Psyllid ID: psy1651


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
MNNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTSPTAANHEHGKSSDFLSPF
ccccccEEEcccccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
ccccEEEEEcccEEEEEcccccccccHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccccccccccccccccccc
MNNPVYLVQNDRYywissegdyirhpVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMtqgqtvtsptaanhehgkssdflspf
MNNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEirkelkikegaeklrevardrkslsdvativkksnsklsELHNELQELESQIIMTQGQTVTSptaanhehgkssdflspf
MNNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNkleelkehirkeirkelkikeGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTSPTAANHEHGKSSDFLSPF
****VYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEA***********************************************************************************************
*********ND*****************YELSHK***************************IRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL********************************
MNNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQ************************
*NNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQ************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNPVYLVQNDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIxxxxxxxxxxxxxxxxxxxxxxxxxxxxTVTSPTAANHEHGKSSDFLSPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query141 2.2.26 [Sep-21-2011]
A1Z7T0 1190 Serine/threonine-protein no N/A 0.773 0.091 0.675 3e-36
Q16513 984 Serine/threonine-protein yes N/A 0.638 0.091 0.457 3e-16
Q8BWW9 983 Serine/threonine-protein yes N/A 0.673 0.096 0.434 3e-15
O08874 985 Serine/threonine-protein yes N/A 0.609 0.087 0.477 3e-15
A7MBL8 977 Serine/threonine-protein yes N/A 0.503 0.072 0.563 5e-15
Q8K045 878 Serine/threonine-protein no N/A 0.567 0.091 0.419 5e-12
Q6P5Z2 889 Serine/threonine-protein no N/A 0.418 0.066 0.515 9e-12
Q63433 946 Serine/threonine-protein no N/A 0.680 0.101 0.357 6e-10
P70268 946 Serine/threonine-protein no N/A 0.680 0.101 0.357 7e-10
Q16512 942 Serine/threonine-protein no N/A 0.638 0.095 0.373 4e-06
>sp|A1Z7T0|PKN_DROME Serine/threonine-protein kinase N OS=Drosophila melanogaster GN=Pkn PE=1 SV=1 Back     alignment and function desciption
 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%), Gaps = 5/114 (4%)

Query: 10  NDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIK 69
           +D YY    +G+YI+HPVLYELSHKYGF TEN+ E  +  +LEE+KE IR+EIRKELKIK
Sbjct: 2   SDSYY----QGEYIKHPVLYELSHKYGF-TENLPESCMSIRLEEIKEAIRREIRKELKIK 56

Query: 70  EGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
           EGAEKLREVA+DR+SLSDVA +VKKS SKL+EL +ELQELESQI++T   T  +
Sbjct: 57  EGAEKLREVAKDRRSLSDVAVLVKKSKSKLAELKSELQELESQILLTSANTAVN 110




Pkc-related serine/threonine-protein kinase and Rho/Rac effector protein that participates in specific signal transduction responses in the cell. May play a role in the regulation of cell cycle progression, actin cytoskeleton assembly, cell migration, cell adhesion and transcription activation signaling processes (By similarity). Plays a role in regulating Rho-mediated dorsal closure during embryogenesis.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 3
>sp|Q16513|PKN2_HUMAN Serine/threonine-protein kinase N2 OS=Homo sapiens GN=PKN2 PE=1 SV=1 Back     alignment and function description
>sp|Q8BWW9|PKN2_MOUSE Serine/threonine-protein kinase N2 OS=Mus musculus GN=Pkn2 PE=1 SV=3 Back     alignment and function description
>sp|O08874|PKN2_RAT Serine/threonine-protein kinase N2 OS=Rattus norvegicus GN=Pkn2 PE=1 SV=2 Back     alignment and function description
>sp|A7MBL8|PKN2_DANRE Serine/threonine-protein kinase N2 OS=Danio rerio GN=pkn2 PE=2 SV=1 Back     alignment and function description
>sp|Q8K045|PKN3_MOUSE Serine/threonine-protein kinase N3 OS=Mus musculus GN=Pkn3 PE=1 SV=1 Back     alignment and function description
>sp|Q6P5Z2|PKN3_HUMAN Serine/threonine-protein kinase N3 OS=Homo sapiens GN=PKN3 PE=1 SV=1 Back     alignment and function description
>sp|Q63433|PKN1_RAT Serine/threonine-protein kinase N1 OS=Rattus norvegicus GN=Pkn1 PE=1 SV=2 Back     alignment and function description
>sp|P70268|PKN1_MOUSE Serine/threonine-protein kinase N1 OS=Mus musculus GN=Pkn1 PE=1 SV=3 Back     alignment and function description
>sp|Q16512|PKN1_HUMAN Serine/threonine-protein kinase N1 OS=Homo sapiens GN=PKN1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
347965281 1348 AGAP007587-PA [Anopheles gambiae str. PE 0.723 0.075 0.757 8e-37
320543709 1354 protein kinase related to protein kinase 0.801 0.083 0.692 4e-36
161076448 1501 protein kinase related to protein kinase 0.801 0.075 0.692 5e-36
189235408 1066 PREDICTED: similar to protein kinase N2 0.808 0.106 0.686 5e-36
281362976 1284 protein kinase related to protein kinase 0.801 0.088 0.692 5e-36
242022370 1059 conserved hypothetical protein [Pediculu 0.794 0.105 0.699 8e-36
270004278 936 hypothetical protein TcasGA2_TC003607 [T 0.773 0.116 0.715 1e-35
345488814 1831 PREDICTED: hypothetical protein LOC10011 0.829 0.063 0.663 3e-35
383860305 1758 PREDICTED: serine/threonine-protein kina 0.836 0.067 0.674 4e-35
307177860 1747 Serine/threonine-protein kinase N2 [Camp 0.836 0.067 0.674 4e-35
>gi|347965281|ref|XP_308283.5| AGAP007587-PA [Anopheles gambiae str. PEST] gi|333466431|gb|EAA03911.6| AGAP007587-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 95/103 (92%), Gaps = 1/103 (0%)

Query: 20  GDYIRHPVLYELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVA 79
           GDYI+HPVLYELSHKYG + +NV+E+ LP++LEE+KE IR+EIRKELKIKEGAEKLREVA
Sbjct: 47  GDYIKHPVLYELSHKYG-LPDNVSEQLLPDRLEEIKEAIRREIRKELKIKEGAEKLREVA 105

Query: 80  RDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVT 122
            DR+SLSDVA+IVKKSN+KL+EL +EL ELESQII+TQG +V+
Sbjct: 106 TDRRSLSDVASIVKKSNNKLAELKSELHELESQIILTQGNSVS 148




Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320543709|ref|NP_001188896.1| protein kinase related to protein kinase N, isoform K [Drosophila melanogaster] gi|318068555|gb|ADV37144.1| protein kinase related to protein kinase N, isoform K [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|161076448|ref|NP_001097237.1| protein kinase related to protein kinase N, isoform G [Drosophila melanogaster] gi|157400248|gb|ABV53735.1| protein kinase related to protein kinase N, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|189235408|ref|XP_971016.2| PREDICTED: similar to protein kinase N2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|281362976|ref|NP_001163095.1| protein kinase related to protein kinase N, isoform H [Drosophila melanogaster] gi|272432404|gb|ACZ94373.1| protein kinase related to protein kinase N, isoform H [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|242022370|ref|XP_002431613.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212516921|gb|EEB18875.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|270004278|gb|EFA00726.1| hypothetical protein TcasGA2_TC003607 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345488814|ref|XP_001599463.2| PREDICTED: hypothetical protein LOC100114442 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383860305|ref|XP_003705631.1| PREDICTED: serine/threonine-protein kinase N-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307177860|gb|EFN66820.1| Serine/threonine-protein kinase N2 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
FB|FBgn0020621 1190 Pkn "Protein kinase related to 0.773 0.091 0.526 1.3e-22
UNIPROTKB|B1AL79 604 PKN2 "Serine/threonine-protein 0.368 0.086 0.519 2.8e-08
UNIPROTKB|F1MFK1 981 PKN2 "Uncharacterized protein" 0.368 0.053 0.538 4.2e-08
UNIPROTKB|Q16513 984 PKN2 "Serine/threonine-protein 0.368 0.052 0.519 5.4e-08
UNIPROTKB|F1S4D4 969 PKN2 "Uncharacterized protein" 0.368 0.053 0.519 1.1e-07
RGD|620146 985 Pkn2 "protein kinase N2" [Ratt 0.368 0.052 0.5 3e-07
UNIPROTKB|O08874 985 Pkn2 "Serine/threonine-protein 0.368 0.052 0.5 3e-07
MGI|MGI:109211 983 Pkn2 "protein kinase N2" [Mus 0.368 0.052 0.5 3.8e-07
ZFIN|ZDB-GENE-061013-393 977 zgc:153916 "zgc:153916" [Danio 0.361 0.052 0.509 4.8e-07
UNIPROTKB|F1LPA4 983 Pkn2 "Serine/threonine-protein 0.326 0.046 0.543 6.2e-07
FB|FBgn0020621 Pkn "Protein kinase related to protein kinase N" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 275 (101.9 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 60/114 (52%), Positives = 74/114 (64%)

Query:    10 NDRYYWISSEGDYIRHPVLYELSHKYGFITENVAEEALPNXXXXXXXXXXXXXXXXXXXX 69
             +D YY    +G+YI+HPVLYELSHKYGF TEN+ E  +                      
Sbjct:     2 SDSYY----QGEYIKHPVLYELSHKYGF-TENLPESCMSIRLEEIKEAIRREIRKELKIK 56

Query:    70 XGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQELESQIIMTQGQTVTS 123
              GAEKLREVA+DR+SLSDVA +VKKS SKL+EL +ELQELESQI++T   T  +
Sbjct:    57 EGAEKLREVAKDRRSLSDVAVLVKKSKSKLAELKSELQELESQILLTSANTAVN 110




GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;NAS
GO:0006468 "protein phosphorylation" evidence=ISS;NAS
GO:0004697 "protein kinase C activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0004672 "protein kinase activity" evidence=IDA
GO:0007391 "dorsal closure" evidence=IMP;TAS
GO:0046777 "protein autophosphorylation" evidence=IDA
GO:0005524 "ATP binding" evidence=IEA
GO:0007165 "signal transduction" evidence=IEA
GO:0005737 "cytoplasm" evidence=IDA
GO:0007472 "wing disc morphogenesis" evidence=IMP
UNIPROTKB|B1AL79 PKN2 "Serine/threonine-protein kinase N2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFK1 PKN2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q16513 PKN2 "Serine/threonine-protein kinase N2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4D4 PKN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|620146 Pkn2 "protein kinase N2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O08874 Pkn2 "Serine/threonine-protein kinase N2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109211 Pkn2 "protein kinase N2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-393 zgc:153916 "zgc:153916" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPA4 Pkn2 "Serine/threonine-protein kinase N2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7MBL8PKN2_DANRE2, ., 7, ., 1, 1, ., 1, 30.56330.50350.0726yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
cd1162266 cd11622, HR1_PKN_1, First Protein kinase C-related 6e-26
smart0074257 smart00742, Hr1, Rho effector or protein kinase C- 1e-10
pfam0218560 pfam02185, HR1, Hr1 repeat 2e-08
cd0008968 cd00089, HR1, Protein kinase C-related kinase homo 8e-08
cd1163385 cd11633, HR1_Rhophilin-1, Protein kinase C-related 2e-04
>gnl|CDD|212012 cd11622, HR1_PKN_1, First Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Protein Kinase N Back     alignment and domain information
 Score = 92.7 bits (231), Expect = 6e-26
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 50  KLEELKEHIRKEIRKELKIKEGAEKLREVARDRKSLSDVATIVKKSNSKLSELHNELQEL 109
           KLEELKE IR+EIRKELKIKEGAE LR+   D+KSL+ V +I+KKSN KL +LH ELQEL
Sbjct: 3   KLEELKEQIRREIRKELKIKEGAENLRKATTDKKSLAHVESILKKSNRKLEDLHQELQEL 62

Query: 110 ESQI 113
           E+ I
Sbjct: 63  EAHI 66


PKN, also called Protein-kinase C-related kinase (PRK), is a serine/threonine protein kinase that can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytoskeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. In some vertebrates, there are three PKN isoforms from different genes (designated PKN1, PKN2, and PKN3), which show different enzymatic properties, tissue distribution, and varied functions. PKN proteins contain three HR1 domains, a C2 domain, and a kinase domain. This model characterizes the first HR1 domain of PKN. HR1 domains are anti-parallel coiled-coil (ACC) domains that bind small GTPases from the Rho family. Length = 66

>gnl|CDD|128981 smart00742, Hr1, Rho effector or protein kinase C-related kinase homology region 1 homologues Back     alignment and domain information
>gnl|CDD|216921 pfam02185, HR1, Hr1 repeat Back     alignment and domain information
>gnl|CDD|212008 cd00089, HR1, Protein kinase C-related kinase homology region 1 (HR1) domain that binds Rho family small GTPases Back     alignment and domain information
>gnl|CDD|212023 cd11633, HR1_Rhophilin-1, Protein kinase C-related kinase homology region 1 (HR1) Rho-binding domain of Rhophilin-1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 141
PF0218570 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repea 99.51
cd0008972 HR1 Protein kinase C-related kinase homology regio 99.43
smart0074257 Hr1 Rho effector or protein kinase C-related kinas 99.39
PF15456124 Uds1: Up-regulated During Septation 94.81
PRK10884206 SH3 domain-containing protein; Provisional 92.01
KOG2220|consensus 714 85.24
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) [] Back     alignment and domain information
Probab=99.51  E-value=5e-14  Score=95.47  Aligned_cols=66  Identities=36%  Similarity=0.549  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHH-Hhhhhc-HHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCC
Q psy1651          54 LKEHIRKEIRKELKIKEGAEKLREV-ARDRKS-LSDVATIVKKSNSKLSELHNELQELESQIIMTQGQ  119 (141)
Q Consensus        54 ~ra~Ir~eI~KELKIKeGAENL~rA-ttdkk~-r~~Ve~eLs~sN~kL~~L~~eL~eLna~i~v~q~~  119 (141)
                      +.+.|+.+|.+|+|||+|||||++| .+|++. +..|+.+|..|+++|+.|+.+|+.++++....++.
T Consensus         2 ~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~~~~~~   69 (70)
T PF02185_consen    2 RIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQNSQSS   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH---HC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCC
Confidence            5688999999999999999999999 578776 99999999999999999999999999988776653



The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.

>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain Back     alignment and domain information
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues Back     alignment and domain information
>PF15456 Uds1: Up-regulated During Septation Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG2220|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
1cxz_B86 Protein (PKN); protein-protein complex, antiparall 9e-23
2ke4_A98 CDC42-interacting protein 4; CIP4, TC10, coiled-co 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1 Length = 86 Back     alignment and structure
 Score = 84.7 bits (209), Expect = 9e-23
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 29  YELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR-KSLSD 87
           + L  + G    ++A   +  +LE  +E +R+EIRKELK+KEGAE LR    D  +SL  
Sbjct: 1   WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGP 60

Query: 88  VATIVKKSNSKLSELHNELQELESQI 113
           V  +++ S+ +L  LH +LQEL + +
Sbjct: 61  VELLLRGSSRRLDLLHQQLQELHAHV 86


>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
1cxz_B86 Protein (PKN); protein-protein complex, antiparall 99.96
1urf_A81 Protein kinase C-like 1; transferase, G-protein, H 98.37
2ke4_A98 CDC42-interacting protein 4; CIP4, TC10, coiled-co 97.16
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 80.53
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1 Back     alignment and structure
Probab=99.96  E-value=4e-30  Score=184.76  Aligned_cols=83  Identities=40%  Similarity=0.639  Sum_probs=79.2

Q ss_pred             hhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHHHh
Q psy1651          31 LSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQEL  109 (141)
Q Consensus        31 L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~eL  109 (141)
                      ++..+|+++.|..+|.+|++++++|+.||++|+||||||+|||||++|||| |+++++|+.+|++||++|++||++|++|
T Consensus         3 ~~~~~~~~~~~~~d~~~q~~le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL   82 (86)
T 1cxz_B            3 LLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQEL   82 (86)
T ss_dssp             HHHHTTCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhccCccccccChHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456788887888999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             cccc
Q psy1651         110 ESQI  113 (141)
Q Consensus       110 na~i  113 (141)
                      +|+|
T Consensus        83 ~a~~   86 (86)
T 1cxz_B           83 HAHV   86 (86)
T ss_dssp             HTTC
T ss_pred             cCCC
Confidence            9986



>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B* Back     alignment and structure
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 141
d1cxzb_86 a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Hu 6e-26
d1urfa_81 a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Hu 1e-11
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 86 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: HR1 repeat
family: HR1 repeat
domain: Protein kinase c-like 1, pkn/prk1
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 91.8 bits (228), Expect = 6e-26
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 29  YELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARDR-KSLSD 87
           + L  + G    ++A   +  +LE  +E +R+EIRKELK+KEGAE LR    D  +SL  
Sbjct: 1   WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGP 60

Query: 88  VATIVKKSNSKLSELHNELQELESQI 113
           V  +++ S+ +L  LH +LQEL + +
Sbjct: 61  VELLLRGSSRRLDLLHQQLQELHAHV 86


>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
d1cxzb_86 Protein kinase c-like 1, pkn/prk1 {Human (Homo sap 100.0
d1urfa_81 Protein kinase c-like 1, pkn/prk1 {Human (Homo sap 99.49
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: HR1 repeat
family: HR1 repeat
domain: Protein kinase c-like 1, pkn/prk1
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00  E-value=1.6e-34  Score=206.24  Aligned_cols=85  Identities=39%  Similarity=0.641  Sum_probs=83.1

Q ss_pred             hhhhhhcCCcccCcccchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh-hhcHHHHHHHHHHHhHHHHHHHHHHH
Q psy1651          29 YELSHKYGFITENVAEEALPNKLEELKEHIRKEIRKELKIKEGAEKLREVARD-RKSLSDVATIVKKSNSKLSELHNELQ  107 (141)
Q Consensus        29 ~~L~~~~~~~~~d~~~~~~q~kLe~~ra~Ir~eI~KELKIKeGAENL~rAttd-kk~r~~Ve~eLs~sN~kL~~L~~eL~  107 (141)
                      |+|+++||+.|+|++++++|++||++|+.||++|+||||||+|||||++|||| ||++++|+.+|++||++|++||+||+
T Consensus         1 ~~~~~~~gl~~~d~~~~~~q~~le~~r~~lr~eI~KELKIKeGAENL~~attd~kk~~~~V~~eL~~sN~kL~~L~~eL~   80 (86)
T d1cxzb_           1 WSLLEQLGLAGADLAAPGVQQQLELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQ   80 (86)
T ss_dssp             CCHHHHTTCTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999 69999999999999999999999999


Q ss_pred             Hhcccc
Q psy1651         108 ELESQI  113 (141)
Q Consensus       108 eLna~i  113 (141)
                      +|||+|
T Consensus        81 eLna~i   86 (86)
T d1cxzb_          81 ELHAHV   86 (86)
T ss_dssp             HHHTTC
T ss_pred             HhhccC
Confidence            999986



>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure