFMEHFKRSR 360 (361)
T ss_dssp --------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHhc
Confidence 349999999999999999999999977653
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=4.2e-22 Score=215.73 Aligned_cols=343 Identities=11% Similarity=-0.051 Sum_probs=222.9
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccC------CCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSH------PHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~n------p~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~a 136 (815)
+|.-..+....|++|++++.+.+.+....+ .|+..++.++ ++++|+.|++++|++. ++.|+|++|++.+
T Consensus 2 ~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l----~~~~r~~l~~l~~~~~-~~~v~~~~gs~t~ 76 (360)
T d1bjna_ 2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQV----AEEAEKDFRDLLNVPS-NYKVLFCHGGGRG 76 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHH----HHHHHHHHHHHHTCCT-TEEEEEESSHHHH
T ss_pred eEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHH----HHHHHHHHHHHhCCCC-CCEEEEECCchHH
Confidence 344456677889999999988765432111 2344555566 9999999999999965 4579999888887
Q ss_pred HHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccc--eEEc--CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 137 IKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQ--IYSF--SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 137 l~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g--~v~~--~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
++.++......++++++....+.....+...++..+ .+.. ..+...+.+.... ...++++++++.+.+|
T Consensus 77 ~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~v~~~~~ 149 (360)
T d1bjna_ 77 QFAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMR-------EWQLSDNAAYMHYCPN 149 (360)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGG-------GCCCCSSCSCEEECSE
T ss_pred HHhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhh-------hhccCCceeEEEeccc
Confidence 776666555466776666666666667777777777 2222 2222333333332 3356788999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCCCcEEEEccccccccCCcceEEEEecccc
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA 292 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~ 292 (815)
.||...|+..+. ++ .+++.+++|++++++..++|.. +.|++++|+||+++.|+|.|+++..+...
T Consensus 150 ~t~~~~~~~~i~--~~-----------~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~ 214 (360)
T d1bjna_ 150 ETIDGIAIDETP--DF-----------GADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLG 214 (360)
T ss_dssp ETTTTEECCCCC--CC-----------CTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCS
T ss_pred ccccCcccccee--cc-----------cccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhh
Confidence 999999887653 33 6788999999999887776654 67999999999999888888888877665
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH-HHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS-LKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a-l~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l 369 (815)
+........+.. .. .........+.+...... ...++..+...+... ++....+.++...+...
T Consensus 215 ~~~~~~~~~~~~----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (360)
T d1bjna_ 215 KANIACPSILDY----------SI---LNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNS 281 (360)
T ss_dssp CCCTTSCGGGCH----------HH---HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCcchhh----------HH---HHhhhhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc
Confidence 433222111110 00 001111222333333333 333333333322222 55556666666666655
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
+.....+.. ..++..+++|.+++. .+..++.+.|+++||.++.|..|.
T Consensus 282 -------~~~~~~~~~---~~rs~~v~~f~~~~~----~~~~~~~~~l~~~Gi~~~~G~~~~------------------ 329 (360)
T d1bjna_ 282 -------DFYRNDVAK---RNRSRMNVPFQLADS----ALDKLFLEESFAAGLHALKGHRVV------------------ 329 (360)
T ss_dssp -------SSEECCBCG---GGBCSSEEEEEESSG----GGHHHHHHHHHHTTEECCBCCTTT------------------
T ss_pred -------ccccccCCc---ccccceEEEEEcCCc----ccHHHHHHHHHHCCCEeecCCCcc------------------
Confidence 333333322 234568899998742 334568899999999998773221
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
|.+|||++.++|+|||++|+++|+++..
T Consensus 330 -------------------g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 330 -------------------GGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp -------------------CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999764
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.7e-21 Score=210.90 Aligned_cols=283 Identities=15% Similarity=0.113 Sum_probs=189.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~ 183 (815)
..++|+++++++|+++++ |++|+|+++++.++++++. .+|| |+++.+.|+.+......++... .++.+++..++
T Consensus 58 ~~~Lr~~ia~~~gv~pe~--I~it~Gs~eai~~~~~~~~-~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~d 134 (354)
T d1fg7a_ 58 PKAVIENYAQYAGVKPEQ--VLVSRGADEGIELLIRAFC-EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLD 134 (354)
T ss_dssp CHHHHHHHHHHHTSCGGG--EEEESHHHHHHHHHHHHHC-CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTTSCCC
T ss_pred HHHHHHHHHHHhCCChHH--eeeccCchHHHHHHHHHhh-ccccccccccccccccchhhhhccCceeeccccccccccc
Confidence 468999999999999998 9999999999999999998 8998 5556666665555544443322 33444444556
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLD 259 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~d 259 (815)
.+.++.+ . .++++++++++|||||.+++.+++..++... +++.++++|.+.+--. .+..
T Consensus 135 ~~~l~~~-------~-~~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~---------~~~~~~iidd~~~~f~~~~~~~~~ 197 (354)
T d1fg7a_ 135 LQGISDK-------L-DGVKVVYVCSPNNPTGQLINPQDFRTLLELT---------RGKAIVVADEAYIEFCPQASLAGW 197 (354)
T ss_dssp HHHHHTS-------C-TTEEEEEEESSCTTTCCCCCHHHHHHHHHHH---------TTTCEEEEECTTGGGSGGGCSGGG
T ss_pred hhhhhhc-------c-cccceeeccCCCccceeEeeecccccccccc---------cccccccccccchhhccccccchh
Confidence 5555442 2 4689999999999999999988776665511 4566677776643211 1111
Q ss_pred CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
.......+++.||+|.|| .+| +||++.+++.++.+.... .....+.....+
T Consensus 198 ~~~~~~~iv~~S~SK~~~-laGlRiGy~i~~~~~i~~l~~~~--------------------------~~~~~~~~~~~~ 250 (354)
T d1fg7a_ 198 LAEYPHLAILRTLSKAFA-LAGLRCGFTLANEEVINLLMKVI--------------------------APYPLSTPVADI 250 (354)
T ss_dssp TTTCTTEEEEEESSSTTC-CGGGCCEEEEECHHHHHHHHHHS--------------------------CSSCSCHHHHHH
T ss_pred hcccccceEEeCCccccC-CCccccccccccchhhhhhhhhc--------------------------CccchhhHHHHH
Confidence 223345577889999999 557 899999988876553221 112333333333
Q ss_pred HHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHH
Q psy16512 338 LKYGFDT--MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQN 415 (815)
Q Consensus 338 l~~al~~--l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~ 415 (815)
+.+++.. ........++..+.++++.+.+.++ +++..+.|.. ++++++++++ ..++.+
T Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~------~~~~~~~p~~-------~~f~~~~~~~-------~~~~~~ 310 (354)
T d1fg7a_ 251 AAQALSPQGIVAMRERVAQIIAEREYLIAALKEI------PCVEQVFDSE-------TNYILARFKA-------SSAVFK 310 (354)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHS------TTEEEECCCS-------SSEEEEEETT-------HHHHHH
T ss_pred HHHHHhhhccccccccchhhhhHHHHHHHHHHhC------CCcceeCCCC-------ceEEEEeCCC-------HHHHHH
Confidence 3222221 1111112266777888889999888 6665554443 6788887753 234788
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.|.++||.++.+..+. +. ++++|||++ +.+|+++++++|++
T Consensus 311 ~L~~~gIlvr~~~~~~---------------------------------~~-~~~lRisig---t~ee~~~~l~aLka 351 (354)
T d1fg7a_ 311 SLWDQGIILRDQNKQP---------------------------------SL-SGCLRITVG---TREESQRVIDALRA 351 (354)
T ss_dssp HHHHTTEECEECTTST---------------------------------TC-TTEEEEECC---CHHHHHHHHHHHHT
T ss_pred HHHHCCcEEecCCCCC---------------------------------CC-CCEEEEEeC---CHHHHHHHHHHHhh
Confidence 8899999998764321 11 379999998 88999999999874
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=9.4e-22 Score=214.79 Aligned_cols=313 Identities=15% Similarity=0.160 Sum_probs=204.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
+|+.+.+++.+.+.+..+.++. ... ..++|+.+++++ | .++++ |++|+|+++|+.+++.++.
T Consensus 42 ~p~~i~~~~~~~~~~~~~~Y~~-----~~G----~~~lR~aia~~~~~~~~~~~~~~~--i~~t~G~~~al~~~~~~l~- 109 (375)
T d1o4sa_ 42 TPEPVVEEAVRFLQKGEVKYTD-----PRG----IYELREGIAKRIGERYKKDISPDQ--VVVTNGAKQALFNAFMALL- 109 (375)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCC-----TTC----CHHHHHHHHHHHHHHHTCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCcCCCC-----CcC----CHHHHHHHHhhhhhcccccccccc--ccccCcHHHHHHHHHHHHh-
Confidence 4566777776665543222222 122 556677776664 3 45555 9999999999999999998
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhc--chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARN--MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~--~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
++|| +++..+.|+.+........... .++.+.++... .+..+ ....++++++++++|+||||..++.++
T Consensus 110 ~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~nP~NPTG~~~s~~~ 182 (375)
T d1o4sa_ 110 DPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVE-------GLLVGKTKAVLINSPNNPTGVVYRREF 182 (375)
T ss_dssp CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHH-------HTCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHH-------HhhccCccEEEEeCCCCCccCCCCHHH
Confidence 8999 8888988887766555544333 45555544332 22222 234567999999999999999999888
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCCCC---CC----CCCCCCcEEEEccccccccCCc--ceEEEEeccccc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LD----LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAH 293 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~d----l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~ 293 (815)
+.++++ .|++|+++|+.|+++...... .. ....+.-+++.|++|.|+ .+| +||++.+++.++
T Consensus 183 ~~~i~~--------~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-l~G~R~G~~~~~~~~~~ 253 (375)
T d1o4sa_ 183 LEGLVR--------LAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHS-MTGWRVGYLISSEKVAT 253 (375)
T ss_dssp HHHHHH--------HHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTT-CGGGCCEEEECCHHHHH
T ss_pred HHHHHH--------hHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhcc-CCccccccccccccchh
Confidence 766665 444899999999876543211 11 122345688899999999 447 899999887765
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhcccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~ 372 (815)
.+..... ......+..... .+........... +.....++.+.+.|++.
T Consensus 254 ~~~~~~~------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~--- 303 (375)
T d1o4sa_ 254 AVSKIQS------------------------HTTSCINTVAQY---AALKALEVDNSYMVQTFKERKNFVVERLKKM--- 303 (375)
T ss_dssp HHHHHHH------------------------HHTCSCCHHHHH---HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhhhhhc------------------------cccccccccchh---hhhhhcccchhhhHHHHHHHHHHHHHHHHhc---
Confidence 4422110 001112222221 2222222221222 66777788888888876
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
++++..|.+ +.++++.++..+ ...+.++|.++||.+++|..|..
T Consensus 304 ----g~~~~~p~g-------g~f~~~~~~~~~-----~~~~~~ll~~~gV~v~pG~~F~~-------------------- 347 (375)
T d1o4sa_ 304 ----GVKFVEPEG-------AFYLFFKVRGDD-----VKFCERLLEEKKVALVPGSAFLK-------------------- 347 (375)
T ss_dssp ----TCCCCCCSB-------SSEEEEECSSCH-----HHHHHHHHHHHCEECEEGGGGTC--------------------
T ss_pred ----CceEecCCc-------cEEEEEECCCCH-----HHHHHHHHHhCCEEEEEccccCC--------------------
Confidence 677665543 667777776422 22366667889999998865421
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+|++|||++ .++++++..++.|++++.
T Consensus 348 ---------------~g~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 348 ---------------PGFVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp ---------------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred ---------------CCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 379999997 478999999999998764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=4.8e-21 Score=207.96 Aligned_cols=328 Identities=11% Similarity=0.057 Sum_probs=196.5
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC--CCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT--DSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~--~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
.|+.+.+++.+.+....++++.... .+. .+.+.+.+++.+|. ++++ |++|+|+++++..++.++. ++||
T Consensus 13 ~p~~i~eal~~~~~~~~~~Y~~~~g--~~l----r~~ia~~~~~~~g~~~~~~~--i~it~G~~~~l~~~~~~l~-~~gd 83 (361)
T d1d2fa_ 13 TAPCIIEALNQRLMHGVFGYSRWKN--DEF----LAAIAHWFSTQHYTAIDSQT--VVYGPSVIYMVSELIRQWS-ETGE 83 (361)
T ss_dssp CCHHHHHHHHHHHTTCCCCCCCSCC--HHH----HHHHHHHHHHHSCCCCCGGG--EEEESCHHHHHHHHHHHSS-CTTC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCC--HHH----HHHHHHHHHHHhCCCCCcce--EEEeCCHHHHHHHHhhhcc-cccc
Confidence 4567777777766543333332111 112 33444444455564 5565 9999999999999999998 8999
Q ss_pred -EEEecCCCcchhhHHHHhhccc-eEEcCch---hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD---DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~---~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
|++..+.|+.+....+.++... .++.+.. ...+.+.+++.+. .++++++++++++||||..++.+++.+
T Consensus 84 ~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~------~~~~~~i~l~~p~NPTG~~~s~~~~~~ 157 (361)
T d1d2fa_ 84 GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA------KPECKIMLLCSPQNPTGKVWTCDELEI 157 (361)
T ss_dssp EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHT------STTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcc------cCCceeEEecccccccccccchhhhhh
Confidence 8899988887766665554433 4444322 2345555554332 467999999999999999999766555
Q ss_pred HhhccccccccccCCCCeEEEEecccccC----CCCCCCCCC--CCcEEEEccccccccCCc--ceEEEEecccc-cccC
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCG----SNMLDLKQH--QPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLN 296 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g----~~~~dl~~~--~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~ 296 (815)
+++ .|+++|+++|+|+++..- ..+..+... +..+++.|++|.++.| | +|++++..... +...
T Consensus 158 i~~--------~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~-g~R~g~~~~~~~~~~~~~~ 228 (361)
T d1d2fa_ 158 MAD--------LCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIP-ALTGAYGIIENSSSRDAYL 228 (361)
T ss_dssp HHH--------HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCG-GGCCEEEEECSHHHHHHHH
T ss_pred hhh--------hhhhhheeeeecccccccccccccccccccccccccccccccccccccc-cccceeeecchhHHHHHHh
Confidence 444 333899999999986532 111222222 2347778999988844 5 78888765432 1111
Q ss_pred cccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCC
Q psy16512 297 KTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 297 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
..+. ......+++...+.+...++.......... ....+.++.+.+.+.+..
T Consensus 229 ~~~~----------------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----- 281 (361)
T d1d2fa_ 229 SALK----------------------GRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAF----- 281 (361)
T ss_dssp HHHH----------------------TTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred hhcc----------------------cccccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhc-----
Confidence 1110 011123444444444434443322222222 445555556666654431
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCC
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGH 454 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 454 (815)
+++.+..|.+ +.++++.+.... ++..++.+. ++++||.+.+|+.|...
T Consensus 282 ~~~~~~~p~g-------g~~~~~~l~~~~---~~~~~~~~~Ll~~~gv~v~pG~~F~~~--------------------- 330 (361)
T d1d2fa_ 282 PELNWQIPQS-------TYLAWLDLRPLN---IDDNALQKALIEQEKVAIMPGYTYGEE--------------------- 330 (361)
T ss_dssp SSCCCCCCSB-------CSEEEEECGGGC---CCHHHHHHHHHHTTCEECEEGGGGCGG---------------------
T ss_pred ccccccccCc-------eeEEEEEccCCC---CCHHHHHHHHHHhCCEEEEeccccCCC---------------------
Confidence 3455454432 456666664211 223345554 57789999988765321
Q ss_pred ccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 455 ICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 455 ~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
..+++|+|++ .+++++++.++.|.++++
T Consensus 331 ------------~~~~vRis~~--~~~e~l~~al~rl~~~l~ 358 (361)
T d1d2fa_ 331 ------------GRGFVRLNAG--CPRSKLEKGVAGLINAIR 358 (361)
T ss_dssp ------------GTTEEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred ------------CCCEEEEEEc--CCHHHHHHHHHHHHHHHH
Confidence 1378999987 477888888888888764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=1.4e-21 Score=209.89 Aligned_cols=303 Identities=16% Similarity=0.171 Sum_probs=204.0
Q ss_pred chhhhhhhhccc-ccchhhHHHHHHHHhhccc-cCCCChhhhhhhhhhhHHHHHHHHHhHcC---CCCCceeEEecCCch
Q psy16512 60 KDICYLDYTGAG-VYSQSQMNQTIEQLKENIF-SHPHGNSVLSDFCVSEIDQMRTKILQYFN---TDSDHYSVIFTSGAT 134 (815)
Q Consensus 60 ~~~iyLd~a~~~-~~p~~v~~al~~~l~~~~~-~np~s~~~~~~~~~~~~~~~r~~la~~~g---~~~~~~~iv~t~g~t 134 (815)
++.++|+.+... +.|+.+.+++.+.+..... ..|. .. ..++|++++++++ +++++ |++|+|++
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~------~g----~~~Lr~aia~~~~~~~v~~d~--I~it~G~~ 86 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNN--VSVGNGAD 86 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGG--EEEEEHHH
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCC------CC----cHHHHHHHHHHhcccCCCcce--EEecCcch
Confidence 346777766444 5566777777776643221 1122 12 5679999999886 45666 99999999
Q ss_pred hhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 135 SAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 135 ~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+++.++++. || +++..+.|+.+..+...++... .++++.+.... + ...++++++++++|+|
T Consensus 87 ~~l~~l~~~-----~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~--~----------~~~~~~~~l~l~nP~N 149 (334)
T d2f8ja1 87 EIIYVMMLM-----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP--E----------VNVGEGDVVFIPNPNN 149 (334)
T ss_dssp HHHHHHHHH-----SSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC--C----------CCCCTTEEEEEESSCT
T ss_pred hHHHHHhhh-----ccccccccccccccccchhccCCcccccccccccccc--c----------cccccceEEEeccccc
Confidence 999887754 46 8888877777766655554333 44555433221 1 1235689999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC---CCCCCCCCcEEEEccccccccCCc--ceEEEE
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM---LDLKQHQPDFISISFYKMFGYPTG--LGALIV 287 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~---~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~ 287 (815)
|||.+++.++|.++++ +++++++|.++...... ......+.-+++.|++|.++ .+| +||++.
T Consensus 150 PtG~~~s~~~l~~~~~------------~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~~~~ 216 (334)
T d2f8ja1 150 PTGHVFEREEIERILK------------TGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFS-LAAQRVGYVVA 216 (334)
T ss_dssp TTCCCCCHHHHHHHHT------------TTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSS-CTTTCEEEEEE
T ss_pred ccceeecHHHhhcccc------------ceeEEeecccchhhcccccccccccCceEEEEecCccccc-hhhhhhhhccc
Confidence 9999999999988765 68899999775432211 11112234588889999999 457 899999
Q ss_pred ecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy16512 288 KQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFK 367 (815)
Q Consensus 288 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~ 367 (815)
++++++.+.... .....+..+..++.+.+..........++..+.++++.+.|+
T Consensus 217 ~~~~i~~l~~~~--------------------------~~~~~s~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 270 (334)
T d2f8ja1 217 SEKFIDAYNRVR--------------------------LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALR 270 (334)
T ss_dssp CHHHHHHHHHHS--------------------------CTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhh--------------------------cccccchhhhhhcccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 988876553221 112344455555545554433332223777788888999999
Q ss_pred hccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHH
Q psy16512 368 QLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIK 447 (815)
Q Consensus 368 ~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~ 447 (815)
++ +++++.+. ++++++.++..+. .++.+.|.++||.++..
T Consensus 271 ~~-------g~~~~~~~--------g~f~~~~~~~~~~-----~~~~~~L~~~GI~vr~~-------------------- 310 (334)
T d2f8ja1 271 EM-------GYRITDSR--------GNFVFVFMEKEEK-----ERLLEHLRTKNVAVRSF-------------------- 310 (334)
T ss_dssp HH-------TCEECCCC--------SSEEEEECCHHHH-----HHHHHHHHHTTEECEEE--------------------
T ss_pred HC-------CCeECCCC--------ceEEEEECCCCCH-----HHHHHHHHHCCCEECCC--------------------
Confidence 88 67877443 5677777664332 35888888999998641
Q ss_pred HHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 448 FHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 448 ~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
.++||||++ +.+|+++++++|++
T Consensus 311 --------------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 311 --------------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp --------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred --------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 278999998 78999999999986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.86 E-value=1.6e-21 Score=214.43 Aligned_cols=323 Identities=12% Similarity=0.103 Sum_probs=194.1
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhc
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~ 145 (815)
+.|+.+.+++.+.+....++++.. ..++|+.+++++ | +++++ |++|+|+++|+.+++.++.
T Consensus 44 ~~p~~v~~al~~~~~~~~~~Y~~g-----------~~~Lr~aia~~~~~~~g~~~~~~~--I~vt~G~~~al~~~~~~~~ 110 (394)
T d1c7na_ 44 KNPPELIEGLKKYLDETVLGYTGP-----------TEEYKKTVKKWMKDRHQWDIQTDW--IINTAGVVPAVFNAVREFT 110 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCSSBCC-----------CHHHHHHHHHHHHHHHCCCCCGGG--EEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCC-----------CHHHHHHHHHHHHHhcCCCCCCcc--eEeeccchhhhhhhhcccc
Confidence 356778888887776543333321 335666666654 4 45655 9999999999999999998
Q ss_pred cCCCc-EEEecCCCcchhhHHHHhhccceEEcC--c-hh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 146 FNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFS--V-DD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 146 ~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~--~-~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
++|| +++....|+.+......++.. .+++. . +. ..+.+..+.. ..+++++++++++||||||.+++
T Consensus 111 -~pgd~vi~~~p~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~d~~~~~~~------~~~~~~~~i~l~~P~NPTG~v~s 182 (394)
T d1c7na_ 111 -KPGDGVIIITPVYYPFFMAIKNQERK-IIECELLEKDGYYTIDFQKLEKL------SKDKNNKALLFCSPHNPVGRVWK 182 (394)
T ss_dssp -CTTCEEEECSSCCTHHHHHHHTTTCE-EEECCCEEETTEEECCHHHHHHH------HTCTTEEEEEEESSBTTTTBCCC
T ss_pred -ccccccccccCcccchhhHHhhhhhc-ccccccccccccccchhhhhhhh------hccccceEEEecccccccceecc
Confidence 9999 888887776665554443332 23322 1 22 2233333321 12467999999999999999999
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCC----CCCCCCC-----CCCcEEEEccccccccCCc--ceEEEEe
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS----NMLDLKQ-----HQPDFISISFYKMFGYPTG--LGALIVK 288 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~----~~~dl~~-----~~~D~vv~S~~K~~g~p~G--~G~l~~~ 288 (815)
.+++.++++ .|++++++||+|+++.--. ....... ...-+++.|++|.|+ .+| +|++++.
T Consensus 183 ~~~l~~l~~--------~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~R~g~~~~~ 253 (394)
T d1c7na_ 183 KDELQKIKD--------IVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN-IAGMGMSNIIIK 253 (394)
T ss_dssp HHHHHHHHH--------HHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT-CGGGCCEEEECC
T ss_pred HHHhhhhhc--------cccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccc-cccccccccccc
Confidence 888666655 3448999999999875321 1111111 124477889999999 446 7888887
Q ss_pred cccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHH
Q psy16512 289 QKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYF 366 (815)
Q Consensus 289 ~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L 366 (815)
+..+ +.+..... .....+.+.....++........+..... ++..+.++.+.+.+
T Consensus 254 ~~~i~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 310 (394)
T d1c7na_ 254 NPDIRERFTKSRD-----------------------ATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFF 310 (394)
T ss_dssp CHHHHHHHHHHHH-----------------------HTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhhhhhhhhhhh-----------------------hccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhh
Confidence 6543 22211110 01111222222233222222222221222 55555566666666
Q ss_pred HhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHH
Q psy16512 367 KQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDIT 445 (815)
Q Consensus 367 ~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~ 445 (815)
+... ++++...|.+ +.+++++++... .+..++.+. +++.||.+.+|+.+..+.
T Consensus 311 ~~~~-----~~~~~~~p~g-------~~~~~~~~~~~~---~~~~~~~~~Ll~~~gV~v~pG~~Fg~~~----------- 364 (394)
T d1c7na_ 311 EVNH-----PEIKAPLIEG-------TYLQWIDFRALK---MDHKAMEEFMIHKAQIFFDEGYIFGDGG----------- 364 (394)
T ss_dssp HHHC-----TTSBCCCCSB-------SSEEEEECGGGC---CCHHHHHHHHHHTTCCCCEEGGGGCGGG-----------
T ss_pred hccc-----cceeecCCCc-------eeEEEEECCCCC---CCHHHHHHHHHHhCCEEEEcchhhCCCC-----------
Confidence 5431 3555444432 556677776421 233345554 567799999987654211
Q ss_pred HHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 446 IKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 446 ~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|+|++ .++|+++..++.|++++.+
T Consensus 365 ----------------------~~~iRis~~--~~~e~i~eal~rl~~~l~~ 392 (394)
T d1c7na_ 365 ----------------------IGFERINLA--APSSVIQESLERLNKALKD 392 (394)
T ss_dssp ----------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCEEEEEEe--CCHHHHHHHHHHHHHHHHh
Confidence 379999997 4788899999998887653
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=3.1e-21 Score=212.01 Aligned_cols=327 Identities=11% Similarity=0.081 Sum_probs=207.6
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
+|+.+.+++.+.+.+....++. ... ..++|+.|++++ | .++++ |++|+|+++++.+++.++.
T Consensus 47 ~p~~i~~a~~~a~~~~~~~Y~~-----~~G----~~~LR~aia~~~~~~~g~~~~~~~--i~i~~G~~~~~~~~~~~~~- 114 (395)
T d1xi9a_ 47 PPEHMKEAYCKAIKEGHNYYGD-----SEG----LPELRKAIVEREKRKNGVDITPDD--VRVTAAVTEALQLIFGALL- 114 (395)
T ss_dssp CCHHHHHHHHHHHHTTCCSCCC-----TTC----CHHHHHHHHHHHHHHHCCCCCGGG--EEEESHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhcCCCCCCC-----CCC----CHHHHHHHHHhhhhcccccccccc--cccccccchhhhhhhhhhc-
Confidence 4566777777776543222222 122 556667666664 4 45555 9999999999999999998
Q ss_pred CCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHH
Q psy16512 147 NEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSW 222 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~ 222 (815)
.+|| |++..+.|+.+......++... .++...++ ..+.+.+.+ .+.++++++++++|+||||.+++.++
T Consensus 115 ~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~-------~~~~~~~~v~l~~P~NPTG~~~s~~~ 187 (395)
T d1xi9a_ 115 DPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRK-------KITDRTKAIAVINPNNPTGALYDKKT 187 (395)
T ss_dssp CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHH-------hhcccccEEEecCCCCCccchhhHHH
Confidence 9999 8888988877766666554443 45544433 344455443 34578999999999999999999888
Q ss_pred HHHHhhccccccccccCCCCeEEEEecccccCCC---CC---CCCCCCCcEEEEccccccccCCc--ceEEEEecc--cc
Q psy16512 223 CNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---ML---DLKQHQPDFISISFYKMFGYPTG--LGALIVKQK--SA 292 (815)
Q Consensus 223 I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~---dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~--~~ 292 (815)
+.++++ .|++++++++.|.++..-.. .. .+.....-+++.|++|.|+ .+| +||+++... .+
T Consensus 188 ~~~l~~--------~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~-~~GlRvG~~~~~~~~~~~ 258 (395)
T d1xi9a_ 188 LEEILN--------IAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYF-ATGWRLGYMYFVDPENKL 258 (395)
T ss_dssp HHHHHH--------HHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTC-CGGGCCEEEEEECTTCTT
T ss_pred HHHHHh--------hhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcc-cchhhcEeeEecCHHHHH
Confidence 766666 44589999999988653211 11 1111223477889999999 447 899887532 22
Q ss_pred cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHhccc
Q psy16512 293 HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKSFTNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 293 ~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~~~~~~~l~~~l~~~L~~l~~ 371 (815)
..+...... .......++..+..++..++..... +....+++++.++.+.+.|.++
T Consensus 259 ~~~~~~~~~---------------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 315 (395)
T d1xi9a_ 259 SEVREAIDR---------------------LARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEI-- 315 (395)
T ss_dssp HHHHHHHHH---------------------HHHHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHH---------------------hhcCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 212111000 0001123344444444444432111 1112266778888899999887
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
+++.+..|.+ +.++++.++..... -+...+.+++.++||.+.+|+.|....
T Consensus 316 ----~~~~~~~p~g-------g~~~~~~l~~~~~~-~~~~~~~~ll~~~gV~v~PG~~Fg~~~----------------- 366 (395)
T d1xi9a_ 316 ----PGISTTKPQG-------AFYIFPKIEVGPWK-NDKEFVLDVLHNAHVLFVHGSGFGEYG----------------- 366 (395)
T ss_dssp ----TTEECCCCCB-------SSEECCEECSCSCS-SHHHHHHHHHHHHCEECEEGGGGCGGG-----------------
T ss_pred ----CCceecCCCe-------eEEEeEECCCCCCC-CHHHHHHHHHHhCCEEEEcChhhCCCC-----------------
Confidence 5677665543 66677777642211 112235566788999999987654211
Q ss_pred cCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++||+++ .+.|+++..++.|.+++.+
T Consensus 367 ----------------~~~~Ris~~--~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 367 ----------------AGHFRAVFL--PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp ----------------TTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 378999986 4789999999999988765
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.6e-20 Score=204.64 Aligned_cols=364 Identities=12% Similarity=0.100 Sum_probs=240.6
Q ss_pred chHHHHHHhcCC-CCcccCCCcCCCCcccCCCcceeeeccccccchhhhhhhhccc---c-cchhhHHHHHHHHhhcccc
Q psy16512 17 VGEFQDAAFKLP-ISTVNNPVYTEPPIKTKFGYHIIMVEGKNHLKDICYLDYTGAG---V-YSQSQMNQTIEQLKENIFS 91 (815)
Q Consensus 17 ~~~f~~a~~~l~-~g~is~~~~~~~pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~---~-~p~~v~~al~~~l~~~~~~ 91 (815)
-..|++++...+ .|-+..+ .++...-|-+| .+++ +.|+|.++.. + ..+.+.++..+.+.+...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~----~~~~~~~g~~i-~~~g------~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~ 71 (383)
T d1bs0a_ 3 QEKINAALDARRAADALRRR----YPVAQGAGRWL-VADD------RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIG 71 (383)
T ss_dssp HHHHHHHHHHCCGGGCCCCC----CCCSBCSSSEE-EETT------EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhCCCccc----cccCCCCCCeE-EECC------eEEEEEEcccccccCCCHHHHHHHHHHHHHhCCC
Confidence 456777776665 3444332 25555566554 3433 2344433322 1 2466777777776653333
Q ss_pred CCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHh
Q psy16512 92 HPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELV 168 (815)
Q Consensus 92 np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~ 168 (815)
...+. ....+. ..++++.||+++|.+. .++.++++.|+..++.++. .++| +++....|.++.......
T Consensus 72 ~~~sr~~~g~~~~----~~~lE~~LA~~~g~e~----al~~~SG~~an~~~i~al~-~~~d~v~~d~~~h~si~~g~~~~ 142 (383)
T d1bs0a_ 72 SGGSGHVSGYSVV----HQALEEELAEWLGYSR----ALLFISGFAANQAVIAAMM-AKEDRIAADRLSHASLLEAASLS 142 (383)
T ss_dssp CCSBTTTTCCCHH----HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHTS
T ss_pred CCccccccCcchH----HHHHHHHHHHhcCCCc----eEEecccchhhHHHHHhhc-CCCceEEeeccccHHHhhccccC
Confidence 33322 333444 7899999999999754 6777888889999999998 8899 777778888876654432
Q ss_pred hccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEe
Q psy16512 169 KTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLD 248 (815)
Q Consensus 169 ~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD 248 (815)
... .+.+..++..+ +++.+. ...+++++|+++.+++++|.+.|+++|.++|+ +||++++||
T Consensus 143 ~~~-~~~~~hnd~~~---le~~l~----~~~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~-----------~~~~~livD 203 (383)
T d1bs0a_ 143 PSQ-LRRFAHNDVTH---LARLLA----SPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ-----------QHNGWLMVD 203 (383)
T ss_dssp SSE-EEEECTTCHHH---HHHHHH----SCCSSCEEEEEESBCTTTCCBCCHHHHHHHHH-----------HTTCEEEEE
T ss_pred CCc-ceEecchHHHH---HHHHhc----ccCCCceEEEecCCCCCCCcccchhHHHHHHH-----------hcCcEEEee
Confidence 211 44444433333 333222 33456789999999999999999999999999 899999999
Q ss_pred cccccCCCCCCCC------CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCcc
Q psy16512 249 AATYCGSNMLDLK------QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLF 322 (815)
Q Consensus 249 ~a~~~g~~~~dl~------~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~ 322 (815)
++|++|....+.. ....++++.++.|.+|.+ .|++..+.+..+.++..- .
T Consensus 204 eah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~--Gg~v~~~~~~~~~l~~~~--~-------------------- 259 (383)
T d1bs0a_ 204 DAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVS--GAAVLCSSTVADYLLQFA--R-------------------- 259 (383)
T ss_dssp CTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSC--CEEEEECHHHHHHHHHHC--H--------------------
T ss_pred cceeeeecCCcccchHHHcCCcccccccccccccccc--ccccccchhHHHHHHhhc--h--------------------
Confidence 9999986543321 235788999999999944 367777776665543211 0
Q ss_pred ccccCCCCChhHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEE
Q psy16512 323 EKFEDGTVNYLAIISLKYGFDTMEKKRK--SFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNL 400 (815)
Q Consensus 323 ~~~~~gt~~~~~~~al~~al~~l~~~~~--~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~ 400 (815)
........+.+...++.++++.+..... ..++..++..++.+.|.++ ++.+.... ++|+.+.+
T Consensus 260 ~~~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-------g~~~~~~~--------s~Ii~v~~ 324 (383)
T d1bs0a_ 260 HLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-------PFTLADSC--------SAIQPLIV 324 (383)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-------SCEECSCC--------SSBCCEEE
T ss_pred hhhhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhc-------CCccCCCC--------CCEEEEEE
Confidence 0122334555666677778877765432 2277788889999999887 56655322 56766666
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN 480 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t 480 (815)
.+... ...+.+.|.++||.+.+..+...+. ....+|++++.++|
T Consensus 325 g~~~~----a~~~~~~L~~~Gi~v~~~~~PtVp~--------------------------------g~~~lRi~~~a~ht 368 (383)
T d1bs0a_ 325 GDNSR----ALQLAEKLRQQGCWVTAIRPPTVPA--------------------------------GTARLRLTLTAAHE 368 (383)
T ss_dssp ESHHH----HHHHHHHHHHTTEECCEECTTSSCT--------------------------------TCEEECCBCCTTCC
T ss_pred CCHHH----HHHHHHHHHHCCceEEEEcCCCCCC--------------------------------CCceEEEEeCCCCC
Confidence 54221 1257888999999997643322111 13679999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy16512 481 WDDVKYFLSFLNQY 494 (815)
Q Consensus 481 ~edi~~lv~~L~~~ 494 (815)
+||||+++++|+.+
T Consensus 369 ~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 369 MQDIDRLLEVLHGN 382 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.3e-20 Score=206.35 Aligned_cols=353 Identities=11% Similarity=0.056 Sum_probs=234.3
Q ss_pred CCcccCCCcceeeeccccccchhhhhhhhccc---c-cchhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHH
Q psy16512 40 PPIKTKFGYHIIMVEGKNHLKDICYLDYTGAG---V-YSQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTK 113 (815)
Q Consensus 40 ~pv~t~fGyhIi~ved~~~~~~~iyLd~a~~~---~-~p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~ 113 (815)
+++++.-|-+|--. ++..|+|.++.. + ..+.+.++..+.+.....+...+. ...... .+++++.
T Consensus 29 ~~i~~~~g~~v~~~------dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~----~~~lE~~ 98 (401)
T d1fc4a_ 29 RIITSAQQADITVA------DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDS----HKELEQK 98 (401)
T ss_dssp CCBCSCSSSEEEBT------TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHH----HHHHHHH
T ss_pred eeccCCCCCeEEec------CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHH----HHHHHHH
Confidence 35556666543222 233455544322 1 257788887777654322222221 223444 7899999
Q ss_pred HHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhh
Q psy16512 114 ILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 114 la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~ 192 (815)
+++++|.+. ++++++++.|+..++.++. .++| +++....|.++.......... ...+...+..+++.+.+.
T Consensus 99 lA~~~g~e~----al~~~SG~~An~~~i~~l~-~~~d~i~~d~~~h~s~~~G~~~~~a~-~~~~~~~d~~~le~~~~~-- 170 (401)
T d1fc4a_ 99 LAAFLGMED----AILYSSCFDANGGLFETLL-GAEDAIISDALNHASIIDGVRLCKAK-RYRYANNDMQELEARLKE-- 170 (401)
T ss_dssp HHHHHTCSE----EEEESCHHHHHHTTHHHHC-CTTCEEEEETTCCHHHHHHHHTSCSE-EEEECTTCHHHHHHHHHH--
T ss_pred HHHhhcCCc----eEEecchhhhhHHHHHHhc-CCCcEEEeCCcchHHHHccccccCce-EEEEcCCChHHHHHHHHH--
Confidence 999999754 7888999999999999998 8899 777788999887654443222 222222222233332221
Q ss_pred hhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC--------CCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--------QHQ 264 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--------~~~ 264 (815)
.. ....++.+|++.++.++.|.+.|+++|.++|+ ++|+++++|++|+.|..-.+.. .-.
T Consensus 171 -~~-~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~-----------~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~ 237 (401)
T d1fc4a_ 171 -AR-EAGARHVLIATDGVFSMDGVIANLKGVCDLAD-----------KYDALVMVDDSHAVGFVGENGRGSHEYCDVMGR 237 (401)
T ss_dssp -HH-HTTCSSEEEEEESEETTTTEECCHHHHHHHHH-----------HTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTC
T ss_pred -hh-hcccCceEEEEcCCCCCCCchhhhhHHHHHHh-----------hcCcEEEehhhhccccccCCCCccchhccCCCC
Confidence 11 22345689999999999999999999999999 8999999999999876432211 125
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
+|+++.|++|.||++. .|++..++++++.++.... .......++.....++..+++.
T Consensus 238 ~dii~~tl~Ka~gg~~-Gg~v~g~~~~~~~l~~~~~----------------------~~~~s~~l~p~~~~aa~~~l~~ 294 (401)
T d1fc4a_ 238 VDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSR----------------------PYLFSNSLAPAIVAASIKVLEM 294 (401)
T ss_dssp CSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCH----------------------HHHHSCCCCHHHHHHHHHHHHH
T ss_pred CeEEEeecccccccCC-cccccCCHHHHHHHHcCCh----------------------hhhhcCCCCHHHHHHHHhhhcc
Confidence 8999999999997553 4777778777655421110 0122335566666666677776
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.......++..++.+++.+.+... ++.+... .++++.+.+.+... ...+.+.|.++||.+
T Consensus 295 ~~~~~~~~~~l~~~~~~~~~~l~~~-------g~~~~~~--------~~pIv~v~~~~~~~----a~~~~~~L~~~Gi~v 355 (401)
T d1fc4a_ 295 VEAGSELRDRLWANARQFREQMSAA-------GFTLAGA--------DHAIIPVMLGDAVV----AQKFARELQKEGIYV 355 (401)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHT-------TCCBCCS--------SSSEEEEEEECHHH----HHHHHHHHHHTTEEC
T ss_pred cccCHHHHHHHHHHHHHHHhhhccc-------CCccCCC--------CCCEEEEEECCHHH----HHHHHHHHHHCCceE
Confidence 6654334488999999999999887 4444432 25788777764321 225778889999998
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+-.+...+. ....||++++..+|+||||+++++|+++..+
T Consensus 356 ~~i~~PtVp~--------------------------------g~~~lRi~~~a~hT~edId~~v~al~ev~~~ 396 (401)
T d1fc4a_ 356 TGFFYPVVPK--------------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQ 396 (401)
T ss_dssp CEECTTSSCT--------------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeECCCCCCC--------------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 7533221111 1367999999999999999999999998754
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.85 E-value=1.5e-20 Score=207.82 Aligned_cols=304 Identities=11% Similarity=0.070 Sum_probs=191.9
Q ss_pred HHHHHHHHHhHc------------CCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-
Q psy16512 107 IDQMRTKILQYF------------NTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ- 172 (815)
Q Consensus 107 ~~~~r~~la~~~------------g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g- 172 (815)
..++|+.+++++ ++++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+....+.++...
T Consensus 74 ~~~LReaia~~~~~~~~~~~~~~~~~~~~~--I~it~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~ 150 (412)
T d1bw0a_ 74 SPEAREAVATWWRNSFVHKEELKSTIVKDN--VVLCSGGSHGILMAITAIC-DAGDYALVPQPGFPHYETVCKAYGIGMH 150 (412)
T ss_dssp CHHHHHHHHHHHHHHHCCSTTTGGGCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHhcCcccccCCCCCCCe--EEEecccccchhhhhhhhh-ccccceeeeeccchhhhhhhhccCcccc
Confidence 566777777765 255666 9999999999999999998 9999 8999988887766665554433
Q ss_pred eEEcCchhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 173 IYSFSVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 173 ~v~~~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
.++++.++. .+.+.+++ ...++++++++++++||||.+++.+++.++++ .|++++++||+|++
T Consensus 151 ~v~~~~~~~~~~~~~~l~~-------~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~--------~~~~~~~~vi~De~ 215 (412)
T d1bw0a_ 151 FYNCRPENDWEADLDEIRR-------LKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVR--------LAEELRLPLFSDEI 215 (412)
T ss_dssp EEEEEGGGTTEECHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCCEEEECT
T ss_pred ccccccccccchhhHHHHh-------hhhccccccccccccccccccchhhhcccccc--------ccccCCeeeechhh
Confidence 566655443 33333332 44577999999999999999999888777766 44489999999988
Q ss_pred ccc----CCCCCC-------CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccccc
Q psy16512 251 TYC----GSNMLD-------LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIK 317 (815)
Q Consensus 251 ~~~----g~~~~d-------l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~ 317 (815)
+.. +..+.. ......-+++.|++|.|+ .+| +||+++.+.......... ....
T Consensus 216 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~-~~G~RvG~~~~~~~~~~~~~~~~-~~~~------------- 280 (412)
T d1bw0a_ 216 YAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV-VPGWRLGWLLYVDPHGNGPSFLE-GLKR------------- 280 (412)
T ss_dssp TTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS-CGGGCCEEEEEECTTCSCHHHHH-HHHH-------------
T ss_pred HHHhccCCCCCccccccccccccccccccccccCccCc-cCCCCcccccccchhhcchhhhh-hhcc-------------
Confidence 652 111111 111122367779999999 447 899999876543211000 0000
Q ss_pred ccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 318 KDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 318 ~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
......++.+.....++........+.-..+ ++..+.++++.+.|.+. +++....|.+ +.++
T Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~------~g~~~~~p~g-------g~~l 343 (412)
T d1bw0a_ 281 ----VGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC------IGLAPTMPRG-------AMYL 343 (412)
T ss_dssp ----HHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTS------TTEEECCCCB-------TTEE
T ss_pred ----ccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHHh------cCceecCCCC-------ceEE
Confidence 0011112222222222211111111111122 66777788888888776 6888876654 6677
Q ss_pred EEEEecCCCCc-cCHHH-HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEe
Q psy16512 397 NFNLLHKDGTY-YGYSE-VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRIS 474 (815)
Q Consensus 397 ~f~~~~~~~~~-~~~~~-v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs 474 (815)
+.+++...... .+..+ +.++|.++||.+.+|+.|.. +|++|||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-----------------------------------~g~iRis 388 (412)
T d1bw0a_ 344 MSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-----------------------------------PGFTRLT 388 (412)
T ss_dssp EEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-----------------------------------TTEEEEE
T ss_pred EEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCC-----------------------------------CCeEEEE
Confidence 77775321111 12223 44556778999998865421 3799999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 475 YGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 475 ~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++ .++++++..++.|++++..
T Consensus 389 ~~--~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 389 TT--RPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp CC--SCHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCHHHHHHHHHHHHHHHHh
Confidence 86 4788899999999887643
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.84 E-value=3.2e-20 Score=201.14 Aligned_cols=320 Identities=10% Similarity=0.063 Sum_probs=212.7
Q ss_pred chhhHHHHHHHHhhccccCCCCh--hhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhc-cCCCc
Q psy16512 74 SQSQMNQTIEQLKENIFSHPHGN--SVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFE-FNEGS 150 (815)
Q Consensus 74 p~~v~~al~~~l~~~~~~np~s~--~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~-~~~gd 150 (815)
.+.+.++..+.+.....+...+. ...... .+++++.+|+++|.+. .++.+++..|+..++.++. ..+++
T Consensus 61 ~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~----h~~LE~~lA~~~g~e~----all~~sG~~An~~~i~~l~~~~~~d 132 (396)
T d2bwna1 61 HPVVLAAMHEALEAVGAGSGGTRNISGTTAY----HRRLEAEIAGLHQKEA----ALVFSSAYNANDATLSTLRVLFPGL 132 (396)
T ss_dssp CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHH----HHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHhCCCccccccccCCchH----HHHHHHHHHHHhCCCc----eeeeecchHHHHHHHHHHhcccCCC
Confidence 35667777776665333332222 334444 7899999999999864 4555666678888888874 26788
Q ss_pred -EEEecCCCcchhhHHHHhhccceEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhc
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQIYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRN 229 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~ 229 (815)
++.....|.|+.......+.. ...+..++..+++.+. +.....+.++|++..+.+++|.+.|+++|.++++
T Consensus 133 ~i~~D~~~Hasi~~g~~ls~a~-~~~f~Hnd~~~l~~l~------~~~~~~~~~~iv~egvySmdGd~apl~~l~~L~~- 204 (396)
T d2bwna1 133 IIYSDSLNHASMIEGIKRNAGP-KRIFRHNDVAHLRELI------AADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE- 204 (396)
T ss_dssp EEEEETTCCHHHHHHHHHSCCC-EEEECTTCHHHHHHHH------HHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH-
T ss_pred ceeehhhhhhccchhhhccccC-ceEeecchHHHhhhHH------hhhcccCceeEEEEeeccCcccccccHhHHHHhh-
Confidence 555677888887666554332 3334433333332222 1122345789999999999999999999999999
Q ss_pred cccccccccCCCCeEEEEecccccCCCCCCCC--------CCCCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 230 HVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK--------QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 230 ~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~--------~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
++|++++||+||++|..-.+-. ...+|+++.|++|.||+. | |++..+++.++.++..-
T Consensus 205 ----------~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~-G-g~v~~~~~~i~~l~~~~-- 270 (396)
T d2bwna1 205 ----------EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVF-G-GYIAASARMVDAVRSYA-- 270 (396)
T ss_dssp ----------HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSC-C-EEEEECHHHHHHHHHHC--
T ss_pred ----------hhcceeeeccceeeeeeccccccchhhcCCceeeeeeeeccccccccc-c-cccchhHHHHHHHHhhc--
Confidence 8999999999999987532221 124799999999999933 3 67778877766553111
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKR-KSF-TNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~-~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
. ....++.++.+.+.++.++++.+.... ... ++...+.+++.+.+..+ ++.
T Consensus 271 ~--------------------~~ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~-------g~~ 323 (396)
T d2bwna1 271 P--------------------GFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL-------GMP 323 (396)
T ss_dssp H--------------------HHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-------TCC
T ss_pred c--------------------hhhhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc-------CCC
Confidence 0 012234566677777777888765432 222 66677788888888887 454
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHh-hhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCC
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNL-ANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGD 458 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~-l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~ 458 (815)
+... .++|+.+.+.+.... ..+.+. |.++||.+.+..+...+.
T Consensus 324 ~~~~--------~spIvpv~ig~~~~~----~~~a~~lL~e~Gi~v~~i~~PtVp~------------------------ 367 (396)
T d2bwna1 324 IIDH--------GSHIVPVVIGDPVHT----KAVSDMLLSDYGVYVQPINFPTVPR------------------------ 367 (396)
T ss_dssp BCCC--------SSSCEEEECCCHHHH----HHHHHHHHHHHCEECCEECTTTSCT------------------------
T ss_pred cCCC--------CCCEEEEEeCCHHHH----HHHHHHHHHhCCEEEEEECCCcCCC------------------------
Confidence 4422 268888877542211 134444 668899987654322111
Q ss_pred cccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 459 DKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 459 ~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
....+|++++..+|++|||+++++|+++
T Consensus 368 --------g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 368 --------GTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp --------TCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred --------CCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 1257999999999999999999999985
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=3.1e-20 Score=205.58 Aligned_cols=307 Identities=11% Similarity=0.062 Sum_probs=198.7
Q ss_pred HHHHHHHHHhHc----CCCCC-ceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch
Q psy16512 107 IDQMRTKILQYF----NTDSD-HYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD 179 (815)
Q Consensus 107 ~~~~r~~la~~~----g~~~~-~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~ 179 (815)
..++|+.|++++ |.+.+ ..+|++|+|+++|+.++++++. .+|+ +++....++.+..+....+... .++..+.
T Consensus 66 ~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~-~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~ 144 (418)
T d1w7la_ 66 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV-DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPG 144 (418)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhhc-cCCceeeccccccchhHHHHHHcCCEeeccccccc
Confidence 556777777664 65532 1249999999999999999998 8999 8888888888877777766554 3333221
Q ss_pred ----------hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEec
Q psy16512 180 ----------DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDA 249 (815)
Q Consensus 180 ----------~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~ 249 (815)
..+.++..+ ......++++++++++++||||..++.+++.++++ .|+++++++|.|+
T Consensus 145 ~~~~~~~~~~~~~~~d~~~-----~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~--------~a~~~~v~vI~De 211 (418)
T d1w7la_ 145 PIQNGELGSSSNWQLDPME-----LAGKFTSRTKALVLNTPNNPLGKVFSREELELVAS--------LCQQHDVVCITDE 211 (418)
T ss_dssp C---CCSEEGGGEECCHHH-----HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEC
T ss_pred cccccccccccCcccchhh-----hhccccccccceeccCcCCcccccccHHHHHHHHH--------HHHhcCCCchhhh
Confidence 111122111 12245678999999999999999999887666555 3348999999998
Q ss_pred cccc----CCCCCC---CCCC-CCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccccccc
Q psy16512 250 ATYC----GSNMLD---LKQH-QPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 250 a~~~----g~~~~d---l~~~-~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
++.. +..+.+ +... +..+++.|++|.++.| | +||+++++++++.+....
T Consensus 212 ~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p-G~RvG~~v~~~~~~~~l~~~~-------------------- 270 (418)
T d1w7la_ 212 VYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT-GWKVGWVLGPDHIMKHLRTVH-------------------- 270 (418)
T ss_dssp TTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG-GGCCEEEECCHHHHHHHHHHH--------------------
T ss_pred hhHHhhcCCCCCCCHHHccccccccceecccCccccCC-CCcccccccchhhhhhhcccc--------------------
Confidence 8643 111122 2222 2357888999998845 6 899999988766553321
Q ss_pred CccccccCCCCChhHHHHHHHHHHHHHhhhh-------hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-------SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-------~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
.......+.....++..++........ .+ ++.++.++.+.+.|.++ ++++..|.+
T Consensus 271 ----~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~P~g------ 333 (418)
T d1w7la_ 271 ----QNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-------GLKPLIPQG------ 333 (418)
T ss_dssp ----HTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-------TCEEEECSB------
T ss_pred ----ccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhhc-------CCcccCCCc------
Confidence 111223344444444455544332111 11 66677788888888886 677776654
Q ss_pred ccceEEEEEecC----------CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCccc
Q psy16512 392 QGNIVNFNLLHK----------DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKD 461 (815)
Q Consensus 392 ~~~i~~f~~~~~----------~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~ 461 (815)
+.++++++++. .....+...+.++|+++||.+.+|+.|......
T Consensus 334 -g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~------------------------- 387 (418)
T d1w7la_ 334 -SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQ------------------------- 387 (418)
T ss_dssp -SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHH-------------------------
T ss_pred -eeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCCCcc-------------------------
Confidence 67777777521 011112223556678999999999765432111
Q ss_pred ccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 462 IIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 462 ~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+...++||||+. +++++++.+++.|+++..
T Consensus 388 ---~~~~~~iRis~~--~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 388 ---KHFDHYIRFCFV--KDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp ---TTSCSEEEEECC--CCHHHHHHHHHHHHHHHC
T ss_pred ---CCCCCEEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 111489999985 588999999999998653
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=3.8e-20 Score=198.61 Aligned_cols=313 Identities=11% Similarity=0.077 Sum_probs=207.0
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.++++|+++.|.+. .+.++++.+|+..++.++. ++|| +|++...|..... +...+.+.| ...++..
T Consensus 61 ~~~LE~~la~LEg~~~----a~~~~SGmaAi~~~l~~l~-~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~~--- 132 (392)
T d1gc0a_ 61 LNLLEARMASLEGGEA----GLALASGMGAITSTLWTLL-RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA--- 132 (392)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCcc----eeehhhHHHHHHHHHHhhc-cCCCeeecccccchhhhhhhhhhhccCCcccccCCcc---
Confidence 7889999999999754 5666777889999999998 9999 8888877776655 445566667 3333332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ +++++|++|++.++.||+..+.|++.|+++|| ++|++++||.+.+.|...-++ +
T Consensus 133 d~~~~~~-------ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~-----------~~g~~~vvDnT~atP~~~~Pl-~ 193 (392)
T d1gc0a_ 133 DLQALEA-------AMTPATRVIYFESPANPNMHMADIAGVAKIAR-----------KHGATVVVDNTYCTPYLQRPL-E 193 (392)
T ss_dssp CHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHG-----------GGTCEEEEECTTTHHHHCCGG-G
T ss_pred CHHHHHH-------hCCCCCeEEEecccccceeeecchHHHHHHHH-----------hcCCEEEEecCccCccccChH-H
Confidence 3344444 44588999999999999999999999999999 899999999998877542223 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|.+|+++|... .|+++++++.+++++-.. .++...++++....+.+..
T Consensus 194 ~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~----------------------~~~~~G~~~~p~da~ll~r 251 (392)
T d1gc0a_ 194 LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQG----------------------LKDMTGAVLSPHDAALLMR 251 (392)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTH----------------------HHHHTCCCCCHHHHHHHHH
T ss_pred hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHH----------------------HHHccCCcCChhhHHHHHh
Confidence 5899999999999995543 577777776654331110 1123455667777776666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhcc------cc--CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLS------YS--NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~------~~--~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
+++.+. .++++..+.+..+.+.|++.+ |+ .++|..++.... ....+++++|.+.+... . ...
T Consensus 252 gl~TL~---lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~----~~~~gg~~sf~l~~~~~-~--~~~ 321 (392)
T d1gc0a_ 252 GIKTLN---LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQ----MSQPGGMIAFELKGGIG-A--GRR 321 (392)
T ss_dssp HHTTHH---HHHHHHHHHHHHHHHHHHTCTTEEEEEEC--------------------CCTTEEEEEETTHHH-H--HHH
T ss_pred ccccHH---HHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCccccccccc----ccCCCcEEEEEEeCCHH-H--HHH
Confidence 666544 245777777778888887762 11 122333322221 23348899999964211 1 123
Q ss_pred HHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
+.+.|+...+..+.|... .++....+..++++..... |.+++.||+|+|.++.++-++.|-+
T Consensus 322 f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~---------------Gi~~~liRlSVGlEd~eDLi~Dl~~ 386 (392)
T d1gc0a_ 322 FMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHY---------------GISEGLVRLSVGLEDIDDLLADVQQ 386 (392)
T ss_dssp HHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHT---------------TCCTTEEEEECCSSCHHHHHHHHHH
T ss_pred HHHhCCcceEeeccCCcChhhcCccccccccCCHHHHHHc---------------CCCcCeEEEEeeeCCHHHHHHHHHH
Confidence 555666556666666432 2344444556666554332 5667999999998776666666666
Q ss_pred HHHH
Q psy16512 490 FLNQ 493 (815)
Q Consensus 490 ~L~~ 493 (815)
+|+.
T Consensus 387 AL~a 390 (392)
T d1gc0a_ 387 ALKA 390 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.83 E-value=6.4e-20 Score=202.08 Aligned_cols=305 Identities=10% Similarity=0.071 Sum_probs=192.2
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ |++|+|+++++.+++.++. ++|| +++..+.|+.+......++... .++.+.
T Consensus 73 ~~~lR~aia~~l~~~~g~~~~~~~--I~it~G~~~al~~~~~~l~-~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~ 149 (403)
T d1wsta1 73 FTPLRLALARWMEKRYDIPMSKVE--IMTVAGSQQALDLIGRVFL-NPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDD 149 (403)
T ss_dssp CHHHHHHHHHHHHHHHCCCCTTCE--EEEESSHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHhCCCCChHH--eeecccchHHHHHHHHHHh-hcCCccccCCCcchhhhHHHhhccccceeEeecc
Confidence 667788888775 3 55665 9999999999999999998 8999 8888888877766655544333 445443
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc----C
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC----G 254 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~----g 254 (815)
++. +................+.+.++++++++||||.+++.+++.++++ +|++|+++||+|+++.- +
T Consensus 150 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~--------~a~~~~~~li~De~y~~l~~~~ 220 (403)
T d1wsta1 150 KGM-RVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLE--------LANEYDFLIVEDGPYSELRYSG 220 (403)
T ss_dssp TEE-CHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEECTTTTCBCSS
T ss_pred cCC-ccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHH--------HHHhcCceeccccchhheecCC
Confidence 221 1111111111112233455788999999999999999887666554 34489999999988752 1
Q ss_pred CCCCC---CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCC
Q psy16512 255 SNMLD---LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 255 ~~~~d---l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
..... ....+..+++.|++|+++ | | +||++.++++++.+.... ......
T Consensus 221 ~~~~~~~~~~~~~~~i~~~S~SK~~~-~-G~RiG~~i~~~~~i~~~~~~~------------------------~~~~~~ 274 (403)
T d1wsta1 221 EPTPPIKHFDDYGRVIYLGTFSKILA-P-GFRIGWVAAHPHLIRKMEIAK------------------------QSIDLC 274 (403)
T ss_dssp CCCCCGGGGCSSSCEEEEEESTTTTC-G-GGCCEEEEECHHHHHHHHHHH------------------------HHHHSS
T ss_pred CCCCcccccCCCCcEEEEccccceec-C-cccccccccchHHHHHHHHHH------------------------hhhccc
Confidence 11111 123345688899999987 6 5 899999888765442211 011112
Q ss_pred CChhHHHHHHHHHHH--HHhhhhh-HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC-CC
Q psy16512 330 VNYLAIISLKYGFDT--MEKKRKS-FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK-DG 405 (815)
Q Consensus 330 ~~~~~~~al~~al~~--l~~~~~~-~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~-~~ 405 (815)
.+.....+..+.+.. ....-.. .+.....++.+.+.|.+.. ..++....|.+ +.++++.++.. +.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~p~g-------g~~~~~~~~~~~~~ 343 (403)
T d1wsta1 275 TNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYM----PEGVEWTKPEG-------GMFVRVTLPEGIDT 343 (403)
T ss_dssp CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CTTCEECCCSB-------SSEEEEECCTTCCT
T ss_pred cccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhc----cCCeEEeCCCc-------eeEEEEECCCCCCH
Confidence 233333332222221 1111111 2555666667777776541 12456665543 67788888753 33
Q ss_pred CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 406 TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 406 ~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
. .+.+.|.++||.+.+|+.|... +...+++||+++. .++++++
T Consensus 344 ~-----~~~~~l~~~gV~v~pg~~f~~~-------------------------------~~~~~~iRi~~~~-~~~~~l~ 386 (403)
T d1wsta1 344 K-----LMMERAVAKGVAYVPGEAFFVH-------------------------------RDKKNTMRLNFTY-VPEETIR 386 (403)
T ss_dssp T-----TTHHHHHHTTEECEEGGGGSTT-------------------------------CCCCSEEEEECSS-SCHHHHH
T ss_pred H-----HHHHHHHHCCEEEEechhhcCC-------------------------------CCCCCEEEEEecC-CCHHHHH
Confidence 3 3777888999999988654321 1124899999975 4788999
Q ss_pred HHHHHHHHHHhh
Q psy16512 486 YFLSFLNQYFLQ 497 (815)
Q Consensus 486 ~lv~~L~~~~~~ 497 (815)
..++.|.+++++
T Consensus 387 ~al~rl~~~l~~ 398 (403)
T d1wsta1 387 EGVRRLAETIKE 398 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=7.9e-20 Score=199.80 Aligned_cols=322 Identities=12% Similarity=0.033 Sum_probs=204.8
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHc----CCCCCc-eeEEecCCchhhHHHHHhhhccC
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYF----NTDSDH-YSVIFTSGATSAIKTVSEYFEFN 147 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~----g~~~~~-~~iv~t~g~t~al~~~~~al~~~ 147 (815)
+|+.+.+++.+.+.+..++++ .... ..++|+.+++++ |.+.+. ..|++|+|+++|+.++++++. +
T Consensus 40 ~p~~i~~a~~~~~~~~~~~Y~-----~~~G----~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~-~ 109 (382)
T d1u08a_ 40 GPRYLQERLAHHVAQGANQYA-----PMTG----VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-R 109 (382)
T ss_dssp CCHHHHHHHHHHHHTTCCSCC-----CTTC----CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-C
T ss_pred CCHHHHHHHHHHHhcCCCCCC-----CCcC----CHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhcc-c
Confidence 355666777666654332222 2222 567777777764 544321 139999999999999999999 9
Q ss_pred CCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh-hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHH
Q psy16512 148 EGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD-ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCN 224 (815)
Q Consensus 148 ~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~-~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~ 224 (815)
+|| +++....|+.+.......+... .++.+.++ ..+.++++. ...++++++++++||||||.+++.+++.
T Consensus 110 ~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~-------~~~~~~~~i~l~~P~NPtG~v~~~~~~~ 182 (382)
T d1u08a_ 110 NGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAA-------LLSERTRLVILNTPHNPSATVWQQADFA 182 (382)
T ss_dssp TTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHH
T ss_pred ccceEEEecccccchhhhhhhccccceecccccccccCCHHHHhh-------hhccCccEEEECCCCcccccccccccch
Confidence 999 8888877777655544443222 44444332 334444433 4457899999999999999999998877
Q ss_pred HHhhccccccccccCCCCeEEEEecccccCCC----CCCCCC----CCCcEEEEccccccccCCc--ceEEEEecccccc
Q psy16512 225 TVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN----MLDLKQ----HQPDFISISFYKMFGYPTG--LGALIVKQKSAHV 294 (815)
Q Consensus 225 ~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~----~~dl~~----~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~ 294 (815)
++++ .|++++++++.|........ +..... ...-+++.|++|.++.| | +||++++++.++.
T Consensus 183 ~l~~--------~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~p-G~RiG~~v~~~~~~~~ 253 (382)
T d1u08a_ 183 ALWQ--------AIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMT-GWKVGYCVAPAPISAE 253 (382)
T ss_dssp HHHH--------HHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCG-GGCCEEEECCHHHHHH
T ss_pred hhhh--------hhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCC-cccchhhhccchhHHH
Confidence 7766 44589999998877543221 111101 12348889999999844 7 8999998887665
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccC
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSN 373 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~ 373 (815)
+.... .......+.....++..+++.-.+....+ ++.++.++.+.+.+...
T Consensus 254 ~~~~~------------------------~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 305 (382)
T d1u08a_ 254 IRKVH------------------------QYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNES---- 305 (382)
T ss_dssp HHHHH------------------------HHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTSS----
T ss_pred HHhhh------------------------cccccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhccC----
Confidence 43221 11123445556666656655322222222 66666777777666543
Q ss_pred CCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 374 GQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 374 ~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
++.+..|.+ +.+++++++.... .+..++. ++|+++||.+.+|+.|...
T Consensus 306 ---g~~~~~p~g-------g~~~~~~~~~~~~--~d~~e~~~~ll~e~gV~v~PG~~F~~~------------------- 354 (382)
T d1u08a_ 306 ---RLEILPCEG-------TYFLLVDYSAVST--LDDVEFCQWLTQEHGVAAIPLSVFCAD------------------- 354 (382)
T ss_dssp ---SCEECCCCB-------SSEEEEECTTTCC--SCHHHHHHHHHHHSCEECEEGGGGCSS-------------------
T ss_pred ---CcEEecCCc-------eEEEEEecCCCCC--CCHHHHHHHHHHHCCEEEEcchhhCCC-------------------
Confidence 788876654 6677777764322 2223344 4568899999998765321
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHH
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQ 493 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~ 493 (815)
+...+++|+|+. .++|+++..++.|++
T Consensus 355 ------------~~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 355 ------------PFPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp ------------CCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred ------------CCCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 112479999996 478888888887764
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.83 E-value=3.2e-20 Score=206.29 Aligned_cols=305 Identities=12% Similarity=0.094 Sum_probs=193.0
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~ 175 (815)
..++|+.+|++++ +++++ |++|+|+++|+.+++.++. ++|| |++..+.|+.+........... .++
T Consensus 86 ~~~LR~aiA~~l~~~~~~~~~~~pe~--I~it~G~~~al~~~~~~l~-~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 162 (431)
T d1m7ya_ 86 LPAFKKAMVDFMAEIRGNKVTFDPNH--LVLTAGATSANETFIFCLA-DPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIH 162 (431)
T ss_dssp CHHHHHHHHHHHHHHTTTSSCCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHTTTTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCcce--EEECCCHHHHHHHHHHHhc-CCCCEEEEeCCCchhHHHHHHHhcCceecccc
Confidence 5577888877653 45666 9999999999999999998 9999 8888888877765544322222 455
Q ss_pred cCchhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
++.++. ++.+.+++.+.+ ......+++++++++|+||||..++.+++.++++ .|+++++++|+|++++.
T Consensus 163 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~--------~a~~~~~~vI~De~Y~~ 233 (431)
T d1m7ya_ 163 CTSSNGFQITETALEEAYQE-AEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLS--------FVEDKGIHLISDEIYSG 233 (431)
T ss_dssp CCGGGTSCCCHHHHHHHHHH-HHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTGG
T ss_pred ccchhcccccHHHhhhhhhh-hhhccCcceEEEecCccccccccccccccccccc--------cccccCcceeecccccc
Confidence 555543 445555544431 1233457899999999999999999777665555 34489999999998753
Q ss_pred CC----CCCCC-------C------CCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcc
Q psy16512 254 GS----NMLDL-------K------QHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENF 314 (815)
Q Consensus 254 g~----~~~dl-------~------~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~ 314 (815)
-. ...++ . ..+.-+++.|++|.|| .+| +|+++.+++.+.......
T Consensus 234 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~G~RiG~~~~~~~~i~~~~~~~--------------- 297 (431)
T d1m7ya_ 234 TAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG-LPGFRVGAIYSNDDMVVAAATKM--------------- 297 (431)
T ss_dssp GCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC-CGGGCEEEEEESCHHHHHHHHHH---------------
T ss_pred cccCCCCCCCHHHHhhhcccccccccCceEEEEecCccccc-CCCCccceeccchhhhHHHHHHH---------------
Confidence 21 11111 0 0012377889999999 447 899999887653221111
Q ss_pred cccccCccccccCCCCChhHHHHHHHHHH---HHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 315 HIKKDGLFEKFEDGTVNYLAIISLKYGFD---TMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 315 ~~~~~~~~~~~~~gt~~~~~~~al~~al~---~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
......+.....++.+.+. ......... ++.++.++.+.+.|++. ++.+..+.+
T Consensus 298 ----------~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-------gi~~~~p~g----- 355 (431)
T d1m7ya_ 298 ----------SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-------GISCLNGNA----- 355 (431)
T ss_dssp ----------GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------TCEECCCCS-----
T ss_pred ----------hccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-------CcEEecCCc-----
Confidence 0011222233333323222 222221222 56667777788888764 788886654
Q ss_pred cccceEEEEEecC-CCCcc-CHHH-HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 391 YQGNIVNFNLLHK-DGTYY-GYSE-VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 391 ~~~~i~~f~~~~~-~~~~~-~~~~-v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
+.+++++++.. ..... +..+ +.+++.++||.+.+|+.|... .
T Consensus 356 --g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~---------------------------------~ 400 (431)
T d1m7ya_ 356 --GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT---------------------------------E 400 (431)
T ss_dssp --SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS---------------------------------S
T ss_pred --eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCC---------------------------------C
Confidence 67777777642 11111 1112 445567889999998765321 1
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++++|++++. .++++++..++.|++++.+
T Consensus 401 ~~~~Ri~~a~-~~e~~l~~al~rL~~~l~~ 429 (431)
T d1m7ya_ 401 PGWFRVCFAN-LPERTLDLAMQRLKAFVGE 429 (431)
T ss_dssp TTEEEEECSS-SCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCc-CCHHHHHHHHHHHHHHHHH
Confidence 4899999963 3678889999988887653
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.83 E-value=4.9e-20 Score=204.56 Aligned_cols=303 Identities=13% Similarity=0.094 Sum_probs=189.1
Q ss_pred HHHHHHHHHhHcC--------CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--eEE
Q psy16512 107 IDQMRTKILQYFN--------TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYS 175 (815)
Q Consensus 107 ~~~~r~~la~~~g--------~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~ 175 (815)
..++|+.||++++ .++++ |++|+|+++|+.+++.++. .+|| |++..+.|+++........... .++
T Consensus 85 ~~~LR~aiA~~l~~~~~~~~~~~~e~--Ivit~G~~~al~~~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~ 161 (428)
T d1iaya_ 85 LPEFRKAIAKFMEKTRGGRVRFDPER--VVMAGGATGANETIIFCLA-DPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIH 161 (428)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCCCTTS--CEEEEHHHHHHHHHHHHHC-CTTCEEEEESSCCTTHHHHTTTTTCCEEEEEC
T ss_pred hHHHHHHHHHHHHHHhCCCCCCChhh--EEEcCCHHHHHHHHHHHhC-CCCCEEEEccCCchHHHHHHHHhcCCeEEEee
Confidence 5678888888752 45666 9999999999999999998 9999 8888888877765443322111 344
Q ss_pred cCchh--hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccccc
Q psy16512 176 FSVDD--ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC 253 (815)
Q Consensus 176 ~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~ 253 (815)
.+.++ ..+.+.+..++. ......++++++++++|+||||..++.+++.++++ .|++++++||+|++++.
T Consensus 162 ~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~--------~a~~~~~~vI~De~Y~~ 232 (428)
T d1iaya_ 162 CESSNNFKITSKAVKEAYE-NAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLS--------FTNQHNIHLVCDEIYAA 232 (428)
T ss_dssp CCTTTTTCCCHHHHHHHHH-HHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHTTTCEEEEECTTGG
T ss_pred cccccccccccccccchhh-hhhccCCCceEEEEccCCCcccccccccccchhhe--------eeccCcEEEEecccccc
Confidence 44333 344444443322 12234677999999999999999999766555544 33499999999998763
Q ss_pred CC----CCCC-----------CCCCCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCccc
Q psy16512 254 GS----NMLD-----------LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFH 315 (815)
Q Consensus 254 g~----~~~d-----------l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~ 315 (815)
.. ...+ .......+++.|++|.|+ .+| +|+++..++.+ +.++..
T Consensus 233 ~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~-~~GlRiG~~~~~~~~l~~~~~~~----------------- 294 (428)
T d1iaya_ 233 TVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMG-LPGFRVGIIYSFNDDVVNCARKM----------------- 294 (428)
T ss_dssp GCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSS-CGGGCEEEEEESCHHHHHHHHHH-----------------
T ss_pred cccCcccccccccccchhhccccccceEEEEecCCCccc-CCCcccccccccccchhhhhhhh-----------------
Confidence 21 1111 111123478889999998 447 89999865543 222111
Q ss_pred ccccCccccccCCCCChhHHHHHHHHHH---HHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCc
Q psy16512 316 IKKDGLFEKFEDGTVNYLAIISLKYGFD---TMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKY 391 (815)
Q Consensus 316 ~~~~~~~~~~~~gt~~~~~~~al~~al~---~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~ 391 (815)
...+..+.....++.+.+. .+...-... ++..+.++.+.+.|+.. ++++..+.+
T Consensus 295 ---------~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-------gi~~~~p~g------ 352 (428)
T d1iaya_ 295 ---------SSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-------GIKCLKNNA------ 352 (428)
T ss_dssp ---------HTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TCCBCCCSS------
T ss_pred ---------hcccccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-------CCEEecCCc------
Confidence 1111223333333322221 222221122 56666777888888765 777765543
Q ss_pred ccceEEEEEecCCC-Ccc-CHHH-HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCc
Q psy16512 392 QGNIVNFNLLHKDG-TYY-GYSE-VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPT 468 (815)
Q Consensus 392 ~~~i~~f~~~~~~~-~~~-~~~~-v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 468 (815)
+.+++++++.... ..+ +..+ ..++++++||.+.+|..|.. ..+
T Consensus 353 -g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~---------------------------------~~~ 398 (428)
T d1iaya_ 353 -GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC---------------------------------QEP 398 (428)
T ss_dssp -SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC---------------------------------SSS
T ss_pred -ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC---------------------------------CCC
Confidence 6778888764221 111 1112 34455788999999865432 114
Q ss_pred eEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 469 GSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 469 g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+++|+|++. .++++++..++.|++++.
T Consensus 399 g~~Ris~a~-~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 399 GWFRVCFAN-MDDGTVDIALARIRRFVG 425 (428)
T ss_dssp SEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-CCHHHHHHHHHHHHHHHh
Confidence 899999863 467789999999998763
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.83 E-value=5.1e-20 Score=206.66 Aligned_cols=234 Identities=10% Similarity=0.034 Sum_probs=156.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc--e--EEcCchhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ--I--YSFSVDDA 181 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~--v~~~~~~~ 181 (815)
+.++++.+|++||++. .+++++|+|+++.+++.++. ++|| ||++..+|.|++.....+...+ + ..+++.+.
T Consensus 68 i~eae~~~A~~~ga~~---a~f~~~Gtt~~n~a~i~a~~-~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~ 143 (462)
T d1c4ka2 68 AVAAEKHAARVYNADK---TYFVLGGSSNANNTVTSALV-SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGF 143 (462)
T ss_dssp HHHHHHHHHHHTTCSE---EEEESSHHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCC
T ss_pred HHHHHHHHHHHhCCCe---EEEECCchHHHHHHHHHHhc-CCCCeEEecccchHHHHHHHHHHhcCCceeeecccccccc
Confidence 8899999999999853 24444555666777788777 9999 9999999999886555444444 2 23333221
Q ss_pred ---hcchhhhh-hhh------hhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEeccc
Q psy16512 182 ---RNMLNEFK-ESQ------ENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAAT 251 (815)
Q Consensus 182 ---~~~~~~~~-~l~------~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~ 251 (815)
.+...+.+ .+. .++....+++.++++.+.+|..|.+.|+++|+++|+ ++|++|++|+||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~-----------~~g~~l~vD~A~ 212 (462)
T d1c4ka2 144 IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIG-----------HLCDYIEFDSAW 212 (462)
T ss_dssp EEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHG-----------GGBSEEEEECTT
T ss_pred cCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHH-----------HcCCEEEEechh
Confidence 11111111 010 112344567888888889999999999999999999 899999999999
Q ss_pred ccCCCCCCC-----C--------CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccc
Q psy16512 252 YCGSNMLDL-----K--------QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKK 318 (815)
Q Consensus 252 ~~g~~~~dl-----~--------~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 318 (815)
+.+....+. . ..++|++++|+||++|.+.|.+++..++..++.... +..... .
T Consensus 213 ~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~~~~~~-~~~~~~-------------~ 278 (462)
T d1c4ka2 213 VGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLR-YCDHKH-------------F 278 (462)
T ss_dssp CCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTT-CCCHHH-------------H
T ss_pred hccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccccccch-hhhHHH-------------H
Confidence 877543321 1 124599999999999966665666666655432211 100000 0
Q ss_pred cCccccccCCCCChhHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHHHHhc
Q psy16512 319 DGLFEKFEDGTVNYLAIISLKYGFDTMEKK-RKSF-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 319 ~~~~~~~~~gt~~~~~~~al~~al~~l~~~-~~~~-~~~~~l~~~l~~~L~~l 369 (815)
......++.+++++..+.++..+..++... +... ++..++++++++++.++
T Consensus 279 ~~~~~~~~t~sp~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~ 331 (462)
T d1c4ka2 279 NNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA 331 (462)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001234667889999999998888877543 3333 77888889999999876
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=1.8e-19 Score=201.04 Aligned_cols=363 Identities=11% Similarity=-0.012 Sum_probs=227.5
Q ss_pred hhhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCC-------ceeEEecCCch
Q psy16512 62 ICYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSD-------HYSVIFTSGAT 134 (815)
Q Consensus 62 ~iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~-------~~~iv~t~g~t 134 (815)
.-|+.+.-.+..+..++.++.....+. |... ......+.....++-+++++++|.+.. +-..++|+|+|
T Consensus 74 P~f~~~~~~~~~~~~~l~~~~~~~~n~---n~~~-~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs 149 (476)
T d1js3a_ 74 PYFFAYFPTASSYPAMLADMLCGAIGC---IGFS-WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSAS 149 (476)
T ss_dssp TTBCSSSCCCCCHHHHHHHHHHHHHCC---CCSS-GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHH
T ss_pred CCeeEeCCCCCCHHHHHHHHHHHhhcc---cccc-hhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHH
Confidence 345555545555566666665544332 2222 222222222366788999999998642 11368999999
Q ss_pred hhHHHHHhhhcc---------CC--------Cc--EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcchhhhhhhhhh
Q psy16512 135 SAIKTVSEYFEF---------NE--------GS--FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNMLNEFKESQEN 194 (815)
Q Consensus 135 ~al~~~~~al~~---------~~--------gd--vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~ 194 (815)
+|+..++.+... .. .. ++++...|.|+.....+++-.. .++++.++.++++.++++|++.
T Consensus 150 ~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~ 229 (476)
T d1js3a_ 150 EATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERD 229 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHH
Confidence 999888766531 11 12 5677788999877666654322 7788888899999998877522
Q ss_pred hhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC------CCCcEE
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ------HQPDFI 268 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~------~~~D~v 268 (815)
.+ ....+.+|+.++.++.+|.+.|+++|+++|+ ++++|+|||||++......+-.. ..+|.+
T Consensus 230 ~~-~g~~p~~VvataGtt~~G~iDpl~~I~~i~~-----------~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSi 297 (476)
T d1js3a_ 230 KA-AGLIPFFVVATLGTTSCCSFDNLLEVGPICH-----------EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297 (476)
T ss_dssp HH-TTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH-----------HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEE
T ss_pred Hh-cCCCcEEEeecCCCccceeeccHHHHHHHHH-----------hcCcEEEEecccchhhhhhcchhhhhcCCccccee
Confidence 21 1234688999999999999999999999999 89999999999876554332211 148999
Q ss_pred EEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhh
Q psy16512 269 SISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKK 348 (815)
Q Consensus 269 v~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~ 348 (815)
+.++|||++.|.++|++++++...- ......+..+........... .+....-..++..+.+ +.+..++..+...
T Consensus 298 t~d~HK~l~~P~~~g~~l~r~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sr~~~a-l~lw~~l~~~G~~ 372 (476)
T d1js3a_ 298 NFNPHKWLLVNFDCSAMWVKRRTDL-TGAFKLDPVYLKHSHQGSGLI---TDYRHWQLPLGRRFRS-LKMWFVFRMYGVK 372 (476)
T ss_dssp EECHHHHSSCCSSCEEEEESCHHHH-HGGGC------------CCSC---CCGGGSSSCSCCCCTH-HHHHHHHHHHHHH
T ss_pred eecCccccccCCcceeecccchHHH-HHHHhcChhhhcccccccccc---ccccccccccchhhHH-HHHHHHHHHHhHh
Confidence 9999999998999999999874321 001111111100000000000 0000111122333333 3455666666554
Q ss_pred hhhH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEecc
Q psy16512 349 RKSF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRT 426 (815)
Q Consensus 349 ~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~ 426 (815)
+... ++..++++++.+.|++. |+++++.+.. .++++|++...+. ++ ..+.+.+.+.|-.
T Consensus 373 g~~~~i~~~~~lA~~l~~~l~~~------~~fel~~~p~-------l~iV~Fr~~~~d~--~n-~~l~~~l~~~G~~--- 433 (476)
T d1js3a_ 373 GLQAYIRKHVQLSHEFEAFVLQD------PRFEVCAEVT-------LGLVCFRLKGSDG--LN-EALLERINSARKI--- 433 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------TTEEECSCCC-------SSEEEEEESSCHH--HH-HHHHHHHHHHTSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCeEEECCCc-------eEEEEEEccCChH--HH-HHHHHHHHhcCCE---
Confidence 4322 88899999999999998 8999997754 6899999865321 11 1344455444421
Q ss_pred CccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc-CCCCHHHHHHHHHHHHHHHh
Q psy16512 427 GCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG-HASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 427 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g-~~~t~edi~~lv~~L~~~~~ 496 (815)
++++... +| ..++|++++ +.++++||+.+++.|+++..
T Consensus 434 --~~s~t~~----------------------------~g--~~~lR~~i~n~~Tt~~did~~~~~i~~~a~ 472 (476)
T d1js3a_ 434 --HLVPCRL----------------------------RG--QFVLRFAICSRKVESGHVRLAWEHIRGLAA 472 (476)
T ss_dssp --BCEEEEE----------------------------TT--EEEEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred --EEeeeeE----------------------------CC--EEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 1111111 12 258999987 66899999999999998754
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.83 E-value=1.4e-19 Score=194.20 Aligned_cols=311 Identities=13% Similarity=0.072 Sum_probs=214.2
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
...++++++.+.|... .++++++.+|+..++.++. ++|| +|++..-|..... ....+.+.| ...++..
T Consensus 65 ~~~LE~~la~LEgg~~----a~~~sSGmaAi~~~l~~ll-~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~~--- 136 (397)
T d1y4ia1 65 TDALEKKLAVLERGEA----GLATASGISAITTTLLTLC-QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAG--- 136 (397)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCcc----ceeehHHHHHHHHHHhhcc-CCCCeeeeecccccccchhhhcccCCCceEeeccCCC---
Confidence 7889999999999854 4566777789999999998 9999 8888877766655 444566677 3334432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ ++.++|++|++..|.||+..+.|++.|+++++ ++|++++||.+.+.+...-++ .
T Consensus 137 d~~~~~~-------~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~-----------~~gi~~vvDnT~atP~~~~Pl-~ 197 (397)
T d1y4ia1 137 KPEEIRA-------AMRPETKVVYIETPANPTLSLVDIETVAGIAH-----------QQGALLVVDNTFMSPYCQQPL-Q 197 (397)
T ss_dssp SHHHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHH-------hcCCCCcEEEecCCcccceeecccHHHHHHhh-----------cCCceEEecCcccCcccCcch-h
Confidence 3344444 44588999999999999999999999999999 899999999998877654333 5
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|..|+++|... .|+++.+++.+.+++-.. .+....+.++....+.+..
T Consensus 198 ~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~----------------------~~~~~G~~l~p~~a~l~~r 255 (397)
T d1y4ia1 198 LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVG----------------------LKDITGGCMSPFNAWLTLR 255 (397)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTH----------------------HHHTTCCCCCHHHHHHHHH
T ss_pred cCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHH----------------------HHhCcCCcCCHHHHHHHHc
Confidence 6899999999999995544 577777776654321000 0123345666666666666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+. .++++..+.+..+.+.|++. |.+ +++-|...+. ....+++++|.+.+.... .
T Consensus 256 gl~TL~---lRm~~~~~nA~~lA~~L~~h------p~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~---~ 323 (397)
T d1y4ia1 256 GVKTLG---IRMERHCENALKIARFLEGH------PSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEA---G 323 (397)
T ss_dssp HHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHH---H
T ss_pred CcCcHH---HHHHHHHHHHHHHHHHHHhC------CCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHH---H
Confidence 665543 34588888888899999887 566 3444432111 123589999988642111 1
Q ss_pred HHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+...|+-..+.++.|..-+ ++....+..+++++.... |.+++.||+|+|.++.++-++.|
T Consensus 324 ~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~---------------Gi~~~liRlsvGlEd~~DLi~Dl 388 (397)
T d1y4ia1 324 RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKA---------------GITDGLIRLSVGLEDPEDIINDL 388 (397)
T ss_dssp HHHHHTCSSSEECSCCSCSSCEEECTTTTTTSSSCHHHHHHT---------------TCCTTEEEEECCSSCHHHHHHHH
T ss_pred HHHHHcCCccceeeccCcccceeeCccccccccCCHHHHHHc---------------CCCcCEEEEEeccCCHHHHHHHH
Confidence 235555666666666664322 344444556666654433 56679999999988777767777
Q ss_pred HHHHHH
Q psy16512 488 LSFLNQ 493 (815)
Q Consensus 488 v~~L~~ 493 (815)
-++|++
T Consensus 389 ~~AL~~ 394 (397)
T d1y4ia1 389 EHAIRK 394 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.82 E-value=2e-19 Score=199.05 Aligned_cols=310 Identities=11% Similarity=0.057 Sum_probs=195.6
Q ss_pred HHHHHHHHHhHc----CCC--C-CceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----NTD--S-DHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g~~--~-~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|+.||+++ |.+ + ++ |++|+|+++|+.++++++. ++|| +++..+.|+.+......++... .++++
T Consensus 68 ~~~lReaiA~~~~~~~g~~~~p~~~--I~it~G~~~al~~~~~~l~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~ 144 (418)
T d2r5ea1 68 HPRLVQALSKLYSQLVDRTINPMTE--VLVTVGAYEALYATIQGHV-DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLK 144 (418)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTS--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECE
T ss_pred CHHHHHHHHHHHHHHhCCCCCccce--EEEcCCCchhhhhhhhhcc-ccccceeccccccchhhHHHHHcCCeEEEEEec
Confidence 556677666654 543 3 45 9999999999999999998 9999 8898988988877776665444 55655
Q ss_pred chhhh-cc--hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 178 VDDAR-NM--LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 178 ~~~~~-~~--~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
+++.. .. ........++.....+++++++++++|||||.+++.+++.++++ .|+++++++|.|+++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~--------~a~~~~~~iI~De~y~~~ 216 (418)
T d2r5ea1 145 PNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVAN--------LCKKWNVLCVSDEVYEHM 216 (418)
T ss_dssp ESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEECTTTTC
T ss_pred ccccccchhhhhhhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhh--------hhhcCCeeeecccchhhh
Confidence 43211 00 00000011122344577999999999999999999888666554 344899999999987543
Q ss_pred CC----CC---CCCC-CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccc
Q psy16512 255 SN----ML---DLKQ-HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEK 324 (815)
Q Consensus 255 ~~----~~---dl~~-~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (815)
.. .. .+.. ...-+++.|++|.++.| | +||++.++++++.+.... .
T Consensus 217 ~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~p-GlRiG~~~~~~~~i~~~~~~~------------------------~ 271 (418)
T d2r5ea1 217 VFEPFEHIRICTLPGMWERTITIGSAGKTFSLT-GWKIGWAYGPEALLKNLQMVH------------------------Q 271 (418)
T ss_dssp BCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG-GGCCEEEESCHHHHHHHHHHH------------------------T
T ss_pred ccCCCccccccccccccceeeeeecCCccccCC-Ccccccccccchhhhhhhhcc------------------------c
Confidence 21 11 1111 12347788999999844 7 899999888776553221 1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHhh---h----hhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 325 FEDGTVNYLAIISLKYGFDTMEKK---R----KSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 325 ~~~gt~~~~~~~al~~al~~l~~~---~----~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
......+.....++...+...... . ..+ ++.+..++++.+.|+++ ++++..|.+ +.++
T Consensus 272 ~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-------g~~~~~P~g-------g~f~ 337 (418)
T d2r5ea1 272 NCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-------GMNPTVPQG-------GYFM 337 (418)
T ss_dssp TTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-------TCEEEECSB-------SSEE
T ss_pred ccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-------CCcccCCCc-------eeEE
Confidence 111122333333333333221110 0 111 66677888888999887 677776654 6677
Q ss_pred EEEEecCCC--------CccCHHHHH-HhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCC
Q psy16512 397 NFNLLHKDG--------TYYGYSEVQ-NLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKP 467 (815)
Q Consensus 397 ~f~~~~~~~--------~~~~~~~v~-~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~ 467 (815)
++.+..... ...+..++. ++++++||.+.+|+.|....... ..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~~~----------------------------~g 389 (418)
T d2r5ea1 338 VADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKH----------------------------LG 389 (418)
T ss_dssp EEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGGHH----------------------------HH
T ss_pred EEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCCcc----------------------------CC
Confidence 777653210 011122333 45577899999997664322110 01
Q ss_pred ceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 468 TGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 468 ~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
.+++|||+. .++|++++.++.|++++.
T Consensus 390 ~~~iRis~~--~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 390 EDFVRYCFF--KKDENLQKAAEILRKWKG 416 (418)
T ss_dssp TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEec--CCHHHHHHHHHHHHHHHc
Confidence 379999996 478999999999999764
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.7e-19 Score=199.74 Aligned_cols=308 Identities=13% Similarity=0.121 Sum_probs=189.9
Q ss_pred HHHHHHHHHhHc----C---CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcC
Q psy16512 107 IDQMRTKILQYF----N---TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFS 177 (815)
Q Consensus 107 ~~~~r~~la~~~----g---~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~ 177 (815)
..++|++|++++ | +++++ |++|+|+++|+.+++.++. .+|| |++..+.|+.+....+.++... .++.+
T Consensus 82 ~~~LR~aia~~~~~~~g~~~~~~~~--I~it~G~~~al~~~~~~~~-~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~ 158 (420)
T d1vp4a_ 82 DPVLKQQILKLLERMYGITGLDEDN--LIFTVGSQQALDLIGKLFL-DDESYCVLDDPAYLGAINAFRQYLANFVVVPLE 158 (420)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGG--EEEEEHHHHHHHHHHHHHC-CTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHH--eEeccchhhhHHHHHHhhh-ccccccccccccccchhHHHHHHhhhccccccc
Confidence 566777777764 3 45666 9999999999999999998 8999 8888888877655554443222 45554
Q ss_pred chhhhcchhhhhhhhhh--hhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC
Q psy16512 178 VDDARNMLNEFKESQEN--VENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS 255 (815)
Q Consensus 178 ~~~~~~~~~~~~~l~~~--~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~ 255 (815)
++ ..+++.+...+... .......+.++++++++||||..++.+++.++++ .|+++++++|+|+++..-.
T Consensus 159 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~--------~a~~~~i~ii~De~y~~l~ 229 (420)
T d1vp4a_ 159 DD-GMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVE--------IAEKYDLFIVEDDPYGALR 229 (420)
T ss_dssp TT-EECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEECSSTTCB
T ss_pred cc-ccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhh--------hhhcccccccccchhhhcc
Confidence 43 23444333222111 1112234668888999999999999877655554 3449999999999865321
Q ss_pred C--C--CC---CCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCcccccc
Q psy16512 256 N--M--LD---LKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFE 326 (815)
Q Consensus 256 ~--~--~d---l~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (815)
. + .. ....+.-+++.|++|+++ | | +||++.++++++.+..... .+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~i~~~s~sk~~~-~-G~RiG~~~~~~~~i~~l~~~~~-----------------------~~~ 284 (420)
T d1vp4a_ 230 YEGETVDPIFKIGGPERVVLLNTFSKVLA-P-GLRIGMVAGSKEFIRKIVQAKQ-----------------------SAD 284 (420)
T ss_dssp CSSCCCCCHHHHHCTTTEEEEEESTTTTC-G-GGCEEEEECCHHHHHHHHHHHH-----------------------HHH
T ss_pred ccCcccccccccccccceeEEeccccccc-c-ccccccccccchhhhhhhhhhh-----------------------hcc
Confidence 1 0 00 011233466778888876 5 6 8999999888765532210 011
Q ss_pred CCCCChhHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecC
Q psy16512 327 DGTVNYLAIISLKYGFDT---MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHK 403 (815)
Q Consensus 327 ~gt~~~~~~~al~~al~~---l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~ 403 (815)
. ..+.....++...++. ........+..++.++.+.+.|.+. .+..|++++..|.+ +.++++.+++.
T Consensus 285 ~-~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~g~~~~~p~g-------g~f~~~~~~~~ 354 (420)
T d1vp4a_ 285 L-CSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY--FSDIPGVKWVKSEG-------GLFIWLTLPEG 354 (420)
T ss_dssp S-SCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH--STTSTTCEECCCSB-------SSEEEEECCTT
T ss_pred c-cCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhh--hccCCCcEEecCCc-------eEEEEEECCCC
Confidence 1 2223333333233221 1111111244455555555555543 11226788886654 67888888643
Q ss_pred -CCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 404 -DGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 404 -~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
+... +.+.|.++||.+.+|+.|... +...+++|||++. .+++
T Consensus 355 ~d~~~-----~~~~l~~~gV~v~PG~~F~~~-------------------------------~~~~~~iRls~~~-~~~e 397 (420)
T d1vp4a_ 355 FDTWE-----MFEYAKRKKVFYVPGRVFKVY-------------------------------DEPSPSMRLSFCL-PPDE 397 (420)
T ss_dssp CCTTT-----THHHHHHHTEECEEGGGGCTT-------------------------------CCCCSEEEEECSS-SCHH
T ss_pred CCHHH-----HHHHHHHCCeEEEechhhCCC-------------------------------CCCCCEEEEEeCc-CCHH
Confidence 3333 677889999999998765431 1224799999974 4678
Q ss_pred HHHHHHHHHHHHHhhc
Q psy16512 483 DVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 483 di~~lv~~L~~~~~~~ 498 (815)
++++.++.|++++++-
T Consensus 398 ~l~~a~~rL~~~l~~~ 413 (420)
T d1vp4a_ 398 KIVEGIKRLREVVLEY 413 (420)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8988888888877654
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=1.6e-19 Score=197.93 Aligned_cols=298 Identities=13% Similarity=0.068 Sum_probs=188.2
Q ss_pred HHHHHHHHHhHc----C--CCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCc
Q psy16512 107 IDQMRTKILQYF----N--TDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~----g--~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~ 178 (815)
..++|+.+++++ | +++++ |++|+|+++++..++.++. .+|+ |++..+.|+.+.......+... .++.+.
T Consensus 66 ~~~LR~aia~~~~~~~g~~~~~~~--I~it~G~~~~l~~~~~~l~-~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~ 142 (389)
T d2gb3a1 66 IWELREAFASYYKRRQRVDVKPEN--VLVTNGGSEAILFSFAVIA-NPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRM 142 (389)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCGGG--EEEESHHHHHHHHHHHHHC-CTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHhcCCCcccce--EEecccccccccccccccc-cCCCeEEEeCCCCccccccccccCcccccccccc
Confidence 567777777765 4 45666 9999999999999999998 8998 8888888877766655554333 556655
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM- 257 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~- 257 (815)
++....+... .....++++++++++|+||||..++.+++.++++ .|+++++++|.|+++..-...
T Consensus 143 ~~~~~~~~~~------~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~--------~a~~~~~~iI~De~y~~~~~~~ 208 (389)
T d2gb3a1 143 EEGFAIPQNL------ESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVE--------IAERHGLFLIVDEVYSEIVFRG 208 (389)
T ss_dssp GGTSCCCTTG------GGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEECTTTTCBCSS
T ss_pred ccccchhhhh------hhhcccCccEEEeCCCCccccccchHHHHHHHHh--------hcccCCEEEEEecccccccccc
Confidence 4433322211 2234577999999999999999999777666555 344899999999886532111
Q ss_pred --CC-C-CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 258 --LD-L-KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 258 --~d-l-~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
.. . ...+..+++.|++|.++.| | +||++.+++.+....... .......+
T Consensus 209 ~~~~~~~~~~~~~~v~~s~sK~~~~~-GlRiG~~~~~~~~i~~~~~~~------------------------~~~~~~~~ 263 (389)
T d2gb3a1 209 EFASALSIESDKVVVIDSVSKKFSAC-GARVGCLITRNEELISHAMKL------------------------AQGRLAPP 263 (389)
T ss_dssp CCCCGGGSCCTTEEEEEESTTTTTCG-GGCCEEEECSCHHHHHHHHHH------------------------HHHSCCCC
T ss_pred ccccccccccccccccccccccccCc-ccceeeeeccchhHHHHHhhh------------------------hhcccccc
Confidence 10 1 1123457888999998844 7 799998776442211110 01122334
Q ss_pred hhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCH
Q psy16512 332 YLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
.....++...+......-..+ ++.++.++.+.+.|+++ +......|.+ +.+++++++..+..
T Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~------~~~~~~~p~~-------g~~~~~~lp~~~~~---- 326 (389)
T d2gb3a1 264 LLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH------GLKRFTKPSG-------AFYITAELPVEDAE---- 326 (389)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT------TCCCBCCCSB-------SSEEEEECSSSCHH----
T ss_pred ccccccccccccccchhcccccccccccchhhhhhhhhh------ccccccCCCc-------eEEEEEeCCCCCHH----
Confidence 444444444433222221222 77788888999999987 3333343332 67888887654433
Q ss_pred HHHHHh-hhc-----CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 411 SEVQNL-ANL-----KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 411 ~~v~~~-l~~-----~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
++.+. |.+ +||.+.+|+.|... .+...+++|||+. .+++++
T Consensus 327 -~~~~~ll~e~~l~~~~v~v~pg~~f~~~------------------------------~~~~~~~iRis~~--~~~~~l 373 (389)
T d2gb3a1 327 -EFARWMLTDFNMDGETTMVAPLRGFYLT------------------------------PGLGKKEIRIACV--LEKDLL 373 (389)
T ss_dssp -HHHHHHHHSCCBTTEEEECEEGGGGCSS------------------------------TTTTSSEEEEECC--SCHHHH
T ss_pred -HHHHHHHHhhhhhhCCEEEEeCcccccC------------------------------CCCCCCEEEEEEc--CCHHHH
Confidence 24433 333 46777776543211 1222489999986 477888
Q ss_pred HHHHHHHHHHHh
Q psy16512 485 KYFLSFLNQYFL 496 (815)
Q Consensus 485 ~~lv~~L~~~~~ 496 (815)
++.++.|.+.++
T Consensus 374 ~~a~~~L~~~lk 385 (389)
T d2gb3a1 374 SRAIDVLMEGLK 385 (389)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887777777654
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.82 E-value=4.4e-19 Score=190.61 Aligned_cols=312 Identities=14% Similarity=0.055 Sum_probs=207.8
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~ 180 (815)
.....++++|+++.|... .+.++++..|+..++.++. ++|| +|.+..-|..... ......+.| ...++..+
T Consensus 67 Pt~~~LE~~la~LEgg~~----a~~~sSGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~ 141 (398)
T d1qgna_ 67 PTTVVLEEKISALEGAES----TLLMASGMCASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPAD 141 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHHS-CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSC
T ss_pred hHHHHHHHHHHHHhCCce----EEEecCcchHHHHHHhhcc-cccccccccccccchhhhhhcccccccccccccccccc
Confidence 348889999999999754 5666777789999999998 9999 8888777765554 444555566 22333221
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
. +...+ ....++|++|++..+.||+..+.|++.|+++|+ ++|++++||.+.+.+...-++
T Consensus 142 ~---~~~~~------~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~-----------~~g~~~vVDnT~atP~~~~Pl 201 (398)
T d1qgna_ 142 V---GALEL------ALNQKKVNLFFTESPTNPFLRCVDIELVSKLCH-----------EKGALVCIDGTFATPLNQKAL 201 (398)
T ss_dssp H---HHHHH------HHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCTT
T ss_pred h---hhhhh------hhccccceEEEccCccccccccchHHHHHHHHh-----------hcCCEEEecceeeccccCCch
Confidence 1 11111 122478999999999999999999999999999 899999999998877643333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
.+++|+++.|.+|+++|... .|.+..+++.++.++.. .+...++++....+.+
T Consensus 202 -~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~------------------------~~~~G~~l~p~~a~ll 256 (398)
T d1qgna_ 202 -ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL------------------------HHILGGALNPNAAYLI 256 (398)
T ss_dssp -TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH------------------------HHHHCCCCCHHHHHHH
T ss_pred -hhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhh------------------------cccCCCcCCHHHHHHH
Confidence 56899999999999996644 46665555555443211 1233446666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++.+. .++++..+.+..+.+.|++. |.++ ++-|.-.+. ....+++++|.+.+... .
T Consensus 257 ~rgl~TL~---lRm~~~~~nA~~lA~~L~~h------p~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~-~- 325 (398)
T d1qgna_ 257 IRGMKTLH---LRVQQQNSTALRMAEILEAH------PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLL-T- 325 (398)
T ss_dssp HHHGGGHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHH-H-
T ss_pred HhcchHHH---HHHHHHHHHHHHHHHHHHhC------CCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHH-H-
Confidence 66655443 34578888888888888887 5664 444432111 12348899998764211 1
Q ss_pred CHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.+.|+-..+.++.|...+ ++....+..+++++.... |.+++.||+|+|.++.++-++
T Consensus 326 -a~~f~~~L~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~~~---------------Gi~~~liRlSvGlEd~eDLi~ 389 (398)
T d1qgna_ 326 -TAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKY---------------GIMDNLVRFSFGVEDFDDLKA 389 (398)
T ss_dssp -HHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTT---------------TCCSSEEEEECCSSCHHHHHH
T ss_pred -HHHHHHcCCcceeeeCCCCCcceeeCcchhccccCCHHHHHhc---------------CCCcCEEEEEeccCCHHHHHH
Confidence 1235555555555566564333 444445566666554322 566799999999877666667
Q ss_pred HHHHHHHH
Q psy16512 486 YFLSFLNQ 493 (815)
Q Consensus 486 ~lv~~L~~ 493 (815)
.|-++|++
T Consensus 390 Dl~~AL~~ 397 (398)
T d1qgna_ 390 DILQALDS 397 (398)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77676654
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=9.2e-19 Score=187.46 Aligned_cols=310 Identities=16% Similarity=0.101 Sum_probs=206.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.++++|+++.|.+. .+.++++..|+..++.++. ++|| +|++...|..... ....+.+.| ...++..
T Consensus 52 ~~~le~~la~LEgg~~----a~~~sSGMaAi~~~l~~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~~--- 123 (384)
T d1cs1a_ 52 RDVVQRALAELEGGAG----AVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG--- 123 (384)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCCc----eEEecChHHHHHHHHhhcc-cccceecccccccchhhhhhhhhhcccccccccccCC---
Confidence 8889999999999754 5666777779999999998 9999 7777777755444 444455555 3333332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.++.+ +.++|++|++..+.||+..+.|++.|+++++ ++|++++||.+.+.+...-++ .
T Consensus 124 d~~~~~~~-------~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~-----------~~g~~~vVDNT~atP~~~~Pl-~ 184 (384)
T d1cs1a_ 124 DEQALRAA-------LAEKPKLVLVESPSNPLLRVVDIAKICHLAR-----------EVGAVSVVDNTFLSPALQNPL-A 184 (384)
T ss_dssp CHHHHHHH-------HHTCCSEEEEECSCTTTCCCCCHHHHHHHHH-----------HTTCEEEEECTTTCTTTCCGG-G
T ss_pred CHHHHHhh-------ccccccEEEEeccccccceeccHHHHhhhhh-----------hcCcEEEEeccccCccccccc-c
Confidence 23333332 3478999999999999999999999999999 899999999998877643333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|.+|+++|... .|+++.+++.. +.+... .+...++++....+.+.
T Consensus 185 ~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~------------------------~~~~G~~~~p~~a~ll~ 240 (384)
T d1cs1a_ 185 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWW------------------------ANNIGVTGGAFDSYLLL 240 (384)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHH------------------------HHHHTCBCCHHHHHHHH
T ss_pred cCCCEEEEccccccccCCCcccccccCCchhhhhhhhhh------------------------hhhhhhccccccHHHHh
Confidence 6899999999999995543 46666655432 222111 11223345555555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+ ..++++..+.+..+.+.|++. |.++ ++-|.-.+. ....+++++|.+.+... .
T Consensus 241 rgL~TL---~lRm~~~~~nA~~lA~~L~~h------p~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~-~-- 308 (384)
T d1cs1a_ 241 RGLRTL---VPRMELAQRNAQAIVKYLQTQ------PLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQ-T-- 308 (384)
T ss_dssp HHHTTH---HHHHHHHHHHHHHHHHHHTTC------TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHH-H--
T ss_pred hccchh---HHHHHHHHHHHHHHHHhcccC------CceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHH-H--
Confidence 555543 335588888888899999877 5553 443332111 12348899998864221 1
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|+-..+.++.|..-+ ++....+..++++..... |..++.||+|+|.++.++-++.
T Consensus 309 a~~f~~~L~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~~---------------Gi~~~lvRlSvGlEd~eDLi~D 373 (384)
T d1cs1a_ 309 LRRFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAA---------------GISETLLRISTGIEDGEDLIAD 373 (384)
T ss_dssp HHHHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHH---------------TCCTTEEEEECCSSCHHHHHHH
T ss_pred HHHHHHhCCcceeccccCCccceeccccccccccCCHHHHHhc---------------CCCcCeEEEEeccCCHHHHHHH
Confidence 1235555555555666664322 344445666666654433 5667999999999877777777
Q ss_pred HHHHHHHH
Q psy16512 487 FLSFLNQY 494 (815)
Q Consensus 487 lv~~L~~~ 494 (815)
|-++|++.
T Consensus 374 l~~AL~aa 381 (384)
T d1cs1a_ 374 LENGFRAA 381 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777653
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.79 E-value=6.4e-19 Score=195.92 Aligned_cols=305 Identities=9% Similarity=-0.002 Sum_probs=196.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc-CCCc-EEEecCCCcchhhHHHHhhccc-eE---EcCchh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-NEGS-FIYLTDNHTSVLGMRELVKTNQ-IY---SFSVDD 180 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v---~~~~~~ 180 (815)
..+....+++++|.+... .....|+++++.+++.+... .+++ +|++...|+|+......++... .+ +.+..+
T Consensus 115 ~~~~~~~~~~~~g~~~~~--~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~ 192 (434)
T d2z67a1 115 TNKILESFFKQLGLNVHA--IATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRV 192 (434)
T ss_dssp HHHHHHHHHHHTTCCCEE--EEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEE
T ss_pred HHHHHHHHHHhcCCCcce--eecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCcc
Confidence 345556788899987643 34445555566666666542 3566 8899999999987776655444 33 234445
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCC----
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---- 256 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---- 256 (815)
.+|+++++++|++. ....++.+|+++++++++|.+.|+++|+++|+ ++|+++++|++++.+..
T Consensus 193 ~~d~~~l~~~i~~~--~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~-----------~~~~~l~vD~a~g~~~~~~~~ 259 (434)
T d2z67a1 193 YVPVEDIENAIKKE--IELGNRPCVLSTLTFFPPRNSDDIVEIAKICE-----------NYDIPHIINGAYAIQNNYYLE 259 (434)
T ss_dssp ECCHHHHHHHHHHH--HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHHHH
T ss_pred CCCHHHHHHHHHhh--hhcCCceEEEeccCcCCCccccCHHHHHHHHH-----------HhCCeEEEeccchhhhhhccc
Confidence 67888888766421 12346889999999999999999999999999 89999999999976531
Q ss_pred -CCCCCCCCCcEEEEccccccccCCcceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhH
Q psy16512 257 -MLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLA 334 (815)
Q Consensus 257 -~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~ 334 (815)
+......++|++++|+||++++|.|.|+++.+++. ++++.+.+ .++.+...
T Consensus 260 ~~~~~~~~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 312 (434)
T d2z67a1 260 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSY---------------------------PGRASATP 312 (434)
T ss_dssp HHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTS---------------------------CSCBCSHH
T ss_pred cccccccCCcceEEEcCccccccCCCccccccCcHHHHHHHHhhc---------------------------ccccccch
Confidence 11223458999999999998889999999887653 23332211 22223333
Q ss_pred HHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHH
Q psy16512 335 IISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 335 ~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
...+.+++..+...+.. . ++..++++++.+.|+++... .+.+++.... ...+.+.+ .. +...
T Consensus 313 ~~~~~a~l~~~~~~g~~~~~~~~~~~a~~l~~~L~~l~~~---~g~~ll~~~~-------~~~~~~~~-~~-----~~~~ 376 (434)
T d2z67a1 313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKK---TGGKFLDVES-------PIASCISV-NS-----DPVE 376 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCCBCCCCC-------SSEEEEEC-SS-----CHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhhhh---cCceecCCCC-------Cceeeeec-CC-----CHHH
Confidence 44444555554443322 2 77888889998888776211 1334443321 22333332 22 2345
Q ss_pred HHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLN 492 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~ 492 (815)
+...|.+.||...............+. +..+.+++|++++.++|+||||+++++|+
T Consensus 377 l~~~L~~~gI~g~~v~~~l~~~g~~~~------------------------~~~~~~~l~~~~s~~~T~edID~~i~~L~ 432 (434)
T d2z67a1 377 IAAKLYNLRVTGPRGIKKTDHFGNCYL------------------------GTYTHDYIVMNAAIGVRTEDIVNSVSKLE 432 (434)
T ss_dssp HHHHHHHTTEESCEEECTTCHHHHTCS------------------------SCCSCCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeeehhhhccccCeeee------------------------cccCCCeEEEecCCCCCHHHHHHHHHHHh
Confidence 778889999865432211111111111 11235889999999999999999999998
Q ss_pred H
Q psy16512 493 Q 493 (815)
Q Consensus 493 ~ 493 (815)
+
T Consensus 433 k 433 (434)
T d2z67a1 433 K 433 (434)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.79 E-value=4.2e-18 Score=183.37 Aligned_cols=316 Identities=13% Similarity=0.081 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~ 180 (815)
...+.++++|+++.|+.. .+.++++.+|+..++.++. ++|| +|.+..-|..... ....+.+.| ...++..
T Consensus 59 PT~~~le~~la~LEg~~~----a~~~sSGmaAi~~~~l~l~-~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~- 132 (394)
T d1e5ea_ 59 PTVSNLEGKIAFLEKTEA----CVATSSGMGAIAATVLTIL-KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA- 132 (394)
T ss_dssp HHHHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHHHHHhCCcc----eeeeccchHHHHHHHHhhc-ccccccccccceeehhhHhHHHHhhccceeeeccCCC-
Confidence 338889999999999754 4555677789999999998 9999 7777776765544 444566666 3333432
Q ss_pred hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCC
Q psy16512 181 ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDL 260 (815)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl 260 (815)
+.+.+++ +++++|++|++..+.||+..+.|++.+.++++ +++|++++||.+.+.+...-++
T Consensus 133 --d~~~~~~-------~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~----------~~~g~~vvvDnT~atP~~~~Pl 193 (394)
T d1e5ea_ 133 --IPGEVKK-------HMKPNTKIVYFETPANPTLKIIDMERVCKDAH----------SQEGVLVIADNTFCSPMITNPV 193 (394)
T ss_dssp --STTHHHH-------HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH----------TSTTCEEEEECTTTCTTTCCGG
T ss_pred --CHHHHHH-------hhcccccEEEEeccCCcceeeehhhhhhhccc----------cccCeEEEecCcccCcccCCch
Confidence 2333443 34588999999999999999999999888665 1678999999998877643333
Q ss_pred CCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 261 KQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 261 ~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
++++|+++.|.+|+++|... .|+++++++.....+... .++...++++....+.+
T Consensus 194 -~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~----------------------~~~~~G~~lsp~~a~ll 250 (394)
T d1e5ea_ 194 -DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG----------------------IKDITGSVISPHDAWLI 250 (394)
T ss_dssp -GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC----------------------CCCCCCCCCCHHHHHHH
T ss_pred -hcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHH----------------------HHHhhCCCCChHHHHHH
Confidence 56899999999999996543 577777766553321110 01233456666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC---------CCcccceEEEEEecCCCCcc
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE---------SKYQGNIVNFNLLHKDGTYY 408 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~ 408 (815)
..+++.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+. ....|++++|.+.+....
T Consensus 251 ~rgl~TL~---lRm~r~~~nA~~lA~~L~~h------p~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~-- 319 (394)
T d1e5ea_ 251 TRGLSTLN---IRMKAESENAMKVAEYLKSH------PAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG-- 319 (394)
T ss_dssp HHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH--
T ss_pred HhhchhHH---HHHHHHHHHHHHHHHHHhhc------CCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHH--
Confidence 66666544 34588888888899999887 666 3444432111 123488999987642111
Q ss_pred CHHHHHHhhhcCCcEeccCcc---CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCH---CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVK 485 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~ 485 (815)
...+.+.|+-..+.++.|.. ..++....+..+++++.... |.+++.||+|+|.++.++-++
T Consensus 320 -a~~f~~~l~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~~---------------Gi~~~liRlSVGlEd~eDLi~ 383 (394)
T d1e5ea_ 320 -AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAA---------------GITDGMIRLSVGIEDADELIA 383 (394)
T ss_dssp -HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHT---------------TCCTTEEEEECCSSCHHHHHH
T ss_pred -HHHHHHhCCccceeeccCCccceeECccccccccCCHHHHHhc---------------CCCcCEEEEEeccCCHHHHHH
Confidence 12345555545555555532 22344444555665554333 566789999999988888888
Q ss_pred HHHHHHHHHH
Q psy16512 486 YFLSFLNQYF 495 (815)
Q Consensus 486 ~lv~~L~~~~ 495 (815)
.|-++|++++
T Consensus 384 Dl~qAl~~l~ 393 (394)
T d1e5ea_ 384 DFKQGLDALL 393 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 8888888765
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=1.7e-18 Score=193.13 Aligned_cols=325 Identities=11% Similarity=0.011 Sum_probs=199.4
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHH-HHHhhhc--cCCCc-EEEecCCCcchhhHHHHhhccc-eE---EcCc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIK-TVSEYFE--FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IY---SFSV 178 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~-~~~~al~--~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v---~~~~ 178 (815)
..++.+++++++|.+... ..++|+++|++.. +++.++. ..+++ ||++..+|+|+.....+++... .+ +.+.
T Consensus 96 e~~~~~~~~~l~g~~~~~-~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~~~~ 174 (445)
T d3bc8a1 96 TNSLVLNVIKLAGVHSVA-SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGD 174 (445)
T ss_dssp HHHHHHHHHHHHTCTTCC-EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHhCCCccc-CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeeccCc
Confidence 445778889999987643 4678888876544 4444432 13455 8899999999988777765544 33 3345
Q ss_pred hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-
Q psy16512 179 DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM- 257 (815)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~- 257 (815)
++.+|+++++++|+ +...+++.+|++++++|++|.+.|+++|+++|+ ++|+++|+|+|++.+...
T Consensus 175 ~~~id~~~l~~~i~---~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~-----------~~~~~l~vD~a~~~~~~~~ 240 (445)
T d3bc8a1 175 ELRTDLKAVEAKIQ---ELGPEHILCLHSTTACFAPRVPDRLEELAVICA-----------NYDIPHVVNNAYGLQSSKC 240 (445)
T ss_dssp EEECCHHHHHHHHH---HHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHH-----------HHTCCEEEECTTTTTCHHH
T ss_pred ccccCHHHHHHHHH---hccccCeEEEEEeCCCCCCeeehhHHHHHHHHH-----------HhCCcEEEEccchhhhhhc
Confidence 56788888887664 233456899999999999999999999999999 899999999999876421
Q ss_pred -----CCCCCCCCcEEEEccccccccCCcceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 258 -----LDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 258 -----~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
.+....++|++++|+||++++|.|.|++++++... +.+...+.+ +.+
T Consensus 241 ~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~---------------------------~~~ 293 (445)
T d3bc8a1 241 MHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPG---------------------------RAS 293 (445)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCS---------------------------CBC
T ss_pred cccchhccCcCCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhh---------------------------ccc
Confidence 11222358999999999988899999999876443 222221111 111
Q ss_pred hhHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC-Ccc
Q psy16512 332 YLAIISLKYGFDTMEKKRKS--FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-TYY 408 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~--~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-~~~ 408 (815)
....+.+..++..+...+.. .++...+++++.+.|.++.... +..+.... .......+.+..... ...
T Consensus 294 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~---~~~~l~~~------~~~~~~~~~l~~~~~~~~~ 364 (445)
T d3bc8a1 294 ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAH---NERLLQTP------HNPISLAMTLKTIDGHHDK 364 (445)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCBCCCT------TCSSEEEEECTTTSSSSSC
T ss_pred CcchHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHhhc---CceeecCC------CCCcceEEEeeeccccCCC
Confidence 12222333344433332221 2666777778887776651100 22333221 123333444432221 123
Q ss_pred CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHH
Q psy16512 409 GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFL 488 (815)
Q Consensus 409 ~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv 488 (815)
+..++...|...||.....+.+... ....+.. ..+.| ...+.....++|++++.++|+||||+++
T Consensus 365 ~~~~l~~~L~~~gI~~~~~~~~~~~--~~i~~~~------~~~~g-------~~~~~~~~~~i~i~~~~~~T~eDID~~v 429 (445)
T d3bc8a1 365 AVTQLGSMLFTRQVSGARAVPLGNV--QTVSGHT------FRGFM-------SHADNYPCAYLNAAAAIGMKMQDVDLFI 429 (445)
T ss_dssp HHHHHHHHHHHTTCCSCEEECSCCE--EEETTEE------EETTT-------TTSSCCSSCEEEEECCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcceeeccccc--cchhhhh------hhhcC-------CCCccCCCCeEEEeCcCCCCHHHHHHHH
Confidence 3445667788888754433222211 1000000 00000 0012334578999999999999999999
Q ss_pred HHHHHHHhh
Q psy16512 489 SFLNQYFLQ 497 (815)
Q Consensus 489 ~~L~~~~~~ 497 (815)
++|++++.+
T Consensus 430 ~~L~kilk~ 438 (445)
T d3bc8a1 430 KRLDKCLNI 438 (445)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.77 E-value=6.8e-18 Score=183.75 Aligned_cols=337 Identities=12% Similarity=0.032 Sum_probs=201.6
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~ 183 (815)
++++++++++++|.+. +++++|+|.|+.+++.++..++|| |+++..+|++.......++... ++.++++ ..++
T Consensus 33 v~~~E~~la~~~g~~~----ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~~~~~~~ai~~~g~~pv~~d~~~~~~~~d 108 (376)
T d1mdoa_ 33 NQELEAAFCRLTGNQY----AVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVT 108 (376)
T ss_dssp HHHHHHHHHHHHCCSE----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred HHHHHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHhCCCCCCEEEEecccccccccchhccccceeeecccccccCCC
Confidence 8899999999999853 778889999999999999668999 9999999999887777666555 6666654 3567
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.++++ ++++|++|+++| ..|...|+++|.++|+ ++|++||+|+||+.|...-+...-
T Consensus 109 ~~~l~~~-------i~~~tkaIi~~h---~~G~~~~~~~i~~i~~-----------~~~i~vIeD~a~a~g~~~~~~~~g 167 (376)
T d1mdoa_ 109 PEHIEAA-------ITPQTKAIIPVH---YAGAPADLDAIYALGE-----------RYGIPVIEDAAHATGTSYKGRHIG 167 (376)
T ss_dssp HHHHHHH-------CCTTEEEECCBC---GGGCCCCHHHHHHHHH-----------HHTCCBCEECTTCTTCEETTEETT
T ss_pred HHHHHHh-------cCCCCeEEEEeC---CCCCccchhHHHHHHH-----------hcCceEEeccchhccCeeCCeecc
Confidence 7777764 457899999875 5699999999999999 899999999999998753222111
Q ss_pred CCcEEEEcc--ccccccCCcceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 264 QPDFISISF--YKMFGYPTGLGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 264 ~~D~vv~S~--~K~~g~p~G~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
..++.++|| +|.++.+ +-|+++.+++.+ ++++.....|............... .......|......-..+..
T Consensus 168 ~~g~~~~Sf~~~K~l~~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~g~n~~~~~~~Aai 243 (376)
T d1mdoa_ 168 ARGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP---QAEVLAPGYKYNLPDLNAAI 243 (376)
T ss_dssp SSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC--------------CCEESSCCCBCCCCHHHHHH
T ss_pred cccCccccCCCcCCCCCC-CCCEEEEechhHHHHHHhhcccCCcccccccccccccc---cccchhcccccccchhhhhh
Confidence 234455565 5888743 347777766533 3343322211110000000000000 00011122211122222223
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcC
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLK 420 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~ 420 (815)
++..+.......++.+++++++.+.|+++ +...+...... .......+.+.+.. .....+.+++.+.|.++
T Consensus 244 ~~~qL~~~~~~~~~r~~~~~~~~~~L~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~Rd~l~~~L~~~ 314 (376)
T d1mdoa_ 244 ALAQLQKLDALNARRAAIAAQYHQAMADL------PFQPLSLPSWE--HIHAWHLFIIRVDE-ARCGITRDALMASLKTK 314 (376)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHTS------SCEECCCCSSC--EECCCSCEEEECCH-HHHSSCHHHHHHHHHHT
T ss_pred hhhhhhhhhHHHHHHhhhhhhhhhhcccc------ccccccccccc--cccccccccccccc-ccchhhHHHHHHHHHHC
Confidence 44445555444478888999999999988 45554433220 01111222222221 11112334688999999
Q ss_pred CcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 421 KIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 421 gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
||.++.... +.+.++.+ ...+..+ .....+......+.+.++...|++|+++++++|++++
T Consensus 315 gI~~~~~y~--~~~~~~~~-------~~~~~~~-----~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~ 375 (376)
T d1mdoa_ 315 GIGTGLHFR--AAHTQKYY-------RERFPTL-----TLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA 375 (376)
T ss_dssp TBCCBCCCC--CGGGSHHH-------HHHSTTC-----CCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCeeeECc--chhcCHHH-------HhhCCCC-----CCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 999876432 21111110 0000000 0000011123679999998889999999999999975
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=2.1e-18 Score=184.70 Aligned_cols=306 Identities=13% Similarity=0.075 Sum_probs=193.7
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.++++|+.+.|++. .+.++++..|+.+ +.++. ++|| +|+...-|...... .....+.| ...++..
T Consensus 51 ~~~le~~la~LE~~~~----a~~fsSGMaAisa-ll~ll-~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~--- 121 (380)
T d1ibja_ 51 RDALESLLAKLDKADR----AFCFTSGMAALSA-VTHLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT--- 121 (380)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHH-HHTTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHcCCce----EEehhhHHHHHHH-HHHhh-CCCCEEEEEecccccccchhhhhhccccccccccCcc---
Confidence 7889999999999754 4445555678875 45566 8999 88888777766554 34455556 3333332
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ +++++|++|++..++||+..+.|++.|+++|+ ++|++++||.+.+.+...-++ .
T Consensus 122 ~~~~~~~-------ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~-----------~~g~~~vVDnT~atP~~~~Pl-~ 182 (380)
T d1ibja_ 122 KLDEVAA-------AIGPQTKLVWLESPTNPRQQISDIRKISEMAH-----------AQGALVLVDNSIMSPVLSRPL-E 182 (380)
T ss_dssp SHHHHHH-------HCCSSEEEEEECSSCTTTCCCCCHHHHHHHHH-----------TTTCEEEEECTTTCTTTCCGG-G
T ss_pred hHHHHHH-------HhccCccEEEeccccccccccccHHHHHHHHH-----------HcCCeEEeecccccccccccc-c
Confidence 2333333 34578999999999999999999999999999 999999999998877643333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|.+|+++|... .|+++++++.. +.++.. .+...++++....+.+.
T Consensus 183 ~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~------------------------~~~~G~~l~p~~a~ll~ 238 (380)
T d1ibja_ 183 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFL------------------------QNSEGSGLAPFDCWLCL 238 (380)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHH------------------------HHHTTCBCCHHHHHHHH
T ss_pred cCCCEEEecccceeccccCccccccccchhhHHHHHHhh------------------------ccccCCcCCHHHHHHHH
Confidence 6899999999999996543 57777775432 222111 12334456666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCC---------CCCcccceEEEEEecCCCCccC
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYG---------ESKYQGNIVNFNLLHKDGTYYG 409 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~---------~~~~~~~i~~f~~~~~~~~~~~ 409 (815)
.+++.+. .++++..+.+..+.+.|++. |.++ ++-|.-.+ .....+++++|.+.+...
T Consensus 239 rgl~Tl~---lRm~~~~~nA~~lA~~L~~h------p~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~---- 305 (380)
T d1ibja_ 239 RGIKTMA---LRIEKQQENARKIAMYLSSH------PRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVAL---- 305 (380)
T ss_dssp HHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHH----
T ss_pred hcchhhh---hhHHHHHHHHHHHHHHHHhC------CCeeEEeccccccCccccccccccccccccccccccHHHH----
Confidence 6666544 24577788888888888876 3332 33222100 123456788886543211
Q ss_pred HHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHH
Q psy16512 410 YSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKY 486 (815)
Q Consensus 410 ~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~ 486 (815)
...+.+.|+-..+.++.|...+ ++....+..++++.. ..-|..++.||||+|.++.++-++.
T Consensus 306 a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~r---------------~~~Gi~~~lvRlSvGlE~~eDLi~D 370 (380)
T d1ibja_ 306 SKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVR---------------EARGLTEDLVRISAGIEDVDDLISD 370 (380)
T ss_dssp HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSS---------------SSSSCCTTCEEEECCSSCHHHHHHH
T ss_pred HHHHHHhCCcCeEeeccCCccccccCchhhhhhcCCHHHH---------------HHcCCCcCeEEEEeccCCHHHHHHH
Confidence 1234555555555555554222 223223333332211 1125567899999998765555555
Q ss_pred HHHHHH
Q psy16512 487 FLSFLN 492 (815)
Q Consensus 487 lv~~L~ 492 (815)
|-++|+
T Consensus 371 l~qAl~ 376 (380)
T d1ibja_ 371 LDIAFK 376 (380)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.77 E-value=7.5e-18 Score=177.71 Aligned_cols=310 Identities=13% Similarity=0.079 Sum_probs=204.4
Q ss_pred HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhhcc
Q psy16512 109 QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDARNM 184 (815)
Q Consensus 109 ~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~~~ 184 (815)
.++++++++.|+.. .+.++++.+|+..++.++. ++|| +|++..-|...+. ....+.+.| ...++.. +.
T Consensus 2 aLE~~la~Leg~~~----a~~~sSGMaAi~~~l~~ll-~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~---d~ 73 (331)
T d1pffa_ 2 ALEGKIAKLEHAEA----CAATASGMGAIAASVWTFL-KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA---VP 73 (331)
T ss_dssp HHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT---ST
T ss_pred HHHHHHHHHhCCCe----EEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc---ch
Confidence 36788999999754 5556777789999999988 9999 8887776755544 445566677 3333332 34
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCCC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQHQ 264 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~~ 264 (815)
+.+++ ++.++|++|++..++||+..+.|++.+.++++ +++|++++||.+.+.+...-++ .++
T Consensus 74 ~~~~~-------~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a----------~~~~~~~vVDnT~atp~~~~pl-~~G 135 (331)
T d1pffa_ 74 GNIEK-------HLKPNTRIVYFETPANPTLKVIDIEDAVKQAR----------KQKDILVIVDNTFASPILTNPL-DLG 135 (331)
T ss_dssp THHHH-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHT----------TSSSCEEEEECTTTHHHHCCGG-GGT
T ss_pred hhHhh-------hcccccceeeeecccccccccccchhhhhhhh----------cccCceEEeecccccccccccc-ccC
Confidence 44444 44588999999999999999999999988854 1789999999998766532222 458
Q ss_pred CcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGF 342 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al 342 (815)
+|+++.|.+|+++|... .|+++.+++.....+... ........++....+.+..++
T Consensus 136 aDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~----------------------~~~~~G~~l~p~~a~ll~rgl 193 (331)
T d1pffa_ 136 VDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQG----------------------IKDITGAIISPHDAWLITRGT 193 (331)
T ss_dssp CSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTC----------------------CCCCCCCCCCHHHHHHHHHHH
T ss_pred CCEEEecchhhcCCCCccccccccccccchhhhhhhh----------------------hhhccCCCCCHHHHHHHHHHH
Confidence 99999999999995543 477777765543221100 012234456666666666676
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC---------CCcccceEEEEEecCCCCccCHHH
Q psy16512 343 DTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGYSE 412 (815)
Q Consensus 343 ~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~~~ 412 (815)
+.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+. ....+++++|.+.+.+ . ...
T Consensus 194 ~Tl~---~Rm~~~~~nA~~lA~~L~~h------p~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~--~--~~~ 260 (331)
T d1pffa_ 194 LTLD---MRVKRAAENAQKVAEFLHEH------KAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLE--K--AKK 260 (331)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHC------TTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHH--H--HHH
T ss_pred HHHH---HHHHHHHHHHHHHHHhhhhC------CcEEeeccccccCccHHHHHhhcccccCcccceeeccHH--H--HHH
Confidence 6554 24577788888888888876 444 3333321111 1235889999986421 1 123
Q ss_pred HHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHH
Q psy16512 413 VQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLS 489 (815)
Q Consensus 413 v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~ 489 (815)
+.+.|.-.++.++.|...+ ++....+..+++++.... |.+++.||+|+|.++.++-++.|-+
T Consensus 261 f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~~---------------Gi~~~liRlsvGlE~~~DLi~Dl~~ 325 (331)
T d1pffa_ 261 VLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAA---------------GLTDNLIRLSVGCENVQDIIDDLKQ 325 (331)
T ss_dssp HHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHT---------------TCCTTEEEEECCSSCHHHHHHHHHH
T ss_pred HHHhCCcceecccCCCCceeEeCccccccccCCHHHHHhc---------------CCCcCeEEEEeeeCCHHHHHHHHHH
Confidence 4555555555666665432 444455666766654433 5667999999999877777777777
Q ss_pred HHHHH
Q psy16512 490 FLNQY 494 (815)
Q Consensus 490 ~L~~~ 494 (815)
+|+++
T Consensus 326 AL~~i 330 (331)
T d1pffa_ 326 ALDLV 330 (331)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 77654
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.76 E-value=1.6e-17 Score=181.88 Aligned_cols=287 Identities=11% Similarity=0.079 Sum_probs=181.1
Q ss_pred HHHHHHHHhHc----CCCCCceeEEecCCchhhHHHHHhhhc-------cCCCc-EEEecCCCcchhhHHHHhhccc-eE
Q psy16512 108 DQMRTKILQYF----NTDSDHYSVIFTSGATSAIKTVSEYFE-------FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IY 174 (815)
Q Consensus 108 ~~~r~~la~~~----g~~~~~~~iv~t~g~t~al~~~~~al~-------~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v 174 (815)
.++++.|+++. |+..++..|++++|+|++|.+++.++. ..||+ ||++.+.|+.+....+++.... .+
T Consensus 103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~~ 182 (425)
T d2hoxa1 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW 182 (425)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE
T ss_pred HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCcc
Confidence 45667777664 444455569999999999999999984 26888 9999988887766666554332 22
Q ss_pred EcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 175 SFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
.. |.+.+.+ ..+++++++++++||||||.+. +. ..+++.+|+|.++..+
T Consensus 183 ~~------D~~~~~~-------~~~~~~~ii~l~sPnNPtG~l~---------~~---------v~~~~~~I~DEaY~~~ 231 (425)
T d2hoxa1 183 AG------NAANYVN-------VSNPEQYIEMVTSPNNPEGLLR---------HA---------VIKGCKSIYDMVYYWP 231 (425)
T ss_dssp EE------EGGGGTT-------CSCGGGEEEEEESSCTTTCCCC---------CC---------SSTTCEEEEECTTCST
T ss_pred CC------CHHHHHh-------hCCCCceEEEEECCCCCCcchh---------hh---------hhhCCEEEEeccccCc
Confidence 32 2233333 3346799999999999999863 11 1678999999998654
Q ss_pred CCCCCCCCCCCcEEEEccccccccCCc--ceEEEEecccc-cccCcccccCceEEEEecCCcccccccCccccccCCCCC
Q psy16512 255 SNMLDLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSA-HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 255 ~~~~dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~-~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~ 331 (815)
....-......++++.|++|.|| .+| +||++++++.+ +++.... .+...+++
T Consensus 232 ~f~~~~~~~~~~Ivl~S~SK~fg-laGlRiGw~i~~~~~i~~~~~~~~------------------------~~~~~~vs 286 (425)
T d2hoxa1 232 HYTPIKYKADEDILLFTMSKFTG-HSGSRFGWALIKDESVYNNLLNYM------------------------TKNTEGTP 286 (425)
T ss_dssp TTSCCCSCBCCSEEEEEHHHHTS-CGGGCCEEEEECCHHHHHHHHHHH------------------------HHHTSSCC
T ss_pred cccchhhhcCCeEEEEeCHHhcc-CcchheeeEEeCCHHHHHHHHHhh------------------------ccCcccCC
Confidence 32111223457899999999999 668 89998886543 3332111 11122445
Q ss_pred hhHHHHHHHHHHHHHhhh-------hh-----HHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCC-----C--CCCCcc
Q psy16512 332 YLAIISLKYGFDTMEKKR-------KS-----FTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTD-----Y--GESKYQ 392 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~-------~~-----~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~-----~--~~~~~~ 392 (815)
..+..++.++++...... .. .+++++.++++.+.|.+. +.+.+..... + ......
T Consensus 287 ~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~------~~~~l~~~p~~~~~~f~~~~~~~~ 360 (425)
T d2hoxa1 287 RETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQS------DRFSYQELPQSEYCNYFRRMRPPS 360 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTS------SSEECCCCCSCEEETTTTEEECCC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCceeeccCCccceeeeeeccCCC
Confidence 555555556665432110 01 144555666777777665 2332221100 0 001123
Q ss_pred cceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEE
Q psy16512 393 GNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIR 472 (815)
Q Consensus 393 ~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iR 472 (815)
+.+.++.....+.. ++.++|.++||.+++|..+. . .++++|
T Consensus 361 ~~f~wl~~~~~~~~-----~~~~lL~e~gI~v~pGs~FG---------~-------------------------~~~yvR 401 (425)
T d2hoxa1 361 PSYAWVKCEWEEDK-----DCYQTFQNGRINTQNGVGFE---------A-------------------------SSRYVR 401 (425)
T ss_dssp CSEEEEEECSGGGC-----SHHHHHHHTTEECEEGGGGT---------S-------------------------CTTEEE
T ss_pred cceeeeeCCCChHH-----HHHHHHHhCCEEEEechhcC---------C-------------------------CCCEEE
Confidence 45666665432222 26778899999999986542 1 137999
Q ss_pred EeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 473 ISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 473 vs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
||+. .++|+++.+++.|++++.+
T Consensus 402 isl~--~~~e~ld~~l~rL~~~v~a 424 (425)
T d2hoxa1 402 LSLI--KTQDDFDQLMYYLKDMVKA 424 (425)
T ss_dssp EECS--SCHHHHHHHHHHHHHHHTC
T ss_pred EEec--CCHHHHHHHHHHHHHHHhc
Confidence 9986 4788999999999998764
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.76 E-value=1.8e-17 Score=178.90 Aligned_cols=330 Identities=12% Similarity=0.026 Sum_probs=201.8
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.++++|+.+.|+.. .+.++++..|+..++.++. ++|| +|++..-|..... ....+.+.| ...++....
T Consensus 60 ~~~LE~~la~LE~~~~----a~~~~SGmaAi~~~~~~l~-~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~~- 133 (421)
T d2ctza1 60 VDVLEKRLAALEGGKA----ALATASGHAAQFLALTTLA-QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREER- 133 (421)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCC-
T ss_pred HHHHHHHHHHHhCCCe----EEEecChHHHHHHHHHhhc-ccccceeecCCcCCchhHHHHHHHhhccccceecccccC-
Confidence 7889999999999754 4555666679999999998 8998 8888877766655 344556666 333443211
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNMLDLK 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~~dl~ 261 (815)
.+..+ ..+.++|++|++..|.||+..+.|++.|+++|+ ++|++++||.+.+ .+...-++
T Consensus 134 -~~~~~-------~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~-----------~~g~~~vvDnT~a~tP~~~~Pl- 193 (421)
T d2ctza1 134 -PEEFL-------ALTDEKTRAWWVESIGNPALNIPDLEALAQAAR-----------EKGVALIVDNTFGMGGYLLRPL- 193 (421)
T ss_dssp -HHHHH-------HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHH-----------HHTCEEEEECGGGGGGTSCCGG-
T ss_pred -cchhc-------cccCCCceEEEEcCCCcceeEecchHHHHHHHH-----------hcCCceEecccccccceecccc-
Confidence 11111 134578999999999999999999999999999 8999999999987 45432222
Q ss_pred CCCCcEEEEccccccccCCc--ceEEEEeccccc-ccCcccc-----cCceEEEEec--CCcccccccCccccccCCCCC
Q psy16512 262 QHQPDFISISFYKMFGYPTG--LGALIVKQKSAH-VLNKTFY-----GGGTVKISMA--NENFHIKKDGLFEKFEDGTVN 331 (815)
Q Consensus 262 ~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~-~l~~~~~-----g~~~~~~~~~--~~~~~~~~~~~~~~~~~gt~~ 331 (815)
++++|+++.|.+|+++|... .|+++.+++... ..+.... +......... ...+.........+..++.++
T Consensus 194 ~~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~s 273 (421)
T d2ctza1 194 AWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALG 273 (421)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ccCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCC
Confidence 56899999999999996543 577766655431 1110000 0000000000 000000000000112355666
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcE-EEcCCCCCCC----------CCcccceEEEEE
Q psy16512 332 YLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLV-ELYHDTDYGE----------SKYQGNIVNFNL 400 (815)
Q Consensus 332 ~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~-~l~~~~~~~~----------~~~~~~i~~f~~ 400 (815)
....+.+..+++.+. .++++..+.+..+.+.|++. |.+ +++-|.-.+. ....|++++|.+
T Consensus 274 P~~a~l~~rgl~TL~---lRm~~~~~nA~~vA~~L~~h------p~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l 344 (421)
T d2ctza1 274 PFEAWVVLLGMETLS---LRAERHVENTLHLAHWLLEQ------PQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGL 344 (421)
T ss_dssp HHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEE
T ss_pred HHHHHHHhcCCcchh---hHHHHHHHHHHHHHhhhccC------CCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEe
Confidence 666666656655543 34588888888899999887 666 4544432111 123578999998
Q ss_pred ecCCCCccCHHHHHHhhhcCCcEeccCccC---CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 401 LHKDGTYYGYSEVQNLANLKKIQLRTGCHC---NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 401 ~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~---~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
.+.... ...+.+.|.-..+.++.|..- .++....+..+++++.... |..++.||+|+|.
T Consensus 345 ~~~~~~---a~~f~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~---------------GI~~~liRlSvGl 406 (421)
T d2ctza1 345 KGGYEA---AKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQA---------------GVSPEMVRLSVGL 406 (421)
T ss_dssp TTHHHH---HHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHH---------------TCCTTEEEEECCS
T ss_pred cCCHHH---HHHHHHcCCcCeeccccccccceeeCcccccchhCCHHHHHhc---------------CCCcCeEEEEecc
Confidence 642111 123555566555566666322 2344444566777665444 5667999999998
Q ss_pred CCCHHHHHHHHH
Q psy16512 478 ASNWDDVKYFLS 489 (815)
Q Consensus 478 ~~t~edi~~lv~ 489 (815)
++.++-++.|-+
T Consensus 407 Ed~eDLi~DL~q 418 (421)
T d2ctza1 407 EHVEDLKAELKE 418 (421)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 654443444433
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.75 E-value=1.6e-17 Score=176.96 Aligned_cols=316 Identities=12% Similarity=0.017 Sum_probs=188.2
Q ss_pred ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCC
Q psy16512 70 AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEG 149 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~g 149 (815)
.+..+|++++++.++.... ...+..... ++++|+++++++|.+.+ ++||+|+|+|+..++.++. ..+
T Consensus 12 ~~g~~P~v~~A~~~a~~~~-----~~~~~~~~~----~~~l~~~la~~~g~~~~---v~f~~sGt~An~~a~~~~~-~~~ 78 (345)
T d1v72a1 12 IAGASPEVAQALVKHSSGQ-----AGPYGTDEL----TAQVKRKFCEIFERDVE---VFLVPTGTAANALCLSAMT-PPW 78 (345)
T ss_dssp GCCCCHHHHHHHHHTTSSC-----CCSTTCSHH----HHHHHHHHHHHHTSCCE---EEEESCHHHHHHHHHHTSC-CTT
T ss_pred CCCCCHHHHHHHHHHhccC-----ccccCCCHH----HHHHHHHHHHHHCCCcE---EEECCchHHHHHHHHHHHH-hcC
Confidence 3445788999886643211 111333445 88999999999998543 8999999999999999887 666
Q ss_pred c-EEEecCCCcchhhHHHHhhccc--eEE--cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH-
Q psy16512 150 S-FIYLTDNHTSVLGMRELVKTNQ--IYS--FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC- 223 (815)
Q Consensus 150 d-vv~~~~~h~s~~~~~~~~~~~g--~v~--~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I- 223 (815)
+ ++.....|.+...........+ ..+ ....+..+++.+...+.............++...+.|+.|...+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (345)
T d1v72a1 79 GNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIE 158 (345)
T ss_dssp EEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHH
T ss_pred CccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhh
Confidence 6 7777778877665444433334 333 334445666666554421110111112345555666777777666555
Q ss_pred --HHHhhccccccccccCCCCeEEEEecccccCCC---CCCCC--CC--CCcEEEEccccccccCCcceEEEEecccccc
Q psy16512 224 --NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN---MLDLK--QH--QPDFISISFYKMFGYPTGLGALIVKQKSAHV 294 (815)
Q Consensus 224 --~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~---~~dl~--~~--~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~ 294 (815)
.++|+ ++|+++++|+++..+.. ..++. .. ..+.++.+.+|..+ ...+...........
T Consensus 159 ~i~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 225 (345)
T d1v72a1 159 AIGDVCK-----------SSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGV--LAAEAIVLFNTSLAT 225 (345)
T ss_dssp HHHHHHH-----------HTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTC--SSCEEEEESSGGGHH
T ss_pred hHHHHHH-----------hcCceeeecccccceeccccccCHHHhhccccccccccCcccccc--ccccccccchhhhhh
Confidence 45566 89999999999765321 11111 11 23455555555444 223344333322111
Q ss_pred cCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhh-h-HHHHHHHHHHHHHHHHhcccc
Q psy16512 295 LNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRK-S-FTNAFELSQYTYFYFKQLSYS 372 (815)
Q Consensus 295 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~-~-~~~~~~l~~~l~~~L~~l~~~ 372 (815)
.... ...+..++.+... .++..+...+..... . ..+...+..++.+.+.++
T Consensus 226 ~~~~-----------------------~~~~~~~~~~~~~-~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 278 (345)
T d1v72a1 226 EMSY-----------------------RRKRAGHLSSKMR-FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL--- 278 (345)
T ss_dssp HHHH-----------------------HHHHTTCCCSSTH-HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hccc-----------------------cccccccccchhh-HHhhhhHHHHHHhhhhhhccchhhHHHHHHHHHHhc---
Confidence 0000 0011122222222 222233333322211 1 266677778888888888
Q ss_pred CCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhc
Q psy16512 373 NGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQ 452 (815)
Q Consensus 373 ~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 452 (815)
+++.+..+.. ++++.+.++. .+.+.|.++||.+..+.
T Consensus 279 ---~g~~~~~p~~-------~niv~~~~~~---------~~~~~L~~~gi~v~~~~------------------------ 315 (345)
T d1v72a1 279 ---GGVEVLGGTE-------ANILFCRLDS---------AMIDALLKAGFGFYHDR------------------------ 315 (345)
T ss_dssp ---TTEEEESCCC-------SSEEEEEECH---------HHHHHHHHTTCBCBCSS------------------------
T ss_pred ---CCcEeccCCC-------ccEEEEEcCH---------HHHHHHHHcCCCccccC------------------------
Confidence 7999887654 6888887742 36677888899875431
Q ss_pred CCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 453 GHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 453 ~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
...+.+|++++.++|+||||+++++|++.
T Consensus 316 -------------~~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 316 -------------WGPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp -------------SSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred -------------CCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 11378999999999999999999999873
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=2e-17 Score=177.89 Aligned_cols=312 Identities=10% Similarity=0.038 Sum_probs=200.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~~~ 182 (815)
...++++++++.|+.. .+.++++..|+..++.++. ++|| +|.+..-|...... .+.+.+.| ...++..
T Consensus 60 ~~~le~~la~LEg~~~----a~~~~SGMaAi~~~l~~l~-~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~~--- 131 (391)
T d1cl1a_ 60 HFSLQQAMCELEGGAG----CVLFPCGAAAVANSILAFI-EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL--- 131 (391)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHC-CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCcc----EEEeccccceeeehhhccc-CCCCeEEEecccccchhhhhhhcccccccccccccCc---
Confidence 7889999999999754 5666777789999999998 8999 88888777766654 44566666 3334432
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
+.+.+++ ++.++|++|++..+.||+..+.|++.|++++++. ++|++++||.+.+.+...-++ .
T Consensus 132 d~~~~~~-------~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~---------~~g~~~vVDnT~atP~~~~Pl-~ 194 (391)
T d1cl1a_ 132 IGADIVK-------HLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSV---------VPDAIIMIDNTWAAGVLFKAL-D 194 (391)
T ss_dssp CGGGGGG-------TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH---------CTTCEEEEECTTTTTTSSCGG-G
T ss_pred ccccccc-------ccccccceeeecccCcccccccccHHHHHHHHhc---------cCCcEEEEeccccchhhhccc-c
Confidence 3334444 4457899999999999999999999999999722 579999999999877643333 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKY 340 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~ 340 (815)
+++|+++.|.+|+++|... .|.++.+++..+.+... .+...++++....+.+..
T Consensus 195 ~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~------------------------~~~~G~~~~p~~a~ll~r 250 (391)
T d1cl1a_ 195 FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLREN------------------------AYLMGQMVDADTAYITSR 250 (391)
T ss_dssp GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHH------------------------HHHTTCCCCHHHHHHHHH
T ss_pred cccceEEeecchhccccccccccceeccccccccchhh------------------------hhcccccCCchhhhhhhc
Confidence 6899999999999996543 46666666654433211 123344566666555555
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEE-EcCCCCCCC---------CCcccceEEEEEecCCCCccCH
Q psy16512 341 GFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVE-LYHDTDYGE---------SKYQGNIVNFNLLHKDGTYYGY 410 (815)
Q Consensus 341 al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~-l~~~~~~~~---------~~~~~~i~~f~~~~~~~~~~~~ 410 (815)
+++.+. .++++..+.+..+.+.|++. |.+. ++.|...+. ....+++++|.+....... ..
T Consensus 251 gl~TL~---lR~~~~~~nA~~vA~~L~~h------p~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e-~~ 320 (391)
T d1cl1a_ 251 GLRTLG---VRLRQHHESSLKVAEWLAEH------PQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNE-EL 320 (391)
T ss_dssp HHTTHH---HHHHHHHHHHHHHHHHHHTC------TTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHH-HH
T ss_pred cchhHH---HHHHHHHHHHHHHHHHHHhc------ccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHH-HH
Confidence 555443 34578888888888888877 5554 333321111 1234678899887532211 01
Q ss_pred HHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHH
Q psy16512 411 SEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYF 487 (815)
Q Consensus 411 ~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~l 487 (815)
..+.+.|+-..+.++.|..-+ ++....+..+.++ -.-|..++.||+|+|.++.++-++.|
T Consensus 321 ~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~~~-----------------~~~gi~~~liRlSVGlEd~eDLi~Dl 383 (391)
T d1cl1a_ 321 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ-----------------GEIDFSGTLIRLHIGLEDVDDLIADL 383 (391)
T ss_dssp HHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTSTT-----------------CCCCCCSCEEEEECCSSCHHHHHHHH
T ss_pred HHHHHcCCcceEeeCCCCCccceeCCcccccccCCch-----------------HhcCCCcCEEEEEeccCCHHHHHHHH
Confidence 123333444444445553211 1111111111110 01155678999999987766667777
Q ss_pred HHHHHHH
Q psy16512 488 LSFLNQY 494 (815)
Q Consensus 488 v~~L~~~ 494 (815)
-++|+++
T Consensus 384 ~~AL~~i 390 (391)
T d1cl1a_ 384 DAGFARI 390 (391)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777664
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.71 E-value=2.1e-17 Score=176.10 Aligned_cols=322 Identities=11% Similarity=0.063 Sum_probs=192.2
Q ss_pred cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc
Q psy16512 71 GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS 150 (815)
Q Consensus 71 ~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd 150 (815)
+.+++++++++.+... ++. .+..... +.++++++++++|.+. +++++|+|+|+.+++.++. .+|+
T Consensus 10 t~p~p~v~~A~~~a~~----g~~--~yg~~p~----~~~le~~lA~~~G~~~----~~~~~sGt~A~~~al~a~~-~~g~ 74 (343)
T d1m6sa_ 10 TKPTEEMRKAMAQAEV----GDD--VYGEDPT----INELERLAAETFGKEA----ALFVPSGTMGNQVSIMAHT-QRGD 74 (343)
T ss_dssp CCCCHHHHHHHHTCCC----CCG--GGTCCHH----HHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHHC-CTTC
T ss_pred CCCCHHHHHHHHhhhc----CCc--ccCCCHH----HHHHHHHHHHHHCCCe----EEEeCCHHHHHHHHHHHHh-ccCC
Confidence 4456778888754321 111 1222233 8899999999999752 7888999999999999998 8888
Q ss_pred -EEEecCCCcchhhHHHHhhccc--eEEcCch-hhhcchhhhhhhhhhhhhcCCCc-cEEEEecccCCCccccChHHHHH
Q psy16512 151 -FIYLTDNHTSVLGMRELVKTNQ--IYSFSVD-DARNMLNEFKESQENVENMRHSN-SLFVYPAESNFSGTKYPLSWCNT 225 (815)
Q Consensus 151 -vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t-~lv~i~~~~n~tG~~~~l~~I~~ 225 (815)
+++....|.+.......+...+ ..+++.. ...+++..+..+...... .+++ .++....++++.|.+.|++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (343)
T d1m6sa_ 75 EVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIH-FPRTSLIAIENTHNRSGGRVVPLENIKE 153 (343)
T ss_dssp EEEEETTCHHHHSSTTHHHHHTCCEEEEECEETTEECHHHHHHHSCCSCTT-SCCEEEEEEESSBTTTTSBCCCHHHHHH
T ss_pred ceeccccccceeeecccccccccceeeccccccCccCHHHHHHhhhhhhcc-cccccccccccccccCCceecCHHHHHH
Confidence 7777777766554444433333 4444432 334555554433211111 1233 35566677788888888887666
Q ss_pred HhhccccccccccCCCCeEEEEecccccCCCCCCCC-----CCCCcEEEEccccccccCCcceEEEEecccccccCcccc
Q psy16512 226 VHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK-----QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFY 300 (815)
Q Consensus 226 l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~-----~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~ 300 (815)
+++ .|+++|+++++|+++..+....... ....+..+.+.+|..++. +.|+.+..++.+.......
T Consensus 154 i~~--------~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~- 223 (343)
T d1m6sa_ 154 ICT--------IAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARKAR- 223 (343)
T ss_dssp HHH--------HHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHHHH-
T ss_pred HHH--------HHHhcCeEEEeccccccccccccccchhhhcccccccccccccccccc-ccccccccHHHHhhhHhhC-
Confidence 654 3338999999999876543211110 112456666666655534 3566666655543221110
Q ss_pred cCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEE
Q psy16512 301 GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVEL 380 (815)
Q Consensus 301 g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l 380 (815)
....++.......++ .............+...+...++.+.+..+ +....
T Consensus 224 -----------------------~~~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 273 (343)
T d1m6sa_ 224 -----------------------KMLGGGMRQAGVLAA-AGIIALTKMVDRLKEDHENARFLALKLKEI------GYSVN 273 (343)
T ss_dssp -----------------------HHHTCCCSSTHHHHH-HHHHHHHHSSTTHHHHHHHHHHHHHHHHHH------TCBCC
T ss_pred -----------------------cccccccchhHHHHH-hhhhhhhhhHHHHHHHHHHHHHhhhHHHHh------ccCcc
Confidence 111222232332222 222222222223355566666777777766 33333
Q ss_pred cCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcc
Q psy16512 381 YHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDK 460 (815)
Q Consensus 381 ~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~ 460 (815)
..+. ..+++.+.+++.. ....++.+.|.++||.+++..
T Consensus 274 ~~~~-------~~~~v~~~~~~~~---~~a~~l~~~L~~~Gi~v~~~~-------------------------------- 311 (343)
T d1m6sa_ 274 PEDV-------KTNMVILRTDNLK---VNAHGFIEALRNSGVLANAVS-------------------------------- 311 (343)
T ss_dssp GGGC-------CSSEEEEECTTSS---SCHHHHHHHHHHHTEECEEEE--------------------------------
T ss_pred CCCC-------CceEEEEEeCCCc---ccHHHHHHHHHHCCCEEecCC--------------------------------
Confidence 3332 2577887765432 234568889999999986421
Q ss_pred cccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 461 DIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 461 ~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
.+++|++++..+|+||||+++++|++++++
T Consensus 312 -------~~~iRi~~~~~~t~edid~~v~~l~~v~~~ 341 (343)
T d1m6sa_ 312 -------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341 (343)
T ss_dssp -------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 267999999999999999999999998865
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.71 E-value=3.6e-17 Score=172.54 Aligned_cols=318 Identities=12% Similarity=0.014 Sum_probs=177.9
Q ss_pred ccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-
Q psy16512 72 VYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS- 150 (815)
Q Consensus 72 ~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd- 150 (815)
..+|++++++.+...... . .+..... .+++|+++++++|+++++ |+||+|+|+|+.+++.++. .+++
T Consensus 11 g~~P~v~eAl~~~~~~~~----~-~y~~~~~----~~~lr~~ia~~~g~~~~~--v~~tsggtean~~a~~~~~-~~~~~ 78 (340)
T d1svva_ 11 GMHPKILDLMARDNMTQH----A-GYGQDSH----CAKAARLIGELLERPDAD--VHFISGGTQTNLIACSLAL-RPWEA 78 (340)
T ss_dssp CCCHHHHHHHHHHTTCCC----C-STTCSHH----HHHHHHHHHHHHTCTTSE--EEEESCHHHHHHHHHHHHC-CTTEE
T ss_pred CCCHHHHHHHHHHhhcCC----C-CCCCCHH----HHHHHHHHHHHhCCCcce--EEEcCCHHHHHHHHHHHHh-hhccc
Confidence 346788998876543211 1 1222344 789999999999998876 9999999999999999988 7777
Q ss_pred EEEecCCCcchhhHHHHhhccc-eEE-cCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhh
Q psy16512 151 FIYLTDNHTSVLGMRELVKTNQ-IYS-FSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHR 228 (815)
Q Consensus 151 vv~~~~~h~s~~~~~~~~~~~g-~v~-~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~ 228 (815)
++.....|.+............ ... .........+....+.. ........+..+++....|..|...+.+++..++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (340)
T d1svva_ 79 VIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALH-ENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISA 157 (340)
T ss_dssp EEEETTSHHHHSSTTHHHHTTCCEEEECCTTSCCCHHHHHHHHH-HSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHH
T ss_pred cccccccceeeeecccccccceeeeecccccccccchhHHHHhh-hhhcccCCcceeeeecccccccccccHHHhhhhhc
Confidence 7777777766554333333333 222 11111111111111111 01111123444555555566677777666544333
Q ss_pred ccccccccccCCCCeEEEEecccccCCCCCCCCCC-------CCcEEEEccccccccCCcceEEEEecccccccCccccc
Q psy16512 229 NHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH-------QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYG 301 (815)
Q Consensus 229 ~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~-------~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g 301 (815)
.|.++|.++++|+++..+....+.... ..+....+..|..+.+ +.++..............
T Consensus 158 --------~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 225 (340)
T d1svva_ 158 --------SCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMF-GEALIILNDALKPNARHL--- 225 (340)
T ss_dssp --------HHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSS-CEEEEECSGGGCTTHHHH---
T ss_pred --------ccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccc-cccccccchhhhhhhhhh---
Confidence 122789999999998765544433322 1345566666655522 233333222221111000
Q ss_pred CceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHhccccCCCCcEE
Q psy16512 302 GGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKS-F-TNAFELSQYTYFYFKQLSYSNGQPLVE 379 (815)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~-~-~~~~~l~~~l~~~L~~l~~~~~~p~~~ 379 (815)
.....++.+.... +..+++..+...... . ++...++.++...|+.. +++
T Consensus 226 ---------------------~~~~~~~~~~~~~-~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------g~~ 276 (340)
T d1svva_ 226 ---------------------IKQRGALMAKGWL-LGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC-------GIR 276 (340)
T ss_dssp ---------------------HHHTTCCCTTTHH-HHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-------TCC
T ss_pred ---------------------cccccCccchhhH-HHHHHHHHhhhhHHHHHHHHHHHHHhhhHHHHhcC-------CCe
Confidence 0111222222222 222333333222211 2 77888888898899886 788
Q ss_pred EcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCc
Q psy16512 380 LYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDD 459 (815)
Q Consensus 380 l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~ 459 (815)
++.|.. ++++.+.+++ ++...|.++++.......
T Consensus 277 ~~~p~~-------~~~v~~~~~~---------~~~~~l~~~~~~~~~~~~------------------------------ 310 (340)
T d1svva_ 277 LAWPSA-------SNQLFPILEN---------TMIAELNNDFDMYTVEPL------------------------------ 310 (340)
T ss_dssp BSSCCS-------SSEECBEEEH---------HHHHHHTTTEECEEEEEE------------------------------
T ss_pred eecCCC-------ceEEEEeCCH---------HHHHHHHHhhhhhccccc------------------------------
Confidence 776653 6777777653 134444444433221100
Q ss_pred ccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHH
Q psy16512 460 KDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQY 494 (815)
Q Consensus 460 ~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~ 494 (815)
....+.||+|+++++|++|||+++++|+++
T Consensus 311 -----~~~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 311 -----KDGTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -----TTTEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -----CCCCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 011489999999999999999999999873
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1.2e-16 Score=171.60 Aligned_cols=312 Identities=12% Similarity=0.057 Sum_probs=191.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhh-HHHHhhccc--eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLG-MRELVKTNQ--IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~-~~~~~~~~g--~v~~~~~~~~ 182 (815)
.+.++++|+++.|.+. .++| +++.+|+..++ ++. .+|| +|++...|...+. +...+.+.| ...++.+
T Consensus 57 ~~~lE~~la~LE~~~~---a~~~-sSGmaAi~~~l-~~l-~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~~~--- 127 (393)
T d1n8pa_ 57 RENLERAVAALENAQY---GLAF-SSGSATTATIL-QSL-PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL--- 127 (393)
T ss_dssp HHHHHHHHHHHTTCSE---EEEE-SCHHHHHHHHH-HTS-CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH---
T ss_pred HHHHHHHHHHHhCCce---EEEe-cCchhHHHhhh-hcc-cCCCeeeeeeeecccchhhhhhhhhcccceeEEeecc---
Confidence 8889999999999754 2455 45566887665 444 6787 8777776655444 445555555 2223321
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCC
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQ 262 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~ 262 (815)
.+.+++ .+.++|++|++..|.||+..+.|++.|++++++. +.++|++++||.+.+.+...-++ .
T Consensus 128 -~~~~~~-------~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~-------~~~~g~~lvVDnT~atP~~~~Pl-~ 191 (393)
T d1n8pa_ 128 -LNDLPQ-------LIKENTKLVWIETPTNPTLKVTDIQKVADLIKKH-------AAGQDVILVVDNTFLSPYISNPL-N 191 (393)
T ss_dssp -HHHHHH-------HSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHH-------TTTTTCEEEEECTTTHHHHCCGG-G
T ss_pred -hHHHHH-------HhhhhcceeEecCcchhhhhccchhhhhhhhhhh-------cccCCceEEEecCccCcccCCch-h
Confidence 123333 4458899999999999999999999999998832 22679999999998776532222 4
Q ss_pred CCCcEEEEccccccccCCc--ceEEEEeccc-ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 263 HQPDFISISFYKMFGYPTG--LGALIVKQKS-AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 263 ~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~-~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
+++|+++.|..|+++|... .|+++.+++. .++++.. ++...++++....+.+.
T Consensus 192 ~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~------------------------~~~~G~~~~p~~a~ll~ 247 (393)
T d1n8pa_ 192 FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFL------------------------QNAIGAIPSPFDAWLTH 247 (393)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHH------------------------HHHHCCCCCHHHHHHHH
T ss_pred hCCCEEEEccccccCCCCccccceeeecchhHHHHHHHH------------------------HhhcCCCCChHHHHHHH
Confidence 5899999999999996544 4666555543 3333211 12334456666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCC-----------CCcccceEEEEEecCCCCc
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGE-----------SKYQGNIVNFNLLHKDGTY 407 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~-----------~~~~~~i~~f~~~~~~~~~ 407 (815)
.+++.+. .++++..+.+..+.+.|.+.. |. -+++-|...+. ....|++++|.+.+... .
T Consensus 248 rgl~Tl~---lR~~~~~~nA~~lA~~L~~~~-----~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~-~ 318 (393)
T d1n8pa_ 248 RGLKTLH---LRVRQAALSANKIAEFLAADK-----ENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAE-A 318 (393)
T ss_dssp HHHTTHH---HHHHHHHHHHHHHHHHHTSCT-----TTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHH-H
T ss_pred hCCcchh---hHHHHHHHHHHHHHHHHHhcc-----CcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHH-H
Confidence 6665543 345777777777888886431 22 33333321110 01237799999864211 1
Q ss_pred cCHHHHHHhhhcCCcEeccCccCC---chhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHH
Q psy16512 408 YGYSEVQNLANLKKIQLRTGCHCN---PGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDV 484 (815)
Q Consensus 408 ~~~~~v~~~l~~~gI~v~~g~~~~---~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi 484 (815)
...+.+.|+-..+..+.|...+ ++....+.+++++.. -..|..++.||||+|.++.++-+
T Consensus 319 --~~~f~~~l~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~r---------------~~~gi~~~liRlSvGlE~~~DLi 381 (393)
T d1n8pa_ 319 --ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAR---------------EASGVFDDLVRISVGIEDTDDLL 381 (393)
T ss_dssp --HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTT---------------TTTSCCTTEEEEECCSSCHHHHH
T ss_pred --HHHHHHhCCcceecccCCCcCceEeCchhhccccCCHHHH---------------HhcCCCcCEEEEEeccCCHHHHH
Confidence 1234555555555555554222 333323333333221 11256678999999987776667
Q ss_pred HHHHHHHHH
Q psy16512 485 KYFLSFLNQ 493 (815)
Q Consensus 485 ~~lv~~L~~ 493 (815)
+.|-++|++
T Consensus 382 ~Dl~~AL~~ 390 (393)
T d1n8pa_ 382 EDIKQALKQ 390 (393)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.67 E-value=6.8e-17 Score=174.93 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=119.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEE-e-cCCCcchhhHHHHhhccceEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIY-L-TDNHTSVLGMRELVKTNQIYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~-~-~~~h~s~~~~~~~~~~~g~v~~~~~~~~~~ 184 (815)
.+++++..++.++..+.+ .+++|+|+++|+..++.++. .++++++ + .+.|+++......++.. ++.. + ++
T Consensus 52 ~~~l~~~~~~~~~~~~~e-~~~~~~~~~~a~~~~l~al~-~~~~vi~~~~~~~~~~~~~~~~l~g~~-~v~~--~---d~ 123 (366)
T d2aeua1 52 AEKVNEYGLKHLGGDEND-KCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAK-YFES--D---KV 123 (366)
T ss_dssp HHHHHHHHHHHHTCCTTE-EEEEESSHHHHHHHHHHHHC-CSEEEEECSSSSCCTHHHHHHHHTTCE-EEEE--S---CH
T ss_pred HHHHHHHHHHHccCCCcc-EEEEeCCHHHHHHHHHHHhC-CCCEEEEecCCCcchhHHHHHHhcCCe-EECC--C---CH
Confidence 456777788888876543 58999999999999999975 4445544 3 36799887766554321 3322 2 34
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCc-cccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC----CC
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSG-TKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM----LD 259 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG-~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~----~d 259 (815)
+++++ +++++|++|++.+++|+++ ...++++|+++|+ ++|+++++|++++.+... ..
T Consensus 124 e~l~~-------~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~-----------~~~~~~i~De~y~~~~~~~~~~~~ 185 (366)
T d2aeua1 124 GEILN-------KIDKDTLVIITGSTMDLKVIELENFKKVINTAK-----------NKEAIVFVDDASGARVRLLFNQPP 185 (366)
T ss_dssp HHHHT-------TCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHH-----------HHTCCEEEECTTHHHHHHHTTCCC
T ss_pred HHHHH-------hcCCCceEEEEEecCCCCcCCHHHHHHHHHHhc-----------cCcEEEEEecCccccccccccCCC
Confidence 44444 4568899999999988754 5678999999999 899999999998754311 11
Q ss_pred CCCCCCcEEEEccccccccCCcceEEEEecccccccC
Q psy16512 260 LKQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLN 296 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~ 296 (815)
....++|++++|+||.++++ ++|+++.++++++.++
T Consensus 186 ~~~~~~di~~~S~sK~~~g~-~~G~i~~~~~~i~~~~ 221 (366)
T d2aeua1 186 ALKLGADLVVTSTDKLMEGP-RGGLLAGKKELVDKIY 221 (366)
T ss_dssp HHHHTCSEEEEETTSSSSSC-SCEEEEEEHHHHHHHH
T ss_pred HhhcCceEEEeccccccccc-ceeEEEecHHHHHHHH
Confidence 12347899999999999855 6899999999887664
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.66 E-value=3.7e-16 Score=171.44 Aligned_cols=330 Identities=11% Similarity=0.022 Sum_probs=189.5
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCc----
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGA---- 133 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~---- 133 (815)
|.|..+..+..+.+.++......+.. + + .+..... ..++|+++++++.. +++. |+.+.++
T Consensus 38 ~~d~~~~~~~~~~V~~a~~~~~~~~~--~-~-~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~--i~~~~~~~~~g 107 (401)
T d7aata_ 38 YRDDNGKPYVLNCVRKAEAMIAAKKM--D-K-EYLPIAG----LADFTRASAELALGENSEAFKSGR--YVTVQGISGTG 107 (401)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTTC--C-C-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTC--EEEEEEEHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHhhCCC--C-C-CCCCCCC----CHHHHHHHHHHHhccCCcccCcCc--eEEeccchHHH
Confidence 34444455556666666554433221 0 1 1222333 77888889887632 2343 5444332
Q ss_pred -hhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchh--hhcchhhhhhhhhhhhhcCCCccEEEEe
Q psy16512 134 -TSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDD--ARNMLNEFKESQENVENMRHSNSLFVYP 208 (815)
Q Consensus 134 -t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~lv~i~ 208 (815)
.+++..++.++. ++|| |+++.+.|+.+......++... .+++..++ ..+.+.+.+.+. ...+++++++++
T Consensus 108 ~~~~~~~~~~~l~-~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~ 182 (401)
T d7aata_ 108 SLRVGANFLQRFF-KFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS----KIPEKSIILLHA 182 (401)
T ss_dssp HHHHHHHHHHHHC-TTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT----TSCTTCEEEEES
T ss_pred HHHHHHHhhHhhc-CCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHh----cCCCceEEEEec
Confidence 245677777787 9999 9999988888877776665444 56665433 233333333221 335679999999
Q ss_pred cccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC------C---CC-CCCCCcEEEEcccccccc
Q psy16512 209 AESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM------L---DL-KQHQPDFISISFYKMFGY 278 (815)
Q Consensus 209 ~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~------~---dl-~~~~~D~vv~S~~K~~g~ 278 (815)
+++||||.+++.+++.++++ .|+++++++|.|.++..-.-. . .. .....-+++.|++|.++
T Consensus 183 ~p~NPTG~~~s~e~~~~l~~--------~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~- 253 (401)
T d7aata_ 183 CAHNPTGVDPRQEQWKELAS--------VVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMG- 253 (401)
T ss_dssp SSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC-
T ss_pred CCCCCccccCCHHHHHHHHH--------HHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccce-
Confidence 99999999999887666655 444999999999887532110 0 00 01122467789999998
Q ss_pred CCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH------HHhhhh
Q psy16512 279 PTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT------MEKKRK 350 (815)
Q Consensus 279 p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~------l~~~~~ 350 (815)
.+| +|++++..+..+.+......... ..+......+.....++...+.. ......
T Consensus 254 ~~G~RiG~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 316 (401)
T d7aata_ 254 LYGERAGAFTVICRDAEEAKRVESQLKI-----------------LIRPMYSNPPMNGARIASLILNTPELRKEWLVEVK 316 (401)
T ss_dssp CGGGCEEEEEEECSSHHHHHHHHHHHHH-----------------HHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred eeccccceeecchHHHHHHHHHHHHHHH-----------------HhhccccccchHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 557 89999998876543221100000 00011112233333333222221 111111
Q ss_pred hH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCcc
Q psy16512 351 SF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCH 429 (815)
Q Consensus 351 ~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~ 429 (815)
.+ +++.+.++.+.+.|+++... ..+..+.+.+ |.++++. ++.+.+.++++++||.+.+|
T Consensus 317 ~~~~~~~~~r~~l~~~L~~~~~~---~~~~~~~~~~-------G~F~~~~--------ls~e~~~~L~~e~gV~~~pg-- 376 (401)
T d7aata_ 317 GMADRIISMRTQLVSNLKKEGSS---HNWQHITDQI-------GMFCFTG--------LKPEQVERLTKEFSIYMTKD-- 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC---SCCHHHHHCC-------SSEEECC--------CCHHHHHHHHHHHCEECCTT--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---CCcceECCCC-------eEEEecC--------CCHHHHHHHHHhCCEEECCC--
Confidence 22 66777788888888876210 0122232322 3333322 12234666778999987543
Q ss_pred CCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHh
Q psy16512 430 CNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 430 ~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~ 496 (815)
+|||+... ++++|+++.++|.++++
T Consensus 377 -----------------------------------------~Ris~a~~-~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 377 -----------------------------------------GRISVAGV-ASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp -----------------------------------------CEEEGGGC-CTTTHHHHHHHHHHHHC
T ss_pred -----------------------------------------cEEEeccC-CHHHHHHHHHHHHHHhC
Confidence 59998643 56789999999999763
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.65 E-value=8e-15 Score=158.82 Aligned_cols=322 Identities=14% Similarity=0.034 Sum_probs=202.5
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc---EEEecCCCcchhhHHHHhhccc-eEEcCchhhh
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS---FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR 182 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd---vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~ 182 (815)
++++++.+++++|++. +++++|+|.|+.+++.++...+|| |+++..+++++......++... ++.++.+...
T Consensus 33 v~~fE~~~~~~~g~k~----ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~~a~~~ai~~~G~~pv~vDi~~~~~~ 108 (371)
T d2fnua1 33 SLLFEEALCEFLGVKH----ALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKNDGNI 108 (371)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSB
T ss_pred HHHHHHHHHHHHCcCe----EEEEecHHHHHHHHHHHhcccCCCCCeeecccccccccceeeeccCcccccccccccccc
Confidence 8899999999999874 788899999999999998765554 9999989988876666554444 5555555544
Q ss_pred cchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCC-
Q psy16512 183 NMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLK- 261 (815)
Q Consensus 183 ~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~- 261 (815)
+...+++ .++++|++|+++|. .|...++++|.++|+ ++++++|.|++|+.|...-.-.
T Consensus 109 ~~~~~~~-------~~~~~t~avi~vh~---~G~~~~~~~i~~~~~-----------~~~i~lIEDaaqa~Ga~~~~~~~ 167 (371)
T d2fnua1 109 DELALEK-------LINERTKAIVSVDY---AGKSVEVESVQKLCK-----------KHSLSFLSDSSHALGSEYQNKKV 167 (371)
T ss_dssp CGGGSGG-------GCCTTEEEEEEECG---GGCCCCHHHHHHHHH-----------HHTCEEEEECTTCTTCEETTEET
T ss_pred cchhhhh-------hccchhhccccccc---ccccccccccccccc-----------ccchhhccchhhccCceeccccC
Confidence 4444443 45678999998864 499999999999999 8999999999999987532111
Q ss_pred CCCCcEEEEccc--cccccCCcceEEEEec-ccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHH
Q psy16512 262 QHQPDFISISFY--KMFGYPTGLGALIVKQ-KSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISL 338 (815)
Q Consensus 262 ~~~~D~vv~S~~--K~~g~p~G~G~l~~~~-~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al 338 (815)
....|+.++||| |.+. ..+-|+++.++ +..++++..... +.... ....+ .....|...-+.-+.+
T Consensus 168 G~~g~~~~~Sf~~~K~l~-~g~GG~i~t~~~~~~~~~~~~~~~-g~~~~--~~~~~--------~~~~~G~n~r~sel~A 235 (371)
T d2fnua1 168 GGFALASVFSFHAIKPIT-TAEGGAVVTNDSELHEKMKLFRSH-GMLKK--DFFEG--------EVKSIGHNFRLNEIQS 235 (371)
T ss_dssp TSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBT-TEEES--SSSCE--------EESSCCCBCCCCHHHH
T ss_pred Cccccccccccccccccc-cccceEEEeechhhhhhccccccc-ccccc--ccccc--------ccccccccccccchhh
Confidence 113577788875 7776 32346666665 344444322211 21110 00000 0111222222222333
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhh
Q psy16512 339 KYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLAN 418 (815)
Q Consensus 339 ~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~ 418 (815)
..++..+.++....++.++++.++.+.|+.. +++.+..+... .......+.+.+..... ....++.+.|.
T Consensus 236 aigl~qL~~l~~~~~~R~~~~~~y~~~l~~~------~~~~~~~~~~~--~~~~~~~~~i~~~~~~~--~~r~~~~~~L~ 305 (371)
T d2fnua1 236 ALGLSQLKKAPFLMQKREEAALTYDRIFKDN------PYFTPLHPLLK--DKSSNHLYPILMHQKFF--TCKKLILESLH 305 (371)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTC------SSEEESGGGCS--SCCCCSCEEEEECGGGG--GGHHHHHHHHH
T ss_pred hhhhhhhhhccchhhhhhhhhhhhccccccc------ccccccccccc--cccccccccccccccch--hHHHHHHHHHH
Confidence 3455666665444577777888888888887 67887654321 11222334444433211 12346889999
Q ss_pred cCCcEeccCccCCchhhhhhc----C---CCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHH
Q psy16512 419 LKKIQLRTGCHCNPGSCQRFL----G---LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFL 491 (815)
Q Consensus 419 ~~gI~v~~g~~~~~~~~~~~~----g---~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L 491 (815)
++||.++.... |-..+..+ . ++..+. .....+.+.++..-|.+|++++++.|
T Consensus 306 ~~gI~~~~~y~--pl~~~~~~~~~~~~~~~pnae~-------------------~~~~~l~LP~~~~lt~~di~~I~~~i 364 (371)
T d2fnua1 306 KRGILAQVHYK--PIYQYQLYQQLFNTAPLKSAED-------------------FYHAEISLPCHANLNLESVQNIAHSV 364 (371)
T ss_dssp HTTEECBCCCC--CGGGSHHHHHHHCCCCCHHHHH-------------------HHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred HCCCCcceeCc--ccccCHHHHhccccCCCHHHHH-------------------HHhCeEECcCCCCCCHHHHHHHHHHH
Confidence 99999876532 21111110 1 111111 11367999999888999999999999
Q ss_pred HHHHh
Q psy16512 492 NQYFL 496 (815)
Q Consensus 492 ~~~~~ 496 (815)
.+++.
T Consensus 365 ~~~~~ 369 (371)
T d2fnua1 365 LKTFE 369 (371)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.65 E-value=6.3e-15 Score=159.86 Aligned_cols=321 Identities=13% Similarity=0.074 Sum_probs=194.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhhcc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDARNM 184 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~~~ 184 (815)
++++++.+++++|.+. +++++++|.|+.+++.++..++|| |+++..++++.......++... ++.++++.....
T Consensus 23 ~~~fE~~~~~~~~~~~----~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a~~~~~~~~g~~pv~~Di~~~~~~~~ 98 (374)
T d1o69a_ 23 VNRFEQSVKDYSKSEN----ALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDV 98 (374)
T ss_dssp HHHHHHHHHHHHCCSE----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCH
T ss_pred HHHHHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHhhHHHHhhccceeEeccccccccccc
Confidence 8999999999999864 789999999999999999778999 9999999998877666665444 455553322111
Q ss_pred hhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC-
Q psy16512 185 LNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH- 263 (815)
Q Consensus 185 ~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~- 263 (815)
..... ......++|++|++.|.. |...++++|.++|+ ++|++||.|+||+.|...- -...
T Consensus 99 ~~~~~----~~~~~~~~~~aii~~~~~---G~~~d~~~i~~~~~-----------~~~i~vIED~a~a~g~~~~-~~~~G 159 (374)
T d1o69a_ 99 DLLKL----AIKECEKKPKALILTHLY---GNAAKMDEIVEICK-----------ENDIVLIEDAAEALGSFYK-NKALG 159 (374)
T ss_dssp HHHHH----HHHHCSSCCCEEEEECGG---GCCCCHHHHHHHHH-----------HTTCEEEEECTTCTTCEET-TEETT
T ss_pred ccccc----cchhcccccccccccccc---cchhhhHHHHHHhh-----------ccCcchhhhhhhhhcceEC-CeecC
Confidence 11111 122456779999988664 99999999999999 8999999999999987421 1111
Q ss_pred -CCcEEEEccc--cccccCCcceEEEEecc-cccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHH
Q psy16512 264 -QPDFISISFY--KMFGYPTGLGALIVKQK-SAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLK 339 (815)
Q Consensus 264 -~~D~vv~S~~--K~~g~p~G~G~l~~~~~-~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~ 339 (815)
-.|+.++||| |.++.. |-|+++.+++ .+++++.....+.. ..+ .......|.-..+.-+.+.
T Consensus 160 ~~gd~~~fSf~~~K~l~tg-eGG~i~tnn~~~~~~~~~~~~~g~~-------~~~------~~~~~~~G~N~rm~ei~Aa 225 (374)
T d1o69a_ 160 TFGEFGVYSYNGNKIITTS-GGGMLIGKNKEKIEKARFYSTQARE-------NCL------HYEHLDYGYNYRLSNVLGA 225 (374)
T ss_dssp SSSSEEEEECCTTSSSCCS-SCEEEEESCHHHHHHHHHHTBTCCC-------SSS------SCCCSSCCCBCBCCHHHHH
T ss_pred CCCceEEEeccCccccccc-cceeehhhhHHHHHhhccccccccc-------ccc------ccccccCCccccccchhhh
Confidence 2599999998 777633 4577777643 33333222111110 000 0011122332223333333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC--------------
Q psy16512 340 YGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG-------------- 405 (815)
Q Consensus 340 ~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~-------------- 405 (815)
.++..+.++....++.+++++++.+.|.+.. . .+..+.. ......+.+.+...+.
T Consensus 226 ig~~qL~~l~~~i~~r~~i~~~y~~~L~~~~------~-~~~~~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (374)
T d1o69a_ 226 IGVAQMEVLEQRVLKKREIYEWYKEFLGEYF------S-FLDELEN----SRSNRWLSTALINFDKNELNACQKDINISQ 294 (374)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTTE------E-CCCCCTT----EECCCSSEEEEESCCGGGSCCCCEEEECCC
T ss_pred hhHHHHhhhhhhcchhHHHHHHHHhhccccc------c-ccccccC----CCCChhheeeeeccccccccccccccccch
Confidence 4555555554444677778888888887651 1 1111110 0001111111111000
Q ss_pred ----CccCHHHHHHhhhcCCcEeccCccCCchhhhhhcC------CCHHHHHHHhhcCCccCCcccccCCCCceEEEEec
Q psy16512 406 ----TYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLG------LSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISY 475 (815)
Q Consensus 406 ----~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g------~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~ 475 (815)
..-....+.+.|.++||.++.... +.+.+..+. ++..+. .....|.+.+
T Consensus 295 ~~~~~~~~r~~l~~~L~~~gI~~r~~y~--pl~~~~~~~~~~~~~~pna~~-------------------~~~~~i~LP~ 353 (374)
T d1o69a_ 295 KNITLHPKISKLIEDLKNKQIETRPLWK--AMHTQEVFKGAKAYLNGNSEL-------------------FFQKGICLPS 353 (374)
T ss_dssp CCCCCCHHHHHHHHHHHHTTCCCBCCCC--CGGGCGGGTTCEEEECSHHHH-------------------HHHHEEEECC
T ss_pred hhccchhhHHHHHHHHHHCCCCEEEeCc--chhhChhhhcCCCCCCHHHHH-------------------HHhCEEECcC
Confidence 001245688999999999887532 222222111 111111 1135799999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy16512 476 GHASNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 476 g~~~t~edi~~lv~~L~~~~~ 496 (815)
+...|++|++++++.|.++++
T Consensus 354 ~~~lt~~di~~I~~~I~~~lk 374 (374)
T d1o69a_ 354 GTAMSKDDVYEISKLILKSIK 374 (374)
T ss_dssp CTTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHC
Confidence 998999999999999999764
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=2.5e-15 Score=159.23 Aligned_cols=336 Identities=13% Similarity=0.115 Sum_probs=218.9
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCCh-hhhhhhhhhhHH-HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGN-SVLSDFCVSEID-QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~-~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
....++.+.+++..-+... ..+.|+.. +.--+. ..+++ -+.++..++||+...+ +-..+++.|+..++.++.
T Consensus 35 EN~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~-iD~iE~la~~ra~~lF~a~~an---Vqp~SGs~AN~av~~All- 109 (416)
T d1dfoa_ 35 ENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEY-VDIVEQLAIDRAKELFGADYAN---VQPHSGSQANFAVYTALL- 109 (416)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHH-HHHHHHHHHHHHHHHHTCSEEE---CCCSSHHHHHHHHHHHHC-
T ss_pred cccCCHHHHHHhcCcccCcccCCCCCCcccCCChh-HHHHHHHHHHHHHHHhCCCcce---eecccCccHHHHHHHHhc-
Confidence 4456778888776655432 23455543 221222 12233 4567778899987643 555777789999999998
Q ss_pred CCCc-EEEecCCCcchhh---HHHHhhc-cc--eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC
Q psy16512 147 NEGS-FIYLTDNHTSVLG---MRELVKT-NQ--IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP 219 (815)
Q Consensus 147 ~~gd-vv~~~~~h~s~~~---~~~~~~~-~g--~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~ 219 (815)
+||| |+.....|...+. ....... .. .+.++.++.+|.+.+++.+. ..++++|++.. +......|
T Consensus 110 ~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~------~~kPklIi~G~--S~y~r~~d 181 (416)
T d1dfoa_ 110 EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAK------EHKPKMIIGGF--SAYSGVVD 181 (416)
T ss_dssp CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHH------HHCCSEEEEEC--SSCCSCCC
T ss_pred CCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHH------HhccceEEecc--cccccccC
Confidence 9999 6666655444221 1111111 11 34556666788888876443 35689999875 44568899
Q ss_pred hHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEec---cc
Q psy16512 220 LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQ---KS 291 (815)
Q Consensus 220 l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~---~~ 291 (815)
.+++.++|+ +.|+++++|.+|..|. .+-++. .+|++++|.||.|.+|.| |+++.++ +.
T Consensus 182 ~~~~reiad-----------~vga~l~~D~aH~~GLIa~g~~~sP~~--~aDvvt~tThKtlrGPrg-giI~~~~~~~~~ 247 (416)
T d1dfoa_ 182 WAKMREIAD-----------SIGAYLFVDMAHVAGLVAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGSEEL 247 (416)
T ss_dssp HHHHHHHHH-----------HTTCEEEEECTTTHHHHHHTSSCCCTT--TSSEEEEESSSTTCCCSC-EEEEESSCCHHH
T ss_pred HHHHHHHHH-----------hcCceEEcchhhhhcceeccccCCccc--ccceeeeehhhcccCCCc-eEEEeccchHhH
Confidence 999999999 8999999999998753 333333 369999999999998975 7777763 33
Q ss_pred ccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhhH-HHHHHHHHHHHHHHHhc
Q psy16512 292 AHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKSF-TNAFELSQYTYFYFKQL 369 (815)
Q Consensus 292 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~~-~~~~~l~~~l~~~L~~l 369 (815)
.+++....+-+. .|.+....++|...++.... ..+..+ +++.++++.|.+.|.+.
T Consensus 248 ~~~i~~avfPg~-----------------------qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~~ 304 (416)
T d1dfoa_ 248 YKKLNSAVFPGG-----------------------QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLER 304 (416)
T ss_dssp HHHHHHHHTTTT-----------------------CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCccc-----------------------ccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334432222211 23456677888777777633 233444 88999999999999987
Q ss_pred cccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHH
Q psy16512 370 SYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFH 449 (815)
Q Consensus 370 ~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~ 449 (815)
|++++.... ..+++.+.+.... ++...+.+.|.+.||.+..-.....+.
T Consensus 305 -------G~~iv~ggT------dnHlvlvdl~~~~---~~G~~a~~~Le~~gI~~Nkn~iP~d~~--------------- 353 (416)
T d1dfoa_ 305 -------GYKVVSGGT------DNHLFLVDLVDKN---LTGKEADAALGRANITVNKNSVPNDPK--------------- 353 (416)
T ss_dssp -------TCEEGGGSC------SSSEEEEECGGGT---CCHHHHHHHHHHTTEECEECCCTTCSS---------------
T ss_pred -------CcccccCCC------CCceeEEEecccC---CCHHHHHHHHHHcCeEEeCCcCCCCCC---------------
Confidence 899985321 2577777775321 344568999999999875322111000
Q ss_pred hhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcCc
Q psy16512 450 FQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 450 ~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~~ 500 (815)
....++.|||+.... -.++|++++.+.|.+++.+..+
T Consensus 354 --------------~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~~ 394 (416)
T d1dfoa_ 354 --------------SPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSIND 394 (416)
T ss_dssp --------------CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred --------------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcCCc
Confidence 011246799986543 3679999999999998875543
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.63 E-value=4.5e-15 Score=161.39 Aligned_cols=334 Identities=8% Similarity=-0.002 Sum_probs=199.9
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCch-hhhc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVD-DARN 183 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~-~~~~ 183 (815)
++++++++++++|.+. +++++++|.|+.+++.++..++|| |+++..+++++......++... ++++++. ..++
T Consensus 36 v~~fE~~~a~~~g~~~----~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ai~~~g~~p~~~d~~~~~~~~d 111 (384)
T d1b9ha_ 36 VNSFEREFAAHHGAAH----ALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLD 111 (384)
T ss_dssp HHHHHHHHHHHTTCSE----EEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBC
T ss_pred HHHHHHHHHHHHCcCe----EEEeCCHHHHHHHHHHHcCCCCCCEEEEeccccccccccccccccccccccccccccccc
Confidence 8899999999999875 788999999999999998778999 9999999988877666555444 4455543 3556
Q ss_pred chhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCCCCCC
Q psy16512 184 MLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLDLKQH 263 (815)
Q Consensus 184 ~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~dl~~~ 263 (815)
++.+++ .++++|++|++++ ..|...++++|.++|+ ++++++|.|++|+.|... +-...
T Consensus 112 ~~~~~~-------~i~~~tk~i~~~~---~~g~~~d~~~i~~~~~-----------~~~i~lieD~a~a~ga~~-~g~~~ 169 (384)
T d1b9ha_ 112 PEAVAA-------AVTPRTKVIMPVH---MAGLMADMDALAKISA-----------DTGVPLLQDAAHAHGARW-QGKRV 169 (384)
T ss_dssp HHHHHH-------HCCTTEEEECCBC---GGGCCCCHHHHHHHHH-----------HHTCCBCEECTTCTTCEE-TTEEG
T ss_pred hhhhcc-------ccccccccccccc---ccccccccccchhhhh-----------hhhhhhhhhhceeccccc-CCEec
Confidence 666655 4468899987764 5599999999999999 899999999999998742 21111
Q ss_pred --CCcEEEEcc--ccccccCCcceEEEEec-ccccccCcccc-cCceEEEEecCCcccccccCccccccCCCCChhHHHH
Q psy16512 264 --QPDFISISF--YKMFGYPTGLGALIVKQ-KSAHVLNKTFY-GGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIIS 337 (815)
Q Consensus 264 --~~D~vv~S~--~K~~g~p~G~G~l~~~~-~~~~~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 337 (815)
..|+.++|| +|.++.. +-|+++.++ ++.+.++.... +.+... ....+. ....|...-+.-+.
T Consensus 170 g~~g~~~~~Sf~~~K~i~~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~---~~~~~~--------~~~~G~n~rms~l~ 237 (384)
T d1b9ha_ 170 GELDSIATFSFQNGKLMTAG-EGGAVVFPDGETEKYETAFLRHSCGRPR---DDRRYF--------HKIAGSNMRLNEFS 237 (384)
T ss_dssp GGSSSCEEEECCTTSSSCSS-SCEEEEECTTCHHHHHHHHHHTBTTCCT---TCSSCC--------CCSCCCBCBCBHHH
T ss_pred Ccccccceeccccccccccc-ccchhhhhhHHHHHHHHHHHhcCCCCcc---cccccc--------ccccccccccccch
Confidence 246667666 5777633 246666664 44444432221 111100 000000 00112111111112
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhh
Q psy16512 338 LKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLA 417 (815)
Q Consensus 338 l~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l 417 (815)
+..++..+.++...+++.+++++++.+.|+++ +++......... .........|.++.... -..+.+.+.|
T Consensus 238 Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~~------~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~Rd~l~~~L 308 (384)
T d1b9ha_ 238 ASVLRAQLARLDEQIAVRDERWTLLSRLLGAI------DGVVPQGGDVRA-DRNSHYMAMFRIPGLTE--ERRNALVDRL 308 (384)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTS------TTCEECCCCTTC-CBCCCSEEEEECTTCCH--HHHHHHHHHH
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhhhhhcc------cccccccccccc-cccccccccceeccccc--ccHHHHHHHH
Confidence 22344555555444577788889999999987 566554332100 01112344455443221 1234588999
Q ss_pred hcCCcEeccCccCCchhhhhh---cCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCC-HHHHHHHHHHHHH
Q psy16512 418 NLKKIQLRTGCHCNPGSCQRF---LGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASN-WDDVKYFLSFLNQ 493 (815)
Q Consensus 418 ~~~gI~v~~g~~~~~~~~~~~---~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t-~edi~~lv~~L~~ 493 (815)
.++||.++.. +.+-+.+.+ +|.........- ......+-.....|++.++..-| ++|+++++++|++
T Consensus 309 ~~~GI~~~~~--y~plh~~~~~~~~~~~~~~~~~~~-------~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~ 379 (384)
T d1b9ha_ 309 VEAGLPAFAA--FRAIYRTDAFWELGAPDESVDAIA-------RRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 379 (384)
T ss_dssp HHTTCCEEEC--CCCGGGSHHHHHSSCCSSCHHHHH-------HTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred HHCCCCeeee--CcchhcCHHHHhcCCCcccccccc-------cCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence 9999998764 333222211 221110000000 00000011113579999887766 6899999999999
Q ss_pred HHh
Q psy16512 494 YFL 496 (815)
Q Consensus 494 ~~~ 496 (815)
++.
T Consensus 380 ~l~ 382 (384)
T d1b9ha_ 380 AVA 382 (384)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.62 E-value=7.4e-15 Score=154.81 Aligned_cols=336 Identities=12% Similarity=0.121 Sum_probs=220.9
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChh-hhhhhhhhhHH-HHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNS-VLSDFCVSEID-QMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF 146 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~-~~~~~~~~~~~-~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~ 146 (815)
....++.+.+++...+... ..+.|...+ .--+. ..+++ -+.++.+++||+...+ +-..+++.|+..++.++.
T Consensus 32 EN~~S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~-id~iE~la~~ra~~lF~a~~an---Vqp~SGs~An~av~~all- 106 (405)
T d1kl1a_ 32 ENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEY-VDIVEELARERAKQLFGAEHAN---VQPHSGAQANMAVYFTVL- 106 (405)
T ss_dssp CCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHH-HHHHHHHHHHHHHHHHCCSEEE---CCCSSHHHHHHHHHHHHC-
T ss_pred CCcCCHHHHHHhcCcccCcCcCCCCCccccCCchh-HHHHHHHHHHHHHHHhCCCcce---eeccCchHHHHHHHHHhc-
Confidence 4456788888776655432 234565442 22222 12233 4667888999987543 555677789999999998
Q ss_pred CCCc-EEEecC---CCcchhhHHHHhhc-cc--eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcccc
Q psy16512 147 NEGS-FIYLTD---NHTSVLGMRELVKT-NQ--IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKY 218 (815)
Q Consensus 147 ~~gd-vv~~~~---~h~s~~~~~~~~~~-~g--~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~ 218 (815)
+||| |+.... .|-+.-........ .. .++++++ ..+|.+++++.+. ..++++|++..-. .-...
T Consensus 107 ~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~------~~kPklIi~G~S~--y~r~~ 178 (405)
T d1kl1a_ 107 EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKAR------LHRPKLIVAAASA--YPRII 178 (405)
T ss_dssp CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEECCSS--CCSCC
T ss_pred CCCCEEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHH------hhCcceEEecccc--ccccc
Confidence 9999 555543 34332211111111 11 3456654 4688888876443 3468999986544 44677
Q ss_pred ChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEEeccccc
Q psy16512 219 PLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIVKQKSAH 293 (815)
Q Consensus 219 ~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~ 293 (815)
|.+++.++|+ +.|+++++|.+|.+|. .+-++. .+|++++|.||.|.+|.| |+++.+++..+
T Consensus 179 d~~~~reIad-----------~vga~l~~D~aH~~GLIa~g~~~~P~~--~aDvvt~tThKtlrGPrg-g~I~~~~~~~~ 244 (405)
T d1kl1a_ 179 DFAKFREIAD-----------EVGAYLMVDMAHIAGLVAAGLHPNPVP--YAHFVTTTTHKTLRGPRG-GMILCQEQFAK 244 (405)
T ss_dssp CHHHHHHHHH-----------HHTCEEEEECTTTHHHHHTTSSCCSTT--TCSEEEEESSSTTCCCSC-EEEEECHHHHH
T ss_pred ChHHHHHHHh-----------hhCCEEecchhhHhhhhhhhhcCChhh--hhhheeccccccccCCCC-ceEEecchhHH
Confidence 9999999999 8899999999998653 333342 479999999999998986 78888877766
Q ss_pred ccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHH-hhhhhH-HHHHHHHHHHHHHHHhccc
Q psy16512 294 VLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTME-KKRKSF-TNAFELSQYTYFYFKQLSY 371 (815)
Q Consensus 294 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~-~~~~~~-~~~~~l~~~l~~~L~~l~~ 371 (815)
++....|-+. -|.+....++|+..++.... ..+..+ +++.+.++.|.+.|.+.
T Consensus 245 ~i~~avfPg~-----------------------qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~~-- 299 (405)
T d1kl1a_ 245 QIDKAIFPGI-----------------------QGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE-- 299 (405)
T ss_dssp HHHHHHTTTT-----------------------CSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHhhhCccc-----------------------ccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 6644333221 24566788888888877643 333445 88999999999999987
Q ss_pred cCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhh
Q psy16512 372 SNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQ 451 (815)
Q Consensus 372 ~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~ 451 (815)
|+.+++.. ...+++.+.+.... ++...+.+.|++.||.+..-.....+
T Consensus 300 -----G~~vv~gg------Td~H~vlvdl~~~~---~~g~~ae~~Le~agI~~Nkn~iP~d~------------------ 347 (405)
T d1kl1a_ 300 -----GFTLVSGG------TDNHLLLVDLRPQQ---LTGKTAEKVLDEVGITVNKNTIPYDP------------------ 347 (405)
T ss_dssp -----TCEEGGGS------CSSSEEEEECGGGT---CCHHHHHHHHHHHTEECEECCCTTCS------------------
T ss_pred -----CceeecCC------CccceeeccccccC---CcHHHHHHHHHHcCeEEcCCcCCCCC------------------
Confidence 88998642 23577777764322 34456788899999987532211100
Q ss_pred cCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHhhcCc
Q psy16512 452 QGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFLQQAD 500 (815)
Q Consensus 452 ~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~~~~~ 500 (815)
-....++.|||..... ..++|+.++.+.|.+++.+..+
T Consensus 348 -----------~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~~~ 389 (405)
T d1kl1a_ 348 -----------ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVGS 389 (405)
T ss_dssp -----------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTTC
T ss_pred -----------CCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 0011136799986543 3679999999999998865443
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.61 E-value=3e-15 Score=164.69 Aligned_cols=335 Identities=13% Similarity=0.091 Sum_probs=190.9
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchhh
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATSA 136 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~a 136 (815)
+|.|..+..+..+.+.++... +......+ + .+..... ..++|+++++++.- +.+...++.|++.+.+
T Consensus 39 ~~~d~~g~~~~~~~V~~a~~~-~~~~~~~~-~-~Y~p~~G----~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (412)
T d1ajsa_ 39 AYRTDDCQPWVLPVVRKVEQR-IANNSSLN-H-EYLPILG----LAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA 111 (412)
T ss_dssp CCCCTTSCCCCCHHHHHHHHH-HHTCTTCC-C-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CCcCCCCCCCCcHHHHHHHHH-HHhCCCcC-C-CCCCCCC----CHHHHHHHHHHHhccCCcccccccceeecccchhhH
Confidence 355555555666666665433 32211111 1 1333344 77889999887632 2343335667777666
Q ss_pred HHHHHhhh-------ccCCCc-EEEecCCCcchhhHHHHhhccc--eEEcCchh--hhcchhhhhhhhhhhhhcCCCccE
Q psy16512 137 IKTVSEYF-------EFNEGS-FIYLTDNHTSVLGMRELVKTNQ--IYSFSVDD--ARNMLNEFKESQENVENMRHSNSL 204 (815)
Q Consensus 137 l~~~~~al-------~~~~gd-vv~~~~~h~s~~~~~~~~~~~g--~v~~~~~~--~~~~~~~~~~l~~~~~~~~~~t~l 204 (815)
+..+..++ . ++|| |+++++.|+.+..+.+.++... +.+...++ ..+.+..++.+ ....+++++
T Consensus 112 ~~~~~~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~ 186 (412)
T d1ajsa_ 112 LRIGAEFLARWYNGTN-NKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDL----ENAPEFSIF 186 (412)
T ss_dssp HHHHHHHHHHHSSSSS-CCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHH----HHSCTTCEE
T ss_pred HHHHHHHHHHHhhhcC-CCCCEEEEeCCcchhhHHHHHHcCCeEEEeecccccccccccHHHHHHHH----HhccCCcEE
Confidence 65555443 4 8999 9999999988877777765443 22333222 23333333322 134577999
Q ss_pred EEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC----------CCCCCCCCcEEEEcccc
Q psy16512 205 FVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM----------LDLKQHQPDFISISFYK 274 (815)
Q Consensus 205 v~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~----------~dl~~~~~D~vv~S~~K 274 (815)
++++++|||||.+++.+++.++++ .|++|+++++.|.++..-... .........+++.|++|
T Consensus 187 il~~~P~NPTG~v~s~e~~~~i~~--------la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk 258 (412)
T d1ajsa_ 187 VLHACAHNPTGTDPTPEQWKQIAS--------VMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSK 258 (412)
T ss_dssp EEESSSCTTTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTT
T ss_pred EEecCCCCCcCCCCCHHHHHHHHH--------HHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccc
Confidence 999999999999999777655555 344899999999987532110 00011234577889999
Q ss_pred ccccCCc--ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH------HH
Q psy16512 275 MFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT------ME 346 (815)
Q Consensus 275 ~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~------l~ 346 (815)
.++.| | +|++++.....+.+......... ..+-...+++..+..++...+.. +.
T Consensus 259 ~~~~~-G~R~G~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 259 NFGLY-NERVGNLTVVAKEPDSILRVLSQMQK-----------------IVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp TSCCG-GGCEEEEEEECSSHHHHHHHHHHHHH-----------------HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred cccCC-CCCccccccchhHHHHHHHHHHHHHH-----------------HhhccccccchHHHHHHHHHhcCHHHHHHHH
Confidence 98844 6 89999987765433211100000 00111223333444443333321 11
Q ss_pred hhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEec
Q psy16512 347 KKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLR 425 (815)
Q Consensus 347 ~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~ 425 (815)
..-..+ +++.+.++.+.+.|+++... ..+..+.+. ++++.+ .+ ++..++.+++.++||.+.
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~---~~~~~i~~~--------~G~F~~--~~-----ls~~~v~~L~~e~gV~~v 382 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTP---GTWNHITDQ--------IGMFSF--TG-----LNPKQVEYLINQKHIYLL 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS---SCCHHHHHC--------CSSEEE--CC-----CCHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---CCeeeecCC--------CeEEEe--cC-----CCHHHHHHHHHhCCEEEe
Confidence 111122 66777788888888876210 012222222 343332 22 223457777899999875
Q ss_pred cCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 426 TGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 426 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+| + ||++.. .++++|++++++|++++..
T Consensus 383 pg-----------------------------------------~--Ri~~ag-~~~~~i~~~a~aI~~av~~ 410 (412)
T d1ajsa_ 383 PS-----------------------------------------G--RINMCG-LTTKNLDYVATSIHEAVTK 410 (412)
T ss_dssp TT-----------------------------------------S--EEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred CC-----------------------------------------C--eEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 43 2 888753 3568899999999998754
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.1e-15 Score=161.89 Aligned_cols=332 Identities=11% Similarity=0.058 Sum_probs=189.5
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchhhH
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATSAI 137 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~al 137 (815)
|.|..+..+.++.+.+++.+...+.. .+ .+..... +.++|+.+++++.- .++...++.|.+++.++
T Consensus 36 ~~d~~g~~p~~~~V~~A~~~~~~~~~---~~-~Y~p~~G----~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (396)
T d2q7wa1 36 YKDETGKTPVLTSVKKAEQYLLENET---TK-NYLGIDG----IPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL 107 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHCC---CC-CCCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHhhCCC---CC-CCCCCcC----CHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence 44455555666777777655443321 11 1222334 77888999887631 12322245566666666
Q ss_pred HHHHhhhc-cCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhh--cchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 138 KTVSEYFE-FNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR--NMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 138 ~~~~~al~-~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
.+++..+. ..+|| |+++.+.|+.+..+...++... .++...++.. +.....+. .....++++++++++++|
T Consensus 108 ~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~P~N 183 (396)
T d2q7wa1 108 RVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINS----LNEAQAGDVVLFHGCCHN 183 (396)
T ss_dssp HHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHH----HTTCCTTCEEEEECSSCT
T ss_pred HHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHH----HHHhccCcEEEEecCCcC
Confidence 55544332 27898 8899988888877766665444 5555444322 22222221 123456789999999999
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC----C-----CCCCCCCcEEEEccccccccCCc--
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM----L-----DLKQHQPDFISISFYKMFGYPTG-- 281 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~----~-----dl~~~~~D~vv~S~~K~~g~p~G-- 281 (815)
|||.+++.+++.++++ .|+++++++|.|.++..-... . ........+++.|++|.|+ .+|
T Consensus 184 PTG~~~s~e~~~~l~~--------la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R 254 (396)
T d2q7wa1 184 PTGIDPTLEQWQTLAQ--------LSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG-LYNER 254 (396)
T ss_dssp TTCCCCCHHHHHHHHH--------HHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT-CGGGC
T ss_pred CcCeecCHHHHHHHHH--------HHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc-ccCCC
Confidence 9999999887666555 344999999999987532110 0 0001234577789999998 447
Q ss_pred ceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH------HHhhhhhH-HH
Q psy16512 282 LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT------MEKKRKSF-TN 354 (815)
Q Consensus 282 ~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~------l~~~~~~~-~~ 354 (815)
+|++++....++.+........ ...+....+++.....++...+.. ..+.-..+ ++
T Consensus 255 ~G~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (396)
T d2q7wa1 255 VGACTLVAADSETVDRAFSQMK-----------------AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR 317 (396)
T ss_dssp CEEEEEECSSHHHHHHHHHHHH-----------------HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred ccccccchhHHHHHHHhhhhhh-----------------hhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8999998876653321110000 001112234444444444333321 11111112 77
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
.++.++.+.+.|+++.-. ..+..+.+.+ |.++++. ++...+.+++.++||.+.+|
T Consensus 318 ~~~~r~~l~~~L~~~~~~---~~~~~~~~~~-------G~F~~~~--------l~~e~~~~L~~e~gV~~~~g------- 372 (396)
T d2q7wa1 318 IQRMRQLFVNTLQEKGAN---RDFSFIIKQN-------GMFSFSG--------LTKEQVLRLREEFGVYAVAS------- 372 (396)
T ss_dssp HHHHHHHHHHHHHHTTCC---SCCTHHHHCC-------SSEEECC--------CCHHHHHHHHHHHCEECCTT-------
T ss_pred HHHHHHHHHHHHHHhCCC---CCcceecCCC-------eEEEeeC--------CCHHHHHHHHHhCCEEECCC-------
Confidence 788888899999886100 0122222221 3333322 12234777778899987532
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
+ |||+... ++++|++++++|.+++
T Consensus 373 ----------------------------------~--Ri~~a~l-~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 373 ----------------------------------G--RVNVAGM-TPDNMAPLCEAIVAVL 396 (396)
T ss_dssp ----------------------------------C--EEEGGGC-CTTTHHHHHHHHHHHC
T ss_pred ----------------------------------C--EEEecCC-CHHHHHHHHHHHHHhC
Confidence 2 8988643 4678999999998863
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.54 E-value=1e-13 Score=148.98 Aligned_cols=334 Identities=10% Similarity=0.075 Sum_probs=215.3
Q ss_pred ccccchhhHHHHHHHHhhc-cccCCCChh-hhhhhhhhhHH-HHHHHHHhHcCCCCCce-eEEecCCchhhHHHHHhhhc
Q psy16512 70 AGVYSQSQMNQTIEQLKEN-IFSHPHGNS-VLSDFCVSEID-QMRTKILQYFNTDSDHY-SVIFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~~-~~~np~s~~-~~~~~~~~~~~-~~r~~la~~~g~~~~~~-~iv~t~g~t~al~~~~~al~ 145 (815)
....++.+.+++..-+... ..+.|...+ .--+. ..+++ -+.++.+++||++++.+ .-+=..+++.|+.++..++.
T Consensus 40 EN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~-iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~all 118 (470)
T d1rv3a_ 40 ENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEH-IDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV 118 (470)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHH-HHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT
T ss_pred CCcCCHHHHHHhcchhcccccCCCCCccccCCchh-HHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHhc
Confidence 4456788888776655532 234555442 22222 12233 45677789999986542 23555778889999999999
Q ss_pred cCCCc-EEEecC---CCcchhhHH-----HH-hhccc--eEEcCch-hhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 146 FNEGS-FIYLTD---NHTSVLGMR-----EL-VKTNQ--IYSFSVD-DARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 146 ~~~gd-vv~~~~---~h~s~~~~~-----~~-~~~~g--~v~~~~~-~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+||| |+.... .|.+.-... .. ..... .++++++ +.+|.+.+++... ..++++|++-.-.
T Consensus 119 -~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~------~~kPklIi~G~S~- 190 (470)
T d1rv3a_ 119 -EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENAR------LFHPKLIIAGTSC- 190 (470)
T ss_dssp -CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHH------HHCCSEEEECCSS-
T ss_pred -CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHH------hhCcceEeechhh-
Confidence 9999 554443 343321000 00 00011 4556654 5788888876433 3468999986544
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEE
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIV 287 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~ 287 (815)
.-..+|.+++.++|+ +.|+++++|.+|.+|. .+-++. .+|++++|.||.|.+|.| |+++.
T Consensus 191 -y~r~~d~~~~reIad-----------~vga~l~~D~aH~aGLIA~g~~~sPl~--~aDvvt~tTHKtlrGPrg-GiI~~ 255 (470)
T d1rv3a_ 191 -YSRNLDYGRLRKIAD-----------ENGAYLMADMAHISGLVVAGVVPSPFE--HCHVVTTTTHKTLRGCRA-GMIFY 255 (470)
T ss_dssp -CCSCCCHHHHHHHHH-----------HTTCEEEEECTTTHHHHHHTSSCCGGG--TCSEEEEESSGGGCCCSC-EEEEE
T ss_pred -ccccCCHHHHHHHHh-----------ccCCeEEecchhhhhhccccccCChhh--eeeeeeeehhhhccCCcc-eEEEE
Confidence 346789999999999 8899999999998753 333342 369999999999988986 88887
Q ss_pred ecccc---------------cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhh
Q psy16512 288 KQKSA---------------HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKS 351 (815)
Q Consensus 288 ~~~~~---------------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~ 351 (815)
+++.- +++....|-+ .-|.+....++|+..++..... .+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg-----------------------~qggph~~~IAa~Ava~~ea~~~~fk~ 312 (470)
T d1rv3a_ 256 RRGVRSVDPKTGKEILYNLESLINSAVFPG-----------------------LQGGPHNHAIAGVAVALKQAMTPEFKE 312 (470)
T ss_dssp ECSBCC-------CCBCCHHHHHHHHHTTT-----------------------TCCSCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccccccccccccchhHHHHHHHHhhhcCcc-----------------------ccccchhhHHHHHHHHHHHhcChHHHH
Confidence 76531 1121111111 1256677888888888776542 3444
Q ss_pred H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccC
Q psy16512 352 F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC 430 (815)
Q Consensus 352 ~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~ 430 (815)
+ +++.+.++.|.+.|.+. |+.+..... ..+++.+.+... .++...+.+.|.+.||.+..-...
T Consensus 313 Ya~qvv~NAk~La~~L~~~-------G~~v~~ggT------dnHlvlvdl~~~---g~~g~~ae~~Le~~gI~~Nkn~iP 376 (470)
T d1rv3a_ 313 YQRQVVANCRALSAALVEL-------GYKIVTGGS------DNHLILVDLRSK---GTDGGRAEKVLEACSIACNKNTCP 376 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSC------SSSEEEEEGGGG---TCCHHHHHHHHHHTTEECEEECCS
T ss_pred HHHHHHHHHHHHHHHHHhC-------CceeccCCC------CCceEEEeeccc---CCcHHHHHHHHHHcCcEECCCcCC
Confidence 5 88999999999999987 888885432 357777776432 244556889999999987532211
Q ss_pred CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHh
Q psy16512 431 NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 431 ~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~ 496 (815)
... ....++.|||..... -.++|+.++.+.|.+++.
T Consensus 377 ~D~------------------------------~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~ 416 (470)
T d1rv3a_ 377 GDK------------------------------SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE 416 (470)
T ss_dssp SCS------------------------------CTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCC------------------------------CCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 100 012246799986533 367999999999988764
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.54 E-value=4.5e-14 Score=155.02 Aligned_cols=301 Identities=11% Similarity=0.051 Sum_probs=169.3
Q ss_pred HHHHHHHHHhHcCC------CCCceeEEecCCchhhHHHHH--hhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEc
Q psy16512 107 IDQMRTKILQYFNT------DSDHYSVIFTSGATSAIKTVS--EYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~------~~~~~~iv~t~g~t~al~~~~--~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~ 176 (815)
..++|+.+++++.- .++...++.+.+++.++..++ ..+. .+|| |+++.+.++.+......++... .++.
T Consensus 75 ~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~ 153 (412)
T d1yaaa_ 75 LPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFENQGLKTATYPY 153 (412)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHHTTTCCEEEEEC
T ss_pred CHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhcc-CCCCEEecccccCchhHHHHHHcCCceecccc
Confidence 67888888887531 122211222334444443333 2233 7899 9999988887766665554443 5555
Q ss_pred Cchhh--hcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccC
Q psy16512 177 SVDDA--RNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG 254 (815)
Q Consensus 177 ~~~~~--~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g 254 (815)
..++. .+.+.....+ ....+++++++++++|||||..++.+++.++++ .|++++++++.|.++..-
T Consensus 154 ~~~~~~~~~~~~~~~~~----~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~--------~a~~~~~~ii~De~Y~~l 221 (412)
T d1yaaa_ 154 WANETKSLDLNGFLNAI----QKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVD--------AIASKNHIALFDTAYQGF 221 (412)
T ss_dssp EETTTTEECHHHHHHHH----HHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHH--------HHHHTTCEEEEEESCTTT
T ss_pred cccccccccchhhhccc----ccCCCceEEEEecCCCCCccccCCHHHHHHHHh--------hhccCCEEEeecceeeec
Confidence 44332 2333333222 133456889999999999999999777655554 344899999999987522
Q ss_pred CCC----C---------CCCCCCCcEEEEccccccccCCc--ceEEEEecccccccCcccccCceEEEEecCCccccccc
Q psy16512 255 SNM----L---------DLKQHQPDFISISFYKMFGYPTG--LGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKD 319 (815)
Q Consensus 255 ~~~----~---------dl~~~~~D~vv~S~~K~~g~p~G--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~ 319 (815)
... . .......-+++.|++|.|+ .+| +||+++.++.++.+......... . .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~G~RiG~~~~~~~~~~~~~~~~~~~~~--------~-----~ 287 (412)
T d1yaaa_ 222 ATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAVTS--------Q-----L 287 (412)
T ss_dssp SSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHHHH--------H-----H
T ss_pred ccCCcccchhhhhhhhhccccCCCeEEEEecCCccc-cCcCceEEEEEchhhhhhHHHHHHHHHH--------H-----H
Confidence 110 0 0112234478889999999 557 89999998776433211000000 0 0
Q ss_pred CccccccCCCCChhHHHHHHHHHHH------HHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCc-EEEcCCCCCCCCCc
Q psy16512 320 GLFEKFEDGTVNYLAIISLKYGFDT------MEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPL-VELYHDTDYGESKY 391 (815)
Q Consensus 320 ~~~~~~~~gt~~~~~~~al~~al~~------l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~-~~l~~~~~~~~~~~ 391 (815)
....+....+++..+..++...+.. ..+.-..+ +++++.++.+.+.|+++. .++ +..+.+.
T Consensus 288 ~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g----~~~~~~~~~~~------- 356 (412)
T d1yaaa_ 288 AKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG----TPGNWDHIVNQ------- 356 (412)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSCCTHHHHC-------
T ss_pred HHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCCCceeCCC-------
Confidence 0000112234444444444443332 11111122 667777888888887761 011 2222222
Q ss_pred ccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEE
Q psy16512 392 QGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSI 471 (815)
Q Consensus 392 ~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~i 471 (815)
++++.+ .+. +...+.+++.++||.+.+| .
T Consensus 357 -gG~F~~--~~l-----s~e~~~~L~~e~~V~~~~g-------------------------------------------~ 385 (412)
T d1yaaa_ 357 -CGMFSF--TGL-----TPQMVKRLEETHAVYLVAS-------------------------------------------G 385 (412)
T ss_dssp -CSSEEE--CCC-----CHHHHHHHHHHHCEECCTT-------------------------------------------S
T ss_pred -ceEEEe--cCc-----CHHHHHHHHHhCCEEECCC-------------------------------------------C
Confidence 444333 221 2334667778999876432 3
Q ss_pred EEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 472 RISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 472 Rvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
|||+.. .+.+.|++++++|.++++.
T Consensus 386 Ris~~g-~~~~~i~~l~~ai~~v~k~ 410 (412)
T d1yaaa_ 386 RASIAG-LNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp EEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred EEEecc-CCHHHHHHHHHHHHHHHHh
Confidence 888753 3567899999999997653
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.53 E-value=9.4e-14 Score=148.78 Aligned_cols=334 Identities=12% Similarity=0.100 Sum_probs=206.0
Q ss_pred ccccchhhHHHHHHHHhh-ccccCCCCh-hhhhhhhhhhHH-HHHHHHHhHcCCCCCceeE-EecCCchhhHHHHHhhhc
Q psy16512 70 AGVYSQSQMNQTIEQLKE-NIFSHPHGN-SVLSDFCVSEID-QMRTKILQYFNTDSDHYSV-IFTSGATSAIKTVSEYFE 145 (815)
Q Consensus 70 ~~~~p~~v~~al~~~l~~-~~~~np~s~-~~~~~~~~~~~~-~~r~~la~~~g~~~~~~~i-v~t~g~t~al~~~~~al~ 145 (815)
....++.+.+++..-+.. ...+.|... +.--+. ..+++ -+.++.+++||++...|.| +=..+++.|+.++..++.
T Consensus 36 EN~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~-iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~all 114 (463)
T d2a7va1 36 ENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEV-VDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL 114 (463)
T ss_dssp CCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHhcchhcccccCCCCCccccCCchh-HHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHHc
Confidence 445678888877665543 223455544 222222 22233 4678889999999875433 445677889999999998
Q ss_pred cCCCc-EEEecC---CCcchhhHH--HHhhccc------eEEcCc-hhhhcchhhhhhhhhhhhhcCCCccEEEEecccC
Q psy16512 146 FNEGS-FIYLTD---NHTSVLGMR--ELVKTNQ------IYSFSV-DDARNMLNEFKESQENVENMRHSNSLFVYPAESN 212 (815)
Q Consensus 146 ~~~gd-vv~~~~---~h~s~~~~~--~~~~~~g------~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n 212 (815)
+||| |+.... .|-+.-... ......+ .+.+++ ++.+|.+.+++.+. ..++++|++-.-.
T Consensus 115 -~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~------~~kPklIi~G~S~- 186 (463)
T d2a7va1 115 -QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTAR------LFRPRLIIAGTSA- 186 (463)
T ss_dssp -CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHH------HHCCSEEEECCSS-
T ss_pred -CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHh------hcCCceEEecccc-
Confidence 9999 443332 233221110 0111112 223343 35678888776443 2468999986544
Q ss_pred CCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCC-----CCCCCCCCCCcEEEEccccccccCCcceEEEE
Q psy16512 213 FSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGS-----NMLDLKQHQPDFISISFYKMFGYPTGLGALIV 287 (815)
Q Consensus 213 ~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~-----~~~dl~~~~~D~vv~S~~K~~g~p~G~G~l~~ 287 (815)
.-..+|.+++.++|+ +.|+++++|.+|.+|. .+-++. .+|++++|.||.|.+|.| |+++.
T Consensus 187 -y~r~~d~~~~reIad-----------~vga~l~~D~aH~aGLIA~g~~~sP~~--~aDvvt~tTHKTlrGPrg-GiIl~ 251 (463)
T d2a7va1 187 -YARLIDYARMREVCD-----------EVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFY 251 (463)
T ss_dssp -CCSCCCHHHHHHHHH-----------HTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEE
T ss_pred -cccccCHHHHHHHhh-----------cccceEEechhhhhHHhhhhhhcChhh--hhhhhhchhhhhhcCCCc-eEEEE
Confidence 346789999999999 8899999999998753 233332 369999999999998975 77777
Q ss_pred ecccc---------------cccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHh-hhhh
Q psy16512 288 KQKSA---------------HVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEK-KRKS 351 (815)
Q Consensus 288 ~~~~~---------------~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~-~~~~ 351 (815)
+++.. +++....|- -.-|.+....++|+..++..... .+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~avFP-----------------------g~qggph~h~iAa~Ava~~ea~~~~fk~ 308 (463)
T d2a7va1 252 RKGVKAVDPKTGREIPYTFEDRINFAVFP-----------------------SLQGGPHNHAIAAVAVALKQACTPMFRE 308 (463)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTT-----------------------TTCCSCCHHHHHHHHHHHHHHHSHHHHH
T ss_pred cccccccccccCccchhHHHHHhhhhcCc-----------------------ccchhhhhhhHHHHHHHHHHhcCchHHH
Confidence 77532 111111111 11246677888888888776543 3445
Q ss_pred H-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccC
Q psy16512 352 F-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHC 430 (815)
Q Consensus 352 ~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~ 430 (815)
+ +++.++++.|.+.|.+. |+++++... ..+++.+.+... .++...+.+.|.+.||.+.--...
T Consensus 309 Ya~qVv~NAk~La~~L~~~-------G~~vv~ggT------dnHlvlvdl~~~---~~~G~~ae~~Le~~gI~~Nkn~iP 372 (463)
T d2a7va1 309 YSLQVLKNARAMADALLER-------GYSLVSGGT------DNHLVLVDLRPK---GLDGARAERVLELVSITANKNTCP 372 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------TCEEGGGSC------SSSEEEEECTTT---TCCHHHHHHHHHHTTEECEEECCT
T ss_pred HHHHHHHHHHHHHHHHHhC-------CCeeecCCC------CCceeeeecccc---CCCHHHHHHHHHhccCccCCccCC
Confidence 5 89999999999999987 889885432 357777776432 134456899999999998542211
Q ss_pred CchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCC----CCHHHHHHHHHHHHHHHh
Q psy16512 431 NPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHA----SNWDDVKYFLSFLNQYFL 496 (815)
Q Consensus 431 ~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~----~t~edi~~lv~~L~~~~~ 496 (815)
.. . ....++.|||..... -.++|+.++.+.|.+.+.
T Consensus 373 ~D---~---------------------------~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~ 412 (463)
T d2a7va1 373 GD---R---------------------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 412 (463)
T ss_dssp TC---C---------------------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CC---C---------------------------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 10 0 112246799986643 267999999999988765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.2e-15 Score=164.92 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=128.5
Q ss_pred hhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCC------CCCceeEEecCCchhh-
Q psy16512 64 YLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNT------DSDHYSVIFTSGATSA- 136 (815)
Q Consensus 64 yLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~~iv~t~g~t~a- 136 (815)
|.|..+..+..+.+.++.. .+.... .-...+..... ..++|+.+++++.- +++. ++.+.+++.+
T Consensus 36 ~~d~~g~~p~~~~V~~A~~-~l~~~~--~~~~~Y~p~~G----~~~lR~aia~~~~~~~~~~~~~~~--i~~~~~~~~~~ 106 (397)
T d3tata_ 36 YYNEDGIIPQLQAVAEAEA-RLNAQP--HGASLYLPMEG----LNCYRHAIAPLLFGADHPVLKQQR--VATIQTLGGSG 106 (397)
T ss_dssp CCCTTSSCCCCHHHHHHHH-HHTTSC--CSSBCCCCTTC----CHHHHHHHHHHHTCSSCHHHHTTC--EEECCBSHHHH
T ss_pred CcCCCCCCCCcHHHHHHHH-HHHhCc--ccCCCCCCccc----CHHHHHHHHHHHhhccCCcCCcCc--EEEecCchhHH
Confidence 3344444455566666543 332211 00111333344 78899999998753 2343 6666555543
Q ss_pred ---HHHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhh--cchhhhhhhhhhhhhcCCCccEEEEec
Q psy16512 137 ---IKTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR--NMLNEFKESQENVENMRHSNSLFVYPA 209 (815)
Q Consensus 137 ---l~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~t~lv~i~~ 209 (815)
+.+++.++. .+|| |+++.+.|+.+....+.++... .+++..++.. +.+...+.+ ....++++++++++
T Consensus 107 ~~~l~~~~~~~~-~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 181 (397)
T d3tata_ 107 ALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATL----KTLPARSIVLLHPC 181 (397)
T ss_dssp HHHHHHHHHHHH-CSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHH----TTCCSSCCCEECSS
T ss_pred HHHHHHHHhhhc-CCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHh----hhcccccEEEEecC
Confidence 555555565 8999 9999988888877666554443 5555544432 333332211 13456789999999
Q ss_pred ccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCC-------C--CCCCCCCcEEEEccccccccCC
Q psy16512 210 ESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNM-------L--DLKQHQPDFISISFYKMFGYPT 280 (815)
Q Consensus 210 ~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~-------~--dl~~~~~D~vv~S~~K~~g~p~ 280 (815)
++||||.+++.+++.++++ .|++++++++.|.++..-.-. . .......-+++.|++|.++ .+
T Consensus 182 p~NPTG~~~s~~~~~~l~~--------~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~-~~ 252 (397)
T d3tata_ 182 CHNPTGADLTNDQWDAVIE--------ILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFS-LY 252 (397)
T ss_dssp SCSSSCCCCCHHHHHHHHH--------HHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHT-BT
T ss_pred CCCCCCeeCCHHHHHHHHH--------HHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCccccc-cc
Confidence 9999999999887666555 344999999999987532110 0 0011123477789999999 55
Q ss_pred c--ceEEEEecccccc
Q psy16512 281 G--LGALIVKQKSAHV 294 (815)
Q Consensus 281 G--~G~l~~~~~~~~~ 294 (815)
| +|+++++...++.
T Consensus 253 G~RiG~~~~~~~~~~~ 268 (397)
T d3tata_ 253 GERVGGLSVMCEDAEA 268 (397)
T ss_dssp TTCCBCCEEECSSTTH
T ss_pred CccccccccchhHHHH
Confidence 7 7999998877643
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.51 E-value=2.8e-14 Score=158.03 Aligned_cols=316 Identities=11% Similarity=0.095 Sum_probs=181.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCcEEEecCCCcchhhHHHHhhccceEEcC---------
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGSFIYLTDNHTSVLGMRELVKTNQIYSFS--------- 177 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gdvv~~~~~h~s~~~~~~~~~~~g~v~~~--------- 177 (815)
+.++++.++++||.+. +++++++|+|+.+++.++. ++||.|+....+.+...-....+.. .+.+.
T Consensus 77 ~~~lE~~~a~l~G~e~----al~~~SGt~An~~a~~~l~-~~Gd~Vi~~~~f~~~~~~i~~~g~~-~~~~~~~~~~~~~~ 150 (456)
T d1c7ga_ 77 FYHLEKTVKELFGFKH----IVPTHQGRGAENLLSQLAI-KPGQYVAGNMYFTTTRFHQEKNGAT-FVDIVRDEAHDASL 150 (456)
T ss_dssp HHHHHHHHHHHHCCSE----EEEESSHHHHHHHHHHHHC-CTTEEEEESSCCHHHHHHHHHTTEE-EEECBCGGGGCTTC
T ss_pred HHHHHHHHHHHhCCCe----EEECCCHHHHHHHHHHHhc-CCCCeEecCcchHHHHHHHHHcCce-eeeccccccccccc
Confidence 8899999999999865 7999999999999999998 9999655543222221112222111 22211
Q ss_pred ---chhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc-cccChH---HHHHHhhccccccccccCCCCeEEEEecc
Q psy16512 178 ---VDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG-TKYPLS---WCNTVHRNHVFKKHFKCSRSNCFVLLDAA 250 (815)
Q Consensus 178 ---~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG-~~~~l~---~I~~l~~~~~~~~~~~~~~~gi~vivD~a 250 (815)
..+.++++.++++|+ +....++.++++.+++|+.| ...|++ +|.++|+ ++|+.+++|++
T Consensus 151 ~~~~~~~~d~~~le~~I~---~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~-----------~~~~~~~~D~a 216 (456)
T d1c7ga_ 151 NLPFKGDIDLNKLATLIK---EKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMAS-----------TYGIKIFYDAT 216 (456)
T ss_dssp CCSCTTCBCHHHHHHHHH---HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HHTCCEEEECT
T ss_pred cCCccccCCHHHHHHHhh---hcCCccceeEEeeecccccccceecHHHHHHHHHHHH-----------HcCCEEEEEcc
Confidence 123456667766553 22223467999999998875 555655 5566777 99999999999
Q ss_pred cccCCC------CCCCCC-----------CCCcEEEEccccccccCCcceEEEEeccc-ccccCccc-ccCceEEEEecC
Q psy16512 251 TYCGSN------MLDLKQ-----------HQPDFISISFYKMFGYPTGLGALIVKQKS-AHVLNKTF-YGGGTVKISMAN 311 (815)
Q Consensus 251 ~~~g~~------~~dl~~-----------~~~D~vv~S~~K~~g~p~G~G~l~~~~~~-~~~l~~~~-~g~~~~~~~~~~ 311 (815)
+..+.. ...... ..+|++++|++|.++++.| |+++.+++. .++++... ..++
T Consensus 217 ~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l~~~~r~~~~~~~g-------- 287 (456)
T d1c7ga_ 217 RCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEMFSAAKELVVVYEG-------- 287 (456)
T ss_dssp THHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHHHHHHHHHHHHHTC--------
T ss_pred hhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHHHHHHHHhccccCC--------
Confidence 865421 111111 1379999999999996644 777776543 33332211 0111
Q ss_pred CcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCC
Q psy16512 312 ENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESK 390 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~ 390 (815)
....|..+...+.++..++..... ... ++..+.+++|.++|.+. ++.+..+.+
T Consensus 288 ------------~~~~g~~~~~~~~a~a~~l~e~~~--~~~l~~r~~~~~~L~e~L~~~-------g~~vv~p~g----- 341 (456)
T d1c7ga_ 288 ------------MPSYGGLAGRDMEAMAIGLREAMQ--YEYIEHRVKQVRYLGDKLREA-------GVPIVEPTG----- 341 (456)
T ss_dssp ------------CTTTTTCCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHT-------TCCBCSSCC-----
T ss_pred ------------CcccchhhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhc-------cCCcccCCC-----
Confidence 111234444555555454443322 222 55567778899999887 555554433
Q ss_pred cccceEEEEEe----cCCCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCC
Q psy16512 391 YQGNIVNFNLL----HKDGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDG 465 (815)
Q Consensus 391 ~~~~i~~f~~~----~~~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~ 465 (815)
++.+..... ......+ ....+.+++.+.||.... .+... .+..+. .+.. ..
T Consensus 342 --~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~~~GIr~~~-----~g~~~--~~~~~~-----------~g~~----~~ 397 (456)
T d1c7ga_ 342 --GHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSME-----RGIVS--AGRSKE-----------TGEN----HR 397 (456)
T ss_dssp --SSEEEEEHHHHCTTSCGGGCHHHHHHHHHHHHHSEECEE-----ESHHH--HCBCSS-----------SCCB----CC
T ss_pred --CcceeEechhhccCCCcccccHHHHHHHHHHHhCeeecc-----cCccc--cccCCc-----------ccCc----cC
Confidence 344443322 1111111 112244555677875322 11110 111000 0000 00
Q ss_pred CCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 466 KPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 466 ~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
-....+|++++.. .|.++||+++++|++++.+....
T Consensus 398 ~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i 434 (456)
T d1c7ga_ 398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI 434 (456)
T ss_dssp CSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGC
T ss_pred CccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhc
Confidence 1135799998743 39999999999999988666554
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=2.4e-13 Score=148.19 Aligned_cols=210 Identities=13% Similarity=0.100 Sum_probs=125.9
Q ss_pred hhhhhhcccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcC---CCCCceeEEecCCchhh--H
Q psy16512 63 CYLDYTGAGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFN---TDSDHYSVIFTSGATSA--I 137 (815)
Q Consensus 63 iyLd~a~~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g---~~~~~~~iv~t~g~t~a--l 137 (815)
.|.|..+..+.++.+.+++.+...+.. .+ .+..... ..++|+++++++. .....-..+.+.+++.+ +
T Consensus 35 ~~~d~~g~~~~~~~V~~A~~~~~~~~~---~~-~Y~p~~G----~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (394)
T d2ay1a_ 35 VYKDATGHTPIMRAVHAAEQRMLETET---TK-TYAGLSG----EPEFQKAMGELILGDGLKSETTATLATVGGTGALRQ 106 (394)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHHCC---CC-CCCCSSC----CHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHH
T ss_pred CccCCCCCCCCCHHHHHHHHHHhhCCC---CC-CCCCCCC----CHHHHHHHHHHHhccccccccccceeccCchHHHHH
Confidence 355555566666777777655443321 11 1222233 6778888888752 11111124555555544 4
Q ss_pred HHHHhhhccCCCc-EEEecCCCcchhhHHHHhhccc-eEEcCchhhh--cchhhhhhhhhhhhhcCCCccEEEEecccCC
Q psy16512 138 KTVSEYFEFNEGS-FIYLTDNHTSVLGMRELVKTNQ-IYSFSVDDAR--NMLNEFKESQENVENMRHSNSLFVYPAESNF 213 (815)
Q Consensus 138 ~~~~~al~~~~gd-vv~~~~~h~s~~~~~~~~~~~g-~v~~~~~~~~--~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~ 213 (815)
.+.+..+. .+|| |+++.+.++.+....+.++... .++...+... +.+...+. .....+++++++++++|||
T Consensus 107 ~~~~~~~~-~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~p~NP 181 (394)
T d2ay1a_ 107 ALELARMA-NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKAD----LAAAKKGDMVLLHGCCHNP 181 (394)
T ss_dssp HHHHHHHH-CTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHH----HHTCCTTCEEEEESSSCTT
T ss_pred HHHHhhhc-CCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHH----HhhcccCcEEEEeCCCCCC
Confidence 45455555 8898 9999988888777777665554 5555433222 22222221 2234566899999999999
Q ss_pred CccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCC---------CCCCCCCcEEEEccccccccCCc--c
Q psy16512 214 SGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNML---------DLKQHQPDFISISFYKMFGYPTG--L 282 (815)
Q Consensus 214 tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~---------dl~~~~~D~vv~S~~K~~g~p~G--~ 282 (815)
||..++.+++.++++ .|++++++++.|.++..-...- .......-+++.|++|.++ .+| +
T Consensus 182 TG~~~s~e~~~~l~~--------la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~-~~G~R~ 252 (394)
T d2ay1a_ 182 TGANLTLDQWAEIAS--------ILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFG-IYRERT 252 (394)
T ss_dssp TCCCCCHHHHHHHHH--------HHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTT-CGGGCE
T ss_pred CCCCCCHHHHHHHHH--------HhhcceEEEEEeccchhhcccccccchhhhhhhhhccccccccccccccc-CCcccc
Confidence 999999777655554 3448999999998875321100 0001122456779999888 446 8
Q ss_pred eEEEEecccccc
Q psy16512 283 GALIVKQKSAHV 294 (815)
Q Consensus 283 G~l~~~~~~~~~ 294 (815)
|++++.....+.
T Consensus 253 G~~~~~~~~~~~ 264 (394)
T d2ay1a_ 253 GCLLALCADAAT 264 (394)
T ss_dssp EEEEEECSSHHH
T ss_pred cchhhchhHHHH
Confidence 999998876543
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=3e-12 Score=138.52 Aligned_cols=308 Identities=10% Similarity=0.047 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc-EEEecCCCcchhhH-HHHhhccc--eEEcCchh
Q psy16512 105 SEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS-FIYLTDNHTSVLGM-RELVKTNQ--IYSFSVDD 180 (815)
Q Consensus 105 ~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd-vv~~~~~h~s~~~~-~~~~~~~g--~v~~~~~~ 180 (815)
+.+-+++..|+++.|.+..+ .-.-.|++.....++.+......+ +++....||+.... ...+...| .+.++.+.
T Consensus 108 q~l~e~q~~l~eltGmd~~n--~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~ 185 (437)
T d1wyua1 108 QATFEYQTMIAELAGLEIAN--ASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEG 185 (437)
T ss_dssp HHHHHHHHHHHHHHTSSEEC--SCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBT
T ss_pred HHHHHHHHHHHHhhCCCccc--cCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccc
Confidence 33789999999999987543 444567777766666655433334 88888899987663 33445556 44444322
Q ss_pred -hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHHHHHhhccccccccccCCCCeEEEEecccccCCCCCC
Q psy16512 181 -ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSNMLD 259 (815)
Q Consensus 181 -~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~~~d 259 (815)
..+.. ..++++..|++++||+ .|.+-++++|.++++ +.|.++++|+.-..-.....
T Consensus 186 ~~~~~~-----------~~~~~~Aavmi~~Pnt-~G~~ed~~~i~~~~h-----------~~G~l~~~~ad~~al~~l~~ 242 (437)
T d1wyua1 186 GRTPLP-----------EVGEEVGAVVVQNPNF-LGALEDLGPFAEAAH-----------GAGALFVAVADPLSLGVLKP 242 (437)
T ss_dssp TBCCCC-----------CCCTTEEEEEEESSCT-TSBCCCHHHHHHHHH-----------HTTCEEEEECCTTGGGTBCC
T ss_pred ccchhh-----------hhccceeEEEEccccc-cccccchHHHHHHhh-----------hccceEEeeechhhhhcccc
Confidence 11111 1246789999999955 699999999999999 78988888765332222223
Q ss_pred CCCCCCcEEEEccccccccCCc-----ceEEEEecccccccCcccccC-----ceEEEEecCCcccccccCccccccCCC
Q psy16512 260 LKQHQPDFISISFYKMFGYPTG-----LGALIVKQKSAHVLNKTFYGG-----GTVKISMANENFHIKKDGLFEKFEDGT 329 (815)
Q Consensus 260 l~~~~~D~vv~S~~K~~g~p~G-----~G~l~~~~~~~~~l~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~gt 329 (815)
..++++|+++++ ||.||.|.| .|++.+++++.+.+...+.|. +...+...... +.... |.+.+|
T Consensus 243 Pg~~GaDi~~g~-~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqt----reqhI-rRekat 316 (437)
T d1wyua1 243 PGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQA----REQYI-RRAKAK 316 (437)
T ss_dssp HHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGG----GSHHH-HGGGSS
T ss_pred ccccccceEeec-cceeccccCCCcCccccccccchhhccccccccccccccCCcccceeeccc----ccccc-cccccc
Confidence 345689999998 665555554 699999998876665444331 11111111100 01111 122233
Q ss_pred CC-----hhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEec
Q psy16512 330 VN-----YLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLH 402 (815)
Q Consensus 330 ~~-----~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~ 402 (815)
.| .+........+.++...|... ++...+++++.++|.++ ++++++.+.. .-.-+.+.+.
T Consensus 317 snict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~------~g~~~~~~~~------~f~ef~v~~~- 383 (437)
T d1wyua1 317 SNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV------PGVRPFTPKP------FFNEFALALP- 383 (437)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------TTCEECSCSS------BCSEEEEECS-
T ss_pred cchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhc------CCeeccCCCC------eeeEEEEECC-
Confidence 33 222222222233333333222 78888899999999988 6888765432 1222333322
Q ss_pred CCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHH
Q psy16512 403 KDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWD 482 (815)
Q Consensus 403 ~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~e 482 (815)
.+..++.+.|.++||...+-.+ + -..++.+.+++.-.+|++
T Consensus 384 -----~~~~~i~k~L~d~G~~~~~~~~--~--------------------------------~~~~~~lli~~TE~~tke 424 (437)
T d1wyua1 384 -----KDPEAVRRALAERGFHGATPVP--R--------------------------------EYGENLALFAATELHEEE 424 (437)
T ss_dssp -----SCHHHHHHHHHHTTCCCCEECC--T--------------------------------TSCSSEEEEECCTTCCHH
T ss_pred -----CCHHHHHHHHHhCCCCCCcccc--c--------------------------------CCCCCeEEEecCCCCCHH
Confidence 1234688999999997533111 0 012478999999889999
Q ss_pred HHHHHHHHHHHHH
Q psy16512 483 DVKYFLSFLNQYF 495 (815)
Q Consensus 483 di~~lv~~L~~~~ 495 (815)
|||+|+++|++++
T Consensus 425 eiD~~v~al~eil 437 (437)
T d1wyua1 425 DLLALREALKEVL 437 (437)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999864
|
| >d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Parvulin species: Human (Homo sapiens), hpar14 [TaxId: 9606]
Probab=99.40 E-value=4.4e-14 Score=119.79 Aligned_cols=55 Identities=67% Similarity=1.278 Sum_probs=52.1
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~ 57 (815)
.+||||||+.+++|+|+|++++|.++.|++|+|++++.||+|+||||||++++++
T Consensus 42 ~~~G~lG~~~~~~l~~ef~~a~f~l~~g~is~~~~~~~pi~T~~G~HIikv~~kr 96 (96)
T d1eq3a_ 42 RQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96 (96)
T ss_dssp TCCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEEEEECC
T ss_pred ccccccceechHHhhHHHHHHHHhCCCCcCccccccCCCEecCCeEEEEEEeeEC
Confidence 4699999999999999999999999999999999999999999999999998753
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.2e-10 Score=124.20 Aligned_cols=330 Identities=12% Similarity=0.090 Sum_probs=201.7
Q ss_pred chhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+ -+--.+.+.+++.+++....+... ...... ..++.+.++++.+.+ . +.|++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~--~--v~~~~sG 107 (404)
T d2byla1 39 EGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR---AFYNNV----LGEYEEYITKLFNYH--K--VLPMNTG 107 (404)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT---TEEESS----HHHHHHHHHHHHTCS--E--EEEESSH
T ss_pred CCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc---ccccch----HHHHHHhhhhccccc--c--cccccCc
Confidence 3456666443 234567888888887764221111 111222 566777788887653 2 8999999
Q ss_pred hhhHHHHHhhhcc--------CCC--cEEEecCCCcc-hhhHHHHhhc----cceEEcCch----hhhcchhhhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--------NEG--SFIYLTDNHTS-VLGMRELVKT----NQIYSFSVD----DARNMLNEFKESQEN 194 (815)
Q Consensus 134 t~al~~~~~al~~--------~~g--dvv~~~~~h~s-~~~~~~~~~~----~g~v~~~~~----~~~~~~~~~~~l~~~ 194 (815)
++|+..++..... ..+ .++.....+.. .......... .++.|..++ ...+.+.+++++.
T Consensus 108 seA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~-- 185 (404)
T d2byla1 108 VEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQ-- 185 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHT--
T ss_pred cccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcC--
Confidence 9999988876531 122 25555444332 2222111100 011111111 0112333443322
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCC--CCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDL--KQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl--~~~~~ 265 (815)
.++..+|++.-+....|...| +++|.++|+ ++|+++|+|+++. +|.. .... -...|
T Consensus 186 ----~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEV~tGfgR~G~~~a~~~~gv~P 250 (404)
T d2byla1 186 ----DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCT-----------RHQVLFIADEIQTGLARTGRWLAVDYENVRP 250 (404)
T ss_dssp ----STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred ----CCCeEEEEECCccCCCCCccCCHHHHHHHHHHHH-----------hcCeEEEeeccccccccccccchhhhcCCCC
Confidence 345778888888888898877 677888888 9999999999875 2221 1111 12348
Q ss_pred cEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 266 D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
|++ ++.|.+++- .-+|++++++++.+.+.+...++ ..+-|..++++..+.|+.
T Consensus 251 Di~--~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~------------------------T~~gnpl~~aaa~a~L~~ 304 (404)
T d2byla1 251 DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFS------------------------TYGGNPLGCRVAIAALEV 304 (404)
T ss_dssp SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSCC------------------------SSTTCHHHHHHHHHHHHH
T ss_pred CEE--EECchhhCCCccceeeeechhhhhccCCCCCCc------------------------CCCcCHHHHHHHHHHHHH
Confidence 987 566876632 12789999988876554432111 113466778888888888
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.+.. ..++..++.+++.+.|.++.+ +.+.-+ ...|.+..+.+.+.... ....+.+.+.++||.+
T Consensus 305 i~~~~-l~~~~~~~g~~l~~~l~~l~~----~~i~~v--------Rg~Gl~~~i~~~~~~~~--~~~~~~~~l~~~Gvl~ 369 (404)
T d2byla1 305 LEEEN-LAENADKLGIILRNELMKLPS----DVVTAV--------RGKGLLNAIVIKETKDW--DAWKVCLRLRDNGLLA 369 (404)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTSCT----TTEEEE--------EEETTEEEEEECCCSSC--CHHHHHHHHHHTTEEC
T ss_pred HHhcC-chhhhhHhhHHHHHHHHhhcc----ccceee--------eecccEEEEEEecCCch--hHHHHHHHHHhCCeEE
Confidence 87641 237888889999999988742 222222 22467888887654332 2345777888999987
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++.. .+.||+++.+..|++|+|.++++|++.+++
T Consensus 370 ~~~~---------------------------------------~~~i~l~PpL~it~~~id~~~~~l~~al~~ 403 (404)
T d2byla1 370 KPTH---------------------------------------GDIIRFAPPLVIKEDELRESIEIINKTILS 403 (404)
T ss_dssp EEEE---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ecCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHc
Confidence 5310 257999998888999999999999998764
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.28 E-value=2.4e-12 Score=143.33 Aligned_cols=317 Identities=12% Similarity=0.091 Sum_probs=170.1
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc--------EEEecCCCcchhhHHHHhhccceEEc--
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS--------FIYLTDNHTSVLGMRELVKTNQIYSF-- 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd--------vv~~~~~h~s~~~~~~~~~~~g~v~~-- 176 (815)
+.++++++++++|.+. ++|++++|+|+.+++.++. ++|+ ++.....|.+........+.. .+..
T Consensus 77 ~~~le~~~a~l~g~~~----~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~-~~~~~~ 150 (465)
T d1ax4a_ 77 YYDLKDKAKELFNYDY----IIPAHQGRGAENILFPVLL-KYKQKEGKAKNPVFISNFHFDTTAAHVELNGCK-AINIVT 150 (465)
T ss_dssp HHHHHHHHHHHHCCCE----EEEESSHHHHHHHHHHHHH-HHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCE-EEECBC
T ss_pred HHHHHHHHHHHHCCCE----EEECCCcHHHHHHHHHHHH-HHHHhcCCCCCeEEeccchhhhhHHHHHHcCCe-eecccc
Confidence 7789999999999854 8999999999999999886 3332 444433333333223322211 2211
Q ss_pred ----------CchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCcc-ccChH---HHHHHhhccccccccccCCCC
Q psy16512 177 ----------SVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGT-KYPLS---WCNTVHRNHVFKKHFKCSRSN 242 (815)
Q Consensus 177 ----------~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~-~~~l~---~I~~l~~~~~~~~~~~~~~~g 242 (815)
...+.++.+.++++|+ +.....+.+++++..+|..|. ..|.+ +|.++|+ +||
T Consensus 151 ~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~-----------~~g 216 (465)
T d1ax4a_ 151 EKAFDSETYDDWKGDFDIKKLKENIA---QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAK-----------QHG 216 (465)
T ss_dssp GGGGCTTSCCTTTTCBCHHHHHHHHH---HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHH-----------HHT
T ss_pred cccCCCCCCCCccCccCHHHHHHHHH---hhccccccceeeccccccCceecCCHHHHHHHHHHHH-----------HcC
Confidence 1234456777776553 222234667777777766654 45554 5566677 999
Q ss_pred eEEEEecccccCCCC---------CCCCC--------CCCcEEEEccccccccCCcceEEEEeccccc--ccCcccccCc
Q psy16512 243 CFVLLDAATYCGSNM---------LDLKQ--------HQPDFISISFYKMFGYPTGLGALIVKQKSAH--VLNKTFYGGG 303 (815)
Q Consensus 243 i~vivD~a~~~g~~~---------~dl~~--------~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~--~l~~~~~g~~ 303 (815)
+++|+|+++..+... ..... ...|++++|.+|.+++| +.|+++.++.... ........+.
T Consensus 217 ~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~-~~g~l~~~~~~~~~~~~~~~~~~~~ 295 (465)
T d1ax4a_ 217 IFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN-IGGLVAIRDNEEIFTLARQRCVPME 295 (465)
T ss_dssp CCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS-SCEEEEESSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccc-cceeEeecchHHHHHhhhccccccc
Confidence 999999998643210 01100 12689999999998845 5688888765321 1100000000
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.....+......+.++...+. ....... ++..+.++++.+.|+++ ++.++.
T Consensus 296 -------------------~~~~~~~~~~~~~~a~~~~~~--e~~~~~~~~~~~~~~~~l~~~L~~~-------g~~~v~ 347 (465)
T d1ax4a_ 296 -------------------GFVTYGGLAGRDMAAMVQGLE--EGTEEEYLHYRIGQVKYLGDRLREA-------GIPIQY 347 (465)
T ss_dssp -------------------CSTTTTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHT-------TCCBCS
T ss_pred -------------------cCCCcchhhHHHHHHHhhhhH--HhhhHHHHHHHHHHHHHHHHHHHhh-------cCcccc
Confidence 000111222222222222211 1222222 66667788999999887 455554
Q ss_pred CCCCCCCCcccceEEEEEec----CCCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 383 DTDYGESKYQGNIVNFNLLH----KDGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~~~----~~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
+.. +..+.+.... .....+ ....+.+.+.+.||....... .. .+... ..|
T Consensus 348 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~---~~----~~~~~-------~~g---- 402 (465)
T d1ax4a_ 348 PTG-------GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGS---FL----LGRDP-------ATG---- 402 (465)
T ss_dssp SCC-------SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESH---HH----HCBCT-------TTC----
T ss_pred CCC-------cceeeeehhhhcCCCccccchhHHHHHHHHHhcCceeccccc---cc----ccccc-------ccC----
Confidence 432 3333333221 111111 122345566778876532211 00 00000 000
Q ss_pred CcccccCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 458 DDKDIIDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
.. .....+.+|+++... .|+||||+++++|++++.+....
T Consensus 403 ~~----~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i 443 (465)
T d1ax4a_ 403 EQ----KHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATL 443 (465)
T ss_dssp SB----CCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred Cc----cCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 00 011236899997643 48999999999999987654443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.26 E-value=9.2e-10 Score=119.37 Aligned_cols=331 Identities=14% Similarity=0.101 Sum_probs=188.0
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+.++.. .... ...+.+.+.++.+.+ . +.|+.++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~--~--v~~~~sg 105 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAF---FSVP----LGICERYLTNLLGYD--K--VLMMNTG 105 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTS---EEHH----HHHHHHHHHHHHTCS--E--EEEESSH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCccccc---chHH----HHHHHHhhhhccccc--e--eeeeccc
Confidence 34567764431 2246888888888776533322221 1122 556667777777753 2 8899999
Q ss_pred hhhHHHHHhhhcc--------CCCc--EEEecCCCcchh-hHHHHhhccc----eEEcCchhh----hcchhhhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--------NEGS--FIYLTDNHTSVL-GMRELVKTNQ----IYSFSVDDA----RNMLNEFKESQEN 194 (815)
Q Consensus 134 t~al~~~~~al~~--------~~gd--vv~~~~~h~s~~-~~~~~~~~~g----~v~~~~~~~----~~~~~~~~~l~~~ 194 (815)
++|+..++..... ..+. ++.....+.... .......... ..+...... .+.+.+..++
T Consensus 106 s~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 182 (404)
T d1z7da1 106 AEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEEL--- 182 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHH---
T ss_pred cchHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHh---
Confidence 9998877765421 1121 444433322221 1111111111 111111000 0111112111
Q ss_pred hhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CC--CCCCCCC
Q psy16512 195 VENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--ML--DLKQHQP 265 (815)
Q Consensus 195 ~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~--dl~~~~~ 265 (815)
..++..+|++.-+....|.+.| +++|.++|+ ++|+++|+|+++. +|.. .. ..-...|
T Consensus 183 ---~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~-----------~~g~llI~DEV~tGfgRtG~~~~~e~~gv~P 248 (404)
T d1z7da1 183 ---KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICK-----------KYNVLFVADEVQTGLGRTGKLLCVHHYNVKP 248 (404)
T ss_dssp ---TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred ---cCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHH-----------HcCCEEEEEcCccCCCcccccccccccCCCC
Confidence 1345788998888888899887 788889998 9999999999985 3211 11 1112358
Q ss_pred cEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 266 DFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 266 D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
|++ ++.|.+++- .-+|++++++++.+.+++...++ ..+-|..+.++..+.++.
T Consensus 249 Div--t~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~------------------------T~~gnpl~~aaa~a~L~~ 302 (404)
T d1z7da1 249 DVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGS------------------------TYGGNPLAASICVEALNV 302 (404)
T ss_dssp SEE--EECGGGGTTSSCCEEEEECHHHHTTCCTTCCCC------------------------TTTTCHHHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCCCcccccchHHHHccCCCCCcCc------------------------CCCCCcchhhhhhhhhhh
Confidence 987 556877631 12789999998876554332111 113466777777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEe
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQL 424 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v 424 (815)
+.+.. ..++..++.+++.+.+.++. ...+.+.-+ ...|.++.+.+.+... ...++.+.+.++||.+
T Consensus 303 ~~~~~-~~~~~~~~~~~~~~~l~~~~--~~~~~v~~v--------rg~Gl~~~i~~~~~~~---~~~~~~~~l~~~Gl~~ 368 (404)
T d1z7da1 303 LINEK-LCENAEKLGGPFLENLKREL--KDSKIVRDV--------RGKGLLCAIEFKNELV---NVLDICLKLKENGLIT 368 (404)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHHHH--TTCTTEEEE--------EEETTEEEEEECTTTC---CHHHHHHHHHHTTEEC
T ss_pred hhcch-hhhhhccchhHHHHHHHHHH--hcCCCeEEE--------EeeCcEEEEEEcCCcc---cHHHHHHHHHhCCeEE
Confidence 65542 22555555555555554431 011333322 2347788888875432 2345778888999987
Q ss_pred ccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 425 RTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 425 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
++.. .+.||+++.+..|++++++++++|++.+++
T Consensus 369 ~~~~---------------------------------------~~~ir~~Ppl~it~~~id~~~~~l~~alk~ 402 (404)
T d1z7da1 369 RDVH---------------------------------------DKTIRLTPPLCITKEQLDECTEIIVKTVKF 402 (404)
T ss_dssp CEET---------------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCC---------------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHHh
Confidence 5310 257999988888999999999999998754
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=5.2e-10 Score=120.47 Aligned_cols=325 Identities=13% Similarity=0.152 Sum_probs=192.6
Q ss_pred hhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCch
Q psy16512 61 DICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGAT 134 (815)
Q Consensus 61 ~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t 134 (815)
+..|+|..+ -+--.+++.+++.+++.... ..+... .... ..++.+.+.+.... ....+.|+++++
T Consensus 36 G~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~-~~~~~~--~~~~----~~~la~~l~~~~~~--~~~~v~f~~sGs 106 (387)
T d1vefa1 36 GNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM-AMPQTL--PTPM----RGEFYRTLTAILPP--ELNRVFPVNSGT 106 (387)
T ss_dssp SCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCTTS--CCHH----HHHHHHHHHHTSCT--TEEEEEEESSHH
T ss_pred CCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhc-cccccc--CCch----HHHHHHHhhhhccc--cceeeccccCch
Confidence 455666433 23345788888877765422 122211 1111 33344444444433 223489999999
Q ss_pred hhHHHHHhhhcc--CCCcEEEecCC-CcchhhHHHHhhcc----ceEEcCch-h---hhcchhhhhhhhhhhhhcCCCcc
Q psy16512 135 SAIKTVSEYFEF--NEGSFIYLTDN-HTSVLGMRELVKTN----QIYSFSVD-D---ARNMLNEFKESQENVENMRHSNS 203 (815)
Q Consensus 135 ~al~~~~~al~~--~~gdvv~~~~~-h~s~~~~~~~~~~~----g~v~~~~~-~---~~~~~~~~~~l~~~~~~~~~~t~ 203 (815)
+|+..++..... .+..++..... |............. +..|.... . ..+.+.+++ ...++..
T Consensus 107 eA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~-------~~~~~iA 179 (387)
T d1vefa1 107 EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKR-------AVDEETA 179 (387)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHH-------HCCTTEE
T ss_pred HHHHHHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHH-------hcCCCeE
Confidence 999988876542 23336555544 43333333222111 01111110 0 112233333 3346788
Q ss_pred EEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCCCCCC----CCCCCcEEEEcccc
Q psy16512 204 LFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSNMLDL----KQHQPDFISISFYK 274 (815)
Q Consensus 204 lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~~~dl----~~~~~D~vv~S~~K 274 (815)
+|++.-+....|...+ +++|.++|+ ++|+++|+|+++. +|..-.-. -...||+++.+ |
T Consensus 180 avi~EPi~g~~G~~~~~~~~l~~l~~lc~-----------~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K 246 (387)
T d1vefa1 180 AVILEPVQGEGGVRPATPEFLRAAREITQ-----------EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--K 246 (387)
T ss_dssp EEEECSEETTTTSEECCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--G
T ss_pred EEEEECCCCCCCCccCCHHHHHHHHHHHH-----------HcCceEEecccccccCccCCCcccccCCcCCceeeec--c
Confidence 8999888888898877 777888888 9999999999875 33321111 12358997765 7
Q ss_pred ccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHH
Q psy16512 275 MFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTN 354 (815)
Q Consensus 275 ~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~ 354 (815)
.+++-.-++.++.+++..+.+.+...++ ..+-|..+.++..+.++.+.+. ...++
T Consensus 247 ~l~gG~~~~~~~~~~~~~~~~~~~~~g~------------------------T~~gnPla~aaa~a~L~~l~~~-~~~~~ 301 (387)
T d1vefa1 247 ALGGGVPLGVAVMREEVARSMPKGGHGT------------------------TFGGNPLAMAAGVAAIRYLERT-RLWER 301 (387)
T ss_dssp GGGTTSSCEEEEEEHHHHHTSCTTSSCC------------------------SSTTCHHHHHHHHHHHHHHHHH-TTHHH
T ss_pred cCCCCccccccccceeeeeccccCCccc------------------------cCCCCcchhhhcccchhhcccc-cccch
Confidence 6652111577777777765543332211 1133677777777888887653 22388
Q ss_pred HHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchh
Q psy16512 355 AFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGS 434 (815)
Q Consensus 355 ~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~ 434 (815)
..++.+++.+.|+++.+ +.+.-+ ...|.+..+.+.+.... .+.+.+.++|+.+....
T Consensus 302 v~~~g~~l~~~L~~l~~----~~v~~v--------rg~Gl~~~ie~~~~~~~-----~~~~~~~~~g~l~~~~g------ 358 (387)
T d1vefa1 302 AAELGPWFMEKLRAIPS----PKIREV--------RGMGLMVGLELKEKAAP-----YIARLEKEHRVLALQAG------ 358 (387)
T ss_dssp HHHHHHHHHHHHHTSCC----TTEEEE--------EEETTEEEEEESSCSHH-----HHHHHHHHHCEECEESS------
T ss_pred HhhhhHHHHHHHHhcCC----CceEEE--------eecceEEEEEEeCCchH-----HHHHHHHHCCCeEEecC------
Confidence 88999999999988743 333212 23467888888654322 36666677777654210
Q ss_pred hhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 435 CQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 435 ~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+.+|+++.+..|++|++.++++|++.+
T Consensus 359 ---------------------------------~~~ir~~Ppl~it~~~ld~~~~~i~~aL 386 (387)
T d1vefa1 359 ---------------------------------PTVIRFLPPLVIEKEDLERVVEAVRAVL 386 (387)
T ss_dssp ---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------CCEEEEECCccCCHHHHHHHHHHHHHHh
Confidence 2679999988899999999999999875
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=8.5e-10 Score=120.53 Aligned_cols=345 Identities=12% Similarity=0.077 Sum_probs=196.8
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +--.+.+.+++.+++....+..+.. ...+. ..++-+.+.+++.-+.. +.+.|++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~--~~~~~----~~~la~~l~~~~p~~~~-~~v~f~~sG 110 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV--LAYEP----YLELCEIMNQKVPGDFA-KKTLLVTTG 110 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT--EECHH----HHHHHHHHHHHSSCSSC-EEEEEESSH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc--ccCcH----HHHHHHHHHhhhhhccc-ceeeeeccc
Confidence 34567765542 3346888888887765432222111 11222 45666777777753322 248999999
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhccc-------------eEEcCc---hhhh--cchhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTNQ-------------IYSFSV---DDAR--NMLNEFKESQ 192 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~g-------------~v~~~~---~~~~--~~~~~~~~l~ 192 (815)
++|+..++....- .+..+|.....|.. ............ .....+ .+.. ........+.
T Consensus 111 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (425)
T d1sffa_ 111 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIF 190 (425)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHH
T ss_pred cchhhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHH
Confidence 9999888766542 33336666655443 333332221111 111111 1000 0000000000
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEeccccc-CCCC----CCCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYC-GSNM----LDLKQH 263 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~-g~~~----~dl~~~ 263 (815)
.......+..+|++..+....|...| ++.|.++|+ ++|+++|+|+++.. |-.- ...-..
T Consensus 191 -~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~-----------~~gillI~DEV~tG~gR~g~~~a~~~~gv 258 (425)
T d1sffa_ 191 -KNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCD-----------EHGIMLIADEVQSGAGRTGTLFAMEQMGV 258 (425)
T ss_dssp -HHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHH-----------HHTCEEEEECTTTTTTTTSSSSGGGGTTS
T ss_pred -HhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHH-----------HcCceEEeccccccCCCcchhhHHHhcCC
Confidence 01111234678888878777888765 445677777 99999999998763 3211 111123
Q ss_pred CCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHH
Q psy16512 264 QPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFD 343 (815)
Q Consensus 264 ~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 343 (815)
.||+++ +.|.+|+-.-+|++++++++.+.+.+...++ ..+-|..+++++.++|+
T Consensus 259 ~PDi~~--~gK~l~gG~P~~av~~~~~i~~~~~~~~~~~------------------------T~~gnpl~~aaa~a~L~ 312 (425)
T d1sffa_ 259 APDLTT--FAKSIAGGFPLAGVTGRAEVMDAVAPGGLGG------------------------TYAGNPIACVAALEVLK 312 (425)
T ss_dssp CCSEEE--ECGGGGTSSCCEEEEEEHHHHTTSCTTSBCC------------------------SSSSCHHHHHHHHHHHH
T ss_pred Ccccee--cccccCCCcceEEEEEcHHHHHhhCCCCCCC------------------------CCCcCHHHHHHHHHHHH
Confidence 689877 5587763222899999999876554332111 11345677777778888
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCC-CCcc---CHHHHHHhhhc
Q psy16512 344 TMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKD-GTYY---GYSEVQNLANL 419 (815)
Q Consensus 344 ~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~-~~~~---~~~~v~~~l~~ 419 (815)
.+.+. ...++...+.+++.+.|+++... .|.+.-+ ...|.++.+.+.... .... -...+.+.+.+
T Consensus 313 ~i~~~-~~~~~~~~~g~~l~~~l~~~~~~--~~~v~~v--------rg~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~ 381 (425)
T d1sffa_ 313 VFEQE-NLLQKANDLGQKLKDGLLAIAEK--HPEIGDV--------RGLGAMIAIELFEDGDHNKPDAKLTAEIVARARD 381 (425)
T ss_dssp HHHHT-THHHHHHHHHHHHHHHHHHHHHT--CTTEEEE--------EEETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHH
T ss_pred HHHHh-hhhhhhhhhhhhhhhhhhhhHhh--CCceEEE--------EccccEEEEEEeccCccCCccHHHHHHHHHHHHH
Confidence 87654 12277777777777776554111 1332222 234778888875321 1111 12346677788
Q ss_pred CCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 420 KKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 420 ~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
+||.+.++. ...+.||+++.+..|++||++++++|++.|.+
T Consensus 382 ~Gvl~~~~g-------------------------------------~~~n~i~~~PpL~it~~eid~~l~~l~~al~e 422 (425)
T d1sffa_ 382 KGLILLSCG-------------------------------------PYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 422 (425)
T ss_dssp TTEECEEES-------------------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeccC-------------------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 999876421 11378999999889999999999999998754
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=8.4e-12 Score=138.95 Aligned_cols=320 Identities=13% Similarity=0.081 Sum_probs=169.3
Q ss_pred HHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhccCCCc----------EEEecCCCcchhhHHHHhhccceEEc
Q psy16512 107 IDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEFNEGS----------FIYLTDNHTSVLGMRELVKTNQIYSF 176 (815)
Q Consensus 107 ~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~~~gd----------vv~~~~~h~s~~~~~~~~~~~g~v~~ 176 (815)
+.++++++++++|.+. +++++++|+|+.+++.++. ++|+ ++.+...|..........+.. ...+
T Consensus 76 ~~~le~~~a~l~G~~~----~~~~~sGt~A~~~a~~~~~-~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~-~~~~ 149 (467)
T d2v1pa1 76 YYALAESVKNIFGYQY----TIPTHQGRGAEQIYIPVLI-KKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCT-VRNV 149 (467)
T ss_dssp HHHHHHHHHHHTCCSE----EEEECSSTTTHHHHHHHHH-HHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCE-EEEC
T ss_pred HHHHHHHHHHHHCCCE----EEECCCCHHHHHHHHHHHh-hccceEecCCCCcEEEEecccccccHHHHHHcCCe-eeec
Confidence 7889999999999864 7899999999999999886 4444 222222332222222222211 2222
Q ss_pred Cc------------hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCc-cccCh---HHHHHHhhccccccccccCC
Q psy16512 177 SV------------DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSG-TKYPL---SWCNTVHRNHVFKKHFKCSR 240 (815)
Q Consensus 177 ~~------------~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG-~~~~l---~~I~~l~~~~~~~~~~~~~~ 240 (815)
+. ...++++.+++++. ....+.+.++++...+|..| ..+|+ ++|.++|+ +
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~-----------~ 215 (467)
T d2v1pa1 150 YIKEAFDTGVRYDFKGNFDLEGLERGIE---EVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK-----------K 215 (467)
T ss_dssp BCTTTTCTTSCCTTTTCBCHHHHHHHHH---HHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHH-----------H
T ss_pred ccccccccccccccccCCCHHHHHHHHh---hcCccccceeeecceeeccccccCCHHHHHHHHHHHH-----------H
Confidence 21 22455666665443 22234478888888877664 45554 45677777 9
Q ss_pred CCeEEEEecccccCCCC-----------CCCC------CCCCcEEEEccccccccCCcceEEEEecccccccCcccccCc
Q psy16512 241 SNCFVLLDAATYCGSNM-----------LDLK------QHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGG 303 (815)
Q Consensus 241 ~gi~vivD~a~~~g~~~-----------~dl~------~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~ 303 (815)
||+++|+|+++..+... .... ...+|++.+|.||.+++|. .|++..+++.+..........+
T Consensus 216 ~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~-gg~i~~~~~~~~~~~~~~~~~~ 294 (467)
T d2v1pa1 216 YDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM-GGLLCMKDDSFFDVYTECRTLC 294 (467)
T ss_dssp TTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS-CEEEEECSGGGHHHHHHHHHHH
T ss_pred cCCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCC-ceeEEecchhhhhHHHhhcccc
Confidence 99999999998654210 0000 0137999999999888554 4777776654422111000000
Q ss_pred eEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHhccccCCCCcEEEcC
Q psy16512 304 TVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF-TNAFELSQYTYFYFKQLSYSNGQPLVELYH 382 (815)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~-~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~ 382 (815)
.. . ......+......+.++...+.. ...... ++..++.+++.+.|.+. +..+..
T Consensus 295 ~~-----~----------~~~~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~-------~~~v~~ 350 (467)
T d2v1pa1 295 VV-----Q----------EGFPTYGGLEGGAMERLAVGLYD--GMNLDWLAYRIAQVQYLVDGLEEI-------GVVCQQ 350 (467)
T ss_dssp HH-----T----------TSSCCCCCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHT-------TCCEEE
T ss_pred cc-----c----------ccCcchhhhHHHHHHHHHHHhHH--hhhHHHHHHHHHHHHHHHHHHHhc-------CCcccC
Confidence 00 0 00011122233333333222222 121223 66778889999999886 233322
Q ss_pred CCCCCCCCcccceEEEEE----ecCCCCcc-CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccC
Q psy16512 383 DTDYGESKYQGNIVNFNL----LHKDGTYY-GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICG 457 (815)
Q Consensus 383 ~~~~~~~~~~~~i~~f~~----~~~~~~~~-~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~ 457 (815)
.. .+.+.... +....... ....+.+.+.+.||....... .. +.... ..+
T Consensus 351 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~Gi~~~~~g~-----~~--~~~~~-----------~~~ 404 (467)
T d2v1pa1 351 AG--------GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGS-----FL--LGRDP-----------KTG 404 (467)
T ss_dssp EC--------SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESH-----HH--HCBCT-----------TTC
T ss_pred CC--------ccceeecchhhcCCcchhhhhhHHHHHHHHHHcCCeeecccc-----cc--ccccc-----------ccC
Confidence 21 11122211 11111111 122345566788875422110 00 00000 000
Q ss_pred CcccccCCCCceEEEEeccCC-CCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 458 DDKDIIDGKPTGSIRISYGHA-SNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 458 ~~~~~~~~~~~g~iRvs~g~~-~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
.. .-.....+|+++... .|+||||+++++|++++.+....
T Consensus 405 ~~----~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i 445 (467)
T d2v1pa1 405 KQ----LPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANI 445 (467)
T ss_dssp SB----CCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGC
T ss_pred Cc----cCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 00 001236799998653 49999999999999998665544
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.5e-09 Score=118.34 Aligned_cols=354 Identities=12% Similarity=0.071 Sum_probs=204.3
Q ss_pred cccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHH
Q psy16512 42 IKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKIL 115 (815)
Q Consensus 42 v~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la 115 (815)
+...-|.+|... ++..|+|..+ -+--.+++.+++.+++....+..+... .... ..++.+++.
T Consensus 29 i~~~~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~--~~~~----~~~l~~~l~ 96 (429)
T d1s0aa_ 29 VVSAEGCELILS------DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI--THAP----AIELCRKLV 96 (429)
T ss_dssp EEEEEBTEEEET------TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSE--ECHH----HHHHHHHHH
T ss_pred eEEeECCEEEEC------CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCc--cchH----HHHHHHHHH
Confidence 444455554443 2345777433 223458888888887765332222211 1111 445566777
Q ss_pred hHcCCCCCceeEEecCCchhhHHHHHhhhcc-----CCC--cEEEecCCC-cchhhHHHHhhcc-------c-------e
Q psy16512 116 QYFNTDSDHYSVIFTSGATSAIKTVSEYFEF-----NEG--SFIYLTDNH-TSVLGMRELVKTN-------Q-------I 173 (815)
Q Consensus 116 ~~~g~~~~~~~iv~t~g~t~al~~~~~al~~-----~~g--dvv~~~~~h-~s~~~~~~~~~~~-------g-------~ 173 (815)
+......+. +.|+.++++|++.++..... ..+ .+|.....| ............. + .
T Consensus 97 ~~~~~~~~~--v~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~ 174 (429)
T d1s0aa_ 97 AMTPQPLEC--VFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLF 174 (429)
T ss_dssp HHSCTTCCE--EEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEE
T ss_pred hhhccCcce--eeeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccc
Confidence 777655444 89999999999888765531 122 266665543 3333322222110 0 1
Q ss_pred EEcCc------hhhhcchhhhhhhhhhhhhcCCCccEEEEeccc-CCCcccc-C---hHHHHHHhhccccccccccCCCC
Q psy16512 174 YSFSV------DDARNMLNEFKESQENVENMRHSNSLFVYPAES-NFSGTKY-P---LSWCNTVHRNHVFKKHFKCSRSN 242 (815)
Q Consensus 174 v~~~~------~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~-n~tG~~~-~---l~~I~~l~~~~~~~~~~~~~~~g 242 (815)
.+... .+..+...+++. .....++..+|++.-+. +..|... | ++.|.++|+ ++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~-----------~~g 239 (429)
T d1s0aa_ 175 APAPQSRMDGEWDERDMVGFARL----MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICD-----------REG 239 (429)
T ss_dssp ECCCCSBC-CCCCGGGGHHHHHH----HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHH-----------HHT
T ss_pred ccccccccccccchhhhhhhhhh----hhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHH-----------HcC
Confidence 11111 011122222221 11223557777777554 5555644 4 556777787 999
Q ss_pred eEEEEeccccc-CCCCC----CCCCCCCcEEEEccccccccC-CcceEEEEecccccccCcccccCceEEEEecCCcccc
Q psy16512 243 CFVLLDAATYC-GSNML----DLKQHQPDFISISFYKMFGYP-TGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHI 316 (815)
Q Consensus 243 i~vivD~a~~~-g~~~~----dl~~~~~D~vv~S~~K~~g~p-~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~ 316 (815)
+++|+|+++.. |..-. ..-...||+++.+ |.+++- .-+|++++++++.+.+.+...+..
T Consensus 240 illI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~------------- 304 (429)
T d1s0aa_ 240 ILLIADEIATGFGRTGKLFACEHAEIAPDILCLG--KALTGGTMTLSATLTTREVAETISNGEAGCF------------- 304 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHHHHHHHTSTTSSC-------------
T ss_pred cceehhhccccccccccccccccceecccccccc--cccccccccccchhhHHHHHhccCCCCCcce-------------
Confidence 99999998762 22111 1112358997765 755421 227899999887654422110000
Q ss_pred cccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceE
Q psy16512 317 KKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIV 396 (815)
Q Consensus 317 ~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~ 396 (815)
......+-|..+++++.+.|+.+.+. .-.+++.++.+++.+.|.++.. .+.+.-+ ...|.+.
T Consensus 305 ------~~~~T~~gnp~~~aaa~a~L~~i~~~-~~~~~~~~~g~~l~~~L~~l~~---~~~v~~v--------rg~Gl~~ 366 (429)
T d1s0aa_ 305 ------MHGPTFMGNPLACAAANASLAILESG-DWQQQVADIEVQLREQLAPARD---AEMVADV--------RVLGAIG 366 (429)
T ss_dssp ------SCCCTTTTCHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHGGGGG---CTTEEEE--------EEETTEE
T ss_pred ------eecCCCCCCcccchhhhccccccccc-cccchhhHHHHHHHHHHHHhcc---CCceEEE--------eecccEE
Confidence 00111234567777777888877654 1238888899999999977632 1333211 2347788
Q ss_pred EEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEecc
Q psy16512 397 NFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYG 476 (815)
Q Consensus 397 ~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g 476 (815)
.+.+..... ...+.+.+.++|+.+++. ++.||+++.
T Consensus 367 ~~e~~~~~~----~~~~~~~~~~~Gl~~~~~----------------------------------------g~~i~~~Pp 402 (429)
T d1s0aa_ 367 VVETTHPVN----MAALQKFFVEQGVWIRPF----------------------------------------GKLIYLMPP 402 (429)
T ss_dssp EEEESSCBC----HHHHHHHHHHTTEECCCB----------------------------------------TTEEEECCC
T ss_pred EEEecCccc----HHHHHHHHHHCCcEEEec----------------------------------------CCEEEEeCC
Confidence 888765432 335788888999987542 257999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCcc
Q psy16512 477 HASNWDDVKYFLSFLNQYFLQQADF 501 (815)
Q Consensus 477 ~~~t~edi~~lv~~L~~~~~~~~~~ 501 (815)
+-.|++|||+++++|++.+.+..-+
T Consensus 403 l~it~~eid~~~~~l~~al~e~~~~ 427 (429)
T d1s0aa_ 403 YIILPQQLQRLTAAVNRAVQDETFF 427 (429)
T ss_dssp TTCCHHHHHHHHHHHHHHTSSGGGB
T ss_pred cCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 8889999999999999988776544
|
| >d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Parvulin 10 (rotamase C) species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=4.2e-12 Score=106.80 Aligned_cols=48 Identities=40% Similarity=0.664 Sum_probs=45.5
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGK 56 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~ 56 (815)
.+||+|||+.+++|+|+|++++|.+++|++|+ ||+|+||||||++.++
T Consensus 44 ~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~------pi~t~~G~HIikv~dr 91 (92)
T d1jnsa_ 44 KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTG------PLHTQFGYHIIKVLYR 91 (92)
T ss_dssp TTGGGCCEEETTSSCHHHHHHHHHSCTTCCEE------EEEETTEEEEEEEECC
T ss_pred chhhhhceeeHhhhhhHHHHHHHhCCCCCcCC------CEEeCCeEEEEEEEeC
Confidence 47999999999999999999999999999998 8899999999999875
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=2.1e-09 Score=117.37 Aligned_cols=347 Identities=9% Similarity=0.036 Sum_probs=197.2
Q ss_pred cchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCC-
Q psy16512 73 YSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEG- 149 (815)
Q Consensus 73 ~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~g- 149 (815)
..+.+.+.+...+....-..| .+..+..-+.+-+.+..|+++.|.+-.+ .-.-.|+|++...++.+... +.+
T Consensus 77 y~P~v~~~~~~~~TaYTPYQP---aEiSQG~LQalfEfQtmi~eLTGMdvaN--aS~yDGatA~aeA~~ma~r~~~~~~~ 151 (471)
T d1wyub1 77 YNPKLHEEAARLFADLHPYQD---PRTAQGALRLMWELGEYLKALTGMDAIT--LEPAAGAHGELTGILIIRAYHEDRGE 151 (471)
T ss_dssp CCCHHHHHHHHTTSSCCTTSC---GGGCHHHHHHHHHHHHHHHHHHTCSEEE--CCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcchhhhHHHHHhccCCCCC---HHHHHHHHHHHHHHHHHHHHHhCCCccc--cccchHHHHHHHHHHHHHHHhhhccc
Confidence 456777766543221111122 1223333344779999999999987543 33346666655555444321 122
Q ss_pred ----cEEEecCCCcchhh-HHHHhhccc-eEEcCchhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccChHHH
Q psy16512 150 ----SFIYLTDNHTSVLG-MRELVKTNQ-IYSFSVDDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYPLSWC 223 (815)
Q Consensus 150 ----dvv~~~~~h~s~~~-~~~~~~~~g-~v~~~~~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~l~~I 223 (815)
.++.....|..... ......... .++.+..+..+.+.... .....+..+++.++++.-+.....+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~v~v~~p~~~g~~e~~~~~~ 224 (471)
T d1wyub1 152 GRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKR-------ELGPHVAALMLTNPNTLGLFERRILEI 224 (471)
T ss_dssp TTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHH-------HCSTTEEEEEECSSCTTSCCCTTHHHH
T ss_pred ccccccccCCcccccceeeeeecccceeecccccccccccchhhhh-------hhhccccceeeccCCCcccccchhhhh
Confidence 14444444444332 222211111 23333333444444333 334668889998887775555568889
Q ss_pred HHHhhccccccccccCCCCeEEEEecccccCCC-CCCCCCCCCcEEEEccccccccCC-----cceEEEEecccccccCc
Q psy16512 224 NTVHRNHVFKKHFKCSRSNCFVLLDAATYCGSN-MLDLKQHQPDFISISFYKMFGYPT-----GLGALIVKQKSAHVLNK 297 (815)
Q Consensus 224 ~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g~~-~~dl~~~~~D~vv~S~~K~~g~p~-----G~G~l~~~~~~~~~l~~ 297 (815)
+++++ +.+..+++|++...... .......+.|+++...++.||.|. |+|++.+++++...+.-
T Consensus 225 ~~~~h-----------~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PG 293 (471)
T d1wyub1 225 SRLCK-----------EAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPV 293 (471)
T ss_dssp HHHHH-----------HHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCS
T ss_pred HHHHH-----------hccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCC
Confidence 99999 67888888876443221 122223578999998888776552 48999999998877654
Q ss_pred ccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHHHHHhccccCCC
Q psy16512 298 TFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSF--TNAFELSQYTYFYFKQLSYSNGQ 375 (815)
Q Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~--~~~~~l~~~l~~~L~~l~~~~~~ 375 (815)
.+.+.+...... ...+....+|-..+|.+.+...++...+.++-..|... +++...+.|+.++|+..
T Consensus 294 RiV~~~~~~~~~-----~~~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~------ 362 (471)
T d1wyub1 294 PLVERGEEGFYL-----DFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK------ 362 (471)
T ss_dssp CEEEECSSCEEE-----ECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred ceecCCCccccc-----cCCCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhc------
Confidence 443322111111 01123334455556666554444444455554444332 88889999999999653
Q ss_pred CcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCc
Q psy16512 376 PLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHI 455 (815)
Q Consensus 376 p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 455 (815)
++++..+. ..+--|.+.... .++..++.+.|.++||......+ |
T Consensus 363 -G~~~~~~~--------~ff~EFvv~~~~--~~~~~~i~k~L~~~G~~~~~~~~--p----------------------- 406 (471)
T d1wyub1 363 -GYRVPYDG--------PSMHEFVAQPPE--GFRALDLAKGLLELGFHPPTVYF--P----------------------- 406 (471)
T ss_dssp -TCBCSSCS--------SCCSCEEEBCST--TCCHHHHHHHHHHTTCCCCEESC--S-----------------------
T ss_pred -CceeccCc--------ceeeEEeecCCC--CCCHHHHHHHHHHcCCCCCcccC--c-----------------------
Confidence 77765432 112223332222 13345688888889986422111 1
Q ss_pred cCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhhc
Q psy16512 456 CGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQQ 498 (815)
Q Consensus 456 c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~~ 498 (815)
....+.+-|++.--+|++|||+|+++|++++++.
T Consensus 407 ---------~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~ 440 (471)
T d1wyub1 407 ---------LIVKEALMVEPTETEAKETLEAFAEAMGALLKKP 440 (471)
T ss_dssp ---------TTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSC
T ss_pred ---------CCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 1113568889888889999999999999987664
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.12 E-value=2.5e-09 Score=116.70 Aligned_cols=332 Identities=11% Similarity=0.013 Sum_probs=182.8
Q ss_pred chhhhhhhhcc------cccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHHHhHcCCCCCceeEEecCCc
Q psy16512 60 KDICYLDYTGA------GVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKILQYFNTDSDHYSVIFTSGA 133 (815)
Q Consensus 60 ~~~iyLd~a~~------~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~la~~~g~~~~~~~iv~t~g~ 133 (815)
++..|+|..+. +.-.+++.+++.+++....+.... ... ...+.+.+.+.... .+ .+.|++++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~-----~~~----~~~la~~~~~~~~~-~~--~v~f~~sG 117 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAP-----CAL----ENVLAEMVNDAVPS-IE--MVRFVNSG 117 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSC-----CHH----HHHHHHHHHHHSTT-CS--EEEEESSH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccc-----hhH----HHHHHHHHHhhCCc-cc--cccccCCc
Confidence 45667775443 234588888888877642221111 111 33455566666543 23 38999999
Q ss_pred hhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHh----hccc--------------eEEcCchhhhcchhhhhhhh
Q psy16512 134 TSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELV----KTNQ--------------IYSFSVDDARNMLNEFKESQ 192 (815)
Q Consensus 134 t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~----~~~g--------------~v~~~~~~~~~~~~~~~~l~ 192 (815)
++|++.++..... ++..||.....|.. ........ ...+ ..... ..+++.+++.++
T Consensus 118 seA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~~~~le~~~~ 194 (427)
T d2gsaa_ 118 TEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP---YNDLEAVKALFA 194 (427)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC---TTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC---cchHHHHHHHHH
Confidence 9999998876531 22226665544432 21111000 0000 11111 123333443332
Q ss_pred hhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEEEecccccC-CCCC---CCCCCC
Q psy16512 193 ENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATYCG-SNML---DLKQHQ 264 (815)
Q Consensus 193 ~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~~g-~~~~---dl~~~~ 264 (815)
....+..+|++..+....|.+.| ++.|.++|+ ++|+++|+|+++... .... +.-...
T Consensus 195 ----~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~-----------~~~~llI~DEv~tG~r~g~~~~~~~~gi~ 259 (427)
T d2gsaa_ 195 ----ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITL-----------EHDALLVFDEVMTGFRIAYGGVQEKFGVT 259 (427)
T ss_dssp ----TSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHH-----------HTTCEEEEECTTTBTTTBTTCHHHHTTCC
T ss_pred ----hCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHH-----------HhceeeeeccccccceecccchHHhcCCC
Confidence 22345778888888888899888 888899998 999999999998532 1100 001235
Q ss_pred CcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHH
Q psy16512 265 PDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDT 344 (815)
Q Consensus 265 ~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~ 344 (815)
||+++++ |.+|+-.-+|++++++++.+.+.+.- .. ......+.|..+++++.++++.
T Consensus 260 PDi~~~g--K~lggG~p~~a~~~~~~i~~~~~~~~---~~------------------~~~~T~~gnpla~AAala~Le~ 316 (427)
T d2gsaa_ 260 PDLTTLG--KIIGGGLPVGAYGGKREIMQLVAPAG---PM------------------YQAGTLSGNPLAMTAGIKTLEL 316 (427)
T ss_dssp CSEEEEC--GGGGTTSCCEEEEECHHHHTTBTTTS---SB------------------CCCCTTTTCHHHHHHHHHHHHH
T ss_pred HHHHhhh--hccCCCcceeeeeehHHHHHHhcccC---CC------------------cCCCCCCCCchhhHHHHHhhHH
Confidence 8998776 54442111577888888876554310 00 0111224566777777778777
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCC------CccC---HHHHHH
Q psy16512 345 MEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDG------TYYG---YSEVQN 415 (815)
Q Consensus 345 l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~------~~~~---~~~v~~ 415 (815)
+.+.. ..+++.++.+++.+.|+++....+.+. .+. ..++++.+.+..... ...+ ...+.+
T Consensus 317 i~~~~-l~~~~~~~g~~l~~~L~~l~~~~~~~~-~v~---------~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~ 385 (427)
T d2gsaa_ 317 LRQPG-TYEYLDQITKRLSDGLLAIAQETGHAA-CGG---------QVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHR 385 (427)
T ss_dssp HTSTT-HHHHHHHHHHHHHHHHHHHHHHTTCCC-EEE---------EETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHH
T ss_pred hhhhh-HHhhhhHHHHHHHHHHHHHHhhcCCCc-EEc---------ccCCeEEEEEeccCCCCHHHhhcccHHHHHHHHH
Confidence 76531 227788888888887766521111111 111 113454554422110 0011 123555
Q ss_pred hhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHH
Q psy16512 416 LANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYF 495 (815)
Q Consensus 416 ~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~ 495 (815)
.+.++||.++++.. ..+- +....|++|||++++++++++
T Consensus 386 ~ll~~Gv~l~p~~~---------------------------------------~~~~--~~l~~Te~dId~~l~al~~al 424 (427)
T d2gsaa_ 386 GMLEQGIYLAPSQF---------------------------------------EAGF--TSLAHTEEDIDATLAAARTVM 424 (427)
T ss_dssp HHHHTTEECCSSTT---------------------------------------SCEE--CCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEECCCCC---------------------------------------ccee--CCCCCCHHHHHHHHHHHHHHH
Confidence 66788998765311 1111 334569999999999999987
Q ss_pred h
Q psy16512 496 L 496 (815)
Q Consensus 496 ~ 496 (815)
.
T Consensus 425 ~ 425 (427)
T d2gsaa_ 425 S 425 (427)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Mitotic rotamase PIN1, domain 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.6e-11 Score=108.69 Aligned_cols=47 Identities=38% Similarity=0.586 Sum_probs=44.4
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEG 55 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved 55 (815)
.+||+|||+..++|+|+|++++|.|++|+||. ||+|+||||||++.|
T Consensus 73 ~~gG~lg~~~~~~l~~~f~~~~~~l~~GeiS~------pi~t~~G~HIikv~d 119 (119)
T d1pina2 73 KARGDLGAFSRGQMQKPFEDASFALRTGEMSG------PVFTDSGIHIILRTE 119 (119)
T ss_dssp GGTTEEEEECTTSSCHHHHHHHHHCCTTCBCC------CEECSSCEEEEEECC
T ss_pred cccccccccccchHHHHHHHHHhcCCCCCcCC------cEEeCCcEEEEEEeC
Confidence 47999999999999999999999999999998 899999999999864
|
| >d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Mitotic rotamase PIN1, domain 2 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.08 E-value=1.2e-11 Score=109.50 Aligned_cols=46 Identities=33% Similarity=0.529 Sum_probs=43.5
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeec
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVE 54 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ve 54 (815)
-+||+|||+.+++|+|+|++++|.|++|+||+ ||+|+||||||++.
T Consensus 74 ~~GG~lGw~~~~~l~~~f~~~~~~l~~G~is~------pi~t~~G~HIikvt 119 (120)
T d1j6ya_ 74 KRGGDLGSFGRGQMQKPFEEATYALKVGDISD------IVDTDSGVHIIKRT 119 (120)
T ss_dssp HTCSEEEECSSSSSCTHHHHHHHHCCSSSCCS------CEEETTEEECCCSC
T ss_pred ccccccccchhhhcChHHHHHHHcCCCCCcCC------CEEeCCeeEEEEEe
Confidence 36999999999999999999999999999998 89999999999874
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.08 E-value=1.1e-08 Score=112.50 Aligned_cols=347 Identities=13% Similarity=0.146 Sum_probs=192.1
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccC-CCCh-hhhhhhhhhhHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSH-PHGN-SVLSDFCVSEIDQMRT 112 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~n-p~s~-~~~~~~~~~~~~~~r~ 112 (815)
.++..-|-++..+ ++..|+|..+ -+--.+++.+++.+++....+.+ +... ...... .+++.+
T Consensus 38 ~~~~g~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~----a~~lae 107 (461)
T d1ohwa_ 38 NYEESRGNYLVDV------DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENF----VEKLRE 107 (461)
T ss_dssp CTTTCBBTEEEBT------TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTH----HHHHHH
T ss_pred EEEEeecCEEEEC------CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHH----HHHHHH
Confidence 4455566665543 3445666432 13345677777766554322211 1111 112222 455666
Q ss_pred HHHhHcCCCCCceeEEecCCchhhHHHHHhhhcc--------------------------CCCc--EEEecCC-Ccchhh
Q psy16512 113 KILQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--------------------------NEGS--FIYLTDN-HTSVLG 163 (815)
Q Consensus 113 ~la~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--------------------------~~gd--vv~~~~~-h~s~~~ 163 (815)
.+.+......+. ++|++++++|++.++..... ..++ ||..... |.....
T Consensus 108 ~l~~~~~~~~~~--v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~ 185 (461)
T d1ohwa_ 108 SLLSVAPKGMSQ--LITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185 (461)
T ss_dssp TGGGGCCTTCCE--EEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHH
T ss_pred HHHhhhccCcce--eeeecchhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcc
Confidence 666665544444 99999999999988765420 1223 5555544 444433
Q ss_pred HHHHhhcc----------c--eEEcCc--------------hhhhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccc
Q psy16512 164 MRELVKTN----------Q--IYSFSV--------------DDARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTK 217 (815)
Q Consensus 164 ~~~~~~~~----------g--~v~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~ 217 (815)
........ . ..+... ......+.+++.+... .....++.+|++..+....|.+
T Consensus 186 a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iAavivEPi~g~~G~~ 264 (461)
T d1ohwa_ 186 CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY-RKKKKTVAGIIVEPIQSEGGDN 264 (461)
T ss_dssp HHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHH-HHTTCCEEEEEECSSBCTTTCB
T ss_pred cccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHHHHHHHHH-HhCCCccceeeecccccccccc
Confidence 33322111 0 111100 0011122223222111 1123457889999888888887
Q ss_pred cC----hHHHHHHhhccccccccccCCCCeEEEEecccc-cCCC--CCCCCCC----CCcEEEEccccccccCCcceEEE
Q psy16512 218 YP----LSWCNTVHRNHVFKKHFKCSRSNCFVLLDAATY-CGSN--MLDLKQH----QPDFISISFYKMFGYPTGLGALI 286 (815)
Q Consensus 218 ~~----l~~I~~l~~~~~~~~~~~~~~~gi~vivD~a~~-~g~~--~~dl~~~----~~D~vv~S~~K~~g~p~G~G~l~ 286 (815)
.+ ++.|.++|+ ++|+++|+|+++. +|.. ......+ .+|++++ .|.++ | |+..
T Consensus 265 ~~~~~fl~~lr~lc~-----------~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~--gK~l~---~-g~~~ 327 (461)
T d1ohwa_ 265 HASDDFFRKLRDISR-----------KHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTF--SKKMM---T-GGFF 327 (461)
T ss_dssp CCCHHHHHHHHHHHH-----------HTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEEEE--CGGGS---S-EEEE
T ss_pred CchhhHHHHHHHHHH-----------hhCcceeccccccccccccccccccccccccCchhhhh--hhccc---c-cccc
Confidence 66 555777777 9999999999875 3321 1111111 3788754 48666 2 4444
Q ss_pred EecccccccCcccccCceEEEEecCCcccccccCccccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy16512 287 VKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGLFEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYF 366 (815)
Q Consensus 287 ~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L 366 (815)
....+ ....+.. ......-+..+.+++.++++.+.+. ...+++.++.+++.+.|
T Consensus 328 ~~~~~-~~~~~~~------------------------~~~T~~g~p~~~aaa~a~l~~i~~~-~l~~~~~~~g~~l~~~l 381 (461)
T d1ohwa_ 328 HKEEF-RPNAPYR------------------------IFNTWLGDPSKNLLLAEVINIIKRE-DLLSNAAHAGKVLLTGL 381 (461)
T ss_dssp ECGGG-SCSSTTS------------------------SCCSCSSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred ccccc-ccccccc------------------------cccccccccccchhhcccchhhhhh-hHHHHHHHHHHHHHHHH
Confidence 33222 1111110 0111234556777777888887654 12378888888888888
Q ss_pred Hhcc--ccCCCCcEEEcCCCCCCCCCcccceEEEEEecCCCCccCHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHH
Q psy16512 367 KQLS--YSNGQPLVELYHDTDYGESKYQGNIVNFNLLHKDGTYYGYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDI 444 (815)
Q Consensus 367 ~~l~--~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~ 444 (815)
+++. |++ .+.-+ ...|.++.+.+++... ...+.+.+.++|+.+....
T Consensus 382 ~~l~~~~~~---~i~~v--------rG~Gl~~~ie~~~~~~----~~~i~~~~~~~Gll~~~~~---------------- 430 (461)
T d1ohwa_ 382 LDLQARYPQ---FISRV--------RGRGTFCSFDTPDESI----RNKLISIARNKGVMLGGCG---------------- 430 (461)
T ss_dssp HHHHHHCTT---TCEEE--------EEETTEEEEECSSHHH----HHHHHHHHHHTTEECEEET----------------
T ss_pred HHHHhhCCC---ceEEe--------eeeeEEEEEEcCCHHH----HHHHHHHHHHCCeEEeeCC----------------
Confidence 7762 111 11111 2347788888764321 2247788888999875410
Q ss_pred HHHHHhhcCCccCCcccccCCCCceEEEEeccCCCCHHHHHHHHHHHHHHHhh
Q psy16512 445 TIKFHFQQGHICGDDKDIIDGKPTGSIRISYGHASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 445 ~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~~~t~edi~~lv~~L~~~~~~ 497 (815)
...||+.+.+..|++|++.++++|++++.+
T Consensus 431 -----------------------~~~ir~~PpL~it~~eid~~~~~l~~~l~e 460 (461)
T d1ohwa_ 431 -----------------------DKSIRFRPTLVFRDHHAHLFLNIFSDILAD 460 (461)
T ss_dssp -----------------------TTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence 257999999889999999999999998764
|
| >d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Porin chaperone SurA, PPIase domains species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=2.7e-11 Score=105.31 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=46.9
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeeccccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKNH 58 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~~ 58 (815)
-.||+|||+..++|+++|++++|.|++|++|+ ||+|++||||+++++.+.
T Consensus 58 ~~gG~lgw~~~~~l~~~~~~~~~~l~~GeiS~------pi~t~~G~hIikl~~~r~ 107 (108)
T d1m5ya3 58 NQGGDLGWATPDIFDPAFRDALTRLNKGQMSA------PVHSSFGWHLIELLDTRN 107 (108)
T ss_dssp GGTTEEEEECGGGSCHHHHHHHHTCCTTCBCC------CEECSSCEEEEEEEEEEE
T ss_pred cccccccccccccccHHHHHHHHhCCCCCCCc------cEEeCCEEEEEEEEEEec
Confidence 36999999999999999999999999999998 889999999999988764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.01 E-value=4.1e-08 Score=107.14 Aligned_cols=361 Identities=11% Similarity=0.038 Sum_probs=195.4
Q ss_pred CcccCCCcceeeeccccccchhhhhhhhc------ccccchhhHHHHHHHHhhccccCCCChhhhhhhhhhhHHHHHHHH
Q psy16512 41 PIKTKFGYHIIMVEGKNHLKDICYLDYTG------AGVYSQSQMNQTIEQLKENIFSHPHGNSVLSDFCVSEIDQMRTKI 114 (815)
Q Consensus 41 pv~t~fGyhIi~ved~~~~~~~iyLd~a~------~~~~p~~v~~al~~~l~~~~~~np~s~~~~~~~~~~~~~~~r~~l 114 (815)
.++..-|-++..+ ++..|+|..+ -+--.+.+.+++.+++....+.+.. . .... ..++-++|
T Consensus 26 ~i~~a~G~~l~D~------dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~--~-~~~~----~~~la~~L 92 (431)
T d1zoda1 26 IIERAKGSFVYDA------DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSE--M-LSRP----VVDLATRL 92 (431)
T ss_dssp CCCEEEBTEEECT------TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTT--C-CCHH----HHHHHHHH
T ss_pred eEEEeecCEEEEC------CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccc--c-ccHH----HHHHHHHH
Confidence 4455566554433 3445666543 2334588888888877653222211 1 1112 44566667
Q ss_pred HhHcCCCCCceeEEecCCchhhHHHHHhhhcc--CCCcEEEecCCCcc-hhhHHHHhhccc----------eEEcCc--h
Q psy16512 115 LQYFNTDSDHYSVIFTSGATSAIKTVSEYFEF--NEGSFIYLTDNHTS-VLGMRELVKTNQ----------IYSFSV--D 179 (815)
Q Consensus 115 a~~~g~~~~~~~iv~t~g~t~al~~~~~al~~--~~gdvv~~~~~h~s-~~~~~~~~~~~g----------~v~~~~--~ 179 (815)
.++..-..+. +.|++++|+|++.++..... ++..++.....|.. ...........+ ...+.. .
T Consensus 93 ~~~~~~~~~~--v~f~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (431)
T d1zoda1 93 ANITPPGLDR--ALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFT 170 (431)
T ss_dssp HHHSCTTCCE--EEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCT
T ss_pred HHhCCcccce--eeecccccchHHHHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecc
Confidence 7776433343 99999999999988876542 22236655554443 322222111110 111110 0
Q ss_pred h---------hhcchhhhhhhhhhhhhcCCCccEEEEecccCCCccccC----hHHHHHHhhccccccccccCCCCeEEE
Q psy16512 180 D---------ARNMLNEFKESQENVENMRHSNSLFVYPAESNFSGTKYP----LSWCNTVHRNHVFKKHFKCSRSNCFVL 246 (815)
Q Consensus 180 ~---------~~~~~~~~~~l~~~~~~~~~~t~lv~i~~~~n~tG~~~~----l~~I~~l~~~~~~~~~~~~~~~gi~vi 246 (815)
. ......++.+...+......+..+|++.-+....|.+.| +++|.++|+ ++|+++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~-----------~~gillI 239 (431)
T d1zoda1 171 YRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE-----------ARGMLLI 239 (431)
T ss_dssp TSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH-----------HHTCEEE
T ss_pred cccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHH-----------hcCceEE
Confidence 0 001111111111112223345788899888877788776 777888888 9999999
Q ss_pred Eeccccc-CCCCCCC----CCCCCcEEEEccccccccCCcceEEEEecccccccCcccccCceEEEEecCCcccccccCc
Q psy16512 247 LDAATYC-GSNMLDL----KQHQPDFISISFYKMFGYPTGLGALIVKQKSAHVLNKTFYGGGTVKISMANENFHIKKDGL 321 (815)
Q Consensus 247 vD~a~~~-g~~~~dl----~~~~~D~vv~S~~K~~g~p~G~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~ 321 (815)
+|+++.. |..-.-+ -...||+++.+ |.+++-.-++.++++++..+........
T Consensus 240 ~DEV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~~~~~~~~~~~~~~~-------------------- 297 (431)
T d1zoda1 240 LDEAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAAIEERAHELGYL-------------------- 297 (431)
T ss_dssp EECTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHHHHHHHHHTTCC--------------------
T ss_pred eccccccccccccccccccCCCCcchhccc--cccccccccceeeeeecchhhhhccccc--------------------
Confidence 9999773 3221111 12358987765 7544211156666766654332111000
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhccccCCCCcEEEcCCCCCCCCCcccceEEEEEe
Q psy16512 322 FEKFEDGTVNYLAIISLKYGFDTMEKKRKSFTNAFELSQYTYFYFKQLSYSNGQPLVELYHDTDYGESKYQGNIVNFNLL 401 (815)
Q Consensus 322 ~~~~~~gt~~~~~~~al~~al~~l~~~~~~~~~~~~l~~~l~~~L~~l~~~~~~p~~~l~~~~~~~~~~~~~~i~~f~~~ 401 (815)
.....+-+..+.+++.+.++.+.+.. ..++..++.+++.+.+.++... .+.+.-+ ...|.++.+.+.
T Consensus 298 --~~~T~~g~pl~~aaa~a~l~~i~~~~-~~~~~~~~g~~l~~~l~~~~~~--~~~i~~v--------rG~Glm~~ie~~ 364 (431)
T d1zoda1 298 --FYTTHVSDPLPAAVGLRVLDVVQRDG-LVARANVMGDRLRRGLLDLMER--FDCIGDV--------RGRGLLLGVEIV 364 (431)
T ss_dssp --CCCTTTTCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH--CTTEEEE--------EEETTEEEEEEE
T ss_pred --ccCCCCCCcchHHHHHHHHHHhhhhh-hhHHHHHHHHHHhhhhhhhhhc--CCCeEEE--------eecceEEEEEEe
Confidence 01112456667777777777766541 2266667667676666543110 0222211 234777787764
Q ss_pred cCC--CCcc--CHHHHHHhhhcCCcEeccCccCCchhhhhhcCCCHHHHHHHhhcCCccCCcccccCCCCceEEEEeccC
Q psy16512 402 HKD--GTYY--GYSEVQNLANLKKIQLRTGCHCNPGSCQRFLGLSDITIKFHFQQGHICGDDKDIIDGKPTGSIRISYGH 477 (815)
Q Consensus 402 ~~~--~~~~--~~~~v~~~l~~~gI~v~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~c~~~~~~~~~~~~g~iRvs~g~ 477 (815)
... .... -...+.+.+.++|+..+.-. .+ ...+.||+++.+
T Consensus 365 ~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~~~--~~---------------------------------~~~~~i~l~Ppl 409 (431)
T d1zoda1 365 KDRRTKEPADGLGAKITRECMNLGLSMNIVQ--LP---------------------------------GMGGVFRIAPPL 409 (431)
T ss_dssp EETTTTEECTTHHHHHHHHHHHTTEECCEEC--CT---------------------------------TSCCEEEECCCT
T ss_pred cCCcccCccHHHHHHHHHHHHHhCcccCeee--ec---------------------------------CCCCEEEEECCC
Confidence 211 1110 12346677788887643210 00 013789999999
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy16512 478 ASNWDDVKYFLSFLNQYFLQ 497 (815)
Q Consensus 478 ~~t~edi~~lv~~L~~~~~~ 497 (815)
..|++|||.++++|++.+.+
T Consensus 410 ~it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 410 TVSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999987753
|
| >d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FKBP-like superfamily: FKBP-like family: FKBP immunophilin/proline isomerase domain: Porin chaperone SurA, PPIase domains species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=2e-10 Score=98.80 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=45.8
Q ss_pred CCCCccccccCCCCchHHHHHHhcCCCCcccCCCcCCCCcccCCCcceeeecccc
Q psy16512 3 CLSGDLGWVVRGSMVGEFQDAAFKLPISTVNNPVYTEPPIKTKFGYHIIMVEGKN 57 (815)
Q Consensus 3 ~~gg~lgw~~~~~~~~~f~~a~~~l~~g~is~~~~~~~pv~t~fGyhIi~ved~~ 57 (815)
-.||+|||+..++|+++|+++++.|++|++|+ ||+|++||||+++.+++
T Consensus 55 ~~gG~lg~~~~~~l~~~~~~~i~~l~~G~is~------pi~t~~G~hIikl~~~R 103 (103)
T d2pv2a1 55 LNGGQMGWGRIQELPGIFAQALSTAKKGDIVG------PIRSGVGFHILKVNDLR 103 (103)
T ss_dssp GGTTEEEEEEGGGSBHHHHHHHHTCCTTCEEE------EEEETTEEEEEEEEEEC
T ss_pred ccccccccccccccchhhhhhhhhcCCCCCCC------cEEECCEEEEEEEeeEC
Confidence 47999999999999999999999999999998 89999999999997753
|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PK beta-barrel domain-like superfamily: PK beta-barrel domain-like family: MOSC (MOCO sulphurase C-terminal) domain domain: Hypothetical protein YuaD species: Bacillus subtilis [TaxId: 1423]
Probab=98.68 E-value=4.2e-08 Score=92.87 Aligned_cols=162 Identities=10% Similarity=0.063 Sum_probs=116.0
Q ss_pred CccEEeeeeeccccccCceeeccEEEEEecCCCcCcEEEEEeCCCceEEeccccccccccceeecCCCeEEEEeCCCCee
Q psy16512 531 KENKLVSIYIYPVKACGFFKVESKWEVTASGLKFDRQWMIITHSGVPLTQKLEKNLCLVQPNFDITRNIMTLCYKSSGST 610 (815)
Q Consensus 531 ~~~~v~~l~~yPvKs~~g~~~~~~~~~~~~Gl~~DR~~~~~~~~~~~~t~~~~p~l~~i~~~~~~~~~~l~l~~~~~~~~ 610 (815)
..++|..|++.|=++..-.+++ +++++..|+.+||..-.... ...+- +. +++.
T Consensus 5 ~~g~v~~i~i~~~~~~~~~~v~-~v~l~~~Gi~GDrh~g~t~~--------~~~~~----~~-----------~~~g--- 57 (182)
T d1orua_ 5 MTAKAEGLYIADTKSFVTKQMD-KLDFDYGGIPGDLHFGLTKK--------AGARE----PM-----------FSRG--- 57 (182)
T ss_dssp EEEEEEEEEECCSSCSSCEEES-EEEEBTTBSTTSTTCSSEEE--------CCTTS----TT-----------SCTT---
T ss_pred ceEEEEEEEecCCCCCCCcccc-eEEEecCCccccccCCcccc--------ccccc----cc-----------cccC---
Confidence 4689999999999999999999 99999999999993111000 00000 00 0000
Q ss_pred EEEecCCCCCceeeeEEeCCceeeeecchhHHHHHHHhcCCCCeEEEEecCCCCCCcccccccccceeeecHHhHHHHHH
Q psy16512 611 VEIGIDNEGLDLCTSKVCSDKITGFDCGNAVANWLDEQLNRKGLRLIRISKRSSKRNINSFSNMGQYLLITLPSIQAQLE 690 (815)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ls~~lg~~~~~L~~~~~~~~~~~~~~f~d~~p~~l~s~~Sl~~l~~ 690 (815)
+ .-.+...++|++.++++++++
T Consensus 58 -----------------------------------------~-----------------~~~~~RqVslis~E~l~~~~~ 79 (182)
T d1orua_ 58 -----------------------------------------T-----------------EIFNRRQISIVSIEECNEIAL 79 (182)
T ss_dssp -----------------------------------------C-----------------EEECCCCEEEEEHHHHHHHHH
T ss_pred -----------------------------------------C-----------------CcCCccEEEEecHHHHHHHHH
Confidence 1 001234599999999999999
Q ss_pred HhhhhcCcccccccccceEEEcCCCCcccCCCc-ceEEEecCCCCeEEEecccCCCccccccCccCCCCCCChhH-HHHh
Q psy16512 691 NLNAIFELENFVNRFRSNFVVSGQFEANAENDW-DQVLIETNDGLLSFQVTSQCTRCQYIYIDQETALNTDVPLG-EYQT 768 (815)
Q Consensus 691 ~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w-~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd~~tg~~~~~~l~-~l~~ 768 (815)
.++.+ .+++-.||-||+|+|. +.|.+-.+ .+++||+ ++.|+++.+|.+|..+....+++..+...+. .+.+
T Consensus 80 ~lg~~---~l~pg~~geNl~v~Gi-~~~~~l~~G~rl~ig~---~a~Levt~~~~PC~~~~~~~~~~~~~~~~~~~~~~~ 152 (182)
T d1orua_ 80 KMGVP---RILPEWLGANVAVSGM-PDLTSLKEGSRIIFPS---GAALLCEGENDPCIQPGEVIQSYYPDQPKLASAFVR 152 (182)
T ss_dssp HHTCS---CCCGGGGTCSEEEESC-TTGGGCCTTCEEECTT---SCEEEEEEECCCCHHHHHHHHHHSTTSTTHHHHHHH
T ss_pred HcCCC---cCCcccccceEEEeCc-ccHhhcCcccEEEECC---cEEEEEEeccccccccchhhhhccccchhhhhhhhh
Confidence 87642 4778999999999999 88888766 9999993 4999999999999999888888777754443 3333
Q ss_pred ccccccccCccccccccccc
Q psy16512 769 RNFSTVSLNVKEFFNNLEKT 788 (815)
Q Consensus 769 ~r~~~~~~~~~~~~~~~~~~ 788 (815)
.... ..|+|+-+...|
T Consensus 153 ~~~~----r~Gv~a~Vl~~G 168 (182)
T d1orua_ 153 HALG----IRGIVCIVERPG 168 (182)
T ss_dssp HSTT----SSCEEEEEEECE
T ss_pred hccC----CceEEEEEecCc
Confidence 2221 357777766554
|
| >d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PK beta-barrel domain-like superfamily: PK beta-barrel domain-like family: MOSC (MOCO sulphurase C-terminal) domain domain: Hypothetical protein YiiM species: Escherichia coli [TaxId: 562]
Probab=96.15 E-value=0.0036 Score=59.89 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=72.0
Q ss_pred ceeeecHHhHHHHHHHhhhhcCcccccccccceEEEcCCCCcccCCCc---ceEEEecCCCCeEEEecccCCCccccccC
Q psy16512 676 QYLLITLPSIQAQLENLNAIFELENFVNRFRSNFVVSGQFEANAENDW---DQVLIETNDGLLSFQVTSQCTRCQYIYID 752 (815)
Q Consensus 676 p~~l~s~~Sl~~l~~~l~~~~~~~~~~~rFRpNivi~~~~~~~~Ed~w---~~i~Ig~~~~~~~~~~~~~~~RC~~~~vd 752 (815)
.+++.+.+.++.+++.++.. ...+.+-.|+=||+|+|. . |... +.++|| +|.|+|+.||..|.- ++
T Consensus 64 AV~~~~~e~y~~w~~~l~~~-~~~~~~G~fGENLtv~Gl-~---e~~l~iGd~~~iG----~a~LeVtqpr~PC~k--l~ 132 (233)
T d1o65a_ 64 ALCHYPREHYLYWAREFPEQ-AELFVAPAFGENLSTDGL-T---ESNVYMGDIFRWG----EALIQVSQPRSPCYK--LN 132 (233)
T ss_dssp SEEEEETHHHHHHHHHCGGG-GGGCSTTTTCCSEEESSC-C---TTTCBTTCEEEET----TEEEEEEEECCCCTH--HH
T ss_pred EEEEeCHHHHHHHHHHhccc-ccccCcchhcCcEEEecC-C---HHHCCcCCEEEEC----cEEEEEeCCcCchHH--HH
Confidence 49999999999999998753 235677899999999987 3 4443 999999 999999999999974 44
Q ss_pred ccCCCCCCChhHHHHhccccccccCccccccccccccc
Q psy16512 753 QETALNTDVPLGEYQTRNFSTVSLNVKEFFNNLEKTYN 790 (815)
Q Consensus 753 ~~tg~~~~~~l~~l~~~r~~~~~~~~~~~~~~~~~~~~ 790 (815)
...+. ++..+.+.+..+ .|.|+.++..|.-
T Consensus 133 ~~~~~--~~~~~~~~~~g~------~G~y~rVl~~G~I 162 (233)
T d1o65a_ 133 YHFDI--SDIAQLMQNTGK------VGWLYSVIAPGKV 162 (233)
T ss_dssp HHTTC--TTHHHHHHHHTC------CCEEEEEEECEEE
T ss_pred HHhCc--cchhHHhhhcCC------ceEEEEEecCcEE
Confidence 44443 456666665443 2788888866543
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